Citrus Sinensis ID: 041556

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESEVVDYDNK
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccccccccccccEEEEEEEEcccccccccEEEEEEccEEEEEcccccccccccccEEEEcccEEEEEccccccccccEEEEEEccEEEEEEcccHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccccccccccEcccccEEEEEEEEccccccEEEEEEEEEccEEEEEccccccccccccccEEEcccEEEEEccccccccccEEEEEccccEEEEEEccHHHHHHHHHHHHHHHHccccccccccEEccccc
Coil and Loop (DISEMBL)
MENIWralsgqdpnpedytgiefwsnpersgwltkqgdyIKTWRRRWFILKqgklfwfkdshnitpgstprgvipvgtcltvrgaedllnkpfafelstgeytMYFVADTEKEKEEWINSIGRAIVQHsrsvtesevvdydnk
Flexible Loop (DISEMBL)
meniwralsgqdpnpedYTGIEfwsnpersgwltKQGDYIKTWRRRWFILKQGKLFWFKDSHnitpgstprgvipVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRaivqhsrsvtesevvdydnk
Low Complexity Region (SEG)
MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESEVVDYDNK
Disordered region (IsUnstruct)
*****************YTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQ****************
Disordered Region (DISOPRED)
**************************PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIG*********************
Disordered Region (DISEMBL)
MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQH***************
Disordered Region (DISPRO)
*ENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESE*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESEVVDYDNK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q9ST43	145	Pleckstrin homology domai	yes	no	1.0	0.986	0.777	4e-63
Q76MY7	399	Cytohesin-2 OS=Chlorocebu	N/A	no	0.657	0.235	0.368	4e-12
O08967	399	Cytohesin-3 OS=Mus muscul	no	no	0.657	0.235	0.368	9e-12
Q15438	398	Cytohesin-1 OS=Homo sapie	yes	no	0.657	0.236	0.390	9e-12
Q76MZ1	398	Cytohesin-1 OS=Chlorocebu	N/A	no	0.657	0.236	0.390	9e-12
P97694	398	Cytohesin-1 OS=Rattus nor	no	no	0.657	0.236	0.382	2e-11
Q9QX11	398	Cytohesin-1 OS=Mus muscul	yes	no	0.657	0.236	0.382	2e-11
Q86IV4	458	PH domain-containing prot	yes	no	0.748	0.233	0.348	2e-11
Q80TI1	1356	Pleckstrin homology domai	no	no	0.587	0.061	0.358	5e-11
Q80YW0	393	Cytohesin-4 OS=Mus muscul	no	no	0.748	0.272	0.335	5e-11

>sp|Q9ST43|PH1_ARATH Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2

 Score =  239 bits (610), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/144 (77%), Positives = 128/144 (88%), Gaps = 1/144 (0%)

Query: 1   MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKD 60
           ME+IWR  +GQDP+ EDY GIEFWSNPERSGWLTKQGDYIKTWRRRWF+LK+GKL WFKD
Sbjct: 1   MESIWRIATGQDPSREDYEGIEFWSNPERSGWLTKQGDYIKTWRRRWFVLKRGKLLWFKD 60

Query: 61  SHNI-TPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWIN 119
                  GSTPRGVI VG CLTV+GAED++NKPFAFELS+G YTM+F+AD EKEKEEWIN
Sbjct: 61  QAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWIN 120

Query: 120 SIGRAIVQHSRSVTESEVVDYDNK 143
           SIGR+IVQHSRSVT+SEV+DYD++
Sbjct: 121 SIGRSIVQHSRSVTDSEVLDYDHR 144

Binds specifically to phosphatidylinositol 3-phosphate (PtdIns3P), but not to other phosphoinositides.
Arabidopsis thaliana (taxid: 3702)

>sp|Q76MY7|CYH2_CHLAE Cytohesin-2 OS=Chlorocebus aethiops GN=CYTH2 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 28/122 (22%)

Query: 26  NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
           NP+R GWL K G  +KTW+RRWFIL    L++F+     T    PRG+IP+   L++R  
Sbjct: 259 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREV 313

Query: 86  EDLLNKPFAFEL---------------------STGEYTMYFV-ADTEKEKEEWINSIGR 123
           +D   KP  FEL                       G + +Y + A T++EK+EWI SI  
Sbjct: 314 DD-PRKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSIQA 372

Query: 124 AI 125
           A+
Sbjct: 373 AV 374

Acts as a guanine-nucleotide exchange factor (GEF). Promotes guanine-nucleotide exchange on ARF1, ARF3 and ARF6. Promotes the activation of ARF factors through replacement of GDP with GTP. The cell membrane form, in association with ARL4 proteins, recruits ARF6 to the plasma membrane.

Chlorocebus aethiops (taxid: 9534)

>sp|O08967|CYH3_MOUSE Cytohesin-3 OS=Mus musculus GN=Cyth3 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 62/122 (50%), Gaps = 28/122 (22%)

Query: 26  NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
           NP+R GWL K G  +KTW+RRWFIL    L++F+     T    PRG+IP+   L++R  
Sbjct: 264 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREV 318

Query: 86  EDLLNKPFAFELST---------------------GEYTMYFV-ADTEKEKEEWINSIGR 123
           ED   KP  FEL                       G + +Y + A + +EKEEW+ SI  
Sbjct: 319 ED-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKA 377

Query: 124 AI 125
           +I
Sbjct: 378 SI 379

Promotes guanine-nucleotide exchange on ARF1. Promotes the activation of ARF through replacement of GDP with GTP.

Mus musculus (taxid: 10090)

>sp|Q15438|CYH1_HUMAN Cytohesin-1 OS=Homo sapiens GN=CYTH1 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 62/123 (50%), Gaps = 29/123 (23%)

Query: 26  NPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           NP+R GWL K G   +KTW+RRWFIL    L++F+     T    PRG+IP+   L++R 
Sbjct: 260 NPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIRE 314

Query: 85  AEDLLNKPFAFEL---------------------STGEYTMYFV-ADTEKEKEEWINSIG 122
            ED   KP  FEL                       G +T+Y + A T +EKEEWI  I 
Sbjct: 315 VED-SKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVYRISAPTPEEKEEWIKCIK 373

Query: 123 RAI 125
            AI
Sbjct: 374 AAI 376

Promotes guanine-nucleotide exchange on ARF1 and ARF5. Promotes the activation of ARF through replacement of GDP with GTP.

Homo sapiens (taxid: 9606)

>sp|Q76MZ1|CYH1_CHLAE Cytohesin-1 OS=Chlorocebus aethiops GN=CYTH1 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 62/123 (50%), Gaps = 29/123 (23%)

Query: 26  NPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           NP+R GWL K G   +KTW+RRWFIL    L++F+     T    PRG+IP+   L++R 
Sbjct: 260 NPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIRE 314

Query: 85  AEDLLNKPFAFEL---------------------STGEYTMYFV-ADTEKEKEEWINSIG 122
            ED   KP  FEL                       G +T+Y + A T +EKEEWI  I 
Sbjct: 315 VED-SKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVYRISAPTPEEKEEWIKCIK 373

Query: 123 RAI 125
            AI
Sbjct: 374 AAI 376

Promotes guanine-nucleotide exchange on ARF1 and ARF5. Promotes the activation of ARF through replacement of GDP with GTP.

Chlorocebus aethiops (taxid: 9534)

>sp|P97694|CYH1_RAT Cytohesin-1 OS=Rattus norvegicus GN=Cyth1 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 29/123 (23%)

Query: 26  NPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           NP+R GWL K G   +KTW+RRWFIL    L++F+     T    PRG+IP+   L++R 
Sbjct: 260 NPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIRE 314

Query: 85  AEDLLNKPFAFEL---------------------STGEYTMYFV-ADTEKEKEEWINSIG 122
            ED   KP  FEL                       G +T+Y + A T +EKE+WI  I 
Sbjct: 315 VED-SKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVYRISAPTPEEKEDWIKCIK 373

Query: 123 RAI 125
            AI
Sbjct: 374 AAI 376

Promotes guanine-nucleotide exchange on ARF6. Promotes the activation of ARF6 through replacement of GDP with GTP.

Rattus norvegicus (taxid: 10116)

>sp|Q9QX11|CYH1_MOUSE Cytohesin-1 OS=Mus musculus GN=Cyth1 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 29/123 (23%)

Query: 26  NPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           NP+R GWL K G   +KTW+RRWFIL    L++F+     T    PRG+IP+   L++R 
Sbjct: 260 NPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIRE 314

Query: 85  AEDLLNKPFAFEL---------------------STGEYTMYFV-ADTEKEKEEWINSIG 122
            ED   KP  FEL                       G +T+Y + A T +EKE+WI  I 
Sbjct: 315 VED-SKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVYRISAPTPEEKEDWIKCIK 373

Query: 123 RAI 125
            AI
Sbjct: 374 AAI 376

Promotes guanine-nucleotide exchange on ARF1 and ARF5. Promotes the activation of ARF through replacement of GDP with GTP.

Mus musculus (taxid: 10090)

>sp|Q86IV4|Y4775_DICDI PH domain-containing protein DDB_G0274775 OS=Dictyostelium discoideum GN=DDB_G0274775 PE=4 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 15  PEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVI 74
           PE    +   +  +R GWLTKQG  I+TWRRRWF+LK  KLF+FK   +I       G+I
Sbjct: 4   PELKVSVSQLAPSDREGWLTKQGGSIRTWRRRWFVLKGKKLFYFKSKGDI----EATGLI 59

Query: 75  PV-GTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
            +          +    K + F + T +   Y  A+TE + ++W+ SI R +
Sbjct: 60  ELEQNSFVKEEKDKDKKKKYMFTVGTSKRVFYIFAETETDMKQWMESIKRNL 111

Dictyostelium discoideum (taxid: 44689)

>sp|Q80TI1|PKHH1_MOUSE Pleckstrin homology domain-containing family H member 1 OS=Mus musculus GN=Plekhh1 PE=2 SV=2

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 8/92 (8%)

Query: 28  ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGT-CLTVRGAE 86
           E+SG+L K G  +KTW+RRWF+L+QG++ ++K   ++     P+G + + + C  VR  E
Sbjct: 574 EKSGYLLKMGSRVKTWKRRWFVLRQGQILYYKSPSDVI--RKPQGQVDLNSHCQIVREEE 631

Query: 87  DLLNKPFAFELSTGEYTMYFVADTEKEKEEWI 118
                   F+L +G  T Y  A++    EEWI
Sbjct: 632 AQ-----TFQLISGNKTYYLTAESPSLLEEWI 658

Mus musculus (taxid: 10090)

>sp|Q80YW0|CYH4_MOUSE Cytohesin-4 OS=Mus musculus GN=Cyth4 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 30/137 (21%)

Query: 15  PEDYTG--IEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRG 72
           PED  G     + NP+R GWL K G  +KTW+RRWFIL    L++F+     T    PRG
Sbjct: 246 PEDDGGDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE----FTTDKEPRG 301

Query: 73  VIPVGTCLTVRGAEDLLNKPFAFELST---------------------GEYTMYFV-ADT 110
           +IP+   L+V+  ED   KPF  EL                       G++  Y + A  
Sbjct: 302 IIPLEN-LSVQKVED-PKKPFCLELYNPSCRGQKIKACKTDGDGKVVEGKHESYRISAAN 359

Query: 111 EKEKEEWINSIGRAIVQ 127
            +E+++WI +I  +I +
Sbjct: 360 AEERDQWIEAIRASITR 376

Promotes guanine-nucleotide exchange on ARF1 and ARF5. Promotes the activation of ARF through replacement of GDP with GTP.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
297822693	145	hypothetical protein ARALYDRAFT_481886 [	1.0	0.986	0.791	2e-62
224106281	143	predicted protein [Populus trichocarpa]	0.986	0.986	0.788	2e-62
255569315	144	plekhh protein, putative [Ricinus commun	0.986	0.979	0.788	2e-61
18402122	145	Pleckstrin homology domain-containing pr	1.0	0.986	0.777	3e-61
224059304	144	predicted protein [Populus trichocarpa]	0.986	0.979	0.774	3e-61
225434632	143	PREDICTED: pleckstrin homology domain-co	0.993	0.993	0.783	4e-61
5926716	145	AtPH1 [Arabidopsis thaliana]	1.0	0.986	0.770	5e-61
351723457	146	uncharacterized protein LOC100527890 [Gl	0.986	0.965	0.746	5e-59
449450806	149	PREDICTED: pleckstrin homology domain-co	0.993	0.953	0.743	6e-59
356501146	148	PREDICTED: pleckstrin homology domain-co	0.986	0.952	0.739	3e-58

>gi|297822693|ref|XP_002879229.1| hypothetical protein ARALYDRAFT_481886 [Arabidopsis lyrata subsp. lyrata] gi|297325068|gb|EFH55488.1| hypothetical protein ARALYDRAFT_481886 [Arabidopsis lyrata subsp. lyrata]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/144 (79%), Positives = 129/144 (89%), Gaps = 1/144 (0%)

Query: 1   MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKD 60
           ME+IWR  +GQDPN EDY GIEFWSNPERSGWLTKQGDYIKTWRRRWF+LK+GKL WFKD
Sbjct: 1   MESIWRIATGQDPNREDYEGIEFWSNPERSGWLTKQGDYIKTWRRRWFVLKRGKLLWFKD 60

Query: 61  SHNI-TPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWIN 119
                T GSTPRGVI VG CLTV+GAED++NKPFAFELS+G YTM+F+AD EKEKEEWIN
Sbjct: 61  QAAAGTRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWIN 120

Query: 120 SIGRAIVQHSRSVTESEVVDYDNK 143
           SIGR+IVQHSRSVT+SEV+DYD++
Sbjct: 121 SIGRSIVQHSRSVTDSEVLDYDHR 144

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106281|ref|XP_002314112.1| predicted protein [Populus trichocarpa] gi|222850520|gb|EEE88067.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 131/142 (92%), Gaps = 1/142 (0%)

Query: 1   MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKD 60
           ME+I R+L+GQDPNP+DY  IEFWS+PERSGWLTKQGDYIKTWRRRWF+LKQGKL WFK+
Sbjct: 1   MESILRSLTGQDPNPDDYRNIEFWSDPERSGWLTKQGDYIKTWRRRWFVLKQGKLLWFKE 60

Query: 61  SHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINS 120
             ++T GS PRGVIPVG CLTV+GAED+LNKP+AFELST + TMYF+AD+EKEKEEWINS
Sbjct: 61  -RSVTRGSIPRGVIPVGKCLTVKGAEDVLNKPYAFELSTSQETMYFIADSEKEKEEWINS 119

Query: 121 IGRAIVQHSRSVTESEVVDYDN 142
           IGR+IVQHSRSVT+SE+VDYD+
Sbjct: 120 IGRSIVQHSRSVTDSEIVDYDS 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569315|ref|XP_002525625.1| plekhh protein, putative [Ricinus communis] gi|223535061|gb|EEF36743.1| plekhh protein, putative [Ricinus communis]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 128/142 (90%), Gaps = 1/142 (0%)

Query: 1   MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKD 60
           ME+  R+ +GQDPNPEDY  IEFWSNPER+GWLTKQG+YIKTWRRRWFILKQGKL WFK+
Sbjct: 1   MESFLRSWTGQDPNPEDYKKIEFWSNPERAGWLTKQGNYIKTWRRRWFILKQGKLLWFKE 60

Query: 61  SHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINS 120
            H +T  S PRGV+PVG CLTV+GAED++NKPFAFELST + TMYF+AD+EKEKEEWINS
Sbjct: 61  KH-VTRHSIPRGVVPVGQCLTVKGAEDVINKPFAFELSTNQETMYFIADSEKEKEEWINS 119

Query: 121 IGRAIVQHSRSVTESEVVDYDN 142
           IGR+IVQHSRSVT+SEVVDYDN
Sbjct: 120 IGRSIVQHSRSVTDSEVVDYDN 141

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402122|ref|NP_565687.1| Pleckstrin homology domain-containing protein 1 [Arabidopsis thaliana] gi|54036216|sp|Q9ST43.2|PH1_ARATH RecName: Full=Pleckstrin homology domain-containing protein 1; Short=AtPH1 gi|3582339|gb|AAC35236.1| expressed protein [Arabidopsis thaliana] gi|15215632|gb|AAK91361.1| At2g29700/T27A16.20 [Arabidopsis thaliana] gi|20334886|gb|AAM16199.1| At2g29700/T27A16.20 [Arabidopsis thaliana] gi|21537127|gb|AAM61468.1| AtPH1 [Arabidopsis thaliana] gi|330253201|gb|AEC08295.1| Pleckstrin homology domain-containing protein 1 [Arabidopsis thaliana]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/144 (77%), Positives = 128/144 (88%), Gaps = 1/144 (0%)

Query: 1   MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKD 60
           ME+IWR  +GQDP+ EDY GIEFWSNPERSGWLTKQGDYIKTWRRRWF+LK+GKL WFKD
Sbjct: 1   MESIWRIATGQDPSREDYEGIEFWSNPERSGWLTKQGDYIKTWRRRWFVLKRGKLLWFKD 60

Query: 61  SHNI-TPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWIN 119
                  GSTPRGVI VG CLTV+GAED++NKPFAFELS+G YTM+F+AD EKEKEEWIN
Sbjct: 61  QAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWIN 120

Query: 120 SIGRAIVQHSRSVTESEVVDYDNK 143
           SIGR+IVQHSRSVT+SEV+DYD++
Sbjct: 121 SIGRSIVQHSRSVTDSEVLDYDHR 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059304|ref|XP_002299816.1| predicted protein [Populus trichocarpa] gi|118483582|gb|ABK93688.1| unknown [Populus trichocarpa] gi|222847074|gb|EEE84621.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 110/142 (77%), Positives = 129/142 (90%), Gaps = 1/142 (0%)

Query: 1   MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKD 60
           ME++ R+L+GQDPNP+DY  I+FWS+PERSGWLTKQGDYIKTWRRRWF+LKQGKL WFKD
Sbjct: 1   MESLLRSLTGQDPNPDDYRNIDFWSDPERSGWLTKQGDYIKTWRRRWFVLKQGKLVWFKD 60

Query: 61  SHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINS 120
             N+T GS PRG IPVG CLTV+GAED+LNKP+AFELST + TM+F+AD+EKEKEEWINS
Sbjct: 61  -RNVTRGSIPRGAIPVGKCLTVKGAEDVLNKPYAFELSTSQETMFFIADSEKEKEEWINS 119

Query: 121 IGRAIVQHSRSVTESEVVDYDN 142
           IGR+IVQ SRSVT+SEVVDYD+
Sbjct: 120 IGRSIVQQSRSVTDSEVVDYDS 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434632|ref|XP_002279631.1| PREDICTED: pleckstrin homology domain-containing protein 1 [Vitis vinifera] gi|147863745|emb|CAN83611.1| hypothetical protein VITISV_035612 [Vitis vinifera]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/143 (78%), Positives = 128/143 (89%), Gaps = 1/143 (0%)

Query: 1   MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKD 60
           ME +WRA +G DP PEDY G++FWS PER+GWLTKQG+YIKTWRRRWF+LK+GKLFWFKD
Sbjct: 1   MEGLWRAAAGLDPKPEDYEGVDFWSTPERAGWLTKQGEYIKTWRRRWFVLKRGKLFWFKD 60

Query: 61  SHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINS 120
           S+ +T  S PRGVIPVGTCLTV+GAED+LNK FAFELST   TMYF+AD+EKEKEEWINS
Sbjct: 61  SY-VTHDSKPRGVIPVGTCLTVKGAEDVLNKQFAFELSTNRDTMYFIADSEKEKEEWINS 119

Query: 121 IGRAIVQHSRSVTESEVVDYDNK 143
           IGR+IVQHSRSVT+SEVVDYD K
Sbjct: 120 IGRSIVQHSRSVTDSEVVDYDCK 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5926716|dbj|BAA84651.1| AtPH1 [Arabidopsis thaliana]

 Score =  238 bits (608), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 111/144 (77%), Positives = 128/144 (88%), Gaps = 1/144 (0%)

Query: 1   MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKD 60
           ME++WR  +GQDP+ EDY GIEFWSNPERSGWLTKQGDYIKTWRRRWF+LK+GKL WFKD
Sbjct: 1   MESMWRIATGQDPSREDYEGIEFWSNPERSGWLTKQGDYIKTWRRRWFVLKRGKLLWFKD 60

Query: 61  SHNI-TPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWIN 119
                  GSTPRGVI VG CLTV+GAED++NKPFAFELS+G YTM+F+AD EKEKEEWIN
Sbjct: 61  QAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWIN 120

Query: 120 SIGRAIVQHSRSVTESEVVDYDNK 143
           SIGR+IVQHSRSVT+SEV+DYD++
Sbjct: 121 SIGRSIVQHSRSVTDSEVLDYDHR 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723457|ref|NP_001235232.1| uncharacterized protein LOC100527890 [Glycine max] gi|255633474|gb|ACU17095.1| unknown [Glycine max]

 Score =  232 bits (591), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 106/142 (74%), Positives = 124/142 (87%), Gaps = 1/142 (0%)

Query: 1   MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKD 60
           M ++WRA +G   N  DY G+EFWSNPER+GWLTKQG+YIKTWRRRWF+LKQGKLFWFKD
Sbjct: 1   MASLWRAATGMTDNATDYDGVEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQGKLFWFKD 60

Query: 61  SHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINS 120
           S  +T  S PRGV+PV TCLTV+GAED+LNKP AFELST   TMYF+AD+EKEKE+WINS
Sbjct: 61  SA-VTRASRPRGVVPVATCLTVKGAEDILNKPNAFELSTRSDTMYFIADSEKEKEDWINS 119

Query: 121 IGRAIVQHSRSVTESEVVDYDN 142
           IGR+IVQHSRSVT+SE++DYDN
Sbjct: 120 IGRSIVQHSRSVTDSEIIDYDN 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450806|ref|XP_004143153.1| PREDICTED: pleckstrin homology domain-containing protein 1-like isoform 1 [Cucumis sativus] gi|449530337|ref|XP_004172152.1| PREDICTED: pleckstrin homology domain-containing protein 1-like isoform 1 [Cucumis sativus]

 Score =  231 bits (590), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 107/144 (74%), Positives = 132/144 (91%), Gaps = 2/144 (1%)

Query: 1   MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKD 60
           ME++WRA +GQDP+PEDY G+EFW++PER+GWL KQG+Y++TWRRRWF+LK+GKLFWFKD
Sbjct: 6   MESLWRAATGQDPSPEDYKGVEFWTSPERAGWLNKQGEYLRTWRRRWFVLKRGKLFWFKD 65

Query: 61  SHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELS-TGEYTMYFVADTEKEKEEWIN 119
           S  +T  S PRGVIPV TCLTV+GAED+L+KP AFELS TG+ TMYF+A++E+EKEEWIN
Sbjct: 66  SI-VTRASIPRGVIPVNTCLTVKGAEDILHKPCAFELSTTGQDTMYFIAESEREKEEWIN 124

Query: 120 SIGRAIVQHSRSVTESEVVDYDNK 143
           SIGR+IVQ+SRSVTESEVVDYDN+
Sbjct: 125 SIGRSIVQNSRSVTESEVVDYDNR 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501146|ref|XP_003519389.1| PREDICTED: pleckstrin homology domain-containing protein 1-like [Glycine max]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 105/142 (73%), Positives = 125/142 (88%), Gaps = 1/142 (0%)

Query: 1   MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKD 60
           M ++WRA +G   N  DY G+EFWSNPER+GWLTKQG+YIKTWRRRWF+LKQGKLFWFK+
Sbjct: 1   MASLWRAATGMTENATDYDGVEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE 60

Query: 61  SHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINS 120
           S ++T  S PRGV+PV TCLTV+GAED+LNKP AFELST   TMYF+AD+EKEKE+WINS
Sbjct: 61  S-SVTRASRPRGVVPVATCLTVKGAEDILNKPNAFELSTRSDTMYFIADSEKEKEDWINS 119

Query: 121 IGRAIVQHSRSVTESEVVDYDN 142
           IGR+IVQHSRSVT+SE+VDYD+
Sbjct: 120 IGRSIVQHSRSVTDSEIVDYDS 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2060625	145	PH1 "pleckstrin homologue 1" [	1.0	0.986	0.777	4.3e-61
TAIR|locus:2166349	144	AT5G05710 [Arabidopsis thalian	0.993	0.986	0.736	4.6e-57
UNIPROTKB|F1MCV3	401	CYTH1 "Uncharacterized protein	0.636	0.226	0.362	3.5e-14
UNIPROTKB|Q9UIA0	394	CYTH4 "Cytohesin-4" [Homo sapi	0.461	0.167	0.458	7.4e-14
DICTYBASE|DDB_G0274775	458	phdI "pleckstrin homology (PH)	0.734	0.229	0.381	8.8e-14
UNIPROTKB|F1PGA8	394	CYTH4 "Uncharacterized protein	0.461	0.167	0.458	3.1e-13
ZFIN|ZDB-GENE-030131-4311	399	cyth1b "cytohesin 1b" [Danio r	0.825	0.295	0.357	6.2e-13
UNIPROTKB|F1P496	386	CYTH3 "Uncharacterized protein	0.825	0.305	0.344	2e-12
UNIPROTKB|Q6DF41	397	cyth2 "MGC89034 protein" [Xeno	0.461	0.166	0.452	2.1e-12
ZFIN|ZDB-GENE-030131-657	399	cyth1a "cytohesin 1a" [Danio r	0.818	0.293	0.355	2.8e-12

TAIR|locus:2060625 PH1 "pleckstrin homologue 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 112/144 (77%), Positives = 128/144 (88%)

Query:     1 MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKD 60
             ME+IWR  +GQDP+ EDY GIEFWSNPERSGWLTKQGDYIKTWRRRWF+LK+GKL WFKD
Sbjct:     1 MESIWRIATGQDPSREDYEGIEFWSNPERSGWLTKQGDYIKTWRRRWFVLKRGKLLWFKD 60

Query:    61 SHNI-TPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWIN 119
                    GSTPRGVI VG CLTV+GAED++NKPFAFELS+G YTM+F+AD EKEKEEWIN
Sbjct:    61 QAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWIN 120

Query:   120 SIGRAIVQHSRSVTESEVVDYDNK 143
             SIGR+IVQHSRSVT+SEV+DYD++
Sbjct:   121 SIGRSIVQHSRSVTDSEVLDYDHR 144

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

TAIR|locus:2166349 AT5G05710 [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 106/144 (73%), Positives = 127/144 (88%)

Query:     1 MENIWRA-LSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFK 59
             M ++WRA + GQ+ N EDY G+EFWSNPER+GWLTKQG+YIKTWRRRWF+LKQGKLFWFK
Sbjct:     1 MASLWRAVIGGQNNNSEDYGGVEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQGKLFWFK 60

Query:    60 DSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWIN 119
             DS ++T  S PRGV+PV +CLT +GAED+LNK  AFELST   TMYF+AD+EKEKE+WIN
Sbjct:    61 DS-DVTRVSRPRGVVPVESCLTAKGAEDVLNKQNAFELSTRNETMYFIADSEKEKEDWIN 119

Query:   120 SIGRAIVQHSRSVTESEVVDYDNK 143
             SIGR+IVQ+SRSVT+SE+VDYDNK
Sbjct:   120 SIGRSIVQNSRSVTDSEIVDYDNK 143

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

UNIPROTKB|F1MCV3 CYTH1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 150 (57.9 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
 Identities = 37/102 (36%), Positives = 56/102 (54%)

Query:     1 MENIWRALSGQDPN-PEDYTGIEF---WSNPERSGWLTKQ-GDYIKTWRRRWFILKQGKL 55
             + N++ ++  +    PED  G +    + NP+R GWL K     +KTW+RRWFIL    L
Sbjct:   234 LRNLYESIKNEPFKIPED-DGNDLTHTFFNPDREGWLLKLVSGRVKTWKRRWFILTDNCL 292

Query:    56 FWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFEL 97
             ++F+     T    PRG+IP+   L++R  ED  N+   FEL
Sbjct:   293 YYFE----YTTDKEPRGIIPLEN-LSIREVEDSKNQKNCFEL 329

GO:0090162 "establishment of epithelial cell polarity" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|Q9UIA0 CYTH4 "Cytohesin-4" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
 Identities = 33/72 (45%), Positives = 44/72 (61%)

Query:    26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
             NP+R GWL K G  +KTW+RRWFIL    L++F+     T    PRG+IP+   L+V+  
Sbjct:   259 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE----FTTDKEPRGIIPLEN-LSVQKV 313

Query:    86 EDLLNKPFAFEL 97
             +D   KPF  EL
Sbjct:   314 DDP-KKPFCLEL 324

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=IBA

GO:0030155 "regulation of cell adhesion" evidence=IBA

GO:0005886 "plasma membrane" evidence=IDA

DICTYBASE|DDB_G0274775 phdI "pleckstrin homology (PH) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 186 (70.5 bits), Expect = 8.8e-14, P = 8.8e-14
 Identities = 42/110 (38%), Positives = 62/110 (56%)

Query:    15 PEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVI 74
             PE    +   +  +R GWLTKQG  I+TWRRRWF+LK  KLF+FK   +I   +T  G+I
Sbjct:     4 PELKVSVSQLAPSDREGWLTKQGGSIRTWRRRWFVLKGKKLFYFKSKGDIE--AT--GLI 59

Query:    75 PVGTCLTVRGAEDL-LNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGR 123
              +     V+  +D    K + F + T +   Y  A+TE + ++W+ SI R
Sbjct:    60 ELEQNSFVKEEKDKDKKKKYMFTVGTSKRVFYIFAETETDMKQWMESIKR 109

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1PGA8 CYTH4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 159 (61.0 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
 Identities = 33/72 (45%), Positives = 44/72 (61%)

Query:    26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
             NP+R GWL K G  +KTW+RRWFIL    L++F+     T    PRG+IP+   L+V+  
Sbjct:   259 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE----FTTDKEPRGIIPLEN-LSVQKV 313

Query:    86 EDLLNKPFAFEL 97
             +D   KPF  EL
Sbjct:   314 DDP-KKPFCLEL 324

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

ZFIN|ZDB-GENE-030131-4311 cyth1b "cytohesin 1b" [Danio rerio (taxid:7955)]

 Score = 177 (67.4 bits), Expect = 6.2e-13, P = 6.2e-13
 Identities = 54/151 (35%), Positives = 76/151 (50%)

Query:     1 MENIWRALSGQDPN-PEDYTGIEF---WSNPERSGWLTKQGDYIKTWRRRWFILKQGKLF 56
             + N++ ++  +    PED  G +    + NP+R GWL K G  +KTW+RRWFIL    L+
Sbjct:   234 LRNLYESIKNEPFKIPED-DGNDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLY 292

Query:    57 WFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFEL-------------ST---- 99
             +F+     T    PRG+IP+   L++R  ED   KP  FEL              T    
Sbjct:   293 YFE----YTTDKEPRGIIPLEN-LSIREVEDS-KKPNCFELFIPDNKDQVIKACKTEADG 346

Query:   100 ----GEYTMYFV-ADTEKEKEEWINSIGRAI 125
                 G +T Y + A T +EKE+WI SI  AI
Sbjct:   347 RVVEGNHTFYRISAPTTEEKEDWIKSIKSAI 377

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

UNIPROTKB|F1P496 CYTH3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 52/151 (34%), Positives = 75/151 (49%)

Query:     1 MENIWRALSGQDPN-PEDYTGIEF---WSNPERSGWLTKQGDYIKTWRRRWFILKQGKLF 56
             + N++ ++  +    PED  G +    + NP+R GWL K G  +KTW+RRWFIL    L+
Sbjct:   223 LRNLYESIKNEPFKIPED-DGNDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLY 281

Query:    57 WFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELST----------------- 99
             +F+     T    PRG+IP+   L++R  ED   KP  FEL                   
Sbjct:   282 YFE----YTTDKEPRGIIPLEN-LSIREVEDP-RKPNCFELYNPSHKGQVIKACKTEADG 335

Query:   100 ----GEYTMYFV-ADTEKEKEEWINSIGRAI 125
                 G + +Y + A T +EKEEWI SI  +I
Sbjct:   336 RVVEGNHVVYRISAPTPEEKEEWIKSIKASI 366

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

UNIPROTKB|Q6DF41 cyth2 "MGC89034 protein" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 144 (55.7 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
 Identities = 33/73 (45%), Positives = 43/73 (58%)

Query:    26 NPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
             NP+R GWL K G   +KTW+RRWFIL    L++F+     T    PRG+IP+   L++R 
Sbjct:   259 NPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIRE 313

Query:    85 AEDLLNKPFAFEL 97
              ED   K   FEL
Sbjct:   314 VEDS-KKMNCFEL 325

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

GO:0030155 "regulation of cell adhesion" evidence=IBA

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=IBA

ZFIN|ZDB-GENE-030131-657 cyth1a "cytohesin 1a" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 2.8e-12, P = 2.8e-12
 Identities = 54/152 (35%), Positives = 77/152 (50%)

Query:     1 MENIWRALSGQDPN-PEDYTGIEF---WSNPERSGWLTKQGD-YIKTWRRRWFILKQGKL 55
             + N++ ++  +    PED  G +    + NP+R GWL K G   +KTW+RRWFIL    L
Sbjct:   234 LRNLYESIKNEPFKIPED-DGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCL 292

Query:    56 FWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFEL-------------ST--- 99
             ++F+     T    PRG+IP+   L++R  ED   KP  FEL              T   
Sbjct:   293 YYFE----YTTDKEPRGIIPLEN-LSIREVED--KKPNCFELFIPDNKDQVIKACKTEAD 345

Query:   100 -----GEYTMYFV-ADTEKEKEEWINSIGRAI 125
                  G +T Y + A T +EK+EW+NSI  AI
Sbjct:   346 GRVVEGNHTFYRISAPTTEEKDEWMNSIKAAI 377

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA;IBA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IBA

GO:0030155 "regulation of cell adhesion" evidence=IBA

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=IBA

GO:0050790 "regulation of catalytic activity" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ST43	PH1_ARATH	No assigned EC number	0.7777	1.0	0.9862	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0001107301 hypothetical protein (143 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	3e-59
cd01252	118	cd01252, PH_GRP1-like, General Receptor for Phosph	2e-22
cd13282	96	cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology	4e-21
cd13248	104	cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate	2e-20
smart00233	102	smart00233, PH, Pleckstrin homology domain	3e-20
pfam00169	101	pfam00169, PH, PH domain	9e-20
cd13271	114	cd13271, PH2_TAPP1_2, Tandem PH-domain-containing	1e-18
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	2e-17
cd13308	113	cd13308, PH_3BP2, SH3 domain-binding protein 2 Ple	5e-17
cd10573	96	cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosin	9e-17
cd13301	108	cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin	1e-16
cd13250	98	cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin	4e-14
cd13281	139	cd13281, PH_PLEKHD1, Pleckstrin homology (PH) doma	1e-13
cd13215	130	cd13215, PH-GRAM1_AGT26, Autophagy-related protein	1e-13
cd13296	111	cd13296, PH2_MyoX, Myosin X Pleckstrin homology (P	1e-13
cd13288	120	cd13288, PH_Ses, Sesquipedalian family Pleckstrin	3e-13
cd13255	110	cd13255, PH_TAAP2-like, Tandem PH-domain-containin	3e-13
cd13263	114	cd13263, PH_RhoGap25-like, Rho GTPase activating p	6e-12
cd13379	114	cd13379, PH_RhoGap24, Rho GTPase activating protei	2e-11
cd13298	106	cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin	2e-11
cd01251	105	cd01251, PH2_ADAP, ArfGAP with dual PH domains Ple	7e-11
cd01241	121	cd01241, PH_PKB, Protein Kinase B-like pleckstrin	4e-10
cd13292	103	cd13292, PH_Osh1p_Osh2p_yeast, Yeast oxysterol bin	8e-10
cd01257	106	cd01257, PH_IRS, Insulin receptor substrate (IRS)	9e-10
cd01238	140	cd01238, PH_Btk, Bruton's tyrosine kinase pleckstr	3e-09
cd13284	99	cd13284, PH_OSBP_ORP4, Human Oxysterol binding pro	8e-09
cd13273	110	cd13273, PH_SWAP-70, Switch-associated protein-70	9e-09
cd01235	106	cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (als	3e-08
cd13275	103	cd13275, PH_M-RIP, Myosin phosphatase-RhoA Interac	4e-08
cd13253	93	cd13253, PH1_ARAP, ArfGAP with RhoGAP domain, anky	5e-08
cd13293	88	cd13293, PH_CpORP2-like, Cryptosporidium-like Oxys	5e-08
cd01265	101	cd01265, PH_TBC1D2A, TBC1 domain family member 2A	5e-08
cd01266	123	cd01266, PH_Gab1_Gab2, Grb2-associated binding pro	6e-08
cd13384	115	cd13384, PH_Gab2_2, Grb2-associated binding protei	6e-08
cd13378	116	cd13378, PH_RhoGAP2, Rho GTPase activating protein	6e-08
cd13316	95	cd13316, PH_Boi, Boi family Pleckstrin homology do	7e-08
cd13385	125	cd13385, PH_Gab3, Grb2-associated binding protein	7e-08
cd13234	105	cd13234, PHsplit_PLC_gamma, Phospholipase C-gamma	7e-08
cd13272	116	cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bis	8e-08
cd01260	114	cd01260, PH_CNK_mammalian-like, Connector enhancer	9e-08
cd13260	103	cd13260, PH_RASA1, RAS p21 protein activator (GTPa	1e-07
cd13324	103	cd13324, PH_Gab-like, Grb2-associated binding prot	1e-07
cd13283	100	cd13283, PH_GPBP, Goodpasture antigen binding prot	4e-07
cd01233	111	cd01233, PH_KIFIA_KIFIB, KIFIA and KIFIB protein p	7e-07
cd13326	90	cd13326, PH_CNK_insect-like, Connector enhancer of	1e-06
cd13267	125	cd13267, PH_DOCK-D, Dedicator of cytokinesis-D sub	2e-06
cd13302	109	cd13302, PH2_Pleckstrin_2, Pleckstrin 2 Pleckstrin	3e-06
cd13309	103	cd13309, PH_SKIP, SifA and kinesin-interacting pro	1e-05
cd01236	136	cd01236, PH_RIP, Rho-Interacting Protein Pleckstri	1e-05
cd13251	108	cd13251, PH_ASAP, ArfGAP with SH3 domain, ankyrin	2e-05
cd01254	134	cd01254, PH_PLD, Phospholipase D pleckstrin homolo	2e-05
cd01247	100	cd01247, PH_FAPP1_FAPP2, Four phosphate adaptor pr	3e-05
cd01263	119	cd01263, PH_anillin, Anillin Pleckstrin homology (	4e-05
cd13270	118	cd13270, PH1_TAPP1_2, Tandem PH-domain-containing	4e-05
cd13238	96	cd13238, PH2_FGD4_insect-like, FYVE, RhoGEF and PH	1e-04
cd13265	108	cd13265, PH_evt, Evectin Pleckstrin homology (PH)	2e-04
cd13258	144	cd13258, PH_PLEKHJ1, Pleckstrin homology domain co	2e-04
cd13297	123	cd13297, PH3_MyoX-like, Myosin X-like Pleckstrin h	3e-04
cd13317	101	cd13317, PH_PLEKHO1_PLEKHO2, Pleckstrin homology d	3e-04
cd13278	139	cd13278, PH_Bud4, Bud4 Pleckstrin homology (PH) do	4e-04
cd13249	111	cd13249, PH_anillin_2, Anillin Pleckstrin homology	4e-04
cd13291	107	cd13291, PH_ORP10_ORP11, Human Oxysterol binding p	5e-04
cd13274	97	cd13274, PH_DGK_type2, Type 2 Diacylglycerol kinas	6e-04
cd01253	113	cd01253, PH_ARHGAP21-like, ARHGAP21 and related pr	0.001
cd13237	90	cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain	0.001
cd13290	102	cd13290, PH_ORP9, Human Oxysterol binding protein	0.001
cd13370	133	cd13370, PH_GAP1m_mammal-like, GTPase activating p	0.002
cd13261	136	cd13261, PH_RasGRF1_2, Ras-specific guanine nucleo	0.002
cd01244	107	cd01244, PH_GAP1-like, RAS p21 protein activator (	0.003
cd13262	124	cd13262, PH_RasSynGAP-like, Synaptic Ras-GTPase ac	0.003
cd13269	106	cd13269, PH_alsin, Alsin Pleckstrin homology (PH)	0.003
cd13236	105	cd13236, PH2_FGD1-4, FYVE, RhoGEF and PH domain co	0.004
cd13280	105	cd13280, PH_SIP3, Snf1p-interacting protein 3 Plec	0.004

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score =  178 bits (454), Expect = 3e-59
 Identities = 79/120 (65%), Positives = 95/120 (79%), Gaps = 4/120 (3%)

Query: 21  IEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCL 80
           +EFWS+PE++GWLTKQG  IKTWRRRWF+LKQGKLF+FKD     P S PRGVI +  CL
Sbjct: 1   VEFWSDPEKAGWLTKQGGSIKTWRRRWFVLKQGKLFYFKDE---DPDSEPRGVIDLSDCL 57

Query: 81  TVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS-VTESEVVD 139
           TV+ AE+  NK FAFE+ST E T Y +AD+EKEKEEWI++IGRAIV+ SRS  T  EV+D
Sbjct: 58  TVKSAEEATNKEFAFEVSTPERTFYLIADSEKEKEEWISAIGRAIVKLSRSKGTIDEVLD 117

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241283 cd01252, PH_GRP1-like, General Receptor for Phosphoinositides-1-like Pleckstrin homology (PH) domain

 Score = 85.4 bits (212), Expect = 2e-22
 Identities = 48/120 (40%), Positives = 63/120 (52%), Gaps = 26/120 (21%)

Query: 26  NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
           NP+R GWL K G  +K+W+RRWFIL    L++F+     T    PRG+IP+   L+VR  
Sbjct: 2   NPDREGWLLKLGGRVKSWKRRWFILTDNCLYYFEY----TTDKEPRGIIPLEN-LSVREV 56

Query: 86  EDLLNKPFAFEL-------------------STGEYTMYF-VADTEKEKEEWINSIGRAI 125
           ED   KPF FEL                     G +T+Y   A TE+E +EWI SI  +I
Sbjct: 57  ED-SKKPFCFELYSPSNEVIKACKTDSDGKVVEGNHTVYRISAATEEEMDEWIKSIKASI 115

GRP1/cytohesin3 and the related proteins ARNO (ARF nucleotide-binding site opener)/cytohesin-2 and cytohesin-1 are ARF exchange factors that contain a pleckstrin homology (PH) domain thought to target these proteins to cell membranes through binding polyphosphoinositides. The PH domains of all three proteins exhibit relatively high affinity for PtdIns(3,4,5)P3. Within the Grp1 family, diglycine (2G) and triglycine (3G) splice variants, differing only in the number of glycine residues in the PH domain, strongly influence the affinity and specificity for phosphoinositides. The 2G variants selectively bind PtdIns(3,4,5)P3 with high affinity,the 3G variants bind PtdIns(3,4,5)P3 with about 30-fold lower affinity and require the polybasic region for plasma membrane targeting. These ARF-GEFs share a common, tripartite structure consisting of an N-terminal coiled-coil domain, a central domain with homology to the yeast protein Sec7, a PH domain, and a C-terminal polybasic region. The Sec7 domain is autoinhibited by conserved elements proximal to the PH domain. GRP1 binds to the DNA binding domain of certain nuclear receptors (TRalpha, TRbeta, AR, ER, but not RXR), and can repress thyroid hormone receptor (TR)-mediated transactivation by decreasing TR-complex formation on thyroid hormone response elements. ARNO promotes sequential activation of Arf6, Cdc42 and Rac1 and insulin secretion. Cytohesin acts as a PI 3-kinase effector mediating biological responses including cell spreading and adhesion, chemotaxis, protein trafficking, and cytoskeletal rearrangements, only some of which appear to depend on their ability to activate ARFs. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 118

>gnl|CDD|241436 cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) members 1 and 2 (PLEKHH1) PH domain, repeat 1

 Score = 81.2 bits (201), Expect = 4e-21
 Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 8/94 (8%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPV-GTCLTVRGAED 87
           ++G+LTK G  +KTW+RRWF+LK G+LF++K  +++     P+G I + G+C   R    
Sbjct: 1   KAGYLTKLGGKVKTWKRRWFVLKNGELFYYKSPNDV--IRKPQGQIALDGSCEIARAEGA 58

Query: 88  LLNKPFAFELSTGEYTMYFVADTEKEKEEWINSI 121
                  FE+ T + T Y  AD+E + +EWI  I
Sbjct: 59  Q-----TFEIVTEKRTYYLTADSENDLDEWIRVI 87

PLEKHH1 and PLEKHH2 (also called PLEKHH1L) are thought to function in phospholipid binding and signal transduction. There are 3 Human PLEKHH genes: PLEKHH1, PLEKHH2, and PLEKHH3. There are many isoforms, the longest of which contain a FERM domain, a MyTH4 domain, two PH domains, a peroximal domain, a vacuolar domain, and a coiled coil stretch. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain

 Score = 79.6 bits (197), Expect = 2e-20
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 25  SNPERSGWLTKQGDY-IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPV-GTCLTV 82
           +    SGWL KQG   +K W++RWF+LK   L+++KD           G I +    ++ 
Sbjct: 5   APVVFSGWLHKQGGSGLKNWKKRWFVLKDNCLYYYKDPEEE----KALGSILLPSYTISP 60

Query: 83  RGAEDLLNKPFAFELS-TGEYTMYFVADTEKEKEEWINSIGRA 124
               D +N+ FAF+    G  T YF ADT++E E+W+ ++  A
Sbjct: 61  ASPSDEINRKFAFKAEHAGMRTYYFAADTQEEMEQWMKALSLA 103

PEPP1 (also called PLEKHA4/PH domain-containing family A member 4 and RHOXF1/Rhox homeobox family member 1), and related homologs PEPP2 (also called PLEKHA5/PH domain-containing family A member 5) and PEPP3 (also called PLEKHA6/PH domain-containing family A member 6), have PH domains that interact specifically with PtdIns(3,4)P3. Other proteins that bind PtdIns(3,4)P3 specifically are: TAPP1 (tandem PH-domain-containing protein-1) and TAPP2], PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2). All of these proteins contain at least 5 of the 6 conserved amino acids that make up the putative phosphatidylinositol 3,4,5- trisphosphate-binding motif (PPBM) located at their N-terminus. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 104

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 79.5 bits (196), Expect = 3e-20
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 4/102 (3%)

Query: 27  PERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTC-LTVRG 84
             + GWL K+     K+W++R+F+L    L ++K   +      P+G I +  C +    
Sbjct: 1   VIKEGWLYKKSGGGKKSWKKRYFVLFNSTLLYYKSKKD-KKSYKPKGSIDLSGCTVREAP 59

Query: 85  AEDLLNKPFAFELSTGE-YTMYFVADTEKEKEEWINSIGRAI 125
             D   KP  FE+ T +  T+   A++E+E+E+W+ ++ +AI
Sbjct: 60  DPDSSKKPHCFEIKTSDRKTLLLQAESEEEREKWVEALRKAI 101

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 77.9 bits (192), Expect = 9e-20
 Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 5/102 (4%)

Query: 27  PERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTC-LTVRG 84
             + GWL K+G    K+W++R+F+L  G L ++KDS      S P+G IP+  C +T   
Sbjct: 1   VIKEGWLLKKGSGGRKSWKKRYFVLFDGVLLYYKDSK--KSSSRPKGSIPLSGCQVTKVP 58

Query: 85  AEDLLNKPFAFELSTGE-YTMYFVADTEKEKEEWINSIGRAI 125
             +   +   FE+ TG+  T    A++E+E++EW+ +I  AI
Sbjct: 59  DSEDGKRKNCFEIRTGDRETFLLQAESEEERKEWVKAIRSAI 100

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|241425 cd13271, PH2_TAPP1_2, Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, C-terminal repeat

 Score = 75.4 bits (186), Expect = 1e-18
 Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGST--PRGVIPVGTCLTV 82
            N  +SG+  KQG   K W+RR+FIL    + ++K   +  P  T   + V+ V  CL+ 
Sbjct: 6   RNVIKSGYCVKQGAVRKNWKRRYFILDDNTISYYKSETDKEPLRTIPLKEVLKVHECLS- 64

Query: 83  RGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTES 135
               DLL +   FE+ T   T Y  AD+ ++   WI +I  AIV        S
Sbjct: 65  ---GDLLMRDNLFEIITTSRTFYIQADSPEDMHSWIKAISGAIVARRGPYRSS 114

The binding of TAPP1 (also called PLEKHA1/pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1) and TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP1 and TAPP2 contain two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 71.6 bits (175), Expect = 2e-17
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 29  RSGWLTKQGDY-IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED 87
           + GWL K+G   +K+W++RWF+L    L ++K          P+G+IP+   L V     
Sbjct: 1   KEGWLKKRGGKGLKSWKKRWFVLFDDVLLYYKSKK--DSSKKPKGLIPLSDGLEVELVSS 58

Query: 88  LLNKPFAFELSTGEY--TMYFVADTEKEKEEWINS 120
              KP  FEL T +   T Y  A++E+E+EEW+ +
Sbjct: 59  -SGKPNCFELVTPDRGRTYYLQAESEEEREEWLEA 92

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|241462 cd13308, PH_3BP2, SH3 domain-binding protein 2 Pleckstrin homology (PH) domain

 Score = 71.3 bits (175), Expect = 5e-17
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 12/108 (11%)

Query: 29  RSGWLTKQGDYIKT---WRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
            SG+LTK+G   K    W  R+ I+ +G +++FK+S +    + P+GV  +      R A
Sbjct: 11  HSGYLTKKGGSQKQLLKWPLRYVIIHKGCVYYFKNSQS----AKPKGVFSL-NGYNRRAA 65

Query: 86  EDL-LNKPFAFEL---STGEYTMYFVADTEKEKEEWINSIGRAIVQHS 129
           E+    K F F++   S    T YF A +E E +EW+ S+ + I ++ 
Sbjct: 66  EETTSKKKFVFKIIHLSKDHRTWYFSAKSEDEMKEWMESLRKEIDRYC 113

SH3BP2 (the gene that encodes the adaptor protein 3BP2), HD, ITU, IT10C3, and ADD1 are located near the Huntington's Disease Gene on Human Chromosome 4pl6.3. SH3BP2 lies in a region that is often missing in individuals with Wolf-Hirschhorn syndrome (WHS). Gain of function mutations in SH3BP2 causes enhanced B-cell antigen receptor (BCR)-mediated activation of nuclear factor of activated T cells (NFAT), resulting in a rare, genetic disorder called cherubism. This results in an increase in the signaling complex formation with Syk, phospholipase C-gamma2 (PLC-gamma2), and Vav1. It was recently discovered that Tankyrase regulates 3BP2 stability through ADP-ribosylation and ubiquitylation by the E3-ubiquitin ligase. Cherubism mutations uncouple 3BP2 from Tankyrase-mediated protein destruction, which results in its stabilization and subsequent hyperactivation of the Src, Syk, and Vav signaling pathways. SH3BP2 is also a potential negative regulator of the abl oncogene. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241309 cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosine and 3-Phosphoinositides Pleckstrin homology (PH) domain

 Score = 70.0 bits (172), Expect = 9e-17
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 7/94 (7%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGST-PRGVIPVGTCLTVRGAED 87
           + G+LTKQG  +K W+ RWF+L++ +L +FK     T   T P   + +  C +V  A+ 
Sbjct: 5   KEGYLTKQGGIVKNWKTRWFVLRKNELKYFK-----TRTDTKPIRTLDLTECSSV-QADY 58

Query: 88  LLNKPFAFELSTGEYTMYFVADTEKEKEEWINSI 121
              KP  F L   + T Y  A TE+E +EW+  +
Sbjct: 59  SQGKPNCFRLVFPDRTFYMYAKTEEEADEWVKLL 92

DAPP1 (also known as PHISH/3' phosphoinositide-interacting SH2 domain-containing protein or Bam32) plays a role in B-cell activation and has potential roles in T-cell and mast cell function. DAPP1 promotes B cell receptor (BCR) induced activation of Rho GTPases Rac1 and Cdc42, which feed into mitogen-activated protein kinases (MAPK) activation pathways and affect cytoskeletal rearrangement. DAPP1can also regulate BCR-induced activation of extracellular signal-regulated kinase (ERK), and c-jun NH2-terminal kinase (JNK). DAPP1 contains an N-terminal SH2 domain and a C-terminal pleckstrin homology (PH) domain with a single tyrosine phosphorylation site located centrally. DAPP1 binds strongly to both PtdIns(3,4,5)P3 and PtdIns(3,4)P2. The PH domain is essential for plasma membrane recruitment of PI3K upon cell activation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241455 cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH) domain, repeat 1

 Score = 70.5 bits (173), Expect = 1e-16
 Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 5/99 (5%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           + G+L K+G  +  W+ RWF+L + KL ++K   +    S+P+G+I +  C       + 
Sbjct: 5   KEGFLVKKGHVVNNWKARWFVLLEDKLEYYKKKTD----SSPKGMILLKGCTITSPCLEY 60

Query: 89  LNKPFAFELSTGEYTMYFV-ADTEKEKEEWINSIGRAIV 126
             +P  F+L+T +   +F+ A + +E++ W   I +AI 
Sbjct: 61  EKRPLVFKLTTAKGQDHFLQACSREERDAWAKDITKAIT 99

Pleckstrin is a protein found in platelets. This name is derived from platelet and leukocyte C kinase substrate and the KSTR string of amino acids. Pleckstrin 2 contains two PH domains and a DEP (dishvelled, egl-10, and pleckstrin) domain. Unlike pleckstrin 1, pleckstrin 2 does not contain obvious sites of PKC phosphorylation. Pleckstrin 2 plays a role in actin rearrangement, large lamellipodia and peripheral ruffle formation, and may help orchestrate cytoskeletal arrangement. The PH domains of pleckstrin 2 are thought to contribute to lamellipodia formation. This cd contains the first PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241404 cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain

 Score = 63.4 bits (155), Expect = 4e-14
 Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 6/98 (6%)

Query: 29  RSGWLTKQ-GDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED 87
           + G+L K+  +  KTW+RRWF ++ G+L + K     TP      V  +  C TV+  ED
Sbjct: 1   KEGYLFKRSSNAFKTWKRRWFSIQNGQLVYQKRFKKDTPTVV---VEDLRLC-TVKPCED 56

Query: 88  LLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
            +++ F FE+ +   +    A++E++++ WI +I  AI
Sbjct: 57  -IDRRFCFEVVSPTKSYMLQAESEEDRQAWIQAIQAAI 93

ACAP (also called centaurin beta) functions both as a Rab35 effector and as an Arf6-GTPase-activating protein (GAP) by which it controls actin remodeling and membrane trafficking. ACAP contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain, a phospholipid-binding domain, a PH domain, a GAP domain, and four ankyrin repeats. The AZAPs constitute a family of Arf GAPs that are characterized by an NH2-terminal pleckstrin homology (PH) domain and a central Arf GAP domain followed by two or more ankyrin repeats. On the basis of sequence and domain organization, the AZAP family is further subdivided into four subfamilies: 1) the ACAPs contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain (a phospholipid-binding domain that is thought to sense membrane curvature), a single PH domain followed by the GAP domain, and four ankyrin repeats; 2) the ASAPs also contain an NH2-terminal BAR domain, the tandem PH domain/GAP domain, three ankyrin repeats, two proline-rich regions, and a COOH-terminal Src homology 3 domain; 3) the AGAPs contain an NH2-terminal GTPase-like domain (GLD), a split PH domain, and the GAP domain followed by four ankyrin repeats; and 4) the ARAPs contain both an Arf GAP domain and a Rho GAP domain, as well as an NH2-terminal sterile-a motif (SAM), a proline-rich region, a GTPase-binding domain, and five PH domains. PMID 18003747 and 19055940 Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 98

>gnl|CDD|241435 cd13281, PH_PLEKHD1, Pleckstrin homology (PH) domain containing, family D (with coiled-coil domains) member 1 PH domain

 Score = 63.1 bits (154), Expect = 1e-13
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 12/104 (11%)

Query: 28  ERSGWLTKQ--GDYIKTWRRRWFILKQGKLFWFKDSHNITPGST------PRGVIPVGTC 79
           + SG L K+  G     W +R+F+LK+  L ++ +S       T      P+GVIP+G C
Sbjct: 13  QLSGVLWKRPFGRQSAKWSKRFFVLKECFLLYYAESEKKDFEKTRRFNIHPKGVIPLGGC 72

Query: 80  LTVRGAEDLLNKPFAFELSTGEYT--MYFVADTEKEKEEWINSI 121
               G +    +P+ F +S  ++   +   AD+E+E+E W++ +
Sbjct: 73  SIEAGRDP--GRPYCFLISHPDFKGSIILAADSEEEQESWLDML 114

Human PLEKHD1 (also called UPF0639, pleckstrin homology domain containing, family D (with M protein repeats) member 1) is a single transcript and contains a single PH domain. PLEKHD1 is conserved in human, chimpanzee, , dog, cow, mouse, chicken, zebrafish, and Caenorhabditis elegans. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 139

>gnl|CDD|241369 cd13215, PH-GRAM1_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 1

 Score = 63.0 bits (154), Expect = 1e-13
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           +SG+L+K+G     + R WF+LK   L W++ S ++     P G I +   ++     D 
Sbjct: 31  KSGYLSKRGKRTPRYNRYWFVLKGDVLSWYRSSTDLY---FPHGTIDLRYGISAE-ITDK 86

Query: 89  LNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
             +   F+++T   T  F AD+E   +EW+ ++ + I
Sbjct: 87  DKETTHFKITTNSRTYTFKADSEPSAKEWVKALQKVI 123

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 130

>gnl|CDD|241450 cd13296, PH2_MyoX, Myosin X Pleckstrin homology (PH) domain, repeat 2

 Score = 62.4 bits (152), Expect = 1e-13
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 16/114 (14%)

Query: 29  RSGWLTKQGDYI-----KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR 83
           +SGWL K+G        K W+ RWF+L+   L +++   N   G+   G I + +   + 
Sbjct: 9   KSGWLYKKGGGSSTLSRKNWKSRWFVLRDTVLKYYE---NDQEGAKALGTIDIRSAKEIV 65

Query: 84  GAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESEV 137
              D   K   F+++T   T +FVA++ ++  +W + + R       S TE E+
Sbjct: 66  ---DNTPKENGFDITTPSRTYHFVAESPEDASQWFSVLTRVH-----SATEQEI 111

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241442 cd13288, PH_Ses, Sesquipedalian family Pleckstrin homology (PH) domain

 Score = 61.9 bits (151), Expect = 3e-13
 Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 14/105 (13%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWF--KDSHNITPGSTPRGVIPVGTCLTV 82
           S  ++ G+L K+G+   ++++RWF+LK   LF+F  K          P GVI +  C TV
Sbjct: 6   SPVDKEGYLWKKGERNTSYQKRWFVLKGNLLFYFEKKGDR------EPLGVIVLEGC-TV 58

Query: 83  RGAEDLLNKPFAFEL---STGEYTMYFVADTEKEKEEWINSIGRA 124
             +ED   +P+AF +     G  +    A+++++ E W+ ++ RA
Sbjct: 59  ELSED--EEPYAFAIRFDGPGSRSYVLAAESQEDMESWMKALSRA 101

The sesquipedalian family has 2 mammalian members: Ses1 and Ses2, which are also callled 7 kDa inositol polyphosphate phosphatase-interacting protein 1 and 2. They play a role in endocytic trafficking and are required for receptor recycling from endosomes, both to the trans-Golgi network and the plasma membrane. Members of this family form homodimers and heterodimers. Sesquipedalian interacts with inositol polyphosphate 5-phosphatase OCRL-1 (INPP5F) also known as Lowe oculocerebrorenal syndrome protein, a phosphatase enzyme that is involved in actin polymerization and is found in the trans-Golgi network and INPP5B. Sesquipedalian contains a single PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|241409 cd13255, PH_TAAP2-like, Tandem PH-domain-containing protein 2 Pleckstrin homology (PH) domain

 Score = 61.7 bits (150), Expect = 3e-13
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 11/108 (10%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVG---TCLTVRGA 85
           ++G+L K+G+  KTW++RWF+L+  KL ++K+          R +I +    TC  V   
Sbjct: 8   KAGYLEKKGERRKTWKKRWFVLRPTKLAYYKNDKEY---RLLR-LIDLTDIHTCTEV--- 60

Query: 86  EDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVT 133
             L      F + T   T Y  AD++ E E WI++I  A      ++T
Sbjct: 61  -QLKKHDNTFGIVTPARTFYVQADSKAEMESWISAINLARQALRATIT 107

The binding of TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP2 contains two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. The members here are most sequence similar to TAPP2 proteins, but may not be actual TAPP2 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241417 cd13263, PH_RhoGap25-like, Rho GTPase activating protein 25 and related proteins Pleckstrin homology (PH) domain

 Score = 58.1 bits (141), Expect = 6e-12
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 16/114 (14%)

Query: 27  PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE 86
             +SGWL KQG  +K W+RRWF+L+  +L+++KD       S P+G IP+    TV+   
Sbjct: 3   VIKSGWLKKQGGIVKNWQRRWFVLRGDQLYYYKDEDE----SKPQGCIPLPGN-TVKELP 57

Query: 87  DLLNKP--FAFEL--------STGEYTMYFV-ADTEKEKEEWINSIGRAIVQHS 129
               +P  F FE+         +  +  Y + A+++ E EEW+  I R I    
Sbjct: 58  FNPEEPGKFLFEIIPGDGGTRRSANHDSYLLMANSQAEMEEWVKVIRRVIGSPF 111

RhoGAP25 (also called ArhGap25) like other RhoGaps are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. This hierarchy contains RhoGAP22, RhoGAP24, and RhoGAP25. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241530 cd13379, PH_RhoGap24, Rho GTPase activating protein 24 Pleckstrin homology (PH) domain

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           + GWL KQG ++KTW  RWF+LK  +L++FKD     P  T   +   G  +T     + 
Sbjct: 5   KCGWLRKQGGFVKTWHTRWFVLKGDQLYYFKDEDETKPLGT---IFLPGNRVTEHPCNEE 61

Query: 89  LNKPFAFELSTG---------EYTMYFVADTEKEKEEWINSIGRAI 125
               F FE+  G           T   +A T+ + E+W+ SI R I
Sbjct: 62  EPGKFLFEVVPGGDRERMTANHETYLLMASTQNDMEDWVKSIRRVI 107

RhoGap24 (also called ARHGAP24, p73RhoGAp, and Filamin-A-associated RhoGAP) like other RhoGAPs are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241452 cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 1

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 9/107 (8%)

Query: 30  SGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLL 89
           SGWL K+    KTW++RWF+L+  +L ++KD          R VI +     V   +D  
Sbjct: 9   SGWLLKRSRKTKTWKKRWFVLRPCQLSYYKDEKE----YKLRRVINLSELTAVAPLKD-K 63

Query: 90  NKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESE 136
            +   F + T     +F A +EK+  EW+     AI + SRS  E E
Sbjct: 64  KRKNVFAIYTPSKNYHFQASSEKDANEWVE----AIREESRSRDEEE 106

The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the first PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241282 cd01251, PH2_ADAP, ArfGAP with dual PH domains Pleckstrin homology (PH) domain, repeat 2

 Score = 55.3 bits (134), Expect = 7e-11
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 17/107 (15%)

Query: 29  RSGWLTKQGDYIKT-WRRRWFILKQGKLFWFK---DSHNITPGSTPRGVIPVGTCL---T 81
           + G+L K G      +R+RWF L   +L +FK   D+        P+G I +G+     +
Sbjct: 4   KEGYLEKTGPKQTDGFRKRWFTLDDRRLMYFKDPLDAF-------PKGEIFIGSKEEGYS 56

Query: 82  VR-GAEDLLNK--PFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
           VR G    +     F F L T + T    A+TE+E+ EWI +I + +
Sbjct: 57  VREGLPAGIKGHWGFGFTLVTPDRTFVLSAETEEERREWITAIQKVL 103

ADAP (also called centaurin alpha) is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. This cd contains the second PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|241274 cd01241, PH_PKB, Protein Kinase B-like pleckstrin homology (PH) domain

 Score = 53.5 bits (129), Expect = 4e-10
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 21/90 (23%)

Query: 31  GWLTKQGDYIKTWRRRWFILK--QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           GWLTK+G+YIKTWR RWF+LK   GK   +K+         P+      T          
Sbjct: 7   GWLTKRGEYIKTWRPRWFVLKSDDGKFKGYKEK--------PQDKDVDPTP--------- 49

Query: 89  LNKPFAFELSTGEYTMYFVADTEKEKEEWI 118
                 F ++    T     +  KE  E  
Sbjct: 50  -KPLNNFSVAIKR-TYLIKTEKPKEVIENT 77

PKB (also called Akt), a member of the AGC kinase family, is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase which alters the activity of the targeted protein. The name AGC is based on the three proteins that it is most similar to cAMP-dependent protein kinase 1 (PKA; also known as PKAC), cGMP-dependent protein kinase (PKG; also known as CGK1) and protein kinase C (PKC). Human Akt has three isoforms derived for distinct genes: Akt1/PKBalpha, Akt2/PKBbeta, and Akt3/PKBgamma. All Akts have an N-terminal PH domain with an activating Thr phosphorylation site, a kinase domain, and a short C-terminal regulatory tail with an activating Ser phosphorylation site. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. The phosphorylation of Akt at its Thr and Ser phosphorylation sites leads to increased Akt activity toward forkhead transcription factors, the mammalian target of rapamycin (mTOR), and the Bcl-xL/Bcl-2-associated death promoter (BAD), all of which possess a consensus motif R-X-R-XX-ST-B (X = amino acid, B = bulky hydrophobic residue) for Akt phosphorylation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 121

>gnl|CDD|241446 cd13292, PH_Osh1p_Osh2p_yeast, Yeast oxysterol binding protein homologs 1 and 2 Pleckstrin homology (PH) domain

 Score = 52.3 bits (126), Expect = 8e-10
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 27  PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE 86
           P   G+L K  +Y K ++ RWF+L+ G L +++  H    GS  RG I +     V    
Sbjct: 2   PTMKGYLKKWTNYAKGYKTRWFVLEDGVLSYYR--HQDDEGSACRGSINMKNARLVSDPS 59

Query: 87  DLLNKPFAFELS--TGEYTMYFV-ADTEKEKEEWINSIGRAI 125
           + L     FE+S  T     +++ A+   E   WI ++ +AI
Sbjct: 60  EKLR----FEVSSKTSGSPKWYLKANHPVEAARWIQALQKAI 97

Yeast Osh1p is proposed to function in postsynthetic sterol regulation, piecemeal microautophagy of the nucleus, and cell polarity establishment. Yeast Osh2p is proposed to function in sterol metabolism and cell polarity establishment. Both Osh1p and Osh2p contain 3 N-terminal ankyrin repeats, a PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. OSBP andOsh1p PH domains specifically localize to the Golgi apparatus in a PtdIns4P-dependent manner. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241288 cd01257, PH_IRS, Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

 Score = 52.3 bits (126), Expect = 9e-10
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 11/96 (11%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILK------QGKLFWFKDSHNITPGSTPRGVIPVGTCLTV 82
           +SG+L K     KT R+R+F+L+        +L ++++       + P+ VIP+ +C  +
Sbjct: 5   KSGYLKKL----KTMRKRYFVLRAESHGGPARLEYYENEKKFRRNAEPKRVIPLSSCFNI 60

Query: 83  RGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWI 118
               D  +K     L T +     VA++E+E++EW 
Sbjct: 61  NKRADAKHK-HLIALYTKDECFGLVAESEEEQDEWY 95

Insulin receptor substrate (IRS) molecules are mediators in insulin signaling and play a role in maintaining basic cellular functions such as growth and metabolism. They act as docking proteins between the insulin receptor and a complex network of intracellular signaling molecules containing Src homology 2 (SH2) domains. Four members (IRS-1, IRS-2, IRS-3, IRS-4) of this family have been identified that differ as to tissue distribution, subcellular localization, developmental expression, binding to the insulin receptor, and interaction with SH2 domain-containing proteins. IRS molecules have an N-terminal PH domain, followed by an IRS-like PTB domain which has a PH-like fold. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.cytoskeletal associated molecules, and in lipid associated enzymes. Length = 106

>gnl|CDD|241271 cd01238, PH_Btk, Bruton's tyrosine kinase pleckstrin homology (PH) domain

 Score = 51.5 bits (124), Expect = 3e-09
 Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 9/108 (8%)

Query: 29  RSGWLTK--QGDYI---KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR 83
           + G L K  QG        ++ RWF+L +  L +++           +G I +     V 
Sbjct: 1   KEGLLVKRSQGKKRFGPVNYKERWFVLTKSSLSYYEGDGG--KRGKEKGSIDLSKIKCVE 58

Query: 84  GAED--LLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHS 129
             +D     + + F++   +YT+Y  A +E++++EWI ++ +    +S
Sbjct: 59  EVKDDASFERKYPFQVVYDDYTLYVFAPSEEDRDEWILALRKECRNNS 106

Btk is a member of the Tec family of cytoplasmic protein tyrosine kinases that includes BMX, IL2-inducible T-cell kinase (Itk) and Tec. Btk plays a role in the maturation of B cells. Tec proteins general have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. The Btk PH domain binds phosphatidylinositol 3,4,5-trisphosphate and responds to signalling via phosphatidylinositol 3-kinase. The PH domain is also involved in membrane anchoring which is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain. This results in severe human immunodeficiency known as X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice.PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 140

>gnl|CDD|241438 cd13284, PH_OSBP_ORP4, Human Oxysterol binding protein and OSBP-related protein 4 Pleckstrin homology (PH) domain

 Score = 49.7 bits (119), Expect = 8e-09
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIP-VGTCLTVRGAED 87
             GWL K  +Y+K ++RRWF+L  G L ++++   +    T RG I   G  +     ED
Sbjct: 1   FKGWLLKWTNYLKGYQRRWFVLSNGLLSYYRNQAEMA--HTCRGTINLAGALIHT---ED 55

Query: 88  LLNKPFAFELSTG-EYTMYFVADTEKEKEEWINS 120
             N    F +S G   T +  A +E E++ W+ +
Sbjct: 56  SCN----FVISNGGTQTFHLKASSEVERQRWVTA 85

Human OSBP is proposed to function is sterol-dependent regulation of ERK dephosphorylation and sphingomyelin synthesis as well as modulation of insulin signaling and hepatic lipogenesis. It contains a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. OSBPs and Osh1p PH domains specifically localize to the Golgi apparatus in a PtdIns4P-dependent manner. ORP4 is proposed to function in Vimentin-dependent sterol transport and/or signaling. Human ORP4 has 2 forms, a long (ORP4L) and a short (ORP4S). ORP4L contains a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. ORP4S is truncated and contains only an OSBP-related domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 99

>gnl|CDD|241427 cd13273, PH_SWAP-70, Switch-associated protein-70 Pleckstrin homology (PH) domain

 Score = 49.6 bits (119), Expect = 9e-09
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 31  GWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLN 90
           G+L K+G  + TWR RWF+LK   L ++K           +G I + +   V    D   
Sbjct: 12  GYLWKKGHLLPTWRERWFVLKPNSLSYYKSED----LKEKKGEIALDSNCCVESLPDREG 67

Query: 91  KPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
           K   F + T + T    A   K ++EWI +I  AI + S+ 
Sbjct: 68  KKCRFCVKTPDKTYELSASDHKTRQEWIQAIQTAI-RLSQE 107

SWAP-70 (also called Differentially expressed in FDCP 6/DEF-6 or IRF4-binding protein) functions in cellular signal transduction pathways (in conjunction with Rac), regulates cell motility through actin rearrangement, and contributes to the transformation and invasion activity of mouse embryo fibroblasts. Metazoan SWAP-70 is found in B lymphocytes, mast cells, and in a variety of organs. Metazoan SWAP-70 contains an N-terminal EF-hand motif, a centrally located PH domain, and a C-terminal coiled-coil domain. The PH domain of Metazoan SWAP-70 contains a phosphoinositide-binding site and a nuclear localization signal (NLS), which localize SWAP-70 to the plasma membrane and nucleus, respectively. The NLS is a sequence of four Lys residues located at the N-terminus of the C-terminal a-helix; this is a unique characteristic of the Metazoan SWAP-70 PH domain. The SWAP-70 PH domain binds PtdIns(3,4,5)P3 and PtdIns(4,5)P2 embedded in lipid bilayer vesicles. There are additional plant SWAP70 proteins, but these are not included in this hierarchy. Rice SWAP70 (OsSWAP70) exhibits GEF activity toward the its Rho GTPase, OsRac1, and regulates chitin-induced production of reactive oxygen species and defense gene expression in rice. Arabidopsis SWAP70 (AtSWAP70) plays a role in both PAMP- and effector-triggered immunity. Plant SWAP70 contains both DH and PH domains, but their arrangement is the reverse of that in typical DH-PH-type Rho GEFs, wherein the DH domain is flanked by a C-terminal PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241268 cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 12/99 (12%)

Query: 31  GWLTKQGDYIKTWRRRWFILKQGK--LFWFKDSHNITPGSTPRGVIP------VGTCLTV 82
           G+L K+G  +K W++RWF+L   K  L +++   +    +  +GVI       V      
Sbjct: 7   GYLYKRGALLKGWKQRWFVLDLTKHQLRYYESKED----TKCKGVIDLQEVESVYPDTPS 62

Query: 83  RGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSI 121
            GA    +    FEL T +   YF+A + +  ++WI+ I
Sbjct: 63  IGAPKSPDPGAFFELKTNKRVYYFLAPSAEAAQQWIDVI 101

Sbf1 is a myotubularin-related pseudo-phosphatase. Both Sbf1 and myotubularin interact with the SET domains of Hrx and other epigenetic regulatory proteins, but Sbf1 lacks phosphatase activity due to several amino acid changes in its structurally preserved catalytic pocket. It contains pleckstrin (PH), GEF, and myotubularin homology domains that are thought to be responsible for signaling and growth control. Sbf1 functions as an inhibitor of cellular growth. The N-terminal GEF homology domain serves to inhibit the transforming effects of Sbf1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241429 cd13275, PH_M-RIP, Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain

 Score = 47.7 bits (114), Expect = 4e-08
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           + GWL KQ D    W++ WF+L+   L +++DS     G    GVI + TC  V   E  
Sbjct: 1   KKGWLMKQ-DEDGEWKKHWFVLRDASLRYYRDSVAEEAG-ELDGVIDLSTCTNV--TELP 56

Query: 89  LNKPFAFELSTGEYTMYFV-ADTEKEKEEWINSIGRAIVQ 127
           + + + F++ T +   Y + A T   +  WI +I +A   
Sbjct: 57  VQRNYGFQIKTWDGKRYVLSAMTSGIRRNWIQAIRKAAGL 96

M-RIP is proposed to play a role in myosin phosphatase regulation by RhoA. M-RIP contains 2 PH domains followed by a Rho binding domain (Rho-BD), and a C-terminal myosin binding subunit (MBS) binding domain (MBS-BD). The amino terminus of M-RIP with its adjacent PH domains and polyproline motifs mediates binding to both actin and Galpha. M-RIP brings RhoA and MBS into close proximity where M-RIP can target RhoA to the myosin phosphatase complex to regulate the myosin phosphorylation state. M-RIP does this via its C-terminal coiled-coil domain which interacts with the MBS leucine zipper domain of myosin phosphatase, while its Rho-BD, directly binds RhoA in a nucleotide-independent manner. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241407 cd13253, PH1_ARAP, ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 1

 Score = 47.3 bits (113), Expect = 5e-08
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 28  ERSGWLTK---QGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
            +SGWL K   QG+Y+  +++RW +     L +F     +      +G+IP+ +  TVR 
Sbjct: 1   TKSGWLDKLSPQGNYV--FQKRWVVFDGDSLRYFNSEKEMYS----KGIIPLSSIKTVRS 54

Query: 85  AEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
             D  NK   FE+ TG  T  F A++E E+  W++++  AI
Sbjct: 55  VGD--NK---FEVVTGNRTFVFRAESEDERNLWVSTLMAAI 90

ARAP proteins (also called centaurin delta) are phosphatidylinositol 3,4,5-trisphosphate-dependent GTPase-activating proteins that modulate actin cytoskeleton remodeling by regulating ARF and RHO family members. They bind phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) and phosphatidylinositol 3,4-bisphosphate (PtdIns(3,4,5)P2) binding. There are 3 mammalian ARAP proteins: ARAP1, ARAP2, and ARAP3. All ARAP proteins contain a N-terminal SAM (sterile alpha motif) domain, 5 PH domains, an ArfGAP domain, 2 ankyrin domain, A RhoGap domain, and a Ras-associating domain. This hierarchy contains the first PH domain in ARAP. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 93

>gnl|CDD|241447 cd13293, PH_CpORP2-like, Cryptosporidium-like Oxysterol binding protein related protein 2 Pleckstrin homology (PH) domain

 Score = 47.3 bits (113), Expect = 5e-08
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 31  GWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLN 90
           G+L K  +   +W+ R+FIL  G L + K       G   +G I +  C      +D   
Sbjct: 3   GYLKKWTNIFNSWKPRYFILYPGILCYSKQ-----KGGPKKGTIHLKICDIRLVPDD--- 54

Query: 91  KPFAFELSTGEYTMYFVADTEKEKEEWINSIGRA 124
            P    ++TG   ++  A + +EK +W N++  A
Sbjct: 55  -PLRIIINTGTNQLHLRASSVEEKLKWYNALKYA 87

There are 2 types of ORPs found in Cryptosporidium: CpORP1 and CpORP2. Cryptosporium differs from other apicomplexans like Plasmodium, Toxoplasma, and Eimeria which possess only a single long-type ORP consisting of an N-terminal PH domain followed by a C-terminal ligand binding (LB) domain. CpORP2 is like this, but CpORP1 differs and has a truncated N-terminus resulting in only having a LB domain present. The exact functions of these proteins are largely unknown though CpORP1 is thought to be involved in lipid transport across the parasitophorous vacuole membrane. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 88

>gnl|CDD|241296 cd01265, PH_TBC1D2A, TBC1 domain family member 2A pleckstrin homology (PH) domain

 Score = 47.3 bits (113), Expect = 5e-08
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 13/96 (13%)

Query: 30  SGWLTK--QGDYIKTWRRRWFILKQGK--LFWFKDSHNITPGSTPRGVIPV-GTCLTVRG 84
            G+L K      +KTW+ RWF+  + K  L++++   +I    TP G I + G   +   
Sbjct: 3   CGYLNKLETKGLLKTWKSRWFVFDERKCQLYYYRSPQDI----TPLGSIDLSGAAFSY-- 56

Query: 85  AEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINS 120
             D   +   FE+ T        A   +    W+  
Sbjct: 57  --DPEAEKGTFEIHTPGRVYILKASDRQAMLYWLQE 90

TBC1D2A (also called PARIS-1/Prostate antigen recognized and identified by SEREX 1 and ARMUS) contains a PH domain and a TBC-type GTPase catalytic domain. TBC1D2A integrates signaling between Arf6, Rac1, and Rab7 during junction disassembly. Activated Rac1 recruits TBC1D2A to locally inactivate Rab7 via its C-terminal TBC/RabGAP domain and facilitate E-cadherin degradation in lysosomes. The TBC1D2A PH domain mediates localization at cell-cell contacts and coprecipitates with cadherin complexes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 101

>gnl|CDD|241297 cd01266, PH_Gab1_Gab2, Grb2-associated binding proteins 1 and 2 pleckstrin homology (PH) domain

 Score = 48.0 bits (114), Expect = 6e-08
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 19/107 (17%)

Query: 30  SGWLTKQGDYIK----TWRRRWFILKQGKLF-------WFKDSHNITPGSTPRGVIPVGT 78
           SGWL K     K     W++RWF+L+ G+L        ++K+ H       P  VI +  
Sbjct: 7   SGWLRKSPPEKKLRRYAWKKRWFVLRSGRLSGDPDVLEYYKNDH----AKKPIRVIDLNL 62

Query: 79  CLTVRGA----EDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSI 121
           C  V       +  L   + F++ T +   Y VA+TE++  +W+ +I
Sbjct: 63  CEQVDAGLTFNKKELENSYIFDIKTIDRIFYLVAETEEDMNKWVRNI 109

The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. The members in this cd include the Gab1 and Gab2 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 123

>gnl|CDD|241535 cd13384, PH_Gab2_2, Grb2-associated binding protein family pleckstrin homology (PH) domain

 Score = 47.8 bits (114), Expect = 6e-08
 Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 19/111 (17%)

Query: 29  RSGWLTKQGDYIK----TWRRRWFILKQGK------LFWFKDSHNITPGSTPRGVIPVGT 78
             GWLTK     +     WRRR+F+L+Q +      L ++ D          +G I +  
Sbjct: 5   YEGWLTKSPPEKRIWRAKWRRRYFVLRQSEIPGQYFLEYYTDRTC----RKLKGSIDLDQ 60

Query: 79  CLTVRGAEDLLNK-----PFAFELSTGEYTMYFVADTEKEKEEWINSIGRA 124
           C  V        K        F++ T + T Y VADTE E  +W+N I   
Sbjct: 61  CEQVDAGLTFETKNKLKDQHIFDIRTPKRTYYLVADTEDEMNKWVNCICTV 111

The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. Members here include insect, nematodes, and crustacean Gab2s. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 115

>gnl|CDD|241529 cd13378, PH_RhoGAP2, Rho GTPase activating protein 2 Pleckstrin homology (PH) domain

 Score = 47.6 bits (113), Expect = 6e-08
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 28/115 (24%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE-- 86
           ++GWL KQ   +K W++RWF+L+  +LF++KD     P            C++++G++  
Sbjct: 5   KAGWLKKQRSIMKNWQQRWFVLRGDQLFYYKDEEETKPQG----------CISLQGSQVN 54

Query: 87  DLLNKP-----FAFELSTG-----------EYTMYFVADTEKEKEEWINSIGRAI 125
           +L   P       FE+  G                 +A+++ + E+W+ +I R I
Sbjct: 55  ELPPNPEEPGKHLFEILPGGAGDREKVPMNHEAFLLMANSQSDMEDWVKAIRRVI 109

RhoGAP2 (also called RhoGap22 or ArhGap22) are involved in cell polarity, cell morphology and cytoskeletal organization. They activate a GTPase belonging to the RAS superfamily of small GTP-binding proteins. The encoded protein is insulin-responsive, is dependent on the kinase Akt, and requires the Akt-dependent 14-3-3 binding protein which binds sequentially to two serine residues resulting in regulation of cell motility. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 116

>gnl|CDD|241470 cd13316, PH_Boi, Boi family Pleckstrin homology domain

 Score = 47.0 bits (112), Expect = 7e-08
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 30  SGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLL 89
           SGW+ K+G+   TW+ R+F+LK  +L++ K  ++    S  +G+I +          +  
Sbjct: 2   SGWMKKRGERYGTWKTRYFVLKGTRLYYLKSEND----SKEKGLIDLTGHRVTVDDSNSK 57

Query: 90  NKPFAFEL--STGEYTMYFVADTEKEKEEWINSIGRA 124
              + F+L     E   YF  D ++   EW+ ++ +A
Sbjct: 58  PGRYGFKLVPPAVEKVHYFAVDEKEVLREWMKALMKA 94

Yeast Boi proteins Boi1 and Boi2 are functionally redundant and important for cell growth with Boi mutants displaying defects in bud formation and in the maintenance of cell polarity.They appear to be linked to Rho-type GTPase, Cdc42 and Rho3. Boi1 and Boi2 display two-hybrid interactions with the GTP-bound ("active") form of Cdc42, while Rho3 can suppress of the lethality caused by deletion of Boi1 and Boi2. These findings suggest that Boi1 and Boi2 are targets of Cdc42 that promote cell growth in a manner that is regulated by Rho3. Boi proteins contain a N-terminal SH3 domain, followed by a SAM (sterile alpha motif) domain, a proline-rich region, which mediates binding to the second SH3 domain of Bem1, and C-terminal PH domain. The PH domain is essential for its function in cell growth and is important for localization to the bud, while the SH3 domain is needed for localization to the neck. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 95

>gnl|CDD|241536 cd13385, PH_Gab3, Grb2-associated binding protein 3 pleckstrin homology (PH) domain

 Score = 47.6 bits (113), Expect = 7e-08
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 20/110 (18%)

Query: 30  SGWLTKQGDYIK----TWRRRWFILKQGK-------LFWFKDSHNITPGSTPRGVIPVGT 78
           +GWL K     K     WR+RWF+L++G+       L ++++ H+      P  VI +  
Sbjct: 9   TGWLIKSPPEKKLKRYAWRKRWFVLRRGRMSGNPDVLEYYRNKHS----KKPIRVIDLNE 64

Query: 79  CLTVRGAEDLLNKP-----FAFELSTGEYTMYFVADTEKEKEEWINSIGR 123
           C   + A     K      F F + T   T Y VA TE+E ++W+ +I +
Sbjct: 65  CEVTKHAGVNFIKKEFQNNFVFIVKTTTRTFYLVAKTEEEMQDWVQNISQ 114

The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. The members in this cd include the Gab1, Gab2, and Gab3 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|241388 cd13234, PHsplit_PLC_gamma, Phospholipase C-gamma Split pleckstrin homology (PH) domain

 Score = 47.0 bits (112), Expect = 7e-08
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 41  KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELST- 99
             W   +F+L   K+++ +++ N   GS  RG++ V +C  V   E   ++PF F LS  
Sbjct: 15  HEWTPHYFVLTSNKIYYSEETENSPLGSLLRGILDVPSCHVVIRPEGKNSRPFVFILSPK 74

Query: 100 --GEYTMYFVADTEKEKEEWINSIGRAIVQ 127
              + ++   ADT++E  +W+  I R I Q
Sbjct: 75  QLSDPSLDVAADTQEELFDWVQKI-REITQ 103

PLC-gamma (PLCgamma) is activated by receptor and non-receptor tyrosine kinases due to the presence of its SH2 and SH3 domains. There are two main isoforms of PLC-gamma expressed in human specimens, PLC-gamma1 and PLC-gamma2. PLC-gamma consists of an N-terminal PH domain, a EF hand domain, a catalytic domain split into X and Y halves internal to which is a PH domain split by two SH2 domains and a single SH3 domain, and a C-terminal C2 domain. The split PH domain is present in this hierarchy. PLCs (EC 3.1.4.3) play a role in the initiation of cellular activation, proliferation, differentiation and apoptosis. They are central to inositol lipid signalling pathways, facilitating intracellular Ca2+ release and protein kinase C (PKC) activation. Specificaly, PLCs catalyze the cleavage of phosphatidylinositol-4,5-bisphosphate (PIP2) and result in the release of 1,2-diacylglycerol (DAG) and inositol 1,4,5-triphosphate (IP3). These products trigger the activation of protein kinase C (PKC) and the release of Ca2+ from intracellular stores. There are fourteen kinds of mammalian phospholipase C proteins which are are classified into six isotypes (beta, gamma, delta, epsilon, zeta, eta). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|241426 cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bisphosphate 4-phosphatase and Type II inositol 3,4-bisphosphate 4-phosphatase Pleckstrin homology (PH) domain

 Score = 47.2 bits (113), Expect = 8e-08
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 44  RRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELS-TGEY 102
           + RWF L+   LF+FK +    PGS P GVI +  C   R  E+     FAF L    E 
Sbjct: 16  KERWFKLRGNLLFYFKSNE---PGSEPAGVIVLENCRVQR--EEPDPGGFAFSLVFKDEK 70

Query: 103 TMYFVADTEKEKEEWINSIGRA 124
              F   +E+E++EWI +I +A
Sbjct: 71  KYRFSCRSEEERDEWIEAIKQA 92

INPP4A (also called Inositol polyphosphate 4-phosphatase type I) and INPP4B (also called Inositol polyphosphate 4-phosphatase type II) both catalyze the hydrolysis of the 4-position phosphate of phosphatidylinositol 3,4-bisphosphate and inositol 1,3,4-trisphosphate. They differ in that INPP4A additionally catalyzes the hydrolysis of the 4-position phosphate of inositol 3,4-bisphosphate, while INPP4B catalyzes the hydrolysis of the 4-position phosphate of inositol 1,4-bisphosphate. They both have a single PH domain followed by a C2 domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 116

>gnl|CDD|241291 cd01260, PH_CNK_mammalian-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 47.0 bits (112), Expect = 9e-08
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 11/108 (10%)

Query: 26  NPERSGWLTKQGD----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLT 81
             +  GWL K+ +    + + W+R WF+LK   L+W+ +  +        G I +     
Sbjct: 12  RGDCDGWLWKKKEAKGFFGQKWKRYWFVLKGSSLYWYNNPQD----EKAEGFINLPDFKI 67

Query: 82  VRGAEDLLNKPFAFELSTGEY-TMYFVADTEKEKEEWINSIGRAIVQH 128
            R +E    K +AF+ S  +  T YF A+   +  +W++ +  AI ++
Sbjct: 68  ERASEC--KKKYAFKASHPKIKTFYFAAENLDDMNKWLSKLITAINKY 113

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and, with the exception of CNK3, a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from mammals, chickens, amphibians, fish, and crustacea. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241414 cd13260, PH_RASA1, RAS p21 protein activator (GTPase activating protein) 1 Pleckstrin homology (PH) domain

 Score = 46.5 bits (111), Expect = 1e-07
 Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 12/102 (11%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGK--LFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE 86
           + G+L K+    K W+  +F+L+  +  L++F ++   T    P+G+I +    +V    
Sbjct: 5   KKGYLLKKSGKNKKWKNLYFVLEGAEQHLYFF-ENEKRT---KPKGLIDLSYS-SVYPVH 59

Query: 87  D-LLNKPFAFEL---STGEYTM-YFVADTEKEKEEWINSIGR 123
           D L  +P  F++   +  E T+ Y  ADT +  ++W+ ++  
Sbjct: 60  DSLFGRPNCFQIVVRALNESTIYYLCADTAELAQDWMKALRA 101

RASA1 (also called RasGap1 or p120) is a member of the RasGAP family of GTPase-activating proteins. RASA1 contains N-terminal SH2-SH3-SH2 domains, followed by two C2 domains, a PH domain, a RasGAP domain, and a BTK domain. Splice variants lack the N-terminal domains. It is a cytosolic vertebrate protein that acts as a suppressor of RAS via its C-terminal GAP domain function, enhancing the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, allowing control of cellular proliferation and differentiation. Additionally, it is involved in mitogenic signal transmission towards downstream interacting partners through its N-terminal SH2-SH3-SH2 domains. RASA1 interacts with a number of proteins including: G3BP1, SOCS3, ANXA6, Huntingtin, KHDRBS1, Src, EPHB3, EPH receptor B2, Insulin-like growth factor 1 receptor, PTK2B, DOK1, PDGFRB, HCK, Caveolin 2, DNAJA3, HRAS, GNB2L1 and NCK1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241478 cd13324, PH_Gab-like, Grb2-associated binding protein family Pleckstrin homology (PH) domain

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 19/107 (17%)

Query: 29  RSGWLTKQGDYIKT----WRRRWFILKQGKLF-------WFKDSHNITPGSTPRGVIPVG 77
             GWL K     K     W++RWF+L+ G+L        ++KD H       P G I + 
Sbjct: 1   YEGWLRKSPPEKKIKRAAWKKRWFVLRSGRLSGDPDVLEYYKDDHC----KKPIGAIDLD 56

Query: 78  TCLTVRGAEDLLNKP----FAFELSTGEYTMYFVADTEKEKEEWINS 120
            C  V        K     F F++ T + T Y VA+TE+E  +W+  
Sbjct: 57  ECEQVDAGLTFEYKEFKNQFIFDIVTPKRTYYLVAETEEEMNKWVRC 103

Gab proteins are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. There are 3 families: Gab1, Gab2, and Gab3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241437 cd13283, PH_GPBP, Goodpasture antigen binding protein Pleckstrin homology (PH) domain

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 12/96 (12%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
             G L+K  +YI  W+ R+F+LK G L ++K       G   RG I      ++R A  +
Sbjct: 1   LRGVLSKWTNYIHGWQDRYFVLKDGTLSYYKSEDETQYGC--RGSI------SLRKAV-I 51

Query: 89  LNKPF---AFELSTGEYTMYFVADTEKEKEEWINSI 121
               F    F++S  +   Y  A++ +E++ W++++
Sbjct: 52  KPHEFDECRFDVSVNDSVWYLRAESPEERQRWVDAL 87

The GPBP (also called Collagen type IV alpha-3-binding protein/hCERT; START domain-containing protein 11/StARD11; StAR-related lipid transfer protein 11) is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen, which is commonly known as the goodpasture antigen. Its splice variant the ceramide transporter (CERT) mediates the cytosolic transport of ceramide. There have been additional splice variants identified, but all of them function as ceramide transport proteins. GPBP and CERT both contain an N-terminal PH domain, followed by a serine rich domain, and a C-terminal START domain. However, GPBP has an additional serine rich domain just upstream of its START domain. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 100

>gnl|CDD|241266 cd01233, PH_KIFIA_KIFIB, KIFIA and KIFIB protein pleckstrin homology (PH) domain

 Score = 44.9 bits (107), Expect = 7e-07
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 26  NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
              + G+L    D    W RRW +L++  L      ++       RGVI + T   V  +
Sbjct: 13  VVSKKGYLLFLEDATDGWVRRWVVLRRPYLH----IYSSEKDGDERGVINLSTA-RVEYS 67

Query: 86  ED---LLNKPFAFELSTGEYTMYFVADTEKEKEEWINSI 121
            D   LL +P  F + T   +    A +EKE  +W+ +I
Sbjct: 68  PDQEALLGRPNVFAVYTPTNSYLLQARSEKEMHDWLYAI 106

The kinesin-3 family motors KIFIA (Caenorhabditis elegans homolog unc-104) and KIFIB transport synaptic vesicle precursors that contain synaptic vesicle proteins, such as synaptophysin, synaptotagmin and the small GTPase RAB3A, but they do not transport organelles that contain plasma membrane proteins. They have a N-terminal motor domain, followed by a coiled-coil domain, and a C-terminal PH domain. KIF1A adopts a monomeric form in vitro, but acts as a processive dimer in vivo. KIF1B has alternatively spliced isoforms distinguished by the presence or absence of insertion sequences in the conserved amino-terminal region of the protein; this results in their different motor activities. KIF1A and KIF1B bind to RAB3 proteins through the adaptor protein mitogen-activated protein kinase (MAPK) -activating death domain (MADD; also calledDENN), which was first identified as a RAB3 guanine nucleotide exchange factor (GEF). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241480 cd13326, PH_CNK_insect-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 31  GWLT---KQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED 87
           GWL    ++G     W +RWF+LK   L+ F+   +    +    VI +    TV  A +
Sbjct: 3   GWLYQRRRKGKGGGKWAKRWFVLKGSNLYGFRSQES----TKADCVIFL-PGFTVSPAPE 57

Query: 88  LLNKPFAFELSTGEYTMYFVADTEKEKEEWINS 120
           + ++ +AF++       YF A+++++ ++W++ 
Sbjct: 58  VKSRKYAFKVYHTGTVFYFAAESQEDMKKWLDL 90

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from insects, spiders, mollusks, and nematodes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|241421 cd13267, PH_DOCK-D, Dedicator of cytokinesis-D subfamily Pleckstrin homology (PH) domain

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 25/125 (20%)

Query: 29  RSGWLTKQGDYI---------KTWRRRWFILKQGK-----LFWFKDSHNITPGST-PRGV 73
           + G+L K G            K+++RR+F LKQ       L ++KD       S   +G 
Sbjct: 8   KEGYLYK-GPENSSMFISLAMKSFKRRFFHLKQLVDGSYILEFYKDE-----KSKEAKGT 61

Query: 74  IPVGTCLTVRGAEDLLNKPFAFELS-TGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSV 132
           I + +C  V        K F FEL      +    A++E E ++WI+ +   I+Q ++  
Sbjct: 62  IYLDSCTGVV-QNSKRRK-FCFELRMQDGKSYVLAAESESEMDDWISKL-NKILQINKEQ 118

Query: 133 TESEV 137
            E   
Sbjct: 119 EEQRK 123

DOCK-D subfamily (also called Zizimin subfamily) consists of Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2. DOCK-D has a N-terminal DUF3398 domain, a PH-like domain, a Dock Homology Region 1, DHR1 (also called CZH1), a C2 domain, and a C-terminal DHR2 domain (also called CZH2). Zizimin1 is enriched in the brain, lung, and kidney; zizimin2 is found in B and T lymphocytes, and zizimin3 is enriched in brain, lung, spleen and thymus. Zizimin1 functions in autoinhibition and membrane targeting. Zizimin2 is an immune-related and age-regulated guanine nucleotide exchange factor, which facilitates filopodial formation through activation of Cdc42, which results in activation of cell migration. No function has been determined for Zizimin3 to date. The N-terminal half of zizimin1 binds to the GEF domain through three distinct areas, including CZH1, to inhibit the interaction with Cdc42. In addition its PH domain binds phosphoinositides and mediates zizimin1 membrane targeting. DOCK is a family of proteins involved in intracellular signalling networks. They act as guanine nucleotide exchange factors for small G proteins of the Rho family, such as Rac and Cdc42. There are 4 subfamilies of DOCK family proteins based on their sequence homology: A-D. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|241456 cd13302, PH2_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH) domain, repeat 2

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 22  EFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITP--GSTPRGVIPVGTC 79
           EF     + G L KQG   K W+ R F+L+    +     H   P  G  P G I +  C
Sbjct: 2   EFRGIIVKQGCLLKQGHRRKNWKVRKFVLRDDPAYL----HYYDPAKGEDPLGAIHLRGC 57

Query: 80  LTVRGAEDLLNKPFA------FELSTGEYTMYFV-ADTEKEKEEWINSIGRA 124
           + V   ED  N          FE+ T +   Y++ A T  E+ EWI +I  A
Sbjct: 58  V-VTAVEDNSNPAKGSVEGNLFEIITADEVHYYLQAATPAERTEWIKAIQMA 108

Pleckstrin is a protein found in platelets. This name is derived from platelet and leukocyte C kinase substrate and the KSTR string of amino acids. Pleckstrin 2 contains two PH domains and a DEP (dishvelled, egl-10, and pleckstrin) domain. Unlike pleckstrin 1, pleckstrin 2 does not contain obvious sites of PKC phosphorylation. Pleckstrin 2 plays a role in actin rearrangement, large lamellipodia and peripheral ruffle formation, and may help orchestrate cytoskeletal arrangement. The PH domains of pleckstrin 2 are thought to contribute to lamellipodia formation. This cd contains the second PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 109

>gnl|CDD|241463 cd13309, PH_SKIP, SifA and kinesin-interacting protein Pleckstrin homology (PH) domain

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 42  TWRRRWFILKQGKLFWFKDSHNITPG-STPRGVIPVGTCLTVRGAEDLLNKPFAFELS-T 99
           TW+  +F+LK G L+ + D  +  P  S   G    G C  +   +    +P +FEL  T
Sbjct: 19  TWKPGYFLLKNGVLYQYPDRSDRLPLLSISLGGEQCGGCRRINNTD----RPHSFELILT 74

Query: 100 GEYTMYFVADTEKEKEEWINSI 121
              ++   A  E E  EW+ S+
Sbjct: 75  DRPSLELAAPDEYEASEWLQSL 96

SKIP (also called PLEKHM2/Pleckstrin homology domain-containing family M member 2) is a soluble cytosolic protein that contains a RUN domain and a PH domain separated by a unstructured linker region. SKIP is a target of the Salmonella effector protein SifA and the SifA-SKIP complex regulates kinesin-1 on the bacterial vacuole. The PH domain of SKIP binds to the N-terminal region of SifA while the N-terminus of SKIP is proposed to bind the TPR domain of the kinesin light chain. The opposite side of the SKIP PH domain is proposed to bind phosphoinositides. TSifA, SKIP, SseJ, and RhoA family GTPases are also thought to promote host membrane tubulation. Recently, it was shown that the lysosomal GTPase Arl8 binds to the kinesin-1 linker SKIP and that both are required for the normal intracellular distribution of lysosomes. Interestingly, two kinesin light chain binding motifs (WD) in SKIP have now been identified to match a consensus sequence for a kinesin light chain binding site found in several proteins including calsyntenin-1/alcadein, caytaxin, and vaccinia virus A36. SKIP has also been shown to interact with Rab1A. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241269 cd01236, PH_RIP, Rho-Interacting Protein Pleckstrin homology (PH) domain

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 41  KTWRRRWFIL-KQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELST 99
           K W+RRWF+L   G+L +  D +   P + P+G I +  C  V  AE +   P +  ++T
Sbjct: 52  KRWQRRWFVLYDDGELRYALDEN---PDTLPQGSIDMSKCTEVTDAEAITGHPHSLAITT 108

Query: 100 GEYTMYFVADTEKEKEEWIN 119
            E   +  AD++++   W+ 
Sbjct: 109 PERIHFIKADSKEDIRWWLE 128

RIP1-RhoGDI2 was obtained in a screen for proteins that bind to wild-type RhoA. RIP2, RIP3, and RIP4 were isolated from cDNA libraries with constitutively active V14RhoA (containing the C190R mutation). RIP2 represents a novel GDP/GTP exchange factor (RhoGEF), while RIP3 (p116Rip) and RIP4 are thought to be structural proteins. RhoGEF contains a Dbl(DH)/PH region, a a zinc finger motif, a leucine-rich domain, and a coiled-coil region. The last 2 domains are thought to be involved in mediating protein-protein interactions. RIP3 is a negative regulator of RhoA signaling that inhibits, either directly or indirectly, RhoA-stimulated actomyosin contractility. In plants RIP3 is localized at microtubules and interacts with the kinesin-13 family member AtKinesin-13A, suggesting a role for RIP3 in microtubule reorganization and a possible function in Rho proteins of plants (ROP)-regulated polar growth. It has a PH domain, two proline-rich regions which are putative binding sites for SH3 domains, and a COOH-terminal coiled-coil region which overlaps with the RhoA-binding region. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 136

>gnl|CDD|241405 cd13251, PH_ASAP, ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 15/103 (14%)

Query: 28  ERSGWLTKQGDYI--KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
           E+SG+L K+ +    K W++R   ++ G L       N  P       + + TC      
Sbjct: 11  EKSGYLLKKSEGKLRKVWQKRRCSIRNGFLTISHSDENKPPVK-----LNLLTCQVKPNP 65

Query: 86  EDLLNKPFAFELSTGEYTMYFVADTEKEKEEWI----NSIGRA 124
           ED       F+L +   T +F A+ E+E E WI    NS   A
Sbjct: 66  ED----KKCFDLISHNRTYHFQAEDEQEAEAWISVLQNSKEEA 104

ASAPs (ASAP1, ASAP2, and ASAP3) function as an Arf-specific GAPs, participates in rhodopsin trafficking, is associated with tumor cell metastasis, modulates phagocytosis, promotes cell proliferation, facilitates vesicle budding, Golgi exocytosis, and regulates vesicle coat assembly via a Bin/Amphiphysin/Rvs domain. ASAPs contain an NH2-terminal BAR domain, a tandem PH domain/GAP domain, three ankyrin repeats, two proline-rich regions, and a COOH-terminal Src homology 3 (SH3) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241285 cd01254, PH_PLD, Phospholipase D pleckstrin homology (PH) domain

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 25  SNPERSGWLTK-----QGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTC 79
           S   R GW               W +RWFI+K   L +  D  +         V      
Sbjct: 34  SGGHRQGWRVCHFCCCCKSMCSRWSKRWFIVKDSFLAYVDDPDS----GKILDVFLFDKE 89

Query: 80  LTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSI 121
             V   +         +++    T+     + ++ +EW+ SI
Sbjct: 90  FKVSRGKKETGSRHGLKITNLSRTLKIKCKSYRKAKEWVESI 131

PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 134

>gnl|CDD|241278 cd01247, PH_FAPP1_FAPP2, Four phosphate adaptor protein 1 and 2 Pleckstrin homology (PH) domain

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)

Query: 31  GWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLN 90
           G L K  +Y+  W+ RWF+L  G L ++K    +  G   +G I +  C  +    D   
Sbjct: 3   GVLYKWTNYLSGWQPRWFVLDDGVLSYYKSQEEVDQGC--KGSIKMSVCEIIVHPTD--- 57

Query: 91  KPFAFELST-GEYTMYFVADTEKEKEEWINSIGRA 124
                +L   GE   Y  A +  E++ W+ ++G A
Sbjct: 58  -NTRMDLIIPGEQHFYLKASSAAERQRWLVALGSA 91

Human FAPP1 (also called PLEKHA3/Pleckstrin homology domain-containing, family A member 3) regulates secretory transport from the trans-Golgi network to the plasma membrane. It is recruited through binding of PH domain to phosphatidylinositol 4-phosphate (PtdIns(4)P) and a small GTPase ADP-ribosylation factor 1 (ARF1). These two binding sites have little overlap the FAPP1 PH domain to associate with both ligands simultaneously and independently. FAPP1 has a N-terminal PH domain followed by a short proline-rich region. FAPP1 is a member of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), and Goodpasture antigen binding protein (GPBP). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. FAPP2 (also called PLEKHA8/Pleckstrin homology domain-containing, family A member 8), a member of the Glycolipid lipid transfer protein(GLTP) family has an N-terminal PH domain that targets the TGN and C-terminal GLTP domain. FAPP2 functions to traffic glucosylceramide (GlcCer) which is made in the Golgi. It's interaction with vesicle-associated membrane protein-associated protein (VAP) could be a means of regulation. Some FAPP2s share the FFAT-like motifs found in GLTP. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 100

>gnl|CDD|241294 cd01263, PH_anillin, Anillin Pleckstrin homology (PH) domain

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 15/99 (15%)

Query: 43  WRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLT---VRGAEDLLNKPFAFELST 99
           W RRW +L+ G L ++K   +      P G I +  C+       + +L  +P  FEL T
Sbjct: 20  WHRRWCVLRGGYLSFWKYPEDEEKK-KPIGSIDLRKCINEKVEPASRELCARPNTFELET 78

Query: 100 -----------GEYTMYFVADTEKEKEEWINSIGRAIVQ 127
                       +  +   ADT++E+ EW++++ + +  
Sbjct: 79  LRPAEDSDGTNEKKRVLLSADTKEERIEWLDALNQTLAD 117

Anillin (Rhotekin/RTKN; also called PLEKHK/Pleckstrin homology domain-containing family K) is an actin binding protein involved in cytokinesis. It interacts with GTP-bound Rho proteins and results in the inhibition of their GTPase activity. Dysregulation of the Rho signal transduction pathway has been implicated in many forms of cancer. Anillin proteins have a N-terminal HRI domain/ACC (anti-parallel coiled-coil) finger domain or Rho-binding domain binds small GTPases from the Rho family. The C-terminal PH domain helps target anillin to ectopic septin containing foci. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 119

>gnl|CDD|241424 cd13270, PH1_TAPP1_2, Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, N-terminal repeat

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 41  KTWRRRWFIL--KQGKLFWFKDSHNITP-GSTPRGVIPVGTCLTVRGAEDLLNK-PFAFE 96
             + RR+FIL    G L W+ D+    P G+ P G + +     V  A     K  F F 
Sbjct: 23  GKFLRRYFILDTAAGLLLWYMDNPQNLPDGAAPVGSLNLTYISKVSDAPKQKPKAEFCFV 82

Query: 97  LSTGEYTMYFVADTEKEKEEWINSIGRA 124
           ++      +  A+ +++ EEW+ ++  A
Sbjct: 83  INALSRRYFLQANDQQDLEEWVEALNDA 110

The binding of TAPP1 (also called PLEKHA1/pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1) and TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP1 and TAPP2 contain two sequential PH domains in which the C-terminal PH domain binds PtdIns(3,4)P2. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 118

>gnl|CDD|241392 cd13238, PH2_FGD4_insect-like, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia protein 4 pleckstrin homology (PH) domain, C-terminus, in insect and related arthropods

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 30  SGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVG----TCLTVRGA 85
           SG+L  + +  KTW RRWF L    + +   S             PV     T      A
Sbjct: 2   SGYLKLKTNGRKTWIRRWFALHPDFVLYSYKSEE---DKLALTATPVPGFLVTLGEKGSA 58

Query: 86  EDLLN---KPFAFELSTGEYTMYFVADTEKEKEEWI 118
           ED LN   +  AF++   + + YF A+   EK++W+
Sbjct: 59  EDPLNDKDRIRAFKMFHVKKSYYFQANDGDEKDKWV 94

In general, FGDs have a RhoGEF (DH) domain, followed by an N-terminal PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activates the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the N-terminal PH domain is involved in intracellular targeting of the DH domain. FGD4 is one of the genes associated with Charcot-Marie-Tooth neuropathy type 4 (CMT4), a group of progressive motor and sensory axonal and demyelinating neuropathies that are distinguished from other forms of CMT by autosomal recessive inheritance. Those affected have distal muscle weakness and atrophy associated with sensory loss and, frequently, pes cavus foot deformity. This cd contains insects, crustaceans, and chelicerates. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241419 cd13265, PH_evt, Evectin Pleckstrin homology (PH) domain

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 29 RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKD 60
          +SGWL +Q   +K W++ WF+L   G+L +++D
Sbjct: 5  KSGWLLRQSTILKRWKKNWFVLYSDGELSYYED 37

There are 2 members of the evectin family (also called pleckstrin homology domain containing, family B): evt-1 (also called PLEKHB1) and evt-2 (also called PLEKHB2). evt-1 is specific to the nervous system, where it is expressed in photoreceptors and myelinating glia. evt-2 is widely expressed in both neural and nonneural tissues. Evectins possess a single N-terminal PH domain and a C-terminal hydrophobic region. evt-1 is thought to function as a mediator of post-Golgi trafficking in cells that produce large membrane-rich organelles. It is a candidate gene for the inherited human retinopathy autosomal dominant familial exudative vitreoretinopathy and a susceptibility gene for multiple sclerosis. evt-2 is essential for retrograde endosomal membrane transport from the plasma membrane (PM) to the Golgi. Two membrane trafficking pathways pass through recycling endosomes: a recycling pathway and a retrograde pathway that links the PM to the Golgi/ER. Its PH domain that is unique in that it specifically recognizes phosphatidylserine (PS), but not polyphosphoinositides. PS is an anionic phospholipid class in eukaryotic biomembranes, is highly enriched in the PM, and plays key roles in various physiological processes such as the coagulation cascade, recruitment and activation of signaling molecules, and clearance of apoptotic cells. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241412 cd13258, PH_PLEKHJ1, Pleckstrin homology domain containing, family J member 1 Pleckstrin homology (PH) domain

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 11/112 (9%)

Query: 27  PERSGWL----TKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTV 82
            E  G L     K+G  +K  R  W  L    LF+FK    +     P G + +  C  V
Sbjct: 16  AEMEGELLMRGPKKGSVLK-KRLFWVRLVVNFLFYFKTD-EMFDELEPIGALLLERCRVV 73

Query: 83  RGAEDLLNKPFAFELS---TGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
           +  E+   K F F +S     E   YF   +E++  EW+ ++ +A  +  R 
Sbjct: 74  Q--EEPPAKSFVFSISFIDEPERKYYFECRSEEQCVEWVEALRQASYEFMRR 123

PLEKHJ1 (also called GNRPX2/Guanine nucleotide-releasing protein x ). It contains a single PH domain. Very little information is known about PLEKHJ1. PLEKHJ1 has been shown to interact with IKBKG (inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma) and KRT33B (keratin 33B). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 144

>gnl|CDD|241451 cd13297, PH3_MyoX-like, Myosin X-like Pleckstrin homology (PH) domain, repeat 3

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 20/107 (18%)

Query: 30  SGWLTK--QGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED 87
            GWL K        T ++RWF+L    L ++K S      +   G + + +  +V   ++
Sbjct: 16  KGWLLKEGGKGGNLTKKKRWFVLTPNSLDYYKSSER---NALKLGSLVLNSLCSVVPPDE 72

Query: 88  LLNKPFAFELSTGEYTM---------YFVADTEKEKEEWINSIGRAI 125
            + K       TG +T          Y     ++E   W+N+I   I
Sbjct: 73  KVYK------ETGYWTFTVHGRKHSYYLYTKLQEEANRWVNAIQEVI 113

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the third MyoX PH repeat. PLEKHH3/Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) member 3 is also part of this CD and like MyoX contains a FERM domain, a MyTH4 domain, and a single PH domain. Not much is known about the function of PLEKHH3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 123

>gnl|CDD|241471 cd13317, PH_PLEKHO1_PLEKHO2, Pleckstrin homology domain-containing family O Pleckstrin homology domain

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 11/103 (10%)

Query: 25  SNPERSGWLTK-QGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR 83
             PE++GW+ K  G ++  W+ R+ +LK+ +L  ++    +           +   L  +
Sbjct: 3   PQPEKAGWIKKSSGIFLGIWKDRYVVLKKTQLLVYEKEQEVFDLED----YELCEYLRCQ 58

Query: 84  GAEDLLNKPFAFEL--STGEYTM----YFVADTEKEKEEWINS 120
            +     +   F L  S           F A + +EKE WIN+
Sbjct: 59  KSRSKKKRKSRFTLIRSPQPGNKVPDLKFQAVSPEEKESWINA 101

The PLEKHO family members are PLEKHO1 (also called CKIP-1/Casein kinase 2-interacting protein 1/CK2-interacting protein 1) and PLEKHO2 (PLEKHQ1/PH domain-containing family Q member 1). They both contain a single PH domain. PLEKHO1 acts as a scaffold protein that functions in plasma membrane recruitment, transcriptional activity modulation, and posttranscriptional modification regulation. As an adaptor protein it is involved in signaling pathways, apoptosis, differentiation, cytoskeleton, and bone formation. Not much is know about PLEKHO2. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 101

>gnl|CDD|241432 cd13278, PH_Bud4, Bud4 Pleckstrin homology (PH) domain

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 23/117 (19%)

Query: 31  GWLTKQGDYIKTWRRRWFILKQGKLFWF--------------KDSHNITPGSTPRGVIPV 76
           G+L ++G   + WRRR+F L+  KL  +              K    +            
Sbjct: 23  GYLLQEGGDCEYWRRRFFKLQGTKLVAYHEVTRKPRATINLLKVVDVVDDDDARERTSSF 82

Query: 77  GTCLTVRGAEDLLNKPFAFEL--STGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
               T     DL+     F L  + GE  + F AD+++EK +W + + + +V+ +R 
Sbjct: 83  KRNFT-----DLVLFEECFRLVFANGE-VIDFYADSKEEKADWYSKL-KEVVELNRF 132

Bud4 is an anillin-like yeast protein involved in the formation and the disassembly of the double ring structure formed by the septins during cytokinesis. Bud4 acts with Bud3 and and in parallel with septin phosphorylation by the p21-activated kinase Cla4 and the septin-dependent kinase Gin4. Bud4 is regulated by the cyclin-dependent protein kinase Cdk1, the master regulator of cell cycle progression. Bud4 contains an anillin-like domain followed by a PH domain. In addition there are two consensus Cdk phosphorylation sites: one at the N-terminus and one right before the C-terminal PH domain. Anillins also have C-terminal PH domains. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 139

>gnl|CDD|241403 cd13249, PH_anillin_2, Anillin Pleckstrin homology (PH) domain

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 30  SGWLTKQ--GDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE- 86
           SG+L++Q   + +++W R + +LK G L  +     I     P   IP+     +R  + 
Sbjct: 5   SGYLSQQQSVEGLQSWTRLYCVLKGGNLLCYYSPEEIEAKVEPLLTIPINKDTRIRAVDK 64

Query: 87  DLLNKPFAFELST----GEYTMYFVADTEKEKEEW 117
           D   + F   +       E T  F AD+ ++ + W
Sbjct: 65  DAQGRSFNLSIINPYPGDEVTHVFSADSREDLQLW 99

Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241445 cd13291, PH_ORP10_ORP11, Human Oxysterol binding protein (OSBP) related proteins 10 and 11 (ORP10 and ORP11) Pleckstrin homology (PH) domain

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 14/103 (13%)

Query: 31  GWLTKQGDYIKTWRRRWFIL--KQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           G L+K  + +K W+ RWF+L  + G L +F    +      PRG +P+   +     ED 
Sbjct: 3   GQLSKYTNVVKGWQNRWFVLDPEAGSLEYFVSEESKN--QKPRGSLPLAGAVISPSDED- 59

Query: 89  LNKPFAFEL--STGEYTMY-FVADTEKEKEEWINSIGRAIVQH 128
                 F +  + GE  MY   A   KE++EW+N + RA+ +H
Sbjct: 60  ---SHTFTVNAANGE--MYKLRAADAKERQEWVNRL-RAVAEH 96

Human ORP10 is involvedt in intracellular transport or organelle positioning and is proposed to function as a regulator of cellular lipid metabolism. Human ORP11 localizes at the Golgi-late endosome interface and is thought to form a dimer with ORP9 functioning as an intracellular lipid sensor or transporter. Both ORP10 and ORP11 contain a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 107

>gnl|CDD|241428 cd13274, PH_DGK_type2, Type 2 Diacylglycerol kinase Pleckstrin homology (PH) domain

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 30  SGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLL 89
            G L KQ    + W++R+F L+   L++ KDS ++           V  C T        
Sbjct: 3   EGPLLKQTSSFQRWKKRYFKLRGRTLYYAKDSKSLIFDEVDLSDASVAECSTK------- 55

Query: 90  NKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQ 127
           N   +F + T    +   A++ KE EEWI+++ + + Q
Sbjct: 56  NVNHSFTVITPFRKLILCAESRKEMEEWISAL-KTVQQ 92

DGK (also called DAGK) catalyzes the conversion of diacylglycerol (DAG) to phosphatidic acid (PA) utilizing ATP as a source of the phosphate. In non-stimulated cells, DGK activity is low and DAG is used for glycerophospholipid biosynthesis. Upon receptor activation of the phosphoinositide pathway, DGK activity increases which drives the conversion of DAG to PA. DGK acts as a switch by terminating the signalling of one lipid while simultaneously activating signalling by another. There are 9 mammalian DGK isoforms all with conserved catalytic domains and two cysteine rich domains. These are further classified into 5 groups according to the presence of additional functional domains and substrate specificity: Type 1 - DGK-alpha, DGK-beta, DGK-gamma - contain EF-hand motifs and a recoverin homology domain; Type 2 - DGK-delta, DGK-eta, and DGK-kappa- contain a pleckstrin homology domain, two cysteine-rich zinc finger-like structures, and a separated catalytic region; Type 3 - DGK-epsilon - has specificity for arachidonate-containing DAG; Type 4 - DGK-zeta, DGK-iota- contain a MARCKS homology domain, ankyrin repeats, a C-terminal nuclear localization signal, and a PDZ-binding motif; Type 5 - DGK-theta - contains a third cysteine-rich domain, a pleckstrin homology domain and a proline rich region. The type 2 DGKs are present as part of this Metazoan DGK hierarchy. They have a N-terminal PH domain, two cysteine rich domains, followed by bipartite catalytic domains, and a C-terminal SAM domain. Their catalytic domains and perhaps other DGK catalytic domains may function as two independent units in a coordinated fashion. They may also require other motifs for maximal activity because several DGK catalytic domains have very little DAG kinase activity when expressed as isolated subunits. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 97

>gnl|CDD|241284 cd01253, PH_ARHGAP21-like, ARHGAP21 and related proteins pleckstrin homology (PH) domain

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 40  IKTWRRRWFILKQGKLFWFKDSHNITPGSTPR----GVIPVGTCLTVRGAEDLLNKPFAF 95
            ++W++ W +L+   L+ +KD    +P  +        I + +C+ V  A     +   F
Sbjct: 21  DRSWKQVWAVLRGHSLYLYKDKRETSPALSAAEDSEQRIDIRSCI-VDIAYSYTKRKNVF 79

Query: 96  ELSTGEYTMY-FVADTEKEKEEWINSI 121
            L+T + + Y F A+   +   WI +I
Sbjct: 80  RLTTSDGSEYLFQAEDRDDMLGWIKAI 106

ARHGAP family genes encode Rho/Rac/Cdc42-like GTPase activating proteins with a RhoGAP domain. These proteins functions as a GTPase-activating protein (GAP) for RHOA and CDC42. ARHGAP21 controls the Arp2/3 complex and F-actin dynamics at the Golgi complex by regulating the activity of the small GTPase Cdc42. It is recruited to the Golgi by to GTPase, ARF1, through its PH domain and its helical motif. It is also required for CTNNA1 recruitment to adherens junctions. ARHGAP21 and it related proteins all contains a PH domain and a RhoGAP domain. Some of the members have additional N-terminal domains including PDZ, SH3, and SPEC. The ARHGAP21 PH domain interacts with the GTPbound forms of both ARF1 and ARF6 ARF-binding domain/ArfBD. The members here include: ARHGAP15, ARHGAP21, and ARHGAP23. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241391 cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6 pleckstrin homology (PH) domain, C-terminus

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 30  SGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPV-GTCLTVRGAEDL 88
           SG+L ++    K+W+R WF+LK   L+ +K S ++    +    IP+ G  +        
Sbjct: 2   SGYLYRRKRKKKSWKRLWFVLKDKVLYTYKASEDVVALES----IPLLGYTVVPAKEGFE 57

Query: 89  LNKPFAFEL-STGEYTMYFVADTEKEKEEWIN 119
            ++   F+L   G+    F AD  +  + WI 
Sbjct: 58  GDESLVFQLLHKGQLPYIFRADDAETAQRWIE 89

FGD5 regulates promotes angiogenesis of vascular endothelial growth factor (VEGF) in vascular endothelial cells, including network formation, permeability, directional movement, and proliferation. The specific function of FGD6 is unknown. In general, FGDs have a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activate the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the PH domain is involved in intracellular targeting of the DH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|241444 cd13290, PH_ORP9, Human Oxysterol binding protein related protein 9 Pleckstrin homology (PH) domain

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 19/107 (17%)

Query: 31  GWLTKQGDYIKTWRRRWFILKQ--GKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA--- 85
           G L+K  + +K W+ RWF+L    G L ++     +  GS  RG      C+ ++GA   
Sbjct: 3   GPLSKWTNVMKGWQYRWFVLDDNAGLLSYYTSKEKMMRGSR-RG------CVRLKGAVIG 55

Query: 86  ---EDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHS 129
              ED       F ++  + T +F A   +E+E WI ++   I++HS
Sbjct: 56  IDDED----DSTFTITVDQKTFHFQARDAEERERWIRALEDTILRHS 98

Human ORP9 is proposed to function in regulation of Akt phosphorylation. ORP9 has 2 forms, a long (ORP9L) and a short (ORP9S). ORP9L contains an N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. ORP1S is truncated and contains a FFAT motif and an OSBP-related domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 102

>gnl|CDD|241521 cd13370, PH_GAP1m_mammal-like, GTPase activating protein 1 m pleckstrin homology (PH) domain

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 41  KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTV-RGAEDLLNKPFAFELST 99
           K +++RWF L   +L + K       G      IPV   L V +  E   NK   F++  
Sbjct: 35  KNFKKRWFCLTSRELTYHKQ-----KGKEAIFTIPVKNILAVEKLEESAFNKKNMFQVIH 89

Query: 100 GEYTMYFVADTEKEKEEWINSIGR 123
            E  +Y  A+   E  EWI  + R
Sbjct: 90  SEKPLYVQANNCVEANEWIEVLSR 113

GAP1(m) (also called RASA2/RAS p21 protein activator (GTPase activating protein) 2) is a member of the GAP1 family of GTPase-activating proteins, along with RASAL1, GAP1(IP4BP), and CAPRI. With the notable exception of GAP1(m), they all possess an arginine finger-dependent GAP activity on the Ras-related protein Rap1. GAP1(m) contains two C2 domains, a PH domain, a RasGAP domain, and a BTK domain. Its C2 domains, like those of GAP1IP4BP, do not contain the C2 motif that is known to be required for calcium-dependent phospholipid binding. GAP1(m) is regulated by the binding of its PH domains to phophoinositides, PIP3 (phosphatidylinositol 3,4,5-trisphosphate). It suppresses RAS, enhancing the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, allowing control of cellular proliferation and differentiation. GAP1(m) binds inositol tetrakisphosphate (IP4). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 133

>gnl|CDD|241415 cd13261, PH_RasGRF1_2, Ras-specific guanine nucleotide-releasing factors 1 and 2 Pleckstrin homology (PH) domain

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 17/122 (13%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR----- 83
           R G+L+K+      W  +WF L Q  LF+F++  +    S P G+  +  C   R     
Sbjct: 7   RRGYLSKKSSDNSKWHTKWFALYQNLLFYFENESS----SRPSGLYLLEGCYCERAPSPK 62

Query: 84  ---GAEDLLNKPFAFELS---TGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESEV 137
                +D L K   F +S     +       +TE + + W+ +I +A   +S+ + + E 
Sbjct: 63  RAGKGKDHLEKQHYFTISFRHENQRQYELRTETETDCDTWVEAIKQAS--YSKLLLQKEE 120

Query: 138 VD 139
           ++
Sbjct: 121 LE 122

RasGRF1 (also called GRF1; CDC25Mm/Ras-specific nucleotide exchange factor CDC25; GNRP/Guanine nucleotide-releasing protein) and RasGRF2 (also called GRF2; Ras guanine nucleotide exchange factor 2) are a family of guanine nucleotide exchange factors (GEFs). They both promote the exchange of Ras-bound GDP by GTP, thereby regulating the RAS signaling pathway. RasGRF1 and RasGRF2 form homooligomers and heterooligomers. GRF1 has 3 isoforms and GRF2 has 2 isoforms. The longest isoforms of RasGRF1 and RasGRF2 contain the following domains: a Rho-GEF domain sandwiched between 2 PH domains, IQ domains, a REM (Ras exchanger motif) domain, and a Ras-GEF domainwhich gives them the capacity to activate both Ras and Rac GTPases in response to signals from a variety of neurotransmitter receptors. Their IQ domains allow them to act as calcium sensors to mediate the actions of NMDA-type and calcium-permeable AMPA-type glutamate receptors. GRF1 also mediates the action of dopamine receptors that signal through cAMP. GRF1 and GRF2 play strikingly different roles in regulating MAP kinase family members, neuronal synaptic plasticity, specific forms of learning and memory, and behavioral responses to psychoactive drugs. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 136

>gnl|CDD|241277 cd01244, PH_GAP1-like, RAS p21 protein activator (GTPase activating protein) family pleckstrin homology (PH) domain

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 41  KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTV-RGAEDLLNKPFAFELST 99
           K +++R+F L    L + K     + GS P   IP+   L V R  E        F++  
Sbjct: 19  KNFKKRYFRLTNEALSYSK-----SKGSQPLCSIPLQDILAVERVDEKSFKMKNMFQVVQ 73

Query: 100 GEYTMYFVADTEKEKEEWINSIGRA 124
            + T+Y  A    E  EW++++ + 
Sbjct: 74  PDRTLYLQAKNVVELNEWLSALRKV 98

RASAL1, GAP1(m), GAP1(IP4BP), and CAPRI are all members of the GAP1 family of GTPase-activating proteins. They contain N-terminal SH2-SH3-SH2 domains, followed by two C2 domains, a PH domain, a RasGAP domain, and a BTK domain. With the notable exception of GAP1(m), they all possess an arginine finger-dependent GAP activity on the Ras-related protein Rap1. They act as a suppressor of RAS enhancing the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, allowing control of cellular proliferation and differentiation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 107

>gnl|CDD|241416 cd13262, PH_RasSynGAP-like, Synaptic Ras-GTPase activating protein family Pleckstrin homology (PH) domain

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 9/38 (23%), Positives = 22/38 (57%)

Query: 88  LLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
           +L +P  F+++T   +  F   +  E+++WI ++ R +
Sbjct: 77  ILGQPHCFQVTTSSGSRCFACRSAAERDKWIENLRRTV 114

The RasSynGAP family is composed of members: DAB2IP, nGAP, and SynGAP. Neuronal growth-associated proteins (nGAPs) are growth cone markers found in multiple types of neurons. There are many nGAPs including Cap1 (Adenylate cyclase-associated protein 1), Capzb (Capping protein (actin filament) muscle Z-line, beta), Clptm1 (Cleft lip and palate associated transmembrane protein 1), Cotl1 (Coactosin-like 1), Crmp1 (Collapsin response mediator protein 1), Cyfip1 (Cytoplasmic FMR1 interacting protein 1), Fabp7 (Fatty acid binding protein 7, brain), Farp2 (FERM, RhoGEF and pleckstrin domain protein 2), Gap43 (Growth associated protein 43), Gnao1 (Guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O), Gnai2 (Guanine nucleotide binding protein (G protein), alpha inhibiting 2), Pacs1 (Phosphofurin acidic cluster sorting protein 1), Rtn1 (Reticulon 1), Sept2 (Septin 2), Snap25 (Synaptosomal-associated protein 25), Strap (Serine/threonine kinase receptor associated protein), Stx7 (Syntaxin 7), and Tmod2 (Tropomodulin 2). SynGAP, a neuronal Ras-GAP, has been shown display both Ras-GAP activity and Ras-related protein (Rap)-GAP activity. Saccharomyces cerevisiae Bud2 and GAP1 members CAPRI (Ca2+-promoted Ras inactivator) and RASAL (Ras-GTPase-activating-like protein) also possess this dual activity. Human DOC-2/DAB2-interacting protein (DAB2IP) is encoded by a tumor suppressor gene and a newly recognized member of the Ras-GTPase-activating family. DAB2IP is a critical component of many signal transduction pathways mediated by Ras and tumor necrosis factors including apoptosis pathways, and it is involved in the formation of many types of tumors. DAB2IP participates in regulation of gene expression and pluripotency of cells. It has been reported that DAB2IP was expressed in different tumor tissues. Little information is available concerning the expression levels of DAB2IP in normal tissues and cells, however, and no studies of its expression patterns during the development of human embryos have been reported. DAB2IP was expressed primarily in cell cytoplasm throughout the fetal development. The expression levels varied among tissues and different gestational ages. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 124

>gnl|CDD|241423 cd13269, PH_alsin, Alsin Pleckstrin homology (PH) domain

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 47  WFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYF 106
           WFIL       F D+      ST   + P+   L V    D  +   A +++T E +   
Sbjct: 31  WFIL-------FNDALVHAQFST-HHIFPL-ATLWVEPIPDEDSGQNALKITTPEESFTL 81

Query: 107 VADTEKEKEEWINSIGRAIVQ 127
           VA T +EK EW+ +I +AI Q
Sbjct: 82  VASTPQEKAEWLRAINQAIDQ 102

The ALS2 gene encodes alsin, a GEF, that has dual specificity for Rac1 and Rab5 GTPases. Alsin mutations in the form of truncated proteins are responsible for motor function disorders including juvenile-onset amyotrophic lateral sclerosis, familial juvenile primary lateral sclerosis, and infantile-onset ascending hereditary spastic paralysis. The alsin protein is widely expressed in the developing CNS including neurons of the cerebral cortex, brain stem, spinal cord, and cerebellum. Alsin contains a regulator of chromosome condensation 1 (RCC1) domain, a Rho guanine nucleotide exchanging factor (RhoGEF) domain, a PH domain, a Membrane Occupation and Recognition Nexus (MORN), a vacuolar protein sorting 9 (Vps9) domain, and a Dbl homology (DH) domain. Alsin interacts with Rab5 through its Vps9 domain and through this interaction modulates early endosome fusion and trafficking. The GEF activity of alsin towards Rab5 is regulated by Rac1 function. The GEF activity of alsin for Rac1 occurs via its DH domain and this interaction plays a role in promoting spinal motor neuron survival via multiple Rac-dependent signaling pathways. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241390 cd13236, PH2_FGD1-4, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins pleckstrin homology (PH) domain, C-terminus

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 41  KTWRRRWFILKQGK---LFWFKDSHNITPGSTPRGVIPVGTC-LTVRGAEDLLNKPFAFE 96
           KTW++ W ++ + +   L+ +    ++    T    IP+    ++V   E+ L+    F+
Sbjct: 21  KTWQKVWCVIPRTEPLVLYLYGAPQDVRAPRT----IPLPGYEVSVPPPEERLDGKHVFK 76

Query: 97  LSTGEYTMYFVADTEKEKEEWINSIGRA 124
           LS  + + YF A++E+ ++ W+ ++ RA
Sbjct: 77  LSQSKQSHYFSAESEELQQRWLEALSRA 104

In general, FGDs have a RhoGEF (DH) domain, followed by an N-terminal PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activates the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the N-terminal PH domain is involved in intracellular targeting of the DH domain. Not much is known about FGD2. FGD1 is the best characterized member of the group with mutations here leading to the X-linked disorder known as faciogenital dysplasia (FGDY). Both FGD1 and FGD3 are targeted by the ubiquitin ligase SCF(FWD1/beta-TrCP) upon phosphorylation of two serine residues in its DSGIDS motif and subsequently degraded by the proteasome. However, FGD1 and FGD3 induced significantly different morphological changes in HeLa Tet-Off cells and while FGD1 induced long finger-like protrusions, FGD3 induced broad sheet-like protrusions when the level of GTP-bound Cdc42 was significantly increased by the inducible expression of FGD3. They also reciprocally regulated cell motility in inducibly expressed in HeLa Tet-Off cells, FGD1 stimulated cell migration while FGD3 inhibited it. FGD1 and FGD3 therefore play different roles to regulate cellular functions, even though their intracellular levels are tightly controlled by the same destruction pathway through SCF(FWD1/beta-TrCP). FGD4 is one of the genes associated with Charcot-Marie-Tooth neuropathy type 4 (CMT4), a group of progressive motor and sensory axonal and demyelinating neuropathies that are distinguished from other forms of CMT by autosomal recessive inheritance. Those affected have distal muscle weakness and atrophy associated with sensory loss and, frequently, pes cavus foot deformity. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|241434 cd13280, PH_SIP3, Snf1p-interacting protein 3 Pleckstrin homology (PH) domain

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 30/110 (27%)

Query: 28  ERSGWLTKQGDYIKT---------WRRRWFILKQGKLFWFKDSHNITPGSTPRGV----- 73
           E+SGWL     Y+KT         W RRW  +K G       S + T       V     
Sbjct: 1   EKSGWL-----YMKTSVGKPNRTIWVRRWCFVKNGVFGMLSLSPSKT------YVEETDK 49

Query: 74  IPVGTC-LTVRGAEDLLNKPFAFELSTGEY-TMYFVADTEKEKEEWINSI 121
             V  C +     ED   + F FE+   +  ++   A+T KE + W+   
Sbjct: 50  FGVLLCNVRYAPEED---RRFCFEVKIFKDISIILQAETLKELKSWLTVF 96

SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. SIP3 contain an N-terminal Bin/Amphiphysin/Rvs (BAR) domain followed by a PH domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.92
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.91
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.91
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.91
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.9
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.9
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.89
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.89
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.89
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.89
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	99.88
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.87
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	99.85
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	99.85
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	99.84
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	99.83
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	99.81
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.8
KOG0930	395	consensus Guanine nucleotide exchange factor Cytoh	99.79
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	99.76
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	99.75
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	99.75
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	99.72
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	99.72
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	99.71
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	99.69
PF15409	89	PH_8: Pleckstrin homology domain	99.68
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	99.67
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	99.65
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	99.65
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	99.63
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	99.58
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	99.56
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	99.54
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	99.37
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	99.35
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	99.3
KOG1090	1732	consensus Predicted dual-specificity phosphatase [	99.24
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	99.23
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.22
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	99.22
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	99.2
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	99.18
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.16
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	99.15
KOG3640	1116	consensus Actin binding protein Anillin [Cell cycl	99.11
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	98.89
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	98.83
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.77
KOG3751	622	consensus Growth factor receptor-bound proteins (G	98.76
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	98.76
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	98.76
KOG4424	623	consensus Predicted Rho/Rac guanine nucleotide exc	98.69
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	98.67
PTZ00267	478	NIMA-related protein kinase; Provisional	98.64
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	98.59
KOG3543	1218	consensus Ca2+-dependent activator protein [Signal	98.59
KOG0932	774	consensus Guanine nucleotide exchange factor EFA6	98.57
PLN02866	1068	phospholipase D	98.47
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	98.43
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	98.42
KOG3723	851	consensus PH domain protein Melted [Signal transdu	98.37
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	98.31
KOG1739	611	consensus Serine/threonine protein kinase GPBP [Si	98.28
PTZ00283	496	serine/threonine protein kinase; Provisional	98.12
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	98.06
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	98.05
KOG0248	936	consensus Cytoplasmic protein Max-1, contains PH,	98.04
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	97.93
KOG3531	1036	consensus Rho guanine nucleotide exchange factor C	97.93
KOG1451	812	consensus Oligophrenin-1 and related Rho GTPase-ac	97.92
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	97.9
PF15408	104	PH_7: Pleckstrin homology domain	97.84
PF15406	112	PH_6: Pleckstrin homology domain	97.75
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	97.68
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	97.56
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	97.49
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	97.42
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	96.96
PF15404	185	PH_4: Pleckstrin homology domain	96.71
PF15411	116	PH_10: Pleckstrin homology domain	96.7
cd01248	115	PH_PLC Phospholipase C (PLC) pleckstrin homology (	96.55
KOG3549	505	consensus Syntrophins (type gamma) [Extracellular	96.18
KOG1738	638	consensus Membrane-associated guanylate kinase-int	95.98
KOG1737	799	consensus Oxysterol-binding protein [Lipid transpo	95.8
PF15405	135	PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.	95.77
KOG4407	1973	consensus Predicted Rho GTPase-activating protein	95.63
KOG4424	623	consensus Predicted Rho/Rac guanine nucleotide exc	95.6
KOG3523	695	consensus Putative guanine nucleotide exchange fac	95.42
KOG4807	593	consensus F-actin binding protein, regulates actin	95.22
KOG3727	664	consensus Mitogen inducible gene product (contains	95.05
KOG0248	936	consensus Cytoplasmic protein Max-1, contains PH,	94.26
KOG3531	1036	consensus Rho guanine nucleotide exchange factor C	93.97
cd01255	160	PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM	93.66
PF08458	110	PH_2: Plant pleckstrin homology-like region; Inter	93.42
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	93.13
KOG0517	2473	consensus Beta-spectrin [Cytoskeleton]	92.11
KOG4047	429	consensus Docking protein 1 (p62dok) [Signal trans	91.49
KOG3551	506	consensus Syntrophins (type beta) [Extracellular s	91.12
KOG2070	661	consensus Guanine nucleotide exchange factor [Nucl	90.77
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	89.98
KOG2996	865	consensus Rho guanine nucleotide exchange factor V	89.64
KOG1170	1099	consensus Diacylglycerol kinase [Lipid transport a	85.32
PF15277	91	Sec3-PIP2_bind: Exocyst complex component SEC3 N-t	84.51
KOG3551	506	consensus Syntrophins (type beta) [Extracellular s	81.69

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.92  E-value=8.3e-24  Score=131.97  Aligned_cols=95  Identities=25%  Similarity=0.553  Sum_probs=78.3

Q ss_pred             eEEEEEeeCCC-CCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeE----EeecCc-c-cCCCCceEEEEeCC
Q 041556           29 RSGWLTKQGDY-IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCL----TVRGAE-D-LLNKPFAFELSTGE  101 (143)
Q Consensus        29 ~~G~L~k~~~~-~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~----~~~~~~-~-~~~~~~~f~i~~~~  101 (143)
                      ++|||.|+|+. .+.|++|||||+++.|+||+++.    +..+.|.|+|..+.    +....+ . .....++|.|.+++
T Consensus         1 KeG~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~----d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~   76 (103)
T cd01251           1 KEGFMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPL----DAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPE   76 (103)
T ss_pred             CceeEEecCCCCCCCceeEEEEEeCCEEEEECCCC----CcCcCcEEEeeccccceeEeccCCccccccccceEEEEeCC
Confidence            58999999986 68999999999999999999988    67899999997542    222111 1 11234599999999


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556          102 YTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus       102 ~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      ++|+|+|+|++|+.+||.||+.++..
T Consensus        77 Rty~l~a~s~~e~~~Wi~ai~~v~~~  102 (103)
T cd01251          77 RKFLFACETEQDRREWIAAFQNVLSR  102 (103)
T ss_pred             eEEEEECCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999998764

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.91  E-value=1.2e-23  Score=130.71  Aligned_cols=94  Identities=22%  Similarity=0.438  Sum_probs=81.2

Q ss_pred             cceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc---CCCCceEEEEeCCeE
Q 041556           27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL---LNKPFAFELSTGEYT  103 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~---~~~~~~f~i~~~~~~  103 (143)
                      ++++|||.|+++..+.|++|||||+++.|+||+++.    +..+.+.|+|..+.+. ..++.   .+++++|.|.+++++
T Consensus         2 v~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~----~~~~~~~I~L~~~~v~-~~~~~~~~~~~~~~F~I~t~~rt   76 (100)
T cd01233           2 VSKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDK----DPVERGVINLSTARVE-HSEDQAAMVKGPNTFAVCTKHRG   76 (100)
T ss_pred             cceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCC----CccEeeEEEecccEEE-EccchhhhcCCCcEEEEECCCCE
Confidence            468999999999889999999999999999999988    6889999999976433 33221   246899999999999


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHH
Q 041556          104 MYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus       104 ~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      |+|+|+|++|+++||.||+...
T Consensus        77 ~~~~A~s~~e~~~Wi~ai~~~~   98 (100)
T cd01233          77 YLFQALSDKEMIDWLYALNPLY   98 (100)
T ss_pred             EEEEcCCHHHHHHHHHHhhhhh
Confidence            9999999999999999997654

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.91  E-value=9e-24  Score=130.07  Aligned_cols=92  Identities=28%  Similarity=0.498  Sum_probs=79.5

Q ss_pred             eEEEEEeeCC---CCCCeeeEEEEEECCeEEEEccCCCCCCCCCc-cEEEeCCCeEEeecCcccC---CCCceEEEEeCC
Q 041556           29 RSGWLTKQGD---YIKTWRRRWFILKQGKLFWFKDSHNITPGSTP-RGVIPVGTCLTVRGAEDLL---NKPFAFELSTGE  101 (143)
Q Consensus        29 ~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~-~~~i~L~~~~~~~~~~~~~---~~~~~f~i~~~~  101 (143)
                      .+|||.++++   .++.|++|||+|+++.|+||+...    ...+ .++|+|..|..|....+..   .++++|.|.+++
T Consensus         2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~----~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~   77 (101)
T cd01264           2 IEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKS----KDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD   77 (101)
T ss_pred             cceEEeecCccceeeecceeEEEEEeCCEEEEEeccC----ccCCCCceEEcccceEEeeccccccccccCcEEEEEcCC
Confidence            5899999988   789999999999999999999876    3334 4899999998877665421   347999999999


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHH
Q 041556          102 YTMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus       102 ~~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                      ++|+|+|+|+++++.||.+|+.|
T Consensus        78 rt~~l~A~se~e~e~WI~~i~~a  100 (101)
T cd01264          78 KTYILKAKDEKNAEEWLQCLNIA  100 (101)
T ss_pred             ceEEEEeCCHHHHHHHHHHHHhh
Confidence            99999999999999999999876

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=99.91  E-value=2.2e-23  Score=128.68  Aligned_cols=91  Identities=29%  Similarity=0.641  Sum_probs=77.8

Q ss_pred             ceEEEEEeeCCC----CCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC-e
Q 041556           28 ERSGWLTKQGDY----IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE-Y  102 (143)
Q Consensus        28 ~~~G~L~k~~~~----~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~-~  102 (143)
                      .++|||++++..    .+.|++|||||.++.|+||+++.    +..+.+.|+|.++.+....+.  .++++|+|.+++ +
T Consensus         1 ~~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~----~~~~~~~I~L~~~~v~~~~~~--~k~~~F~I~~~~~~   74 (96)
T cd01260           1 DCDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQ----DEKAEGLIFLSGFTIESAKEV--KKKYAFKVCHPVYK   74 (96)
T ss_pred             CceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCC----CCccceEEEccCCEEEEchhc--CCceEEEECCCCCc
Confidence            368999998653    35999999999999999999998    678899999999855433232  588999999887 9


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHH
Q 041556          103 TMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus       103 ~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                      +++|+|+|++++++||.||++|
T Consensus        75 ~~~f~a~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          75 SFYFAAETLDDLSQWVNHLITA   96 (96)
T ss_pred             EEEEEeCCHHHHHHHHHHHHhC
Confidence            9999999999999999999764

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.90  E-value=3.5e-23  Score=129.80  Aligned_cols=94  Identities=20%  Similarity=0.379  Sum_probs=78.0

Q ss_pred             ceEEEEEeeCCCC-----CCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccC------CCCceEE
Q 041556           28 ERSGWLTKQGDYI-----KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLL------NKPFAFE   96 (143)
Q Consensus        28 ~~~G~L~k~~~~~-----~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~------~~~~~f~   96 (143)
                      +++|+|.|++.+.     ..|++|||||.+++|+||+++.+.  ...++|.|+|..+..++...+..      .++++|+
T Consensus         1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~--~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~   78 (106)
T cd01238           1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK--RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQ   78 (106)
T ss_pred             CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc--ccCcceeEECCcceEEEEecCCcCcccccccCccEE
Confidence            4789999996533     389999999999999999998721  24799999999986666543321      3579999


Q ss_pred             EEeCCeEEEEEcCCHHHHHHHHHHHHH
Q 041556           97 LSTGEYTMYFVADTEKEKEEWINSIGR  123 (143)
Q Consensus        97 i~~~~~~~~~~a~s~~e~~~Wi~al~~  123 (143)
                      |.+++++||+.|+|++|+++||.||+.
T Consensus        79 i~t~~r~~yl~A~s~~er~~WI~ai~~  105 (106)
T cd01238          79 VVHDEGTLYVFAPTEELRKRWIKALKQ  105 (106)
T ss_pred             EEeCCCeEEEEcCCHHHHHHHHHHHHh
Confidence            999999999999999999999999975

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.90  E-value=7.6e-23  Score=125.90  Aligned_cols=89  Identities=21%  Similarity=0.459  Sum_probs=76.0

Q ss_pred             eEEEEEeeCC--CCCCeeeEEEEEEC--CeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEE
Q 041556           29 RSGWLTKQGD--YIKTWRRRWFILKQ--GKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTM  104 (143)
Q Consensus        29 ~~G~L~k~~~--~~~~w~~r~~vL~~--~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~  104 (143)
                      .+|||.|+++  ..+.|++|||||.+  ..|+||+++.    +..|.|.|+|.++..+....   ..++.|.|.+++++|
T Consensus         1 l~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~----d~~p~G~I~L~~~~~~~~~~---~~~~~F~i~t~~r~y   73 (95)
T cd01265           1 LCGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQ----DAKPLGRVDLSGAAFTYDPR---EEKGRFEIHSNNEVI   73 (95)
T ss_pred             CcccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCC----cccccceEECCccEEEcCCC---CCCCEEEEEcCCcEE
Confidence            3699999976  36899999999984  5899999988    68899999999975443322   247899999999999


Q ss_pred             EEEcCCHHHHHHHHHHHHHH
Q 041556          105 YFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus       105 ~~~a~s~~e~~~Wi~al~~~  124 (143)
                      +|+|+|++|++.||.||+.+
T Consensus        74 ~l~A~s~~e~~~Wi~al~~~   93 (95)
T cd01265          74 ALKASSDKQMNYWLQALQSK   93 (95)
T ss_pred             EEECCCHHHHHHHHHHHHhh
Confidence            99999999999999999865

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.89  E-value=3e-22  Score=122.17  Aligned_cols=89  Identities=28%  Similarity=0.553  Sum_probs=75.4

Q ss_pred             eEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC-eEEEEE
Q 041556           29 RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE-YTMYFV  107 (143)
Q Consensus        29 ~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~-~~~~~~  107 (143)
                      ++|||.|++...++|++|||||.++.|.||+++.+.  ...++|.|+|..+.++ ..+   .+++.|.|...+ ++|+|.
T Consensus         1 ~~G~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~--~~~~~G~I~L~~~~i~-~~~---~~~~~F~i~~~~~r~~~L~   74 (91)
T cd01247           1 TNGVLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEK--SHGCRGSIFLKKAIIA-AHE---FDENRFDISVNENVVWYLR   74 (91)
T ss_pred             CceEEEEeccccCCCceEEEEEECCEEEEEecCccC--cCCCcEEEECcccEEE-cCC---CCCCEEEEEeCCCeEEEEE
Confidence            479999999999999999999999999999998731  2457999999998544 222   357899996655 999999


Q ss_pred             cCCHHHHHHHHHHHHH
Q 041556          108 ADTEKEKEEWINSIGR  123 (143)
Q Consensus       108 a~s~~e~~~Wi~al~~  123 (143)
                      |+|++|++.|+.||++
T Consensus        75 A~s~~e~~~Wi~al~~   90 (91)
T cd01247          75 AENSQSRLLWMDSVVR   90 (91)
T ss_pred             eCCHHHHHHHHHHHhh
Confidence            9999999999999975

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.89  E-value=4.1e-22  Score=124.01  Aligned_cols=93  Identities=28%  Similarity=0.568  Sum_probs=78.3

Q ss_pred             eEEEEEeeCCCCCCeeeEEEEEE--CCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc------cCCCCceEEEEeC
Q 041556           29 RSGWLTKQGDYIKTWRRRWFILK--QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED------LLNKPFAFELSTG  100 (143)
Q Consensus        29 ~~G~L~k~~~~~~~w~~r~~vL~--~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~------~~~~~~~f~i~~~  100 (143)
                      ++|||.|+|+..+.|++|||||.  ++.|.||+++.    +..+.|.|+|..+..+.....      .....+.|.|.++
T Consensus         1 ~~G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~----~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~   76 (101)
T cd01235           1 CEGYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFE----DTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTS   76 (101)
T ss_pred             CeEEEEEcCCCCCCccceEEEEECCCCEEEEecCCC----CCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeC
Confidence            48999999998899999999999  45999999987    788999999998765543211      1134578999999


Q ss_pred             CeEEEEEcCCHHHHHHHHHHHHHHH
Q 041556          101 EYTMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus       101 ~~~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      +++|+|+|++++|+.+|+.||+.++
T Consensus        77 ~r~~~~~a~s~~e~~~Wi~ai~~~i  101 (101)
T cd01235          77 KRTYNFLAENINEAQRWKEKIQQCI  101 (101)
T ss_pred             CceEEEECCCHHHHHHHHHHHHhhC
Confidence            9999999999999999999998764

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=99.89  E-value=9.5e-22  Score=126.86  Aligned_cols=95  Identities=41%  Similarity=0.815  Sum_probs=80.7

Q ss_pred             ceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC------
Q 041556           28 ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE------  101 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~------  101 (143)
                      .++|||.|+++..+.|++|||+|.++.|+||+++.    +..+.+.|+|.++.+.. .++ ..++++|+|..++      
T Consensus         1 ~k~G~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~----~~~~~g~I~L~~~~v~~-~~~-~~~~~~F~i~~~~~~~~i~   74 (125)
T cd01252           1 DREGWLLKQGGRVKTWKRRWFILTDNCLYYFEYTT----DKEPRGIIPLENVSIRE-VED-PSKPFCFELFSPSDKQQIK   74 (125)
T ss_pred             CcEEEEEEeCCCCCCeEeEEEEEECCEEEEEcCCC----CCCceEEEECCCcEEEE-ccc-CCCCeeEEEECCccccccc
Confidence            36899999998889999999999999999999988    67899999999875433 322 2578999987654      


Q ss_pred             ---------------eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          102 ---------------YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       102 ---------------~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                                     +.|+|+|+|++|+++|+.||++++...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~  116 (125)
T cd01252          75 ACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPN  116 (125)
T ss_pred             cccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence                           478899999999999999999988754

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=99.89  E-value=8e-22  Score=121.96  Aligned_cols=92  Identities=26%  Similarity=0.584  Sum_probs=77.9

Q ss_pred             ccceEEEEEeeCCCCCCeeeEEEEEECC------eEEEEccCCCCCC-CCCccEEEeCCCeEEeecCcccCCCCceEEEE
Q 041556           26 NPERSGWLTKQGDYIKTWRRRWFILKQG------KLFWFKDSHNITP-GSTPRGVIPVGTCLTVRGAEDLLNKPFAFELS   98 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~------~l~~y~~~~~~~~-~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~   98 (143)
                      ++.++|||.|+    +.|++|||||++.      .|.||+++++... ...|.++|+|..|..+...++. .++++|.|.
T Consensus         1 ~v~k~GyL~K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~-k~~~~f~i~   75 (101)
T cd01257           1 DVRKSGYLRKQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADA-KHRHLIALY   75 (101)
T ss_pred             CccEEEEEeEe----cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeecccc-ccCeEEEEE
Confidence            46799999997    6899999999977      7999999873211 2679999999999877654442 457999999


Q ss_pred             eCCeEEEEEcCCHHHHHHHHHHHH
Q 041556           99 TGEYTMYFVADTEKEKEEWINSIG  122 (143)
Q Consensus        99 ~~~~~~~~~a~s~~e~~~Wi~al~  122 (143)
                      ++++.|+|.|+|++|+++|+.+|.
T Consensus        76 t~dr~f~l~aese~E~~~Wi~~i~   99 (101)
T cd01257          76 TRDEYFAVAAENEAEQDSWYQALL   99 (101)
T ss_pred             eCCceEEEEeCCHHHHHHHHHHHh
Confidence            999999999999999999999995

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=99.88  E-value=8.5e-22  Score=122.30  Aligned_cols=91  Identities=33%  Similarity=0.606  Sum_probs=74.1

Q ss_pred             eEEEEEeeCC---------CCCCeeeEEEEEEC-CeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEE
Q 041556           29 RSGWLTKQGD---------YIKTWRRRWFILKQ-GKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELS   98 (143)
Q Consensus        29 ~~G~L~k~~~---------~~~~w~~r~~vL~~-~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~   98 (143)
                      ++|||.+.++         ..+.|++|||||.+ +.|+||++..   ....|+|.|+|..|..|....+..+++++|.|.
T Consensus         1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~---~~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~   77 (104)
T cd01236           1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEM---PTTLPQGTIDMNQCTDVVDAEARTGQKFSICIL   77 (104)
T ss_pred             CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCC---CCcccceEEEccceEEEeecccccCCccEEEEE
Confidence            4799999754         24689999999985 6666665542   146789999999987776665544667999999


Q ss_pred             eCCeEEEEEcCCHHHHHHHHHHHH
Q 041556           99 TGEYTMYFVADTEKEKEEWINSIG  122 (143)
Q Consensus        99 ~~~~~~~~~a~s~~e~~~Wi~al~  122 (143)
                      +++++|||.|+|++|+++|+.+|.
T Consensus        78 tp~R~f~l~Aete~E~~~Wi~~l~  101 (104)
T cd01236          78 TPDKEHFIKAETKEEISWWLNMLM  101 (104)
T ss_pred             CCCceEEEEeCCHHHHHHHHHHHH
Confidence            999999999999999999999985

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=99.87  E-value=2.8e-21  Score=121.67  Aligned_cols=92  Identities=29%  Similarity=0.519  Sum_probs=75.6

Q ss_pred             eEEEEEeeCC----CCCCeeeEEEEEECCe-------EEEEccCCCCCCCCCccEEEeCCCeEEeecCc----ccCCCCc
Q 041556           29 RSGWLTKQGD----YIKTWRRRWFILKQGK-------LFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE----DLLNKPF   93 (143)
Q Consensus        29 ~~G~L~k~~~----~~~~w~~r~~vL~~~~-------l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~----~~~~~~~   93 (143)
                      .+|||.|+++    ..+.|++|||||.++.       |.||+++.    ...+.+.|+|..+..++...    ......+
T Consensus         1 ~eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~----~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~   76 (108)
T cd01266           1 LEGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSR----KFKLEFVIDLESCSQVDPGLLCTAGNCIFGY   76 (108)
T ss_pred             CceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCC----CCccceEEECCccEEEcccccccccCcccce
Confidence            4799999987    3459999999999876       59999987    78899999999986654321    1123457


Q ss_pred             eEEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 041556           94 AFELSTGEYTMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus        94 ~f~i~~~~~~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                      .|.|.++.++|+|+|+|++|+++||.+|+..
T Consensus        77 ~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          77 GFDIETIVRDLYLVAKNEEEMTLWVNCICKL  107 (108)
T ss_pred             EEEEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence            7999999999999999999999999999753

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=99.85  E-value=3.2e-20  Score=113.15  Aligned_cols=88  Identities=31%  Similarity=0.725  Sum_probs=76.3

Q ss_pred             eEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCC--CccEEEeCCCeEEeecCcccCCCCceEEEEeCC-eEEE
Q 041556           29 RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGS--TPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE-YTMY  105 (143)
Q Consensus        29 ~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~--~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~-~~~~  105 (143)
                      ++|||.|+++..+.|++|||+|.++.|+||+++.    ..  .+.+.|+|.++.+. ...   ..+++|+|.+++ +.++
T Consensus         1 ~~G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~----~~~~~~~~~i~l~~~~~~-~~~---~~~~~F~i~~~~~~~~~   72 (91)
T cd01246           1 VEGWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKS----SMRGKPRGTILLSGAVIS-EDD---SDDKCFTIDTGGDKTLH   72 (91)
T ss_pred             CeEEEEEecccCCCceeeEEEEECCEEEEEecCc----cCCCCceEEEEeceEEEE-ECC---CCCcEEEEEcCCCCEEE
Confidence            5899999988789999999999999999999998    45  78999999997533 222   348999999876 9999


Q ss_pred             EEcCCHHHHHHHHHHHHHH
Q 041556          106 FVADTEKEKEEWINSIGRA  124 (143)
Q Consensus       106 ~~a~s~~e~~~Wi~al~~~  124 (143)
                      |+|+|.+|+..|+.||+.|
T Consensus        73 ~~a~s~~e~~~Wi~al~~a   91 (91)
T cd01246          73 LRANSEEERQRWVDALELA   91 (91)
T ss_pred             EECCCHHHHHHHHHHHHhC
Confidence            9999999999999999764

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=99.85  E-value=4.5e-20  Score=113.13  Aligned_cols=92  Identities=29%  Similarity=0.623  Sum_probs=75.8

Q ss_pred             eEEEEEeeCCC-CCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEEE
Q 041556           29 RSGWLTKQGDY-IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFV  107 (143)
Q Consensus        29 ~~G~L~k~~~~-~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~  107 (143)
                      ++|||.++++. .+.|++|||+|.++.|+||+++.+.  ...+.+.|+|..+.+ ...+....++++|+|.++++.++|+
T Consensus         1 k~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~--~~~~~~~i~l~~~~v-~~~~~~~~~~~~f~i~~~~~~~~f~   77 (94)
T cd01250           1 KQGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLKDY--DNAHVKEIDLRRCTV-RHNGKQPDRRFCFEVISPTKTWHFQ   77 (94)
T ss_pred             CcceEEEECCCcCCCceEEEEEEeCCeEEEEcCCccc--ccccceEEeccceEE-ecCccccCCceEEEEEcCCcEEEEE
Confidence            58999998765 7899999999999999999998721  256778999988743 3333322378999999999999999


Q ss_pred             cCCHHHHHHHHHHHHH
Q 041556          108 ADTEKEKEEWINSIGR  123 (143)
Q Consensus       108 a~s~~e~~~Wi~al~~  123 (143)
                      |+|+++++.|+.||+.
T Consensus        78 a~s~~~~~~Wi~al~~   93 (94)
T cd01250          78 ADSEEERDDWISAIQE   93 (94)
T ss_pred             CCCHHHHHHHHHHHhc
Confidence            9999999999999975

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=99.84  E-value=2.1e-20  Score=114.69  Aligned_cols=89  Identities=20%  Similarity=0.421  Sum_probs=76.1

Q ss_pred             EEEEEeeCCC-CCCeeeEEEEEEC----CeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCe--
Q 041556           30 SGWLTKQGDY-IKTWRRRWFILKQ----GKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEY--  102 (143)
Q Consensus        30 ~G~L~k~~~~-~~~w~~r~~vL~~----~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~--  102 (143)
                      .|||.|+++. .+.|++|||+|.+    +.|+||++..    +..|.+.|+|..+.+....+...++++||+|.++++  
T Consensus         2 ~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~----~~~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~   77 (98)
T cd01245           2 KGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPK----KTKPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPT   77 (98)
T ss_pred             CCccccCCCCcccccceeEEEEecCCCCceEEEEcCCC----CCCccceeeccccEEEEccccccCCCeEEEEecCCCCe
Confidence            5999999887 8999999999986    9999999998    788999999999844433444457899999999875  


Q ss_pred             EEEEEcCCHHHHHHHHHHHHH
Q 041556          103 TMYFVADTEKEKEEWINSIGR  123 (143)
Q Consensus       103 ~~~~~a~s~~e~~~Wi~al~~  123 (143)
                      .|+++|++ +|+++||.+|++
T Consensus        78 ~y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          78 VYYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             EEEEeCCH-HHHHHHHHHHhc
Confidence            78888888 999999999975

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=99.83  E-value=1.5e-19  Score=111.27  Aligned_cols=79  Identities=18%  Similarity=0.342  Sum_probs=68.4

Q ss_pred             CCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc-cCCCCceEEEEeCCeEEEEEcCCHHHHHHHHH
Q 041556           41 KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED-LLNKPFAFELSTGEYTMYFVADTEKEKEEWIN  119 (143)
Q Consensus        41 ~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~-~~~~~~~f~i~~~~~~~~~~a~s~~e~~~Wi~  119 (143)
                      ..|++|||+|++..|+||+++.     ..+.|.|+|..+..++...+ ...++++|+|.++++++||+|+|++|+++||.
T Consensus        19 ~n~KkRwF~Lt~~~L~Y~k~~~-----~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~s~~E~~~Wi~   93 (98)
T cd01244          19 LHFKKRYFQLTTTHLSWAKDVQ-----CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFEAPVEATDWLN   93 (98)
T ss_pred             cCCceeEEEECCCEEEEECCCC-----CceeeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECCCHHHHHHHHH
Confidence            6899999999999999999765     67999999998766655433 34567999999999999999999999999999


Q ss_pred             HHHHH
Q 041556          120 SIGRA  124 (143)
Q Consensus       120 al~~~  124 (143)
                      ||+.+
T Consensus        94 al~k~   98 (98)
T cd01244          94 ALEKQ   98 (98)
T ss_pred             HHhcC
Confidence            99753

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=99.81  E-value=2.8e-18  Score=106.12  Aligned_cols=97  Identities=31%  Similarity=0.701  Sum_probs=82.0

Q ss_pred             ceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc----cCCCCceEEEEeCCe-
Q 041556           28 ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED----LLNKPFAFELSTGEY-  102 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~----~~~~~~~f~i~~~~~-  102 (143)
                      +++|||.+++...+.|++|||+|.++.|++|+++.. .....+.+.|+|.++.+......    ....+++|.|..+++ 
T Consensus         2 ~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~-~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~   80 (104)
T PF00169_consen    2 IKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKD-KSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGK   80 (104)
T ss_dssp             EEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTTT-TTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSE
T ss_pred             EEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCcc-ccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCCc
Confidence            689999999977889999999999999999999872 12467899999999855443332    246789999999875 


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHH
Q 041556          103 TMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus       103 ~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      .++|+|+|++++..|+.+|+.++
T Consensus        81 ~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   81 SYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999875

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=99.80  E-value=1.6e-18  Score=107.99  Aligned_cols=90  Identities=32%  Similarity=0.632  Sum_probs=67.0

Q ss_pred             cceEEEEEeeCCCCCCeeeEEEEEE-CCeEEEEccCCCCCCCCCccEEEeCCCeEE----eecCcccCCCCceEEEEe--
Q 041556           27 PERSGWLTKQGDYIKTWRRRWFILK-QGKLFWFKDSHNITPGSTPRGVIPVGTCLT----VRGAEDLLNKPFAFELST--   99 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~-~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~----~~~~~~~~~~~~~f~i~~--   99 (143)
                      ++++|||.|+++..+.|++|||+|. ++.|+||++..    .....+.++|.+..+    +...+  ..+++.|.|..  
T Consensus         1 v~k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~----~~~~~~~i~l~~~~v~~~~~~~~~--~~~~~~F~i~~~~   74 (102)
T cd01241           1 VVKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKP----EDGDPFLPPLNNFSVAECQLMKTE--RPRPNTFIIRCLQ   74 (102)
T ss_pred             CcEEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCC----CccCccccccCCeEEeeeeeeecc--CCCcceEEEEecc
Confidence            3689999999999999999999999 78898888765    223345666666532    21112  25678999972  


Q ss_pred             ----CCeEEEEEcCCHHHHHHHHHHHHHH
Q 041556          100 ----GEYTMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus       100 ----~~~~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                          .++  +|+|+|++|+++||.||+.+
T Consensus        75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v  101 (102)
T cd01241          75 WTTVIER--TFHVESPEEREEWIHAIQTV  101 (102)
T ss_pred             CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence                234  45799999999999999875

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.5e-18  Score=122.39  Aligned_cols=97  Identities=41%  Similarity=0.762  Sum_probs=82.4

Q ss_pred             ccccceEEEEEeeCC-CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC-
Q 041556           24 WSNPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE-  101 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~-  101 (143)
                      +.++..+|||.|.++ ..+.|++|||+|++++||||.-..    ++.|+|.|+|.+..+.+..+  ..+|+||.|..++ 
T Consensus       257 ffnpdREGWLlKlgg~rvktWKrRWFiLtdNCLYYFe~tT----DKEPrGIIpLeNlsir~Ved--P~kP~cfEly~ps~  330 (395)
T KOG0930|consen  257 FFNPDREGWLLKLGGNRVKTWKRRWFILTDNCLYYFEYTT----DKEPRGIIPLENLSIREVED--PKKPNCFELYIPSN  330 (395)
T ss_pred             ccCccccceeeeecCCcccchhheeEEeecceeeeeeecc----CCCCCcceeccccceeeccC--CCCCCeEEEecCCC
Confidence            567999999999987 568999999999999999999887    89999999999864443333  3789999997542 


Q ss_pred             ---------------------eEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556          102 ---------------------YTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       102 ---------------------~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                                           ..|-++|.+.+|+++||.+|+.++.
T Consensus       331 ~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is  376 (395)
T KOG0930|consen  331 KGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS  376 (395)
T ss_pred             CcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence                                 1577999999999999999998876

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=99.76  E-value=4.1e-17  Score=101.44  Aligned_cols=98  Identities=22%  Similarity=0.302  Sum_probs=78.9

Q ss_pred             cceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCC-CCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEE
Q 041556           27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNI-TPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMY  105 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~-~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~  105 (143)
                      .+++|+|.|.+...+.|+.|||+|.++.|.|++..... ...-...+.++|.++.+.+...  ...+|.|.|....++++
T Consensus         2 ~ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~--~~~~~~F~I~~~~rsf~   79 (101)
T cd01219           2 LLKEGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDN--LERPHSFLVSGKQRCLE   79 (101)
T ss_pred             cccceEEEEEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCC--CCcCceEEEecCCcEEE
Confidence            37899999999877899999999999999998864310 0122356789999975544322  25789999999999999


Q ss_pred             EEcCCHHHHHHHHHHHHHHHH
Q 041556          106 FVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       106 ~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      ++|+|++|+.+|+.||+.++.
T Consensus        80 l~A~s~eEk~~W~~ai~~~i~  100 (101)
T cd01219          80 LQARTQKEKNDWVQAIFSIID  100 (101)
T ss_pred             EEcCCHHHHHHHHHHHHHHhh
Confidence            999999999999999999875

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=99.75  E-value=2.1e-17  Score=105.18  Aligned_cols=95  Identities=28%  Similarity=0.618  Sum_probs=73.7

Q ss_pred             ceEEEEEe-e-CCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecC---cccCCCCceEEEEeC--
Q 041556           28 ERSGWLTK-Q-GDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA---EDLLNKPFAFELSTG--  100 (143)
Q Consensus        28 ~~~G~L~k-~-~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~---~~~~~~~~~f~i~~~--  100 (143)
                      ...|||+. + .++.+.|++|||+|+++.|+||+.+.+ .....|.+.|+|.+|......   .+...+++.|.|...  
T Consensus         2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d-~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~   80 (122)
T cd01263           2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDD-EKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRP   80 (122)
T ss_pred             ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCc-cccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecc
Confidence            46899996 3 346789999999999999999998774 224789999999998554332   234578999998531  


Q ss_pred             C-----------------eE-EEEEcCCHHHHHHHHHHHHH
Q 041556          101 E-----------------YT-MYFVADTEKEKEEWINSIGR  123 (143)
Q Consensus       101 ~-----------------~~-~~~~a~s~~e~~~Wi~al~~  123 (143)
                      .                 +. ++|+|+|++|+++|+.||+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~  121 (122)
T cd01263          81 KMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS  121 (122)
T ss_pred             cccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence            1                 22 67999999999999999975

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=99.75  E-value=8e-17  Score=102.07  Aligned_cols=100  Identities=25%  Similarity=0.363  Sum_probs=77.8

Q ss_pred             eEEEEEeeC-----C-----CCCCeeeEEEEEECCeEEEEccCCCCCCC---CCccEEEeCCCeEEeecCcccCCCCceE
Q 041556           29 RSGWLTKQG-----D-----YIKTWRRRWFILKQGKLFWFKDSHNITPG---STPRGVIPVGTCLTVRGAEDLLNKPFAF   95 (143)
Q Consensus        29 ~~G~L~k~~-----~-----~~~~w~~r~~vL~~~~l~~y~~~~~~~~~---~~~~~~i~L~~~~~~~~~~~~~~~~~~f   95 (143)
                      ++|+|..+-     +     +.+.|+++||||+++.|++|+++......   ......|.|.++. +....++.+++++|
T Consensus         2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~-~~ia~dy~Kr~~VF   80 (117)
T cd01230           2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHAL-ATRASDYSKKPHVF   80 (117)
T ss_pred             CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccce-eEeeccccCCCcEE
Confidence            578887641     1     24689999999999999999998731111   2345688999874 33444556899999


Q ss_pred             EEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556           96 ELSTG-EYTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus        96 ~i~~~-~~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      .|.++ ++.|+|+|.+.+||+.||.+|+.+++..+
T Consensus        81 ~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~~s  115 (117)
T cd01230          81 RLRTADWREFLFQTSSLKELQSWIERINVVAAAFS  115 (117)
T ss_pred             EEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence            99987 58999999999999999999999877543

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=99.72  E-value=1.2e-16  Score=99.93  Aligned_cols=94  Identities=18%  Similarity=0.292  Sum_probs=68.3

Q ss_pred             eEEEEEeeC--------CCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC
Q 041556           29 RSGWLTKQG--------DYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG  100 (143)
Q Consensus        29 ~~G~L~k~~--------~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~  100 (143)
                      ++|+|..+.        ...+.|++|||+|.++.|++|+++............|++.++ .++..++..+++++|.|..+
T Consensus         1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~-~i~~~~~~~k~~~~F~l~~~   79 (104)
T cd01253           1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGA-QCEVASDYTKKKHVFRLRLP   79 (104)
T ss_pred             CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCC-EEEecCCcccCceEEEEEec
Confidence            468887531        135689999999999999999987631111111126778775 34444444467899999755


Q ss_pred             -CeEEEEEcCCHHHHHHHHHHHHH
Q 041556          101 -EYTMYFVADTEKEKEEWINSIGR  123 (143)
Q Consensus       101 -~~~~~~~a~s~~e~~~Wi~al~~  123 (143)
                       +..|+|+|++++++..|+.||+.
T Consensus        80 ~~~~~~f~a~s~e~~~~Wi~aL~~  103 (104)
T cd01253          80 DGAEFLFQAPDEEEMSSWVRALKS  103 (104)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhc
Confidence             58999999999999999999975

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=99.72  E-value=2.3e-16  Score=94.78  Aligned_cols=96  Identities=22%  Similarity=0.374  Sum_probs=79.2

Q ss_pred             cceEEEEEeeCCC-C-CCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC---
Q 041556           27 PERSGWLTKQGDY-I-KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE---  101 (143)
Q Consensus        27 ~~~~G~L~k~~~~-~-~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~---  101 (143)
                      +++.|||...+.+ + .+-+++||||++.+|+||+...    ++.++++|+|++..+.+......+++|+|.|..++   
T Consensus         1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~e----eKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rn   76 (110)
T cd01256           1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDE----EKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRN   76 (110)
T ss_pred             CeeeeeEEeeccceecCCCcceEEEEecceeeeecccc----cccccceeeccccEEEeecccccCCCcEEEEEcCcccc
Confidence            4788999987542 2 3579999999999999999998    78999999999975555555556889999999763   


Q ss_pred             -----eEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556          102 -----YTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       102 -----~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                           +.+.|+|+++++++.|.+++-+|..
T Consensus        77 vykd~k~lel~~~~~e~vdswkasflragv  106 (110)
T cd01256          77 VYKDYKQLELGCETLEEVDSWKASFLRAGV  106 (110)
T ss_pred             cccchheeeecCCCHHHHHHHHHHHHhccc
Confidence                 3567999999999999999977643

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=99.71  E-value=1.6e-16  Score=101.73  Aligned_cols=79  Identities=20%  Similarity=0.494  Sum_probs=66.9

Q ss_pred             CeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc-----------cCCCCceEEEEeCCeEEEEEcCC
Q 041556           42 TWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED-----------LLNKPFAFELSTGEYTMYFVADT  110 (143)
Q Consensus        42 ~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~-----------~~~~~~~f~i~~~~~~~~~~a~s  110 (143)
                      .|++|||+|+++.|.||+++.    +..+.++|.++....+.....           .....+.|.|.+++|.+.|.|+|
T Consensus        32 ~w~kRWFvlr~s~L~Y~~~~~----~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s  107 (121)
T cd01254          32 RWQKRWFIVKESFLAYMDDPS----SAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKS  107 (121)
T ss_pred             CCcceeEEEeCCEEEEEcCCC----CCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCC
Confidence            699999999999999999998    778999999986444443221           13567999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 041556          111 EKEKEEWINSIGRA  124 (143)
Q Consensus       111 ~~e~~~Wi~al~~~  124 (143)
                      +.++++|+.+|+.|
T Consensus       108 ~~~~~~Wi~~i~~a  121 (121)
T cd01254         108 SRKLKQWMASIEDA  121 (121)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999754

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=99.69  E-value=5.9e-16  Score=95.34  Aligned_cols=84  Identities=17%  Similarity=0.439  Sum_probs=67.3

Q ss_pred             CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC----eEEEEEcCCHHHH
Q 041556           39 YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE----YTMYFVADTEKEK  114 (143)
Q Consensus        39 ~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~----~~~~~~a~s~~e~  114 (143)
                      .+++|++|||+++++.|+||+++.+.  ...+...++|.+|.+. +......+++.|.+..+.    +.|+|.|+|++++
T Consensus        16 ~~K~~KrrwF~lk~~~L~YyK~kee~--~~~p~i~lnl~gcev~-~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqy   92 (106)
T cd01237          16 TLKGYKQYWFTFRDTSISYYKSKEDS--NGAPIGQLNLKGCEVT-PDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQY   92 (106)
T ss_pred             hhhhheeEEEEEeCCEEEEEccchhc--CCCCeEEEecCceEEc-ccccccccceEEEEecCCccCCeEEEEECCCHHHH
Confidence            35789999999999999999998732  3467778888898543 333223567999998775    8999999999999


Q ss_pred             HHHHHHHHHHH
Q 041556          115 EEWINSIGRAI  125 (143)
Q Consensus       115 ~~Wi~al~~~~  125 (143)
                      ..||.|++.|.
T Consensus        93 a~Wmaa~rlas  103 (106)
T cd01237          93 AKWMAACRLAS  103 (106)
T ss_pred             HHHHHHHHHhh
Confidence            99999998774

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15409 PH_8: Pleckstrin homology domain

Probab=99.68  E-value=1.5e-15  Score=91.18  Aligned_cols=85  Identities=22%  Similarity=0.627  Sum_probs=72.0

Q ss_pred             EEEEee-CCCCCCeeeEEEEE--ECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEEE
Q 041556           31 GWLTKQ-GDYIKTWRRRWFIL--KQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFV  107 (143)
Q Consensus        31 G~L~k~-~~~~~~w~~r~~vL--~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~  107 (143)
                      |||.|+ ....++|++|||+|  ..+.|.||.++.    +...+|.|++..+ ++...    .+...|.|.++...|+|.
T Consensus         1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~----~~~~rGsi~v~~a-~is~~----~~~~~I~idsg~~i~hLK   71 (89)
T PF15409_consen    1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQN----SGKLRGSIDVSLA-VISAN----KKSRRIDIDSGDEIWHLK   71 (89)
T ss_pred             CcceeeccccCCCceeEEEEEEcCCcEEEEEecCC----CCeeEeEEEccce-EEEec----CCCCEEEEEcCCeEEEEE
Confidence            677776 44678999999999  899999999988    5678899999986 33222    356899999999999999


Q ss_pred             cCCHHHHHHHHHHHHHH
Q 041556          108 ADTEKEKEEWINSIGRA  124 (143)
Q Consensus       108 a~s~~e~~~Wi~al~~~  124 (143)
                      |.|+++.+.|+.||+.+
T Consensus        72 a~s~~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   72 AKSQEDFQRWVSALQKA   88 (89)
T ss_pred             cCCHHHHHHHHHHHHhc
Confidence            99999999999999865

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=99.67  E-value=1.5e-15  Score=96.04  Aligned_cols=96  Identities=23%  Similarity=0.438  Sum_probs=57.3

Q ss_pred             eEEEEEeeCCC-CCCeeeEEEEEE-CCeEEEEccCCCCC---------CCCCccEEEeCCC----eEEeec-CcccCCCC
Q 041556           29 RSGWLTKQGDY-IKTWRRRWFILK-QGKLFWFKDSHNIT---------PGSTPRGVIPVGT----CLTVRG-AEDLLNKP   92 (143)
Q Consensus        29 ~~G~L~k~~~~-~~~w~~r~~vL~-~~~l~~y~~~~~~~---------~~~~~~~~i~L~~----~~~~~~-~~~~~~~~   92 (143)
                      ++|||+|.+.. .++|++|||+|. ++.|.||+.+....         ......+.+....    ...+.. ........
T Consensus         1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (112)
T PF15413_consen    1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHL   80 (112)
T ss_dssp             EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SS
T ss_pred             CCceEEEecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCC
Confidence            58999999885 789999999999 99999999943110         0122233333221    111110 01111345


Q ss_pred             ceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 041556           93 FAFELSTGEYTMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus        93 ~~f~i~~~~~~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                      ..|.|.++.++++|.|++.+|+..|+.||++|
T Consensus        81 ~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   81 KVFSIFTPTKTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             EEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred             CCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence            78889999999999999999999999999875

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=99.65  E-value=6.7e-15  Score=90.89  Aligned_cols=96  Identities=26%  Similarity=0.364  Sum_probs=69.4

Q ss_pred             ceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEEE
Q 041556           28 ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFV  107 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~  107 (143)
                      +++|+|.|..+. +.|+ |+|+|.++.|.|+.........-...+.++|.++.+.+ .++..+.+|+|+|.++++.+.++
T Consensus         3 ikEG~L~K~~~k-~~~~-R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~-~~~~~~~~~~F~I~~~~ks~~l~   79 (99)
T cd01220           3 IRQGCLLKLSKK-GLQQ-RMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEE-SEHEWGVPHCFTIFGGQCAITVA   79 (99)
T ss_pred             eeEEEEEEEeCC-CCce-EEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEee-ccCCcCCceeEEEEcCCeEEEEE
Confidence            789999998653 3455 55556555555554332100012468899999985443 33333568999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHH
Q 041556          108 ADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       108 a~s~~e~~~Wi~al~~~~~  126 (143)
                      |.|++|+.+|+.+|+.++.
T Consensus        80 A~s~~Ek~~Wi~~i~~aI~   98 (99)
T cd01220          80 ASTRAEKEKWLADLSKAIA   98 (99)
T ss_pred             CCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999875

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>smart00233 PH Pleckstrin homology domain

Probab=99.65  E-value=1.2e-14  Score=88.69  Aligned_cols=97  Identities=28%  Similarity=0.639  Sum_probs=78.2

Q ss_pred             ceEEEEEeeCC-CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc-CCCCceEEEEeCCe-EE
Q 041556           28 ERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL-LNKPFAFELSTGEY-TM  104 (143)
Q Consensus        28 ~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~-~~~~~~f~i~~~~~-~~  104 (143)
                      +++|||.++.. ....|+++||+|.++.|.+|+..... ....+...|+|.++.+....... ...+++|.|..+++ .+
T Consensus         2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~-~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~   80 (102)
T smart00233        2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKAK-KDYKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSY   80 (102)
T ss_pred             ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCcc-ccCCCceEEECCcCEEEeCCCCccCCCceEEEEEecCCceE
Confidence            68999999876 66799999999999999999988721 11567889999998443332210 24689999998877 99


Q ss_pred             EEEcCCHHHHHHHHHHHHHHH
Q 041556          105 YFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus       105 ~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      +|+|+|++++..|+.+|+.++
T Consensus        81 ~f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       81 LLQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             EEEcCCHHHHHHHHHHHHHhh
Confidence            999999999999999998775

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=99.63  E-value=1.2e-14  Score=92.87  Aligned_cols=96  Identities=27%  Similarity=0.544  Sum_probs=64.2

Q ss_pred             eEEEEEee-----CC-----CCCCeeeEEEEEECCeEEEEccCCCC-----C-----CCCCccEEEeCCCeEEeecCccc
Q 041556           29 RSGWLTKQ-----GD-----YIKTWRRRWFILKQGKLFWFKDSHNI-----T-----PGSTPRGVIPVGTCLTVRGAEDL   88 (143)
Q Consensus        29 ~~G~L~k~-----~~-----~~~~w~~r~~vL~~~~l~~y~~~~~~-----~-----~~~~~~~~i~L~~~~~~~~~~~~   88 (143)
                      ++|+|..+     ++     ..+.|+..|+||+++.|++|++....     .     ....|...|.|.++. +....++
T Consensus         2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~-a~~a~dY   80 (119)
T PF15410_consen    2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHAL-AEIASDY   80 (119)
T ss_dssp             -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-E-EEEETTB
T ss_pred             ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceE-EEeCccc
Confidence            68999874     11     34689999999999999999984310     0     012244569999874 4446667


Q ss_pred             CCCCceEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHH
Q 041556           89 LNKPFAFELSTG-EYTMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus        89 ~~~~~~f~i~~~-~~~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      .+++|+|.|.+. +..|+|+|.|+++|.+||.+|+.+.
T Consensus        81 ~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A  118 (119)
T PF15410_consen   81 TKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA  118 (119)
T ss_dssp             TTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred             ccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence            789999999987 5789999999999999999998764

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=99.58  E-value=4.6e-15  Score=89.94  Aligned_cols=103  Identities=21%  Similarity=0.361  Sum_probs=77.9

Q ss_pred             ceEEEEEeeCC-CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeec--Cc-------ccCCCCceEEE
Q 041556           28 ERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG--AE-------DLLNKPFAFEL   97 (143)
Q Consensus        28 ~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~--~~-------~~~~~~~~f~i   97 (143)
                      .++|||++.|+ .++.|++|||+|.+-..+-|.-..-..+...|.+.+.|+|.++.-.  .+       +..+..+.|..
T Consensus         3 k~sGyL~k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~a   82 (117)
T cd01234           3 KHCGYLYAIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKAEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNA   82 (117)
T ss_pred             ceeEEEEeccchhhhhhheeEEEEEchhHHHHHHHhhhhhcCCchhheeecceEEeccCCCCCCcccccccccchhhhhe
Confidence            58999999998 7899999999999764444333222223578999999999865322  11       12245688888


Q ss_pred             EeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhcC
Q 041556           98 STGEYTMYFVADTEKEKEEWINSIGRAIVQHSR  130 (143)
Q Consensus        98 ~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~  130 (143)
                      +..+..+.|+++++.|+..|+.||-+|..+.-+
T Consensus        83 vkegd~~~fa~~de~~r~lwvqa~yratgqshk  115 (117)
T cd01234          83 VKEGDELKFATDDENERHLWVQAMYRATGQSHK  115 (117)
T ss_pred             eccCcEEEEeccchHHHHHHHHHHHHHcCcccC
Confidence            888999999999999999999999888765433

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=99.56  E-value=6.8e-14  Score=84.51  Aligned_cols=93  Identities=29%  Similarity=0.657  Sum_probs=74.0

Q ss_pred             eEEEEEeeCCCC-CCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC-eEEEE
Q 041556           29 RSGWLTKQGDYI-KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE-YTMYF  106 (143)
Q Consensus        29 ~~G~L~k~~~~~-~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~-~~~~~  106 (143)
                      ++|||.++.... ..|+++||+|.++.|.+|....... ...+.+.++|.++.+...... ...+++|.|...+ +.++|
T Consensus         1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~~-~~~~~~f~i~~~~~~~~~~   78 (96)
T cd00821           1 KEGYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSSKK-SYKPKGSIPLSGAEVEESPDD-SGRKNCFEIRTPDGRSYLL   78 (96)
T ss_pred             CcchhhhhhChhhCCccEEEEEEECCEEEEEECCCCCc-CCCCcceEEcCCCEEEECCCc-CCCCcEEEEecCCCcEEEE
Confidence            468998876544 7899999999999999999877200 157889999998644433322 2468999999886 99999


Q ss_pred             EcCCHHHHHHHHHHHHH
Q 041556          107 VADTEKEKEEWINSIGR  123 (143)
Q Consensus       107 ~a~s~~e~~~Wi~al~~  123 (143)
                      +|+|++++..|+.+|+.
T Consensus        79 ~~~s~~~~~~W~~~l~~   95 (96)
T cd00821          79 QAESEEEREEWIEALQS   95 (96)
T ss_pred             EeCCHHHHHHHHHHHhc
Confidence            99999999999999975

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=99.54  E-value=3e-13  Score=82.19  Aligned_cols=90  Identities=32%  Similarity=0.622  Sum_probs=72.5

Q ss_pred             EEEEEeeCCCC----CCeeeEEEEEECCeEEEEccCCCCCCCCCcc-EEEeCCCeEEeecCcccCCCCceEEEEeC---C
Q 041556           30 SGWLTKQGDYI----KTWRRRWFILKQGKLFWFKDSHNITPGSTPR-GVIPVGTCLTVRGAEDLLNKPFAFELSTG---E  101 (143)
Q Consensus        30 ~G~L~k~~~~~----~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~-~~i~L~~~~~~~~~~~~~~~~~~f~i~~~---~  101 (143)
                      +|||.+.+...    +.|+++||+|.++.|.+|+.+.    ..... +.+++.... +....+....+++|.|...   .
T Consensus         2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~----~~~~~~~~~~l~~~~-v~~~~~~~~~~~~F~i~~~~~~~   76 (99)
T cd00900           2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDD----KKEIKPGSIPLSEIS-VEEDPDGSDDPNCFAIVTKDRGR   76 (99)
T ss_pred             ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCC----CCcCCCCEEEccceE-EEECCCCCCCCceEEEECCCCCc
Confidence            68998887653    7899999999999999999987    34444 688888865 4443322246899999987   7


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHH
Q 041556          102 YTMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus       102 ~~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                      +.++|+|+++++++.|+.+|+.+
T Consensus        77 ~~~~~~~~~~~~~~~W~~al~~~   99 (99)
T cd00900          77 RVFVFQADSEEEAQEWVEALQQA   99 (99)
T ss_pred             EEEEEEcCCHHHHHHHHHHHhcC
Confidence            89999999999999999999753

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=99.37  E-value=3.6e-11  Score=74.68  Aligned_cols=98  Identities=21%  Similarity=0.184  Sum_probs=73.7

Q ss_pred             cceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEE
Q 041556           27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYF  106 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~  106 (143)
                      .+++|-|.|...  +..+.|+|+|.++.|.|-.... ....-...+.++|.++.+... .+....++.|+|.++.+++.+
T Consensus         4 li~eG~L~K~~r--k~~~~R~ffLFnD~LvY~~~~~-~~~~~~~~~~i~L~~~~v~~~-~d~~~~~n~f~I~~~~kSf~v   79 (104)
T cd01218           4 LVGEGVLTKMCR--KKPKQRQFFLFNDILVYGNIVI-SKKKYNKQHILPLEGVQVESI-EDDGIERNGWIIKTPTKSFAV   79 (104)
T ss_pred             EEecCcEEEeec--CCCceEEEEEecCEEEEEEeec-CCceeeEeeEEEccceEEEec-CCcccccceEEEecCCeEEEE
Confidence            367999998763  3567789999999888743211 001223467899999754433 332356899999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHHHHhh
Q 041556          107 VADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       107 ~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +|+|++|+.+|+.+|..|+.+.
T Consensus        80 ~A~s~~eK~eWl~~i~~ai~~~  101 (104)
T cd01218          80 YAATETEKREWMLHINKCVTDL  101 (104)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998765

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=99.35  E-value=2e-11  Score=75.79  Aligned_cols=93  Identities=17%  Similarity=0.377  Sum_probs=76.4

Q ss_pred             ceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc----CCCCceEEEEeCCeE
Q 041556           28 ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL----LNKPFAFELSTGEYT  103 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~----~~~~~~f~i~~~~~~  103 (143)
                      +++|||-.-...-+.|||+|++|..+.+.+|++..    ...+...|+|..+..++.....    ...+|||.|++.+.+
T Consensus         1 lkEGWmVHyT~~d~~rKRhYWrLDsK~Itlf~~e~----~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~~v   76 (117)
T cd01239           1 LKEGWMVHYTSSDNRRKKHYWRLDSKAITLYQEES----GSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTTNV   76 (117)
T ss_pred             CccceEEEEecCccceeeeEEEecCCeEEEEEcCC----CCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecCEE
Confidence            47999998877668899999999999999999988    7889999999998777654322    357899999999999


Q ss_pred             EEEEcC--------------------CHHHHHHHHHHHHHH
Q 041556          104 MYFVAD--------------------TEKEKEEWINSIGRA  124 (143)
Q Consensus       104 ~~~~a~--------------------s~~e~~~Wi~al~~~  124 (143)
                      ||...+                    ..+.++.|-.||++|
T Consensus        77 Y~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA  117 (117)
T cd01239          77 YFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA  117 (117)
T ss_pred             EEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence            998653                    234568899999864

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=99.30  E-value=2.1e-10  Score=70.85  Aligned_cols=96  Identities=19%  Similarity=0.502  Sum_probs=71.7

Q ss_pred             eEEEEEeeCC-C---CCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc-------ccCCCCceEEE
Q 041556           29 RSGWLTKQGD-Y---IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE-------DLLNKPFAFEL   97 (143)
Q Consensus        29 ~~G~L~k~~~-~---~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~-------~~~~~~~~f~i   97 (143)
                      ++|||..... .   .++|++.|.|+.+..+++|..+.+.. ...|..+++++....+....       +....|+.|+|
T Consensus         2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~-~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I   80 (112)
T cd01242           2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKE-NSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI   80 (112)
T ss_pred             cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCcccc-CCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence            6899987543 2   35899999999999999999877321 23477788887632222211       22456899999


Q ss_pred             EeC--CeEEEEEcCCHHHHHHHHHHHHHHH
Q 041556           98 STG--EYTMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus        98 ~~~--~~~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      ...  .+.++|-|+++.|.+.|+.+|.+-+
T Consensus        81 ~~~~~~~~lllLA~s~~ek~kWV~~L~~~~  110 (112)
T cd01242          81 LYANEARDLLLLAPQTDEQNKWVSRLVKKI  110 (112)
T ss_pred             EeCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence            866  4889999999999999999998654

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]

Probab=99.24  E-value=2.9e-12  Score=103.33  Aligned_cols=97  Identities=25%  Similarity=0.529  Sum_probs=83.2

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEE--CCeEEEEccCCCCCCCCCccEEEeCCCeEEeec-CcccCCCCceEEEEeCC
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILK--QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG-AEDLLNKPFAFELSTGE  101 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~--~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~-~~~~~~~~~~f~i~~~~  101 (143)
                      .+.+.+|+|+|+|..++.|+.|||||.  .++|+||++-.    +..|+|.|+|.....+.. .+.....+-.|.+.+.+
T Consensus      1632 eNr~~eG~LyKrGA~lK~Wk~RwFVLd~~khqlrYYd~~e----dt~pkG~IdLaevesv~~~~~k~vdekgffdlktt~ 1707 (1732)
T KOG1090|consen 1632 ENRIPEGYLYKRGAKLKLWKPRWFVLDPDKHQLRYYDDFE----DTKPKGCIDLAEVESVALIGPKTVDEKGFFDLKTTN 1707 (1732)
T ss_pred             cccCcccchhhcchhhcccccceeEecCCccceeeecccc----cccccchhhhhhhhhhcccCccccCccceeeeehhh
Confidence            355679999999999999999999996  57999999998    789999999987544433 23334678899999999


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHH
Q 041556          102 YTMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus       102 ~~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      ++|-|+|.+...+++|+..|+.++
T Consensus      1708 rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1708 RVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhh
Confidence            999999999999999999999875

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=99.23  E-value=6.1e-11  Score=73.38  Aligned_cols=97  Identities=16%  Similarity=0.279  Sum_probs=68.2

Q ss_pred             eEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc----cCCCCceEEEEeC----
Q 041556           29 RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED----LLNKPFAFELSTG----  100 (143)
Q Consensus        29 ~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~----~~~~~~~f~i~~~----  100 (143)
                      .+|+|+.+..+.++|+++||+|+.+-|+|+.... .....+..+...+++..+......    ....+++|.|..+    
T Consensus         2 ~~g~LylK~~gkKsWKk~~f~LR~SGLYy~~Kgk-sk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~q~   80 (114)
T cd01259           2 MEGPLYLKADGKKSWKKYYFVLRSSGLYYFPKEK-TKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGDQS   80 (114)
T ss_pred             ccceEEEccCCCccceEEEEEEeCCeeEEccCCC-cCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccccCc
Confidence            5899999988889999999999999998877655 111222334556666433322211    1234689988654    


Q ss_pred             ---CeEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556          101 ---EYTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       101 ---~~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                         ....+|+|+++..+..|+.|||-+.-
T Consensus        81 ~~s~~ik~lCaeDe~t~~~W~ta~Ri~Ky  109 (114)
T cd01259          81 KGSQSIKYLCAEDLPTLDRWLTAIRIAKY  109 (114)
T ss_pred             ccchhheeeccCCHHHHHHHHHHHHHHhh
Confidence               12468999999999999999986643

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.22  E-value=3.1e-11  Score=94.43  Aligned_cols=99  Identities=19%  Similarity=0.357  Sum_probs=82.4

Q ss_pred             cceEEEEEeeCC-----CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc-ccCCCCceEEEEeC
Q 041556           27 PERSGWLTKQGD-----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE-DLLNKPFAFELSTG  100 (143)
Q Consensus        27 ~~~~G~L~k~~~-----~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~-~~~~~~~~f~i~~~  100 (143)
                      +.++|.|.++..     +.+.+|+|||.|+...|.|.|++.     ..+.+.|+|..+..++..+ ...+.+|+|+|+..
T Consensus       565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~-----~q~~~~Ipl~nI~avEklee~sF~~knv~qVV~~  639 (800)
T KOG2059|consen  565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPG-----KQPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHT  639 (800)
T ss_pred             eecccceEeccccccchhhhhhhheEEEeccceeEEecCCc-----cCcccceeHHHHHHHHHhhhhccCCCceEEEEec
Confidence            456777777633     225789999999999999999986     7789999999876666543 34678999999999


Q ss_pred             CeEEEEEcCCHHHHHHHHHHHHHHHHhhcC
Q 041556          101 EYTMYFVADTEKEKEEWINSIGRAIVQHSR  130 (143)
Q Consensus       101 ~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~  130 (143)
                      +++.|++|.+..|..+|+++|+++...+..
T Consensus       640 drtly~Q~~n~vEandWldaL~kvs~~N~~  669 (800)
T KOG2059|consen  640 DRTLYVQAKNCVEANDWLDALRKVSCCNQN  669 (800)
T ss_pred             CcceeEecCCchHHHHHHHHHHHHhccCcc
Confidence            999999999999999999999999777653

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=99.22  E-value=9.4e-10  Score=69.01  Aligned_cols=96  Identities=20%  Similarity=0.368  Sum_probs=68.9

Q ss_pred             ceEEEEEeeC--CCCCCeeeEEEEEECCeEEEEccCCCCCC--CCCccEEEeCC-CeEEeecCc-------ccCCCCceE
Q 041556           28 ERSGWLTKQG--DYIKTWRRRWFILKQGKLFWFKDSHNITP--GSTPRGVIPVG-TCLTVRGAE-------DLLNKPFAF   95 (143)
Q Consensus        28 ~~~G~L~k~~--~~~~~w~~r~~vL~~~~l~~y~~~~~~~~--~~~~~~~i~L~-~~~~~~~~~-------~~~~~~~~f   95 (143)
                      .++|||....  +..++|++.|.|+.+..|++|..+.+...  ...+.-+++++ +...+....       +....|+.|
T Consensus         3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If   82 (122)
T cd01243           3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF   82 (122)
T ss_pred             cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence            4799998753  33579999999999999999998773211  12344567884 432332211       224568999


Q ss_pred             EEEeC-------CeEEEEEcCCHHHHHHHHHHHHH
Q 041556           96 ELSTG-------EYTMYFVADTEKEKEEWINSIGR  123 (143)
Q Consensus        96 ~i~~~-------~~~~~~~a~s~~e~~~Wi~al~~  123 (143)
                      +|...       ....+|-|+++.|.+.|+.||..
T Consensus        83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~  117 (122)
T cd01243          83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSE  117 (122)
T ss_pred             EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHH
Confidence            99752       47789999999999999999964

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=99.20  E-value=6.1e-10  Score=69.99  Aligned_cols=100  Identities=18%  Similarity=0.172  Sum_probs=73.8

Q ss_pred             ccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCC-------CCCccEEEeCCCeEEeecCcccCCCCceEEEE
Q 041556           26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITP-------GSTPRGVIPVGTCLTVRGAEDLLNKPFAFELS   98 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~-------~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~   98 (143)
                      ..+++|-|.+.....+..+.|+|+|.++.|.|-+.......       .-..++.++|..+.+....+ ...-+|.|.|.
T Consensus         3 elI~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d-~~~~knaF~I~   81 (112)
T cd01261           3 EFIMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD-SSEYKNAFEII   81 (112)
T ss_pred             cccccCcEEEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC-CcccCceEEEE
Confidence            45789999988765567899999999999988776441000       01224567888764443332 22458999999


Q ss_pred             eC-CeEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           99 TG-EYTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        99 ~~-~~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      +. ++.+.|+|.|.++..+|+.+|..++.
T Consensus        82 ~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~  110 (112)
T cd01261          82 LKDGNSVIFSAKNAEEKNNWMAALISVQT  110 (112)
T ss_pred             cCCCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence            75 68899999999999999999988764

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=99.18  E-value=6.6e-10  Score=68.42  Aligned_cols=92  Identities=17%  Similarity=0.439  Sum_probs=61.3

Q ss_pred             eEEEEEeeCC--CCCCeeeEEEEEECC--eE---EEEccC-CCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC
Q 041556           29 RSGWLTKQGD--YIKTWRRRWFILKQG--KL---FWFKDS-HNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG  100 (143)
Q Consensus        29 ~~G~L~k~~~--~~~~w~~r~~vL~~~--~l---~~y~~~-~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~  100 (143)
                      ++|||+.+..  ....|.+.||.....  .+   .+.... .+..........|.|..|++ ...+. ..+.+||.|..+
T Consensus         1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~-r~~~~-~dRRFCFei~~~   78 (104)
T cd01249           1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSR-RKTES-IDKRFCFDVEVE   78 (104)
T ss_pred             CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccc-cccCC-ccceeeEeeeec
Confidence            5799999854  334799999998753  32   222221 00001222334677777743 33332 378999999877


Q ss_pred             Ce--EEEEEcCCHHHHHHHHHHHH
Q 041556          101 EY--TMYFVADTEKEKEEWINSIG  122 (143)
Q Consensus       101 ~~--~~~~~a~s~~e~~~Wi~al~  122 (143)
                      .+  ++.|+|+|+.+...||.||.
T Consensus        79 ~~~~~~~lQA~Se~~~~~Wi~A~d  102 (104)
T cd01249          79 EKPGVITMQALSEKDRRLWIEAMD  102 (104)
T ss_pred             CCCCeEEEEecCHHHHHHHHHhhc
Confidence            65  79999999999999999984

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.16  E-value=7.9e-11  Score=86.11  Aligned_cols=101  Identities=27%  Similarity=0.571  Sum_probs=71.6

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEE-CCeEEEEccCCCCC-CCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC-
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILK-QGKLFWFKDSHNIT-PGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE-  101 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~-~~~l~~y~~~~~~~-~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~-  101 (143)
                      .+++++|||+|+|...+.|+.|||+|. ++.+.-|+.+.+.. ....|...+.+.+|.....  + ..+|+.|.|.... 
T Consensus        13 ~~vvkEgWlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~--e-rPrPntFiiRcLQW   89 (516)
T KOG0690|consen   13 EDVVKEGWLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKT--E-RPRPNTFIIRCLQW   89 (516)
T ss_pred             hhhHHhhhHhhcchhhhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhc--c-CCCCceEEEEeeee
Confidence            467899999999999999999999996 78899898776311 1112333333444422211  1 3689999997653 


Q ss_pred             ---eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          102 ---YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       102 ---~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                         -.-.|.++|.+++++|+.||+.+.+..
T Consensus        90 TTVIERTF~ves~~eRq~W~~AIq~vsn~l  119 (516)
T KOG0690|consen   90 TTVIERTFYVESAEERQEWIEAIQAVSNRL  119 (516)
T ss_pred             eeeeeeeeecCCHHHHHHHHHHHHHHhhhh
Confidence               223488999999999999999887654

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=99.15  E-value=1.5e-09  Score=67.28  Aligned_cols=92  Identities=23%  Similarity=0.373  Sum_probs=68.3

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECC-eEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeE
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQG-KLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYT  103 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~-~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~  103 (143)
                      ..++++|.+.|+.+.+  .++|+++|+++ .|+|++...     ...+|.|+++....++.     .....|.|.+++++
T Consensus        11 e~Il~~g~v~K~kgl~--~kkR~liLTd~PrL~Yvdp~~-----~~~KGeI~~~~~l~v~~-----k~~~~F~I~tp~Rt   78 (104)
T PF14593_consen   11 ELILKQGYVKKRKGLF--AKKRQLILTDGPRLFYVDPKK-----MVLKGEIPWSKELSVEV-----KSFKTFFIHTPKRT   78 (104)
T ss_dssp             --EEEEEEEEEEETTE--EEEEEEEEETTTEEEEEETTT-----TEEEEEE--STT-EEEE-----CSSSEEEEEETTEE
T ss_pred             CeEEEEEEEEEeeceE--EEEEEEEEccCCEEEEEECCC-----CeECcEEecCCceEEEE-----ccCCEEEEECCCcE
Confidence            4468999999998764  89999999988 666666654     56789999997655544     33579999999999


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556          104 MYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       104 ~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      |+|.. ...++..|+.+|+.+...+.
T Consensus        79 Y~l~d-~~~~A~~W~~~I~~~~~~~~  103 (104)
T PF14593_consen   79 YYLED-PEGNAQQWVEAIEEVKKQYY  103 (104)
T ss_dssp             EEEE--TTS-HHHHHHHHHHHHHHHH
T ss_pred             EEEEC-CCCCHHHHHHHHHHHHHHhc
Confidence            99987 44568889999999987653

>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=99.11  E-value=2.6e-10  Score=91.69  Aligned_cols=107  Identities=24%  Similarity=0.471  Sum_probs=84.2

Q ss_pred             ccceEEEEEee--CCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc---ccCCCCceEEEEe-
Q 041556           26 NPERSGWLTKQ--GDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE---DLLNKPFAFELST-   99 (143)
Q Consensus        26 ~~~~~G~L~k~--~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~---~~~~~~~~f~i~~-   99 (143)
                      ++.+.|||+.-  +.++..|.|+||+|.++.+.|.+.+.+.. .+.|.+.|+|..|+.-...+   +...++|.|.|.. 
T Consensus       989 dVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEk-rK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~ 1067 (1116)
T KOG3640|consen  989 DVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEK-RKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVW 1067 (1116)
T ss_pred             ceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhc-ccCcceeeehhhhhccccccchhhhccCCceeEEEee
Confidence            45678999874  44677899999999999999999887643 67899999999996643332   3367899999872 


Q ss_pred             --------C----Ce-EEEEEcCCHHHHHHHHHHHHHHHHhhcCCCC
Q 041556          100 --------G----EY-TMYFVADTEKEKEEWINSIGRAIVQHSRSVT  133 (143)
Q Consensus       100 --------~----~~-~~~~~a~s~~e~~~Wi~al~~~~~~~~~~~~  133 (143)
                              +    .+ ...|+|++.++++.|+.+|..++.......+
T Consensus      1068 rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~LRsW~~ 1114 (1116)
T KOG3640|consen 1068 RPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQLRSWRN 1114 (1116)
T ss_pred             cccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHHHHhcCC
Confidence                    0    23 5679999999999999999999887765544

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=98.89  E-value=1.7e-09  Score=66.42  Aligned_cols=97  Identities=18%  Similarity=0.321  Sum_probs=72.2

Q ss_pred             ccceEEEEEeeCC-CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC-CeE
Q 041556           26 NPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG-EYT  103 (143)
Q Consensus        26 ~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~-~~~  103 (143)
                      +++..||+.|.|+ +...|++|||.|-.+.|-+|....     ......|.+.....|.......+..+|+.|... +..
T Consensus         2 DcIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~-----~~~~eLi~M~~i~~V~~e~~~iK~~~CI~ik~k~~~k   76 (116)
T cd01240           2 DCIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESE-----ANKPELITMDQIEDVSVEFQQIKEENCILLKIRDEKK   76 (116)
T ss_pred             ceEEeeehhhhCCHHHHHHHHHHheeCcceeeeccccc-----ccCCcEEEeehhhhcchhheeeccCceEEEEEcCCce
Confidence            5689999999876 568999999999999999975443     345556666654333222122255788988654 667


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHh
Q 041556          104 MYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus       104 ~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      +++.++++.+..+|...|+.+-..
T Consensus        77 ~vlt~~d~i~l~qW~~elr~a~r~  100 (116)
T cd01240          77 IVLTNSDEIELKQWKKELRDAHRE  100 (116)
T ss_pred             EEEecCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999877543

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=98.83  E-value=4.9e-08  Score=77.64  Aligned_cols=101  Identities=17%  Similarity=0.238  Sum_probs=76.0

Q ss_pred             ccceEEEEEeeCC---CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecC-cccCCC--CceEEEEe
Q 041556           26 NPERSGWLTKQGD---YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA-EDLLNK--PFAFELST   99 (143)
Q Consensus        26 ~~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~-~~~~~~--~~~f~i~~   99 (143)
                      .+.++|||+..|.   +.....+|||||.+..+.|||.+...  ...|.....++++..|+.. ....+.  -+.|.|++
T Consensus         3 ~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~--~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn   80 (719)
T PLN00188          3 KVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQD--NQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN   80 (719)
T ss_pred             cceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCcc--ccccceeeccCCCceEeecCceEEcCceEEEEEEec
Confidence            4679999999765   45678999999999999999986521  3456677777766555443 222122  36777775


Q ss_pred             C---CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          100 G---EYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       100 ~---~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      .   ++...|.|.+.+|+..|+.||+.++.+.
T Consensus        81 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~  112 (719)
T PLN00188         81 KKEKYHRITMAAFNIQEALIWKEKIESVIDQH  112 (719)
T ss_pred             CCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence            4   5678899999999999999999999865

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.77  E-value=5.1e-09  Score=84.98  Aligned_cols=105  Identities=23%  Similarity=0.449  Sum_probs=81.7

Q ss_pred             cccceEEEEEeeCC-CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeE
Q 041556           25 SNPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYT  103 (143)
Q Consensus        25 ~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~  103 (143)
                      .+....|+|+++.. ..+.|.+|||...++.+.|+..-.    ........+|..|.+. ...+...+++||+|++++++
T Consensus       272 ~~~~~~~~l~~k~~~~~~tw~r~~f~~q~~~l~~~~r~~----~~~~~~~~dL~~csvk-~~~~~~drr~CF~iiS~tks  346 (785)
T KOG0521|consen  272 LGYRMEGYLRKKASNASKTWKRRWFSIQDGQLGYQHRGA----DAENVLIEDLRTCSVK-PDAEQRDRRFCFEIISPTKS  346 (785)
T ss_pred             chhhhhhhhhhhcccchhhHHhhhhhhhccccccccccc----cccccccccchhcccc-CCcccccceeeEEEecCCcc
Confidence            34556788887755 478999999999998888887765    3333567778887543 33333368999999999999


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHhhcCCCCc
Q 041556          104 MYFVADTEKEKEEWINSIGRAIVQHSRSVTE  134 (143)
Q Consensus       104 ~~~~a~s~~e~~~Wi~al~~~~~~~~~~~~~  134 (143)
                      +.|+|+++.+.+.||.+|+..+.........
T Consensus       347 ~~lQAes~~d~~~Wi~~i~nsi~s~l~~~~~  377 (785)
T KOG0521|consen  347 YLLQAESEKDCQDWISALQNSILSALNSAFL  377 (785)
T ss_pred             eEEecCchhHHHHHHHHHHHHHHHHHhccCc
Confidence            9999999999999999999998887554443

>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]

Probab=98.76  E-value=3.9e-08  Score=75.24  Aligned_cols=101  Identities=17%  Similarity=0.350  Sum_probs=69.5

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc----CCCCceEEEEeC
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL----LNKPFAFELSTG  100 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~----~~~~~~f~i~~~  100 (143)
                      +.+.++|+|+.+..+.+.||+.||||+...|||+-..+. ....+..+..++.+..+.......    ....++|-|...
T Consensus       315 ~~pei~GfL~~K~dgkKsWKk~yf~LR~SGLYys~K~ts-k~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K~~  393 (622)
T KOG3751|consen  315 SPPEIQGFLYLKEDGKKSWKKHYFVLRRSGLYYSTKGTS-KEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIKPN  393 (622)
T ss_pred             CCccccceeeecccccccceeEEEEEecCcceEccCCCC-CCchhhHHHHhcccCceEEeecchhccCCCCCceEEeeec
Confidence            457799999999999999999999999999998776651 112223334555543232222211    123577777643


Q ss_pred             -----Ce-EEEEEcCCHHHHHHHHHHHHHHHH
Q 041556          101 -----EY-TMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       101 -----~~-~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                           .+ .-+|+|+++..+..|+.||+-+..
T Consensus       394 ~~~~~~r~lk~lCAEDe~t~~~WltAiRl~Ky  425 (622)
T KOG3751|consen  394 KLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKY  425 (622)
T ss_pred             cccCcccceeeeecccchhHHHHHHHHHHHHH
Confidence                 22 358999999999999999996643

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=98.76  E-value=6.2e-07  Score=55.85  Aligned_cols=96  Identities=14%  Similarity=0.112  Sum_probs=69.8

Q ss_pred             ceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc-----CCCCceEEEEeC--
Q 041556           28 ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL-----LNKPFAFELSTG--  100 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~-----~~~~~~f~i~~~--  100 (143)
                      +++|-|.+.+.....=+.|+++|.++.|.|-+...-....-..++.|.|..+.++...+..     ..-+|.|.|...  
T Consensus         3 i~~Gel~~~s~~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~   82 (109)
T cd01224           3 FLQGEATRQKQNKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSEST   82 (109)
T ss_pred             eEeeeEEEEecccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCC
Confidence            6789988876422233689999999999998864311112346788999998666554432     123789999876  


Q ss_pred             CeEEEEEcCCHHHHHHHHHHHHH
Q 041556          101 EYTMYFVADTEKEKEEWINSIGR  123 (143)
Q Consensus       101 ~~~~~~~a~s~~e~~~Wi~al~~  123 (143)
                      +..+.|+|.|.++...|+.||..
T Consensus        83 ~~~~~f~~Kt~e~K~~Wm~a~~~  105 (109)
T cd01224          83 DEWYLFSFKSAERKHRWLSAFAL  105 (109)
T ss_pred             CeEEEEEECCHHHHHHHHHHHHH
Confidence            46799999999999999999964

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=98.76  E-value=4.9e-07  Score=55.51  Aligned_cols=91  Identities=20%  Similarity=0.300  Sum_probs=67.8

Q ss_pred             ccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC---e
Q 041556           26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE---Y  102 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~---~  102 (143)
                      ..+++|.+...+.    =+.|+.+|.+..|.+-+...+   .-..+..|.+++..+.+..+   ..++.|.|....   +
T Consensus         3 eLlleg~l~~~~~----~~eR~vFLFe~~ll~~K~~~~---~y~~K~~i~~~~l~i~e~~~---~d~~~F~v~~~~~p~~   72 (97)
T cd01222           3 DLLLEGRFREHGG----GKPRLLFLFQTMLLIAKPRGD---KYQFKAYIPCKNLMLVEHLP---GEPLCFRVIPFDDPKG   72 (97)
T ss_pred             ceeeeceEEeecC----CCceEEEEecccEEEEEecCC---eeEEEEEEEecceEEecCCC---CCCcEEEEEecCCCce
Confidence            4567888875543    256999999999999887652   23345577777765555444   348999997653   6


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHHH
Q 041556          103 TMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       103 ~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      .+.|+|.|.++.+.|+.+|+.++.
T Consensus        73 ~~~l~A~s~e~K~~W~~~i~~~i~   96 (97)
T cd01222          73 ALQLTARNREEKRIWTQQLKRAML   96 (97)
T ss_pred             EEEEEecCHHHHHHHHHHHHHHhh
Confidence            899999999999999999998763

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]

Probab=98.69  E-value=3e-08  Score=76.61  Aligned_cols=109  Identities=21%  Similarity=0.235  Sum_probs=80.8

Q ss_pred             CCccccccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCC-CCCCccEEEeCCCeEEeecCcccCCCCceEE
Q 041556           18 YTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNIT-PGSTPRGVIPVGTCLTVRGAEDLLNKPFAFE   96 (143)
Q Consensus        18 ~~~~~~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~-~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~   96 (143)
                      ...+.+-...+++|.+.|.......-+.||++|.+..+.|-+...-.. ........+.+.++.+.+..  ....++.|.
T Consensus       263 ~dIV~PsreLiKEG~l~Kis~k~~~~qeRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~~~--~~~~~~tF~  340 (623)
T KOG4424|consen  263 EDIVSPSRELIKEGQLQKISAKNGTTQERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQEDD--NEELPHTFI  340 (623)
T ss_pred             ccccCcHHHHhhccceeeeeccCCCcceeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhcccc--cccCCceEE
Confidence            334555567799999999987667889999999998887766544211 11223345566665433222  225689999


Q ss_pred             EEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           97 LSTGEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        97 i~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +..+.+.+.|+|.|+++..+|+++|+.+|...
T Consensus       341 ~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~  372 (623)
T KOG4424|consen  341 LTGKKRGVELQARTEQEKKEWVQAIQDAIDKH  372 (623)
T ss_pred             EecccceEEeecCchhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998764

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=98.67  E-value=1.5e-07  Score=58.64  Aligned_cols=93  Identities=22%  Similarity=0.400  Sum_probs=64.0

Q ss_pred             EEEEeeCC----CCCCeeeEEEEEECCeEEEEccCCCC-CCCCCccEEEeCC--CeEEeecCcccC---CCCceEEEEeC
Q 041556           31 GWLTKQGD----YIKTWRRRWFILKQGKLFWFKDSHNI-TPGSTPRGVIPVG--TCLTVRGAEDLL---NKPFAFELSTG  100 (143)
Q Consensus        31 G~L~k~~~----~~~~w~~r~~vL~~~~l~~y~~~~~~-~~~~~~~~~i~L~--~~~~~~~~~~~~---~~~~~f~i~~~  100 (143)
                      |||..+-.    ..+.|+.+|++|+++.|++|+..... ..=..|....+|-  -...+...+...   +++++|.|.+.
T Consensus         3 GW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg   82 (108)
T cd01258           3 GWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTG   82 (108)
T ss_pred             eecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcC
Confidence            78877622    24789999999999999999987631 0112233444443  111222222222   67899999987


Q ss_pred             C--eEEEEEcCCHHHHHHHHHHHHH
Q 041556          101 E--YTMYFVADTEKEKEEWINSIGR  123 (143)
Q Consensus       101 ~--~~~~~~a~s~~e~~~Wi~al~~  123 (143)
                      .  ..++|..++..|+..|..||++
T Consensus        83 ~~vesh~fsVEt~~dL~~W~raiv~  107 (108)
T cd01258          83 TQVENHYLRVETHRDLASWERALVR  107 (108)
T ss_pred             CceeeEEEEecCHHHHHHHHHHHhc
Confidence            5  5789999999999999999974

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.64  E-value=3e-07  Score=71.54  Aligned_cols=99  Identities=19%  Similarity=0.317  Sum_probs=66.5

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc--ccCCCCceEEEEe-CC
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE--DLLNKPFAFELST-GE  101 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~~f~i~~-~~  101 (143)
                      .+....||+.+.+...+ |++|||.+.++.+.+........ .......+.+.....+.+.+  ....++++|.|.+ .+
T Consensus       375 sDv~~~G~l~k~~~~~~-wk~ry~~l~~~~l~~~~~~~~~~-~~~~~~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~  452 (478)
T PTZ00267        375 SDVTHGGYLYKYSSDMR-WKKRYFYIGNGQLRISLSENPEN-DGVAPKSVNLETVNDVFPVPEVYSQKHPNQLVLWFNNG  452 (478)
T ss_pred             CCcccceEEeccCCCcc-hhhheEEecCCceEEEecccccc-CCCCCccccHHHhcccccccHHhcCCCCceEEEEecCC
Confidence            46778999999887554 99999999988777664433111 12222333332221222221  1235789999965 46


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHH
Q 041556          102 YTMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus       102 ~~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      +.++|.|+|++++++|+.+|+.++
T Consensus       453 ~~~~~~~~~~~~~~~W~~~~~~~~  476 (478)
T PTZ00267        453 QKIIAYAKTAEDRDQWISKFQRAC  476 (478)
T ss_pred             cEEEEecCChHHHHHHHHHHHHHh
Confidence            788899999999999999999886

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=98.59  E-value=9.1e-07  Score=52.94  Aligned_cols=86  Identities=21%  Similarity=0.278  Sum_probs=66.6

Q ss_pred             ceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCC-eEEeecCcccCCCCceEEEEeCCeEEEE
Q 041556           28 ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGT-CLTVRGAEDLLNKPFAFELSTGEYTMYF  106 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~-~~~~~~~~~~~~~~~~f~i~~~~~~~~~  106 (143)
                      ++.|.+.++.+.  .+++|-++|++.--.+|-++.    ....+|.|+++. ...++.     .....|.|.+++++|+|
T Consensus         2 l~~g~v~Kr~gl--f~kkR~LiLTd~PrL~yvdp~----~~~~KgeIp~s~~~l~v~~-----~~~~~F~I~Tp~rty~l   70 (89)
T cd01262           2 LKIGAVKKRKGL--FAKKRQLILTNGPRLIYVDPV----KKVVKGEIPWSDVELRVEV-----KNSSHFFVHTPNKVYSF   70 (89)
T ss_pred             ceeeeeeehhcc--ccceeeEEEecCceEEEEcCC----cCeEEeEecccccceEEEE-----ecCccEEEECCCceEEE
Confidence            568899988775  679999999987555566655    477889999988 544443     34589999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHHH
Q 041556          107 VADTEKEKEEWINSIGRAI  125 (143)
Q Consensus       107 ~a~s~~e~~~Wi~al~~~~  125 (143)
                      . +....+..|+.+|..+.
T Consensus        71 e-D~~~~a~~W~~~I~~~~   88 (89)
T cd01262          71 E-DPKGRASQWKKAIEDLQ   88 (89)
T ss_pred             E-CCCCCHHHHHHHHHHHh
Confidence            5 44578899999997653

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]

Probab=98.59  E-value=9.6e-09  Score=80.39  Aligned_cols=111  Identities=23%  Similarity=0.349  Sum_probs=84.6

Q ss_pred             ccccceEEEEEeeCC-CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEee--cCcccCCCCceEEEEeC
Q 041556           24 WSNPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR--GAEDLLNKPFAFELSTG  100 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~--~~~~~~~~~~~f~i~~~  100 (143)
                      ..+...+|||+..|. .++.|++|||+|..-..|.|.-+.-..+...|...|.|+|.++.-  +.+...+.++.|..+..
T Consensus       461 p~nmkhsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyrekkaepqel~qldgytvdytdp~pglqgg~~ffnavke  540 (1218)
T KOG3543|consen  461 PPNMKHSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKE  540 (1218)
T ss_pred             CCccccceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhhhcccChHHHhhccCeeeccCCCCCccccchHHHHHhcc
Confidence            345667999999876 478999999999865444444333222357899999999985532  22334566788888888


Q ss_pred             CeEEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCc
Q 041556          101 EYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTE  134 (143)
Q Consensus       101 ~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~~~~  134 (143)
                      +.+..|..+++.++..|+.||-++..+..++++.
T Consensus       541 gdtvifasddeqdr~lwvqamyratgqsykpvpp  574 (1218)
T KOG3543|consen  541 GDTVIFASDDEQDRHLWVQAMYRATGQSYKPVPP  574 (1218)
T ss_pred             CceEEeccCchhhhhHHHHHHHHhhCCcCCCCCc
Confidence            9999999999999999999999999888777664

>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=3.4e-08  Score=76.25  Aligned_cols=104  Identities=24%  Similarity=0.363  Sum_probs=71.5

Q ss_pred             cccceEEEEEee----------CCCCCCeeeEEEEEECCeEEEEccCCCCC---CCCCccEEEeCCCeEEeecCcccCCC
Q 041556           25 SNPERSGWLTKQ----------GDYIKTWRRRWFILKQGKLFWFKDSHNIT---PGSTPRGVIPVGTCLTVRGAEDLLNK   91 (143)
Q Consensus        25 ~~~~~~G~L~k~----------~~~~~~w~~r~~vL~~~~l~~y~~~~~~~---~~~~~~~~i~L~~~~~~~~~~~~~~~   91 (143)
                      ....+.|+|..+          ..+.++|+..|-+|++-.||+-++.-...   ...+....|.+..+ ..++..++.++
T Consensus       504 a~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kalse~~lknavsvHHA-LAt~AtdY~KK  582 (774)
T KOG0932|consen  504 AATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALSESDLKNAVSVHHA-LATPATDYSKK  582 (774)
T ss_pred             chhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchhhhhhhhhhhhhhh-hcCCCcccccC
Confidence            345578888764          12456899999999999888877543110   00011122333332 23455677889


Q ss_pred             CceEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556           92 PFAFELSTG-EYTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus        92 ~~~f~i~~~-~~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      +|+|.|.+. .+.|+|+|.+.+||+.||..|+-+.+.-+
T Consensus       583 p~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA~fS  621 (774)
T KOG0932|consen  583 PHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAAAFS  621 (774)
T ss_pred             CceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHHhcc
Confidence            999999886 69999999999999999999987766543

>PLN02866 phospholipase D

Probab=98.47  E-value=4.5e-06  Score=69.20  Aligned_cols=100  Identities=17%  Similarity=0.405  Sum_probs=73.7

Q ss_pred             cccceEEEEEee------CC-----CC---------CCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeE----
Q 041556           25 SNPERSGWLTKQ------GD-----YI---------KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCL----   80 (143)
Q Consensus        25 ~~~~~~G~L~k~------~~-----~~---------~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~----   80 (143)
                      ..-.+||++.|+      ++     ..         ..|+++|++++++.|.|..++.    +..+..++.++...    
T Consensus       180 g~K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~----~~~~~~v~lfD~~~~~~~  255 (1068)
T PLN02866        180 GPKLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPF----DAKPLDIIVFDVLPASNG  255 (1068)
T ss_pred             CCCcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCC----CCceeEEEEEeccccccc
Confidence            445689999998      21     11         2599999999999999997777    56677777655211    


Q ss_pred             ----EeecCc---ccCCCCceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           81 ----TVRGAE---DLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        81 ----~~~~~~---~~~~~~~~f~i~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                          .+....   +...-++.|.|.+.++.+.|.|.|...+..|+.+|+.+....
T Consensus       256 ~~~~~~~~~~~~k~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~~~~  310 (1068)
T PLN02866        256 NGEGQISLAKEIKERNPLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAGLRP  310 (1068)
T ss_pred             CCCcceeecccccccCCCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHHhcc
Confidence                111111   112447899999999999999999999999999999997543

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=98.43  E-value=1.2e-05  Score=49.93  Aligned_cols=100  Identities=19%  Similarity=0.232  Sum_probs=71.6

Q ss_pred             cccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC-
Q 041556           23 FWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE-  101 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~-  101 (143)
                      .+.++++-.-+..+......-..||++|..+.|++...... ..+....|.++|.+..+. ..++..+.++.|+|..+- 
T Consensus         8 ~lG~vi~mS~V~~~~~~~qe~~eRyLvLFp~~LlilS~s~r-~sGf~yqGkLPL~~i~v~-~lEd~e~~~~aFeI~G~li   85 (111)
T cd01225           8 TLGNVIHMSQVAVQYGAGEEKRERYLVLFPNVLLMLSASPR-MSGFIYQGKLPLTGIIVT-RLEDTEALKNAFEISGPLI   85 (111)
T ss_pred             hcCceEEEEEEEEecCCccccceeEEEEcCceEEEEEcCCC-ccceEEeeeecccccEEe-chHhccCccceEEEeccCc
Confidence            34556666666655544456689999999998887765331 113456788999997544 344434678999998763 


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHH
Q 041556          102 YTMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus       102 ~~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                      ....+.|.++.|+.+|+..|++.
T Consensus        86 ~~i~v~C~~~~e~~~Wl~hL~~~  108 (111)
T cd01225          86 ERIVVVCNNPQDAQEWVELLNAN  108 (111)
T ss_pred             CcEEEEeCCHHHHHHHHHHHHhh
Confidence            56778899999999999999864

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=98.42  E-value=1.8e-05  Score=50.83  Aligned_cols=99  Identities=16%  Similarity=0.270  Sum_probs=66.0

Q ss_pred             cceEEEEEeeCCCC-----CCeeeEEEEEEC--CeEEEEccCCC-CCCCCCccEEEeCCCeEEeecCccc--CC----CC
Q 041556           27 PERSGWLTKQGDYI-----KTWRRRWFILKQ--GKLFWFKDSHN-ITPGSTPRGVIPVGTCLTVRGAEDL--LN----KP   92 (143)
Q Consensus        27 ~~~~G~L~k~~~~~-----~~w~~r~~vL~~--~~l~~y~~~~~-~~~~~~~~~~i~L~~~~~~~~~~~~--~~----~~   92 (143)
                      .....||+|.++..     ....+|||.|..  .+|+|...... ..........+.|.....+......  ..    ..
T Consensus         9 ~~~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~   88 (123)
T PF12814_consen    9 LMIGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHN   88 (123)
T ss_pred             hhcccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccc
Confidence            34456888865432     578999999986  68888775431 0011122345667665454433211  11    35


Q ss_pred             ceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 041556           93 FAFELSTGEYTMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus        93 ~~f~i~~~~~~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      ++|.|.+++|.+-|.|++.++.+-|+.+|+--+
T Consensus        89 ~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~  121 (123)
T PF12814_consen   89 KSIIIVTPDRSLDLTAPSRERHEIWFNALRYLL  121 (123)
T ss_pred             eEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence            788888999999999999999999999997543

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]

Probab=98.37  E-value=7.2e-08  Score=74.71  Aligned_cols=126  Identities=24%  Similarity=0.436  Sum_probs=89.0

Q ss_pred             chhhhhhCCCCCCCCCCccccccccceEEEEEeeCC---CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCe
Q 041556            3 NIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGD---YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTC   79 (143)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~   79 (143)
                      +-|.-+++-++....+ =++...++..+|-|..+.+   +++.|+.|||.|.+..|.|.+....   +..-.+.|+|...
T Consensus       712 N~W~Cf~CnnPeKa~y-Fvn~~gqp~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~---~dS~~~~IDl~~I  787 (851)
T KOG3723|consen  712 NAWQCFMCNNPEKATY-FVNQDGQPLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSK---DDSDDCPIDLSKI  787 (851)
T ss_pred             CccceeecCChHHeee-eecCCCCchhcchhhhhccchhhhhhhccceEEecchhhhcccCCCC---CCCCCCCccHHHh
Confidence            4466666666544433 2334466788999986543   5678999999999999999666551   1122367888776


Q ss_pred             EEeecCc---ccCCCCceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhcCCC
Q 041556           80 LTVRGAE---DLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSV  132 (143)
Q Consensus        80 ~~~~~~~---~~~~~~~~f~i~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~~  132 (143)
                      ..|....   ....-+..|.|.+.+.++.|.|.++..+++|++.|+-+++.+....
T Consensus       788 RSVk~v~~kr~~rslpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~IavAHa~~r~  843 (851)
T KOG3723|consen  788 RSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAVAHAKERE  843 (851)
T ss_pred             hhHHHHHhhhhhcccchhhheeecCceEEeecccccCHHHHHHHHHHHHHHHHHHH
Confidence            5554222   1123478999999999999999999999999999998887665433

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=98.31  E-value=2.5e-05  Score=47.97  Aligned_cols=95  Identities=15%  Similarity=0.089  Sum_probs=65.8

Q ss_pred             ceEEEEEeeCC-CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEE
Q 041556           28 ERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYF  106 (143)
Q Consensus        28 ~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~  106 (143)
                      +++|-|..... ..+.-++..++|-+..|.+-.-..+  ..=.....++|.+..++.. .+...-++.|.|.++.+++.+
T Consensus         3 i~~G~l~e~~~~~~kp~~rv~~FLfND~Lvva~~~~~--~ky~~~~~~~L~~i~V~ni-~D~~~~kNafki~t~~~s~i~   79 (100)
T cd01226           3 ILYGELEEFDVETKKPVQRVMLFLLNDRLIVGNINAA--GKYVMESTYSLNSVAVVNV-KDRENAKKVLKLLIFPESRIY   79 (100)
T ss_pred             EEcCcEEEechhhCCccceEEEEEeccEEEEEEeccc--ceEEEEEEEehHHeEEEec-CCCcCcCceEEEEeCCccEEE
Confidence            45666665543 3345566657777777766533221  0223455888888654433 333356999999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHHH
Q 041556          107 VADTEKEKEEWINSIGRAI  125 (143)
Q Consensus       107 ~a~s~~e~~~Wi~al~~~~  125 (143)
                      +|+|.++..+|+..|.++.
T Consensus        80 qaes~~~K~eWl~~le~a~   98 (100)
T cd01226          80 QCESARIKTEWFEELEQAK   98 (100)
T ss_pred             EeCCHHHHHHHHHHHHHHh
Confidence            9999999999999999875

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]

Probab=98.28  E-value=2e-06  Score=65.62  Aligned_cols=93  Identities=26%  Similarity=0.538  Sum_probs=74.4

Q ss_pred             ceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEEE
Q 041556           28 ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFV  107 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~  107 (143)
                      ..+|+|.+.......|+.||++|+.+.|.||++..+.  ....+|.|.|..+ .+...+   ..-+.|.|......+++.
T Consensus        25 e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~--~hGcRgsi~l~ka-~i~ahE---fDe~rfdIsvn~nv~~lr   98 (611)
T KOG1739|consen   25 ERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDET--EHGCRGSICLSKA-VITAHE---FDECRFDISVNDNVWYLR   98 (611)
T ss_pred             hhcceeeeeecccccccceEEEEcccchhhhhhhhhh--hcccceeeEeccC-Cccccc---chhheeeeEeccceeeeh
Confidence            3577777777666789999999999999999998742  4568889999876 232222   346889998888899999


Q ss_pred             cCCHHHHHHHHHHHHHHHH
Q 041556          108 ADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       108 a~s~~e~~~Wi~al~~~~~  126 (143)
                      +.+.+..+.|+.+|.....
T Consensus        99 a~~~~hr~~w~d~L~wmk~  117 (611)
T KOG1739|consen   99 AQDPDHRQQWIDALEWMKT  117 (611)
T ss_pred             hcCcHHHHHHHHHHHHHhh
Confidence            9999999999999987655

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=98.12  E-value=1.3e-05  Score=62.79  Aligned_cols=99  Identities=17%  Similarity=0.327  Sum_probs=58.9

Q ss_pred             ccceEEEEEeeCCCCCCeeeEEEEEECC-----eEEEEccCCCCC---------CCCCccEEE--eCCCeEEeecCcc-c
Q 041556           26 NPERSGWLTKQGDYIKTWRRRWFILKQG-----KLFWFKDSHNIT---------PGSTPRGVI--PVGTCLTVRGAED-L   88 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~-----~l~~y~~~~~~~---------~~~~~~~~i--~L~~~~~~~~~~~-~   88 (143)
                      -.+.+|.+.+.++.+ .|++||+.+.+.     .+.- +...+..         ++......|  +++....+-+.+. +
T Consensus       372 ~~~~~g~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (496)
T PTZ00283        372 LTLYEGIVKKQSSDL-SWKRRYLCIRGELEKGETLTV-DVAPKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFPVPSKY  449 (496)
T ss_pred             ceeeeeEEecccCCc-ccceeEEEEeeecccCceeec-CCCccchhhhhhhhhhhhhhhhhcccCchhhhcccccccHHh
Confidence            356788888876655 499999988732     2211 1111000         000001111  2332222222222 2


Q ss_pred             C--CCCceEEEEe-CCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           89 L--NKPFAFELST-GEYTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        89 ~--~~~~~f~i~~-~~~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      .  +.+|.|-+.. +++.+.|+|.+.++++.||++|++++.
T Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (496)
T PTZ00283        450 TGSNAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG  490 (496)
T ss_pred             hCCCCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence            2  3589999964 588999999999999999999998865

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=98.06  E-value=0.0001  Score=46.47  Aligned_cols=102  Identities=15%  Similarity=0.178  Sum_probs=65.4

Q ss_pred             cceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCC--CCccEEEeCCCeEEeecC-ccc----CCCCceEEEEe
Q 041556           27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPG--STPRGVIPVGTCLTVRGA-EDL----LNKPFAFELST   99 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~--~~~~~~i~L~~~~~~~~~-~~~----~~~~~~f~i~~   99 (143)
                      +...|.|.........-+.||.+|.+..+.+-+........  -.-+..+.|..+.+.+.. .+.    ....|.|.|..
T Consensus         4 ~~~DGelk~k~~~~~k~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~   83 (116)
T cd01223           4 PLLDGEVRIKASEDQKTKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAH   83 (116)
T ss_pred             cccCCceEEeEeccCCCceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEe
Confidence            34556666554433346799999999999888876521100  112334555554333221 111    13468899987


Q ss_pred             CC--eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          100 GE--YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       100 ~~--~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      ..  ..+.|+|.|+++...|+.+|..|....
T Consensus        84 ~~~~~~~~f~~Ktee~K~kWm~al~~a~sni  114 (116)
T cd01223          84 KQGKTGFTFYFKTEHLRKKWLKALEMAMSNI  114 (116)
T ss_pred             cCCCccEEEEeCCHHHHHHHHHHHHHHHhcC
Confidence            64  568999999999999999999887643

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=98.05  E-value=0.00014  Score=46.57  Aligned_cols=77  Identities=18%  Similarity=0.271  Sum_probs=47.3

Q ss_pred             CeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc----------CCCCceEEEEe------CCeEEE
Q 041556           42 TWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL----------LNKPFAFELST------GEYTMY  105 (143)
Q Consensus        42 ~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~----------~~~~~~f~i~~------~~~~~~  105 (143)
                      .-+.+|++|.++.|.+-+.+..  .........+.... .++..+..          ...+|.|+|.-      ....+.
T Consensus        26 ~~~~vylfLFnDlLl~tkkK~~--~~f~V~dy~~r~~l-~V~~~e~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~el~  102 (125)
T cd01221          26 KARTIYLFLFNDLLLITKKKLG--STFVVFDYAPRSFL-RVEKIEPDNQKIPLGSNLVGRPNLFLLTLLRNADDKQAELL  102 (125)
T ss_pred             cCCcEEEEEecceEEEEEecCC--CeEEEEeeccccce-EEeecccccccccccccccCCCceEEEEeeccCCCCEEEEE
Confidence            3467899999999999876541  00011011112221 12211110          13589999962      246799


Q ss_pred             EEcCCHHHHHHHHHHH
Q 041556          106 FVADTEKEKEEWINSI  121 (143)
Q Consensus       106 ~~a~s~~e~~~Wi~al  121 (143)
                      |+|+|+.|+.+||.||
T Consensus       103 L~a~S~sdr~rWi~Al  118 (125)
T cd01221         103 LSADSQSDRERWLSAL  118 (125)
T ss_pred             EECCCHHHHHHHHHhc
Confidence            9999999999999998

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]

Probab=98.04  E-value=3.1e-06  Score=67.02  Aligned_cols=97  Identities=24%  Similarity=0.527  Sum_probs=77.1

Q ss_pred             cceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEE
Q 041556           27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYF  106 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~  106 (143)
                      ..+.||+.+.+...+.|++||||++.+++.||+.+...  ...+.+.+++.....+...    .....|++++....++|
T Consensus       249 ~ekSgy~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~--~~~p~s~~d~~s~~~~~~~----~~s~~fqli~~t~~~~~  322 (936)
T KOG0248|consen  249 MEKSGYWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNR--DEEPASKIDIRSVTKLEQQ----GAAYAFQLITSTDKMNF  322 (936)
T ss_pred             hhcccchhcchHHHHHHHhHheeeccceEEEEEcCCCc--cccccCcccccccceeecc----chhHHhhhhhhceeEEE
Confidence            45678888888777899999999999999999988732  3456777777753333332    35789999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHHHHhhc
Q 041556          107 VADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       107 ~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      -+++..-..+|+..|+..+....
T Consensus       323 ~~~s~~lt~dw~~iL~~~iKv~~  345 (936)
T KOG0248|consen  323 MTESERTTHDWVTILSAAIKATT  345 (936)
T ss_pred             eccChhhhhhhHHHHHHHHHHHh
Confidence            99999999999999988876543

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=97.93  E-value=0.00062  Score=43.05  Aligned_cols=98  Identities=16%  Similarity=0.229  Sum_probs=61.9

Q ss_pred             ccceEEEEEeeCCC---CCCeeeEEEEEECCeEEEEccCCCCCCCCCc----cEEEeCCCeEEeecCcccCCCCceEEEE
Q 041556           26 NPERSGWLTKQGDY---IKTWRRRWFILKQGKLFWFKDSHNITPGSTP----RGVIPVGTCLTVRGAEDLLNKPFAFELS   98 (143)
Q Consensus        26 ~~~~~G~L~k~~~~---~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~----~~~i~L~~~~~~~~~~~~~~~~~~f~i~   98 (143)
                      ..++.|.+....+.   .+.-+.|-++|....|.+-+...+......+    +..|.++.....+..+   +.+..|.|.
T Consensus         4 ~Ll~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~---gd~~kF~i~   80 (114)
T cd01232           4 KLLLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVE---GDPCRFALW   80 (114)
T ss_pred             ceEEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEccC---CCCceEEEE
Confidence            34566666655332   2345678888888888887765421111122    2456666653333333   346667664


Q ss_pred             --eCC---eEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           99 --TGE---YTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        99 --~~~---~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                        .+.   ..|.++|.|.++.+.|+..|+.++.
T Consensus        81 ~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~  113 (114)
T cd01232          81 SGDPPISDNRIILKANSQETKQEWVKKIREILQ  113 (114)
T ss_pred             eCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence              333   6899999999999999999988754

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]

Probab=97.93  E-value=1.5e-06  Score=70.01  Aligned_cols=94  Identities=23%  Similarity=0.428  Sum_probs=74.7

Q ss_pred             eEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecC-cccCCCCceEEEEeCCeEEEEE
Q 041556           29 RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA-EDLLNKPFAFELSTGEYTMYFV  107 (143)
Q Consensus        29 ~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~-~~~~~~~~~f~i~~~~~~~~~~  107 (143)
                      ..|+|..+-..-++|++.|.|...-+|++||+-+    +..+..+++|-|+++-.+. ++...+.++|.+.-.+..|+|.
T Consensus       926 Lsg~LlrkfknssgwqkLwvvft~fcl~fyKS~q----D~~~laslPlLgysvs~P~~~d~i~K~~vfkl~fk~hvyffr 1001 (1036)
T KOG3531|consen  926 LSGYLLRKFKNSSGWQKLWVVFTNFCLFFYKSHQ----DSEPLASLPLLGYSVSIPAEPDPIQKDYVFKLKFKSHVYFFR 1001 (1036)
T ss_pred             hhHHHHHHhhccccceeeeeeecceeeEeecccc----cccccccccccccccCCCCCCCCcchhheeeeehhhhHHHHh
Confidence            3455443322334899999999999999999999    8889999999987543332 3345678999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHH
Q 041556          108 ADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       108 a~s~~e~~~Wi~al~~~~~  126 (143)
                      |++.-....|+..|+.+-.
T Consensus      1002 aes~yt~~rw~evi~~a~~ 1020 (1036)
T KOG3531|consen 1002 AESYYTFERWMEVITDAPS 1020 (1036)
T ss_pred             hhhhhhhhhHHHHhhcCCc
Confidence            9999999999999976543

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]

Probab=97.92  E-value=5.7e-05  Score=59.20  Aligned_cols=98  Identities=15%  Similarity=0.332  Sum_probs=67.6

Q ss_pred             cccceEEEEEeeC--CCCCCeeeEEEEEECC--eEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC
Q 041556           25 SNPERSGWLTKQG--DYIKTWRRRWFILKQG--KLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG  100 (143)
Q Consensus        25 ~~~~~~G~L~k~~--~~~~~w~~r~~vL~~~--~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~  100 (143)
                      ..++++|||+.+.  .....|.+.||+....  .+..-.-.+....+..+...+.|..|+..  ..+...+.+||.|...
T Consensus       263 ~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RR--ktdSIdKRFCFDve~~  340 (812)
T KOG1451|consen  263 TPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRR--KTDSIDKRFCFDVEVE  340 (812)
T ss_pred             CCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccC--cccccccceeeeeeec
Confidence            5578999999874  3456999999999754  22222222211223345667888887442  3333467899999876


Q ss_pred             --CeEEEEEcCCHHHHHHHHHHHHHH
Q 041556          101 --EYTMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus       101 --~~~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                        ..+..++|-+++++..|+.||--+
T Consensus       341 erpgviTmQALSE~drrlWmeAMDG~  366 (812)
T KOG1451|consen  341 ERPGVITMQALSEKDRRLWMEAMDGA  366 (812)
T ss_pred             ccCCeeehHhhhhhHHHHHHHHhcCC
Confidence              457889999999999999998544

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=97.90  E-value=8.7e-06  Score=66.01  Aligned_cols=99  Identities=25%  Similarity=0.418  Sum_probs=82.0

Q ss_pred             cccccccceEEEEEeeCCCC-CCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEe
Q 041556           21 IEFWSNPERSGWLTKQGDYI-KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELST   99 (143)
Q Consensus        21 ~~~~~~~~~~G~L~k~~~~~-~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~   99 (143)
                      ..+++.+++.|||.|..... ...++||..+.+..+.||.+.+    ..-+.+.+.+...+.+..     ...+.|++++
T Consensus        81 s~~isp~~~~gwldk~~pqg~~~~qkr~vkf~~~s~~yf~~~k----~py~k~~i~va~is~v~~-----~gd~kfevit  151 (1186)
T KOG1117|consen   81 STPISPVIKSGWLDKLSPQGEYPFQKRWVKFDGSSLEYFLSPK----DPYSKGPIPVAAISAVRN-----FGDNKFEVIT  151 (1186)
T ss_pred             CCccCchhhcchhhccCcCcccccCccceecCCCCccccCCCC----CCCCCCceeeehhhhhhh-----ccCceEEEEe
Confidence            33456688999999976543 4689999999999999999998    677888888887544422     3468999999


Q ss_pred             CCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          100 GEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       100 ~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      ..+.+.|.++++.+...|+..++++....
T Consensus       152 n~r~fvfr~e~~~~r~~w~s~l~s~~~~Q  180 (1186)
T KOG1117|consen  152 NQRTFVFRQESEGERFIWVSPLQSALKEQ  180 (1186)
T ss_pred             cceEEEEecCCcccceeeechhhhcchhh
Confidence            99999999999999999999999887665

>PF15408 PH_7: Pleckstrin homology domain

Probab=97.84  E-value=1.4e-05  Score=47.24  Aligned_cols=89  Identities=15%  Similarity=0.275  Sum_probs=60.9

Q ss_pred             EEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeec-CcccCCC------CceEEEEeCCe
Q 041556           30 SGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG-AEDLLNK------PFAFELSTGEY  102 (143)
Q Consensus        30 ~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~-~~~~~~~------~~~f~i~~~~~  102 (143)
                      +|||+.....  .-++|+.+|++..+.+|..+.     ....+++.|+......+ .......      .++|..+.+++
T Consensus         1 EGYLY~~E~~--si~rRF~~L~~K~~~~~~~KG-----G~~L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~L~~~~~~   73 (104)
T PF15408_consen    1 EGYLYRDEDS--SIQRRFVMLRSKQFNMYEDKG-----GQYLCSFQLSSSVVSHPMVNFSQAVPNLGINAFGFLMYSPSR   73 (104)
T ss_pred             CCeEEEeccc--hHHHHHHhhhhceeEEecccC-----CceeeeeehhhhhhhcccccccccCCCCCeeEEEEEEecCCc
Confidence            5899887543  678999999999999998875     56678888876322111 1111111      23555566654


Q ss_pred             E-EEEEcCCHHHHHHHHHHHHHHH
Q 041556          103 T-MYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus       103 ~-~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      . .-+.|++.+.++.||++|+.-.
T Consensus        74 ~~~~~FA~S~~~~~~Wi~~mN~~s   97 (104)
T PF15408_consen   74 RHVQCFASSKKVCQSWIQVMNSPS   97 (104)
T ss_pred             chhhhhhhHHHHHHHHHHHhcChh
Confidence            4 5677999999999999996543

>PF15406 PH_6: Pleckstrin homology domain

Probab=97.75  E-value=0.00019  Score=44.42  Aligned_cols=64  Identities=16%  Similarity=0.389  Sum_probs=48.2

Q ss_pred             ECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEEEcCCHHHHHHHHHHHH
Q 041556           51 KQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIG  122 (143)
Q Consensus        51 ~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~a~s~~e~~~Wi~al~  122 (143)
                      ++..|.+|....+   ...|.|+|+|...+.++.     ...+.|.+...+....|+|.+..|++.|+.+|.
T Consensus        47 TGKGLLF~~K~~d---ka~P~GiinLadase~~~-----~g~~kF~f~~~G~khtF~A~s~aERD~Wv~~lk  110 (112)
T PF15406_consen   47 TGKGLLFFSKAED---KASPSGIINLADASEPEK-----DGSNKFHFKIKGHKHTFEAASAAERDNWVAQLK  110 (112)
T ss_pred             cCceEEEEecccc---ccCCcceEehhhcccccc-----CCCceEEEEeCCceeeeecCCHHHhccHHHHhh
Confidence            4556666664332   568999999987544322     345777777788999999999999999999985

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=97.68  E-value=0.0004  Score=42.45  Aligned_cols=76  Identities=16%  Similarity=0.382  Sum_probs=50.4

Q ss_pred             CCCeeeEEEEEE----CCeEEEEcc--CCCCCCCCCccEEEeCC------CeEEeecCcccCCCCceEEEEeC-CeEEEE
Q 041556           40 IKTWRRRWFILK----QGKLFWFKD--SHNITPGSTPRGVIPVG------TCLTVRGAEDLLNKPFAFELSTG-EYTMYF  106 (143)
Q Consensus        40 ~~~w~~r~~vL~----~~~l~~y~~--~~~~~~~~~~~~~i~L~------~~~~~~~~~~~~~~~~~f~i~~~-~~~~~~  106 (143)
                      ...|+++-.+|.    +..+.+|..  ++    ...|+-.+...      .++..+.    ..+.+.|.|.-. +..|.|
T Consensus        18 ~~~WqkcRl~L~~~~gg~~le~~~~~pPK----ssrpk~~v~C~~I~EvR~tt~LEm----PD~~nTFvLK~~~~~eyI~   89 (107)
T cd01231          18 GARWQRGRLVLRKAVGGYMLEFYLPLPPK----SSKPKLQVACSSISEVRECTRLEM----PDNLYTFVLKVDDNTDIIF   89 (107)
T ss_pred             ccccceeeEEEEecCCCceEEEEccCCCC----CCCCccccchhhhhhhhhcccccc----cCcccEEEEEecCCceEEE
Confidence            347988888885    345555555  44    34444433322      2322322    356899999754 567999


Q ss_pred             EcCCHHHHHHHHHHHHH
Q 041556          107 VADTEKEKEEWINSIGR  123 (143)
Q Consensus       107 ~a~s~~e~~~Wi~al~~  123 (143)
                      .|.+.++++.|+..|+.
T Consensus        90 Ea~d~~q~~SWla~Ir~  106 (107)
T cd01231          90 EVGDEQQLNSWLAELRY  106 (107)
T ss_pred             EcCCHHHHHHHHHHHhc
Confidence            99999999999999974

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=97.56  E-value=9.8e-05  Score=57.92  Aligned_cols=98  Identities=18%  Similarity=0.358  Sum_probs=73.0

Q ss_pred             ccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc-----cCCCCceEEEEeC
Q 041556           26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED-----LLNKPFAFELSTG  100 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~-----~~~~~~~f~i~~~  100 (143)
                      ...++||+-.....-+--+++|..|....+..|.+..    .......|+|+.+..+.....     ....+|||.|++.
T Consensus       412 t~~kEGWmvHyt~~d~lRkrHYWrldsk~itlfqn~s----~~ryYkeIPLsEIl~v~~~~~~~~vp~~~~phcFEI~T~  487 (888)
T KOG4236|consen  412 TKLKEGWMVHYTSKDNLRKRHYWRLDSKCITLFQNES----TNRYYKEIPLSEILSVSSNNGFSLVPAGTNPHCFEIRTA  487 (888)
T ss_pred             hhhhcceEEEEechhhhhhhhhheeccceeEeeecCC----CceeEEeecHHHhheeeccCCcccCCCCCCCceEEEEee
Confidence            3567888877654334557888899999999999988    677788999988766655442     2356899999998


Q ss_pred             CeEEEEEcCC------------HHHHHHHHHHHHHHHHhh
Q 041556          101 EYTMYFVADT------------EKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       101 ~~~~~~~a~s------------~~e~~~Wi~al~~~~~~~  128 (143)
                      ..+| |-.++            .+.++.|-.||+.+.+.-
T Consensus       488 ~~vy-fVge~p~~~~~~~~g~g~d~a~~w~~ai~~alMpV  526 (888)
T KOG4236|consen  488 TTVY-FVGENPSSTPGGESGVGLDAAQGWETAIQQALMPV  526 (888)
T ss_pred             eEEE-EecCCCCCCccccccccchhhccCchhhhhccccc
Confidence            8544 44555            455889999999887643

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=97.49  E-value=0.0005  Score=56.27  Aligned_cols=93  Identities=23%  Similarity=0.413  Sum_probs=71.0

Q ss_pred             ceEEEEEeeCCC----------CCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEE--eecCccc--CCCCc
Q 041556           28 ERSGWLTKQGDY----------IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLT--VRGAEDL--LNKPF   93 (143)
Q Consensus        28 ~~~G~L~k~~~~----------~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~--~~~~~~~--~~~~~   93 (143)
                      ..+|+|+.....          .-.-.++||||.++.|+||.+.+    ...|.+.|++.....  +...+..  ....+
T Consensus       493 ~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~----S~tP~~lI~~~Eivclav~~pd~~pn~~~~f  568 (1186)
T KOG1117|consen  493 FLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEK----STTPNGLININEIVCLAVHPPDTYPNTGFIF  568 (1186)
T ss_pred             cccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcC----CCCCCceeeccceEEEeecCCCCCCCcCcee
Confidence            356999985321          12467999999999999999998    788999999987433  3222222  23468


Q ss_pred             eEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHH
Q 041556           94 AFELSTG-EYTMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus        94 ~f~i~~~-~~~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                      .|.|..+ ++.+.|-+++.++...|..++.+.
T Consensus       569 ~fE~~l~~er~~~fgle~ad~l~~wt~aiaKh  600 (1186)
T KOG1117|consen  569 IFEIYLPGERVFLFGLETADALRKWTEAIAKH  600 (1186)
T ss_pred             EEEEeecccceEEeecccHHHHHHHHHHHHHh
Confidence            8888766 788999999999999999998755

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=97.42  E-value=0.0016  Score=39.44  Aligned_cols=87  Identities=16%  Similarity=0.215  Sum_probs=57.5

Q ss_pred             cceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCC---CCCCccEEEeCCCeEEeecCcccCCCCceEEE-EeCCe
Q 041556           27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNIT---PGSTPRGVIPVGTCLTVRGAEDLLNKPFAFEL-STGEY  102 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~---~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i-~~~~~  102 (143)
                      .+.+|+|.+.-.+  .-+.|-|+|.++.|.|-+-.....   ..-...-.|+|+..... ..        .|.+ .++++
T Consensus         3 Lv~eg~lvel~~~--~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~-~~--------~~~~~~~~~K   71 (96)
T cd01228           3 LVKDSFLVELVEG--SRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFP-SE--------PFRIHNKNGK   71 (96)
T ss_pred             ccccceeeeehhC--CCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheec-ch--------hhhccccCCc
Confidence            3578898886543  457788888888887765432100   01123347888874322 21        1444 45689


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHH
Q 041556          103 TMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus       103 ~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                      +|.|.|.|..|..+|+.+|+..
T Consensus        72 Sf~~~asS~~Er~eW~~hI~~~   93 (96)
T cd01228          72 SYTFLLSSDYERSEWRESIQKL   93 (96)
T ss_pred             eEEEEecCHHHHHHHHHHHHHH
Confidence            9999999999999999999764

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=96.96  E-value=0.021  Score=37.05  Aligned_cols=83  Identities=16%  Similarity=0.246  Sum_probs=54.3

Q ss_pred             eeeEEEEEECCeEEEEccCCCCCC-CCCc----cEEEeCCCeEEeecCcccCCCCceEEEEeC--CeEEEEEcCCHHHHH
Q 041556           43 WRRRWFILKQGKLFWFKDSHNITP-GSTP----RGVIPVGTCLTVRGAEDLLNKPFAFELSTG--EYTMYFVADTEKEKE  115 (143)
Q Consensus        43 w~~r~~vL~~~~l~~y~~~~~~~~-~~~~----~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~--~~~~~~~a~s~~e~~  115 (143)
                      -+.|..+|.+..+.+.+...+... ...|    +..|.+......+..   .+.+..|.|-..  ...|.++|.|.+..+
T Consensus        29 ~~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v---~gd~~kFeiw~~~~~~~yilqA~t~e~K~  105 (133)
T cd01227          29 PMQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENV---KGDTKKFEIWYNAREEVYILQAPTPEIKA  105 (133)
T ss_pred             CceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccC---CCCccEEEEEeCCCCcEEEEEcCCHHHHH
Confidence            467888999988888876642110 1122    223444433222222   245778887544  467999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 041556          116 EWINSIGRAIVQH  128 (143)
Q Consensus       116 ~Wi~al~~~~~~~  128 (143)
                      .|+..|+..+...
T Consensus       106 ~Wv~~I~~iL~~Q  118 (133)
T cd01227         106 AWVNEIRKVLTSQ  118 (133)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887655

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15404 PH_4: Pleckstrin homology domain

Probab=96.71  E-value=0.023  Score=38.94  Aligned_cols=54  Identities=22%  Similarity=0.346  Sum_probs=37.7

Q ss_pred             eEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCC-------CccEEEeCCCeEEe
Q 041556           29 RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGS-------TPRGVIPVGTCLTV   82 (143)
Q Consensus        29 ~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~-------~~~~~i~L~~~~~~   82 (143)
                      +.|.|+.+......++++++||..+.|..|..-.....+.       ...-+|+|..|.+.
T Consensus         1 ~sG~LY~K~~khs~F~~~~vvL~~G~Li~f~~~~Rs~tG~~~~~~~~~~~~tI~L~dcYvY   61 (185)
T PF15404_consen    1 MSGYLYQKPRKHSTFKKYFVVLIPGFLILFQLFKRSRTGFAKPTVHYEHYLTIPLRDCYVY   61 (185)
T ss_pred             CCceeeecCCCCCCceEEEEEEeCCEEEEEEEEeeccCCcccceEEeEeeeeeccCCceEE
Confidence            4799998887777899999999999999998733110011       11236788877553

>PF15411 PH_10: Pleckstrin homology domain

Probab=96.70  E-value=0.068  Score=33.91  Aligned_cols=93  Identities=16%  Similarity=0.161  Sum_probs=60.4

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCC---------CCc------cEEEeCCCeEEeecCcccC
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPG---------STP------RGVIPVGTCLTVRGAEDLL   89 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~---------~~~------~~~i~L~~~~~~~~~~~~~   89 (143)
                      ......|-+.....  ..|+...+.|....|.+.+........         ...      +|.|.+...+.+....  .
T Consensus         5 G~Lll~g~~~V~k~--~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s--~   80 (116)
T PF15411_consen    5 GELLLHGTLTVGKD--DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSS--K   80 (116)
T ss_pred             cceEEccEEEEEeC--CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccC--C
Confidence            34456677766654  479999999999999999866642110         111      2334444333332222  2


Q ss_pred             CCCceEEEEeC----CeEEEEEcCCHHHHHHHHHHH
Q 041556           90 NKPFAFELSTG----EYTMYFVADTEKEKEEWINSI  121 (143)
Q Consensus        90 ~~~~~f~i~~~----~~~~~~~a~s~~e~~~Wi~al  121 (143)
                      ...+.++|.-.    ...+.|.+.++++++.|-.+|
T Consensus        81 ~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L  116 (116)
T PF15411_consen   81 PGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL  116 (116)
T ss_pred             CCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence            45688888652    357899999999999998875

>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain

Probab=96.55  E-value=0.089  Score=33.13  Aligned_cols=73  Identities=22%  Similarity=0.441  Sum_probs=46.5

Q ss_pred             eeEEEEEE--CCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc-------------CCCCceEEEEeCC----eEE
Q 041556           44 RRRWFILK--QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL-------------LNKPFAFELSTGE----YTM  104 (143)
Q Consensus        44 ~~r~~vL~--~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~-------------~~~~~~f~i~~~~----~~~  104 (143)
                      +++.|.|.  +..++|....+      .....++|+....+......             .....+|.|+...    ..+
T Consensus        22 ~~~~f~ld~~~~~l~W~~~~~------~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIiy~~~~~~k~L   95 (115)
T cd01248          22 RRRLFRLDEKGFFLYWKDEGK------KEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIVYGTDLNLKSL   95 (115)
T ss_pred             eeEEEEEcCCCcEEEEeCCCC------ccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEEECCCCCeeEE
Confidence            56777775  45566654332      14556676654333222110             1345899997653    468


Q ss_pred             EEEcCCHHHHHHHHHHHH
Q 041556          105 YFVADTEKEKEEWINSIG  122 (143)
Q Consensus       105 ~~~a~s~~e~~~Wi~al~  122 (143)
                      .|-|+|.++++.|+..|+
T Consensus        96 ~lVA~s~~~a~~W~~gL~  113 (115)
T cd01248          96 DLVAPSEEEAKTWVSGLR  113 (115)
T ss_pred             EEEECCHHHHHHHHHHHh
Confidence            999999999999999986

Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]

Probab=96.18  E-value=0.032  Score=41.76  Aligned_cols=102  Identities=19%  Similarity=0.308  Sum_probs=66.2

Q ss_pred             ccceEEEEEeeCC---CCCCeeeEEEEEECCeEEEEccCCCCCCC-CCccEEEeCCC--eEEeecCcccCCCCceEEEEe
Q 041556           26 NPERSGWLTKQGD---YIKTWRRRWFILKQGKLFWFKDSHNITPG-STPRGVIPVGT--CLTVRGAEDLLNKPFAFELST   99 (143)
Q Consensus        26 ~~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~y~~~~~~~~~-~~~~~~i~L~~--~~~~~~~~~~~~~~~~f~i~~   99 (143)
                      .+.+-||....-.   ....++.+|..|++..++.|..+.-..-+ ..+..++.+-.  +.++...+-.-.+++||.|..
T Consensus       280 qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kdsd~~D~R~~CF~~qs  359 (505)
T KOG3549|consen  280 QIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKDSDTVDSRQHCFLLQS  359 (505)
T ss_pred             eEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhccccccccccceEEEEc
Confidence            4567899887533   24567899999999999999877520000 00000111100  011111221236899999987


Q ss_pred             C-CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556          100 G-EYTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus       100 ~-~~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      . +...||..+...|+.+|-.++++|+.-
T Consensus       360 ~~ge~~yfsVEl~seLa~wE~sfq~Atf~  388 (505)
T KOG3549|consen  360 SGGEPRYFSVELRSELARWENSFQAATFT  388 (505)
T ss_pred             CCCCceEEEEehhhHHHHHHHHHhhHHhH
Confidence            6 577999999999999999999988654

>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]

Probab=95.98  E-value=0.00048  Score=54.46  Aligned_cols=66  Identities=26%  Similarity=0.547  Sum_probs=48.3

Q ss_pred             cccccceEEEEEeeCC---CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCc
Q 041556           23 FWSNPERSGWLTKQGD---YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPF   93 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~   93 (143)
                      .+.....+||+++...   +...|++-||||.+..|++|.+.+    ...+..+|.|.+.+ +....+..++++
T Consensus       558 ~l~~G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~----~~~~e~~i~l~~~~-i~~a~e~~~~~~  626 (638)
T KOG1738|consen  558 LLGRGDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHR----VRAAESVIKLPLFT-ISVAEEVLGKPE  626 (638)
T ss_pred             HhccchhhccchhhccchHHHHHhhhheeeecCchhhhhhhhh----hhchhheeeccchh-hhhHHHhccCHh
Confidence            3445667889987653   235799999999999999999999    78888999998863 333433323333

>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]

Probab=95.80  E-value=0.01  Score=48.87  Aligned_cols=91  Identities=20%  Similarity=0.298  Sum_probs=63.6

Q ss_pred             ccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEe-CCeEE
Q 041556           26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELST-GEYTM  104 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~-~~~~~  104 (143)
                      ....+|||.+.....++|.+|||++.++.+.||.....  ....+.+.+++... .+...     ....+.+.. ....+
T Consensus        76 ~~~~~g~l~k~~n~~~~~~~r~f~l~~g~ls~~~~~~~--~~~~~~~~~~~~~a-~i~~~-----~~~~~~~~~~~~q~~  147 (799)
T KOG1737|consen   76 GASLEGILLKWRNYSKGPSSRWFVLSGGLLSYYFDNSF--SKTTCGGGINLVTA-WIQNG-----ERMDICSVDGSCQIY  147 (799)
T ss_pred             cccccceeeccccccCCcccceEEecCcceeeeccCCc--cccCCCCccccccc-ccccC-----CCcccchhhcccchh
Confidence            34568999999888889999999999999999987663  13445666666543 22111     122222222 24567


Q ss_pred             EEEcCCHHHHHHHHHHHHHH
Q 041556          105 YFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus       105 ~~~a~s~~e~~~Wi~al~~~  124 (143)
                      +..+.+..+.+.|+.+++.+
T Consensus       148 ~~~~~~~~~~~~~~~~~~l~  167 (799)
T KOG1737|consen  148 LVELSKKLQRQGWLHALELA  167 (799)
T ss_pred             hhhhhHHHhhcchhhhhhhc
Confidence            78888999999999999877

>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A

Probab=95.77  E-value=0.094  Score=34.17  Aligned_cols=96  Identities=17%  Similarity=0.244  Sum_probs=42.8

Q ss_pred             ceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCC--CCCCCccEEEeCCCeEEeecCc-------------------
Q 041556           28 ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNI--TPGSTPRGVIPVGTCLTVRGAE-------------------   86 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~--~~~~~~~~~i~L~~~~~~~~~~-------------------   86 (143)
                      ++.|-|.+++.....|....++|.++.|.+-+.+...  ..-...+..|+|+-. .++..+                   
T Consensus         2 i~~G~L~Rk~~~~~~~~di~~~LFDh~Lll~K~k~~~k~e~ykV~r~PIPLeLL-~l~~~~d~~~~~~~~~r~s~s~~~~   80 (135)
T PF15405_consen    2 IYKGDLKRKGDNSFNWVDIHVYLFDHYLLLTKPKKVNKREQYKVYRRPIPLELL-VLESMDDPPPQRSIAKRPSSSLISS   80 (135)
T ss_dssp             ---------------S-EEEEEEESSEEEEEEEEEETTEEEEEESS--EEGGG--EEEE--TTTS---------S-----
T ss_pred             ccccccccccccccccceeEEEeeccEEEEEEEEecCCeEEEEEEECCcCHHHe-eeecccCCCcccCcccccccCccCC
Confidence            5788888888766678899999999988887765310  001112234444432 111100                   


Q ss_pred             -------------ccCCCCceEEEEeC---CeEEEEEcCCHHHHHHHHHHHHHH
Q 041556           87 -------------DLLNKPFAFELSTG---EYTMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus        87 -------------~~~~~~~~f~i~~~---~~~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                                   ......+.|.+..-   +..+.|+|+|..+++.|+.+|.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q  134 (135)
T PF15405_consen   81 SSSNSNSPSNPNSSDSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ  134 (135)
T ss_dssp             --SHHHH--------TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred             ccCCCCccceeeeccCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence                         00122355555543   345789999999999999999765

>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]

Probab=95.63  E-value=0.00035  Score=59.32  Aligned_cols=103  Identities=17%  Similarity=0.278  Sum_probs=73.6

Q ss_pred             cccccceEEEEEee----------CCCCCCeeeEEEEEECCeEEEEccCCCCC----------CCCCccEEEeCCCeEEe
Q 041556           23 FWSNPERSGWLTKQ----------GDYIKTWRRRWFILKQGKLFWFKDSHNIT----------PGSTPRGVIPVGTCLTV   82 (143)
Q Consensus        23 ~~~~~~~~G~L~k~----------~~~~~~w~~r~~vL~~~~l~~y~~~~~~~----------~~~~~~~~i~L~~~~~~   82 (143)
                      .+.+.-++|||+.+          |.....|+..|-+|.++.++.|++..+-.          .....-..+.+.+|. +
T Consensus       919 ~Fsd~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscl-t  997 (1973)
T KOG4407|consen  919 LFSDSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCL-T  997 (1973)
T ss_pred             hhhhhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccch-h
Confidence            45678899999974          23456899999999999999999877400          001122245566652 2


Q ss_pred             ecCcccCCCCceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           83 RGAEDLLNKPFAFELSTGE-YTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        83 ~~~~~~~~~~~~f~i~~~~-~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      +......++.+.|++++.. ..+.|++++.++|-.|+...++...
T Consensus       998 dI~ysetkrn~vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~St~ 1042 (1973)
T KOG4407|consen  998 DIQYSETKRNQVFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSSTT 1042 (1973)
T ss_pred             hhhhhhhhhhhHHHhHHHHHHhHhhccCccccccchhhhhhhccc
Confidence            2222234778999998876 6789999999999999999865544

>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]

Probab=95.60  E-value=0.013  Score=46.23  Aligned_cols=85  Identities=14%  Similarity=0.158  Sum_probs=65.4

Q ss_pred             CCCeeeEEEEEE---CCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc-ccCCCCceEEEEeCCeEEEEEcCCHHHHH
Q 041556           40 IKTWRRRWFILK---QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE-DLLNKPFAFELSTGEYTMYFVADTEKEKE  115 (143)
Q Consensus        40 ~~~w~~r~~vL~---~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~-~~~~~~~~f~i~~~~~~~~~~a~s~~e~~  115 (143)
                      ...|...|++.-   +-.++.|..++    +......|+|.+|.+..+.. ......|+|.++.....++|.++|++-.+
T Consensus       510 ~~~g~~a~~~vP~~d~~~~~~Yg~~q----Dv~a~~~iPl~~~~v~~pe~~~~~D~~~~~k~~~s~~~~~~~a~~~q~qq  585 (623)
T KOG4424|consen  510 GKTGILAWSVVPKSDPLVDYSYGSPQ----DVRAQATIPLPGVEVTIPEFVRREDLFHVFKLVQSHLSWHLAADDEQLQQ  585 (623)
T ss_pred             CccceeeeeeccCCCCccccccCCcc----ccccccccccCccccCCCcccccchhcchhhhhhhcceeeeccCCHHHHH
Confidence            457999999884   45888899988    78889999999984432211 11234677777777779999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 041556          116 EWINSIGRAIVQH  128 (143)
Q Consensus       116 ~Wi~al~~~~~~~  128 (143)
                      .|+..|..|+..-
T Consensus       586 ~wl~~l~~A~~~d  598 (623)
T KOG4424|consen  586 RWLEVLLLAVSGD  598 (623)
T ss_pred             HHHHHHHhhhccc
Confidence            9999999887653

>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]

Probab=95.42  E-value=0.04  Score=43.94  Aligned_cols=81  Identities=17%  Similarity=0.343  Sum_probs=49.2

Q ss_pred             CeeeEEEEEECCeEEEEccCCCCC---CCCCccEEEeCCCeEE--eecC--cccCCCCceEEEEeC------CeEEEEEc
Q 041556           42 TWRRRWFILKQGKLFWFKDSHNIT---PGSTPRGVIPVGTCLT--VRGA--EDLLNKPFAFELSTG------EYTMYFVA  108 (143)
Q Consensus        42 ~w~~r~~vL~~~~l~~y~~~~~~~---~~~~~~~~i~L~~~~~--~~~~--~~~~~~~~~f~i~~~------~~~~~~~a  108 (143)
                      ..+..|++|.+..|.+-+.+..-.   .+-.+...+.+..|..  ....  ......+|.|.+.--      .-.+.|+|
T Consensus       498 ~~~~vylfLFnD~Llitk~k~~~~f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~e~lL~a  577 (695)
T KOG3523|consen  498 LSKTVYLFLFNDLLLITKKKSEGSFQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQTELLLSA  577 (695)
T ss_pred             ccceeeeeeecceeeEeeecCCCceEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCceeeeecC
Confidence            467899999999998887765200   0111222333333211  0000  011245688988632      23588999


Q ss_pred             CCHHHHHHHHHHHH
Q 041556          109 DTEKEKEEWINSIG  122 (143)
Q Consensus       109 ~s~~e~~~Wi~al~  122 (143)
                      +|+.|++.||.||.
T Consensus       578 ~s~Sd~~RWi~Al~  591 (695)
T KOG3523|consen  578 ESQSDRQRWISALR  591 (695)
T ss_pred             CchHHHHHHHHhcC
Confidence            99999999999995

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=95.22  E-value=5.9e-05  Score=56.54  Aligned_cols=81  Identities=21%  Similarity=0.554  Sum_probs=64.1

Q ss_pred             CCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEEEcCCHHHHHHHHHH
Q 041556           41 KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINS  120 (143)
Q Consensus        41 ~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~a~s~~e~~~Wi~a  120 (143)
                      ..|++.|||+.+..+.||...... ......+.++|..|+.+....  ..+.+.|+|-+.+..|.|.+.+..-...|+.|
T Consensus        33 ~~~~k~~~~~~~~~~~~~~d~~A~-~~~~L~~~~~LR~C~~v~e~a--~q~nY~~~i~~~~~~~tL~~~~s~Ir~~~~~A  109 (593)
T KOG4807|consen   33 SQWKKHWFVLTDSSLKYYRDSTAE-EADELDGEIDLRSCTDVTEYA--VQRNYGFQIHTKDAVYTLSAMTSGIRRNWIEA  109 (593)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH-hcccCCccccHHHHHHHHHHH--HHhccceeecccchhhhhHHHHHHHHHHHHHH
Confidence            369999999999999999876521 123356788999886543322  25789999999999999999999999999999


Q ss_pred             HHHH
Q 041556          121 IGRA  124 (143)
Q Consensus       121 l~~~  124 (143)
                      ++..
T Consensus       110 ~~kT  113 (593)
T KOG4807|consen  110 LRKT  113 (593)
T ss_pred             HHhc
Confidence            9854

>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.05  E-value=0.0038  Score=49.00  Aligned_cols=83  Identities=14%  Similarity=0.150  Sum_probs=53.5

Q ss_pred             CCCeeeEEEEEE----CCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC---CeEEEEEcCCHH
Q 041556           40 IKTWRRRWFILK----QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG---EYTMYFVADTEK  112 (143)
Q Consensus        40 ~~~w~~r~~vL~----~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~---~~~~~~~a~s~~  112 (143)
                      .+..++.||...    ...+.+|++.      ..|...|++.||.+.+..+....+-+.|-|...   ...+++.|+++.
T Consensus       372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~------~ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~  445 (664)
T KOG3727|consen  372 LKGYKRYFFTFRDLHLSLYKSSEDSR------GAPAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQ  445 (664)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhHhhhc------CCCCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHH
Confidence            344555555444    4445555553      457778888888666555543333334444332   456899999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 041556          113 EKEEWINSIGRAIVQH  128 (143)
Q Consensus       113 e~~~Wi~al~~~~~~~  128 (143)
                      +...|++|.+-|....
T Consensus       446 QYA~WMAaCrLASKGk  461 (664)
T KOG3727|consen  446 QYARWMAACRLASKGK  461 (664)
T ss_pred             HHHHHHHHhhHhhcCC
Confidence            9999999998776554

>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]

Probab=94.26  E-value=0.024  Score=45.87  Aligned_cols=93  Identities=5%  Similarity=-0.189  Sum_probs=66.9

Q ss_pred             cceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEE
Q 041556           27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYF  106 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~  106 (143)
                      +.+-|+|.++...++.|+.+||++.++.+.+|+++-    +....+.+.-.+| .+....    ..-.-++.....++++
T Consensus       259 ~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~----d~~s~~~~~~~~~-s~~fql----i~~t~~~~~~~~s~~l  329 (936)
T KOG0248|consen  259 TSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKI----DIRSVTKLEQQGA-AYAFQL----ITSTDKMNFMTESERT  329 (936)
T ss_pred             hHHHHHHHhHheeeccceEEEEEcCCCccccccCcc----cccccceeeccch-hHHhhh----hhhceeEEEeccChhh
Confidence            356688888888889999999999999999999987    4444444433344 222222    2344555556677888


Q ss_pred             EcCCHHHHHHHHHHHHHHHHhh
Q 041556          107 VADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       107 ~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      -++...-++.||.+++......
T Consensus       330 t~dw~~iL~~~iKv~~~~~~a~  351 (936)
T KOG0248|consen  330 THDWVTILSAAIKATTLREMAS  351 (936)
T ss_pred             hhhhHHHHHHHHHHHhccchhh
Confidence            8999999999999998765443

>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]

Probab=93.97  E-value=0.041  Score=45.43  Aligned_cols=99  Identities=25%  Similarity=0.373  Sum_probs=66.0

Q ss_pred             cceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEE
Q 041556           27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYF  106 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~  106 (143)
                      .+..|.|.|...  ++-++|.|+|....|.|-...-+........+-+++.  ..++.++....-+|+|.|....+..+.
T Consensus       750 ~ir~g~llK~sk--kgLqqrmfFLfsdillytsk~~~~~~~fri~g~lP~~--l~~en~en~~s~p~~~ti~~~qk~i~v  825 (1036)
T KOG3531|consen  750 FIRSGCLLKLSK--KGLQQRMFFLFSDILLYTSKGPDVQKCFRINGDLPLT--LTMENSENEWSVPHCFTISGAQKQIYV  825 (1036)
T ss_pred             hhhcCCchhhcc--ccchhhhhhhhhhhheeccCCCChhheeEeccCCceE--eeeecccccccCCceEEEeccceEEEE
Confidence            456677766543  3567788888777666533322111122233344444  234455555577999999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHHHHhhc
Q 041556          107 VADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       107 ~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      +|.+..+.+.|..-++.++....
T Consensus       826 sast~~~sk~~~~~r~~~i~~~~  848 (1036)
T KOG3531|consen  826 SASTRRESKKWEFDRRKAIDLAP  848 (1036)
T ss_pred             eccchhhhhhhhhccchhhhhcc
Confidence            99999999999998888875543

>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain

Probab=93.66  E-value=1.3  Score=29.11  Aligned_cols=87  Identities=15%  Similarity=0.242  Sum_probs=53.2

Q ss_pred             CeeeEEEEEECCeEEEEccCCCCC-C-----------CCC---ccEEEeCCCeEEeecCcccCCCCceEEEEe-------
Q 041556           42 TWRRRWFILKQGKLFWFKDSHNIT-P-----------GST---PRGVIPVGTCLTVRGAEDLLNKPFAFELST-------   99 (143)
Q Consensus        42 ~w~~r~~vL~~~~l~~y~~~~~~~-~-----------~~~---~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~-------   99 (143)
                      .-.---||++.-.+..|+....-. +           +.+   -+.+|++....+-..........+.+.|+.       
T Consensus        48 e~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~ad~e~~~vwEliH~kSe~eg  127 (160)
T cd01255          48 ELELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSAADMESNFLWELIHLKSELEG  127 (160)
T ss_pred             CceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCCcCcccceEEEEEeecccccC
Confidence            334456788888888887654210 0           001   112455554322222222234456777763       


Q ss_pred             -CCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          100 -GEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       100 -~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                       ++++|.|+|.+.+....-+..|++.+...
T Consensus       128 RpE~vfqLCcS~~E~k~~flK~Irsilre~  157 (160)
T cd01255         128 RPEKVFVLCCSTAESRNAFLKTIRSILRES  157 (160)
T ss_pred             CCcceEEEecCCHHHHHHHHHHHHHHHHHH
Confidence             35789999999999999999999887654

TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.

>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function

Probab=93.42  E-value=0.33  Score=30.40  Aligned_cols=38  Identities=24%  Similarity=0.421  Sum_probs=33.7

Q ss_pred             CCceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           91 KPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        91 ~~~~f~i~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      ..+.|-|.|..+...|.|+|+.+.+.|+.+|+..+...
T Consensus        69 ~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~~~  106 (110)
T PF08458_consen   69 ERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLSQV  106 (110)
T ss_pred             eEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHHHh
Confidence            45789999999999999999999999999999877654

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=93.13  E-value=0.24  Score=41.27  Aligned_cols=62  Identities=27%  Similarity=0.426  Sum_probs=46.2

Q ss_pred             CCCccEEEeCCCeEEeecCcccCCCCceEEEEeC---CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           67 GSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG---EYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        67 ~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~---~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +....++.++..+.++..+.....+.+.|.|...   ...+.|.|++++++.+|+.+|+.+....
T Consensus       849 Gtl~rgi~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a  913 (1267)
T KOG1264|consen  849 GTLCRGILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA  913 (1267)
T ss_pred             chhhhccccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence            3445567777777667666665567788888643   4568899999999999999999875543

>KOG0517 consensus Beta-spectrin [Cytoskeleton]

Probab=92.11  E-value=0.0024  Score=56.11  Aligned_cols=98  Identities=18%  Similarity=0.335  Sum_probs=67.6

Q ss_pred             ceEEEEEeeC--------CCCCCeeeEEEEEECCeEEEEccCCCCCCC--CCccE--EEeCCCeEEeecCcccCCCCceE
Q 041556           28 ERSGWLTKQG--------DYIKTWRRRWFILKQGKLFWFKDSHNITPG--STPRG--VIPVGTCLTVRGAEDLLNKPFAF   95 (143)
Q Consensus        28 ~~~G~L~k~~--------~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~--~~~~~--~i~L~~~~~~~~~~~~~~~~~~f   95 (143)
                      .++|+|+.+-        ...+.|...||++..+.+.+|++.+.....  ....+  .+.+..+ .+....++.++++.|
T Consensus      2300 ~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a-~i~~a~dy~kkk~v~ 2378 (2473)
T KOG0517|consen 2300 QLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMA-AIEVASDYHKKKHVF 2378 (2473)
T ss_pred             HHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchh-HHHHHHHHHHHhHhh
Confidence            5788886531        145689999999999999999988731000  01111  2223332 233344556788999


Q ss_pred             EEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           96 ELSTG-EYTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        96 ~i~~~-~~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      .+..+ +..|.|+|.++++|..|+.++....+
T Consensus      2379 ~l~~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2379 LLQLPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred             hhcCCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            99755 67789999999999999999987775

>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]

Probab=91.49  E-value=0.18  Score=39.03  Aligned_cols=101  Identities=16%  Similarity=0.124  Sum_probs=58.9

Q ss_pred             cccceEEEEEeeCCC--CCCeeeEEEEEECC------eEEEEccCCC---CCCCCCccEEEeCCCeEEeecCcccCCCCc
Q 041556           25 SNPERSGWLTKQGDY--IKTWRRRWFILKQG------KLFWFKDSHN---ITPGSTPRGVIPVGTCLTVRGAEDLLNKPF   93 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~--~~~w~~r~~vL~~~------~l~~y~~~~~---~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~   93 (143)
                      +...+.|++......  .+.|.++|++|..+      .+..|..++.   .......+.++.|..+..++........+-
T Consensus         6 ~~~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~~~~~~~~rR~~~ls~~~S~e~~~~~~~~~~   85 (429)
T KOG4047|consen    6 SCLVKDGVPDNHRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRESVRWPYRCLRRYGYLSNLFSFESGRRCQTGPG   85 (429)
T ss_pred             CcccccCccchhhhhhccccccccceeeeccccccchhhhhhhccCCcccccchhcceeeEeeccceeeecccccccCCC
Confidence            556788888876443  35899999999754      2233332221   111112235777888777776654333332


Q ss_pred             eEEEE--eCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556           94 AFELS--TGEYTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        94 ~f~i~--~~~~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      .+..+  +...  +|-+.+.-+...|+++|..-...
T Consensus        86 i~~~f~~~a~e--~~~~~q~l~~~~w~~~i~~~~~~  119 (429)
T KOG4047|consen   86 ITAFFCDRAEE--LFNMLQDLMQANWINAIEEPAIP  119 (429)
T ss_pred             ceEEEecchHH--HHHHHHHHHhhhhhhhhhhcccc
Confidence            22222  2222  66677777888899999765443

>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]

Probab=91.12  E-value=0.17  Score=38.48  Aligned_cols=99  Identities=23%  Similarity=0.405  Sum_probs=66.6

Q ss_pred             ccceEEEEEee--CCCCCCeeeEEEEEECCeEEEEccCCC-CCCCCCccEEEeCCCeEEeecCcccCC----CCceEEEE
Q 041556           26 NPERSGWLTKQ--GDYIKTWRRRWFILKQGKLFWFKDSHN-ITPGSTPRGVIPVGTCLTVRGAEDLLN----KPFAFELS   98 (143)
Q Consensus        26 ~~~~~G~L~k~--~~~~~~w~~r~~vL~~~~l~~y~~~~~-~~~~~~~~~~i~L~~~~~~~~~~~~~~----~~~~f~i~   98 (143)
                      ++..-|||.++  +++...|+..+..|+...|.+|.+-.. ...=..|..+.+|-....+........    -...|.++
T Consensus       291 evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~R  370 (506)
T KOG3551|consen  291 EVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLSFATR  370 (506)
T ss_pred             chhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHHHhcChhhhhhhhhhhheecCCCCCCCcCCceEEEEEe
Confidence            45567999886  345568999999999999999987542 111234566677655333433332211    12467776


Q ss_pred             eCC----eEEEEEcCCHHHHHHHHHHHHHH
Q 041556           99 TGE----YTMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus        99 ~~~----~~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                      +..    .++.|..++-.|+..|..+|-.-
T Consensus       371 tGTrqGV~thlfrvEThrdLa~WtRslVqG  400 (506)
T KOG3551|consen  371 TGTRQGVETHLFRVETHRELAAWTRSLVQG  400 (506)
T ss_pred             cccccceEEEEEEeccHHHHHHHHHHHHHH
Confidence            653    56899999999999999988543

>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]

Probab=90.77  E-value=0.45  Score=37.42  Aligned_cols=80  Identities=21%  Similarity=0.374  Sum_probs=55.7

Q ss_pred             CeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC-eEEEEEcCCHHHHHHHHHH
Q 041556           42 TWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE-YTMYFVADTEKEKEEWINS  120 (143)
Q Consensus        42 ~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~-~~~~~~a~s~~e~~~Wi~a  120 (143)
                      .-+.||++|....|.++.-... ....-..|-+++.|. +|...++.....+.|.|.... ......|+.+.+++.|+.+
T Consensus       324 d~~dRy~~LF~~~llflsvs~r-Ms~fIyegKlp~tG~-iV~klEdte~~~nafeis~~ti~rIv~~c~~~~~l~~wve~  401 (661)
T KOG2070|consen  324 DEKDRYLLLFPNVLLFLSVSPR-MSGFIYEGKLPTTGM-IVTKLEDTENHRNAFEISGSTIERIVVSCNNQQDLQEWVEH  401 (661)
T ss_pred             chhhheeeeccceeeeeEeccc-cchhhhcccccccee-EEeehhhhhcccccccccccchhheeeccCChHHHHHHHHH
Confidence            3469999999988877765441 112334557888886 455555444667888886552 2355679999999999999


Q ss_pred             HHH
Q 041556          121 IGR  123 (143)
Q Consensus       121 l~~  123 (143)
                      ++.
T Consensus       402 ln~  404 (661)
T KOG2070|consen  402 LNK  404 (661)
T ss_pred             hhh
Confidence            975

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=89.98  E-value=0.32  Score=38.93  Aligned_cols=35  Identities=29%  Similarity=0.536  Sum_probs=30.6

Q ss_pred             eEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           94 AFELSTG-EYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        94 ~f~i~~~-~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +|.|++. +..+.|.|-+.+|++.|+.||+..|...
T Consensus       447 ~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaS  482 (749)
T KOG0705|consen  447 CFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILAS  482 (749)
T ss_pred             eEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHH
Confidence            8888765 7889999999999999999999887654

>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]

Probab=89.64  E-value=1.4  Score=35.53  Aligned_cols=105  Identities=17%  Similarity=0.186  Sum_probs=69.8

Q ss_pred             cccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc---cC-----CCCce
Q 041556           23 FWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED---LL-----NKPFA   94 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~---~~-----~~~~~   94 (143)
                      .+.-|...|-|.......+.=+.||.+|.+..+..-+...+   .-.....+.|......+.+.+   ..     -..+.
T Consensus       402 ~~GRpkiDGElki~s~~~~tkqdRyiFLfDkvviVCKrkG~---sy~lke~i~l~~y~m~d~~~~~kd~kk~~~~~ws~~  478 (865)
T KOG2996|consen  402 DFGRPKIDGELKITSTQAHTKQDRYIFLFDKVVIVCKRKGD---SYELKEIIYLNAYKMSDDPIDDKDNKKVSTITWSYG  478 (865)
T ss_pred             HhCCCCcCceEEEeehhcCCccceEEeEecceEEEeeccCc---chhHHHHHHHHhhccccCCCCchhhhhccceeeeee
Confidence            34556677888777655566789999999999988887662   223344555554322221111   11     13577


Q ss_pred             EEEEeC--CeEEEEEcCCHHHHHHHHHHHHHHHHhhcC
Q 041556           95 FELSTG--EYTMYFVADTEKEKEEWINSIGRAIVQHSR  130 (143)
Q Consensus        95 f~i~~~--~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~  130 (143)
                      |-|+..  ...+.|++.+++-.+.|+.++..++...++
T Consensus       479 f~lI~tqg~ngl~fy~Kte~~kkkWmeqfema~SNi~P  516 (865)
T KOG2996|consen  479 FYLIHTQGRNGLEFYCKTEDLKKKWMEQFEMAKSNISP  516 (865)
T ss_pred             EEEEEEcCCcceEEEEecHHHHHHHHHHHHHHHhcCCc
Confidence            877643  345889999999999999999988776543

>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]

Probab=85.32  E-value=0.018  Score=47.26  Aligned_cols=94  Identities=15%  Similarity=0.142  Sum_probs=60.0

Q ss_pred             eEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEEEc
Q 041556           29 RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVA  108 (143)
Q Consensus        29 ~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~a  108 (143)
                      ..|...++..-...|+.+++.+++..-.+|....    .......+.+....+.+...  ..-++.|.|.++.+...+++
T Consensus         4 ~rgl~~~~~ne~Ea~k~r~~~~k~~~~~~vakTa----~g~~~~~~d~t~a~~~eSs~--~n~~~sf~vi~~~rk~r~~a   77 (1099)
T KOG1170|consen    4 TRGLDNDVDNEREAWKQSILRAKDRMPEKVAKTA----SGPLFALLDLTSAHVAESST--NNPRPSFCVITPVRKHRLCA   77 (1099)
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHHHHHHhcc----CCccHHHHhccccccccccc--CCCCCCeeEecccHHhhhhc
Confidence            4455555544445688888888877643433322    11112233444333333332  24578888999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhh
Q 041556          109 DTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       109 ~s~~e~~~Wi~al~~~~~~~  128 (143)
                      ++..+|..|+.+++......
T Consensus        78 dn~ke~e~wi~~~kt~q~~e   97 (1099)
T KOG1170|consen   78 DNRKEMEKWINQSKTPQHLE   97 (1099)
T ss_pred             cchhHHHHhhccccchhhcc
Confidence            99999999999998776543

>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E

Probab=84.51  E-value=6.8  Score=23.63  Aligned_cols=81  Identities=17%  Similarity=0.204  Sum_probs=48.6

Q ss_pred             eeEEEEEE---C--CeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEEEcCCHHHHHHHH
Q 041556           44 RRRWFILK---Q--GKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWI  118 (143)
Q Consensus        44 ~~r~~vL~---~--~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~a~s~~e~~~Wi  118 (143)
                      +.||.+|.   .  ..+.+++-+......-......+|.....|+...+. .....|.|.. ++.|+..|.+..|....|
T Consensus         4 K~r~Lclsv~~~~~~~v~l~k~K~~~~g~f~i~ktW~L~eL~~I~~~~~~-~~~~~F~l~~-~k~y~W~a~s~~Ek~~Fi   81 (91)
T PF15277_consen    4 KPRYLCLSVTNSPRIQVRLHKVKQNDNGSFQIGKTWDLDELKAIDGINPD-KDTPEFDLTF-DKPYYWEASSAKEKNTFI   81 (91)
T ss_dssp             EEEEEEEEEETTETTEEEEEEEEE-CCS-EEEEEEEEGGG--EEEE-SSS---TTEEEEES-SSEEEEEESSHHHHHHHH
T ss_pred             ccEEEEEEEecCCceEEEEEEEEecCCCcEEEeeEEehhhceeeeeecCC-CCCcCEEEEE-CCCcEEEeCCHHHHHHHH
Confidence            45665553   2  236666655432222223447788877666655431 2346888876 449999999999999999


Q ss_pred             HHHHHHHH
Q 041556          119 NSIGRAIV  126 (143)
Q Consensus       119 ~al~~~~~  126 (143)
                      ..|-+...
T Consensus        82 ~~L~k~~~   89 (91)
T PF15277_consen   82 RSLWKLYQ   89 (91)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99876543

>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]

Probab=81.69  E-value=2.4  Score=32.58  Aligned_cols=38  Identities=16%  Similarity=0.324  Sum_probs=31.4

Q ss_pred             CCceEEEEeCC--eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           91 KPFAFELSTGE--YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        91 ~~~~f~i~~~~--~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      ...+|.|..++  .++.+.|.+..+++.|..||+.+++..
T Consensus       235 EnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~l  274 (506)
T KOG3551|consen  235 ENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNTL  274 (506)
T ss_pred             ccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhhH
Confidence            35688888774  467899999999999999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
2r0d_A	347	Crystal Structure Of Autoinhibited Form Of Grp1 Arf		1e-12
1fhw_A	129	Structure Of The Pleckstrin Homology Domain From Gr		2e-12
2r09_A	347	Crystal Structure Of Autoinhibited Form Of Grp1 Arf		3e-12
1fhx_A	129	Structure Of The Pleckstrin Homology Domain From Gr		4e-12
1fgy_A	127	Grp1 Ph Domain With Ins(1,3,4,5)p4 Length = 127		3e-11
1u2b_A	138	Triglycine Variant Of The Grp1 Pleckstrin Homology		7e-11
1u27_A	129	Triglycine Variant Of The Arno Pleckstrin Homology		1e-10
1eaz_A	125	Crystal Structure Of The Phosphoinositol (3,4)-Bisp		1e-08
2dkp_A	128	Solution Structure Of The Ph Domain Of Pleckstrin H		7e-08
1v89_A	118	Solution Structure Of The Pleckstrin Homology Domai		2e-07
1fao_A	126	Structure Of The Pleckstrin Homology Domain From Da		3e-07
2yry_A	122	Solution Structure Of The Ph Domain Of Pleckstrin H		7e-07
2d9y_A	117	Solution Structure Of The Ph Domain Of Pepp-3 From		7e-07
1pls_A	113	Solution Structure Of A Pleckstrin Homology Domain		8e-07
2x18_A	119	The Crystal Structure Of The Ph Domain Of Human Akt		3e-06
1p6s_A	111	Solution Structure Of The Pleckstrin Homology Domai		3e-06
1unp_A	121	Crystal Structure Of The Pleckstrin Homology Domain		4e-06
2uvm_A	123	Structure Of Pkbalpha Ph Domain In Complex With A N		4e-06
1unr_A	125	Crystal Structure Of The Ph Domain Of Pkb Alpha In		4e-06
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		5e-06
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		5e-06
1h10_A	125	High Resolution Structure Of The Pleckstrin Homolog		7e-06
2uzs_A	125	A Transforming Mutation In The Pleckstrin Homology		7e-06
2uzr_A	124	A Transforming Mutation In The Pleckstrin Homology		7e-06
1upq_A	123	Crystal Structure Of The Pleckstrin Homology (Ph) D		8e-05
3tfm_A	228	Myosin X Ph1n-Ph2-Ph1c Tandem Length = 228		1e-04
2rsg_A	94	Solution Structure Of The Cert Ph Domain Length = 9		2e-04
1xx0_A	127	Structure Of The C-Terminal Ph Domain Of Human Plec		3e-04
2kcj_A	108	Solution Structure Of Fapp1 Ph Domain Length = 108		3e-04
2i5c_A	109	Crystal Structure Of The C-Terminal Ph Domain Of Pl		4e-04
1zm0_A	114	Crystal Structure Of The Carboxyl Terminal Ph Domai		4e-04
1x05_A	129	Solution Structure Of The C-Terminal Ph Domain Of H		5e-04
3rcp_A	103	Crystal Structure Of The Fapp1 Pleckstrin Homology		7e-04
1wg7_A	150	Solution Structure Of Pleckstrin Homology Domain Fr		7e-04

>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 62/122 (50%), Gaps = 28/122 (22%)
Query: 26  NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
           NP+R GWL K G  +KTW+RRWFIL    L++F+     T    PRG+IP+   L++R  
Sbjct: 212 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREV 266
Query: 86  EDLLNKPFAFELST---------------------GEYTMYFV-ADTEKEKEEWINSIGR 123
           ED   KP  FEL                       G + +Y + A + +EKEEW+ SI  
Sbjct: 267 ED-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKA 325
Query: 124 AI 125
           +I
Sbjct: 326 SI 327

>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In Complex With Inositol(1,3,4,5,6)pentakisphosphate Length = 129

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 62/122 (50%), Gaps = 28/122 (22%)
Query: 26  NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
           NP+R GWL K G  +KTW+RRWFIL    L++F+     T    PRG+IP+   L++R  
Sbjct: 2   NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREV 56
Query: 86  EDLLNKPFAFELST---------------------GEYTMYFV-ADTEKEKEEWINSIGR 123
           ED   KP  FEL                       G + +Y + A + +EKEEW+ SI  
Sbjct: 57  ED-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKA 115
Query: 124 AI 125
           +I
Sbjct: 116 SI 117

>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 61/122 (50%), Gaps = 28/122 (22%)
Query: 26  NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
           NP+R GWL K G  +KTW+RRWFIL    L++F+     T    PRG+IP+   L++R  
Sbjct: 212 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREV 266
Query: 86  EDLLNKPFAFELST---------------------GEYTMYFV-ADTEKEKEEWINSIGR 123
           ED   KP  FEL                       G + +Y + A + +EKEEW  SI  
Sbjct: 267 ED-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSIKA 325
Query: 124 AI 125
           +I
Sbjct: 326 SI 327

>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In Complex With Inositol 1,3,4,5-Tetrakisphosphate Length = 129

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 61/122 (50%), Gaps = 28/122 (22%)
Query: 26  NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
           NP+R GWL K G  +KTW+RRWFIL    L++F+     T    PRG+IP+   L++R  
Sbjct: 2   NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREV 56
Query: 86  EDLLNKPFAFELST---------------------GEYTMYFV-ADTEKEKEEWINSIGR 123
           ED   KP  FEL                       G + +Y + A + +EKEEW  SI  
Sbjct: 57  ED-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSIKA 115
Query: 124 AI 125
           +I
Sbjct: 116 SI 117

>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4 Length = 127

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 28/122 (22%)
Query: 26  NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
           NP+R GWL K G  +KTW+RRWFIL    L++F+     T    PRG+IP+   L++R  
Sbjct: 4   NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREV 58
Query: 86  EDLLNKPFAFELST---------------------GEYTMYFV-ADTEKEKEEWINSIGR 123
            D   KP  FEL                       G + +Y + A + +EKEEW  SI  
Sbjct: 59  LD-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSIKA 117
Query: 124 AI 125
           +I
Sbjct: 118 SI 119

>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain Unliganded Length = 138

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 29/123 (23%)
Query: 26  NPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           NP+R GWL K G   +KTW+RRWFIL    L++F+     T    PRG+IP+   L++R 
Sbjct: 14  NPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIRE 68
Query: 85  AEDLLNKPFAFELST---------------------GEYTMYFV-ADTEKEKEEWINSIG 122
            ED   KP  FEL                       G + +Y + A + +EKEEW+ SI 
Sbjct: 69  VED-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIK 127
Query: 123 RAI 125
            +I
Sbjct: 128 ASI 130

>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain In Complex With Ins(1,3,4,5)p4 Length = 129

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 29/123 (23%)
Query: 26  NPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           +P+R GWL K G   +KTW+RRWFIL    L++F+     T    PRG+IP+   L++R 
Sbjct: 10  SPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIRE 64
Query: 85  AEDLLNKPFAFELST---------------------GEYTMYFV-ADTEKEKEEWINSIG 122
            +D   KP  FEL                       G + +Y + A T++EK+EWI SI 
Sbjct: 65  VDD-PRKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSIQ 123
Query: 123 RAI 125
            A+
Sbjct: 124 AAV 126

>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol (3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human Length = 125

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE-- 86
           ++G+  KQG  +K W+RR+F L +  + +FK          P  VIP+     V+  +  
Sbjct: 16  KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELE----KEPLRVIPLKEVHKVQECKQS 71
Query: 87  DLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIV 126
           D++ +   FE+ T   T Y  AD+ +E   WI ++  AIV
Sbjct: 72  DIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIV 111

>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology Domain-Containing Protein Family A Member 5 From Human Length = 128

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 29  RSGWLTKQGDY-IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED 87
           R GWL KQ    +K W++RWF+L    LF+++D      G     ++P    + +  +ED
Sbjct: 23  RRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKE--EGILGSILLPSFQ-IALLTSED 79
Query: 88  LLNKPFAFELSTGEY-TMYFVADTEKEKEEWINS-IGRAIVQHS 129
            +N+ +AF+ +     T YF  DT KE E W+ + +  A+VQ S
Sbjct: 80  HINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTS 123

>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of Human Kiaa0053 Protein Length = 118

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 21/112 (18%)
Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           S P + GWL KQ   +K W++R+F+L+  +L+++KD  +    + P+G + +  C     
Sbjct: 6   SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEED----TKPQGCMYLPGCTI--- 58
Query: 85  AEDLLNKP-----FAFEL--------STGEYTMYFVADTEKEKEEWINSIGR 123
            +++   P     F FE+          G+ +   +A ++ E EEW+  + R
Sbjct: 59  -KEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRR 109

>pdb|1FAO|A Chain A, Structure Of The Pleckstrin Homology Domain From Dapp1PHISH IN COMPLEX WITH INOSITOL 1,3,4,5- Tetrakisphosphate Length = 126

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG--AE 86
           + G+LTKQG  +KTW+ RWF L + +L +FKD   ++P   P  ++ +  C  V+   ++
Sbjct: 20  KEGYLTKQGGLVKTWKTRWFTLHRNELKYFKD--QMSP--EPIRILDLTECSAVQFDYSQ 75
Query: 87  DLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESE 136
           + +N    F L     T Y  A T  E +EWI  +   + Q  + + + E
Sbjct: 76  ERVN---CFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGE 122

>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology Domain-Containing Family A Member 6 From Human Length = 122

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 29  RSGWLTKQGDY-IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA-- 85
           ++GWL KQ    +K W +RWF+L    LF++KD        +  G IP+   L+ R A  
Sbjct: 24  KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKE----ESILGSIPL---LSFRVAAV 76
Query: 86  --EDLLNKPFAFEL-STGEYTMYFVADTEKEKEEWINSIGRA 124
              D +++   F+    G  T +F A++ +E+E WI ++G A
Sbjct: 77  QPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 118

>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human Length = 117

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 29  RSGWLTKQGDY-IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA-- 85
           ++GWL KQ    +K W +RWF+L    LF++KD        +  G IP+   L+ R A  
Sbjct: 13  KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKE----ESILGSIPL---LSFRVAAV 65
Query: 86  --EDLLNKPFAFELS-TGEYTMYFVADTEKEKEEWINSIGRA 124
              D +++   F+    G  T +F A++ +E+E WI ++G A
Sbjct: 66  QPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 107

>pdb|1PLS|A Chain A, Solution Structure Of A Pleckstrin Homology Domain Length = 113

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 29  RSGWLTKQGDYIKTWRRRWFI-LKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED 87
           R G+L K+G    TW+  W + L+ G  F+ K S N     +P+G+IP+         +D
Sbjct: 7   REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDN-----SPKGMIPLKGSTLTSPCQD 61
Query: 88  LLNKPFAFEL-STGEYTMYFVADTEKEKEEWINSIGRAI 125
              + F F++ +T +   +F A   +E++ W+  I +AI
Sbjct: 62  FGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAI 100

>pdb|2X18|A Chain A, The Crystal Structure Of The Ph Domain Of Human Akt3 Protein Kinase Length = 119

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 29  RSGWLTKQGDYIKTWRRRWFILK-QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED 87
           + GW+ K+G+YIK WR R+F+LK  G    +K+         P     V  C  ++    
Sbjct: 9   KEGWVQKRGEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVAKCQLMKTERP 68
Query: 88  LLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
              KP  F +   ++T      F  DT +E+EEW  +I
Sbjct: 69  ---KPNTFIIRCLQWTTVIERTFHVDTPEEREEWTEAI 103

>pdb|1P6S|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of Human Protein Kinase B Beta (PkbAKT) Length = 111

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGST--PRGVIPVGTCLTVRGAE 86
           + GWL K+G+YIKTWR R+F+LK    F         P  T  P     V  C  ++   
Sbjct: 8   KEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKERPEAPDQTLPPLNNFSVAECQLMKTER 67
Query: 87  DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
               +P  F +   ++T      F  D+  E+EEW+ +I
Sbjct: 68  P---RPNTFVIRCLQWTTVIERTFHVDSPDEREEWMRAI 103

>pdb|1UNP|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of Pkb Alpha Length = 121

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 29  RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
           + GWL K+G+YIKTWR R+F+LK  G    +K+   ++     P     V  C  ++   
Sbjct: 8   KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 67
Query: 87  DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
               +P  F +   ++T      F  +T +E+EEW  +I
Sbjct: 68  P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 103

>pdb|2UVM|A Chain A, Structure Of Pkbalpha Ph Domain In Complex With A Novel Inositol Headgroup Surrogate, Benzene 1,2,3,4- Tetrakisphosphate Length = 123

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 29  RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
           + GWL K+G+YIKTWR R+F+LK  G    +K+   ++     P     V  C  ++   
Sbjct: 8   KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 67
Query: 87  DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
               +P  F +   ++T      F  +T +E+EEW  +I
Sbjct: 68  P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 103

>pdb|1UNR|A Chain A, Crystal Structure Of The Ph Domain Of Pkb Alpha In Complex With A Sulfate Molecule Length = 125

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 29  RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
           + GWL K+G+YIKTWR R+F+LK  G    +K+   ++     P     V  C  ++   
Sbjct: 10  KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 69
Query: 87  DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
               +P  F +   ++T      F  +T +E+EEW  +I
Sbjct: 70  P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 105

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 29  RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
           + GWL K+G+YIKTWR R+F+LK  G    +K+   ++     P     V  C  ++   
Sbjct: 11  KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 70
Query: 87  DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
               +P  F +   ++T      F  +T +E+EEW  +I
Sbjct: 71  P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 106

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 29  RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
           + GWL K+G+YIKTWR R+F+LK  G    +K+   ++     P     V  C  ++   
Sbjct: 8   KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 67
Query: 87  DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
               +P  F +   ++T      F  +T +E+EEW  +I
Sbjct: 68  P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 103

>pdb|1H10|A Chain A, High Resolution Structure Of The Pleckstrin Homology Domain Of Protein Kinase BAKT BOUND TO Ins(1,3,4,5)-Tetrakisphophate Length = 125

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 29  RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
           + GWL K+G+YIKTWR R+F+LK  G    +K+   ++     P     V  C   +   
Sbjct: 10  KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLXKTER 69
Query: 87  DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
               +P  F +   ++T      F  +T +E+EEW  +I
Sbjct: 70  P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 105

>pdb|2UZS|A Chain A, A Transforming Mutation In The Pleckstrin Homology Domain Of Akt1 In Cancer (Akt1-Ph_e17k) Length = 125

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 29  RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
           + GWL K+G YIKTWR R+F+LK  G    +K+   ++     P     V  C  ++   
Sbjct: 10  KEGWLHKRGKYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 69
Query: 87  DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
               +P  F +   ++T      F  +T +E+EEW  +I
Sbjct: 70  P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 105

>pdb|2UZR|A Chain A, A Transforming Mutation In The Pleckstrin Homology Domain Of Akt1 In Cancer (Akt1-Ph_e17k) Length = 124

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 29  RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
           + GWL K+G YIKTWR R+F+LK  G    +K+   ++     P     V  C  ++   
Sbjct: 9   KEGWLHKRGKYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 68
Query: 87  DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
               +P  F +   ++T      F  +T +E+EEW  +I
Sbjct: 69  P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 104

>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain Of Pepp1 Length = 123

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 31  GWLTKQ-GDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLL 89
           GWL KQ    ++ W+RRWF+L    LF++KDS      S    V+     +   G     
Sbjct: 15  GWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSRE---ESVLGSVLLPSYNIRPDGPGAPR 71
Query: 90  NKPFAFEL-STGEYTMYFVADTEKEKEEWINSIGRA 124
            + F F     G  T    ADT ++   W+ ++GRA
Sbjct: 72  GRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 107

>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem Length = 228

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 27/133 (20%)
Query: 16  EDYTGIEFWSNPE--RSGWLTKQGDYIKT-----WRRRWFILKQGKLFWFK-DSHNITPG 67
           +D T + F S  E  + GWL   G    T     W++RWF+L+Q KL +F+ DS     G
Sbjct: 45  KDETFLWFRSKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKG 104
Query: 68  STPRGVIPVGTCLTVRGAEDLL---NKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRA 124
           +           + VR A++++   NK    ++   + T + +A++ ++  +W      +
Sbjct: 105 T-----------VEVRSAKEIIDNTNKENGIDIIMADRTFHLIAESPEDASQWF-----S 148
Query: 125 IVQHSRSVTESEV 137
           ++    S T+ E+
Sbjct: 149 VLSQVHSSTDQEI 161

>pdb|2RSG|A Chain A, Solution Structure Of The Cert Ph Domain Length = 94

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 28  ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED 87
           ER G L+K  +YI  W+ RW +LK   L ++K       G   RG I +   +      D
Sbjct: 2   ERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGC--RGSICLSKAVITPHDFD 59
Query: 88  LLNKPFAFELSTGEYTMYFVADTEKEKEEWINSI 121
                  F++S  +   Y  A     +++WI++I
Sbjct: 60  ----ECRFDISVNDSVWYLRAQDPDHRQQWIDAI 89

>pdb|1XX0|A Chain A, Structure Of The C-Terminal Ph Domain Of Human Pleckstrin Length = 127

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 22  EFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGST--PRGVIPVGTC 79
           EF     + G L KQG   K W+ R FIL++   +     H   P     P G I +  C
Sbjct: 17  EFRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYL----HYYDPAGAEDPLGAIHLRGC 72
Query: 80  LTVRGAEDLLN-----KPFAFELSTGEYTMYFV-ADTEKEKEEWINSIGRA 124
           + V   E   N     +   FE+ T +   YF+ A T KE+ EWI +I  A
Sbjct: 73  V-VTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 122

>pdb|2KCJ|A Chain A, Solution Structure Of Fapp1 Ph Domain Length = 108

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 31  GWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTC-LTVRGAEDLL 89
           G L K  +Y+  W+ RWF+L  G L ++    ++  GS  +G I +  C + V  A++  
Sbjct: 11  GVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGS--KGSIKMAVCEIKVHSADNT- 67
Query: 90  NKPFAFELST-GEYTMYFVADTEKEKEEWINSIGRA 124
                 EL   GE   Y  A    E++ W+ ++G +
Sbjct: 68  ----RMELIIPGEQHFYMKAVNAAERQRWLVALGSS 99

>pdb|2I5C|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5 Length = 109

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGST--PRGVIPVGTCLTVRGAE 86
           + G L KQG   K W+ R FIL++   +     H   P     P G I +  C+ V   E
Sbjct: 9   KQGCLLKQGHRRKNWKVRKFILREDPAYL----HYYDPAGAEDPLGAIHLRGCV-VTSVE 63
Query: 87  DLLN-----KPFAFELSTGEYTMYFV-ADTEKEKEEWINSIGRA 124
              N     +   FE+ T +   YF+ A T KE+ EWI +I  A
Sbjct: 64  SNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 107

>pdb|1ZM0|A Chain A, Crystal Structure Of The Carboxyl Terminal Ph Domain Of Pleckstrin To 2.1 Angstroms Length = 114

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 22  EFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGST--PRGVIPVGTC 79
           EF     + G L KQG   K W+ R FIL++   +     H   P     P G I +  C
Sbjct: 4   EFRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYL----HYYDPAGAEDPLGAIHLRGC 59
Query: 80  LTVRGAEDLLN-----KPFAFELSTGEYTMYFV-ADTEKEKEEWINSIGRA 124
           + V   E   N     +   FE+ T +   YF+ A T KE+ EWI +I  A
Sbjct: 60  V-VTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 109

>pdb|1X05|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human Pleckstrin Length = 129

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 22  EFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGST--PRGVIPVGTC 79
           EF     + G L KQG   K W+ R FIL++   +     H   P     P G I +  C
Sbjct: 13  EFRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYL----HYYDPAGAEDPLGAIHLRGC 68
Query: 80  LTVRGAEDLLN-----KPFAFELSTGEYTMYFV-ADTEKEKEEWINSIGRA 124
           + V   E   N     +   FE+ T +   YF+ A T KE+ EWI +I  A
Sbjct: 69  V-VTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 118

>pdb|3RCP|A Chain A, Crystal Structure Of The Fapp1 Pleckstrin Homology Domain Length = 103

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 31  GWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTC-LTVRGAEDLL 89
           G L K  +Y+  W+ RWF+L  G L ++    ++  GS  +G I    C + V  A++  
Sbjct: 3   GVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGS--KGSIKXAVCEIKVHSADNTR 60
Query: 90  NKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESEVV 138
            +     +  GE   Y  A    E++ W+ ++G +      S+T++ +V
Sbjct: 61  XEL----IIPGEQHFYXKAVNAAERQRWLVALGSS----KASLTDTRLV 101

>pdb|1WG7|A Chain A, Solution Structure Of Pleckstrin Homology Domain From Human Kiaa1058 Protein Length = 150

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 19/110 (17%)
Query: 29  RSGWLTKQGDY-------IKTWRRRWFILKQG-----KLFWFKDSHNITPGSTPRGVIPV 76
           + GWL K G+        +++++RR+F L Q       L ++KD         P+G I +
Sbjct: 20  KHGWLYK-GNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDE---KISKEPKGSIFL 75
Query: 77  GTCLTVRGAEDLLNKPFAFELSTGEYTMYFVA-DTEKEKEEWINSIGRAI 125
            +C+ V   ++   + FAFEL   + + Y +A D+E E EEWI  + + +
Sbjct: 76  DSCMGV--VQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKIL 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	2e-37
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	4e-35
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	2e-34
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	3e-34
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	1e-32
2d9y_A	117	Pleckstrin homology domain-containing protein fami	1e-31
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	1e-31
2dkp_A	128	Pleckstrin homology domain-containing family A mem	1e-31
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	7e-31
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	8e-31
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	9e-31
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	1e-30
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	5e-04
2yry_A	122	Pleckstrin homology domain-containing family A mem	2e-30
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	5e-30
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	1e-29
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	2e-28
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	2e-28
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	3e-28
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	4e-28
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	7e-28
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	9e-28
1wi1_A	126	Calcium-dependent activator protein for secretion,	1e-27
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	3e-27
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	3e-27
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	4e-27
3cxb_B	112	Pleckstrin homology domain-containing family M mem	7e-27
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	2e-26
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	8e-26
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	1e-25
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	7e-25
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	2e-24
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	2e-23
2d9v_A	130	Pleckstrin homology domain-containing protein fami	2e-23
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	3e-22
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	4e-22
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	1e-21
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	1e-21
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	1e-21
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	7e-20
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	2e-19
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	1e-18
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	2e-18
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	2e-17
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	5e-17
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	6e-17
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	2e-16
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	2e-16
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	4e-16
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	4e-16
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	7e-16
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	2e-15
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	2e-15
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	2e-15
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	4e-13
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	9e-13
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	2e-12
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	2e-12
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	7e-12
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	9e-12
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	1e-10
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	9e-10
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	3e-09
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	1e-08
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	2e-08
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	3e-07
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	3e-07
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	4e-05
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	8e-05
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	1e-04
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	3e-04
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	4e-04
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	4e-04
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	5e-04
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	6e-04
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	7e-04
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	7e-04
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	8e-04
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	8e-04
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	9e-04

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score =  123 bits (310), Expect = 2e-37
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 24  WSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR 83
            S   + G+LTKQG  +KTW+ RWF L + +L +FKD         P  ++ +  C  V+
Sbjct: 15  PSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQM----SPEPIRILDLTECSAVQ 70

Query: 84  GAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESE 136
                  +   F L     T Y  A T  E +EWI  +   + Q  + + + E
Sbjct: 71  FDYS-QERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGE 122

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score =  116 bits (293), Expect = 4e-35
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 5/98 (5%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           R G+L K+G    TW+  W +L +  + ++K   +    ++P+G+IP+         +D 
Sbjct: 7   REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSD----NSPKGMIPLKGSTLTSPCQDF 62

Query: 89  LNKPFAFELSTGEYTMY-FVADTEKEKEEWINSIGRAI 125
             + F F+++T +   + F A   +E++ W+  I +AI
Sbjct: 63  GKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAI 100

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score =  115 bits (289), Expect = 2e-34
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           + G++ K+G   K W  RWF+LK   + ++            +G I +     V    D 
Sbjct: 10  KQGYMMKKGHRRKNWTERWFVLKPNIISYYVSED----LKDKKGDILLDENCCVESLPDK 65

Query: 89  LNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQH 128
             K   F +   + T    A  +K+K+EWI +I   I   
Sbjct: 66  DGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIHLL 105

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score =  115 bits (289), Expect = 3e-34
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           S   ++G+  KQG  +K W+RR+F L +  + +FK          P  VIP+     V+ 
Sbjct: 12  SAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELE----KEPLRVIPLKEVHKVQE 67

Query: 85  AE--DLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHS 129
            +  D++ +   FE+ T   T Y  AD+ +E   WI ++  AIV   
Sbjct: 68  CKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQR 114

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score =  110 bits (278), Expect = 1e-32
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 13/110 (11%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR- 83
           S P + GWL KQ   +K W++R+F+L+  +L+++KD  +    + P+G + +  C     
Sbjct: 6   SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEED----TKPQGCMYLPGCTIKEI 61

Query: 84  GAEDLLNKPFAFELST--------GEYTMYFVADTEKEKEEWINSIGRAI 125
                    F FE+          G+ +   +A ++ E EEW+  + R  
Sbjct: 62  ATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score =  108 bits (271), Expect = 1e-31
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 7/112 (6%)

Query: 25  SNPERSGWLTKQG-DYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPV-GTCLTV 82
           +   ++GWL KQ    +K W +RWF+L    LF++KD        +  G IP+    +  
Sbjct: 9   APVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEK----EESILGSIPLLSFRVAA 64

Query: 83  RGAEDLLNKPFAFELST-GEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVT 133
               D +++   F+    G  T +F A++ +E+E WI ++G A    S   +
Sbjct: 65  VQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQSGPSS 116

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score =  108 bits (271), Expect = 1e-31
 Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           S    SG+L +     K W+  WF++K   L+ +  S +           P+    TV  
Sbjct: 6   SGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASED----VAALESQPLLGF-TVTL 60

Query: 85  AEDLLNKPFAFELSTGEYTMY-FVADTEKEKEEWINSIGRAIVQHSRS 131
            +D  ++   F+L       Y F AD     + WI++     V    S
Sbjct: 61  VKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVSGPSS 108

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score =  108 bits (271), Expect = 1e-31
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 7/110 (6%)

Query: 25  SNPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPV-GTCLTV 82
           +   R GWL KQ    +K W++RWF+L    LF+++D           G I +    + +
Sbjct: 19  APVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKE----EGILGSILLPSFQIAL 74

Query: 83  RGAEDLLNKPFAFELSTGEY-TMYFVADTEKEKEEWINSIGRAIVQHSRS 131
             +ED +N+ +AF+ +     T YF  DT KE E W+ ++  A +  +  
Sbjct: 75  LTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTSG 124

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score =  106 bits (266), Expect = 7e-31
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 25  SNPERSGWLTKQG-DYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPV-GTCLTV 82
                 GWL KQ    ++ W+RRWF+L    LF++KDS       +  G + +    +  
Sbjct: 9   LPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSRE----ESVLGSVLLPSYNIRP 64

Query: 83  RGAEDLLNKPFAFELST-GEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESE 136
            G      + F F     G  T    ADT ++   W+ ++GRA         +  
Sbjct: 65  DGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRAEGDDYGQPR 119

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score =  106 bits (266), Expect = 8e-31
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 9/124 (7%)

Query: 10  GQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGST 69
           G   +    + +E      + G+L KQG   K W+ R F+L++   F      +    + 
Sbjct: 1   GSSGSSGSLSTVELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPS-KEENR 59

Query: 70  PRGVIPVGTCLTVRGAE-------DLLNKPFAFELSTGEYTMY-FVADTEKEKEEWINSI 121
           P G   +   L     +           +   F++ T + T Y   A ++ E+ EWI +I
Sbjct: 60  PVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAI 119

Query: 122 GRAI 125
            +  
Sbjct: 120 KKLT 123

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score =  105 bits (265), Expect = 9e-31
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 25  SNPERSGWLTKQG-DYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR 83
           S   +SGWL K      + +++RW       + ++ +          +G+IP+    TVR
Sbjct: 6   SGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKE----MYSKGIIPLSAISTVR 61

Query: 84  GAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
                      FE+ T + T  F  + E+E+ +WI+ +  A+   S +
Sbjct: 62  V-----QGDNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKSQSLT 104

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score =  108 bits (272), Expect = 1e-30
 Identities = 22/115 (19%), Positives = 50/115 (43%), Gaps = 12/115 (10%)

Query: 25  SNPERSGWLTKQGDY-----IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTC 79
               + GWL   G        + W++RWF+L+Q KL +F++          +G + V + 
Sbjct: 56  QEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSE----EKLKGTVEVRSA 111

Query: 80  LTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTE 134
             +    D  NK    ++   + T + +A++ ++  +W + + +      + + E
Sbjct: 112 KEI---IDNTNKENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHSSTDQEIRE 163

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 83  RGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRA 124
             A D  ++P +F + T    ++  ADT +E   WI  + R+
Sbjct: 186 VCASDSPDRPNSFVIITANRVLHCNADTPEEMHHWITLLQRS 227

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score =  105 bits (263), Expect = 2e-30
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 25  SNPERSGWLTKQG-DYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPV-GTCLTV 82
           +   ++GWL KQ    +K W +RWF+L    LF++KD        +  G IP+    +  
Sbjct: 20  APVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEK----EESILGSIPLLSFRVAA 75

Query: 83  RGAEDLLNKPFAFELST-GEYTMYFVADTEKEKEEWINSIGRAIVQH 128
               D +++   F+    G  T +F A++ +E+E WI ++G A    
Sbjct: 76  VQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQ 122

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score =  104 bits (261), Expect = 5e-30
 Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 11/117 (9%)

Query: 22  EFWSNPERSGWLTKQGDYIKTWRRRWFILK--QGKLFWFKDSHNITPGSTPRGVIPVGTC 79
           EF     + G L KQG   K W+ R FIL+     L ++  +        P G I +  C
Sbjct: 13  EFRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAG----AEDPLGAIHLRGC 68

Query: 80  LTVRGAEDLLNK----PFAFELSTGEYTMY-FVADTEKEKEEWINSIGRAIVQHSRS 131
           +      +   +       FE+ T +   Y   A T KE+ EWI +I  A       
Sbjct: 69  VVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMASRTGKSG 125

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score =  102 bits (257), Expect = 1e-29
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGK--LFWFKDSHNITPGSTPRGVIPVGTCLTV 82
           S     G L K+G ++K W+ RWF+L + K  L ++    +    +  +GVI +     V
Sbjct: 6   SGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMD----TECKGVIDLAEVEAV 61

Query: 83  R------GAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
                  GA   +++   F++ T      F A      ++W++ I   +     S
Sbjct: 62  APGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSSGPSS 116

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 99.8 bits (249), Expect = 2e-28
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILK--QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE 86
           + G L KQG   K W+ R FIL+     L ++  +        P G I +  C+      
Sbjct: 9   KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGA----EDPLGAIHLRGCVVTSVES 64

Query: 87  DLLNK----PFAFELSTGEYTMY-FVADTEKEKEEWINSIGRAI 125
           +   +       FE+ T +   Y   A T KE+ EWI +I  A 
Sbjct: 65  NSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 108

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score =  100 bits (251), Expect = 2e-28
 Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 11/119 (9%)

Query: 25  SNPERSGWLTKQGD----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCL 80
               ++G+L K+          W++RW  L +   +++    +       +G   +    
Sbjct: 15  PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKD----KQQKGEFAIDGYD 70

Query: 81  TVRGAE--DLLNKPFAFELSTGEY-TMYFVADTEKEKEEWINSIGRAIVQHSRSVTESE 136
                       K   FE+   +     F A + K+ EEW+  +   +      V   +
Sbjct: 71  VRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLGSDVIPED 129

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 99.4 bits (248), Expect = 3e-28
 Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 26  NPERSGWLTKQGD----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLT 81
           +  + G+L K+      +   W++RW ++ +G  +++ +         P+G   +     
Sbjct: 2   SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEK----SKQPKGTFLIKGYSV 57

Query: 82  VRGAE--DLLNKPFAFELST-GEYTMYFVADTEKEKEEWINSIGRAI 125
                      K   FEL++    T  F A +  E  +W++ I   +
Sbjct: 58  RMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLL 104

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127

 Score = 99.7 bits (248), Expect = 4e-28
 Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 28/126 (22%)

Query: 26  NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
           NP+R GWL K G  +KTW+RRWFIL    L++F+ + +      PRG+IP+    ++R  
Sbjct: 4   NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTD----KEPRGIIPLENL-SIREV 58

Query: 86  EDLLNKPFAFELSTGEY----------------------TMYFVADTEKEKEEWINSIGR 123
            D   KP  FEL    +                           A + +EKEEW+ SI  
Sbjct: 59  LD-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKA 117

Query: 124 AIVQHS 129
           +I +  
Sbjct: 118 SISRDP 123

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 97.9 bits (244), Expect = 7e-28
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 28  ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED 87
           ER G L+K  +YI  W+ RW +LK   L ++K           RG I +   +      D
Sbjct: 2   ERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDET--EYGCRGSICLSKAVITPHDFD 59

Query: 88  LLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
                  F++S  +   Y  A     +++WI++I +  
Sbjct: 60  ----ECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHK 93

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125

 Score = 98.5 bits (245), Expect = 9e-28
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 11/119 (9%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
           + GWL K+G+YIKTWR R+F+LK  G    +K+   ++     P     V  C  ++   
Sbjct: 10  KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 69

Query: 87  DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSIGRAIVQHSRSVTESEVVDYD 141
               +P  F +   ++T      F  +T +E+EEW  +I            E E +D+ 
Sbjct: 70  P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVA--DGLKKQEEEEMDFR 123

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 126

 Score = 98.5 bits (245), Expect = 1e-27
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 25  SNPERSGWLTKQGDYI-KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPV--GTCLT 81
           S  + SG+L   G  + K W++R+F+L Q   + F         + P+ ++ +   T   
Sbjct: 6   SGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDY 65

Query: 82  VRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSV 132
                 L      F       T+ F +D E+++  W+ ++ RA  Q  + V
Sbjct: 66  TDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPV 116

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 98.1 bits (244), Expect = 3e-27
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 17/121 (14%)

Query: 28  ERSGWLTKQGD------YIKTWRRRWFILKQ-----GKLFWFKDSHNITPGSTPRGVIPV 76
            + GWL K          +++++RR+F L Q       L ++KD         P+G I +
Sbjct: 19  TKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISK---EPKGSIFL 75

Query: 77  GTCLTVRGAEDLLNKPFAFELST-GEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTES 135
            +C+ V        + FAFEL    + +    AD+E E EEWI  + + +  +  +  + 
Sbjct: 76  DSCMGVVQNNK--VRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQE 133

Query: 136 E 136
           +
Sbjct: 134 K 134

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 96.7 bits (241), Expect = 3e-27
 Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 25  SNPERSGWLTKQG--DYIKTWRRRWFILKQGK--LFWFKDSHNITPGSTPRGVIPVGTCL 80
           S  +  G+L+K G    I+ W+ RWF   + K  L++ + + +    + P   I + + +
Sbjct: 6   SGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQD----ANPLDSIDLSSAV 61

Query: 81  TVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
                     +   FE+ T    +   A T++    W+  +     +   S
Sbjct: 62  FD---CKADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFHNS 109

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 97.0 bits (241), Expect = 4e-27
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 30  SGWLT-KQGDYIKTWRRRWFILK--QGKLFWFKDSHNITP-GSTPRGVIPVGTCLTVRGA 85
            G+L  +  +    + RR+FIL      L W+ D+      G+   G + +     V  A
Sbjct: 18  CGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIA 77

Query: 86  EDLL--NKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
                   PF F ++      +  A+ +K+ ++W+ ++ +A 
Sbjct: 78  TPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQAS 119

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 96.0 bits (239), Expect = 7e-27
 Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 12/107 (11%)

Query: 29  RSGWLTKQGD----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVG--TCLTV 82
           + G L  +        + W+  + +L  G L+ + D  +      P   + +G   C   
Sbjct: 2   KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTD----VIPLLSVNMGGEQCGGC 57

Query: 83  RGAEDLLNKPFAFELS-TGEYTMYFVADTEKEKEEWINSIGRAIVQH 128
           R A    ++P AF++  +    +   A++E E  EW+  + +A+ + 
Sbjct: 58  RRANT-TDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKG 103

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 95.3 bits (237), Expect = 2e-26
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 25  SNPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR 83
              E+ G+L K+ D   K W+RR   +K G L            +     + + TC  V+
Sbjct: 8   YGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHA-----TSNRQPAKLNLLTC-QVK 61

Query: 84  GAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
              +      +F+L +   T +F A+ E++   WI+ +  + 
Sbjct: 62  PNAE---DKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSK 100

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 92.9 bits (231), Expect = 8e-26
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 30  SGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLL 89
            G L K  +Y+  W+ RWF+L  G L ++            +G I +  C     + D  
Sbjct: 2   EGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQD--DVCKGSKGSIKMAVCEIKVHSAD-- 57

Query: 90  NKPFAFEL-STGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
                 EL   GE   Y  A    E++ W+ ++G +    + +
Sbjct: 58  --NTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKASLTDT 98

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 93.0 bits (231), Expect = 1e-25
 Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 9/114 (7%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQ--GKLFWFKDSHNITPGSTPRGVIPVGTCLTV 82
           S     G+L K  + +  W+ R+F+L    G L +F +  +      PRG + +   +  
Sbjct: 6   SGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQS--RNQKPRGTLQLAGAVIS 63

Query: 83  RGAEDLLNKPFAFELSTGEY-TMYFVADTEKEKEEWINSIGRAIVQHSRSVTES 135
              ED       F ++          A   KE++ W++ +      H+ ++ ++
Sbjct: 64  PSDED----SHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAIGKN 113

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 93.7 bits (232), Expect = 7e-25
 Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 25  SNPERSGWLTKQGD----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCL 80
               ++G+L K+          W++RW  L +   +++    +       +G   +    
Sbjct: 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKD----KQQKGEFAIDGYD 159

Query: 81  TVRGAE--DLLNKPFAFELSTGEY-TMYFVADTEKEKEEWINSIGRAI 125
                       K   FE+   +     F A + K+ EEW+  +   +
Sbjct: 160 VRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 207

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 89.5 bits (222), Expect = 2e-24
 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           S  E S +L    +    W+ RW  ++   L +++D +        +  + +  C  V  
Sbjct: 6   SGLETSSYLNVLVN--SQWKSRWCSVRDNHLHFYQDRNR---SKVAQQPLSLVGCEVVPD 60

Query: 85  AEDLLNKPFAFELST-GEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
                +  ++F +   GE      A + +E   W+  +         S
Sbjct: 61  PSP--DHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSESGSGPSS 106

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 87.3 bits (216), Expect = 2e-23
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 15/107 (14%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDSHNITPGSTPRGVIPVGT-CLTVRGAE 86
           +SGWL +Q   +K W++ WF L   G L ++ D             + +   C+ +R  +
Sbjct: 7   KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQT----RQNIEDKVHMPMDCINIRTGQ 62

Query: 87  --------DLLNKPFAFELSTGEY-TMYFVADTEKEKEEWINSIGRA 124
                   D  +K    ++   +  T+   A++  +   W  ++  +
Sbjct: 63  ECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDS 109

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 87.7 bits (217), Expect = 2e-23
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 11/116 (9%)

Query: 28  ERSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE 86
            R GWL +Q   ++ W+R WF L   G L ++ D          R VI         G E
Sbjct: 9   VRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDE--EDRVVIHFNVRDIKVGQE 66

Query: 87  -------DLLNKPFAFELSTGEYTMYFV-ADTEKEKEEWINSIGRAIVQHSRSVTE 134
                  +  ++     ++  E +   + A+T  +   W  ++  A    + +   
Sbjct: 67  CQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAGAT 122

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 85.2 bits (210), Expect = 3e-22
 Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 4/95 (4%)

Query: 31  GWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLN 90
           G+L  +    + +   W  L+   LF++ D  +          + +     +        
Sbjct: 22  GFLLIKRSGYREYEHYWTELRGTTLFFYTDKKS----IIYVDKLDIVDLTCLTEQNSTEK 77

Query: 91  KPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
               F L   +  +    +  +  EEW   I    
Sbjct: 78  NCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVT 112

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 85.2 bits (210), Expect = 4e-22
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 25  SNPERSGWLT----------KQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVI 74
           S+  + GWL           + G  I+ W++ + +L+   L+ +KD    T  S     I
Sbjct: 1   SDAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPI 60

Query: 75  PVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTE 134
            V  CL    +     +   F L+T +    F A+   +   WI +I  +   +      
Sbjct: 61  SVNACLIDI-SYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSNLNEEDTGV 119

Query: 135 SE 136
           + 
Sbjct: 120 TN 121

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A* Length = 264

 Score = 86.5 bits (213), Expect = 1e-21
 Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 13/116 (11%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQG-------KLFWFKDSHN-ITPGSTPRGVIPVGTCL 80
           + G+L K     K+  +R+F+L+         +L ++++        S P+  IP+ +C 
Sbjct: 12  KVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCF 67

Query: 81  TVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESE 136
            +    D  NK     L T +      AD+E E++ W  ++ +   +       + 
Sbjct: 68  NINKRADSKNK-HLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRAKGHHDGAA 122

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120

 Score = 82.8 bits (204), Expect = 1e-21
 Identities = 17/120 (14%), Positives = 42/120 (35%), Gaps = 16/120 (13%)

Query: 24  WSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCL--- 80
                +SG+L ++  ++K++ + +++L    L  FK +        P   + +  C    
Sbjct: 3   PFTEIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKK-DLVPVMSLALSECTVTE 61

Query: 81  ----TVRGAEDLLNKPFAFELS-------TGEYTMYFVADTEKEKEEWINSIGRAIVQHS 129
                   + +       F L           +   F AD+ +    W +++ + +   S
Sbjct: 62  HSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNL-KILTSTS 120

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Length = 134

 Score = 83.2 bits (205), Expect = 1e-21
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 26/131 (19%)

Query: 25  SNPERSGWLT--KQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTV 82
           S+ E  G+LT  +       W RRW +L    + ++    +      P G I +  C + 
Sbjct: 3   SSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDD-EKRKNPIGRINLANCTSR 61

Query: 83  RGA---EDLLNKPFAFELSTGEY--------------------TMYFVADTEKEKEEWIN 119
           +      +   +   FEL T                         +  ADT++E++ W+ 
Sbjct: 62  QIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQ 121

Query: 120 SIGRAIVQHSR 130
            + + +V    
Sbjct: 122 KLNQVLVDIRL 132

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 79.4 bits (195), Expect = 7e-20
 Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 13/116 (11%)

Query: 25  SNPERSGWLTKQGD-----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTC 79
            N      L K+           ++ R F+L +  L +++           +G I V   
Sbjct: 13  FNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKY---RKGFIDVSKI 69

Query: 80  LTVRGAEDLLNKP-----FAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSR 130
             V   ++          + F++     T+Y  A + + ++ W+  +   I  ++ 
Sbjct: 70  KCVEIVKNDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIKNNNN 125

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129

 Score = 77.6 bits (191), Expect = 2e-19
 Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 15/117 (12%)

Query: 28  ERSGWLTKQGDYI------KTWRRRWFILKQGKLFWFKDSHNITP-------GSTPRGVI 74
           E+SG L             K W   W +L    L ++++     P       GS P   +
Sbjct: 13  EKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSV 72

Query: 75  PVGTCLTVRGAEDLLNKPFAFELSTGEYTMY-FVADTEKEKEEWINSIGRAIVQHSR 130
            +     +     L ++     + T     +   +D E E   W  ++   I +  R
Sbjct: 73  DLRGA-ALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIERLVR 128

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 137

 Score = 75.8 bits (186), Expect = 1e-18
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 12/120 (10%)

Query: 27  PERSGWLT---KQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR 83
           PE    L     +   +K +R+ W + K+  L ++K          P   + +  C  V 
Sbjct: 9   PELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEA--PGDPIQQLNLKGC-EVV 65

Query: 84  GAEDLLNKPFAFEL----STGEYTMYFVADTEKEKEEWINSIGRAIVQHSR--SVTESEV 137
              ++  + F  +L      G   +Y     E++   W+     A    +   S   SEV
Sbjct: 66  PDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASKGRTMADSSYTSEV 125

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Length = 124

 Score = 74.5 bits (183), Expect = 2e-18
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 16/116 (13%)

Query: 28  ERSGWLTKQGDY-------IKTWRRRWFILKQGKLFWFKDSHNITPG--------STPRG 72
           +++G L +            K W   W +L+ G L +FKDS     G        STP  
Sbjct: 9   DKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEY 68

Query: 73  VIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMY-FVADTEKEKEEWINSIGRAIVQ 127
            + +         +D  ++    EL + + + Y    D+E     W  +I + I +
Sbjct: 69  TVELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQE 124

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 75.4 bits (184), Expect = 2e-17
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 16/120 (13%)

Query: 27  PERSGWLTKQGDYI------------KTWRRRWFILKQGKLFWFKDSHNITPG--STPRG 72
             ++G L  +   +            + W+  W  LK   LF+++          S P+ 
Sbjct: 11  VRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKH 70

Query: 73  VIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMY-FVADTEKEKEEWINSIGRAIVQHSRS 131
            + V   + V+   +   K F F LS      + F   ++ E E WI +I  A       
Sbjct: 71  AVWVENSI-VQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAVAR 129

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 123

 Score = 71.1 bits (174), Expect = 5e-17
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 28  ERSGWLTKQGDYI--------KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTC 79
           +  G L ++ +          ++W+  + +L++G L ++KD+   + G    G +PV   
Sbjct: 9   QMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLA 68

Query: 80  L-TVRGAEDLLNKPFAFELSTGEYTMY-FVADTEKEKEEWINSIGRAIVQHSRS 131
                 A D   +   F+L   +   Y F A  E E   W+  +  AI     S
Sbjct: 69  RAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGPSS 122

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score = 71.3 bits (174), Expect = 6e-17
 Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 31/125 (24%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           S    + WL K    +K+W + W +LK G L  +K   N        G + +  C  +  
Sbjct: 6   SGIVMADWL-KIRGTLKSWTKLWCVLKPGVLLIYKTQKN----GQWVGTVLLNACEIIER 60

Query: 85  AEDLLNKPFAFELSTGEYT------------------------MYFVADTEKEKEEWINS 120
                   F F+L                              +   A +E +   W+++
Sbjct: 61  PSK--KDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDA 118

Query: 121 IGRAI 125
           +  A+
Sbjct: 119 LELAL 123

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 112

 Score = 69.2 bits (169), Expect = 2e-16
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 9/104 (8%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGK---LFWFKDSHNITPGSTPRGVIPV-GTCL 80
           S     G L       +TW   W  +       L     S +          IP+    L
Sbjct: 6   SGSLLCGPLRLSESG-ETWSEVWAAIPMSDPQVLHLQGGSQD----GRLPRTIPLPSCKL 60

Query: 81  TVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRA 124
           +V   E+ L+    ++L   + + Y  A + + +++W+ ++  A
Sbjct: 61  SVPDPEERLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTA 104

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Length = 125

 Score = 69.7 bits (170), Expect = 2e-16
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 14/116 (12%)

Query: 29  RSGWLTKQGDYIK--TWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE 86
           R GWLT     I     +  WF+L    L W+KD          + ++ V         +
Sbjct: 14  RKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDD----EEKEKKYMLSVDNLKLRDVEK 69

Query: 87  DLLNKPFAFELSTGEY--------TMYFVADTEKEKEEWINSIGRAIVQHSRSVTE 134
             ++    F L   E          +    +T++E + W  S  RA V   R   +
Sbjct: 70  GFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGDK 125

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 72.8 bits (179), Expect = 4e-16
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDSHN-ITPGSTPRGVIPVGTCLTVRGAE 86
           + GWL K+G+YIKTWR R+F+LK  G    +K+    +     P     V  C  ++   
Sbjct: 8   KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 67

Query: 87  DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
               +P  F +   ++T      F  +T +E+EEW  +I
Sbjct: 68  P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 103

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Length = 128

 Score = 68.7 bits (167), Expect = 4e-16
 Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 21/122 (17%)

Query: 25  SNPERSGWLTKQGD--YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTC--- 79
           + P +  +L K+      K W++++  L       +  S N    ST    + +      
Sbjct: 2   AIPIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVK 61

Query: 80  ----------------LTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGR 123
                            +    +          +S+   T +F A + +E++ W+ +I  
Sbjct: 62  VPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIES 121

Query: 124 AI 125
            I
Sbjct: 122 QI 123

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score = 72.1 bits (176), Expect = 7e-16
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 14/111 (12%)

Query: 26  NPERSGWLTKQG-DYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVG------- 77
           N  + G++ K G    + +R+RWF +   +L +FKD  +    +  RG + +G       
Sbjct: 268 NYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLD----AFARGEVFIGSKESGYT 323

Query: 78  -TCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQ 127
                    +   + P    + T +    F  +TE ++ EW+ +  +A+ +
Sbjct: 324 VLHGFPPSTQGH-HWPHGITIVTPDRKFLFACETESDQREWVAAFQKAVDR 373

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 70.0 bits (170), Expect = 2e-15
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 16/124 (12%)

Query: 28  ERSGWLTKQGDYI------------KTWRRRWFILKQGKLFWFKDSHNITPG--STPRGV 73
            ++GWL  +                + W++ W  LK   L +++     +    S PR  
Sbjct: 12  RKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCA 71

Query: 74  IPVGTCLTVRGAEDLLNKPFAFELSTGEYTMY-FVADTEKEKEEWINSIGRAIVQHSRSV 132
           +     + V+   +   K   F LS     +Y F A ++ + E W+ +I  A        
Sbjct: 72  LFAEDSI-VQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLFAKK 130

Query: 133 TESE 136
              E
Sbjct: 131 HGKE 134

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Length = 169

 Score = 68.0 bits (165), Expect = 2e-15
 Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 30/131 (22%)

Query: 29  RSGWLTKQG-----DYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR 83
                 K+           +++  F+L   KL +++         + +G I V     V 
Sbjct: 5   LESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVE 64

Query: 84  GAEDLLN-------------------------KPFAFELSTGEYTMYFVADTEKEKEEWI 118
                 N                          P+ F++   E  +Y  + TE+ ++ WI
Sbjct: 65  TVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWI 124

Query: 119 NSIGRAIVQHS 129
           + +   I  +S
Sbjct: 125 HQLKNVIRYNS 135

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Length = 385

 Score = 70.4 bits (171), Expect = 2e-15
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 24  WSNPERSGWL---TKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCL 80
            +   ++G+L    K G    TW R+++  + G L                  + +  C 
Sbjct: 275 RNLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDV-----AGGLAMDIDNC- 328

Query: 81  TVRGAEDLLNKPFAFELSTGEY--TMYFVADTEKEKEEWINSIGRAIVQHSRSVTESE 136
           +V   +   ++ + F++++ +   +    A+++K+ EEWI +I     Q   S    E
Sbjct: 329 SVMAVDCE-DRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQIYLSENPEE 385

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 Length = 122

 Score = 60.7 bits (147), Expect = 4e-13
 Identities = 15/114 (13%), Positives = 39/114 (34%), Gaps = 14/114 (12%)

Query: 25  SNPERSGWLTKQGDY--------IKTWRRRWFILKQGKLFWFKDSH----NITPGSTPRG 72
           +     G++T++ ++         ++W + +   K G++ ++KD      N         
Sbjct: 6   AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEP 65

Query: 73  VIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMY-FVADTEKEKEEWINSIGRAI 125
              +     +  A D   K     +      ++   A  + E  +W+ S+    
Sbjct: 66  SYDLQNA-AIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQS 118

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Length = 126

 Score = 60.0 bits (145), Expect = 9e-13
 Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 16/120 (13%)

Query: 27  PERSGWLTK-------QGDYIKTWRRRWFILKQGKLFWFKDSHNITPG-----STPRGVI 74
           P   G L +       +   + +W R W +L    L ++              STP   +
Sbjct: 1   PTMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKV 60

Query: 75  PVGTCLTVRGAEDLLNKPFAFELSTGE--YTMYFVADTEKEKEEWINSIGRAIVQHSRSV 132
            +     V+  +D    P  F+L+  +      F   +      W   +  A       V
Sbjct: 61  SI-VGWMVQLPDD-PEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSSRPQV 118

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A* Length = 173

 Score = 60.5 bits (146), Expect = 2e-12
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 12/123 (9%)

Query: 24  WSNPERSGWL---TKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCL 80
            S PE + ++     +   +K +++ W   K   +  +K         TP   + +  C 
Sbjct: 44  TSIPELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEES--SGTPAHQMNLRGC- 100

Query: 81  TVRGAEDLLNKPFAFEL----STGEYTMYFVADTEKEKEEWINSIGRAIVQHSR--SVTE 134
            V    ++  + F  +L    + G   ++   D EK+   W+ +   A    +   S   
Sbjct: 101 EVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRLASKGKTMADSSYN 160

Query: 135 SEV 137
            EV
Sbjct: 161 LEV 163

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* Length = 347

 Score = 62.0 bits (150), Expect = 2e-12
 Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 30/135 (22%)

Query: 15  PEDYTGIEFWS--NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRG 72
           PED      ++  NP+R GWL K G  +KTW+RRWFIL    L++F+ + +      PRG
Sbjct: 199 PEDDGNDLTYTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTD----KEPRG 254

Query: 73  VIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMY----------------------FVADT 110
           +IP    L++R  ED   KP  FEL    +                           A +
Sbjct: 255 IIP-LENLSIREVED-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPS 312

Query: 111 EKEKEEWINSIGRAI 125
            +EKEEW+ SI  +I
Sbjct: 313 PEEKEEWMKSIKASI 327

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Length = 106

 Score = 57.3 bits (138), Expect = 7e-12
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 10/104 (9%)

Query: 31  GWLTKQGDYI--------KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCL-T 81
           G+L ++ ++         ++W   + ++   ++ ++KD+ +   G      +PV      
Sbjct: 3   GFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAI 62

Query: 82  VRGAEDLLNKPFAFELSTGEYTMY-FVADTEKEKEEWINSIGRA 124
              A D   K   F+L   +   Y F A  ++E   WI +I  A
Sbjct: 63  CEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 57.4 bits (138), Expect = 9e-12
 Identities = 27/107 (25%), Positives = 38/107 (35%), Gaps = 12/107 (11%)

Query: 26  NPERSGWLTKQGD--YIKTWRRRWFILKQG------KLFWFKDSHNITPGSTPRGVIPVG 77
              + G+L  Q    + K WRR    L  G      +L   +           R VI + 
Sbjct: 11  GAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLS 70

Query: 78  TCLTVRGAEDLLNKP---FAFELSTGEYTMYFVADTEKEKEEWINSI 121
            CL V  A    + P    AF L T E      A    E+ +W+ +I
Sbjct: 71  DCLRVAEAGGEASSPRDTSAFFLETKERLYLLAAPAA-ERGDWVQAI 116

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Length = 256

 Score = 56.7 bits (136), Expect = 1e-10
 Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 9/109 (8%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITP-GSTPRGVIPVGTCLTVR 83
           S+PE  G+L  +    K+W++ +  L++  L+      +  P        +      ++ 
Sbjct: 130 SSPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFSLI 189

Query: 84  GAEDLLNKP--FAFEL------STGEYTMYFVADTEKEKEEWINSIGRA 124
                 N P      +      +  +      A+ E+ +  W+ +    
Sbjct: 190 AGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLL 238

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A Length = 124

 Score = 52.1 bits (124), Expect = 9e-10
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 8/112 (7%)

Query: 27  PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITP-----GSTPRGVIPVGTCLT 81
            ++ G L       + W R +  +   KL +  D           GS  RG++ + T   
Sbjct: 12  HKQQGELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNV 71

Query: 82  VRGAEDLLNKPFAFELS---TGEYTMYFVADTEKEKEEWINSIGRAIVQHSR 130
           V+  +    K F F L     G+  + F  D  +E  EW  SI     +   
Sbjct: 72  VKAPQGKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWKIDT 123

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} Length = 117

 Score = 50.8 bits (121), Expect = 3e-09
 Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 17/114 (14%)

Query: 30  SGWL---TKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR--G 84
            GWL    +       W +++ I+   K+ ++ DS      S P  V+ +     VR   
Sbjct: 4   EGWLSLPVRNNTKKFGWVKKYVIVSSKKILFY-DSEQDKEQSNPYMVLDIDKLFHVRPVT 62

Query: 85  AEDLLNK-----PFAFELSTGEYT------MYFVADTEKEKEEWINSIGRAIVQ 127
             D+        P  F++            +  +A++ +E+++W++ + + I +
Sbjct: 63  QTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIPK 116

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 129

 Score = 49.3 bits (117), Expect = 1e-08
 Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 9/108 (8%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           + GW+          +R ++ L    L  F++      GS     IP+   L +    D 
Sbjct: 10  KEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNES----GSKYYKEIPLSEILRISSPRDF 65

Query: 89  L-----NKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
                 + P  FE+ T     +   +        + +     +  ++S
Sbjct: 66  TNISQGSNPHCFEIITDTMVYFVGENNGDSSHNPVLAATGVGLDVAQS 113

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 48.5 bits (115), Expect = 2e-08
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           R GW+    +     +R ++ L    +  F+++      +     IP+   LTV  A++ 
Sbjct: 10  REGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNT----TNRYYKEIPLSEILTVESAQNF 65

Query: 89  L-----NKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQ 127
                   P  FE+ T   T YFV +         +  G    +
Sbjct: 66  SLVPPGTNPHCFEIVTANAT-YFVGEMPGGTPGGPSGQGAEAAR 108

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 132

 Score = 45.7 bits (108), Expect = 3e-07
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 3/112 (2%)

Query: 21  IEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCL 80
           I+   N      +  Q    +    R+F+L    L     S     G   +G IP+   +
Sbjct: 22  IKTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPR-MSGFMYQGKIPI-AGM 79

Query: 81  TVRGAEDLLNKPFAFELS-TGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
            V   +++      FE++ +    +    +  ++ +EW+  + R       S
Sbjct: 80  VVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKSGPSS 131

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus} Length = 224

 Score = 46.7 bits (110), Expect = 3e-07
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 41  KTWRRRWFILKQGK-------LFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPF 93
           K W+ RW +L++         +  +KD    + G   R  + +     +  A        
Sbjct: 21  KKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEGLAH 80

Query: 94  AFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSR 130
              +      +    D+ +    W   I  A+ +  R
Sbjct: 81  TLAIICLSQAVMLGFDSHEAMCAWDTRIRYALGEVHR 117

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B* Length = 113

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 8/105 (7%)

Query: 27  PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNIT-PGSTPRGVIPVGTC-----L 80
           P +   L   GD ++        L++   F   D   +       RG+           L
Sbjct: 4   PGQY--LVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRL 61

Query: 81  TVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
            V   +D       F+L     +  F A+  K K EW+  +    
Sbjct: 62  AVVNVKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETK 106

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Length = 402

 Score = 40.2 bits (94), Expect = 8e-05
 Identities = 21/128 (16%), Positives = 36/128 (28%), Gaps = 18/128 (14%)

Query: 21  IEFWSNPE---------RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPR 71
           +  W   +          +G +          ++R F L   ++   K           +
Sbjct: 242 VLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYK 301

Query: 72  GVIPVGTCLTVRGAEDLLNKPF------AFELS--TGEYTMYFVADTEKEKEEWINSIGR 123
           G I +     V   ED  +  F      AF+L     E    F A   +EK  W+ +   
Sbjct: 302 GRIDM-DKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFRE 360

Query: 124 AIVQHSRS 131
                   
Sbjct: 361 ERKMVQED 368

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 14/118 (11%)

Query: 21  IEFWSNPE---RSGWLTKQGDYIKTWRR--RWFILKQGKLFWFKDSHNITPGSTP----- 70
           I+ W   +          +G   +   +  R   L  G +   K +H             
Sbjct: 232 IDGWEGKDIGQCCNEFIMEGTLTRVGAKHERHIFLFDGLMICCKSNHGQPRLPGASNAEY 291

Query: 71  --RGVIPVGTCLTVRGAEDLLNKPFAFELS-TGEYTMYFVADTEKEKEEWINSIGRAI 125
             +    +   + +   +D      AFE+    E ++ F A + +EK  W+ ++    
Sbjct: 292 RLKEKFFM-RKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQ 348

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 18/128 (14%)

Query: 21  IEFWSNPE---------RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPR 71
           IE W   +          SG LT+        ++R F L   +L + K           +
Sbjct: 319 IEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYK 378

Query: 72  GVIPVGTCLTVRGAEDLLNK------PFAFELSTG--EYTMYFVADTEKEKEEWINSIGR 123
           G + +   L V   ED  ++        AF L  G    +        ++K+ W+ +  R
Sbjct: 379 GRLDM-DGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAR 437

Query: 124 AIVQHSRS 131
              Q    
Sbjct: 438 EREQVQLD 445

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Length = 385

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 29/151 (19%), Positives = 45/151 (29%), Gaps = 22/151 (14%)

Query: 1   MENIWRALSGQDPNPEDYTGIEFWSNPE-RSGWLTKQGD-YIKTWRRRW----------- 47
           +E+  R L        +Y  +E   N +     +  +G    K  R +            
Sbjct: 224 LEDYQRRLDTSSLKLSEYPNVEELRNLDLTKRKMIHEGPLVWKVNRDKTIDLYTLLLEDI 283

Query: 48  --FILKQGKLFWFKDSHNITPGS-----TPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG 100
              + KQ      +    I   +     T   VI + T + VR         F   +S  
Sbjct: 284 LVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLST-VLVRQVATDNKALFVISMSDN 342

Query: 101 EYTMY-FVADTEKEKEEWINSIGRAIVQHSR 130
              +Y  VA T  EK  W + I R       
Sbjct: 343 GAQIYELVAQTVSEKTVWQDLICRMAASVKE 373

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 28  ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKD-----SHNITPGSTPRGVIPVGTCLTV 82
           +      K+G  +K   +     +   LF   D               +  + V      
Sbjct: 239 QPGREFLKEGTLMKVTGKN---RRPRHLFLMNDVLLYTYPQKDGKYRLKNTLAVANMKVS 295

Query: 83  RGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
           R   +    P+A ++ T E  +   A +  E++EW   + RA+ +  ++
Sbjct: 296 RPVME--KVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPEDYKA 342

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 20/145 (13%), Positives = 39/145 (26%), Gaps = 20/145 (13%)

Query: 1   MENIWRALSGQDPNPEDYTGI-EFWSNPERSGWLTKQGD-YIKTWRRRW----------- 47
           +++  R L            + EF +       L  +G    +  + +            
Sbjct: 379 LKDYQRRLDLSHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDL 438

Query: 48  --FILKQGKLFWFKDSHNITPG-----STPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG 100
              + +Q +    K             +  R V+ + + +T   A D       F     
Sbjct: 439 LLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVLFTWDQE 498

Query: 101 EYTMYFVADTEKEKEEWINSIGRAI 125
                 VA T  E++ W   I    
Sbjct: 499 AQIYELVAQTVSERKNWCALITETA 523

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 22/141 (15%), Positives = 39/141 (27%), Gaps = 26/141 (18%)

Query: 1   MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFIL---------K 51
           + N   ++   D +  +Y        P+  G L       ++   R+  L         +
Sbjct: 214 ITNFQLSIENLDQSLANY------GRPKIDGELKITSVERRSKTDRYAFLLDKALLICKR 267

Query: 52  QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELS--TGEYTMYFVAD 109
           +G  +  K S N+                   G  D       F L    G         
Sbjct: 268 RGDSYDLKASVNLHS---------FQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFK 318

Query: 110 TEKEKEEWINSIGRAIVQHSR 130
           T + K++W+     AI     
Sbjct: 319 TRELKKKWMEQFEMAISNIYP 339

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A Length = 151

 Score = 36.7 bits (84), Expect = 7e-04
 Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 12/109 (11%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           + G + K+       RRR  +L +G   ++ D  N       +G IP    L        
Sbjct: 54  KMGPVDKRKGLF--ARRRQLLLTEGPHLYYVDPVN----KVLKGEIPWSQELRPE----- 102

Query: 89  LNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESEV 137
                 F + T   T Y   D      +W   I     Q  +S  ++ V
Sbjct: 103 AKNFKTFFVHTPNRTYYL-MDPSGNAHKWCRKIQEVWRQRYQSHPDAAV 150

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Length = 377

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 20/148 (13%), Positives = 39/148 (26%), Gaps = 20/148 (13%)

Query: 1   MENIWRALSGQDPNPEDYTGI-EFWSNPERSGWLTKQGD-YIKTWRRRW----------- 47
           +++  R L            + EF +       L  +G    +  + +            
Sbjct: 226 LKDYQRRLDLSHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDL 285

Query: 48  --FILKQGKLFWFKDSHNITPGS-----TPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG 100
              + +Q +    K        +       R V+ + + +T   A D       F     
Sbjct: 286 LLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVLFTWDQE 345

Query: 101 EYTMYFVADTEKEKEEWINSIGRAIVQH 128
                 VA T  E++ W   I       
Sbjct: 346 AQIYELVAQTVSERKNWCALITETAGSL 373

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens} Length = 185

 Score = 37.0 bits (85), Expect = 8e-04
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 4/105 (3%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGS--TPRGVIPVGTCLTVRGAE 86
           R G +  +    +    +  +L    +F  +        S      VI +   + VR   
Sbjct: 73  RDGSVFLKNAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLI-VREVA 131

Query: 87  DLLNKPFAFELSTGEYTMY-FVADTEKEKEEWINSIGRAIVQHSR 130
                 F   +   +  M    A +++E+  WI  I   I   +R
Sbjct: 132 HEEKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTLNR 176

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 22/141 (15%), Positives = 38/141 (26%), Gaps = 26/141 (18%)

Query: 1   MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFIL---------K 51
           + N   ++   D +   Y        P+  G L       ++   R+  L         +
Sbjct: 386 ITNFQLSIENLDQSLAHY------GRPKIDGELKITSVERRSKMDRYAFLLDKALLICKR 439

Query: 52  QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELS--TGEYTMYFVAD 109
           +G  +  KD  N+                   G  D       F L    G         
Sbjct: 440 RGDSYDLKDFVNLHS---------FQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFK 490

Query: 110 TEKEKEEWINSIGRAIVQHSR 130
           T + K++W+     AI     
Sbjct: 491 TRELKKKWMEQFEMAISNIYP 511

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Length = 368

 Score = 37.1 bits (86), Expect = 9e-04
 Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 29/150 (19%)

Query: 1   MENIWRALSGQDPNPEDYTGI-EFWSNPERSGWLTKQGD-YIKTWRRRW----------- 47
           +E   + L              EF S    +  +  +G    +  + +            
Sbjct: 220 LEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDL 279

Query: 48  --FILKQGKLFWFKDSHNITPGS-----TPRGVIPVGTCLTVRGAEDLLNKPFAFEL--- 97
              + KQ +    K       GS     T   V+ +   L       +     AF +   
Sbjct: 280 LVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLI----RSVATDKRAFFIICT 335

Query: 98  -STGEYTMY-FVADTEKEKEEWINSIGRAI 125
              G   +Y  VA T  +K  W+  +  A+
Sbjct: 336 SKLGPPQIYELVALTSSDKNTWMELLEEAV 365

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
1wi1_A	126	Calcium-dependent activator protein for secretion,	99.94
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	99.94
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	99.94
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	99.93
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	99.93
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	99.93
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	99.92
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	99.92
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	99.92
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	99.92
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	99.92
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	99.92
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	99.92
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	99.92
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	99.91
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	99.91
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	99.91
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.91
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	99.91
2dkp_A	128	Pleckstrin homology domain-containing family A mem	99.91
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	99.9
2d9y_A	117	Pleckstrin homology domain-containing protein fami	99.9
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	99.9
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	99.9
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	99.9
3cxb_B	112	Pleckstrin homology domain-containing family M mem	99.9
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	99.9
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	99.9
2d9v_A	130	Pleckstrin homology domain-containing protein fami	99.9
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	99.9
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	99.9
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	99.9
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	99.9
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	99.9
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	99.9
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	99.9
2yry_A	122	Pleckstrin homology domain-containing family A mem	99.9
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	99.89
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	99.89
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	99.89
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	99.89
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	99.89
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	99.89
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	99.87
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	99.87
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.86
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	99.86
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	99.85
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	99.85
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	99.85
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	99.85
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	99.85
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	99.84
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.84
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.82
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	99.81
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.8
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.8
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	99.78
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	99.77
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	99.77
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	99.76
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.71
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	99.67
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	99.65
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	99.63
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	99.6
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.57
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	99.55
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	99.55
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	99.54
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	99.09
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	98.95
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	98.95
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	98.94
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	98.64
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	98.58
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	98.52
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	98.46
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	98.38
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	98.34
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	98.33
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	98.31
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.3
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	98.26
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	98.19
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	98.16
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.14
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.13
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	98.13
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	98.04
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	97.97
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	97.95
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	97.95
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	97.94
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	97.87
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	97.84
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	97.63
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	97.58
1fho_A	119	UNC-89; pleckstrin homology domain, electrostatics	96.87
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	96.7
2adz_A	178	Alpha-1-syntrophin; protein binding; NMR {Mus musc	96.36
3hie_A	171	Protein PSL1, exocyst complex component SEC3; PH d	93.81
3a58_A	320	Exocyst complex component SEC3; protein complex, P	90.38
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	89.09
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	88.29
3a98_B	203	Engulfment and cell motility protein 1; protein-pr	87.4
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	86.23

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.94  E-value=1.4e-26  Score=146.83  Aligned_cols=106  Identities=23%  Similarity=0.375  Sum_probs=90.0

Q ss_pred             cccceEEEEEeeCC-CCCCeeeEEEEEECCeEEEEc----cCCCCCCCCCccEEEeCCCeEEee--cCcccCCCCceEEE
Q 041556           25 SNPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFK----DSHNITPGSTPRGVIPVGTCLTVR--GAEDLLNKPFAFEL   97 (143)
Q Consensus        25 ~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~y~----~~~~~~~~~~~~~~i~L~~~~~~~--~~~~~~~~~~~f~i   97 (143)
                      .++.++|||+|+|+ .++.|++|||||.+..|+||+    ++.    ...|.|+|.|.++++..  +.++...++++|.|
T Consensus         6 ~n~~~~G~L~KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~----~~~p~G~I~L~g~tV~~~~~~~~~~~~k~~F~~   81 (126)
T 1wi1_A            6 SGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREK----KAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNA   81 (126)
T ss_dssp             CCEEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCSS----SSCCSEEEECSSCEEEECCCCSSCCSCSSEEEE
T ss_pred             CCCceeEEEEEeCCCcccccceEEEEEeCCEEEEEEccccccc----CCCCceEEECCCcEEEEecCCcccccCceEEEE
Confidence            45789999999987 678999999999999999999    766    68899999999985432  33333468899999


Q ss_pred             EeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCc
Q 041556           98 STGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTE  134 (143)
Q Consensus        98 ~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~~~~  134 (143)
                      .+++++|+|+|+|++||..||.||.+|+.+..+..+.
T Consensus        82 v~~~~ty~~~Adseee~~~WikAi~~A~~~~~~~~~~  118 (126)
T 1wi1_A           82 VKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPP  118 (126)
T ss_dssp             ECSSCEEEEECSSHHHHHHHHHHHHHHHTCSSCCCCC
T ss_pred             ecCCceEEEEcCCHHHHHHHHHHHHHHhccccCCCCC
Confidence            9998899999999999999999999999876666543

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.94  E-value=1.8e-25  Score=144.11  Aligned_cols=99  Identities=21%  Similarity=0.444  Sum_probs=83.9

Q ss_pred             ccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC--
Q 041556           24 WSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE--  101 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~--  101 (143)
                      ...++++|||+|++ ..+.|++|||||+++.|+||+++.    +..+.+.|+|.+|.+++...  ..++++|.|.++.  
T Consensus         5 ~~~v~k~GwL~K~g-~~k~WkrRWfVLk~~~L~yyk~~~----~~~p~G~I~L~~~~v~~~~~--~~~~~~F~i~~~~~~   77 (130)
T 1v88_A            5 SSGIVMADWLKIRG-TLKSWTKLWCVLKPGVLLIYKTQK----NGQWVGTVLLNACEIIERPS--KKDGFCFKLFHPLEQ   77 (130)
T ss_dssp             SSSCCEEEEEEECC-SSSSCEEEEEEEETTEEEEESCSS----SCCCCEEEECSSCEECCCCT--TTSSCEEEEECTTCC
T ss_pred             CCceEEEeEEEEeC-CCCCceEEEEEEECCEEEEECCCC----CCCceEEEEcCCCEEEECCC--CCCCeEEEEEcCCcc
Confidence            35678999999988 788999999999999999999998    78899999999987654332  2456999998653  


Q ss_pred             ----------------------eEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556          102 ----------------------YTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       102 ----------------------~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                                            +.|+|+|+|++|+++||.||+.++....
T Consensus        78 ~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~~~  127 (130)
T 1v88_A           78 SIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGP  127 (130)
T ss_dssp             CCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTT
T ss_pred             ccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence                                  2488999999999999999999987543

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.94  E-value=9.9e-25  Score=137.28  Aligned_cols=105  Identities=24%  Similarity=0.536  Sum_probs=91.5

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC-eE
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE-YT  103 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~-~~  103 (143)
                      .+++++|||.|+++..+.|++|||||.++.|+||+++.    +..+.+.|+|.++.++....+...++++|.|.+++ +.
T Consensus         3 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~r~   78 (113)
T 1pls_A            3 PKRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKS----DNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQD   78 (113)
T ss_dssp             CCCSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTT----CSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEE
T ss_pred             CCCcEEEEEEEeCCCCCCceEEEEEEECCEEEEEeCCC----CCCcceEEEcCCCEEEEecCCCCCCccEEEEEcCCCCE
Confidence            45789999999998889999999999999999999987    78899999999987765444444778999999875 89


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHhhcCCCC
Q 041556          104 MYFVADTEKEKEEWINSIGRAIVQHSRSVT  133 (143)
Q Consensus       104 ~~~~a~s~~e~~~Wi~al~~~~~~~~~~~~  133 (143)
                      |+|+|+|++|+..|+.+|+.++........
T Consensus        79 ~~l~a~s~~e~~~Wi~ai~~~~~~~~~~~~  108 (113)
T 1pls_A           79 HFFQAAFLEERDAWVRDINKAIKCIEGLEH  108 (113)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhccchhhh
Confidence            999999999999999999999987765543

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.93  E-value=5e-25  Score=144.93  Aligned_cols=100  Identities=13%  Similarity=0.156  Sum_probs=85.6

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEE
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTM  104 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~  104 (143)
                      ..++++|||.|+++..+.|++|||||+++.|+||+++.    +..+.+.|+|.+++++........+.++|.|.++++.|
T Consensus        16 ~pv~keG~L~Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~----d~~~~g~I~L~~~~~~~~~~~~~~~~~~F~I~t~~r~~   91 (149)
T 1x1f_A           16 LPLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKK----SIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEV   91 (149)
T ss_dssp             SCEEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSS----CSSCSEECCCSSCCEEEECCCTTSCCCEEEEECSSCCE
T ss_pred             CCccEEEEEEEeCCCCCCceeEEEEEcCCEEEEEeCCC----ccccCcEEECCCceEEeeccCCCCcCcEEEEEcCCCEE
Confidence            34789999999999889999999999999999999998    67888999999976553221112457899999999999


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          105 YFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       105 ~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +|+|+|.+|+++||.||+.++...
T Consensus        92 ~f~A~s~ee~~eWi~aI~~v~~~~  115 (149)
T 1x1f_A           92 QLKTENTESGEEWRGFILTVTELS  115 (149)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHSS
T ss_pred             EEEcCCHHHHHHHHHHHHHHHccc
Confidence            999999999999999999887743

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.93  E-value=4.4e-24  Score=133.52  Aligned_cols=98  Identities=20%  Similarity=0.375  Sum_probs=85.6

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC-eE
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE-YT  103 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~-~~  103 (143)
                      .++.++|||+|++...+.|++|||||.++.|+||+++.    +..+.+.|+|.++.++...+. ..++++|+|.+++ +.
T Consensus         6 ~~~~~~G~L~K~~~~~~~Wk~RwfvL~~~~L~yyk~~~----~~~~~~~i~L~~~~~~~~~~~-~~~~~~F~i~~~~~~~   80 (109)
T 1wgq_A            6 SGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASE----DVAALESQPLLGFTVTLVKDE-NSESKVFQLLHKGMVF   80 (109)
T ss_dssp             CSCSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTT----CSSCSEEEECSSEEEEECCCS-SCSSSEEEEEETTEEE
T ss_pred             CCCeEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCC----cCccCceEECCCCEEEECCCC-CCCCcEEEEEeCCCeE
Confidence            55789999999998889999999999999999999988    678999999999877655443 2567999999875 67


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHh
Q 041556          104 MYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus       104 ~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      |+|+|+|++|+..|+.+|+.++..
T Consensus        81 ~~~~a~s~~e~~~Wi~al~~a~~~  104 (109)
T 1wgq_A           81 YVFKADDAHSTQRWIDAFQEGTVS  104 (109)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHSC
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999988654

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.93  E-value=2e-24  Score=136.04  Aligned_cols=101  Identities=26%  Similarity=0.419  Sum_probs=88.8

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEE
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTM  104 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~  104 (143)
                      ..++++|||.|++...+.|++|||||.++.|+||+++.    +..+.+.|+|.++..+...++...++++|.|.++++.|
T Consensus         6 ~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~~v~~~~~~~~~~~~F~i~~~~r~~   81 (115)
T 2dn6_A            6 SGVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSED----LKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTF   81 (115)
T ss_dssp             CSCSEEEEEEEECTTSSCEEEEEEEECSSCEEEESSTT----CSSEEEEECCCTTCEEEEECCCTTCCSEEEEECSSCEE
T ss_pred             CCceEEEEEEecCCCCCCcEEeEEEEECCEEEEeCCCC----CcccCcEEEecCcEEEEECCCCCCCeeEEEEEeCCCEE
Confidence            56789999999998889999999999999999999987    67899999999865555544434678999999999999


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556          105 YFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       105 ~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      +|+|+|++|++.|+.+|+.++....
T Consensus        82 ~l~a~s~~e~~~Wi~ai~~~~~~~~  106 (115)
T 2dn6_A           82 EISASDKKKKQEWIQAIHSTIHLLK  106 (115)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999987654

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.92  E-value=6.1e-24  Score=134.26  Aligned_cols=101  Identities=29%  Similarity=0.622  Sum_probs=87.8

Q ss_pred             ccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc-cCCCCceEEEEe---
Q 041556           24 WSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED-LLNKPFAFELST---   99 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~-~~~~~~~f~i~~---   99 (143)
                      ...++++|||.|++...+.|++|||||.++.|+||+++.    +..+.+.|+|.++.++..... ...++++|.|.+   
T Consensus         5 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~   80 (118)
T 1v89_A            5 SSGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEE----DTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASW   80 (118)
T ss_dssp             SSCEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSS----CCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCC
T ss_pred             CCCCcEEEEEEecCCCCCCccEEEEEEECCEEEEEeCCC----CCCceEEEECCCCEEEEcCcCcccCCcceEEEECCcc
Confidence            356789999999998888999999999999999999988    678999999999876544322 235689999988   


Q ss_pred             -----CCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          100 -----GEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       100 -----~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                           +.+.|+|+|+|++|+..|+.+|+.++...
T Consensus        81 ~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~  114 (118)
T 1v89_A           81 DQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSG  114 (118)
T ss_dssp             SSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCC
T ss_pred             ccccCCCcEEEEECCCHHHHHHHHHHHHHHHccC
Confidence                 67899999999999999999999998754

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=99.92  E-value=6.5e-24  Score=135.91  Aligned_cols=103  Identities=31%  Similarity=0.530  Sum_probs=89.1

Q ss_pred             ccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeE
Q 041556           24 WSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYT  103 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~  103 (143)
                      ...++++|||.|+++..+.|++|||||.++.|+||+++.    +..+.+.|+|.++..+..... .+++++|.|.++++.
T Consensus        15 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~~v~~~~~-~~~~~~F~i~~~~r~   89 (126)
T 1fao_A           15 PSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQM----SPEPIRILDLTECSAVQFDYS-QERVNCFCLVFPFRT   89 (126)
T ss_dssp             CCTTCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTT----CSSCSEEEEGGGCCEEEEECS-SSSSSEEEEEETTEE
T ss_pred             CCCccEEEEEEEcCCCCCCcccEEEEEECCEEEEeCCCC----CCCceeEEEccceEEEEeccc-CCCCCEEEEEeCCcE
Confidence            356789999999998888999999999999999999988    688999999999876654332 367899999999999


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHhhcCC
Q 041556          104 MYFVADTEKEKEEWINSIGRAIVQHSRS  131 (143)
Q Consensus       104 ~~~~a~s~~e~~~Wi~al~~~~~~~~~~  131 (143)
                      |+|+|+|++++..|+.+|+.++......
T Consensus        90 ~~l~a~s~~e~~~Wi~al~~~i~~~~~~  117 (126)
T 1fao_A           90 FYLCAKTGVEADEWIKILRWKLSQIRKQ  117 (126)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHTC---
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999875433

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=99.92  E-value=1.1e-23  Score=134.73  Aligned_cols=99  Identities=38%  Similarity=0.744  Sum_probs=86.4

Q ss_pred             ccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC--
Q 041556           24 WSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE--  101 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~--  101 (143)
                      +.+++++|||.|+++..+.|++|||||.++.|+||+++.    +..+.+.|+|.++.++...+  ..++++|.|.+++  
T Consensus         2 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~v~~~~~--~~~~~~f~i~~~~~~   75 (127)
T 1fgy_A            2 FFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT----DKEPRGIIPLENLSIREVLD--PRKPNCFELYNPSHK   75 (127)
T ss_dssp             CSSCSEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTT----CSSCSEEEECTTCEEEEECC--SSCSSEEEEECSSST
T ss_pred             CCCCceEeEEEEECCCCCCeEEEEEEEECCEEEEeCCCC----CCCcceEEECCceEEEEccC--CCCCceEEEecCCcc
Confidence            467899999999998889999999999999999999987    67899999999986554433  2678999998653  


Q ss_pred             --------------------eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          102 --------------------YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       102 --------------------~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                                          +.|+|+|+|++|++.|+.+|+.++...
T Consensus        76 ~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~  122 (127)
T 1fgy_A           76 GQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD  122 (127)
T ss_dssp             TCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhccC
Confidence                                689999999999999999999998765

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.92  E-value=4.1e-24  Score=135.83  Aligned_cols=101  Identities=21%  Similarity=0.406  Sum_probs=87.4

Q ss_pred             ccccceEEEEEeeCC--CCCCeeeEEEEEECC--eEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEe
Q 041556           24 WSNPERSGWLTKQGD--YIKTWRRRWFILKQG--KLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELST   99 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~--~~~~w~~r~~vL~~~--~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~   99 (143)
                      ..++.++|||.|+++  ..+.|++|||||.++  .|+||+++.    +..+.+.|+|.++..+....   .++++|.|.+
T Consensus         5 ~~~~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~----~~~~~g~I~L~~~~~~~~~~---~~~~~F~i~~   77 (119)
T 2dhk_A            5 SSGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQ----DANPLDSIDLSSAVFDCKAD---AEEGIFEIKT   77 (119)
T ss_dssp             CSCCCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTT----CCSCSEEEEGGGCEEEECTT---GGGCEEEEEC
T ss_pred             CCCCcEEEEEEecCCCCCCCCceeEEEEEECCccEEEEECCCC----CcccccEEECCCCEEEecCC---CCCCEEEEEe
Confidence            356789999999986  578999999999998  999999988    67899999999986664322   4578999999


Q ss_pred             CCeEEEEEcCCHHHHHHHHHHHHHHHHhhcCC
Q 041556          100 GEYTMYFVADTEKEKEEWINSIGRAIVQHSRS  131 (143)
Q Consensus       100 ~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~  131 (143)
                      +++.|+|+|+|++|++.||.+|+.++......
T Consensus        78 ~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~  109 (119)
T 2dhk_A           78 PSRVITLKAATKQAMLYWLQQLQMKRWEFHNS  109 (119)
T ss_dssp             SSCCEEEECSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999998765433

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.92  E-value=4.4e-24  Score=134.14  Aligned_cols=99  Identities=18%  Similarity=0.310  Sum_probs=83.6

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECC---eEEEEccCCCCCCCCCccEEEeCCCeEEeecC-cccCCCCceEEEEeC
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQG---KLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA-EDLLNKPFAFELSTG  100 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~---~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~-~~~~~~~~~f~i~~~  100 (143)
                      .+.+++|||++++. .+.|++|||||+++   .|+||++++    +..+.+.|+|.+|.+.... .+...++++|+|..+
T Consensus         6 ~~~~~~G~L~k~~~-~~~WkkrWfVL~~~~~~~Ly~Yk~~~----d~~p~g~I~L~g~~V~~~~~~~~~~~~~~Fki~~~   80 (112)
T 2coc_A            6 SGSLLCGPLRLSES-GETWSEVWAAIPMSDPQVLHLQGGSQ----DGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWA   80 (112)
T ss_dssp             SSSSSEEEEEEESS-SSCEEEEEEECCTTCTTCEEEECCTT----CSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEET
T ss_pred             CCceEEEEEEecCC-CCCceEEEEEEECCCccEEEEECCCC----ccCcceEEEcCCCEEEecCcccccCCCCEEEEecC
Confidence            45678899999765 78999999999985   799999998    7789999999999665322 222357899999999


Q ss_pred             CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          101 EYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       101 ~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +++|+|+|+|++++++||.+|+.|+...
T Consensus        81 ~~~y~f~A~s~e~~~~Wl~al~~A~~~~  108 (112)
T 2coc_A           81 KQSWYLSASSAELQQQWLETLSTAAHSG  108 (112)
T ss_dssp             TEEEEEEESSHHHHHHHHHHHHHHHSCC
T ss_pred             CeEEEEEcCCHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999886643

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.92  E-value=4.4e-24  Score=134.89  Aligned_cols=100  Identities=22%  Similarity=0.495  Sum_probs=86.3

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEE--CCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc------cCCCCceEE
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILK--QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED------LLNKPFAFE   96 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~--~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~------~~~~~~~f~   96 (143)
                      ..++++|||.|+++..+.|++|||||.  ++.|+||+++.    +..+.+.|+|..+..+.....      ...++++|.
T Consensus         6 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~----~~~~~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~   81 (117)
T 1v5u_A            6 SGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRM----DTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFD   81 (117)
T ss_dssp             CSSSEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSS----CSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEE
T ss_pred             CCccEEEEEEecCCCCCCceeeEEEEECCCCEEEEeecCC----CCccceEEEccCcEEEeecCccccccccCCCCeEEE
Confidence            567899999999988899999999999  88999999988    678999999999876654331      134569999


Q ss_pred             EEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           97 LSTGEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        97 i~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      |.++++.|+|+|+|+++++.|+.+|+.++...
T Consensus        82 i~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~  113 (117)
T 1v5u_A           82 VKTTRRVYNFCAQDVPSAQQWVDRIQSCLSSG  113 (117)
T ss_dssp             EEESSCEEEEECSSHHHHHHHHHHHHTTCCCC
T ss_pred             EECCCceEEEECCCHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999998876543

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.92  E-value=1.5e-23  Score=132.25  Aligned_cols=96  Identities=26%  Similarity=0.506  Sum_probs=85.5

Q ss_pred             cccceEEEEEeeCC-CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeE
Q 041556           25 SNPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYT  103 (143)
Q Consensus        25 ~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~  103 (143)
                      ..++++|||.|++. ..+.|++|||||.++.|+||+++.    +..+.+.|+|..+..+...+     +++|.|.++++.
T Consensus         6 ~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~----~~~~~g~i~l~~~~~v~~~~-----~~~F~i~~~~r~   76 (115)
T 2cod_A            6 SGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEK----EMYSKGIIPLSAISTVRVQG-----DNKFEVVTTQRT   76 (115)
T ss_dssp             SCCCEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSC----CSSCCCEEETTTEEEEEEET-----TTEEEEEESSCC
T ss_pred             CCccEEEEEEEcCCCCCCCCceEEEEEECCEEEEEcCCC----CcccCCEEECCcceEEEeCC-----CCEEEEEeCCcE
Confidence            56789999999987 678999999999999999999988    67899999999986665432     699999999999


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556          104 MYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       104 ~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      |+|+|++++|++.|+.+|+.++....
T Consensus        77 ~~l~a~s~~e~~~Wi~~l~~~~~~~~  102 (115)
T 2cod_A           77 FVFRVEKEEERNDWISILLNALKSQS  102 (115)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999999999986554

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=99.92  E-value=6.2e-24  Score=133.41  Aligned_cols=97  Identities=25%  Similarity=0.417  Sum_probs=82.3

Q ss_pred             ccceEEEEEee-CCCCC-CeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC--
Q 041556           26 NPERSGWLTKQ-GDYIK-TWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE--  101 (143)
Q Consensus        26 ~~~~~G~L~k~-~~~~~-~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~--  101 (143)
                      .++++|||.++ ++.++ .|++|||||++.+|+||++..    ++.+.++|+|.+..+.+.......++|+|.|.+++  
T Consensus        11 ~VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~----eke~~G~IpL~~~~vr~v~~~~~~rk~~F~l~~~d~r   86 (125)
T 1dyn_A           11 LVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDE----EKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQR   86 (125)
T ss_dssp             CEEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTT----CSCEEEEEECTTEEEEECCSCSSSSCEEEEEEETTSS
T ss_pred             ceEEEEEEEEecCccccCCceeeEEEEeccceeeecCCc----ccccceEEECCCceEeccCCCCCCCceEEEEECCCCc
Confidence            37999999995 55566 599999999999999999999    79999999999986655444434789999999864  


Q ss_pred             ------eEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556          102 ------YTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       102 ------~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                            ++|.|+|+|++|+.+|+.||.+|.-
T Consensus        87 ~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra~v  117 (125)
T 1dyn_A           87 NVYKDYRQLELACETQEEVDSWKASFLRAGV  117 (125)
T ss_dssp             CSSTTCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred             cccccceEEEEeCCCHHHHHHHHHHHHhCcc
Confidence                  3899999999999999999977643

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=99.91  E-value=2.2e-23  Score=133.97  Aligned_cols=106  Identities=28%  Similarity=0.459  Sum_probs=88.2

Q ss_pred             ccccccccceEEEEEeeCCCCCCeeeEEEEEECC--eEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc----cCCCCc
Q 041556           20 GIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQG--KLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED----LLNKPF   93 (143)
Q Consensus        20 ~~~~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~--~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~----~~~~~~   93 (143)
                      ..+....++++|||.|++...+.|++|||||.++  .|+||+++.    +..+.+.|+|.++.+......    ...+++
T Consensus        11 ~~~~~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~----~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~   86 (129)
T 1x05_A           11 KEEFRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAG----AEDPLGAIHLRGCVVTSVESNSNGRKSEEEN   86 (129)
T ss_dssp             CSTTCSEEEEEEEEEECCSSCCCCEEEEEEEEETTTEEEEECSSC----CSSCSEEEECTTCEEEECCCCCCSSSCSSCS
T ss_pred             cccccCCceEEEEEEecCCCCCCCeeEEEEEeCCCCEEEEECCCC----CCcceeEEEccCCEEEEccCCccccccCCCe
Confidence            3455677899999999998888999999999976  899999887    688999999999865543322    123789


Q ss_pred             eEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556           94 AFELSTGE-YTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus        94 ~f~i~~~~-~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      +|.|.+++ +.|+|+|+|++|++.|+.||+.++....
T Consensus        87 ~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~~  123 (129)
T 1x05_A           87 LFEIITADEVHYFLQAATPKERTEWIKAIQMASRTGK  123 (129)
T ss_dssp             EEEEECTTCCCCEEECSSHHHHHHHHHHHHHHHTCCS
T ss_pred             EEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHccC
Confidence            99999875 6799999999999999999999987543

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=99.91  E-value=7.7e-24  Score=129.15  Aligned_cols=92  Identities=26%  Similarity=0.539  Sum_probs=79.7

Q ss_pred             cceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEE
Q 041556           27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYF  106 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~  106 (143)
                      +.++|||+|++...+.|++|||||.++.|+||+++.+.  ...+.+.++|.++.++...    ..+++|.|.++++.|+|
T Consensus         1 V~k~G~L~K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~--~~~~~~~i~l~~~~~~~~~----~~~~~F~i~~~~r~~~l   74 (94)
T 2rsg_A            1 VERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDET--EYGCRGSICLSKAVITPHD----FDECRFDISVNDSVWYL   74 (94)
T ss_dssp             CCEEEEEEEESSSTTCEEEEEEEEETTEEEEESSTTGG--GTCCSEEEETTTCEEEECS----SCSSEEEEEETTEEEEE
T ss_pred             CCEEEEEEEeCCCCCCceEEEEEEECCEEEEEEecccc--cccceeeEecceeeeecCc----ccceeEEEEeCCeEEEE
Confidence            46899999999988999999999999999999987631  3458899999997554322    46799999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHH
Q 041556          107 VADTEKEKEEWINSIGRA  124 (143)
Q Consensus       107 ~a~s~~e~~~Wi~al~~~  124 (143)
                      +|+|++|+++|+.||++|
T Consensus        75 ~A~s~~e~~~Wi~aLq~A   92 (94)
T 2rsg_A           75 RAQDPDHRQQWIDAIEQH   92 (94)
T ss_dssp             ECCSSCCTHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHhh
Confidence            999999999999999876

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=99.91  E-value=5.3e-23  Score=128.36  Aligned_cols=98  Identities=29%  Similarity=0.478  Sum_probs=82.1

Q ss_pred             ccccceEEEEEeeCCCCCCeeeEEEEEECC--eEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc----cCCCCceEEE
Q 041556           24 WSNPERSGWLTKQGDYIKTWRRRWFILKQG--KLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED----LLNKPFAFEL   97 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~--~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~----~~~~~~~f~i   97 (143)
                      ..+++++|||.|+++..+.|++|||||.++  .|+||+++.    +..+.+.|+|.++.+......    ..+++++|.|
T Consensus         4 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~----~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i   79 (109)
T 2i5f_A            4 TGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAG----AEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEI   79 (109)
T ss_dssp             CCCEEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTS----CSSCSEEEECTTCEEEEECC--------CCSEEEE
T ss_pred             cCceeEEEEEEEcCCCCCCceEEEEEEeCCCcEEEEECCCC----CCCccEEEECCCCEEEEccCCcccccCCCceEEEE
Confidence            356789999999998888999999999986  999999887    688999999999865443322    1237899999


Q ss_pred             EeCC-eEEEEEcCCHHHHHHHHHHHHHHH
Q 041556           98 STGE-YTMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus        98 ~~~~-~~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      .+++ +.|+|+|+|++|+..|+.||+.++
T Consensus        80 ~~~~~~~~~l~a~s~~e~~~Wi~ai~~~~  108 (109)
T 2i5f_A           80 ITADEVHYFLQAATPKERTEWIKAIQMAS  108 (109)
T ss_dssp             ECTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EeCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence            9885 669999999999999999999875

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=99.91  E-value=1.6e-23  Score=134.08  Aligned_cols=105  Identities=23%  Similarity=0.317  Sum_probs=82.1

Q ss_pred             ccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCC-----CCCCCCccEEEeCCCeEEeecCcccCCCCceEEEE
Q 041556           24 WSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHN-----ITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELS   98 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~-----~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~   98 (143)
                      +..+.++|||+|++...+.|++|||||+++.|+||+++..     ......+.|.|+|.+|.+....++...++++|+|.
T Consensus         9 ~~~~~k~G~L~K~g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~~~~~k~~~F~I~   88 (124)
T 2w2x_D            9 KDEHKQQGELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGKNQKSFVFILE   88 (124)
T ss_dssp             ----CCEEEEEEEETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTTCBTTBSEEEEEE
T ss_pred             hhhcceeEEEEEECCCCCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEEEccCCcCCCCEEEEEE
Confidence            4678999999999988899999999999999999997431     11124468999999997655544434688999998


Q ss_pred             eCC---eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           99 TGE---YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        99 ~~~---~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +++   +.|+|+|+|++|+.+||.||++++..+
T Consensus        89 ~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~~  121 (124)
T 2w2x_D           89 PKQQGDPPVEFATDKVEELFEWFQSIREITWKI  121 (124)
T ss_dssp             ECC--CCCEEEEECCCHHHHHHHHHHHHHHC--
T ss_pred             CCCCCCceEEEEECCHHHHHHHHHHHHHHHHhh
Confidence            763   679999999999999999999987654

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=99.91  E-value=3e-23  Score=132.45  Aligned_cols=103  Identities=31%  Similarity=0.555  Sum_probs=88.6

Q ss_pred             ccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc--ccCCCCceEEEEeCC
Q 041556           24 WSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE--DLLNKPFAFELSTGE  101 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~~f~i~~~~  101 (143)
                      ...++++|||+|++...+.|++|||||.++.|+||+++.    +..+.+.|+|.++..+....  +...++++|.|.+++
T Consensus        11 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~~   86 (125)
T 1eaz_A           11 DSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSEL----EKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS   86 (125)
T ss_dssp             -CCCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTT----CSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSS
T ss_pred             CCCccEEEEEEEeCCCCCCcceEEEEEeCCEEEEEcCCC----CCcceeEEEcccceEEeeccccccCCcCCEEEEEeCC
Confidence            356789999999998888999999999999999999988    67899999999976554422  223578999999999


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHHhhcC
Q 041556          102 YTMYFVADTEKEKEEWINSIGRAIVQHSR  130 (143)
Q Consensus       102 ~~~~~~a~s~~e~~~Wi~al~~~~~~~~~  130 (143)
                      +.|+|+|+|++|+..|+.+|+.++.....
T Consensus        87 r~~~l~a~s~~e~~~W~~al~~~i~~~~~  115 (125)
T 1eaz_A           87 RTFYVQADSPEEMHSWIKAVSGAIVAQRG  115 (125)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHHHTC-
T ss_pred             cEEEEEcCCHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999887643

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=99.91  E-value=9.7e-23  Score=130.62  Aligned_cols=101  Identities=31%  Similarity=0.561  Sum_probs=85.6

Q ss_pred             ccccceEEEEEeeCC-CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc-ccCCCCceEEEEeCC
Q 041556           24 WSNPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE-DLLNKPFAFELSTGE  101 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~-~~~~~~~~f~i~~~~  101 (143)
                      ...++++|||.|++. ..+.|++|||||.++.|+||+++.    +..+.+.|+|.++.+..... +...++++|.|.+++
T Consensus        18 ~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~   93 (128)
T 2dkp_A           18 NAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEK----EEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPN   93 (128)
T ss_dssp             TSCCCEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTT----CCSEEEEECGGGSEEEECCGGGCCSSCSEEEEECSS
T ss_pred             CCCcEEEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCC----CcccceEEEcCceEEEEcCCcccCCCCeEEEEEcCC
Confidence            355789999999987 678999999999999999999988    67899999999875544332 223678999999875


Q ss_pred             -eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          102 -YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       102 -~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                       +.|+|+|+|++|++.|+.+|+.++...
T Consensus        94 ~r~~~l~a~s~~e~~~Wi~al~~a~~~~  121 (128)
T 2dkp_A           94 MRTYYFCTDTGKEMELWMKAMLDAALVQ  121 (128)
T ss_dssp             SCCEEEECSSHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence             999999999999999999999987643

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=99.90  E-value=3.4e-23  Score=128.83  Aligned_cols=99  Identities=19%  Similarity=0.475  Sum_probs=83.9

Q ss_pred             ccceEEEEEeeCCCC----CCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecC--cccCCCCceEEEEe
Q 041556           26 NPERSGWLTKQGDYI----KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA--EDLLNKPFAFELST   99 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~----~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~--~~~~~~~~~f~i~~   99 (143)
                      +++++|||.|++...    +.|++|||||.++.|+||+++.    +..+.+.|+|.++.+....  .....++++|.|.+
T Consensus         2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~   77 (108)
T 1u5d_A            2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEK----SKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTS   77 (108)
T ss_dssp             CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTT----CSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEEC
T ss_pred             CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCC----CCCCCEEEEecceEEEeCCccccccCCcceEEEEc
Confidence            468999999987432    7899999999999999999988    6789999999998654432  12235689999998


Q ss_pred             CC-eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          100 GE-YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       100 ~~-~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      ++ +.++|+|+|++|+..|+.+|+.++...
T Consensus        78 ~~~r~~~l~a~s~~e~~~Wi~ai~~~i~~l  107 (108)
T 1u5d_A           78 QDRRTYEFTATSPAEARDWVDQISFLLKDL  107 (108)
T ss_dssp             SSSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            87 999999999999999999999998754

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=1.4e-22  Score=127.88  Aligned_cols=101  Identities=30%  Similarity=0.614  Sum_probs=84.8

Q ss_pred             cccceEEEEEeeC-CCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecC-cccCCCCceEEEEeC-C
Q 041556           25 SNPERSGWLTKQG-DYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA-EDLLNKPFAFELSTG-E  101 (143)
Q Consensus        25 ~~~~~~G~L~k~~-~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~-~~~~~~~~~f~i~~~-~  101 (143)
                      ..++++|||.|++ ...+.|++|||||.++.|+||+++.    +..+.+.|+|.++.+.... .+...++++|.|..+ +
T Consensus         9 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~   84 (117)
T 2d9y_A            9 APVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEK----EESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGV   84 (117)
T ss_dssp             CCCCEEEEEEEECTTSSSCEEEEEEEEETTEEEEESSTT----CCSCCEEEECSSCEEEECCTTTTCCCSSEEEEECSSS
T ss_pred             CCeeEEEEEEEeCCCCCCCceEEEEEECCCEEEEECCCC----CCCcCCEEEeCCeEEEEcCccccCCCccEEEEEcCCC
Confidence            4578999999998 4678999999999999999999988    6789999999998654332 233467899999754 6


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556          102 YTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       102 ~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      +.|+|+|+|++|+..|+.+|+.++....
T Consensus        85 r~~~l~a~s~~e~~~Wi~al~~~~~~~~  112 (117)
T 2d9y_A           85 RTYFFSAESPEEQEAWIQAMGEAARVQS  112 (117)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTCCTT
T ss_pred             cEEEEEcCCHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999998876443

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=99.90  E-value=1.3e-22  Score=135.63  Aligned_cols=109  Identities=16%  Similarity=0.310  Sum_probs=88.7

Q ss_pred             cccccccceEEEEEeeCCC-----CCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc-----cCC
Q 041556           21 IEFWSNPERSGWLTKQGDY-----IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED-----LLN   90 (143)
Q Consensus        21 ~~~~~~~~~~G~L~k~~~~-----~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~-----~~~   90 (143)
                      +.+..+++++|||.|++..     .+.|++|||||+++.|+||+++.+   ...+.+.|+|..+..++....     ...
T Consensus         9 ~~m~~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~---~~~~~G~I~L~~~~~v~~~~~~~~~~~~~   85 (164)
T 2lul_A            9 SHMNFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAE---KKYRKGFIDVSKIKCVEIVKNDDGVIPCQ   85 (164)
T ss_dssp             CCCCSSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSS---SCCCCCEEEGGGCCEEEECCCCSSSCCSS
T ss_pred             ccCCCCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCc---ccccccEEEEeeeEEEEeccccccCcccc
Confidence            4455688999999998753     246999999999999999998762   356789999998765544322     134


Q ss_pred             CCceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhcCCC
Q 041556           91 KPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSV  132 (143)
Q Consensus        91 ~~~~f~i~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~~  132 (143)
                      .+++|+|.+++++|||+|+|++|+++||.||++++.......
T Consensus        86 ~~~~f~i~t~~rt~~l~A~s~~e~~~Wi~aL~~~i~~n~~~~  127 (164)
T 2lul_A           86 NKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIKNNNNIM  127 (164)
T ss_dssp             SCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHTTCSCCC
T ss_pred             cceeEEEecCCcEEEEECCCHHHHHHHHHHHHHHHHHChhhh
Confidence            579999999999999999999999999999999998765443

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.90  E-value=7.6e-23  Score=131.19  Aligned_cols=103  Identities=19%  Similarity=0.416  Sum_probs=81.5

Q ss_pred             cccceEEEEEeeC-CCCCCeeeEEEEEE---CCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc--ccCCCCceEEEE
Q 041556           25 SNPERSGWLTKQG-DYIKTWRRRWFILK---QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE--DLLNKPFAFELS   98 (143)
Q Consensus        25 ~~~~~~G~L~k~~-~~~~~w~~r~~vL~---~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~~f~i~   98 (143)
                      .+..++|||.|++ ...+.|++|||||.   +..|+||+++.+...+..+.|.|+|..+..|....  ....++++|.|.
T Consensus        13 ~~~~~~G~L~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~~~~~~~~F~i~   92 (126)
T 1v5p_A           13 RQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVIN   92 (126)
T ss_dssp             CCCCEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEE
T ss_pred             CCCceEEEEEEeCCCCCCCccceEEEEecCCCCEEEEECCCCCCCCCceeeEEEECCCccEEecCCcccCCCCCEEEEEE
Confidence            3456899999998 56889999999999   55777778842211267899999999865554432  223567999999


Q ss_pred             eCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556           99 TGEYTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        99 ~~~~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      ++.++|+|+|+|++|+++||.||+.++..
T Consensus        93 t~~r~y~l~A~s~~e~~~Wi~al~~a~~~  121 (126)
T 1v5p_A           93 ALSQRYFLQANDQKDLKDWVEALNQASKS  121 (126)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHHHHHTTTT
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999988654

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.90  E-value=6.9e-23  Score=134.86  Aligned_cols=100  Identities=30%  Similarity=0.554  Sum_probs=84.5

Q ss_pred             ccccceEEEEEeeCC------CCCCeeeEEEEEECC-----eEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCC
Q 041556           24 WSNPERSGWLTKQGD------YIKTWRRRWFILKQG-----KLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKP   92 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~------~~~~w~~r~~vL~~~-----~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~   92 (143)
                      ...++++|||.|++.      ..+.|++|||||.++     .|+||++...   ...+.+.|+|.+|.++....  ..++
T Consensus        15 ~~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~---~~~~~g~I~L~~~~~~~~~~--~~~~   89 (150)
T 1wg7_A           15 KGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKI---SKEPKGSIFLDSCMGVVQNN--KVRR   89 (150)
T ss_dssp             SCCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCC---SSCCSEEECTTTCCEECCCC--SSCT
T ss_pred             CCCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCC---CCCcCcEEecccCEEEecCC--CCCc
Confidence            466889999999973      457999999999987     9999998762   46799999999986664332  3678


Q ss_pred             ceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           93 FAFELSTGE-YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        93 ~~f~i~~~~-~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      ++|.|.+++ +.|+|+|++++|+..|+.+|+.++...
T Consensus        90 ~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~~~  126 (150)
T 1wg7_A           90 FAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLN  126 (150)
T ss_dssp             TEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence            999999985 899999999999999999999997643

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=99.90  E-value=1e-22  Score=128.10  Aligned_cols=97  Identities=19%  Similarity=0.372  Sum_probs=78.9

Q ss_pred             ceEEEEEeeCC----CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEe-ecCcccCCCCceEEEEeC-C
Q 041556           28 ERSGWLTKQGD----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTV-RGAEDLLNKPFAFELSTG-E  101 (143)
Q Consensus        28 ~~~G~L~k~~~----~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~-~~~~~~~~~~~~f~i~~~-~  101 (143)
                      .++|||.++++    ..+.|++|||||+++.|+||+++.    +..+.+.|+|.++.+. ....+...++|+|+|.++ .
T Consensus         1 tkeG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~----~~~p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~   76 (112)
T 3cxb_B            1 TKEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRT----DVIPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDR   76 (112)
T ss_dssp             CEEEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSSS----CCSCSEEEETTC-CEEEEEECCCSSCTTEEEEEETTS
T ss_pred             CceEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCCC----CCCccceEEecCCEEEeeeccCCCCCCeEEEEEcCCC
Confidence            37999997643    468999999999999999999988    6788999999975322 112233478999999865 6


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          102 YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       102 ~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +.|+|+|+|++||++||.+|+.++...
T Consensus        77 ~~y~f~A~s~ee~~~Wi~ai~~~~~~~  103 (112)
T 3cxb_B           77 PCLELSAESEAEMAEWMQHLCQAVSKG  103 (112)
T ss_dssp             CCEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHHhhcc
Confidence            799999999999999999999987754

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=99.90  E-value=2.8e-23  Score=139.44  Aligned_cols=104  Identities=18%  Similarity=0.326  Sum_probs=82.7

Q ss_pred             ccceEEEEEeeCCC-----CCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecC---ccc-CCC-----
Q 041556           26 NPERSGWLTKQGDY-----IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA---EDL-LNK-----   91 (143)
Q Consensus        26 ~~~~~G~L~k~~~~-----~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~---~~~-~~~-----   91 (143)
                      .++++|||.|++..     .+.|++|||||+++.|+||+++.+...+..+.|.|+|.++..++..   ++. ..+     
T Consensus         2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~   81 (169)
T 1btk_A            2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRR   81 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---
T ss_pred             ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccCCCCceeeEEECcceEEEEeccCCCCcchhcccccc
Confidence            46899999998642     4689999999999999999983110015789999999998666544   221 112     


Q ss_pred             ----------------CceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556           92 ----------------PFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus        92 ----------------~~~f~i~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                                      +++|+|.+++++|||+|+|++|+++||.||+.++....
T Consensus        82 ~~~~~~~~~~~i~~~~~~~F~I~t~~rt~yl~A~s~~E~~eWi~aI~~~i~~n~  135 (169)
T 1btk_A           82 GEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIRYNS  135 (169)
T ss_dssp             ------CCTTHHHHCCCEEEEEEETTCCEEEEESCHHHHHHHHHHHHHHHTTCS
T ss_pred             cCcccccccccccccccccEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHHHCc
Confidence                            28999999999999999999999999999999988654

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=99.90  E-value=2e-22  Score=132.51  Aligned_cols=106  Identities=16%  Similarity=0.327  Sum_probs=86.0

Q ss_pred             cccccccceEEEEEeeCCC----CCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc--ccCCCCce
Q 041556           21 IEFWSNPERSGWLTKQGDY----IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE--DLLNKPFA   94 (143)
Q Consensus        21 ~~~~~~~~~~G~L~k~~~~----~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~~   94 (143)
                      ...+.+++++|||.|++..    .+.|++|||||.++.|+||+++.    ...+.+.|+|.++.++....  ...+++++
T Consensus        11 ~~~~~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~----~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~   86 (148)
T 1u5f_A           11 AQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDK----DKQQKGEFAIDGYDVRMNNTLRKDGKKDCC   86 (148)
T ss_dssp             GGGCSSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTT----CSSCSEEEECTTCEEEECTTSCSSTTGGGE
T ss_pred             hhhCCCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCC----CcccceEEEcCCcEEEECCCcccCCCCccE
Confidence            3345788999999999853    36999999999999999999988    67899999999986554321  12355799


Q ss_pred             EEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhhcC
Q 041556           95 FELSTGE-YTMYFVADTEKEKEEWINSIGRAIVQHSR  130 (143)
Q Consensus        95 f~i~~~~-~~~~~~a~s~~e~~~Wi~al~~~~~~~~~  130 (143)
                      |.|.+++ +.|+|+|+|++++..|+.+|+.++.....
T Consensus        87 F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~  123 (148)
T 1u5f_A           87 FEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLGS  123 (148)
T ss_dssp             EEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC----
T ss_pred             EEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence            9999886 89999999999999999999999876543

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.90  E-value=1.8e-22  Score=130.16  Aligned_cols=100  Identities=18%  Similarity=0.381  Sum_probs=81.1

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEE-ECCeEEEEccCCCCCCCCCccEEEeCCC-eEEee-------c-CcccCCCCce
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFIL-KQGKLFWFKDSHNITPGSTPRGVIPVGT-CLTVR-------G-AEDLLNKPFA   94 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL-~~~~l~~y~~~~~~~~~~~~~~~i~L~~-~~~~~-------~-~~~~~~~~~~   94 (143)
                      ..++++|||+|++...+.|++||||| .++.|+||+++.    +..+.+.|.+.. +..+.       . .++...++++
T Consensus         6 ~~v~~~G~L~K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~----~~~~~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~~~~   81 (130)
T 2d9v_A            6 SGLVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDET----AQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGL   81 (130)
T ss_dssp             CCEEEEEEEEEECSSSCCEEEEEEEEETTTEEEEESSSS----TTSEEEEEECTTTEEEEEEGGGCSSCCCCSSCCTTTE
T ss_pred             CceeEEEEEEeecCccCCceeeEEEEccCCEEEEEeCCC----CCCcCceEecccceeEEeccccccccCCCCCCCcCcE
Confidence            45789999999998889999999999 899999999987    567888887763 32221       1 1122356899


Q ss_pred             EEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           95 FELSTG-EYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        95 f~i~~~-~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      |+|.++ +++|+|+|+|++|+++||.||+.++...
T Consensus        82 F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~~~  116 (130)
T 2d9v_A           82 LTVNLREGSRLHLCAETRDDAIAWKTALMEANSTP  116 (130)
T ss_dssp             EEEEETTSCEEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred             EEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHcCC
Confidence            999985 5899999999999999999999997643

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=99.90  E-value=1.9e-22  Score=129.86  Aligned_cols=103  Identities=19%  Similarity=0.403  Sum_probs=81.7

Q ss_pred             cccceEEEEEee----CC--CCCCeeeEEEEEECCeEEEEccCCCCC-------CCCCccEEEeCCCeEEeecCcccCCC
Q 041556           25 SNPERSGWLTKQ----GD--YIKTWRRRWFILKQGKLFWFKDSHNIT-------PGSTPRGVIPVGTCLTVRGAEDLLNK   91 (143)
Q Consensus        25 ~~~~~~G~L~k~----~~--~~~~w~~r~~vL~~~~l~~y~~~~~~~-------~~~~~~~~i~L~~~~~~~~~~~~~~~   91 (143)
                      ..+.++|||.++    ++  ..+.|++|||||.++.|+||+++....       ....|.+.|+|.+|.+.. ..+..++
T Consensus        10 ~~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~-~~~~~kr   88 (129)
T 2p0d_A           10 HEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAH-GRHLSSR   88 (129)
T ss_dssp             CSEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEE-CTTSCSS
T ss_pred             cceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEE-CCCCCCC
Confidence            456899999985    23  237999999999999999999984210       145789999999986543 4444578


Q ss_pred             CceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           92 PFAFELSTGE-YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        92 ~~~f~i~~~~-~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +++|+|.+++ +.|+|+|+|++|+++||.||+.++...
T Consensus        89 ~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~~  126 (129)
T 2p0d_A           89 RNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIERL  126 (129)
T ss_dssp             SSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            8999999874 789999999999999999999998764

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.90  E-value=4.3e-23  Score=131.67  Aligned_cols=106  Identities=20%  Similarity=0.374  Sum_probs=82.8

Q ss_pred             ccccceEEEEEeeCCC--------CCCeeeEEEEEECCeEEEEccCCCCCCCC--CccEEEeCCCeEEeecCcccCCCCc
Q 041556           24 WSNPERSGWLTKQGDY--------IKTWRRRWFILKQGKLFWFKDSHNITPGS--TPRGVIPVGTCLTVRGAEDLLNKPF   93 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~--------~~~w~~r~~vL~~~~l~~y~~~~~~~~~~--~~~~~i~L~~~~~~~~~~~~~~~~~   93 (143)
                      ...+.++|||.+++..        .+.|++|||||+++.|+||+++.+.....  .+...|+|.++. +....+..+++|
T Consensus         5 ~~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~-~~~~~~~~~r~~   83 (123)
T 1wjm_A            5 SSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQ-GSVAFDYRKRKH   83 (123)
T ss_dssp             CCCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCE-EEECTTCSSCSS
T ss_pred             CCCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcE-EeecccccCCCC
Confidence            3567899999997642        67999999999999999999876311111  234578888874 334444457899


Q ss_pred             eEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhhcC
Q 041556           94 AFELSTGE-YTMYFVADTEKEKEEWINSIGRAIVQHSR  130 (143)
Q Consensus        94 ~f~i~~~~-~~~~~~a~s~~e~~~Wi~al~~~~~~~~~  130 (143)
                      +|.|.+++ +.|+|+|+|++|+++||.||+.++....+
T Consensus        84 ~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~~~~  121 (123)
T 1wjm_A           84 VFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGPS  121 (123)
T ss_dssp             EEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHCCC
T ss_pred             EEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHHhccCC
Confidence            99999775 89999999999999999999999886543

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=5.5e-22  Score=125.04  Aligned_cols=100  Identities=23%  Similarity=0.357  Sum_probs=82.6

Q ss_pred             cccceEEEEEeeCCCC-CCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeE
Q 041556           25 SNPERSGWLTKQGDYI-KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYT  103 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~-~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~  103 (143)
                      .+++++|||.|++... +.|++|||||.++.|+||+++.    . .+.+.+.+..+.+ ...+   .++++|.|.++++.
T Consensus         8 ~~~~~~G~L~K~~~~~~k~WkkR~fvL~~~~L~yyk~~~----~-~~~~~i~l~~~~v-~~~~---~~~~~F~I~~~~r~   78 (114)
T 2da0_A            8 YGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATS----N-RQPAKLNLLTCQV-KPNA---EDKKSFDLISHNRT   78 (114)
T ss_dssp             CCSCEEEEEEEECSSSCCCEEEEEEEEETTEEEECCSSC----C-SCCEEEETTTSEE-EECS---SSSSCEEEEETTEE
T ss_pred             CCccEEEEEEEeCCCCCCCceeEEEEEeCCEEEEEcCCC----C-CCCCEEEeeeeEE-EECC---CCCCEEEEEcCCcE
Confidence            5678999999998865 8999999999999999999976    3 4556666666643 3322   46789999999999


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHhhcCCCC
Q 041556          104 MYFVADTEKEKEEWINSIGRAIVQHSRSVT  133 (143)
Q Consensus       104 ~~~~a~s~~e~~~Wi~al~~~~~~~~~~~~  133 (143)
                      |+|+|+|++|+..||.||+.++........
T Consensus        79 ~~l~a~s~~e~~~Wi~al~~~~~~~~~~~~  108 (114)
T 2da0_A           79 YHFQAEDEQDYVAWISVLTNSKEEALTMAF  108 (114)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             EEEEcCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999887655443

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=99.90  E-value=4.9e-23  Score=129.29  Aligned_cols=98  Identities=19%  Similarity=0.406  Sum_probs=79.9

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEE-ECCeEEEEccCCCCCCCCCccEEEeCCCeE-------Eeec--CcccCCCCce
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFIL-KQGKLFWFKDSHNITPGSTPRGVIPVGTCL-------TVRG--AEDLLNKPFA   94 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL-~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~-------~~~~--~~~~~~~~~~   94 (143)
                      ..++++|||.|+++..+.|++||||| .++.|+||+++.    +..+.+.|+|....       .+..  .++...++++
T Consensus         3 ~~~~~~G~L~K~g~~~k~WkkR~fvL~~~~~L~yyk~~~----~~~~~g~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~   78 (112)
T 3aj4_A            3 MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQT----RQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCM   78 (112)
T ss_dssp             CSCSEEEEEEEECSSSCCEEEEEEEECTTSEEEEESSTT----CCSEEEEEEHHHHEEEEEEGGGCCSCCCSTTCCGGGE
T ss_pred             cceeEEEEEEeeCCCCCCeeceEEEEeeCCEEEEEcCCC----CCCCCccccccccceeecccccccccCCCCCCCcCcE
Confidence            35689999999998889999999999 899999999988    67788988887532       1211  2222234789


Q ss_pred             EEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           95 FELSTG-EYTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        95 f~i~~~-~~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      |.|.++ ++.|+|+|+|++|++.|+.||+.+..
T Consensus        79 F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~  111 (112)
T 3aj4_A           79 LQIVCRDGKTISLCAESTDDCLAWKFTLQDSRT  111 (112)
T ss_dssp             EEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEEEecCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence            999865 89999999999999999999998864

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=99.90  E-value=9.1e-23  Score=126.24  Aligned_cols=95  Identities=23%  Similarity=0.509  Sum_probs=79.4

Q ss_pred             eEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC-CeEEEEE
Q 041556           29 RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG-EYTMYFV  107 (143)
Q Consensus        29 ~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~-~~~~~~~  107 (143)
                      ++|||.|+++..+.|++|||||.++.|+||+++.+.  ...+.+.|+|.++.+. ..+   ..+++|.|.++ ++.|+|+
T Consensus         1 ~eG~L~K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~--~~~~~g~i~L~~~~v~-~~~---~~~~~F~i~~~~~r~~~l~   74 (103)
T 3rcp_A            1 MEGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDV--CKGSKGSIKMAVCEIK-VHS---ADNTRMELIIPGEQHFYMK   74 (103)
T ss_dssp             CEEEEEEECCTTTCEEEEEEEEETTEEEEESSCC-----CCCSCEEEGGGCEEE-CCT---TCSSEEEEEETTTEEEEEE
T ss_pred             CceEEEEccCCCCCeeceEEEEECCEEEEEecCCcc--cCCcccEEEeeeeEEE-EcC---CCCceEEEEeCCCCEEEEE
Confidence            589999999888999999999999999999998721  2358999999987543 332   35889999987 7999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHhhc
Q 041556          108 ADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       108 a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      |+|++|++.|+.+|+.++....
T Consensus        75 a~s~~e~~~Wi~al~~a~~~~~   96 (103)
T 3rcp_A           75 AVNAAERQRWLVALGSSKASLT   96 (103)
T ss_dssp             CSSHHHHHHHHHHHHTTSCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999998876543

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=99.90  E-value=3e-22  Score=127.51  Aligned_cols=100  Identities=27%  Similarity=0.507  Sum_probs=84.0

Q ss_pred             cccceEEEEEeeCC-CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc-ccCCCCceEEEEeCC-
Q 041556           25 SNPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE-DLLNKPFAFELSTGE-  101 (143)
Q Consensus        25 ~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~-~~~~~~~~f~i~~~~-  101 (143)
                      ..++++|||.|+++ ..+.|++|||||.++.|+||+++.    +..+.+.|+|.++.+..... ....++++|.|.+++ 
T Consensus         9 ~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~----~~~~~g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~~~   84 (123)
T 1upq_A            9 LPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSR----EESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGM   84 (123)
T ss_dssp             SCEEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTT----CCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTS
T ss_pred             CCceEEEEEEeeCCCCCCCceeEEEEEeCCEEEEECCCC----CcccceEEECCCCEEEECCCCccCCCcEEEEEECCCC
Confidence            34689999999985 678999999999999999999988    67899999999985544332 223578999998876 


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          102 YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       102 ~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +.|+|+|+|++|+..|+.+|+.++...
T Consensus        85 r~~~l~a~s~~e~~~Wi~al~~a~~~~  111 (123)
T 1upq_A           85 RTYVLAADTLEDLRGWLRALGRASRAE  111 (123)
T ss_dssp             CCEEEECSSHHHHHHHHHHHHHHHC--
T ss_pred             eEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999998754

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.90  E-value=9.1e-23  Score=130.99  Aligned_cols=104  Identities=24%  Similarity=0.425  Sum_probs=84.9

Q ss_pred             cccccccceEEEEEeeCCCCCCeeeEEEEEE--CCeEEEEccC-CCCCCCCCccEEEeCCCeEEeecCcc----c---CC
Q 041556           21 IEFWSNPERSGWLTKQGDYIKTWRRRWFILK--QGKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAED----L---LN   90 (143)
Q Consensus        21 ~~~~~~~~~~G~L~k~~~~~~~w~~r~~vL~--~~~l~~y~~~-~~~~~~~~~~~~i~L~~~~~~~~~~~----~---~~   90 (143)
                      .+...+++++|||.|++...+.|++|||||.  +..|+||+++ .    ...+.+.|+|.+|.+......    .   ..
T Consensus        12 ~~~~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~----~~~~~g~i~L~~~~v~~~~~~~~p~~~~~~~   87 (129)
T 1x1g_A           12 VELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKE----ENRPVGGFSLRGSLVSALEDNGVPTGVKGNV   87 (129)
T ss_dssp             CTTCSEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSSSC----CSSCSCCEESTTCCCEECCSSSSCSSCSSCC
T ss_pred             cccCCCEEEEEEEEEECCCCCCeeeEEEEEeCCCCeEEEeCCCCc----CCccceEEECcCCEEEEeCCCCCcccccCCC
Confidence            4455678999999999988899999999999  4799999987 4    578999999998754433221    0   11


Q ss_pred             CCceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           91 KPFAFELSTGE-YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        91 ~~~~f~i~~~~-~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      ++++|.|.+++ +.|+|+|+|++|++.|+.+|+.++...
T Consensus        88 ~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~  126 (129)
T 1x1g_A           88 QGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTSGP  126 (129)
T ss_dssp             CSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHHSSSS
T ss_pred             CCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence            68999999886 679999999999999999999987543

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=4.7e-22  Score=126.42  Aligned_cols=98  Identities=30%  Similarity=0.628  Sum_probs=82.6

Q ss_pred             cccceEEEEEeeCC-CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeec-CcccCCCCceEEEEeC-C
Q 041556           25 SNPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG-AEDLLNKPFAFELSTG-E  101 (143)
Q Consensus        25 ~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~-~~~~~~~~~~f~i~~~-~  101 (143)
                      ..++++|||+|+++ ..+.|++|||||.++.|+||+++.    +..+.+.|+|.++.+... ..+...++++|.|.++ +
T Consensus        20 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~   95 (122)
T 2yry_A           20 APVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEK----EESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGV   95 (122)
T ss_dssp             CCEEEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTT----CCSCCEEEESTTCCCEECCTTCSCSSSSEEEEECSSS
T ss_pred             CCccEEEEEEEECCCCCCCcEEEEEEEeCCEEEEECCCC----CCCcccEEEcCCCEEEEcCccccCCcccEEEEecCCC
Confidence            45689999999974 678999999999999999999988    678999999999753322 2233467899999755 6


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556          102 YTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       102 ~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      +.|+|+|+|++|++.|+.+|+.++.
T Consensus        96 r~~~l~a~s~~e~~~Wi~al~~a~~  120 (122)
T 2yry_A           96 RTYFFSAESPEEQEAWIQAMGEAAR  120 (122)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             cEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998864

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=7.6e-23  Score=130.05  Aligned_cols=99  Identities=20%  Similarity=0.488  Sum_probs=83.2

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEE--CCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC-
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILK--QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE-  101 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~--~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~-  101 (143)
                      ..+.++|||.|++...+.|++|||||.  ++.|+||+++.+.  ...+.+.|+|.++.+ ....   .++++|.|.+++ 
T Consensus         6 ~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~--~~~~~g~I~L~~~~v-~~~~---~~~~~F~i~~~~~   79 (120)
T 2d9x_A            6 SGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSR--NQKPRGTLQLAGAVI-SPSD---EDSHTFTVNAASG   79 (120)
T ss_dssp             SCCCCEEEEEEEEETTTEEEEEEEEECTTTCEEEEESSGGGS--SSCCSEEEECTTCCE-ECCS---SSSSCEEECCSSS
T ss_pred             CCCcEEEEEEecCCCCCCceEEEEEEECCCCEEEEEecCccc--CCCccceEEcceEEE-EecC---CCCCEEEEEcCCC
Confidence            457899999999988889999999999  5799999988721  236899999999853 3332   467999999886 


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556          102 YTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       102 ~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      +.|+|+|+|++|++.||.+|+.++....
T Consensus        80 r~~~l~a~s~~e~~~Wi~al~~~~~~~~  107 (120)
T 2d9x_A           80 EQYKLRATDAKERQHWVSRLQICTQHHT  107 (120)
T ss_dssp             CCEEECCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999987654

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.89  E-value=8.3e-23  Score=127.43  Aligned_cols=97  Identities=15%  Similarity=0.303  Sum_probs=78.9

Q ss_pred             cccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC-C
Q 041556           23 FWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG-E  101 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~-~  101 (143)
                      ...++.++|||.|+  ..+.|++|||||.++.|+||+++.+   ...+...|.|.+|.+ ....+ ..++++|.|.++ .
T Consensus         4 ~~~~~~~~G~L~K~--~~k~Wk~RwfvL~~~~L~yyk~~~~---~~~~~~~i~l~~~~v-~~~~~-~~~~~~F~i~~~~~   76 (107)
T 2cof_A            4 GSSGLETSSYLNVL--VNSQWKSRWCSVRDNHLHFYQDRNR---SKVAQQPLSLVGCEV-VPDPS-PDHLYSFRILHKGE   76 (107)
T ss_dssp             CCCCCTTCCEEEEE--ETTEEEEEEEEECSSCEEEECSSTT---CSEEEEEECTTTCEE-ECCCB-TTBSCEEEEEETTE
T ss_pred             CCCCCcEeEEEEEe--cCCCcceEEEEEECCEEEEEeCCcc---cCCCeeEEeccceEE-EECCC-CCCCeEEEEEeCCC
Confidence            33567899999999  5679999999999999999999862   234566777888743 33332 367899999988 7


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556          102 YTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       102 ~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      ++|+|+|+|++|++.||.||+.++.
T Consensus        77 r~~~l~A~s~~e~~~Wi~al~~~~~  101 (107)
T 2cof_A           77 ELAKLEAKSSEEMGHWLGLLLSESG  101 (107)
T ss_dssp             EEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            8899999999999999999998755

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=99.89  E-value=4.9e-22  Score=126.30  Aligned_cols=98  Identities=16%  Similarity=0.343  Sum_probs=80.4

Q ss_pred             cceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccC-------CCCceEEEEe
Q 041556           27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLL-------NKPFAFELST   99 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~-------~~~~~f~i~~   99 (143)
                      ++++|||+|++...+.|++|||||+++.|+||+++... .+..|.+.|.|.+|.+.....+..       .+++.|.|..
T Consensus         6 ~~k~G~L~Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~~-~d~~P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F~i~~   84 (120)
T 4a6h_A            6 EIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRK-KDLVPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHA   84 (120)
T ss_dssp             CSEEEEEEEEETTTTEEEEEEEEECSSEEEEESSCCTT-TCCSCSEEEEGGGEEEEEECCCCC---------CCEEEEEE
T ss_pred             ccEEEEEEEcCCCCCCCccEEEEEeCCEEEEEcCCCcC-cCCCceEEEECCCCEEEEcccccccccccccCCCcEEEEEe
Confidence            79999999999988999999999999999999987521 245699999999997665443321       2678899976


Q ss_pred             CC-------eEEEEEcCCHHHHHHHHHHHHHHH
Q 041556          100 GE-------YTMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus       100 ~~-------~~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      .+       +.|+|+|+|.+|+++|+.+|+.++
T Consensus        85 ~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~  117 (120)
T 4a6h_A           85 KQNGIIRRGHNWVFKADSYESMMSWFDNLKILT  117 (120)
T ss_dssp             SSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence            54       589999999999999999999874

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=99.89  E-value=1.5e-23  Score=134.04  Aligned_cols=112  Identities=27%  Similarity=0.520  Sum_probs=82.7

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEEC-CeEEEEccCCCCCCCCCccEEEeCCCeEEeec--CcccCCCCceEEEEe--
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG--AEDLLNKPFAFELST--   99 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~-~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~--~~~~~~~~~~f~i~~--   99 (143)
                      ..++++|||.|++...+.|++|||||.+ +.|+||+++.    ...+.+.|+|..+.++..  ......++++|+|.+  
T Consensus         6 ~~~~~~G~L~K~g~~~k~WkkRwfvL~~~~~L~yy~~~~----~~~~~g~i~L~~~~~~~~~~~~~~~~~~~~F~I~~~~   81 (125)
T 1unq_A            6 VAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERP----QDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQ   81 (125)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEETTSEEEEESSCC----CSHHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEE
T ss_pred             CCeeEEeeEEeccCCccCccCcEEEEecCCEEEEEeCCC----CCCCCceeEccceeEEeeeecccccCCCCEEEEEecC
Confidence            4578999999999888999999999995 6999999987    556777788877543211  111126789999985  


Q ss_pred             --CCeEEEEEcCCHHHHHHHHHHHHHHHHhhcCCCCccceecccC
Q 041556          100 --GEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESEVVDYDN  142 (143)
Q Consensus       100 --~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~~~~~~~~~~~~  142 (143)
                        ..+.|+|+|+|++|+..|+.||+.++......  .++.+++.+
T Consensus        82 ~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~--~~~~~~~~~  124 (125)
T 1unq_A           82 WTTVIERTFHVETPEEREEWTTAIQTVADGLKKQ--EEEEMDFRS  124 (125)
T ss_dssp             TTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH--HHC------
T ss_pred             CCCceeEEEEeCCHHHHHHHHHHHHHHHhhcccc--hhhhhhccc
Confidence              46889999999999999999999998765332  244444443

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=99.89  E-value=1.4e-22  Score=130.86  Aligned_cols=104  Identities=24%  Similarity=0.491  Sum_probs=82.8

Q ss_pred             cccceEEEEEee--CCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEE--eecCc-ccCCCCceEEEEe
Q 041556           25 SNPERSGWLTKQ--GDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLT--VRGAE-DLLNKPFAFELST   99 (143)
Q Consensus        25 ~~~~~~G~L~k~--~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~--~~~~~-~~~~~~~~f~i~~   99 (143)
                      ..+.++|||+|+  ++..+.|++|||||.++.|+||+++.+. ....|.+.|+|.+|.+  +...+ +...++++|.|.+
T Consensus         3 ~~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~-~~~~p~g~I~L~~~~~~~v~~~~~~~~~~~~~F~i~~   81 (134)
T 2y7b_A            3 SSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDE-KRKNPIGRINLANCTSRQIEPANREFCARRNTFELIT   81 (134)
T ss_dssp             CCCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHH-TTSCCSEEEEGGGBCSSSCEECCTTTCCCTTEEEEEE
T ss_pred             CCceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCcc-cccCceEEEEhhhCccccccccchhhccCCCEEEEEe
Confidence            457899999998  7777899999999999999999954310 1368999999999853  33332 2236789999986


Q ss_pred             --CC------------------eEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556          100 --GE------------------YTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       100 --~~------------------~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                        ++                  +.|+|+|+|++|+..||.||+.++....
T Consensus        82 ~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~~~  131 (134)
T 2y7b_A           82 VRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVDIR  131 (134)
T ss_dssp             EEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHh
Confidence              32                  4799999999999999999999987653

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=99.89  E-value=6.9e-22  Score=136.99  Aligned_cols=100  Identities=17%  Similarity=0.373  Sum_probs=85.8

Q ss_pred             ccccceEEEEEeeCC----CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc--ccCCCCceEEE
Q 041556           24 WSNPERSGWLTKQGD----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE--DLLNKPFAFEL   97 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~----~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~~f~i   97 (143)
                      +.+++++|||+|++.    ..+.|++|||||.++.|+||+++.    ...+.+.|+|.++.++....  ....++++|.|
T Consensus       103 l~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~----~~~p~g~I~L~~~~~v~~~~~~~~~~k~~~F~I  178 (211)
T 1u5e_A          103 LPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDK----DKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEI  178 (211)
T ss_dssp             CSSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTT----CSSCSEEEECTTCEEEECGGGCSSTTGGGEEEE
T ss_pred             cCCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCC----CccceEEEEeCCcEEEEcCCccccCCCCCEEEE
Confidence            456889999999975    357999999999999999999988    67899999999987765432  22356799999


Q ss_pred             EeCC-eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556           98 STGE-YTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        98 ~~~~-~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      .+++ +.|+|+|++++++..|+.||+.++..
T Consensus       179 ~t~~~r~~~l~A~s~~e~~~Wi~aL~~ai~~  209 (211)
T 1u5e_A          179 CAPDKRIYQFTAASPKDAEEWVQQLKFILQD  209 (211)
T ss_dssp             ECSSSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             EcCCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            9885 99999999999999999999999874

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=99.87  E-value=7.1e-22  Score=122.63  Aligned_cols=95  Identities=18%  Similarity=0.386  Sum_probs=75.4

Q ss_pred             eEEEEEeeC--------CCCCCeeeEEEEEECCeEEEEccCCCCC--CCCCccEEEeCCCeEEeecCcccCCCCceEEEE
Q 041556           29 RSGWLTKQG--------DYIKTWRRRWFILKQGKLFWFKDSHNIT--PGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELS   98 (143)
Q Consensus        29 ~~G~L~k~~--------~~~~~w~~r~~vL~~~~l~~y~~~~~~~--~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~   98 (143)
                      ++|||.+++        ...+.|++|||||.++.|+||+++.+..  ....+...|+|.++.+ ....+..+++++|+|.
T Consensus         1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~-~~~~~~~~~~~~F~i~   79 (106)
T 1btn_A            1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAIC-EVALDYKKKKHVFKLR   79 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEE-EECSSCCSSSSEEEEE
T ss_pred             CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEE-EEcccccCCccEEEEE
Confidence            589999997        5678999999999999999999876210  0123566899988743 3333445789999999


Q ss_pred             eCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 041556           99 TGE-YTMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus        99 ~~~-~~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                      +++ +.|+|+|+|++|+.+||.||+.|
T Consensus        80 ~~~~~~~~~~A~s~~e~~~Wi~ai~~A  106 (106)
T 1btn_A           80 LSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             CTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             ecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            764 99999999999999999999864

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=99.87  E-value=9.1e-22  Score=131.83  Aligned_cols=98  Identities=21%  Similarity=0.533  Sum_probs=68.4

Q ss_pred             ccceEEEEE----------eeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCC--eEEeecCcccCCCCc
Q 041556           26 NPERSGWLT----------KQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGT--CLTVRGAEDLLNKPF   93 (143)
Q Consensus        26 ~~~~~G~L~----------k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~--~~~~~~~~~~~~~~~   93 (143)
                      ++.++|||.          |++...+.|++|||||.++.|+||+++.+.  ...+.+.|+|..  |. +....+..++++
T Consensus         2 dv~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~--~~~~~g~i~l~~~~~~-~~~~~~~~~~~~   78 (168)
T 2j59_M            2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQ--TTPSEEEQPISVNACL-IDISYSETKRKN   78 (168)
T ss_dssp             -CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC----------CEECSSCE-EEECSSSCSCSS
T ss_pred             CCcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCccc--ccccCCceEecccceE-EEeccccCCCCC
Confidence            568999999          555567899999999999999999998621  245677776655  43 323333347899


Q ss_pred             eEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           94 AFELSTGEYTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        94 ~f~i~~~~~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      +|+|.++++.|+|+|++++|+..||.+|+.++.
T Consensus        79 ~F~I~t~~r~~~l~A~s~~e~~~Wi~ai~~~~~  111 (168)
T 2j59_M           79 VFRLTTSDCECLFQAEDRDDMLAWIKTIQESSN  111 (168)
T ss_dssp             EEEEECSSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             EEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998754

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=99.86  E-value=9.2e-21  Score=140.10  Aligned_cols=100  Identities=38%  Similarity=0.734  Sum_probs=86.0

Q ss_pred             cccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC--
Q 041556           23 FWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG--  100 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~--  100 (143)
                      ...++.++|||.|+++..+.|++|||||.++.|+||+++.    +..+.+.|+|.++.+.....  ..++++|+|.++  
T Consensus       209 ~f~~~~k~G~L~K~g~~~k~WkkRwFVL~~~~L~Yyk~~~----~~~p~G~I~L~~~~v~~~~~--~~~~~~F~I~~~~~  282 (347)
T 2r09_A          209 TFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT----DKEPRGIIPLENLSIREVED--PRKPNCFELYNPSH  282 (347)
T ss_dssp             CCCCCCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTT----CSSCSEEEECTTCEEEEECC--SSCSSEEEEECSSS
T ss_pred             cccccccCCeeEecCCCcccceeEEEEEcCCEEEEEcCCC----ccCCcEEEEcCCeEEEEccC--CCCCCEEEEEeCCc
Confidence            3456899999999998889999999999999999999988    67899999999986543332  368999999865  


Q ss_pred             --------------------CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          101 --------------------EYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       101 --------------------~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                                          .+.|+|+|+|++|+..|+.+|+.++...
T Consensus       283 ~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~~  330 (347)
T 2r09_A          283 KGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD  330 (347)
T ss_dssp             TTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence                                3789999999999999999999987643

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=99.86  E-value=3.7e-21  Score=134.79  Aligned_cols=96  Identities=21%  Similarity=0.591  Sum_probs=85.1

Q ss_pred             cccceEEEEEeeCCCC-----CCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEe
Q 041556           25 SNPERSGWLTKQGDYI-----KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELST   99 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~-----~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~   99 (143)
                      .+++++|||.|++...     +.|++|||||.++.|+||+++.    +..+.+.|+|.++..+....   .++++|+|.+
T Consensus        56 ~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~----~~~~~g~I~L~~~~~v~~~~---~k~~~F~I~t  128 (228)
T 3tfm_A           56 QEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDS----EEKLKGTVEVRSAKEIIDNT---NKENGIDIIM  128 (228)
T ss_dssp             CCSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTT----CCSEEEEEEGGGCSEEEEET---TTTSEEEEEC
T ss_pred             CCcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCC----CcceeEEEEcCCCEEeccCC---CCCcEEEEEc
Confidence            4678999999998754     7999999999999999999998    67899999999986654332   5789999999


Q ss_pred             CCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556          100 GEYTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus       100 ~~~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      +++.|+|+|+|++|++.|+.+|+.++..
T Consensus       129 ~~r~~~l~A~s~~e~~~Wv~aL~~~i~~  156 (228)
T 3tfm_A          129 ADRTFHLIAESPEDASQWFSVLSQVHSS  156 (228)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999873

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=99.85  E-value=1.3e-21  Score=124.80  Aligned_cols=102  Identities=14%  Similarity=0.319  Sum_probs=79.8

Q ss_pred             cccceEEEEEeeCC--------CCCCeeeEEEEEECCeEEEEccCCCCCC--CC--CccEEEeCCCeEEeecCcccCCCC
Q 041556           25 SNPERSGWLTKQGD--------YIKTWRRRWFILKQGKLFWFKDSHNITP--GS--TPRGVIPVGTCLTVRGAEDLLNKP   92 (143)
Q Consensus        25 ~~~~~~G~L~k~~~--------~~~~w~~r~~vL~~~~l~~y~~~~~~~~--~~--~~~~~i~L~~~~~~~~~~~~~~~~   92 (143)
                      .++.++|||.++..        ..+.|++|||||+++.|+||+++.+...  ..  .+.+.|+|.++. +....+..+++
T Consensus         6 ~~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~-v~~~~d~~kr~   84 (122)
T 1dro_A            6 AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAA-IEIASDYTKKK   84 (122)
T ss_dssp             SSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCC-CEECCSSSSST
T ss_pred             CceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECCCCE-EEeCCCCCCCC
Confidence            45679999988642        3579999999999999999999873110  00  123678898873 44455555789


Q ss_pred             ceEEEEe-CCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556           93 FAFELST-GEYTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        93 ~~f~i~~-~~~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      |+|+|.+ +++.|+|+|+|++||++||.||+.++..
T Consensus        85 ~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~  120 (122)
T 1dro_A           85 HVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS  120 (122)
T ss_dssp             TEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred             eEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            9999996 5789999999999999999999998764

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=99.85  E-value=1.8e-20  Score=119.77  Aligned_cols=101  Identities=26%  Similarity=0.435  Sum_probs=78.5

Q ss_pred             cccceEEEEEee-----CC--CCCCeeeEEEEEECCeEEEEccCCCCCCC--------CCccEEEeCCCeEEeecCc-cc
Q 041556           25 SNPERSGWLTKQ-----GD--YIKTWRRRWFILKQGKLFWFKDSHNITPG--------STPRGVIPVGTCLTVRGAE-DL   88 (143)
Q Consensus        25 ~~~~~~G~L~k~-----~~--~~~~w~~r~~vL~~~~l~~y~~~~~~~~~--------~~~~~~i~L~~~~~~~~~~-~~   88 (143)
                      .++.++|+|.++     |.  ..+.|+++||||+++.|+||+++......        ..+.+.|+|.+|. ++... +.
T Consensus         6 ~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~-v~~~~~d~   84 (124)
T 3pp2_A            6 KTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGAT-LSWAPKDK   84 (124)
T ss_dssp             ---CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCE-EEECCGGG
T ss_pred             CcEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCE-EEeccccc
Confidence            457899999986     21  23589999999999999999987742111        1467899999984 44443 55


Q ss_pred             CCCCceEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           89 LNKPFAFELSTG-EYTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        89 ~~~~~~f~i~~~-~~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      .+++|+|+|.++ ++.|+|+|+|+++|.+|+.+|+++|.
T Consensus        85 ~krk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI~  123 (124)
T 3pp2_A           85 SSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQ  123 (124)
T ss_dssp             CSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred             CCCceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence            688999999876 57899999999999999999999875

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=99.85  E-value=1.4e-20  Score=134.34  Aligned_cols=103  Identities=21%  Similarity=0.421  Sum_probs=81.9

Q ss_pred             cccceEEEEE--------eeCCC----CCCeeeEEEEEECCeEEEEccCCCC--CCCCCccEEEeCCCeEEeecCcccCC
Q 041556           25 SNPERSGWLT--------KQGDY----IKTWRRRWFILKQGKLFWFKDSHNI--TPGSTPRGVIPVGTCLTVRGAEDLLN   90 (143)
Q Consensus        25 ~~~~~~G~L~--------k~~~~----~~~w~~r~~vL~~~~l~~y~~~~~~--~~~~~~~~~i~L~~~~~~~~~~~~~~   90 (143)
                      ..++++|||.        |.+..    .+.|++|||||.++.|+||+++...  .....|.+.|+|.++.+.. ..+...
T Consensus         9 ~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~~~~v~~-~~~~~k   87 (263)
T 3a8p_A            9 GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQS-VPEHPK   87 (263)
T ss_dssp             -CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC------CCCSEEEECTTCEEEE-CTTCSS
T ss_pred             CCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCcccccccccCccceEEcCCcEEEE-CCcCCC
Confidence            4578999999        44444    7899999999999999999985311  0146789999999885543 333346


Q ss_pred             CCceEEEEe-CCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           91 KPFAFELST-GEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        91 ~~~~f~i~~-~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      ++++|+|.+ .++.|+|+|+|++|+++||.||+.++...
T Consensus        88 k~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~  126 (263)
T 3a8p_A           88 KEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASL  126 (263)
T ss_dssp             CSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence            799999998 57899999999999999999999998765

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=99.85  E-value=3.3e-20  Score=119.13  Aligned_cols=103  Identities=19%  Similarity=0.362  Sum_probs=70.8

Q ss_pred             ccceEEEEEeeCC--CCCCeeeEEEEEEC-CeEEEEccCCCCC-------------CCCCccEEEeCCCeEEeec----C
Q 041556           26 NPERSGWLTKQGD--YIKTWRRRWFILKQ-GKLFWFKDSHNIT-------------PGSTPRGVIPVGTCLTVRG----A   85 (143)
Q Consensus        26 ~~~~~G~L~k~~~--~~~~w~~r~~vL~~-~~l~~y~~~~~~~-------------~~~~~~~~i~L~~~~~~~~----~   85 (143)
                      .++++|||.|+++  ..+.|++|||||.+ +.|+||++..+..             ....+.+.|+|.++.+...    .
T Consensus         3 ~~~k~G~L~K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~~~   82 (128)
T 2rlo_A            3 IPIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASGSA   82 (128)
T ss_dssp             CEEEEEEEEEECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCCCC
T ss_pred             cceeEEEEEEecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCccccccccccccccccc
Confidence            3689999999943  57899999999996 7888887522100             0011233334443321100    0


Q ss_pred             cccCCCCceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           86 EDLLNKPFAFELSTGE-YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        86 ~~~~~~~~~f~i~~~~-~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +....++++|.|.+++ ++|+|+|+|++|++.||.||+.++...
T Consensus        83 ~~~~~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~~  126 (128)
T 2rlo_A           83 GQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILAS  126 (128)
T ss_dssp             SSCCCCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence            0011468999999887 899999999999999999999998753

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=99.85  E-value=6e-20  Score=116.90  Aligned_cols=103  Identities=18%  Similarity=0.304  Sum_probs=79.9

Q ss_pred             ceEEEEEee-----CCC--CCCeeeEEEEEECCeEEEEccCCCCC-----CCCCccEEEeCCCeEEeecCcccCCCCceE
Q 041556           28 ERSGWLTKQ-----GDY--IKTWRRRWFILKQGKLFWFKDSHNIT-----PGSTPRGVIPVGTCLTVRGAEDLLNKPFAF   95 (143)
Q Consensus        28 ~~~G~L~k~-----~~~--~~~w~~r~~vL~~~~l~~y~~~~~~~-----~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f   95 (143)
                      .++|+|.+.     |..  .+.|+++||+|.++.|+||+...-..     -+..|.+.|+|.|+.+ +. .+...++++|
T Consensus         2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V-~~-~e~~~~~~~F   79 (126)
T 2dtc_A            2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMV-QL-PDDPEHPDIF   79 (126)
T ss_dssp             CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEE-EC-CCCTTSTTEE
T ss_pred             ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEE-Ee-cCCCCCCCEE
Confidence            468888854     442  57899999999999999999763110     1347899999999855 43 3334689999


Q ss_pred             EEEeC--CeEEEEEcCCHHHHHHHHHHHHHHHHhhcCCC
Q 041556           96 ELSTG--EYTMYFVADTEKEKEEWINSIGRAIVQHSRSV  132 (143)
Q Consensus        96 ~i~~~--~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~~  132 (143)
                      +|.++  +..|.|+|+|++++..|+.||+.++.......
T Consensus        80 ~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~~~~~~  118 (126)
T 2dtc_A           80 QLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSSRPQV  118 (126)
T ss_dssp             EEECTTSCSEEEEECSSHHHHHHHHHHHHHHHTSCCC--
T ss_pred             EEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHhcCCCCC
Confidence            99975  67899999999999999999999988655443

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=99.84  E-value=1.2e-20  Score=134.56  Aligned_cols=101  Identities=22%  Similarity=0.490  Sum_probs=80.9

Q ss_pred             ccccceEEEEEeeCCCCCCeeeEEEEEECC-------eEEEEccCCCCCCC-CCccEEEeCCCeEEeecCcccCCCCceE
Q 041556           24 WSNPERSGWLTKQGDYIKTWRRRWFILKQG-------KLFWFKDSHNITPG-STPRGVIPVGTCLTVRGAEDLLNKPFAF   95 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~-------~l~~y~~~~~~~~~-~~~~~~i~L~~~~~~~~~~~~~~~~~~f   95 (143)
                      ..+++++|||.|+    +.|++|||||.++       .|+||+++.+.... ..+.+.|+|..|..+....+ ..++++|
T Consensus         7 ~~~v~k~G~L~K~----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~-~~~~~~F   81 (264)
T 1qqg_A            7 FSDVRKVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRAD-SKNKHLV   81 (264)
T ss_dssp             --CEEEEEEEECT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECC-SSCSSEE
T ss_pred             CCCccEEEEEEEC----CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEeccC-CCCCcEE
Confidence            4578999999998    6999999999988       99999988720001 57999999999876654433 3678999


Q ss_pred             EEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556           96 ELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus        96 ~i~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      .|.+++++|+|+|+|++|++.|+.+|+.++....
T Consensus        82 ~I~t~~rty~l~A~se~e~~~Wi~aL~~~~~~~k  115 (264)
T 1qqg_A           82 ALYTRDEHFAIAADSEAEQDSWYQALLQLHNRAK  115 (264)
T ss_dssp             EEEESSCEEEEECSSHHHHHHHHHHHHHHC----
T ss_pred             EEEECCEEEEEEeCCHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999877654

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.84  E-value=4.3e-20  Score=138.16  Aligned_cols=101  Identities=24%  Similarity=0.522  Sum_probs=84.4

Q ss_pred             ccccceEEEEEeeCCCC-CCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEE----eecCcccC-C--CCceE
Q 041556           24 WSNPERSGWLTKQGDYI-KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLT----VRGAEDLL-N--KPFAF   95 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~-~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~----~~~~~~~~-~--~~~~f   95 (143)
                      ..+++++|||.|+++.. +.|++|||||.++.|+||+++.    +..+.|.|+|..+..    ....+... .  .+++|
T Consensus       266 ~~~~~k~G~L~K~g~~~~k~WKkRwFVL~~~~L~YYk~~~----d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~~F  341 (386)
T 3lju_X          266 SRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPL----DAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGI  341 (386)
T ss_dssp             SCCCSEEEEEEECCTTSCSCCEEEEEEEETTEEEEESSTT----CSBCSEEEECCCGGGTCEEEESCCTTCCSCCSCEEE
T ss_pred             ccccceeeeEEEECCCCCCCCcccEEEEECCEEEEEecCC----CcccceEEEeecceeeeeecccCCccccccCCCcEE
Confidence            35678999999999876 8999999999999999999988    678999999976422    22222211 1  26999


Q ss_pred             EEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           96 ELSTGEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        96 ~i~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +|.+++++|+|+|+|++|+++||.||+.++..+
T Consensus       342 ~I~t~~rty~l~A~s~~e~~~Wi~aL~~~i~~p  374 (386)
T 3lju_X          342 TIVTPDRKFLFACETESDQREWVAAFQKAVDRP  374 (386)
T ss_dssp             EEECSSCEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred             EEEeCCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999864

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=99.82  E-value=1.4e-19  Score=135.52  Aligned_cols=100  Identities=18%  Similarity=0.382  Sum_probs=79.8

Q ss_pred             cccceEEEEEeeCCC--C-CCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC
Q 041556           25 SNPERSGWLTKQGDY--I-KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE  101 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~--~-~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~  101 (143)
                      ..+.++|||+|++..  . +.|++|||||+++.|+||++ .    +..+.+.|+|.+|.+.....  ..++++|.|.+++
T Consensus       276 ~~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~-~----~~~~~~~i~l~~~~v~~~~~--~~r~~~F~i~t~~  348 (385)
T 2q13_A          276 NLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR-G----DVAGGLAMDIDNCSVMAVDC--EDRRYCFQITSFD  348 (385)
T ss_dssp             CCSCCEEEEEEC--------CCEEEEEEEETTEEEEECS-S----CSSCEEEEECTTCEEEEECC--TTCSSEEEEECTT
T ss_pred             CCccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecC-C----CcCCCceEEccceEEEeccc--cCCCceEEEEeCC
Confidence            467899999999764  3 37999999999999999999 3    35678999999986543322  2678999999998


Q ss_pred             --eEEEEEcCCHHHHHHHHHHHHHHHHhhcCC
Q 041556          102 --YTMYFVADTEKEKEEWINSIGRAIVQHSRS  131 (143)
Q Consensus       102 --~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~  131 (143)
                        ++|+|+|+|++|++.||.||+.++......
T Consensus       349 ~~~~~~l~A~s~~e~~~Wi~ai~~~~~~~~~~  380 (385)
T 2q13_A          349 GKKSSILQAESKKDHEEWICTINNISKQIYLS  380 (385)
T ss_dssp             SCBCCCEECSSHHHHHHHHHHHHHHHTTCC--
T ss_pred             CCeEEEEEeCCHHHHHHHHHHHHHHHHhhccc
Confidence              899999999999999999999998765443

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=99.81  E-value=9.5e-20  Score=137.25  Aligned_cols=98  Identities=21%  Similarity=0.412  Sum_probs=79.7

Q ss_pred             cccceEEEEEee---CCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC
Q 041556           25 SNPERSGWLTKQ---GDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE  101 (143)
Q Consensus        25 ~~~~~~G~L~k~---~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~  101 (143)
                      ..+.++|||+++   |...+.|++|||||+++.|+||+...     ..+.+.++|.+|.+. ..+. ..+++||.|.+++
T Consensus       299 ~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~-----~~~~~~~~l~~~~v~-~~~~-~~r~~cF~i~~~~  371 (407)
T 4h8s_A          299 NLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGA-----VAGGLIQDLDNCSVM-AVDC-EDRRYCFQITTPN  371 (407)
T ss_dssp             SCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTC-----SSCCCCBCSSCCEEE-EECC-TTCSSEEEEECTT
T ss_pred             CcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCC-----CCCCeEEECCceEEE-ECCC-CCCCceEEEEecC
Confidence            456799999997   44457899999999999999998765     456778899998554 3322 2678999999875


Q ss_pred             --eEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556          102 --YTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       102 --~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                        ++|+|+|+|++|+..||.||+.++....
T Consensus       372 ~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~~  401 (407)
T 4h8s_A          372 GKSGIILQAESRKENEEWICAINNISRQIY  401 (407)
T ss_dssp             SSCCEEEECSSSHHHHHHHHHHHHHHSCC-
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHHHHHHhh
Confidence              6899999999999999999999987654

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.80  E-value=2.1e-19  Score=134.40  Aligned_cols=98  Identities=20%  Similarity=0.422  Sum_probs=80.0

Q ss_pred             ccccceEEEEEeeCCCCCCeeeEEEEE--ECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEE---
Q 041556           24 WSNPERSGWLTKQGDYIKTWRRRWFIL--KQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELS---   98 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL--~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~---   98 (143)
                      ++..+++|||.|+|+..+.|++|||||  .++.|+||+++.    +..|.+.|.|.++..+.. ++..+++++|+|.   
T Consensus       143 ~~~~~keG~L~KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~----~~~p~g~I~L~~~~~~~~-~~~~~~~~~f~I~~~~  217 (386)
T 3lju_X          143 YSAGYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRND----AKEPKAVMKIEHLNATFQ-PAKIGHPHGLQVTYLK  217 (386)
T ss_dssp             HHSSEEEEEEEEECSSSCCEEEEEEEEETTTTEEEEEC---------CCSEEEEGGGEEEEEC-HHHHTSTTCEEEEEEE
T ss_pred             ccccccccceeeeccccCCceEEEEEEEcCCCEEEEECCCC----ccCcccEEEeeccEEEEc-ccccCCCceEEEEEec
Confidence            345679999999999999999999999  899999999988    789999999999755542 2223689999997   


Q ss_pred             -eCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           99 -TGEYTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        99 -~~~~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                       ++.+.|+|+|+|.+++.+|+.+|+.+..
T Consensus       218 ~~~~R~y~l~A~s~~e~~~Wi~aIr~a~~  246 (386)
T 3lju_X          218 DNSTRNIFIYHEDGKEIVDWFNALRAARF  246 (386)
T ss_dssp             TTEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEcCCHHHHHHHHHhhhhccc
Confidence             5678999999999999999999998743

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=99.80  E-value=1.5e-18  Score=112.61  Aligned_cols=100  Identities=22%  Similarity=0.467  Sum_probs=80.4

Q ss_pred             ceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCC---------CCC---------------------------------
Q 041556           28 ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSH---------NIT---------------------------------   65 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~---------~~~---------------------------------   65 (143)
                      ++.|+|++++...+.|++|||||+++.|+|++...         +..                                 
T Consensus         2 ~k~G~L~~~~~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l~E   81 (150)
T 2fjl_A            2 IKNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHLDE   81 (150)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSSCT
T ss_pred             CcceEEEeecCCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcccc
Confidence            68999999999889999999999999999988111         000                                 


Q ss_pred             ---CCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC---eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556           66 ---PGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE---YTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        66 ---~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~---~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                         .+...+|.|+|.||.+.........++++|.|.+++   +.|+|.|+|+++|.+||.||++|+..
T Consensus        82 ~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~~  149 (150)
T 2fjl_A           82 NSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQT  149 (150)
T ss_dssp             TTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence               001127999999997766555555789999999874   48999999999999999999998753

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=99.78  E-value=9.5e-19  Score=126.16  Aligned_cols=98  Identities=22%  Similarity=0.397  Sum_probs=76.6

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEe---CCCeEEeecCcc----cCCCCceEEE
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIP---VGTCLTVRGAED----LLNKPFAFEL   97 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~---L~~~~~~~~~~~----~~~~~~~f~i   97 (143)
                      ..|.++|||++++...+.|++|||||+++.|+||++..    ...+.+.+.   +..+.+......    ...++|+|.|
T Consensus       166 ~~p~~~G~L~k~~~~~k~WkkR~fvL~~~~L~yyk~~~----~~~~~~~i~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i  241 (291)
T 3tca_A          166 IVPELEGALYLKEDGKKSWKRRYFLLRASGIYYVPKGK----TKTSRDLACFIQFENVNIYYGIQCKMKYKAPTDHCFVL  241 (291)
T ss_dssp             CCCCCEEEEEEECTTSSCEEEEEEEECSSEEEECCTTC----CSSTTTCEEEEEGGGCEEEEECSHHHHHCCSSSCEEEE
T ss_pred             CCCceEEEEEEeCCCCCCceEEEEEEeCCEEEEEecCc----cccccCceeeccceeEEEEecCccccccCCCCCeEEEE
Confidence            35789999999999889999999999999999999887    555555544   444433322221    1356899999


Q ss_pred             EeCC------eEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           98 STGE------YTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        98 ~~~~------~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      .+++      +.|+|+|+|++++..||.||+.|..
T Consensus       242 ~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak~  276 (291)
T 3tca_A          242 KHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAKY  276 (291)
T ss_dssp             ECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence            8753      5699999999999999999998753

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=99.77  E-value=2e-18  Score=109.06  Aligned_cols=98  Identities=18%  Similarity=0.477  Sum_probs=75.7

Q ss_pred             ceEEEEEe--eCCCCC-CeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc-------cCCCCceEEE
Q 041556           28 ERSGWLTK--QGDYIK-TWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED-------LLNKPFAFEL   97 (143)
Q Consensus        28 ~~~G~L~k--~~~~~~-~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~-------~~~~~~~f~i   97 (143)
                      .++|||.+  +++..+ .|++|||||.+..|+||+.+... ....|.+.|+|+.+..|+....       ....++.|+|
T Consensus         2 ~~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~-~~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~I   80 (117)
T 2rov_A            2 RLEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDK-EQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQI   80 (117)
T ss_dssp             CSEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHH-HTTCCSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEEE
T ss_pred             ceEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCc-ccCCceEEEECcccEEEEEcccccccccccccCCcEEEE
Confidence            36899996  666667 89999999999999999986510 0136789999987655443321       1224688999


Q ss_pred             EeC------CeEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           98 STG------EYTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        98 ~~~------~~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      ...      .+.+||.|+|++|++.|+.+|++++.
T Consensus        81 ~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~  115 (117)
T 2rov_A           81 LYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP  115 (117)
T ss_dssp             EECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred             EeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence            753      58999999999999999999998764

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=3.2e-17  Score=102.73  Aligned_cols=105  Identities=24%  Similarity=0.290  Sum_probs=85.3

Q ss_pred             cccccceEEEEEeeC--CCCCCeeeEEEEEEC------CeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc---CCC
Q 041556           23 FWSNPERSGWLTKQG--DYIKTWRRRWFILKQ------GKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL---LNK   91 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~--~~~~~w~~r~~vL~~------~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~---~~~   91 (143)
                      +..+++++|||+++.  .+.+.|+++||||..      ..|-+|++++.......++.+|.|+.|..|.+....   .+.
T Consensus         8 m~e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~~pk~   87 (127)
T 2d9w_A            8 MGDGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPRD   87 (127)
T ss_dssp             SCCCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSSCSS
T ss_pred             ccCccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCccCCCCc
Confidence            446789999999986  455679999999974      389999998854444578899999999777665432   345


Q ss_pred             CceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           92 PFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        92 ~~~f~i~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      .+.|.|.|++++|+|+|++ .|+.+|+.+|...+...
T Consensus        88 ~~aF~l~T~er~~~laAe~-~E~~~Wi~~ic~~aF~~  123 (127)
T 2d9w_A           88 TSAFFLETKERLYLLAAPA-AERGDWVQAICLLAFSG  123 (127)
T ss_dssp             CEEEEEEESSCEEEEEECH-HHHHHHHHHHHHHHTSS
T ss_pred             ceEEEEEeCCcEEEEEeCc-HHHHHHHHHHHHHhcCC
Confidence            6899999999999999996 49999999999887654

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=5.2e-18  Score=108.25  Aligned_cols=99  Identities=18%  Similarity=0.355  Sum_probs=78.8

Q ss_pred             ccceEEEEEeeCC---CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC-
Q 041556           26 NPERSGWLTKQGD---YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE-  101 (143)
Q Consensus        26 ~~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~-  101 (143)
                      .|..++||...+.   .++.|++|||+|++..|+||+++.+.  ...|.+.|+|.+|.+. +.......++.|.+..+. 
T Consensus         8 ~pel~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~--~~ePig~I~L~gceV~-pd~~~~~~kf~ikl~iPs~   84 (137)
T 2ys3_A            8 IPELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEA--PGDPIQQLNLKGCEVV-PDVNVSGQKFCIKLLVPSP   84 (137)
T ss_dssp             CCCEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTT--TSCCSCCBCTTTCEEE-ECCBGGGTBEEEEEEEECS
T ss_pred             CcchhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhc--cCCCceEEECCCCEEe-ccccccCCceEEEEEccCC
Confidence            4678899998754   45789999999999999999998821  1389999999999644 332223567888776543 


Q ss_pred             ---eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556          102 ---YTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus       102 ---~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                         +.|+|.|+|++++.+||.|++.|...
T Consensus        85 ~g~r~y~l~cdsEeqy~~WMaA~rlAskg  113 (137)
T 2ys3_A           85 EGMSEIYLRCQDEQQYARWMAGCRLASKG  113 (137)
T ss_dssp             SSEEEEEEEESSHHHHHHHHHHHHHHHTS
T ss_pred             CCceEEEEECCCHHHHHHHHHHHHHhccC
Confidence               88999999999999999999987644

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=99.71  E-value=4.9e-17  Score=116.20  Aligned_cols=102  Identities=23%  Similarity=0.416  Sum_probs=78.8

Q ss_pred             cccceEEEEEee-----C-------CCCCCeeeEEEEEECCeEEEEccCCCCCC--CCCccEEEeCCCeEEeecCcccCC
Q 041556           25 SNPERSGWLTKQ-----G-------DYIKTWRRRWFILKQGKLFWFKDSHNITP--GSTPRGVIPVGTCLTVRGAEDLLN   90 (143)
Q Consensus        25 ~~~~~~G~L~k~-----~-------~~~~~w~~r~~vL~~~~l~~y~~~~~~~~--~~~~~~~i~L~~~~~~~~~~~~~~   90 (143)
                      ..+.++|||.++     +       ...+.|+++||||.++.|+||+++.....  ...+.+.|.|.++.+. ...+..+
T Consensus         9 ~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~-~a~d~~k   87 (279)
T 3a8n_A            9 GTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQ-AVPEHPK   87 (279)
T ss_dssp             -CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEEC-CCTTSSS
T ss_pred             CceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEE-eccccCC
Confidence            567899999753     1       13579999999999999999998763211  2356778999998544 3445557


Q ss_pred             CCceEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556           91 KPFAFELSTG-EYTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        91 ~~~~f~i~~~-~~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      ++|+|.|.++ ++.|+|+|++++||..|+.+|+.++..
T Consensus        88 Kk~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~~  125 (279)
T 3a8n_A           88 KDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAA  125 (279)
T ss_dssp             SCSCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence            8999999875 678999999999999999999998874

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=99.67  E-value=1.8e-15  Score=98.87  Aligned_cols=101  Identities=16%  Similarity=0.326  Sum_probs=79.1

Q ss_pred             ccceEEEEEeeCC---CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC--
Q 041556           26 NPERSGWLTKQGD---YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG--  100 (143)
Q Consensus        26 ~~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~--  100 (143)
                      .|...+||.....   .++.|+++|||+++..|+||+++++.  ...|.+.|+|.||.+. +.......++.|.+.-+  
T Consensus        46 iPeL~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~--~geP~~~I~LrGCEVt-pDVnva~~Kf~IkL~vP~~  122 (173)
T 4f7h_A           46 IPELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEES--SGTPAHQMNLRGCEVT-PDVNISGQKFNIKLLIPVA  122 (173)
T ss_dssp             TTCEEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGC--SSCCSEEEECTTCEEE-EEEETTTTEEEEEEEEEET
T ss_pred             ChhhHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHh--cCCCceEEecCceEEe-ccccccccceeEEEeccCC
Confidence            4668899987543   46899999999999999999999843  3679999999999654 32222356677776433  


Q ss_pred             --CeEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556          101 --EYTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       101 --~~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                        ...++|.|+++.++.+|+.|++-|....+
T Consensus       123 ~gm~e~~Lrcd~E~qya~WMAAcrLAskGkt  153 (173)
T 4f7h_A          123 EGMNEIWLRCDNEKQYAHWMAACRLASKGKT  153 (173)
T ss_dssp             TEEEEEEEEESSHHHHHHHHHHHHHHHTTCC
T ss_pred             CCcceeeeecCCHHHHHHHHHHhhhhccCCc
Confidence              46799999999999999999998877643

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=99.65  E-value=4.1e-15  Score=105.22  Aligned_cols=99  Identities=13%  Similarity=0.250  Sum_probs=78.5

Q ss_pred             ccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccE---EEeCCCeEEeecCcc----cCCCCceEEEE
Q 041556           26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRG---VIPVGTCLTVRGAED----LLNKPFAFELS   98 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~---~i~L~~~~~~~~~~~----~~~~~~~f~i~   98 (143)
                      .|..+|||++++...+.|++|||+|+++.|+||+..+    .+.+++   .+.|++..+......    ....+++|.|.
T Consensus       131 ~P~~~G~L~~ke~~~K~WkkRyfvLr~sgLy~~~k~~----sk~~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik  206 (256)
T 3hk0_A          131 SPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGT----SAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIK  206 (256)
T ss_dssp             CEEEEEEEEEECTTSSCEEEEEEEEETTEEEEESSTT----CCCGGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEE
T ss_pred             CCcceeEEEEecCCCCcceEEEEEEeCCEEEEEecCC----CCccccceEEEEcCCCEEEEecccccccCCCCCCEEEEE
Confidence            4678999999988889999999999999999999776    445554   478998766554422    13457999998


Q ss_pred             eCC------eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           99 TGE------YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        99 ~~~------~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +..      ..++|+|++++++..|+.||+.+....
T Consensus       207 ~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~g~  242 (256)
T 3hk0_A          207 PNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKYGM  242 (256)
T ss_dssp             ETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHHTH
T ss_pred             cccccCCCceEEEEEeCCHHHHHHHHHHHHHHHhhH
Confidence            653      369999999999999999999886543

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=99.63  E-value=8e-15  Score=94.91  Aligned_cols=101  Identities=18%  Similarity=0.350  Sum_probs=76.7

Q ss_pred             ccceEEEEEeeCC---CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC--
Q 041556           26 NPERSGWLTKQGD---YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG--  100 (143)
Q Consensus        26 ~~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~--  100 (143)
                      .|...+||...+.   .++.||++||++++..|+||+++++.  ...|.+.|+|.||.+. +.......++.|.|.-+  
T Consensus        25 iPeL~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~--~geP~~~inLrGCEVt-PDVnva~~Kf~ikL~ip~~  101 (165)
T 4bbk_A           25 IPKLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELE--QGEPIEKLNLRGCEIV-PDVNVSGRKFGIKLLIPVA  101 (165)
T ss_dssp             -CCEEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGT--TSCCSEEEECTTCEEE-EEEETTTTEEEEEEEEEET
T ss_pred             ChhhHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHh--cCCCceEEecCccEEe-cccccccceeeEEEecCCC
Confidence            4668899987543   46899999999999999999999853  3679999999999654 22122256788887543  


Q ss_pred             --CeEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556          101 --EYTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       101 --~~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                        ...++|.|+++.+..+|+.|++-|....+
T Consensus       102 ~gm~e~~LrcdsE~QYa~WMAAcrLAskGkT  132 (165)
T 4bbk_A          102 DGMNEVYLRCDHEDQYARWMAACILASKGKT  132 (165)
T ss_dssp             TEEEEEEEEESSHHHHHHHHHHHHHHHTTCC
T ss_pred             CcceeeeeecCCHHHHHHHHHHhhhcccccc
Confidence              35789999999999999999998876543

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=99.60  E-value=1.1e-14  Score=104.10  Aligned_cols=103  Identities=18%  Similarity=0.378  Sum_probs=75.1

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc----cCCCCceEEEEeC
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED----LLNKPFAFELSTG  100 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~----~~~~~~~f~i~~~  100 (143)
                      ..|..+|||++++...+.|++|||+|+++.|+||..... ....+..+.+.|+++.+......    ....+++|.|..+
T Consensus       156 ~~pe~~G~L~~k~~~~k~WkkRyfvLr~sgLyy~~K~~s-k~~r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~  234 (281)
T 4gmv_A          156 TVPEIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKA-KVSRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHP  234 (281)
T ss_dssp             CCCCCEEEEEEECTTSSCEEEEEEEECSSCEEEC----------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEECT
T ss_pred             CCCccEEEEEEECCCCCCCeEEEEEEeCCEEEEEeCCCC-CccccceEEEEcCCcEEEEecccccccCCCCCcEEEEecC
Confidence            346789999999888889999999999999998887651 11233456778998755443321    2356899999864


Q ss_pred             ------CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          101 ------EYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       101 ------~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                            ...++|+|++++++..|+.||+.+.-..
T Consensus       235 ~~~~~~~~~~~~caede~~~~~Wv~Air~ak~g~  268 (281)
T 4gmv_A          235 QIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKYGK  268 (281)
T ss_dssp             TCCSCCTTCEEEECSSHHHHHHHHHHHHHHHHTH
T ss_pred             ccCCCCCceEEEEeCCHHHHHHHHHHHHHHhhCc
Confidence                  3579999999999999999999886543

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.57  E-value=6.9e-15  Score=111.52  Aligned_cols=98  Identities=29%  Similarity=0.533  Sum_probs=71.7

Q ss_pred             ccceEEEEEeeCCCCCCeeeEEEEEE-CCeEEEEccCCCCCCCCCccEEEeCCCeEEee--cCcccCCCCceEEEEeCC-
Q 041556           26 NPERSGWLTKQGDYIKTWRRRWFILK-QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR--GAEDLLNKPFAFELSTGE-  101 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~-~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~--~~~~~~~~~~~f~i~~~~-  101 (143)
                      .++++|||.|+|+..+.|++|||+|. ++.|+||+++.    ...+.+.++|..+++..  .......++++|.|...+ 
T Consensus         5 ~v~keG~L~K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~----~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~I~~~~~   80 (446)
T 4ejn_A            5 AIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERP----QDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQW   80 (446)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEEEEEETTSBEEEESSCC-----------CCCGGGBCTTCEEEEECSSSTTEEEEEEEET
T ss_pred             eEEEEeeEEeeccccccccceEEEEeeCCEEEEEecCC----CCCccCcccccCccccceeecCCCCCCCceeEEEcCCC
Confidence            47899999999999999999999997 89999999988    67777888887743221  111112568999997653 


Q ss_pred             eE---EEEEcCCHHHHHHHHHHHHHHHHh
Q 041556          102 YT---MYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus       102 ~~---~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      ..   ..|.+++.+++..|+.||+.++..
T Consensus        81 ~~~~~r~~~~~~~ee~e~W~~ai~~~i~~  109 (446)
T 4ejn_A           81 TTVIERTFHVETPEEREEWTTAIQTVADG  109 (446)
T ss_dssp             TEEEEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred             ceeeeeEEecCCHHHHHHHHHHHHhhhhh
Confidence            22   268999999999999999998543

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=99.55  E-value=5.9e-14  Score=91.03  Aligned_cols=97  Identities=21%  Similarity=0.269  Sum_probs=80.2

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEE
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTM  104 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~  104 (143)
                      ..+++.|+|.|+.+.  .|++|||+|++...+||-++.    ....+|.|+++....++.-.     ...|.|.+++++|
T Consensus        50 e~Ilk~G~v~KrkGl--~~kkR~liLT~~PrL~Yvdp~----~~~~KGeIpls~~l~ve~k~-----~~~F~I~Tp~RtY  118 (151)
T 1w1g_A           50 NLILKMGPVDKRKGL--FARRRQLLLTEGPHLYYVDPV----NKVLKGEIPWSQELRPEAKN-----FKTFFVHTPNRTY  118 (151)
T ss_dssp             CCEEEEEEEEEEETT--EEEEEEEEEETTTEEEEEETT----TTEEEEEECCCTTCEEEESS-----SSEEEEEETTEEE
T ss_pred             CcEEEEEEEEecccC--cceeEEEEEcCCceEEEEcCc----cccccceEecCCCeeEEEcC-----CCEEEEECCCceE
Confidence            357899999997654  499999999999999999988    67899999999865555432     4599999999999


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHHhhcCCCC
Q 041556          105 YFVADTEKEKEEWINSIGRAIVQHSRSVT  133 (143)
Q Consensus       105 ~~~a~s~~e~~~Wi~al~~~~~~~~~~~~  133 (143)
                      +|.+. ..++++|+.||+.++........
T Consensus       119 ~~~d~-~~~AqeWv~aI~~~~~~~~~~~~  146 (151)
T 1w1g_A          119 YLMDP-SGNAHKWCRKIQEVWRQRYQSHP  146 (151)
T ss_dssp             EEECT-TSCHHHHHHHHHHHHHHHHCC--
T ss_pred             EEEcC-ccCHHHHHHHHHHHHHHHhccCc
Confidence            99987 78899999999999987665443

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=4.6e-13  Score=84.06  Aligned_cols=101  Identities=20%  Similarity=0.378  Sum_probs=85.5

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc-----CCCCceEEEEe
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL-----LNKPFAFELST   99 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~-----~~~~~~f~i~~   99 (143)
                      +.++++|||-+.+...+.|+|+|++|..+.+.+|+++.    .......|+|..+..++.....     ...+|||.|.+
T Consensus         6 s~vlkeGWmVH~t~~d~~rKRHYWrLD~K~Itlf~~e~----~~k~ykeIpLseIL~v~~~~~~~~~~~~~~phcFEi~T   81 (129)
T 2d9z_A            6 SGMVKEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNES----GSKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEIIT   81 (129)
T ss_dssp             TTSEEEEEEEEEESSCCCCEEEEEEEESSCEEEESCSS----CCSCCCEECTTTCCEECCTTCCCCSSSCSCCCSEEEEC
T ss_pred             CceeecceEEEEccCCccccceeeEecCCeEEEEecCC----CCceeceeeHHHhcccccccCccccCCCCCCceEEEEE
Confidence            56799999999988778999999999999999999988    7888889999998777665432     12469999999


Q ss_pred             CCeEEEEEcCC---------------HHHHHHHHHHHHHHHHhhc
Q 041556          100 GEYTMYFVADT---------------EKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       100 ~~~~~~~~a~s---------------~~e~~~Wi~al~~~~~~~~  129 (143)
                      .+.+||..++.               .+.++.|..||++|+.-..
T Consensus        82 ~~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALmP~~  126 (129)
T 2d9z_A           82 DTMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALMSGP  126 (129)
T ss_dssp             SSCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhccCCC
Confidence            99999987643               6899999999999987553

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.54  E-value=1.2e-13  Score=86.51  Aligned_cols=100  Identities=21%  Similarity=0.358  Sum_probs=84.1

Q ss_pred             ccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc-----CCCCceEEEE
Q 041556           24 WSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL-----LNKPFAFELS   98 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~-----~~~~~~f~i~   98 (143)
                      .+.++++|||-+.+...+.|+|+|++|....+.+|+++.    ...+...|+|..+..++.....     ...+|||.|.
T Consensus         5 ~s~vlkeGW~VH~t~~d~~rKRHYWrLD~K~Itlf~~e~----~~~~ykeIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~   80 (125)
T 2coa_A            5 SSGTLREGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNT----TNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIV   80 (125)
T ss_dssp             CCSCSEEEEEEECCSSSCCCEEEEEEECSSEEEEESSSS----CSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEE
T ss_pred             CCceeecceEEEEccCCccccceeeEecCCeEEEEecCC----CCceeeeeehhHeecccccccccccCCCCCCceEEEE
Confidence            366899999999998888999999999999999999988    7889999999987777665322     1367999999


Q ss_pred             eCCeEEEEEcC-----------CHHHHHHHHHHHHHHHHh
Q 041556           99 TGEYTMYFVAD-----------TEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        99 ~~~~~~~~~a~-----------s~~e~~~Wi~al~~~~~~  127 (143)
                      +.+.+||..++           -.+.++.|..||++|+.-
T Consensus        81 T~~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqALmP  120 (125)
T 2coa_A           81 TANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALMS  120 (125)
T ss_dssp             CSSCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGGG
T ss_pred             eCCeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhccC
Confidence            99999998863           125699999999999764

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.09  E-value=2.6e-09  Score=68.27  Aligned_cols=105  Identities=15%  Similarity=0.240  Sum_probs=77.4

Q ss_pred             cccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC-
Q 041556           23 FWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE-  101 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~-  101 (143)
                      .+.+++..+-+..+......-+.|||+|.++.|.|...... .......+.++|.+..+. ..++....+|+|.|..+. 
T Consensus        24 ~lG~ii~~s~v~~~~~~~~~~~eR~l~LF~~~Ll~~s~~~~-~~~f~~kgklPL~g~~V~-~~ed~~~~~~aFeI~g~~~  101 (132)
T 1v61_A           24 TLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPR-MSGFMYQGKIPIAGMVVN-RLDEIEGSDCMFEITGSTV  101 (132)
T ss_dssp             TTCCCSCEEEEEBCCSSSSCCCEEEEEECSSCEEEEECSSS-SSCCEEEEEECTTTCBCS-TTCSSSSSCCCEEEECSSS
T ss_pred             hcCCeEEEeeEEEEEcccCcceEEEEEEcCCeEEEEEecCC-CceEEEEEEEecceeEEE-eccccccCccEEEEecCCC
Confidence            34566666666665433345689999999998877665431 113456789999997544 344434679999999875 


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556          102 YTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       102 ~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      ..+.+.|.|.+|++.|+.+|+.+++.+.
T Consensus       102 ~~i~v~~~s~eE~~~Wl~~L~~~i~~~~  129 (132)
T 1v61_A          102 ERIVVHCNNNQDFQEWMEQLNRLTKSGP  129 (132)
T ss_dssp             CEEEECCCCSHHHHHHHHHHHHHHTTSC
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHHHhhcc
Confidence            8899999999999999999999988664

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.95  E-value=5.9e-08  Score=61.11  Aligned_cols=100  Identities=19%  Similarity=0.307  Sum_probs=76.6

Q ss_pred             cccceEEEEEeeCC--------CCCCeeeEEEEEEC------CeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc--cc
Q 041556           25 SNPERSGWLTKQGD--------YIKTWRRRWFILKQ------GKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE--DL   88 (143)
Q Consensus        25 ~~~~~~G~L~k~~~--------~~~~w~~r~~vL~~------~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~--~~   88 (143)
                      ....++|.|.....        ....|++++++|..      -.|-+|.+++    ...|+..|.+..+..+....  +.
T Consensus        16 ~e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPk----ssKpK~~i~cs~I~EVR~tt~LEm   91 (136)
T 1v5m_A           16 VDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPK----ASRPKVSIPLSAIIEVRTTMPLEM   91 (136)
T ss_dssp             CSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTT----SSSCSSCEETTTCCBCCCCCCSSS
T ss_pred             ceeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCc----ccCCccccchhhhhhhhhcccccc
Confidence            45689999976421        33589999999962      3678898888    67888888888764443332  22


Q ss_pred             CCCCceEEEEeCCe-EEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           89 LNKPFAFELSTGEY-TMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        89 ~~~~~~f~i~~~~~-~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      ..+.|.|.|...++ .|+|.|.++.+++.|+..|+.+....
T Consensus        92 PD~~nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~~~g  132 (136)
T 1v5m_A           92 PEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDSG  132 (136)
T ss_dssp             CCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHHHS
T ss_pred             CCccceEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhcCCC
Confidence            45789999988765 79999999999999999999887753

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}

Probab=98.95  E-value=7.6e-09  Score=70.86  Aligned_cols=99  Identities=14%  Similarity=0.260  Sum_probs=79.8

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEEC------C-eEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEE
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQ------G-KLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFEL   97 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~------~-~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i   97 (143)
                      ...+.||++..+.+.  .|+.|||||+.      - .|..|++..++.+....+..+.|..+..++..-...+..|.+.|
T Consensus         7 ~~~v~eg~vk~r~~K--kWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g~~ldk~s~TlAI   84 (224)
T 3ml4_A            7 EAALVEGQVKLRDGK--KWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEGLAHTLAI   84 (224)
T ss_dssp             CCCSEEEEEEEC-----CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEEEEETTEEEEEEE
T ss_pred             cceeEEEeeeeecCC--ceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCccccccccCcccEEEE
Confidence            446789999887654  89999999973      1 67899887754445677889999998788776555577899999


Q ss_pred             EeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 041556           98 STGEYTMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus        98 ~~~~~~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      +..+.++.|.+++.+++..|...|+...
T Consensus        85 Ic~d~~~vLAFds~e~l~~W~~~l~~sl  112 (224)
T 3ml4_A           85 ICLSQAVMLGFDSHEAMCAWDTRIRYAL  112 (224)
T ss_dssp             EESSCEEEEECSSHHHHHHHHHHHHHHT
T ss_pred             EecCcEEEEEeCCHHHHHHHHHHHhhcc
Confidence            9999999999999999999999998654

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=98.94  E-value=6.5e-08  Score=60.30  Aligned_cols=100  Identities=16%  Similarity=0.045  Sum_probs=72.5

Q ss_pred             cceEEEEEeeCC-CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEE
Q 041556           27 PERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMY  105 (143)
Q Consensus        27 ~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~  105 (143)
                      .+++|.|.+... ..+.-++++|+|-+..|.|-.........-.....++|.+..++... +...-++.|.|....+.+.
T Consensus         8 lv~eG~l~el~~~~~k~~~~v~~FLfND~Ll~a~~~~~~~~~~~~~~~~~L~~~~v~d~~-d~~~~~n~f~i~~~~~s~~   86 (113)
T 1zc3_B            8 LVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVK-DNPPMKDMFKLLMFPESRI   86 (113)
T ss_dssp             EEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEEC-CBTTBSSEEEEEETTEEEE
T ss_pred             EEEeCcEEEEccccCCCCccEEEEecCCEEEEEEEeccCcccEEEEEEEEcccCEEEECC-CCcccceEEEEEeCCceEE
Confidence            467899988754 33445678899998888777664311001122346788886555433 3335699999999999999


Q ss_pred             EEcCCHHHHHHHHHHHHHHHHh
Q 041556          106 FVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus       106 ~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      ++|++.+|..+|+.+|+.++..
T Consensus        87 ~~aes~~eK~~Wl~~~~~a~~~  108 (113)
T 1zc3_B           87 FQAENAKIKREWLEVLEETKRA  108 (113)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999754

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=98.64  E-value=1.8e-06  Score=55.32  Aligned_cols=100  Identities=12%  Similarity=0.031  Sum_probs=70.9

Q ss_pred             cceEEEEEeeCC----CCCCeeeEEEEEECCeEEEEccCCC--CCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC
Q 041556           27 PERSGWLTKQGD----YIKTWRRRWFILKQGKLFWFKDSHN--ITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG  100 (143)
Q Consensus        27 ~~~~G~L~k~~~----~~~~w~~r~~vL~~~~l~~y~~~~~--~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~  100 (143)
                      .++.+-|+....    ..++-+.|+|+|.++.|.|-+....  ....-.....++|.|..+.....+  .-+|+|.|...
T Consensus        13 lvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~e--~~p~~~~l~s~   90 (140)
T 3qwm_A           13 LVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFENQ--YYPNGIRLTSS   90 (140)
T ss_dssp             EEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECCS--SCTTEEEEEEC
T ss_pred             EEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccCC--CCceEEEEEec
Confidence            355666655322    2235689999999999988862221  112344667899999755444333  47999999875


Q ss_pred             C------eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          101 E------YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       101 ~------~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      .      ..+.|+|.|+.|+..|+.+|+.+|+.-
T Consensus        91 ~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~e~  124 (140)
T 3qwm_A           91 VPGADIKVLINFNAPNPQDRKKFTDDLRESIAEV  124 (140)
T ss_dssp             CTTSCCEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcceEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence            2      668999999999999999999998754

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=98.58  E-value=1.5e-07  Score=65.57  Aligned_cols=47  Identities=26%  Similarity=0.746  Sum_probs=38.4

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEe
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIP   75 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~   75 (143)
                      ..|.++|||.++|+..+.|++|||||+++.+.||+...    .....|.+.
T Consensus        19 ~~~~~~g~l~~~~~~~~~w~~rw~vl~~~~~~~~~~~~----~~~k~G~L~   65 (228)
T 3tfm_A           19 GSPYFHSFLYMNGGLMNSWKRRWCVLKDETFLWFRSKQ----EALKQGWLH   65 (228)
T ss_dssp             --CCEEEEEEECCTTTCCCEEEEEEEETTEEEEESSCC----CSSEEEEEE
T ss_pred             CCCceEEEEeecCcccccceEEEEEEeCCEEEEeccCC----CcceEEEEE
Confidence            45789999999999999999999999999999999877    444444443

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=98.52  E-value=6.9e-07  Score=67.50  Aligned_cols=97  Identities=20%  Similarity=0.325  Sum_probs=69.1

Q ss_pred             ccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEE
Q 041556           26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMY  105 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~  105 (143)
                      ..+++|.|.+..+.  .++.||++|.++.|.+-+....  ..-.....|+|.++.+.+...+  ..++.|.|.++.+.|.
T Consensus       243 ~li~~g~l~~~~~~--~~~~r~~fLF~d~Ll~~k~~~~--~~y~~k~~i~L~~l~v~~~~~~--~~~~~f~i~~~~~~~~  316 (434)
T 3mpx_A          243 EFLKEGTLMKVTGK--NRRPRHLFLMNDVLLYTYPQKD--GKYRLKNTLAVANMKVSRPVME--KVPYALKIETSESCLM  316 (434)
T ss_dssp             CEEECCEEEEEETT--EEEEEEEEEESSEEEEEEECTT--SCEEEEEEEEC-----CCCCCT--TSCSEEEEECSSCEEE
T ss_pred             ceEecceEEEEeCC--CceEEEEEEECCEEEEEEecCC--CeEEEEEEEEcCCcEEEecCCC--CCCeeEEEecCCeEEE
Confidence            34789999876543  5789999999999999886541  1223457888988644333222  5689999999999999


Q ss_pred             EEcCCHHHHHHHHHHHHHHHHhh
Q 041556          106 FVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       106 ~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      |+|.|.++++.|+.+|+.++...
T Consensus       317 l~a~s~~ek~~W~~~i~~ai~e~  339 (434)
T 3mpx_A          317 LSASSCAERDEWYGCLSRALPED  339 (434)
T ss_dssp             EECSSHHHHHHHHHHHHHC----
T ss_pred             EecCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998764

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=98.46  E-value=6.9e-06  Score=62.63  Aligned_cols=107  Identities=19%  Similarity=0.185  Sum_probs=77.4

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc-----CCCCceEEEEe
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL-----LNKPFAFELST   99 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~-----~~~~~~f~i~~   99 (143)
                      ...+++|.|.+.....+..+.|+++|.++.|.+-+...........++.|+|.++.+.+..+..     ...++.|.|..
T Consensus       332 r~li~~G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~  411 (466)
T 2pz1_A          332 SELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHR  411 (466)
T ss_dssp             SCEEEEEEEEEECTTTCCEEEEEEEEETTEEEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSCCSSCCCBCEEEEEEC
T ss_pred             ceeEEeeeEEEEecCCCCeeEEEEEEECCEEEEEEeccccCCceEEeeeeeccceEEEeCCCCcccccccccceeEEEEe
Confidence            4568899998876533467899999999999888765311111234578899987554433321     12368999986


Q ss_pred             C--CeEEEEEcCCHHHHHHHHHHHHHHHHhhcCC
Q 041556          100 G--EYTMYFVADTEKEKEEWINSIGRAIVQHSRS  131 (143)
Q Consensus       100 ~--~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~  131 (143)
                      .  ...+.|+|.|.+++..|+.+|+.++......
T Consensus       412 ~~~~~~~~l~a~s~~eK~~W~~~i~~a~~~~~~~  445 (466)
T 2pz1_A          412 GATGDSHLLCTRKPEQKQRWLKAFAREREQVQLD  445 (466)
T ss_dssp             SSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHhh
Confidence            5  5689999999999999999999998875443

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=98.38  E-value=1.1e-05  Score=60.58  Aligned_cols=105  Identities=16%  Similarity=0.090  Sum_probs=75.1

Q ss_pred             ccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc-----CCCCceEEEE
Q 041556           24 WSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL-----LNKPFAFELS   98 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~-----~~~~~~f~i~   98 (143)
                      ....+++|.|.+.....+..+.|+++|.++.|.+-+...........++.|+|.++.+.+..+..     ...++.|.|.
T Consensus       254 ~r~Li~~G~l~~~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~  333 (402)
T 2dfk_A          254 SSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLH  333 (402)
T ss_dssp             CCCEEEEEEEEEESSTTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEE
T ss_pred             ccceEEeceEEEEeccCCceEEEEEEeeCCEEEEEEeccccCCceEEeeeeeccceEEEecCCCCccccccccceeEEEE
Confidence            34568899998876533467899999999999888765311111234568889887554433221     1136899998


Q ss_pred             eC--CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           99 TG--EYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        99 ~~--~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      ..  ...+.|+|.|.++...|+.+|+.++...
T Consensus       334 ~~~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~  365 (402)
T 2dfk_A          334 NKETEEVHLFFAKKLEEKIRWLRAFREERKMV  365 (402)
T ss_dssp             ESSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence            75  5689999999999999999999987654

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=98.34  E-value=8.4e-06  Score=60.00  Aligned_cols=98  Identities=17%  Similarity=0.221  Sum_probs=72.5

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCC-------CCCCccEEEeCCCeEEeecCcccCCCCceEEE
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNIT-------PGSTPRGVIPVGTCLTVRGAEDLLNKPFAFEL   97 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~-------~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i   97 (143)
                      ...+++|.|.+.+    .++.|+++|.++.|.+-+......       ..-..++.|+|..+.+.+..+ ....++.|.|
T Consensus       245 r~li~eG~l~~~g----~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~d-~~~~~~~F~i  319 (354)
T 1dbh_A          245 NEFIMEGTLTRVG----AKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDD-TNEYKHAFEI  319 (354)
T ss_dssp             CCEEEEEEEEETT----CSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCC-SSSCCSEEEE
T ss_pred             ceEEEEeeEEEEe----cCceEEEEEeCCEEEEEecCCCCCCCCCCCCcceeEEEEEeccceEEEeCCc-ccccCccEEE
Confidence            4457899998874    568899999999998887653100       011134688999875544332 2245899999


Q ss_pred             EeCC-eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556           98 STGE-YTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        98 ~~~~-~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      ...+ ..|.|+|.|.+++..|+.+|+.+...
T Consensus       320 ~~~~~~~~~l~a~s~~ek~~W~~~i~~~~~~  350 (354)
T 1dbh_A          320 ILKDENSVIFSAKSAEEKNNWMAALISLQYR  350 (354)
T ss_dssp             CCTTSCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             ecCCCCEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            8774 78999999999999999999988764

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=98.33  E-value=1.4e-05  Score=59.93  Aligned_cols=103  Identities=15%  Similarity=0.142  Sum_probs=74.8

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc---CCCCceEEEEe--
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL---LNKPFAFELST--   99 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~---~~~~~~f~i~~--   99 (143)
                      ...+++|.|.......+..+.++++|.++.|.+-+....   .-..+..|+|..+.+.+.....   ...++.|.|..  
T Consensus       232 grli~~G~l~~~~~~~~~~~~~~~fLF~d~Ll~~k~k~~---~y~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~~  308 (406)
T 2vrw_B          232 GRPKIDGELKITSVERRSKTDRYAFLLDKALLICKRRGD---SYDLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQ  308 (406)
T ss_dssp             CSEEEEEEEEEECSSCCSCEEEEEEEESSEEEEEEEETT---EEEEEEEEETTTEEEEC--------CTTCEEEEEEETT
T ss_pred             CcccccccEEEEecCCCccceEEEEecCCEEEEEEecCC---ceEEEEEecccceeeeecCCCCccCCccceeeEEEecC
Confidence            446789999887544456799999999999988876541   2234568889987544333211   13468999986  


Q ss_pred             CCeEEEEEcCCHHHHHHHHHHHHHHHHhhcC
Q 041556          100 GEYTMYFVADTEKEKEEWINSIGRAIVQHSR  130 (143)
Q Consensus       100 ~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~  130 (143)
                      +...|.|+|.|.++++.|+.+|+.++.....
T Consensus       309 ~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~  339 (406)
T 2vrw_B          309 GAQGYELFFKTRELKKKWMEQFEMAISNIYP  339 (406)
T ss_dssp             CSCEEEEEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCceEEEeCCCHHHHHHHHHHHHHHHhhhhh
Confidence            3578999999999999999999999987653

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}

Probab=98.31  E-value=1e-05  Score=54.57  Aligned_cols=101  Identities=16%  Similarity=0.170  Sum_probs=67.5

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCC--CC-CccEEEeCCCeEEeecCcccCCCCceEEEEeC-
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITP--GS-TPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG-  100 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~--~~-~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~-  100 (143)
                      ...+++|.|..+... +.++.+|++|.+..|.+-....+...  .. ....++.|.++.+.+.+.   ..+..|.|... 
T Consensus        69 R~Ll~eG~L~~k~~~-~~~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~~~~pvi~L~~~~vre~a~---d~~~~fli~~~~  144 (185)
T 2lg1_A           69 KKLVRDGSVFLKNAA-GRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAH---EEKGLFLISMGM  144 (185)
T ss_dssp             SCEEEEEEEEEECTT-CCEEEEEEEEESSEEECCEEETTEEECCCCSSSCSEEESSSCEEECCSS---CSSEEEEECCSS
T ss_pred             CceeeeceEEEeccC-CCeeeEEEEeecCEEEEEEecCCEEEEEcccCCCCeEeecceEEeccCC---CCCeEEEEEecC
Confidence            356789999855432 27899999999988877654331000  00 023568888875544333   23444444432 


Q ss_pred             --CeEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556          101 --EYTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       101 --~~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                        .+.|.|.|.|..+++.|+.+|+.|+....
T Consensus       145 ~g~~~yel~a~s~~er~~W~~~I~~Ai~~~~  175 (185)
T 2lg1_A          145 TDPEMVEVHASSKEERNSWIQIIQDTINTLN  175 (185)
T ss_dssp             SCCCCEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCHHHHHHHHHHHHHHHHhCC
Confidence              46899999999999999999999988764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.30  E-value=1e-05  Score=65.22  Aligned_cols=97  Identities=24%  Similarity=0.394  Sum_probs=70.8

Q ss_pred             cceEEEEEeeCC-C-CCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC---
Q 041556           27 PERSGWLTKQGD-Y-IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE---  101 (143)
Q Consensus        27 ~~~~G~L~k~~~-~-~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~---  101 (143)
                      ++..|||..... . ..+-+..||||+...|.||++.+    .+..+.+++|++............+++.|.|..++   
T Consensus       540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  615 (772)
T 3zvr_A          540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDE----EKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRN  615 (772)
T ss_dssp             EEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTT----CCCEEEEEECTTEEEEEC-------CEEEEEEETTSSC
T ss_pred             ceeeeeeeecccccccCCCccceeeccccccccccchh----hhcccccccccccccchhhhccccccccccccCCcccc
Confidence            788999998543 2 24678999999999999999988    56678899998864443334445678999998763   


Q ss_pred             -----eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556          102 -----YTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus       102 -----~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                           +.+-|+|+++++...|..++-+|...
T Consensus       616 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  646 (772)
T 3zvr_A          616 VYKDYRQLELACETQEEVDSWKASFLRAGVY  646 (772)
T ss_dssp             SBTTBSEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred             ccchhhhhhhhccccccchhhHHhhhhcccC
Confidence                 35679999999999999999665443

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=98.26  E-value=2e-05  Score=61.89  Aligned_cols=104  Identities=13%  Similarity=0.123  Sum_probs=77.0

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc---cCCCCceEEEEeCC
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED---LLNKPFAFELSTGE  101 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~---~~~~~~~f~i~~~~  101 (143)
                      ...+++|.|.......+..+.|+++|.++.|.+-+....   .-..+..|+|..+.+.+....   ....++.|.|....
T Consensus       404 grll~~G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~---~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~~  480 (587)
T 3ky9_A          404 GRPKIDGELKITSVERRSKMDRYAFLLDKALLICKRRGD---SYDLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQ  480 (587)
T ss_dssp             CCEEEEEEEEEECSSCCSCEEEEEEEETTEEEEEEEETT---EEEEEEEEEGGGEEEEEC-----CCCTTCEEEEEEETT
T ss_pred             CceEEEeeEEEEeccCCCcceEEEEEECCEEEEEEecCC---EEEeeeeechhhceeeecCCCCcccccccceeEEEEcC
Confidence            446789999887655567899999999999988876541   234567899998755544322   12356899998764


Q ss_pred             --eEEEEEcCCHHHHHHHHHHHHHHHHhhcCC
Q 041556          102 --YTMYFVADTEKEKEEWINSIGRAIVQHSRS  131 (143)
Q Consensus       102 --~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~  131 (143)
                        ..|.|+|.|.+++..|+.+|+.++......
T Consensus       481 ~~~~~~L~A~S~eeK~~Wi~~I~~ai~~~~~~  512 (587)
T 3ky9_A          481 GAQGYELFFKTRELKKKWMEQFEMAISNIYPE  512 (587)
T ss_dssp             C---CEEEESSHHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCceEEEEeCCHHHHHHHHHHHHHHhhhhccc
Confidence              789999999999999999999999876543

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=98.19  E-value=5.5e-05  Score=55.73  Aligned_cols=103  Identities=14%  Similarity=0.139  Sum_probs=71.1

Q ss_pred             ccccceEEEEEeeCC---C--------CCCeeeEEEEEECCeEEEEccCCCCCC------CCCccEEEeCCCeEEeecCc
Q 041556           24 WSNPERSGWLTKQGD---Y--------IKTWRRRWFILKQGKLFWFKDSHNITP------GSTPRGVIPVGTCLTVRGAE   86 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~---~--------~~~w~~r~~vL~~~~l~~y~~~~~~~~------~~~~~~~i~L~~~~~~~~~~   86 (143)
                      ....+++|.+.....   +        ....+.|+++|.++.|.+-+.......      .-..+..|+|..+.+.+...
T Consensus       207 ~g~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~~~  286 (353)
T 1kz7_A          207 LGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVK  286 (353)
T ss_dssp             GCCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBT
T ss_pred             hhhhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccceeeEcCC
Confidence            345678999876421   1        114689999999999988876541100      01124567787764443322


Q ss_pred             ccCCCCceEEEEeC--CeEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556           87 DLLNKPFAFELSTG--EYTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus        87 ~~~~~~~~f~i~~~--~~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                         +.++.|.|...  ...|.|+|.|.++++.|+.+|+.++....
T Consensus       287 ---~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~  328 (353)
T 1kz7_A          287 ---GDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQL  328 (353)
T ss_dssp             ---TBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence               35789999764  57899999999999999999999877653

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=98.16  E-value=3e-05  Score=49.30  Aligned_cols=98  Identities=16%  Similarity=0.289  Sum_probs=62.6

Q ss_pred             eEE-EEEeeCCCCCCeeeEEEEEEC-CeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc---------cCCCCceEEE
Q 041556           29 RSG-WLTKQGDYIKTWRRRWFILKQ-GKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED---------LLNKPFAFEL   97 (143)
Q Consensus        29 ~~G-~L~k~~~~~~~w~~r~~vL~~-~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~---------~~~~~~~f~i   97 (143)
                      ..| .|.|.+.. +.-+.|+|+|.. ..++||.+..  .......+.|+|+.+..|.....         ......+|+|
T Consensus        14 ~~Gt~l~K~~~~-~~~k~r~f~l~~~~~~~w~~s~~--~~~~~~~~~i~i~~I~eIr~G~~s~~~~~~~~~~~~~~~FsI   90 (131)
T 1mai_A           14 LKGSQLLKVKSS-SWRRERFYKLQEDCKTIWQESRK--VMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSI   90 (131)
T ss_dssp             HHCEEEEEESSS-SCEEEEEEEECTTSSEEEECCCC--TTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEE
T ss_pred             HcCCeEEEECCC-CcceeEEEEECCCCCEEEeCCcC--CCCCCcCcEEEHhhhHHHHCCCCCHHHHhhhhcCCccceEEE
Confidence            344 44454432 123678888875 4555664321  01233677899988755554431         1235689999


Q ss_pred             EeCC--eEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556           98 STGE--YTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus        98 ~~~~--~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      +..+  ++++|.|+|.++++.|+.+|+..+....
T Consensus        91 iy~~~~k~LdlvA~s~~e~~~Wv~gL~~L~~~~~  124 (131)
T 1mai_A           91 VFKDQRNTLDLIAPSPADAQHWVQGLRKIIHHSG  124 (131)
T ss_dssp             EESSSCCCEEEECSSHHHHHHHHHHHHHHHC---
T ss_pred             EECCCCceEEEEeCCHHHHHHHHHHHHHHHHhhh
Confidence            8876  5899999999999999999988776543

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=98.14  E-value=4.5e-05  Score=57.32  Aligned_cols=102  Identities=17%  Similarity=0.114  Sum_probs=70.0

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCC--------------CCCCccEEEeCCCeEEeecCcccCC
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNIT--------------PGSTPRGVIPVGTCLTVRGAEDLLN   90 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~--------------~~~~~~~~i~L~~~~~~~~~~~~~~   90 (143)
                      ...+++|.|.+... .+.++.++++|.++.|.+-+......              ........|.|.++.+.+..    .
T Consensus       293 r~li~eG~l~~~~~-~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~~----~  367 (418)
T 3t06_A          293 RKMIHEGPLTWRIS-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVA----T  367 (418)
T ss_dssp             SCEEEEEEEEECCB-TTBCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECS----S
T ss_pred             ceeEEeceEEEEeC-CCCeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceecccc----c
Confidence            44678999987653 23578999999999998887543110              00112357888886443322    3


Q ss_pred             CCceEEEEeC-----CeEEEEEcCCHHHHHHHHHHHHHHHHhhcCC
Q 041556           91 KPFAFELSTG-----EYTMYFVADTEKEKEEWINSIGRAIVQHSRS  131 (143)
Q Consensus        91 ~~~~f~i~~~-----~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~  131 (143)
                      ....|.|...     ...|.|+|.|.++++.|+.+|+.+++.+...
T Consensus       368 ~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~~~~  413 (418)
T 3t06_A          368 DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNAHHH  413 (418)
T ss_dssp             CSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC---
T ss_pred             cCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcCccc
Confidence            4567777653     3789999999999999999999999877544

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=98.13  E-value=9.1e-05  Score=54.67  Aligned_cols=98  Identities=17%  Similarity=0.125  Sum_probs=68.2

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCC--------------CCCCCccEEEeCCCeEEeecCcccCC
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNI--------------TPGSTPRGVIPVGTCLTVRGAEDLLN   90 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~--------------~~~~~~~~~i~L~~~~~~~~~~~~~~   90 (143)
                      ...+++|.|..... .+.++.++++|.++.|.+-+...+.              .......+.|+|.++.+.+..    .
T Consensus       251 R~li~~G~l~~~~~-~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~----~  325 (368)
T 1xcg_A          251 RKMIHEGPLTWRIS-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVA----T  325 (368)
T ss_dssp             SCEEEEEEEEECCS-SSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECS----S
T ss_pred             ceEEeecceEeeec-CCCeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeeccc----C
Confidence            34678999986533 2467899999999999888764310              000112457888876433322    3


Q ss_pred             CCceEEEEeC-----CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556           91 KPFAFELSTG-----EYTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        91 ~~~~f~i~~~-----~~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      .++.|.|...     ...|.|+|.|.++++.|+.+|+.++..
T Consensus       326 ~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~  367 (368)
T 1xcg_A          326 DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN  367 (368)
T ss_dssp             CSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            4677777643     478999999999999999999999864

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=98.13  E-value=7.7e-05  Score=53.92  Aligned_cols=101  Identities=16%  Similarity=0.196  Sum_probs=70.3

Q ss_pred             cccceEEEEEeeCC--CCCCeeeEEEEEECCeEEEEccCCCCCC--CCCccEEEeCCCeEEeecCcccCCCCceEEEEe-
Q 041556           25 SNPERSGWLTKQGD--YIKTWRRRWFILKQGKLFWFKDSHNITP--GSTPRGVIPVGTCLTVRGAEDLLNKPFAFELST-   99 (143)
Q Consensus        25 ~~~~~~G~L~k~~~--~~~~w~~r~~vL~~~~l~~y~~~~~~~~--~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~-   99 (143)
                      ...+..|.+....+  ..+..+.|+++|.++.|.+-+.......  .-..++.++|..+.+.+..+   +.++.|.|.. 
T Consensus       201 g~li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~y~~k~~i~l~~~~v~e~~~---~~~~~F~i~~~  277 (311)
T 1nty_A          201 GELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVE---GDPCKFALWVG  277 (311)
T ss_dssp             CCEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCCT---TCTTEEEEEES
T ss_pred             CCceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccCCCCceeEEeeeeeccceeeEEccC---CCCceEEEEeC
Confidence            44567787766532  2346789999999999988776431000  01234577888875443332   4578899976 


Q ss_pred             ----CCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          100 ----GEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       100 ----~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                          +...+.|+|.|++++..|+.+|+.++...
T Consensus       278 ~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e~  310 (311)
T 1nty_A          278 RTPTSDNKIVLKASSIENKQDWIKHIREVIQER  310 (311)
T ss_dssp             SSCCTTTCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCceEEEECCCHHHHHHHHHHHHHHHhhh
Confidence                24678999999999999999999998764

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=98.04  E-value=9.8e-05  Score=54.65  Aligned_cols=101  Identities=17%  Similarity=0.118  Sum_probs=68.1

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCC--------------CCCccEEEeCCCeEEeecCcccCC
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITP--------------GSTPRGVIPVGTCLTVRGAEDLLN   90 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~--------------~~~~~~~i~L~~~~~~~~~~~~~~   90 (143)
                      ...+++|.|...... +.++.|+++|.++.|.+-+.......              .......++|....+.+...   .
T Consensus       257 r~li~eG~l~~~~~~-~~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e~~~---~  332 (377)
T 3p6a_A          257 KKLVHEGPLTWRVTK-DKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVAT---D  332 (377)
T ss_dssp             SCEEEEEEEEEESSS-SCEEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEGGGEEEEECTT---C
T ss_pred             ceEEEECCcEEEecC-CCeEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEechhhhcccccc---c
Confidence            346789999776542 37899999999999988875432000              00112368888764433222   2


Q ss_pred             CCceEEEEe---CCeEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556           91 KPFAFELST---GEYTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus        91 ~~~~f~i~~---~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      ....|.+..   +...|.|.|.|.++++.|+.+|++++....
T Consensus       333 ~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~~k  374 (377)
T 3p6a_A          333 HKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLK  374 (377)
T ss_dssp             TTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHTCC
T ss_pred             cceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence            344555544   356788999999999999999999988654

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=97.97  E-value=0.00017  Score=53.56  Aligned_cols=101  Identities=20%  Similarity=0.157  Sum_probs=68.5

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCC--------------CCCCCccEEEeCCCeEEeecCcccCC
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNI--------------TPGSTPRGVIPVGTCLTVRGAEDLLN   90 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~--------------~~~~~~~~~i~L~~~~~~~~~~~~~~   90 (143)
                      ...+++|.|...... ...+.++++|.++.|.+-+...+.              .......+.|+|.++.+.+...   .
T Consensus       255 R~li~eG~l~~~~~~-~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~---d  330 (385)
T 1txd_A          255 RKMIHEGPLVWKVNR-DKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVAT---D  330 (385)
T ss_dssp             SCEEEEEEEEEESSS-SCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC----
T ss_pred             ceEEEECcEEEEcCC-CCeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCCcCCCCceeccccccccccc---C
Confidence            346789999865432 357899999999998887654310              0011234678888864433222   2


Q ss_pred             CCceEEEEeC---CeEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556           91 KPFAFELSTG---EYTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus        91 ~~~~f~i~~~---~~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      .++.|.|...   ...|.|+|.|.++++.|+.+|+.++....
T Consensus       331 ~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~  372 (385)
T 1txd_A          331 NKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVK  372 (385)
T ss_dssp             CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence            3466666542   46799999999999999999999987764

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=97.95  E-value=0.00015  Score=56.37  Aligned_cols=103  Identities=17%  Similarity=0.110  Sum_probs=67.2

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCC--------------CCCccEEEeCCCeEEeecCcccCC
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITP--------------GSTPRGVIPVGTCLTVRGAEDLLN   90 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~--------------~~~~~~~i~L~~~~~~~~~~~~~~   90 (143)
                      ...+++|.|...... ..++.++++|.++.|.+.+.......              .......|+|.++.+.+...   .
T Consensus       410 R~LI~eG~l~~~~~~-~k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~e~~~---d  485 (536)
T 3odw_A          410 KKLVHEGPLTWRVTK-DKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVAT---D  485 (536)
T ss_dssp             SCEEEEEEEEEESCC----CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEGGGEEEEECTT---C
T ss_pred             ceeeeecceEEEecC-CCeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeecccceeecccc---c
Confidence            346789999876542 36789999999999988875432000              00112368888864443222   2


Q ss_pred             CCceEEEEe---CCeEEEEEcCCHHHHHHHHHHHHHHHHhhcCC
Q 041556           91 KPFAFELST---GEYTMYFVADTEKEKEEWINSIGRAIVQHSRS  131 (143)
Q Consensus        91 ~~~~f~i~~---~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~  131 (143)
                      ....|.|..   +...|.|+|.|.+|++.|+.+|++++......
T Consensus       486 ~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~~~~  529 (536)
T 3odw_A          486 HKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKVP  529 (536)
T ss_dssp             TTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhCCCc
Confidence            233444443   35779999999999999999999999876443

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=97.95  E-value=1.1e-06  Score=67.54  Aligned_cols=97  Identities=21%  Similarity=0.156  Sum_probs=0.0

Q ss_pred             cceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCC--CCC-------------CccEEEeCCCeEEeecCcccCCC
Q 041556           27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNIT--PGS-------------TPRGVIPVGTCLTVRGAEDLLNK   91 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~--~~~-------------~~~~~i~L~~~~~~~~~~~~~~~   91 (143)
                      .+++|.|.+.    +.++.++++|.++.|.+.+..+...  .+.             ..+..|+|.+..+ ....+....
T Consensus       253 li~eG~l~~~----~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v-~~~~d~~~~  327 (510)
T 3jzy_A          253 LLHSGKLYKT----KSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLV-KLPTDPSSD  327 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEeceEEEc----CCCcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEE-eccCCCCcc
Confidence            4567777654    2468999999999998877544110  000             1134567777533 333232356


Q ss_pred             CceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           92 PFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        92 ~~~f~i~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +++|.|....+.|.|+|.|.+++..|+.+|++++...
T Consensus       328 ~~~F~i~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~  364 (510)
T 3jzy_A          328 EPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQY  364 (510)
T ss_dssp             -------------------------------------
T ss_pred             ccceeeeccceeEEeccCCHHHHHHHHHHHHHHHHHH
Confidence            8999999988999999999999999999999988765

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=97.94  E-value=7.8e-05  Score=54.63  Aligned_cols=93  Identities=19%  Similarity=0.099  Sum_probs=64.6

Q ss_pred             ccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCC----CccEEEeCCCeEEeecCccc-------------
Q 041556           26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGS----TPRGVIPVGTCLTVRGAEDL-------------   88 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~----~~~~~i~L~~~~~~~~~~~~-------------   88 (143)
                      ..+++|.|.+..+     +.++++|.++.|.+-+.....  +.    ..+..|+|..+.+.+..+..             
T Consensus       231 ~li~~G~l~~~~~-----~~~~~fLF~d~Ll~~k~~~~~--~~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~g~~~~  303 (346)
T 2z0q_A          231 VLCCHGELKNNRG-----VKLHVFLFQEVLVITRAVTHN--EQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRGAFSN  303 (346)
T ss_dssp             CEEEEEEEEETTS-----CEEEEEEESSEEEEEEEEEET--TEEEEEESSCCEEGGGCEEEECCTTTSCCCSCC--CCSH
T ss_pred             EEEEeceeEECCC-----cEEEEEECCCcEEEEEEeccC--CceeeeeecCCcchhhceeeecCCCccccCccccccccC
Confidence            3467899876322     789999999999888764310  11    12456788876444333210             


Q ss_pred             -CCCCceEEEEe----CCeEEEEEcCCHHHHHHHHHHHHHHH
Q 041556           89 -LNKPFAFELST----GEYTMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus        89 -~~~~~~f~i~~----~~~~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                       ...++.|.|..    .+..|.|+|.|.++.+.|+.+|+.|+
T Consensus       304 ~~~~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai  345 (346)
T 2z0q_A          304 NERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK  345 (346)
T ss_dssp             HHHTSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CcccccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence             02368999974    36789999999999999999999886

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=97.87  E-value=0.0004  Score=51.08  Aligned_cols=101  Identities=13%  Similarity=0.124  Sum_probs=68.4

Q ss_pred             cccceEEEEEeeCC-----CCCCeeeEEEEEECCeEEEEccCCCCC-----CCCCccEEEeCCCeEEeecCcccCCCCce
Q 041556           25 SNPERSGWLTKQGD-----YIKTWRRRWFILKQGKLFWFKDSHNIT-----PGSTPRGVIPVGTCLTVRGAEDLLNKPFA   94 (143)
Q Consensus        25 ~~~~~~G~L~k~~~-----~~~~w~~r~~vL~~~~l~~y~~~~~~~-----~~~~~~~~i~L~~~~~~~~~~~~~~~~~~   94 (143)
                      ...+..|.+....+     .....+.|+++|.++.|.+-+......     ..-..+..|+|..+.+.+..+   +.++.
T Consensus       205 ~~Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~---~~~~~  281 (354)
T 2rgn_B          205 GKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQ---GDPCR  281 (354)
T ss_dssp             CCEEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC--------CCEEEEEEEEGGGEEEEESGG---GCTTE
T ss_pred             ccccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCCCCCCCCceEEcceeeccceeeeeccC---CCCce
Confidence            44567787765432     123578999999999998877654100     011234577888764433322   35789


Q ss_pred             EEEEeC-----CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           95 FELSTG-----EYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        95 f~i~~~-----~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      |.|...     ...|.|+|.|.++.+.|+.+|+.++...
T Consensus       282 F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~  320 (354)
T 2rgn_B          282 FALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILESQ  320 (354)
T ss_dssp             EEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence            998752     3679999999999999999999987654

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=97.84  E-value=0.00019  Score=59.90  Aligned_cols=98  Identities=18%  Similarity=0.242  Sum_probs=72.1

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCC-------CCCCccEEEeCCCeEEeecCcccCCCCceEEE
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNIT-------PGSTPRGVIPVGTCLTVRGAEDLLNKPFAFEL   97 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~-------~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i   97 (143)
                      ...+++|.|.+.+..    +.|+++|.++.|.+-+......       ..-..++.++|..+.+.+ ..+....++.|.|
T Consensus       442 r~Li~eG~l~~~~~k----~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~-~~d~~~~~~~F~I  516 (1049)
T 3ksy_A          442 NEFIMEGTLTRVGAK----HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQIND-KDDTNEYKHAFEI  516 (1049)
T ss_dssp             SCCCCEEEEEETTCS----SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCC-CCCSSSCCSEEEE
T ss_pred             ceEEEeceEEEEccC----ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceEEEE-CCCCccccceEEE
Confidence            446789999887643    8999999999999988764210       012456788888864433 3332256899999


Q ss_pred             EeCC-eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556           98 STGE-YTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        98 ~~~~-~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      ...+ ..|.|+|.|.++++.|+.+|+.+...
T Consensus       517 ~~~~~~~~~L~A~S~eeK~~Wi~~I~~~q~k  547 (1049)
T 3ksy_A          517 ILKDENSVIFSAKSAEEKNNWMAALISLQYR  547 (1049)
T ss_dssp             CCTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            8765 58999999999999999999877543

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=97.63  E-value=0.0027  Score=46.99  Aligned_cols=104  Identities=9%  Similarity=0.014  Sum_probs=65.3

Q ss_pred             cccceEEEEEeeCC-----CCCCeeeEEEEEECCeEEE-EccCCCC----C-----------CCCCccEEEeCCCeEEee
Q 041556           25 SNPERSGWLTKQGD-----YIKTWRRRWFILKQGKLFW-FKDSHNI----T-----------PGSTPRGVIPVGTCLTVR   83 (143)
Q Consensus        25 ~~~~~~G~L~k~~~-----~~~~w~~r~~vL~~~~l~~-y~~~~~~----~-----------~~~~~~~~i~L~~~~~~~   83 (143)
                      ...+..|.+.....     ..+.-+.++++|.++.|.+ .+.....    .           ..-..+..|+|..+.+.+
T Consensus       236 g~ll~~~~~~~~~~~~~~~~~~k~~~~~~fLF~d~lll~~k~~~~~k~~~~~~~~~s~~~~~~~y~~k~~i~l~~~~v~~  315 (377)
T 1foe_A          236 GDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRA  315 (377)
T ss_dssp             GGEEEEEEEEESSCCHHHHTTCSSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEEC
T ss_pred             cceeeecceeeccCchhhccccccceEEEEEcCCeEEEEeccccccccccccccccccccCCCceeEeeeccccceEEEe
Confidence            44567787765421     1234568899999987655 4432100    0           011235688998875444


Q ss_pred             cCcccCCCCceEEEE--------eCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           84 GAEDLLNKPFAFELS--------TGEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        84 ~~~~~~~~~~~f~i~--------~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      ..+........|.|.        .+.+.|.|+|.|.++...|+.+|.+++...
T Consensus       316 ~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~~~  368 (377)
T 1foe_A          316 LPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILRDK  368 (377)
T ss_dssp             CCCTTTTSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccchhhHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhhHH
Confidence            333221223457775        235789999999999999999999998754

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=97.58  E-value=0.0023  Score=51.11  Aligned_cols=94  Identities=18%  Similarity=0.420  Sum_probs=67.2

Q ss_pred             cccceEEEEEeeCCC-CCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC-Ce
Q 041556           25 SNPERSGWLTKQGDY-IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG-EY  102 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~-~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~-~~  102 (143)
                      ..+++.|++.|+++. ...|++|++.|..+.+.+....      ..+...+.+.....+....  .+..++|.+... .+
T Consensus       557 ~~~i~~G~~~k~~g~f~~~~~rR~~~l~p~r~e~~~e~------~~~~~l~~~~~v~~v~k~~--i~~~~~l~~~~k~~k  628 (689)
T 3v5w_A          557 KDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEG------EAPQSLLTMEEIQSVEETQ--IKERKCLLLKIRGGK  628 (689)
T ss_dssp             SCCCEEEEEEEC-------CEEEEEEEETTEEEEECTT------SCCCEEEEGGGEEEEEEEE--SSSCEEEEEEETTTE
T ss_pred             CcceeecccccCCCcccchhhhhccccCCCcccccccC------CCCcceeeeccccccccCc--CCCCcceeeeecCCc
Confidence            457899999998764 4689999999999999887542      3455677777654443322  245678888765 67


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHHH
Q 041556          103 TMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       103 ~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      .+++.+++..++.+|+.+|+.+-.
T Consensus       629 ~f~~~t~~~~~~~~W~~~i~~~~~  652 (689)
T 3v5w_A          629 QFILQCDSDPELVQWKKELRDAYR  652 (689)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHHHHH
Confidence            899999999999999999987643

>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1

Probab=96.87  E-value=0.01  Score=36.89  Aligned_cols=103  Identities=11%  Similarity=0.101  Sum_probs=70.6

Q ss_pred             cccccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCC-CCCCccEEEeCCCeEEeecCcccCCCCceEEEEe
Q 041556           21 IEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNIT-PGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELST   99 (143)
Q Consensus        21 ~~~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~-~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~   99 (143)
                      .......++.|.+....+. +.-+.|+++|....+.+-+...... ..-.-+..|.+..+...+...+  +.+..|.|-.
T Consensus         4 L~~~G~Ll~q~~f~V~~~~-~k~~eR~vFLFe~~ilf~K~~~~~~~~~Y~~K~~ikl~~~~lte~~~~--~d~~kFeiw~   80 (119)
T 1fho_A            4 TGKLGRIIRHDAFQVWEGD-EPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTTD--EDTIVLQPQE   80 (119)
T ss_dssp             CCCCCCSSEEEEEEECSTT-CSCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEECTT--CCEEEEECCS
T ss_pred             hHHcCCccccCceEEEeCC-CCcceEEEEEecCcEEEEEEecCCCCCcEEEeeEEeeceeEEEecCCC--CCCcEEEEcc
Confidence            3445678899999887653 4568899999999999988762100 1123455888888644443331  3467788855


Q ss_pred             CC--eEEEE--EcCCHH-HHHHHHHHHHHHHH
Q 041556          100 GE--YTMYF--VADTEK-EKEEWINSIGRAIV  126 (143)
Q Consensus       100 ~~--~~~~~--~a~s~~-e~~~Wi~al~~~~~  126 (143)
                      .+  ..|.+  +|.|.+ ..+.|+..|+..+.
T Consensus        81 ~~~~~~~il~~qA~s~e~~K~~Wv~~I~~~~~  112 (119)
T 1fho_A           81 PGLPSFRIKPKDFETSEYVRKAWLRDIAEEQE  112 (119)
T ss_dssp             TTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCH
T ss_pred             CCCCceEEEeeecCCcHHHHHHHHHHHHHHHH
Confidence            43  45667  899999 99999999987433

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=96.70  E-value=0.014  Score=41.23  Aligned_cols=53  Identities=17%  Similarity=0.330  Sum_probs=40.4

Q ss_pred             EEEeCCCeEEeec--CcccCCCCceEEEEeCC--eEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           72 GVIPVGTCLTVRG--AEDLLNKPFAFELSTGE--YTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        72 ~~i~L~~~~~~~~--~~~~~~~~~~f~i~~~~--~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      ..++|.-|.+...  ..+  .+++.|.|..++  .+++|.|.+..++.+|+.+|+.++.
T Consensus       206 ~~ipL~m~~~tR~~~~~d--~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i~  262 (263)
T 1z87_A          206 KHVSLKMAYVSRRCTPTD--PEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  262 (263)
T ss_dssp             EEEESSSEEEEEECCSSC--SSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             cccCcceeeeeeeccccC--CCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence            5677776633322  223  478999999873  5689999999999999999998874

>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1

Probab=96.36  E-value=0.03  Score=37.21  Aligned_cols=53  Identities=17%  Similarity=0.330  Sum_probs=40.6

Q ss_pred             EEEeCCCeEEeec--CcccCCCCceEEEEeCC--eEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           72 GVIPVGTCLTVRG--AEDLLNKPFAFELSTGE--YTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        72 ~~i~L~~~~~~~~--~~~~~~~~~~f~i~~~~--~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      ..|+|.=|.+...  ..+  .+.+.|+|..++  .+.+|.|.+..++..|+.+|+..+.
T Consensus       121 ~~IPLkMayvtR~~~~tD--~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni~  177 (178)
T 2adz_A          121 KHVSLKMAYVSRRCTPTD--PEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  177 (178)
T ss_dssp             EEEETTTCEEEEECCSSC--CSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             eeecHHHHHHHHhccCCC--CCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence            5678876644322  222  478999999874  5689999999999999999998764

>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}

Probab=93.81  E-value=0.84  Score=29.99  Aligned_cols=84  Identities=17%  Similarity=0.161  Sum_probs=60.5

Q ss_pred             CeeeEEEEEE-----CCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEEEcCCHHHHHH
Q 041556           42 TWRRRWFILK-----QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEE  116 (143)
Q Consensus        42 ~w~~r~~vL~-----~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~a~s~~e~~~  116 (143)
                      .=|.|+.+|.     .+.+.+++.+......-....+.+|.....|+...   .....|.|.. ++.|+..|++..|...
T Consensus        63 ~KK~R~L~lav~~~~sgrV~lhK~K~N~ngsfsiGkTW~L~ELk~Ie~~~---~~~~gF~ltl-~K~Y~W~a~s~~Er~~  138 (171)
T 3hie_A           63 NKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDL---EISEGFILTM-SKKYYWETNSAKERTV  138 (171)
T ss_dssp             GEEEEEEEEEECTTCTTCEEEEEEEECTTSCEEEEEEEEGGGCCEEEECS---SCTTEEEEES-SSEEEEECSSHHHHHH
T ss_pred             CccceEEEEEEecCCCceEEEEEEEECCCCcEEeeeeeecccceeeeccC---CCCCcEEEEe-CCeEEEecCCHHHHHH
Confidence            4578887773     44678887766322222233477888766666533   2478888876 6999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 041556          117 WINSIGRAIVQHS  129 (143)
Q Consensus       117 Wi~al~~~~~~~~  129 (143)
                      .|.+|-+....+.
T Consensus       139 FI~sL~K~y~ky~  151 (171)
T 3hie_A          139 FIKSLITLYIQTF  151 (171)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHc
Confidence            9999998888775

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}

Probab=90.38  E-value=1.5  Score=31.45  Aligned_cols=85  Identities=16%  Similarity=0.164  Sum_probs=59.8

Q ss_pred             CCeeeEEEEEE-----CCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEEEcCCHHHHH
Q 041556           41 KTWRRRWFILK-----QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKE  115 (143)
Q Consensus        41 ~~w~~r~~vL~-----~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~a~s~~e~~  115 (143)
                      +.=|.|+.+|.     .+.+.+++.+.............+|.....|+..-   .....|.|.. ++.||..|.+..|..
T Consensus       132 kkKK~R~LcLaV~~d~sGRV~LhKaKeN~ngsFsIGKTW~L~ELk~Id~~~---~~~~gF~LTl-~K~YyW~A~s~kER~  207 (320)
T 3a58_A          132 ENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDL---EISEGFILTM-SKKYYWETNSAKERT  207 (320)
T ss_dssp             GGEEEEEEEEEECSSCTTCEEEEEEEECGGGCEEEEEEEEGGGCCEEEECS---SCTTEEEEES-SSEEEEEESSHHHHH
T ss_pred             cccCceEEEEEEecCCCceEEEEEEEecCCCceEecceechhhhhhhhccc---CCCCceEEEe-CCceEEecCCHHHHH
Confidence            34577887774     34588887765322122234477788766665321   3458888876 899999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 041556          116 EWINSIGRAIVQHS  129 (143)
Q Consensus       116 ~Wi~al~~~~~~~~  129 (143)
                      .+|..|-+....+.
T Consensus       208 ~FI~sLvKiy~KYt  221 (320)
T 3a58_A          208 VFIKSLITLYIQTF  221 (320)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999998888775

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=89.09  E-value=7.4  Score=31.79  Aligned_cols=94  Identities=13%  Similarity=0.086  Sum_probs=57.0

Q ss_pred             ceEEE-EEeeCCCCCCeeeEEEEEEC--CeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc----------------
Q 041556           28 ERSGW-LTKQGDYIKTWRRRWFILKQ--GKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL----------------   88 (143)
Q Consensus        28 ~~~G~-L~k~~~~~~~w~~r~~vL~~--~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~----------------   88 (143)
                      +..|. |.|.......-+.++|.|..  ..|+|....+       ....+.|+.+..+......                
T Consensus        17 L~~Gt~~~K~~~~~~~~k~~~frLd~d~~~l~W~~~~k-------~~~~l~I~~IkeIR~G~~s~~pk~~~~~e~~~~~~   89 (799)
T 2zkm_X           17 LSQGERFIKWDDETTVASPVILRVDPKGYYLYWTYQSK-------EMEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDF   89 (799)
T ss_dssp             HHHCEEEEEECTTTCCEEEEEEEECTTSCEEEEEETTS-------CEEEEEGGGEEEEEEGGGSCCCCSHHHHHHTTCSS
T ss_pred             HhCCCEEEEEcCCCcceeEEEEEEcCCCCEEEEccCCC-------cCceEeeeeeHHhhcCCCCCCCchHHHHHHhcccC
Confidence            34454 44444321122677888864  3556654222       2458888776444432111                


Q ss_pred             ---CCCCceEEEEeCC-----eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           89 ---LNKPFAFELSTGE-----YTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        89 ---~~~~~~f~i~~~~-----~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                         .....+|.|+...     ..+.|.|.++++++.|+..|+..+...
T Consensus        90 ~~~~~e~~~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~~~  137 (799)
T 2zkm_X           90 PDNSFLLKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKHP  137 (799)
T ss_dssp             TTCCGGGTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHCT
T ss_pred             cccccccceEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence               0124689998763     257899999999999999998776643

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=88.29  E-value=7.8  Score=31.76  Aligned_cols=94  Identities=11%  Similarity=0.110  Sum_probs=58.0

Q ss_pred             cceEE-EEEeeCCCCCCeeeEEEEEEC--CeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc--------------C
Q 041556           27 PERSG-WLTKQGDYIKTWRRRWFILKQ--GKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL--------------L   89 (143)
Q Consensus        27 ~~~~G-~L~k~~~~~~~w~~r~~vL~~--~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~--------------~   89 (143)
                      .+..| .|.|.+...+..+.+.|.|..  ..|+|....+      .....+.|+.+..+......              .
T Consensus        21 ~L~~G~~~~K~~~~s~~~~~~~f~lD~d~~~L~W~~~~k------~~~~~l~I~~I~eVR~G~~t~~pk~~klr~~~~~~   94 (816)
T 3qr0_A           21 QLIKGDKFLKWEEGSSGFIEILLRVDPKGYFLYWKIEGK------EDTQLLDLAYVRDIRCAKYAKPPKDKKIKEAGTNF   94 (816)
T ss_dssp             HHHHCEEEEEECTTCCCCEEEEEEECTTSCEEEECCTTC------SSCEEEEGGGEEEEEEGGGSCCCCSHHHHHHHHHS
T ss_pred             HHhCCCeEEEECCCCCcceeEEEEEcCCCCEEEEeCCCC------CcCcEEEeeeeeeeecCCcCCCCccHHHHHHHHhc
Confidence            34445 555555543334678888874  4555644322      11367888865444333221              0


Q ss_pred             C------CCceEEEEeCC-----eEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           90 N------KPFAFELSTGE-----YTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        90 ~------~~~~f~i~~~~-----~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      +      ...+|.|+...     ..+.|.|.+.++++.|+..|+..+.
T Consensus        95 g~~~~~~e~r~fTIvyg~~~~nL~~l~LvA~s~e~A~~W~~gL~~L~~  142 (816)
T 3qr0_A           95 GSSNIPLQDKCVTICHGYNYIDLEWTHLVAENSSVAKKWSEEVFSYAY  142 (816)
T ss_dssp             SCTTSCHHHHEEEEEECSSSSSCEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             CCCcccccccEEEEEECCCcccceEEEEeeCCHHHHHHHHHHHHHHHH
Confidence            1      24689998763     2348999999999999999987654

>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A

Probab=87.40  E-value=5  Score=27.06  Aligned_cols=35  Identities=17%  Similarity=0.385  Sum_probs=29.1

Q ss_pred             ceEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556           93 FAFELSTG-EYTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        93 ~~f~i~~~-~~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      ..|.|... +..+-|.|.|+.+...|++.|+.-+..
T Consensus       116 laFSii~~~~~~L~fvA~s~~~~~~W~DGL~~Llg~  151 (203)
T 3a98_B          116 LAFSILYDSNCQLNFIAPDKHEYCIWTDGLNALLGK  151 (203)
T ss_dssp             GEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEecCCCceEEEecCCHHHHHHHHHHHHHHhcC
Confidence            58888765 467889999999999999999766553

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=86.23  E-value=5.4  Score=33.00  Aligned_cols=94  Identities=11%  Similarity=0.138  Sum_probs=55.9

Q ss_pred             cceEEE-EEeeCCCCCCeeeEEEEEEC--CeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc----------------
Q 041556           27 PERSGW-LTKQGDYIKTWRRRWFILKQ--GKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED----------------   87 (143)
Q Consensus        27 ~~~~G~-L~k~~~~~~~w~~r~~vL~~--~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~----------------   87 (143)
                      .+..|- +.|.+.....-+.++|.|..  ..|+|.. +.      .....+.|..+..+.....                
T Consensus        20 ~L~~Gt~f~K~~~~~~~~k~~~frLD~d~~~L~W~~-~~------ke~~~l~Is~IkeIR~G~~a~~pKd~klr~~~~~~   92 (885)
T 3ohm_B           20 TLRRGSKFIKWDEETSSRNLVTLRVDPNGFFLYWTG-PN------MEVDTLDISSIRDTRTGRYARLPKDPKIREVLGFG   92 (885)
T ss_dssp             HHHHCEEEEEECTTCCSCCEEEEEECTTSCEEEEEC-GG------GCEEEEEGGGEEEEEETTTSCCCCSHHHHHCC---
T ss_pred             HHhCCCeEEEECCCCCCcEEEEEEECCCCCEEEEeC-CC------CCCceEeeehhhhhhcCcCCCCCccHHHHHHhccC
Confidence            445554 44554432233667777763  3555543 22      1235677776544433221                


Q ss_pred             ---cCCCCceEEEEeCC-----eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556           88 ---LLNKPFAFELSTGE-----YTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        88 ---~~~~~~~f~i~~~~-----~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                         ......+|.|+...     ..+.|.|.+.++++.|+..|+..+..
T Consensus        93 ~~~~~~e~r~fTIvyg~d~~n~~~LdLVA~s~e~a~~W~~gL~~L~~~  140 (885)
T 3ohm_B           93 GPDARLEEKLMTVVSGPDPVNTVFLNFMAVQDDTAKVWSEELFKLAMN  140 (885)
T ss_dssp             ------CTTEEEEEECSSGGGCEEEEEEESSSSHHHHHHHHHHHHHHC
T ss_pred             cccCcccccEEEEEECCCCccceEEEEEeCChHHHHHHHHHHHHHHhh
Confidence               11235789998764     25889999999999999999876553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	2e-23
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	1e-22
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	2e-22
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	8e-21
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	3e-19
d1wi1a_	126	b.55.1.1 (A:) Calcium-dependent activator protein	2e-17
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	4e-17
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	5e-17
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	9e-17
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	5e-16
d1v88a_	130	b.55.1.1 (A:) Oxysterol binding protein-related pr	5e-16
d2coca1	99	b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain cont	1e-15
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	2e-15
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	2e-15
d1unqa_	118	b.55.1.1 (A:) Rac-alpha serine/threonine kinase {H	4e-15
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	4e-15
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	4e-15
d1wgqa_	109	b.55.1.1 (A:) FYVE, RhoGEF and PH domain containin	2e-14
d1w1ha_	147	b.55.1.1 (A:) 3-phosphoinositide dependent protein	4e-14
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	6e-14
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	1e-13
d2dyna_	111	b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId	4e-13
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	9e-13
d1qqga1	103	b.55.1.2 (A:12-114) Insulin receptor substrate 1,	1e-12
d2elba2	101	b.55.1.1 (A:274-374) DCC-interacting protein 13-al	2e-12
d1v5pa_	126	b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId:	6e-12
d1omwa2	119	b.55.1.1 (A:550-668) G-protein coupled receptor ki	1e-11
d2fjla1	101	b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phosph	2e-11
d2cofa1	95	b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens)	4e-11
d1x1fa1	136	b.55.1.1 (A:8-143) Signal-transducing adaptor prot	8e-11
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	1e-10
d1btna_	106	b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus),	1e-10
d2coaa1	112	b.55.1.1 (A:8-119) Protein kinase c, d2 type {Huma	3e-10
d1wg7a_	150	b.55.1.1 (A:) Dedicator of cytokinesis protein 9,	5e-10
d1wjma_	123	b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens),	5e-10
d1v61a_	132	b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (M	1e-08
d1maia_	119	b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus	1e-06
d2dfka2	162	b.55.1.1 (A:240-401) Rho guanine nucleotide exchan	3e-06
d1zc3b1	109	b.55.1.1 (B:171-279) Exocyst complex protein EXO84	3e-06
d1fhoa_	119	b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis ele	1e-05
d1ki1b2	142	b.55.1.1 (B:1439-1580) GEF of intersectin {Human (	5e-04
d1xcga2	140	b.55.1.1 (A:942-1081) Rho guanine nucleotide excha	0.002
d1dbha2	133	b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {H	0.003

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 2e-23
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           S   + G+LTKQG  +KTW+ RWF L + +L +FKD  +      P  ++ +  C  V+ 
Sbjct: 2   SLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSP----EPIRILDLTECSAVQF 57

Query: 85  AEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQ 127
                 +   F L     T Y  A T  E +EWI  +   + Q
Sbjct: 58  DYS-QERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQ 99

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (206), Expect = 1e-22
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 6/102 (5%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE-- 86
           ++G+  KQG  +K W+RR+F L +  + +FK          P  VIP+     V+  +  
Sbjct: 5   KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEK----EPLRVIPLKEVHKVQECKQS 60

Query: 87  DLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQH 128
           D++ +   FE+ T   T Y  AD+ +E   WI ++  AIV  
Sbjct: 61  DIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQ 102

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.8 bits (206), Expect = 2e-22
 Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 28/127 (22%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
            NP+R GWL K G  +KTW+RRWFIL    L++F+ +        PRG+IP+        
Sbjct: 3   FNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYT----TDKEPRGIIPLENLSIREV 58

Query: 85  AEDLLNKPFAFELST----------------------GEYTMYFVADTEKEKEEWINSIG 122
            +    KP  FEL                                A + +EKEEW+ SI 
Sbjct: 59  LDP--RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIK 116

Query: 123 RAIVQHS 129
            +I +  
Sbjct: 117 ASISRDP 123

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 8e-21
 Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           R G+L K+G    TW+  W +L +  + ++K   +     +P+G+IP+         +D 
Sbjct: 7   REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDN----SPKGMIPLKGSTLTSPCQDF 62

Query: 89  LNKPFAFE-LSTGEYTMYFVADTEKEKEEWINSIGRAI 125
             + F F+  +T +   +F A   +E++ W+  I +AI
Sbjct: 63  GKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAI 100

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (185), Expect = 3e-19
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 13/110 (11%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           S P + GWL KQ   +K W++R+F+L+  +L+++KD  +      P+G + +  C     
Sbjct: 6   SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDT----KPQGCMYLPGCTIKEI 61

Query: 85  AE-DLLNKPFAFEL--------STGEYTMYFVADTEKEKEEWINSIGRAI 125
           A        F FE+          G+ +   +A ++ E EEW+  + R  
Sbjct: 62  ATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 2e-17
 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 3/111 (2%)

Query: 25  SNPERSGWLTKQGDYI-KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR 83
           S  + SG+L   G  + K W++R+F+L Q   + F         + P+ ++ +       
Sbjct: 6   SGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDY 65

Query: 84  GAE--DLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSV 132
                 L      F       T+ F +D E+++  W+ ++ RA  Q  + V
Sbjct: 66  TDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPV 116

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.3 bits (176), Expect = 4e-17
 Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 25  SNPERSGWLTKQGD----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCL 80
               ++G+L K+          W++RW  L +   +++    +       +G   +    
Sbjct: 102 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKD----KQQKGEFAIDGYD 157

Query: 81  TVRGAEDLL--NKPFAFELST-GEYTMYFVADTEKEKEEWINSIGRAI 125
                       K   FE+    +    F A + K+ EEW+  +   +
Sbjct: 158 VRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 205

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (173), Expect = 5e-17
 Identities = 19/130 (14%), Positives = 41/130 (31%), Gaps = 30/130 (23%)

Query: 30  SGWLTKQGD-----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTV-- 82
                K+           +++  F+L   KL +++         + +G I V     V  
Sbjct: 6   ESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVET 65

Query: 83  -----------------------RGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWIN 119
                                       +   P+ F++   E  +Y  + TE+ ++ WI+
Sbjct: 66  VVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIH 125

Query: 120 SIGRAIVQHS 129
            +   I  +S
Sbjct: 126 QLKNVIRYNS 135

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (168), Expect = 9e-17
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 9/112 (8%)

Query: 21  IEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCL 80
           +E      + G+L KQG   K W+ R F+L++   F      +    + P G   +   L
Sbjct: 5   VELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEE-NRPVGGFSLRGSL 63

Query: 81  TVRGAEDLLN--------KPFAFELSTGEYTMYFVADTEKEKEEWINSIGRA 124
                ++ +               ++  +   Y  A ++ E+ EWI +I + 
Sbjct: 64  VSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL 115

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 5e-16
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 7/102 (6%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           + G L KQG   K W+ R FIL++   +             P G I +  C+      + 
Sbjct: 4   KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPA--GAEDPLGAIHLRGCVVTSVESNS 61

Query: 89  LNKPFA-----FELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
             +          ++  E   +  A T KE+ EWI +I  A 
Sbjct: 62  NGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 103

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 5e-16
 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 31/125 (24%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           S    + WL  +G  +K+W + W +LK G L  +K   N        G + +  C  +  
Sbjct: 6   SGIVMADWLKIRG-TLKSWTKLWCVLKPGVLLIYKTQKN----GQWVGTVLLNACEIIER 60

Query: 85  AEDLLNKPFAFEL------------------------STGEYTMYFVADTEKEKEEWINS 120
                   F F+L                              +   A +E +   W+++
Sbjct: 61  PSK--KDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDA 118

Query: 121 IGRAI 125
           +  A+
Sbjct: 119 LELAL 123

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 1e-15
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 1/95 (1%)

Query: 30  SGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLL 89
            G L       +TW   W  +                G  PR +      L+V   E+ L
Sbjct: 4   CGPLRLSESG-ETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERL 62

Query: 90  NKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRA 124
           +    ++L   + + Y  A + + +++W+ ++  A
Sbjct: 63  DSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTA 97

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 2e-15
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 11/118 (9%)

Query: 28  ERSGWLT----------KQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVG 77
            + GWL           + G  I+ W++ + +L+   L+ +KD    T  S     I V 
Sbjct: 2   AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVN 61

Query: 78  TCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTES 135
            C  +  +     +   F L+T +    F A+   +   WI +I  +   +      +
Sbjct: 62  AC-LIDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSNLNEEDTGVT 118

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 2e-15
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 10/104 (9%)

Query: 29  RSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED 87
           +SGWL K      + +++RW       + ++ +   +      +G+IP+    TVR    
Sbjct: 3   KSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYS----KGIIPLSAISTVRV--- 55

Query: 88  LLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
                  FE+ T + T  F  + E+E+ +WI+ +  A+   S +
Sbjct: 56  --QGDNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKSQSLT 97

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 4e-15
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 9/109 (8%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG--AE 86
           + GWL K+G+YIKTWR R+F+LK    F     +   P    +   P+      +    +
Sbjct: 9   KEGWLHKRGEYIKTWRPRYFLLKNDGTFIG---YKERPQDVDQREAPLNNFSVAQCQLMK 65

Query: 87  DLLNKPFAFELSTGEYTM----YFVADTEKEKEEWINSIGRAIVQHSRS 131
               +P  F +   ++T      F  +T +E+EEW  +I        + 
Sbjct: 66  TERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKKQ 114

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 4e-15
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 27  PERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTV-RG 84
               GWL KQ    ++ W+RRWF+L    LF++KDS       +  G + + +      G
Sbjct: 9   VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSRE----ESVLGSVLLPSYNIRPDG 64

Query: 85  AEDLLNKPFAFELST-GEYTMYFVADTEKEKEEWINSIGRAI 125
                 + F F     G  T    ADT ++   W+ ++GRA 
Sbjct: 65  PGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS 106

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.6 bits (156), Expect = 4e-15
 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 8/107 (7%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           S     G L K+G ++K W+ RWF+L + K       H     +  +GVI +     V  
Sbjct: 6   SGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHR--MDTECKGVIDLAEVEAVAP 63

Query: 85  AEDLLNKP------FAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
               +  P        F++ T      F A      ++W++ I   +
Sbjct: 64  GTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCL 110

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.8 bits (151), Expect = 2e-14
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 4/107 (3%)

Query: 25  SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           S    SG+L +     K W+  WF++K   L+ +  S +           P+        
Sbjct: 6   SGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASED----VAALESQPLLGFTVTLV 61

Query: 85  AEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
            ++         L  G     F AD     + WI++     V    S
Sbjct: 62  KDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVSGPSS 108

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 4e-14
 Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 12/109 (11%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           + G + K+       RRR  +L +G   ++ D          +G IP    L        
Sbjct: 50  KMGPVDKRKG--LFARRRQLLLTEGPHLYYVD----PVNKVLKGEIPWSQELRPEA---- 99

Query: 89  LNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESEV 137
                 F + T   T Y   D      +W   I     Q  +S  ++ V
Sbjct: 100 -KNFKTFFVHTPNRTYYL-MDPSGNAHKWCRKIQEVWRQRYQSHPDAAV 146

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 6e-14
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 29  RSGWLTKQGD----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           + G+L K+      +   W++RW ++ +G  +++ +  +      P+G   +        
Sbjct: 3   KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKS----KQPKGTFLIKGYSVRMA 58

Query: 85  AEDLLNK---PFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
                +          S    T  F A +  E  +W++ I   +
Sbjct: 59  PHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLL 102

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 61.1 bits (147), Expect = 1e-13
 Identities = 12/113 (10%), Positives = 34/113 (30%), Gaps = 12/113 (10%)

Query: 25  SNPERSGWLTKQGDYI--------KTWRRRWFILKQGKLFWFKDSHNITPGST----PRG 72
           +     G++T++ ++         ++W + +   K G++ ++KD                
Sbjct: 6   AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEP 65

Query: 73  VIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
              +        ++    K                A  + E  +W+ S+    
Sbjct: 66  SYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQS 118

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 4e-13
 Identities = 22/104 (21%), Positives = 32/104 (30%), Gaps = 6/104 (5%)

Query: 29  RSGWLTKQGDYI--KTWRRRWFILKQGKLFWFKDSHNITPG----STPRGVIPVGTCLTV 82
           R GWLT     I     +  WF+L    L W+KD                +  V      
Sbjct: 5   RKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMS 64

Query: 83  RGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIV 126
                 L       +      +    +T++E + W  S  RA V
Sbjct: 65  SKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGV 108

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.4 bits (140), Expect = 9e-13
 Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 11/104 (10%)

Query: 29  RSGWLTKQGD----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
           ++G+L K+          W++RW  L +   +++    +       +G   +        
Sbjct: 11  KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKD----KQQKGEFAIDGYDVRMN 66

Query: 85  AEDLLNKPFAFE---LSTGEYTMYFVADTEKEKEEWINSIGRAI 125
                +          +  +    F A + K+ EEW+  +   +
Sbjct: 67  NTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 110

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 1e-12
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKD--------SHNITPGSTPRGVIPVGTCL 80
           + G+L K     K+  +R+F+L+                        S P+  IP+ +C 
Sbjct: 4   KVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCF 59

Query: 81  TVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSI 121
            +              L T +      AD+E E++ W  ++
Sbjct: 60  NINKR-ADSKNKHLVALYTRDEHFAIAADSEAEQDSWYQAL 99

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 2e-12
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 27  PERSGWL---TKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR 83
             ++G+L    K G    TW R+++  + G L                  + +  C  + 
Sbjct: 5   TRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR-----GDVAGGLAMDIDNCSVMA 59

Query: 84  GAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRA 124
              +     F      G+ +    A+++K+ EEWI +I   
Sbjct: 60  VDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNI 100

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.0 bits (136), Expect = 6e-12
 Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 30  SGWLTKQGDYI-KTWRRRWFILKQGK---LFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
            G+L  + +     + RR+FIL       L++  +  N+  G+   G + +     V  A
Sbjct: 18  CGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIA 77

Query: 86  E--DLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
                   PF F ++      +  A+ +K+ ++W+ ++ +A      S
Sbjct: 78  TPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKSGPSS 125

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 1e-11
 Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 8/111 (7%)

Query: 25  SNPERSGWLTKQG-DYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR 83
            +    G+++K G  ++  W+RR+F L   +L W  +        T   +  V       
Sbjct: 8   KDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEAPQSLLTMEEIQSVEETQIKE 67

Query: 84  GAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTE 134
                  +        G        D++ E  +W   +  A  +  + V  
Sbjct: 68  -------RKCLLLKIRGGKQFVLQCDSDPELVQWKKELRDAYREAQQLVQR 111

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.0 bits (131), Expect = 2e-11
 Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           ++G L  +      W   +F+L   K+++ +++ +       RGV+ V  C      E  
Sbjct: 3   KNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSS----DLLRGVLDVPACQIAIRPEGK 58

Query: 89  LNKPFAFELST---GEYTMYFVADTEKEKEEWINSIGRAI 125
            N+ F F +S     ++++   AD+++E ++W+  I    
Sbjct: 59  NNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA 98

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 4e-11
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 6/98 (6%)

Query: 28  ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED 87
           E S +L    +    W+ RW  ++   L +++D +     S             V     
Sbjct: 2   ETSSYLNVLVN--SQWKSRWCSVRDNHLHFYQDRNR----SKVAQQPLSLVGCEVVPDPS 55

Query: 88  LLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
             +      L  GE      A + +E   W+  +    
Sbjct: 56  PDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSES 93

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 8e-11
 Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 30  SGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLL 89
            G+L  +    + +   W  L+   LF++ D  +I         + +     +       
Sbjct: 14  EGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSI----IYVDKLDIVDLTCLTEQNSTE 69

Query: 90  NKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
                F L   +  +    +  +  EEW   I    
Sbjct: 70  KNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVT 105

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (128), Expect = 1e-10
 Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 17/116 (14%)

Query: 25  SNPERSGWL--------TKQGDYIKTWRRRWFILKQG------KLFWFKDSHNITPGSTP 70
            + +R G L                 W++   +L++       +L +F       P  + 
Sbjct: 16  VDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSI 75

Query: 71  RGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMY-FVADTEKEKEEWINSIGRAI 125
              +     +      ++  K   F L       Y        +K  W+  I   +
Sbjct: 76  P--LSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCV 129

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 1e-10
 Identities = 14/104 (13%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 31  GWLTKQGDYI--------KTWRRRWFILKQGKLFWFKDSHNITPGST--PRGVIPVGTCL 80
           G+L ++ ++         ++W   + ++   ++ ++KD+ +   G        + +   +
Sbjct: 3   GFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAI 62

Query: 81  TVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRA 124
                +    K       +      F A  ++E   WI +I  A
Sbjct: 63  CEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 3e-10
 Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 8/103 (7%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE-- 86
           R GW+    +     +R ++ L    +  F+++      +     IP+   LTV  A+  
Sbjct: 3   REGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNT----TNRYYKEIPLSEILTVESAQNF 58

Query: 87  --DLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQ 127
                               YFV +         +  G    +
Sbjct: 59  SLVPPGTNPHCFEIVTANATYFVGEMPGGTPGGPSGQGAEAAR 101

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 5e-10
 Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 9/117 (7%)

Query: 28  ERSGWLTKQGD------YIKTWRRRWFILKQGKLFWFKDS--HNITPGSTPRGVIPVGTC 79
            + GWL K          +++++RR+F L Q     +  +   +      P+G I + +C
Sbjct: 19  TKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSC 78

Query: 80  LTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESE 136
           + V     +    F       + +    AD+E E EEWI  + + +  +  +  + +
Sbjct: 79  MGVVQNNKVRRFAF-ELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEK 134

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 5e-10
 Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 10/111 (9%)

Query: 25  SNPERSGWLTKQGDY--------IKTWRRRWFILKQGKLFWFKDSHNITP--GSTPRGVI 74
           S  +  G L ++ +          ++W+  + +L++G L ++KD+   +          +
Sbjct: 6   SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPV 65

Query: 75  PVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
            +         +    K              F A  E E   W+  +  AI
Sbjct: 66  SLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI 116

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} Length = 132

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (114), Expect = 1e-08
 Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 11/114 (9%)

Query: 21  IEFW--------SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRG 72
           I+ W         N      +  Q    +    R+F+L    L     S  ++       
Sbjct: 14  IQAWEGDDIKTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQG- 72

Query: 73  VIPVGTCLTVRGAEDLLNKPFAFELST-GEYTMYFVADTEKEKEEWINSIGRAI 125
                  + V   +++      FE++      +    +  ++ +EW+  + R  
Sbjct: 73  -KIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLT 125

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.2 bits (99), Expect = 1e-06
 Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 14/111 (12%)

Query: 28  ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR---- 83
            +   L K         R + + +  K  W +        S    +  +     VR    
Sbjct: 12  LKGSQLLKVKSSSWRRERFYKLQEDCKTIWQESRKV--MRSPESQLFSIEDIQEVRMGHR 69

Query: 84  -------GAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQ 127
                    +   ++ F+        T+  +A +  + + W+  + R I+ 
Sbjct: 70  TEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGL-RKIIH 119

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 162

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.1 bits (98), Expect = 3e-06
 Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 7/110 (6%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTC-----LTVR 83
            +G +          ++R F L   ++   K           +G I +           R
Sbjct: 29  YTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGR 88

Query: 84  GAEDLLNKPFAFELS--TGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
             +  ++   AF+L     E    F A   +EK  W+ +           
Sbjct: 89  DDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQED 138

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 3e-06
 Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 8/106 (7%)

Query: 32  WLTKQGDYIKTWRRRWFILKQGKLFWFKD-------SHNITPGSTPRGVIPVGTCLTVRG 84
           +L   GD ++        L++   F   D                   + P+     V  
Sbjct: 3   YLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNV 62

Query: 85  AEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSR 130
            ++       F+L     +  F A+  K K EW+  +       S 
Sbjct: 63  KDNP-PMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSD 107

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 12/110 (10%), Positives = 27/110 (24%), Gaps = 11/110 (10%)

Query: 29  RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
           R               R  F+ +   +F  +D+    P  T    I +            
Sbjct: 12  RHDAFQVWEGDEPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKY----NIRQH 67

Query: 89  LNKPFAFELSTG-----EYTMYFV--ADTEKEKEEWINSIGRAIVQHSRS 131
                   L         + +       +E  ++ W+  I     +++  
Sbjct: 68  TTDEDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQEKYAAE 117

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Length = 142

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 5e-04
 Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 18/116 (15%)

Query: 29  RSGWLTKQGDYIKTWRRRWFIL---------KQGKLFWFKDSHNITPGST----PRGVIP 75
            SG L K     K  +  +  L             L         +P S      +  I 
Sbjct: 27  HSGKLYK----AKNNKELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYMYKTPIF 82

Query: 76  VGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRS 131
           +   + V+   D       F +S  +      A++  E+  W+  I  A   +  +
Sbjct: 83  L-NEVLVKLPTDPSGDEPIFHISHIDRVYTLRAESINERTAWVQKIKAASELYIET 137

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 140

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.002
 Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 22/115 (19%)

Query: 29  RSGWLTKQGDYIKTWRRRWFIL--------KQGKLFWFKDSHNITPGS-----TPRGVIP 75
             G LT +    KT      +L        KQ +    K       GS     T   V+ 
Sbjct: 27  HEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLK 86

Query: 76  VGTCLTVRGAEDLLNKPFAFEL-----STGEYTMYFVADTEKEKEEWINSIGRAI 125
           +   L       +     AF +              VA T  +K  W+  +  A+
Sbjct: 87  LNAVLI----RSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAV 137

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 0.003
 Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 15/128 (11%)

Query: 1   MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKD 60
           M  I + + G +         EF       G LT+ G        R   L  G +   K 
Sbjct: 5   MNEIQKNIDGWEGKDIGQCCNEFI----MEGTLTRVGAK----HERHIFLFDGLMICCKS 56

Query: 61  SHNITPGSTP-------RGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKE 113
           +H               +    +         +    K     +   E ++ F A + +E
Sbjct: 57  NHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEE 116

Query: 114 KEEWINSI 121
           K  W+ ++
Sbjct: 117 KNNWMAAL 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.94
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.91
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.91
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	99.91
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.9
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.9
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.9
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.9
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.89
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.88
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	99.88
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.88
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	99.87
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.87
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.87
d1wi1a_	126	Calcium-dependent activator protein for secretion,	99.87
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.86
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.85
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	99.85
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	99.85
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.84
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	99.84
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.84
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	99.83
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.82
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	99.81
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	99.8
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	99.75
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	99.52
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	99.31
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	99.3
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	99.06
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	98.96
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	98.81
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	98.76
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	98.66
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	98.61
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	98.52
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	98.21
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	98.07
d2zkmx3	131	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	94.6
d1foea2	162	GEF of TIAM1 (T-Lymphoma invasion and metastasis i	92.94

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-25  Score=137.21  Aligned_cols=96  Identities=32%  Similarity=0.587  Sum_probs=85.9

Q ss_pred             cceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEE
Q 041556           27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYF  106 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~  106 (143)
                      +.++|||.|+++..+.|++|||||.++.|+||+++.    +..+.+.|+|.+|..+..... ..++++|+|.+++++|+|
T Consensus         4 ~~KeG~L~K~~~~~k~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~~v~~~~~-~~~~~~F~i~~~~r~~~l   78 (100)
T d1faoa_           4 GTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQM----SPEPIRILDLTECSAVQFDYS-QERVNCFCLVFPFRTFYL   78 (100)
T ss_dssp             TCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTT----CSSCSEEEEGGGCCEEEEECS-SSSSSEEEEEETTEEEEE
T ss_pred             ccEEEEEEEeCCCCCCceEEEEEEECCEEEEEeccC----CccCceEEechheEEEEeccc-cccccccccccCCeEEEE
Confidence            578999999998888999999999999999999988    778999999999866654433 367899999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHHHHh
Q 041556          107 VADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus       107 ~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      +|+|++++++|+.||+.++.+
T Consensus        79 ~a~s~~~~~~Wi~ai~~~i~~   99 (100)
T d1faoa_          79 CAKTGVEADEWIKILRWKLSQ   99 (100)
T ss_dssp             ECSSHHHHHHHHHHHHHHHHT
T ss_pred             EeCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999998864

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3e-24  Score=133.62  Aligned_cols=95  Identities=21%  Similarity=0.377  Sum_probs=82.7

Q ss_pred             ceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcc-----cCCCCceEEEEeCCe
Q 041556           28 ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED-----LLNKPFAFELSTGEY  102 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~-----~~~~~~~f~i~~~~~  102 (143)
                      +++|||.|+++..+.|++|||||.++.|+||+++.    +..+.+.|+|..+..+....+     ...++|+|+|.++++
T Consensus         2 lk~GwL~k~~~~~~~wkkRwFvL~~~~L~YYk~~~----~~~p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~~r   77 (112)
T d2coaa1           2 LREGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNT----TNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTANA   77 (112)
T ss_dssp             SEEEEEEECCSSSCCCEEEEEEECSSEEEEESSSS----CSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSSC
T ss_pred             ceEEEEEEECCCCCCeeEEEEEEEcceEEEEeccC----CCccceEEeeeccccccccccccccccCCCccEEEEEeCCe
Confidence            68999999999889999999999999999999998    788999999998766665433     234679999999999


Q ss_pred             EEEEEc-----------CCHHHHHHHHHHHHHHHH
Q 041556          103 TMYFVA-----------DTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       103 ~~~~~a-----------~s~~e~~~Wi~al~~~~~  126 (143)
                      +|||.+           ++++++++|+.||++|++
T Consensus        78 tyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A~~  112 (112)
T d2coaa1          78 TYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALM  112 (112)
T ss_dssp             CCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGG
T ss_pred             EEEEecCCccccccccccChHHHHHHHHHHHHhhC
Confidence            999865           778899999999998853

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.1e-23  Score=128.67  Aligned_cols=95  Identities=22%  Similarity=0.489  Sum_probs=84.5

Q ss_pred             ceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC---CeEE
Q 041556           28 ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG---EYTM  104 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~---~~~~  104 (143)
                      +++|||++++...+.|++|||+|.++.|+||+++.    +..+.+.++|.++.++.......+++++|.|.++   .+.+
T Consensus         2 iK~G~L~k~~~~~k~W~kR~fvL~~~~L~yy~~~~----~~~~~~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~   77 (101)
T d2fjla1           2 IKNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETS----SDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSL   77 (101)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEETTEEEECCCCS----CTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCE
T ss_pred             ceEEEEEEEcCCCCCCeEEEEEEECCEEEEEeccc----cceecceEEcCCceeEeeeeecccccceeEEeccccccEEE
Confidence            68999999998888999999999999999999887    7889999999998776665555578899999875   3679


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHH
Q 041556          105 YFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       105 ~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      +|+|+|++|+.+|+.||++++.
T Consensus        78 ~~~a~s~~e~~~Wi~ai~~~~~   99 (101)
T d2fjla1          78 DVAADSQEELQDWVKKIREVAQ   99 (101)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHT
T ss_pred             EEEeCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999875

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.4e-23  Score=126.83  Aligned_cols=104  Identities=24%  Similarity=0.543  Sum_probs=91.0

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC-CeE
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG-EYT  103 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~-~~~  103 (143)
                      ..++++|||.+++...+.|++|||||.++.|+||+++.    +..+.+.|+|.++..+....+...+++.|.|... ++.
T Consensus         3 ~~~ikeG~L~k~~~~~k~WkkryfvL~~~~L~~y~~~~----~~~p~~~i~l~~~~~~~~~~~~~~~~~~f~l~~~~~~~   78 (113)
T d1plsa_           3 PKRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKS----DNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQD   78 (113)
T ss_dssp             CCCSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTT----CSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEE
T ss_pred             CCceEEEEEEEeCCCCCCceEEEEEEECCEEEEEecCC----ccccceEEECccCeEEeeecccCCcceEEEEecCCCeE
Confidence            45789999999998889999999999999999999988    7889999999998776666555577899998775 678


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHhhcCCC
Q 041556          104 MYFVADTEKEKEEWINSIGRAIVQHSRSV  132 (143)
Q Consensus       104 ~~~~a~s~~e~~~Wi~al~~~~~~~~~~~  132 (143)
                      ++|+|+|++|+.+|+.+|+.++.......
T Consensus        79 ~~~~a~s~~e~~~Wi~ai~~ai~~~~~~~  107 (113)
T d1plsa_          79 HFFQAAFLEERDAWVRDINKAIKCIEGLE  107 (113)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCcCCC
Confidence            99999999999999999999998875543

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=6.6e-23  Score=126.60  Aligned_cols=100  Identities=21%  Similarity=0.340  Sum_probs=86.1

Q ss_pred             ccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC-e
Q 041556           24 WSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE-Y  102 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~-~  102 (143)
                      ...++++|||++++...+.|++|||+|.++.|+||++..    ...+...+.|.++..+... +...++++|.|..++ +
T Consensus         5 ~~~~~~~G~L~k~~~~~~~W~kr~~vL~~~~L~~~k~~~----~~~~~~~i~l~~~~~~~~~-~~~~~~~~F~i~~~~~~   79 (109)
T d1wgqa_           5 SSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASE----DVAALESQPLLGFTVTLVK-DENSESKVFQLLHKGMV   79 (109)
T ss_dssp             CCSCSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTT----CSSCSEEEECSSEEEEECC-CSSCSSSEEEEEETTEE
T ss_pred             CCCCcEEEEEEEECCCCCCceEEEEEEeCCEEEEecccc----ccccccccccceeeeeecc-cccccceeeeeecccce
Confidence            356799999999988888999999999999999999988    6778999999997555443 334789999998875 5


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          103 TMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       103 ~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      .++|+|++++++++||.||+.++...
T Consensus        80 ~~~f~a~s~~~~~~Wi~ai~~a~~~~  105 (109)
T d1wgqa_          80 FYVFKADDAHSTQRWIDAFQEGTVSG  105 (109)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhccC
Confidence            78999999999999999999998654

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4e-23  Score=126.15  Aligned_cols=99  Identities=31%  Similarity=0.592  Sum_probs=86.4

Q ss_pred             ccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc--ccCCCCceEEEEeCCeE
Q 041556           26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE--DLLNKPFAFELSTGEYT  103 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~~f~i~~~~~~  103 (143)
                      .++++|||.|++...+.|++|||+|.++.|+||+++.    ...+.+.|+|..+..+....  ......++|.|.++++.
T Consensus         2 ~vik~G~L~K~~~~~~~Wkkr~fvL~~~~l~yy~~~~----~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~   77 (103)
T d1eaza_           2 AVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSEL----EKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRT   77 (103)
T ss_dssp             CCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTT----CSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSSCE
T ss_pred             ceEEEEEEEEECCCCCCeeEEEEEEECCEEEEEeccc----CcccceEEEccceEEeeccccccccccceEEEEEeCCEE
Confidence            5789999999998888999999999999999999988    67899999999875554432  22456899999999999


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          104 MYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       104 ~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      ++|+|+|++|+++|+.+|+.|+...
T Consensus        78 ~~~~a~s~~e~~~W~~aI~~ai~~~  102 (103)
T d1eaza_          78 FYVQADSPEEMHSWIKAVSGAIVAQ  102 (103)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999998754

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-22  Score=126.67  Aligned_cols=102  Identities=27%  Similarity=0.586  Sum_probs=86.7

Q ss_pred             ccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecC-cccCCCCceEEEEeCC-
Q 041556           24 WSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA-EDLLNKPFAFELSTGE-  101 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~-~~~~~~~~~f~i~~~~-  101 (143)
                      -+.++++|||+|++...+.|++|||+|.++.|+||+++.    ...+.+.++|..+.++... ......+++|+|.+.. 
T Consensus         5 ~s~~~k~G~L~K~~~~~k~WkkR~fvL~~~~l~y~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~l~~~~~   80 (118)
T d1v89a_           5 SSGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEE----DTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASW   80 (118)
T ss_dssp             SSCEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSS----CCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCC
T ss_pred             CCCCeEEEEEEEECCCCCCcEEEEEEEECCEEEEecccC----cccccceeccCceEEEEeccccccCCCcEEEEecCCC
Confidence            366899999999998889999999999999999999988    7889999999998665543 2334668999998653 


Q ss_pred             -------eEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556          102 -------YTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       102 -------~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                             +.|+|+|++++|+++|+.||++|+....
T Consensus        81 ~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a~~~~p  115 (118)
T d1v89a_          81 DQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGP  115 (118)
T ss_dssp             SSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCCS
T ss_pred             cceecCCcEEEEEcCCHHHHHHHHHHHHHHHccCC
Confidence                   5799999999999999999999977543

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.4e-23  Score=132.41  Aligned_cols=98  Identities=13%  Similarity=0.169  Sum_probs=86.5

Q ss_pred             cceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEE
Q 041556           27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYF  106 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~  106 (143)
                      ..++|||.+++...+.|++|||||+++.|+||+++.    +..+.+.|+|.++..+....+..+.+++|.|.++++.++|
T Consensus        11 ~~~eG~L~k~~~~~k~WkkrwfvL~~~~L~yY~~~~----d~~~~~~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~~~~f   86 (136)
T d1x1fa1          11 LYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKK----SIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQL   86 (136)
T ss_dssp             EEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSS----CSSCSEECCCSSCCEEEECCCTTSCCCEEEEECSSCCEEE
T ss_pred             ccEEEEEEEECCCCCCeEEEEEEEcCCEeEEEeecc----cccccccccccceeeeeeecccccccceeeecCCCceEEE
Confidence            358999999999889999999999999999999988    7889999999988666554444467899999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHHHHhh
Q 041556          107 VADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       107 ~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +|+|+++++.|+.+|+.++...
T Consensus        87 ~Aes~~e~~~Wi~~I~~v~~~~  108 (136)
T d1x1fa1          87 KTENTESGEEWRGFILTVTELS  108 (136)
T ss_dssp             ECSSHHHHHHHHHHHHHHHHSS
T ss_pred             EeCCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999998753

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9e-23  Score=124.75  Aligned_cols=96  Identities=25%  Similarity=0.495  Sum_probs=83.9

Q ss_pred             ceEEEEEeeCC-CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEEE
Q 041556           28 ERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYF  106 (143)
Q Consensus        28 ~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~  106 (143)
                      +++|||.|+++ +.+.|++|||+|.++.|+||+++.    +..+.+.|+|.++..+..     .++++|.|.++++.|+|
T Consensus         2 ik~G~L~K~~~~~~~~W~kr~fvL~~~~L~~~~~~~----~~~~~~~i~L~~~~~~~~-----~~~~~f~i~~~~~~~~l   72 (102)
T d2coda1           2 VKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEK----EMYSKGIIPLSAISTVRV-----QGDNKFEVVTTQRTFVF   72 (102)
T ss_dssp             CEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSC----CSSCCCEEETTTEEEEEE-----ETTTEEEEEESSCCEEE
T ss_pred             cEEEEEEEECCCCCCCceEEEEEEECCEEEEEeccC----cceeEEEEEchhceeecc-----ccceeEEEEcCCcEEEE
Confidence            68999999975 457899999999999999999988    788999999999765543     35799999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHHHHhhcCCC
Q 041556          107 VADTEKEKEEWINSIGRAIVQHSRSV  132 (143)
Q Consensus       107 ~a~s~~e~~~Wi~al~~~~~~~~~~~  132 (143)
                      +|+|++|+..|+.||+.++.......
T Consensus        73 ~a~s~~e~~~Wi~ai~~~i~~~~~~~   98 (102)
T d2coda1          73 RVEKEEERNDWISILLNALKSQSLTS   98 (102)
T ss_dssp             ECSSHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             EeCCHHHHHHHHHHHHHHHHhCcCCC
Confidence            99999999999999999987665433

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.4e-23  Score=129.48  Aligned_cols=98  Identities=21%  Similarity=0.444  Sum_probs=79.9

Q ss_pred             cccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC-
Q 041556           23 FWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE-  101 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~-  101 (143)
                      ..+.++++|||.+++ .++.|++|||||.++.|+||+++.    ...+.+.|+|.++.++.....  ..+++|+|..+. 
T Consensus         4 ~~~~~~~~GwLkk~~-~~k~WkkRwfvL~~~~L~yyk~~~----~~~~~g~i~L~~~~v~~~~~~--~~~~~f~i~~~~~   76 (130)
T d1v88a_           4 GSSGIVMADWLKIRG-TLKSWTKLWCVLKPGVLLIYKTQK----NGQWVGTVLLNACEIIERPSK--KDGFCFKLFHPLE   76 (130)
T ss_dssp             SSSSCCEEEEEEECC-SSSSCEEEEEEEETTEEEEESCSS----SCCCCEEEECSSCEECCCCTT--TSSCEEEEECTTC
T ss_pred             CCCCCeEeCeEEeCC-CCCCceEEEEEEeCCEEEEEcCCC----CCcceeEEECCCeEEEEcccc--CCCceEEEEcCCC
Confidence            346789999996654 578899999999999999999988    788999999999865543332  568899886531 


Q ss_pred             -----------------------eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556          102 -----------------------YTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus       102 -----------------------~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                                             +.++|+|+|++|++.||.||++++..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~A~s~~e~~~Wi~al~~~i~~  125 (130)
T d1v88a_          77 QSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKS  125 (130)
T ss_dssp             CCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             cceecccCcccccceeEEecCCcEEEEEECCCHHHHHHHHHHHHHHhhc
Confidence                                   23679999999999999999999864

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.2e-23  Score=126.78  Aligned_cols=95  Identities=22%  Similarity=0.363  Sum_probs=80.4

Q ss_pred             cceEEEEEeeCCC--CCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC----
Q 041556           27 PERSGWLTKQGDY--IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG----  100 (143)
Q Consensus        27 ~~~~G~L~k~~~~--~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~----  100 (143)
                      ++++|||++++..  .+.|++|||||.++.|+||++++    ...+.+.++|.++.+........+++++|.|.++    
T Consensus         3 vik~GwL~k~~~~~~~~~WkkRwFvL~~~~L~yyk~~~----~~~~~~~i~l~~~~v~~~~~~~~~~~~~F~l~~~~~~~   78 (111)
T d2dyna_           3 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDE----EKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRN   78 (111)
T ss_dssp             EEEEEEEEETTCCTTTTSSEEEEEEEESSEEEEESSTT----CCCEEEEEECTTEEEEEECCCSTTCSEEEEEEESSCSC
T ss_pred             EEEEeeEEEECCCCCcCCceEEEEEEECCEEEEEcchh----hcccccccccccceeEeeccccccccccEEeeeccccc
Confidence            5799999998653  46799999999999999999988    7889999999997554444444578999999865    


Q ss_pred             ----CeEEEEEcCCHHHHHHHHHHHHHHH
Q 041556          101 ----EYTMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus       101 ----~~~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                          .+.++|+|+|++|+.+|+.||.+|.
T Consensus        79 ~~~~~r~~~l~a~s~ed~~~W~~al~~A~  107 (111)
T d2dyna_          79 VYKDYRQLELACETQEEVDSWKASFLRAG  107 (111)
T ss_dssp             SBTTBSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             cccCceeEEEECCCHHHHHHHHHHHHHhc
Confidence                3579999999999999999998874

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=4.2e-22  Score=125.74  Aligned_cols=99  Identities=38%  Similarity=0.740  Sum_probs=82.5

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEE------
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELS------   98 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~------   98 (143)
                      .+|.++|||+|++...+.|++|||||.++.|+||+++.    +..+.+.|+|.++.++...+.  .++++|.+.      
T Consensus         3 ~np~keG~L~K~~~~~k~WkrR~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~v~~~~~~--~~~~~~~~~~~~~~~   76 (127)
T d1fgya_           3 FNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT----DKEPRGIIPLENLSIREVLDP--RKPNCFELYNPSHKG   76 (127)
T ss_dssp             SSCSEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTT----CSSCSEEEECTTCEEEEECCS--SCSSEEEEECSSSTT
T ss_pred             CCCceEEEEEEECCCCCCcEEEEEEEECCEEEEEccCC----CccccceEeCCCeEEEEccCC--CCCceEEEecccccc
Confidence            56899999999998889999999999999999999887    788999999999866544432  345555543      


Q ss_pred             ----------------eCCeEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556           99 ----------------TGEYTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus        99 ----------------~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                                      ...+.++|+|+|++|+.+|+.||++++...+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~f~a~s~~e~~~Wi~aL~~~i~~~~  123 (127)
T d1fgya_          77 QVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDP  123 (127)
T ss_dssp             CCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHCT
T ss_pred             ccccccccccceeEeeCCCeEEEEECCCHHHHHHHHHHHHHHHccCC
Confidence                            3456799999999999999999999988653

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.7e-22  Score=125.94  Aligned_cols=101  Identities=22%  Similarity=0.466  Sum_probs=84.7

Q ss_pred             cccccceEEEEEeeCCCCCCeeeEEEEEE--CCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc------CCCCce
Q 041556           23 FWSNPERSGWLTKQGDYIKTWRRRWFILK--QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL------LNKPFA   94 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~~~~~w~~r~~vL~--~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~------~~~~~~   94 (143)
                      ..+.+.++|||+|++...+.|++|||||.  +..|+||+++.    +..+.+.|+|.++..+......      ....++
T Consensus         4 ~~s~~~~eG~L~k~~~~~k~WkkR~fvL~~~~~~L~~~~~~~----~~~p~g~i~l~~~~~v~~~~~~~~~~~~~~~~~~   79 (117)
T d1v5ua_           4 GSSGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRM----DTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAF   79 (117)
T ss_dssp             SCCSSSEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSS----CSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTC
T ss_pred             CCCCCeEEEEEEEECCCCCCceEEEEEEeCCCCEEEeccccc----ccCcceEEEecceEEEeecccccccccccccceE
Confidence            34667999999999988889999999996  46899999988    7889999999998666543221      234578


Q ss_pred             EEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556           95 FELSTGEYTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        95 f~i~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      |.+.++++.|+|+|+|++++++||.+|+.++..
T Consensus        80 ~~~~~~~~~~~~~a~s~~e~~~Wv~~l~~ai~~  112 (117)
T d1v5ua_          80 FDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSS  112 (117)
T ss_dssp             EEEEESSCEEEEECSSHHHHHHHHHHHHTTCCC
T ss_pred             EEeeCCCcEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999988653

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.7e-22  Score=133.08  Aligned_cols=108  Identities=19%  Similarity=0.277  Sum_probs=86.0

Q ss_pred             ccceEEEEEeeCCCC-----CCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc------------
Q 041556           26 NPERSGWLTKQGDYI-----KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL------------   88 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~-----~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~------------   88 (143)
                      .++++|||.|++...     ..|++|||||.++.|+||+++.+......+.+.|.|.++..++.....            
T Consensus         2 ~vi~eG~L~Kr~~~k~k~~~~~WkrRwFVL~~~~L~Yyk~~~~~~~~~~~kG~I~L~~~~~v~~~~~~~~~~~~~~~~~~   81 (169)
T d1btka_           2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRR   81 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---
T ss_pred             cEEEEEEEEEecCCCCCcCcCCceEEEEEEECCEEeeeccccccccccCccceEeccceEEEEeecccCCCCcccccccc
Confidence            578999999997632     369999999999999999887632223457899999997665443211            


Q ss_pred             -------------CCCCceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhcCCCC
Q 041556           89 -------------LNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVT  133 (143)
Q Consensus        89 -------------~~~~~~f~i~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~~~  133 (143)
                                   ....++|+|.+++++|+|+|+|++|+++||.+|+.++........
T Consensus        82 ~~~~~~~~~~~~~~~~~~~F~I~t~~rt~~l~A~s~eE~~~WI~aL~~~i~~~~~~~~  139 (169)
T d1btka_          82 GEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIRYNSDLVQ  139 (169)
T ss_dssp             ------CCTTHHHHCCCEEEEEEETTCCEEEEESCHHHHHHHHHHHHHHHTTCSCCCS
T ss_pred             ccccccccccccccccCcceEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHhCccccc
Confidence                         134689999999999999999999999999999999987765443

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.5e-22  Score=127.54  Aligned_cols=98  Identities=24%  Similarity=0.506  Sum_probs=73.0

Q ss_pred             ceEEEEEee----------CCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEE
Q 041556           28 ERSGWLTKQ----------GDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFEL   97 (143)
Q Consensus        28 ~~~G~L~k~----------~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i   97 (143)
                      .++|||+++          +...+.|++|||||.++.|+||+++........+.+.|+|.+|.+ ....+...++|+|.|
T Consensus         2 ~KeG~L~~k~~~~~~~kk~~~~~k~Wkkr~fvL~~~~L~~y~~~~~~~~~~~~~~~i~L~~~~v-~~~~~~~~r~~~F~i   80 (133)
T d2j59m1           2 AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLI-DISYSETKRKNVFRL   80 (133)
T ss_dssp             CEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEE-EECSSSCSCSSEEEE
T ss_pred             CceEEEEeeccccccccccCCCCCCceEEEEEEeCCEEEEEeccccccccccccccceecceEE-EEcccccccCceeEE
Confidence            589999843          334568999999999999999998764333456788999999854 344444578999999


Q ss_pred             EeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           98 STGEYTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        98 ~~~~~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      .++++.|+|+|+|++|++.||.+|+.++.
T Consensus        81 ~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~  109 (133)
T d2j59m1          81 TTSDCECLFQAEDRDDMLAWIKTIQESSN  109 (133)
T ss_dssp             ECSSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             ecCCCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998754

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.8e-21  Score=120.28  Aligned_cols=98  Identities=17%  Similarity=0.378  Sum_probs=81.9

Q ss_pred             ccccceEEEEEeeCC----CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc--ccCCCCceEEE
Q 041556           24 WSNPERSGWLTKQGD----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE--DLLNKPFAFEL   97 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~----~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~~f~i   97 (143)
                      .+.++++|||++++.    ..+.|++|||||.++.|+||+++.    ...+.+.++|.++..+....  ....++++|.|
T Consensus         6 ~~~v~k~G~L~k~~~~~~~~~~~W~~r~~vL~~~~L~~y~~~~----~~~p~g~i~L~~~~~~~~~~~~~~~~~~~~f~i   81 (111)
T d1u5fa1           6 LPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDK----DKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEI   81 (111)
T ss_dssp             CSSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTT----CSSCSEEEECTTCEEEECTTSCSSTTGGGEEEE
T ss_pred             CCCeeEEEEEEEECCCCCCCcCCceEEEEEEECCEEEeecccc----ccCcceEEEecccEEEeeccccccccccceEEE
Confidence            466799999999864    246899999999999999999988    78899999999976554332  23456799999


Q ss_pred             EeC-CeEEEEEcCCHHHHHHHHHHHHHHH
Q 041556           98 STG-EYTMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus        98 ~~~-~~~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      .++ ++.|+|+|+|++|+++|+.||+.++
T Consensus        82 ~~~~~~~~~~~a~s~~e~~~W~~ai~~~i  110 (111)
T d1u5fa1          82 CAPDKRIYQFTAASPKDAEEWVQQLKFIL  110 (111)
T ss_dssp             ECTTSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             EccCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            886 5799999999999999999998874

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.2e-22  Score=119.21  Aligned_cols=93  Identities=17%  Similarity=0.316  Sum_probs=79.3

Q ss_pred             ceEEEEEeeCCCCCCeeeEEEEEECC---eEEEEccCCCCCCCCCccEEEeCCCeEEeecCc-ccCCCCceEEEEeCCeE
Q 041556           28 ERSGWLTKQGDYIKTWRRRWFILKQG---KLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE-DLLNKPFAFELSTGEYT  103 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~---~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~-~~~~~~~~f~i~~~~~~  103 (143)
                      +++|||.++.. .+.|++|||||+++   .|+||++++    +..+.+.|+|.++.++.... ....++++|.|.++++.
T Consensus         2 ~~~G~L~~~~~-~k~W~krwfvL~~~~~~~ly~~~~~~----~~~~~~~i~l~~~~~~~~~~~~~~~~~~~F~i~~~~r~   76 (99)
T d2coca1           2 LLCGPLRLSES-GETWSEVWAAIPMSDPQVLHLQGGSQ----DGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQS   76 (99)
T ss_dssp             SSEEEEEEESS-SSCEEEEEEECCTTCTTCEEEECCTT----CSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEETTEE
T ss_pred             ceEEEEEccCC-CCCccEEEEEEecCCccEEEEECcCc----cccccccccccceeeeecccccccCCceEEEEEcCCcE
Confidence            57899999875 46899999999876   588999888    78899999999986554332 23467899999999999


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHH
Q 041556          104 MYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus       104 ~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      |+|+|+|++|+++|+.||++|+
T Consensus        77 ~~l~A~s~~e~~~Wi~aL~~Aa   98 (99)
T d2coca1          77 WYLSASSAELQQQWLETLSTAA   98 (99)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999886

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.6e-21  Score=117.48  Aligned_cols=96  Identities=28%  Similarity=0.537  Sum_probs=80.9

Q ss_pred             ccceEEEEEeeCC-CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecC-cccCCCCceEEEEeC-Ce
Q 041556           26 NPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA-EDLLNKPFAFELSTG-EY  102 (143)
Q Consensus        26 ~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~-~~~~~~~~~f~i~~~-~~  102 (143)
                      .++++|||+|++. ..+.|++|||+|.++.|+||.++.    ...+.+.++|.++.++... ....+.+++|.+.+. .+
T Consensus         8 ~~~~~G~L~k~~~~~~k~W~kr~~vL~~~~L~~y~~~~----~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~i~~~~~~   83 (107)
T d1upqa_           8 PVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSR----EESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMR   83 (107)
T ss_dssp             CEEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTT----CCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSC
T ss_pred             ceeEEEEEEEeCCCCCCCeeEEEEEEECCEEEEecCcc----cccccceecccceEEEEeccCcccCcceEEEEEcCCCe
Confidence            4589999999865 467899999999999999999988    7789999999998665443 233456789999876 57


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHH
Q 041556          103 TMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus       103 ~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      .++|+|+|++|+.+|+.||+.|.
T Consensus        84 ~~~~~a~s~~e~~~Wi~al~~A~  106 (107)
T d1upqa_          84 TYVLAADTLEDLRGWLRALGRAS  106 (107)
T ss_dssp             CEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHHHh
Confidence            89999999999999999999875

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-21  Score=119.89  Aligned_cols=98  Identities=19%  Similarity=0.488  Sum_probs=80.9

Q ss_pred             cceEEEEEeeCC----CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc--ccCCCCceEEEEeC
Q 041556           27 PERSGWLTKQGD----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE--DLLNKPFAFELSTG  100 (143)
Q Consensus        27 ~~~~G~L~k~~~----~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~~f~i~~~  100 (143)
                      ++++|||+|++.    ..+.|++|||+|.++.|+||+++.    +..+.+.|+|.++.......  ....++++|.|.+.
T Consensus         1 vik~G~L~k~~~~~~~~~~~Wkkr~~vL~~~~L~y~~~~~----~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~   76 (106)
T d1u5da1           1 VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEK----SKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQ   76 (106)
T ss_dssp             EEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTT----CSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECS
T ss_pred             CeEEEEEEEECCCCCCCcCCcEEEEEEEECCEEEEEeccc----ccccccccccCCceEeeccccccccCCceeEEEEcC
Confidence            478999998754    235799999999999999999988    67899999999975543322  22356799999886


Q ss_pred             -CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          101 -EYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       101 -~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                       ++.++|+|+|++++++|+.||+.++...
T Consensus        77 ~~~~~~f~a~s~~e~~~W~~ai~~~i~~l  105 (106)
T d1u5da1          77 DRRTYEFTATSPAEARDWVDQISFLLKDL  105 (106)
T ss_dssp             SSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCHHHHHHHHHHHHHHHHHc
Confidence             4789999999999999999999998754

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.8e-21  Score=122.90  Aligned_cols=109  Identities=22%  Similarity=0.321  Sum_probs=81.9

Q ss_pred             cccccceEEEEEeeCC-CCCCeeeEEEEEECCe--EEEEccCCCCCCCCCccEEEeCCCeEEeecC--cccCCCCceEEE
Q 041556           23 FWSNPERSGWLTKQGD-YIKTWRRRWFILKQGK--LFWFKDSHNITPGSTPRGVIPVGTCLTVRGA--EDLLNKPFAFEL   97 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~--l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~--~~~~~~~~~f~i   97 (143)
                      ..+.+.++|||+|++. ..+.|++|||||.++.  ++||.+..+  ....+.+.|.+..+..+...  +....+.+.|.|
T Consensus         4 ~~~~~~~~G~L~K~g~~~~k~WkkRwfvL~~~~~~~yy~~~~~~--~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i   81 (126)
T d1wi1a_           4 GSSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYRE--KKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNA   81 (126)
T ss_dssp             CCCCEEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCS--SSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEE
T ss_pred             CCCCCcEEEEEEEECCCCCCCceEEEEEEeCCceEEEEEccccc--ccccceeeeeeceeeeeeccccccccccceeEEe
Confidence            3456789999999986 4689999999998654  444444432  24568899999987554332  222345678888


Q ss_pred             EeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhcCCCC
Q 041556           98 STGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVT  133 (143)
Q Consensus        98 ~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~~~  133 (143)
                      .++++.|+|+|+|++|+.+||.||++|+........
T Consensus        82 ~~~~r~~~f~A~s~~e~~~Wv~al~~a~~~~~~~~~  117 (126)
T d1wi1a_          82 VKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVP  117 (126)
T ss_dssp             ECSSCEEEEECSSHHHHHHHHHHHHHHHTCSSCCCC
T ss_pred             ccCCeEEEEEECCHHHHHHHHHHHHHHHHhhcCCCC
Confidence            899999999999999999999999999876654443

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.8e-20  Score=121.72  Aligned_cols=99  Identities=30%  Similarity=0.577  Sum_probs=80.4

Q ss_pred             cccceEEEEEeeCCC------CCCeeeEEEEEECC-----eEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCc
Q 041556           25 SNPERSGWLTKQGDY------IKTWRRRWFILKQG-----KLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPF   93 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~------~~~w~~r~~vL~~~-----~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~   93 (143)
                      .+++++|||+|++..      .+.|++|||||.+.     .|.||++...   ...+.+.|.|..|.++.....  .+++
T Consensus        16 ~~v~k~G~L~K~~~~~~~~~~~k~WkkR~fvL~~~~~~~~~L~yy~~~~~---~~~~~g~i~l~~~~~~~~~~~--~~~~   90 (150)
T d1wg7a_          16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKI---SKEPKGSIFLDSCMGVVQNNK--VRRF   90 (150)
T ss_dssp             CCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCC---SSCCSEEECTTTCCEECCCCS--SCTT
T ss_pred             CCEeEEEEEEEecCCCCcccccccceEEEEEEEcCcCCceeEEEEecccc---ccccccccccccccccccCcc--ccce
Confidence            567899999998642      35899999999854     5788876652   567899999999866644443  6789


Q ss_pred             eEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           94 AFELSTG-EYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        94 ~f~i~~~-~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      +|.|..+ .+.|+|+|++++|++.||.||++++...
T Consensus        91 ~F~i~~~~~~~~~l~A~s~~e~~~Wi~aL~~~i~~~  126 (150)
T d1wg7a_          91 AFELKMQDKSSYLLAADSEVEMEEWITILNKILQLN  126 (150)
T ss_dssp             EEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCeEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence            9999876 5789999999999999999999997654

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=9.6e-21  Score=129.14  Aligned_cols=101  Identities=17%  Similarity=0.358  Sum_probs=84.5

Q ss_pred             ccccceEEEEEeeCC----CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCc--ccCCCCceEEE
Q 041556           24 WSNPERSGWLTKQGD----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE--DLLNKPFAFEL   97 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~----~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~~f~i   97 (143)
                      ...++++|||+|++.    ..+.|++|||||.++.|+||++..    +..+.+.|+|.++.++....  ...+++++|.|
T Consensus       101 ~~~~~k~G~L~K~~~~~~~~~~~Wkkr~fvL~~~~L~yy~~~~----~~~~~~~i~L~~~~~~~~~~~~~~~~~~~~F~i  176 (209)
T d1u5ea1         101 LPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDK----DKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEI  176 (209)
T ss_dssp             CSSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTT----CSSCSEEEECTTCEEEECGGGCSSTTGGGEEEE
T ss_pred             cCCeeEEEEEEEecCCCCCccccceEEEEEEECCEEEEEecCC----CCccceEEEecceeeeeccccccccCCCcEEEE
Confidence            345689999999863    357899999999999999999988    77899999999986654432  22356899999


Q ss_pred             EeC-CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           98 STG-EYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        98 ~~~-~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      .++ ++.|+|+|+|++++..|+.||+.++...
T Consensus       177 ~~~~~r~~~f~a~s~~e~~~Wi~al~~~i~~~  208 (209)
T d1u5ea1         177 CAPDKRIYQFTAASPKDAEEWVQQLKFILQDL  208 (209)
T ss_dssp             ECSSSCEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred             EcCCCCEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence            886 5899999999999999999999998753

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.6e-21  Score=125.31  Aligned_cols=97  Identities=21%  Similarity=0.283  Sum_probs=82.4

Q ss_pred             ccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEE
Q 041556           26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMY  105 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~  105 (143)
                      .++++|||+|+++.  .|++|||||+++.|+||+++.    ...+.|.|+|..+..++.     ..+++|.|.+++++|+
T Consensus        47 ~ilK~G~L~Kr~~~--~wkkR~FvL~~~~L~YYkd~~----~~~~kG~I~L~~~~~v~~-----~~~~~F~I~t~~Rty~  115 (147)
T d1w1ha_          47 LILKMGPVDKRKGL--FARRRQLLLTEGPHLYYVDPV----NKVLKGEIPWSQELRPEA-----KNFKTFFVHTPNRTYY  115 (147)
T ss_dssp             CEEEEEEEEECCTT--SCEEEEEEEETTTEEEEEETT----TTEEEEEECCCTTCEEEE-----EETTEEEEECSSCEEE
T ss_pred             eEEEEEEEEeecCC--cceEEEEEEcCCeeEEEeCCC----cccccceEEecccccccc-----ccCceEEEecCceEEE
Confidence            46899999998764  699999999999999999988    678999999998765543     3478999999999999


Q ss_pred             EEcCCHHHHHHHHHHHHHHHHhhcCCCCc
Q 041556          106 FVADTEKEKEEWINSIGRAIVQHSRSVTE  134 (143)
Q Consensus       106 ~~a~s~~e~~~Wi~al~~~~~~~~~~~~~  134 (143)
                      |+|++ .++.+|+.||+.++.......++
T Consensus       116 l~a~~-~d~~~Wv~aI~~v~~~~~~~~~~  143 (147)
T d1w1ha_         116 LMDPS-GNAHKWCRKIQEVWRQRYQSHPD  143 (147)
T ss_dssp             EECTT-SCHHHHHHHHHHHHHHHHCSSTT
T ss_pred             EEcCh-HHHHHHHHHHHHHHHHHhhhCcc
Confidence            99866 68999999999998877655444

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.8e-21  Score=116.58  Aligned_cols=94  Identities=22%  Similarity=0.523  Sum_probs=75.9

Q ss_pred             ccceEEEEEeeCCCCCCeeeEEEEEECC-------eEEEEccCCC-CCCCCCccEEEeCCCeEEeecCcccCCCCceEEE
Q 041556           26 NPERSGWLTKQGDYIKTWRRRWFILKQG-------KLFWFKDSHN-ITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFEL   97 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~-------~l~~y~~~~~-~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i   97 (143)
                      ++.++|||.|+    +.|++|||||.+.       .|.||+++.+ ......+.+.|+|..|..+..... ...+++|+|
T Consensus         1 dv~k~GyL~K~----k~WkkR~fvL~~~~~~~~~~~L~yy~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~-~~~~~~f~i   75 (103)
T d1qqga1           1 DVRKVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRAD-SKNKHLVAL   75 (103)
T ss_dssp             CEEEEEEEECT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECC-SSCSSEEEE
T ss_pred             CcceeEEEEEc----CCCCEEEEEEecccccCCccEEEEEcchhhhhcccccccceEecceeeEEeeccc-CCCceEEEE
Confidence            46899999886    4799999999864       5899987542 112466889999999866544432 367899999


Q ss_pred             EeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 041556           98 STGEYTMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus        98 ~~~~~~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                      .++++.|+|+|+|++|+..|+.||+..
T Consensus        76 ~t~~r~~~l~A~s~~e~~~Wi~al~~l  102 (103)
T d1qqga1          76 YTRDEHFAIAADSEAEQDSWYQALLQL  102 (103)
T ss_dssp             EESSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             EeCCeEEEEEcCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999763

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=2.6e-20  Score=116.56  Aligned_cols=97  Identities=18%  Similarity=0.387  Sum_probs=76.2

Q ss_pred             cccceEEEEEeeCCC-CCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC-Ce
Q 041556           25 SNPERSGWLTKQGDY-IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG-EY  102 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~-~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~-~~  102 (143)
                      .+++++|||.|+++. .+.|++|||||.++.|+||+++.      .+.+.|.|..+..+.....  ..+++|.|.+. ++
T Consensus         8 ~~~i~eG~L~K~g~~~~~~WkkR~fvL~~~~L~yy~~~~------~~~~~i~l~~~~~v~~~~~--~~~~~f~i~~~~~~   79 (119)
T d1omwa2           8 KDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGE------APQSLLTMEEIQSVEETQI--KERKCLLLKIRGGK   79 (119)
T ss_dssp             SCCCEEEEEEECC------CEEEEEEEETTEEEEECTTS------CCCEEEEGGGEEEEEEEES--SSCEEEEEEETTSC
T ss_pred             CCeEEEEEEEEECCCCCCCeEEEEEEEEcCeEEEEeccc------ccCccceeccccccccccc--cccceEEEEcCCCc
Confidence            457999999999864 56799999999999999998765      3567888887766654433  56778888765 68


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556          103 TMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       103 ~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      .|+|+|+|++++..|+.||+.|+....
T Consensus        80 ~~~f~a~s~~e~~~W~~al~~a~~~~~  106 (119)
T d1omwa2          80 QFVLQCDSDPELVQWKKELRDAYREAQ  106 (119)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999877653

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.8e-20  Score=111.84  Aligned_cols=95  Identities=31%  Similarity=0.520  Sum_probs=74.7

Q ss_pred             cceEEEEEeeCCCCCCeeeEEEEEECCe--EEEEccCCCCCCCCCccEEEeCCCeEEeecCcc----cCCCCceEEEEeC
Q 041556           27 PERSGWLTKQGDYIKTWRRRWFILKQGK--LFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED----LLNKPFAFELSTG  100 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~--l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~----~~~~~~~f~i~~~  100 (143)
                      ++++|||+++++..+.|++|||+|.++.  +++|+++.    ...+.+.+.+.++.++.....    .....++|.|.++
T Consensus         2 v~k~G~L~k~~~~~k~WkkR~fvL~~~~~~l~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (104)
T d2i5fa1           2 IIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAG----AEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITA   77 (104)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTS----CSSCSEEEECTTCEEEEECC--------CCSEEEEECT
T ss_pred             EEEEEEEEEECCCCCCcEEEEEEEECCeeEEEEEcCcc----ccCccceEeecceEEEEeccCcccccccCccEEEEECC
Confidence            4789999999988889999999999764  44455554    677899999999866544322    2345789998866


Q ss_pred             -CeEEEEEcCCHHHHHHHHHHHHHHH
Q 041556          101 -EYTMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus       101 -~~~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                       ++.++|+|+|++|+.+|+.||+.|+
T Consensus        78 ~~~~~~~~a~s~~e~~~W~~ai~~a~  103 (104)
T d2i5fa1          78 DEVHYFLQAATPKERTEWIKAIQMAS  103 (104)
T ss_dssp             TCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence             5779999999999999999999886

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.1e-20  Score=118.92  Aligned_cols=112  Identities=17%  Similarity=0.281  Sum_probs=85.3

Q ss_pred             CCCCCCccccccccceEEEEEee--------CCCCCCeeeEEEEEECC------eEEEEccCCCCCCCCCccEEEeCCCe
Q 041556           14 NPEDYTGIEFWSNPERSGWLTKQ--------GDYIKTWRRRWFILKQG------KLFWFKDSHNITPGSTPRGVIPVGTC   79 (143)
Q Consensus        14 ~~~~~~~~~~~~~~~~~G~L~k~--------~~~~~~w~~r~~vL~~~------~l~~y~~~~~~~~~~~~~~~i~L~~~   79 (143)
                      .+.+........++.++|||.++        +.+.+.|++|||||.++      .|.||+++.    ...+.+.|.|..+
T Consensus         5 ~~~~~~~~~~~~~v~keG~L~~~~~~~~~~~~~~~~~WkkrwfvL~~~~~~~~~~L~yy~~~~----~~k~~g~i~l~~~   80 (136)
T d1v5ma_           5 SSGNLAAKVELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPK----ASRPKVSIPLSAI   80 (136)
T ss_dssp             CCCCCCCCCCSCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTT----SSSCSSCEETTTC
T ss_pred             CCCccccccccceeeEEEEEEeeccccccCCCCCCCCceEEEEEEeCCcccchhhhhhhCccc----ccCcCcceecccc
Confidence            33434344446788999999753        22457899999999876      588999988    7889999999875


Q ss_pred             EEeec--CcccCCCCceEEEEeCCe-EEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556           80 LTVRG--AEDLLNKPFAFELSTGEY-TMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus        80 ~~~~~--~~~~~~~~~~f~i~~~~~-~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                      ..+..  ..+...++|+|.|.++++ .|+|+|+|++|+++||.+|+.++....
T Consensus        81 ~~~~~~~~~~~~~~~~~F~l~t~~~~~y~f~A~s~~e~~~Wv~ai~~ai~~~~  133 (136)
T d1v5ma_          81 IEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDSGP  133 (136)
T ss_dssp             CBCCCCCCSSSCCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHHHSC
T ss_pred             eeeeeeccccCCCCCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence            33322  223346789999988864 689999999999999999999987553

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.3e-21  Score=118.22  Aligned_cols=92  Identities=17%  Similarity=0.432  Sum_probs=69.0

Q ss_pred             ccceEEEEEeeCC---CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC--
Q 041556           26 NPERSGWLTKQGD---YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG--  100 (143)
Q Consensus        26 ~~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~--  100 (143)
                      -+.++|||+++..   ..+.|++|||||.++.|+||+...     ..+.+.++|.+|.+ ...++ ..++++|.|.++  
T Consensus         4 ~~~k~G~L~k~~~~g~~~k~W~kRwfvL~~~~L~y~~~~~-----~~~~~~i~l~~~~v-~~~~~-~~~~~~f~i~~~~~   76 (101)
T d2elba2           4 LTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGD-----VAGGLAMDIDNCSV-MAVDC-EDRRYCFQITSFDG   76 (101)
T ss_dssp             CSCCEEEEEECSCCC----CCCEEEEEEETTEEEEECTTC-----CCE----EEEECCC-CCCCC-CCSSSSSEECCCSS
T ss_pred             CccEeEEEEEeccCCCCccccEEEEEEEeCCEEEEEccCC-----cccceEEEeccccc-ccccc-cCCcceEEEEeecc
Confidence            3578999999742   357899999999999999988765     56778888888743 33333 367899999875  


Q ss_pred             CeEEEEEcCCHHHHHHHHHHHHHH
Q 041556          101 EYTMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus       101 ~~~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                      .+.++|+|+|++|+.+||.||+.+
T Consensus        77 ~~~~~l~A~s~~e~~~Wi~al~~v  100 (101)
T d2elba2          77 KKSSILQAESKKDHEEWICTINNI  100 (101)
T ss_dssp             SCCCCEECSSHHHHHHHHHHHHHT
T ss_pred             cceEEEECCCHHHHHHHHHHHHhc
Confidence            478999999999999999999865

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.1e-20  Score=112.61  Aligned_cols=91  Identities=16%  Similarity=0.397  Sum_probs=74.7

Q ss_pred             ceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC-CeEEEE
Q 041556           28 ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG-EYTMYF  106 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~-~~~~~~  106 (143)
                      .++|||.+.+.  +.|++|||+|+++.|+||+++..   ...+.+.++|.++.++. .++ ..++++|.+.++ ++.|+|
T Consensus         2 ~~s~yl~~~~~--~~WkkR~fvL~~~~L~yyk~~~~---~~~~~~~i~l~~~~v~~-~~~-~~~~~~f~~~~~~~~~~~l   74 (95)
T d2cofa1           2 ETSSYLNVLVN--SQWKSRWCSVRDNHLHFYQDRNR---SKVAQQPLSLVGCEVVP-DPS-PDHLYSFRILHKGEELAKL   74 (95)
T ss_dssp             TTCCEEEEEET--TEEEEEEEEECSSCEEEECSSTT---CSEEEEEECTTTCEEEC-CCB-TTBSCEEEEEETTEEEEEE
T ss_pred             CcccchhhhcC--CCceEEEEEEECCEEEEEecccc---cccccccccccceEEEe-ccc-ccceecceeccccceeEEe
Confidence            36899999875  47999999999999999998762   44578899999986543 332 367889998766 578999


Q ss_pred             EcCCHHHHHHHHHHHHHHH
Q 041556          107 VADTEKEKEEWINSIGRAI  125 (143)
Q Consensus       107 ~a~s~~e~~~Wi~al~~~~  125 (143)
                      +|+|++|+++||.+|+.+.
T Consensus        75 ~A~s~~e~~~Wi~~L~~~t   93 (95)
T d2cofa1          75 EAKSSEEMGHWLGLLLSES   93 (95)
T ss_dssp             ECSSHHHHHHHHHHHHHHS
T ss_pred             eCCCHHHHHHHHHHHHHHh
Confidence            9999999999999998763

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.4e-20  Score=114.99  Aligned_cols=101  Identities=25%  Similarity=0.456  Sum_probs=76.1

Q ss_pred             cccccccceEEEEEeeCCCCCCeeeEEEEEECCe--EEEEccCCCCCCCCCccEEEeCCCeEEeecCc-------ccCCC
Q 041556           21 IEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGK--LFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE-------DLLNK   91 (143)
Q Consensus        21 ~~~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~--l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~-------~~~~~   91 (143)
                      ++...+++++|||+|++...+.|++|||+|.+..  ++||....   ....|.+.|+|.++.+.....       .....
T Consensus         5 ~~~~~~v~k~G~L~K~~~~~k~WkkR~fvL~~~~~~~~~~~~~~---~~~~p~~~i~L~~~~i~~~~~~~~~~~~~~~~~   81 (116)
T d1x1ga1           5 VELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSK---EENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQ   81 (116)
T ss_dssp             CTTCSEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSSS---CCSSCSCCEESTTCCCEECCSSSSCSSCSSCCC
T ss_pred             ccCCCCEEEEEEEEEEcCCCCCCceEEEEEECCCcEEEEecccc---ccccceeEEEcCCCEEEEecccCcccccccccc
Confidence            3444678999999999988899999999998654  33443332   146789999999875433221       11344


Q ss_pred             CceEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHH
Q 041556           92 PFAFELSTG-EYTMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus        92 ~~~f~i~~~-~~~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                      .++|.|.++ .+.|+|+|++++|+++|+.||+++
T Consensus        82 ~~~f~i~~~~~~~~~f~a~s~ee~~~Wi~ai~~~  115 (116)
T d1x1ga1          82 GNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL  115 (116)
T ss_dssp             SSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             cceeEEEeCCCeEEEEECCCHHHHHHHHHHHHhh
Confidence            688999876 467999999999999999999876

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.8e-19  Score=113.60  Aligned_cols=101  Identities=21%  Similarity=0.434  Sum_probs=76.3

Q ss_pred             ccceEEEEEeeC-CCCCCeeeEEEEEE--CCeEEEEccCCCC-CCCCCccEEEeCCCeEEeecCc--ccCCCCceEEEEe
Q 041556           26 NPERSGWLTKQG-DYIKTWRRRWFILK--QGKLFWFKDSHNI-TPGSTPRGVIPVGTCLTVRGAE--DLLNKPFAFELST   99 (143)
Q Consensus        26 ~~~~~G~L~k~~-~~~~~w~~r~~vL~--~~~l~~y~~~~~~-~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~~f~i~~   99 (143)
                      +..++|||.+++ ...+.|++|||||.  ++.|+||++..+. .....+.+.|.+..+..+....  ......++|.+.+
T Consensus        14 ~~~~~GyL~k~~~~~~k~WkrRwFvL~~~~~~L~yy~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (126)
T d1v5pa_          14 QNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINA   93 (126)
T ss_dssp             CCCEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEEC
T ss_pred             CCceeeeEEEECCCCCCCeeEEEEEEEcCCCeEEEeeccccccccceeecccceeeeeeccccccccccccccceEEEcC
Confidence            446899999986 45678999999995  6789999987632 1233455677777654433322  2234568999999


Q ss_pred             CCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556          100 GEYTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       100 ~~~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      +.+.|+|+|+|++|+++||.||+.|+.
T Consensus        94 ~~r~~~l~Aes~~e~~~Wi~aL~~A~~  120 (126)
T d1v5pa_          94 LSQRYFLQANDQKDLKDWVEALNQASK  120 (126)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred             CCeeEEEECCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999988753

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.1e-20  Score=116.37  Aligned_cols=101  Identities=27%  Similarity=0.499  Sum_probs=76.4

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEEC-CeEEEEccCCCCCCCCCccEEEeCCCeEEeec--CcccCCCCceEEEEeC-
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG--AEDLLNKPFAFELSTG-  100 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~-~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~--~~~~~~~~~~f~i~~~-  100 (143)
                      .+++++|||+|++...+.|++|||||.+ +.++||.+..    ...+.+.++|..+.....  .....+++++|.|... 
T Consensus         5 ~~v~k~G~L~K~~~~~k~Wk~RwfvL~~~~~l~~~~~~~----~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~   80 (118)
T d1unqa_           5 VAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERP----QDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQ   80 (118)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEETTSEEEEESSCC----CSHHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEE
T ss_pred             CCEEEEEEEEEECCCCCCcEEEEEEEeccceeEEEeecc----CccccccccccceEEeecccccccccCCceEEEEecc
Confidence            3578999999999888999999999985 5788888776    455666666655432211  1112357899999753 


Q ss_pred             ---CeEEEEEcCCHHHHHHHHHHHHHHHHhhc
Q 041556          101 ---EYTMYFVADTEKEKEEWINSIGRAIVQHS  129 (143)
Q Consensus       101 ---~~~~~~~a~s~~e~~~Wi~al~~~~~~~~  129 (143)
                         ...++|+|+|++|++.|+.||+.++....
T Consensus        81 ~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~~~~  112 (118)
T d1unqa_          81 WTTVIERTFHVETPEEREEWTTAIQTVADGLK  112 (118)
T ss_dssp             TTEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence               25689999999999999999999987654

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=99.81  E-value=3.9e-19  Score=111.47  Aligned_cols=103  Identities=19%  Similarity=0.337  Sum_probs=77.5

Q ss_pred             cccceEEEEEeeCC--------CCCCeeeEEEEEECCeEEEEccCCCC--CCCCCccEEEeCCCeEEeecCcccCCCCce
Q 041556           25 SNPERSGWLTKQGD--------YIKTWRRRWFILKQGKLFWFKDSHNI--TPGSTPRGVIPVGTCLTVRGAEDLLNKPFA   94 (143)
Q Consensus        25 ~~~~~~G~L~k~~~--------~~~~w~~r~~vL~~~~l~~y~~~~~~--~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~   94 (143)
                      +.+.++|||.++..        ..+.|++|||||+++.|+||+++...  .....+...+.+..+... ...+...++++
T Consensus         6 ~g~~~eG~L~rk~~~~~~~kr~~~k~Wkkrw~vL~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   84 (123)
T d1wjma_           6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGS-VAFDYRKRKHV   84 (123)
T ss_dssp             CCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEE-ECTTCSSCSSE
T ss_pred             CCCeeEEEEEEEeeccccCcccCCCCCcEEEEEEECCEEEEEecchhccccccccccccccccceeEE-ecccccccCcE
Confidence            55789999998632        34689999999999999999875421  112223456667776433 34444468899


Q ss_pred             EEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           95 FELSTG-EYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        95 f~i~~~-~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      |.|.+. .+.|+|+|+|+++++.||.||+.++...
T Consensus        85 f~i~~~~~~~~~l~a~s~~e~~~Wi~aI~~a~~~~  119 (123)
T d1wjma_          85 FKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASG  119 (123)
T ss_dssp             EEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence            999876 5789999999999999999999998865

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=99.80  E-value=2.4e-19  Score=109.66  Aligned_cols=95  Identities=18%  Similarity=0.360  Sum_probs=74.0

Q ss_pred             eEEEEEeeC--------CCCCCeeeEEEEEECCeEEEEccCCCC--CCCCCccEEEeCCCeEEeecCcccCCCCceEEEE
Q 041556           29 RSGWLTKQG--------DYIKTWRRRWFILKQGKLFWFKDSHNI--TPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELS   98 (143)
Q Consensus        29 ~~G~L~k~~--------~~~~~w~~r~~vL~~~~l~~y~~~~~~--~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~   98 (143)
                      +||||+++.        ...+.|++|||+|.++.|+||+++.+.  .....+.+.++|.+|.+. ...+...++++|.|.
T Consensus         1 ~eG~L~rk~~~~~~~kk~~~~~Wk~r~~vL~~~~L~~yk~~~~~~~~~~~~~~~~i~l~~~~~~-~~~~~~~~~~~f~i~   79 (106)
T d1btna_           1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICE-VALDYKKKKHVFKLR   79 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEE-ECSSCCSSSSEEEEE
T ss_pred             CeeeEEEeeEccCCCcccCCCCCcEEEEEEECCEEEEEeChhhcccccccCcceeEEeccceee-eccccccCcceEeec
Confidence            589999863        133579999999999999999986531  113446678999988544 344444778999999


Q ss_pred             eC-CeEEEEEcCCHHHHHHHHHHHHHH
Q 041556           99 TG-EYTMYFVADTEKEKEEWINSIGRA  124 (143)
Q Consensus        99 ~~-~~~~~~~a~s~~e~~~Wi~al~~~  124 (143)
                      +. ++.++|+|+|++++.+|+.||+.|
T Consensus        80 ~~~~~~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          80 LSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             CTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            86 578999999999999999999864

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=5.6e-18  Score=106.01  Aligned_cols=101  Identities=14%  Similarity=0.293  Sum_probs=74.4

Q ss_pred             ccceEEEEEeeCC--------CCCCeeeEEEEEECCeEEEEccCCCCC----CCCCccEEEeCCCeEEeecCcccCCCCc
Q 041556           26 NPERSGWLTKQGD--------YIKTWRRRWFILKQGKLFWFKDSHNIT----PGSTPRGVIPVGTCLTVRGAEDLLNKPF   93 (143)
Q Consensus        26 ~~~~~G~L~k~~~--------~~~~w~~r~~vL~~~~l~~y~~~~~~~----~~~~~~~~i~L~~~~~~~~~~~~~~~~~   93 (143)
                      ...++|||+++..        ..+.|++|||||.++.|+||+++.+..    ....+...+.+.++.+. ...+...+++
T Consensus         7 ~~~~eG~L~rk~~~~~~~kk~~~~~W~kr~~vL~~~~L~yy~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~   85 (122)
T d1droa_           7 GEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIE-IASDYTKKKH   85 (122)
T ss_dssp             SSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCE-ECCSSSSSTT
T ss_pred             CcceEEEEEEeecccccCcccCCCCceEEEEEEeCCEEEEEcCcccccccCcccccccceEeccceEEE-eccccccccc
Confidence            4578999998742        234799999999999999999876310    11223445666665433 3333346789


Q ss_pred             eEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556           94 AFELSTGE-YTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        94 ~f~i~~~~-~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      +|.|.+.+ +.|+|+|+|++|++.|+.||+.++..
T Consensus        86 ~~~l~~~~~~~~~f~a~s~~d~~~Wv~al~~~~~~  120 (122)
T d1droa_          86 VLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS  120 (122)
T ss_dssp             EEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            99998875 78999999999999999999988753

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1.4e-13  Score=87.02  Aligned_cols=106  Identities=16%  Similarity=0.248  Sum_probs=82.3

Q ss_pred             cccccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC
Q 041556           21 IEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG  100 (143)
Q Consensus        21 ~~~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~  100 (143)
                      ...+..+++.|++.++....+.|+.|||+|.+..|.|++.... ...-...+.|+|.++.+. ..++....++.|.|..+
T Consensus        22 l~~~G~li~~g~~~~~~~~~~~~k~R~~fLF~~~Ll~~k~~~~-~~~~~~k~~i~l~~~~v~-~~~~~~~~~~~f~i~~~   99 (132)
T d1v61a_          22 IKTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPR-MSGFMYQGKIPIAGMVVN-RLDEIEGSDCMFEITGS   99 (132)
T ss_dssp             STTTCCCSCEEEEEBCCSSSSCCCEEEEEECSSCEEEEECSSS-SSCCEEEEEECTTTCBCS-TTCSSSSSCCCEEEECS
T ss_pred             hhhccCEEEEEEEEEEEecCCCcceEEEEEeCCEEEEEEEcCC-CceeEEeeecchhhcccc-ccccccCccceEEEeCC
Confidence            3445678999999998877789999999999999999986541 011234678999997544 33333367899999876


Q ss_pred             -CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          101 -EYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       101 -~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                       .+.++|+|.|++|+++|+.+|++++...
T Consensus       100 ~~~~~~l~a~s~eek~~Wv~~L~~~i~~~  128 (132)
T d1v61a_         100 TVERIVVHCNNNQDFQEWMEQLNRLTKSG  128 (132)
T ss_dssp             SSCEEEECCCCSHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence             5789999999999999999999887543

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=5.8e-11  Score=77.14  Aligned_cols=102  Identities=17%  Similarity=0.113  Sum_probs=75.9

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc-----CCCCceEEEEe
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL-----LNKPFAFELST   99 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~-----~~~~~~f~i~~   99 (143)
                      ...+++|+|.+.+...+.|+.|||+|.++.|.+++........-...+.++|..+.+....+..     ...+++|.|..
T Consensus        25 r~Li~eG~L~~~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~~~f~i~~  104 (162)
T d2dfka2          25 SELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHN  104 (162)
T ss_dssp             CCEEEEEEEEEESSTTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEEE
T ss_pred             ceEEEEEEEEEEEcCCCCceeEEEEEeCCeEEEEEecCCCCCceEEccccchhhceeeecccccccccCccccceEEEEE
Confidence            4568999999987766789999999999999999865422112335678889887544332211     12368899975


Q ss_pred             C--CeEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556          100 G--EYTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       100 ~--~~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      +  +..|.|+|+|++|...|+.+|+.+..
T Consensus       105 ~~~~~~~~~~A~s~~eK~~W~~~l~~~~~  133 (162)
T d2dfka2         105 KETEEVHLFFAKKLEEKIRWLRAFREERK  133 (162)
T ss_dssp             SSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            4  56799999999999999999997754

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=8.7e-11  Score=71.38  Aligned_cols=101  Identities=15%  Similarity=0.029  Sum_probs=76.5

Q ss_pred             cceEEEEEeeCCC-CCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCCeEEE
Q 041556           27 PERSGWLTKQGDY-IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMY  105 (143)
Q Consensus        27 ~~~~G~L~k~~~~-~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~~~~~  105 (143)
                      .+++|.|.+.... .+.-++++++|.+..|.+.+........-.....++|..+.+.+..+ ....+++|.|.++++.+.
T Consensus         4 li~eG~l~~~~~~~~k~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~l~~~~v~~~~d-~~~~~n~f~i~~~~~~~~   82 (109)
T d1zc3b1           4 LVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKD-NPPMKDMFKLLMFPESRI   82 (109)
T ss_dssp             EEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEECC-BTTBSSEEEEEETTEEEE
T ss_pred             EEEeeeEEEEccCCCCcceeEEEEEecCEEEEEEEcCCcceEEEeeeEEeccceEEEEeec-ccccceEEEEccCCCEEE
Confidence            4689999887543 34567899999999998877543211122346688999975554433 235689999999999999


Q ss_pred             EEcCCHHHHHHHHHHHHHHHHhh
Q 041556          106 FVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       106 ~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      |+|+|.+|...|+.+|+.|+...
T Consensus        83 ~~a~s~~eK~~W~~~l~~a~~~~  105 (109)
T d1zc3b1          83 FQAENAKIKREWLEVLEETKRAL  105 (109)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998754

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.1e-09  Score=66.54  Aligned_cols=96  Identities=19%  Similarity=0.206  Sum_probs=70.8

Q ss_pred             ccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCC-------CCccEEEeCCCeEEeecCcccCCCCceEEEE
Q 041556           26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPG-------STPRGVIPVGTCLTVRGAEDLLNKPFAFELS   98 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~-------~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~   98 (143)
                      ..+++|.|.+.+..    +.||++|.+..|.+.+........       -..++.++|..+.+.+..+ ....+++|.|.
T Consensus        26 ~li~eG~l~~~~~~----k~r~~fLF~d~Li~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~-~~~~~~~f~i~  100 (133)
T d1dbha2          26 EFIMEGTLTRVGAK----HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDD-TNEYKHAFEII  100 (133)
T ss_dssp             CEEEEEEEEETTCS----SCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCC-SSSCCSEEEEC
T ss_pred             EEEEEeEEEEecCC----CeEEEEEecCeEEEEEecccccccccCCCccEEEEeeeecccccccccCC-CcccccceeEE
Confidence            46789999987643    689999999999999865421000       0134689999975544433 23568999998


Q ss_pred             eC-CeEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           99 TG-EYTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        99 ~~-~~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      .+ ...+.|+|+|++|+..|+.+|..+..
T Consensus       101 ~~~~~~~~l~a~s~~eK~~W~~~l~~~~~  129 (133)
T d1dbha2         101 LKDENSVIFSAKSAEEKNNWMAALISLQY  129 (133)
T ss_dssp             CTTSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             cCCCcEEEEEECCHHHHHHHHHHHHHHHh
Confidence            76 45799999999999999999986543

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=4e-09  Score=64.76  Aligned_cols=95  Identities=17%  Similarity=0.284  Sum_probs=63.5

Q ss_pred             ceEE-EEEeeCCCCCCeeeEEEEEEC-CeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc---------CCCCceEE
Q 041556           28 ERSG-WLTKQGDYIKTWRRRWFILKQ-GKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL---------LNKPFAFE   96 (143)
Q Consensus        28 ~~~G-~L~k~~~~~~~w~~r~~vL~~-~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~---------~~~~~~f~   96 (143)
                      .++| .|.|.+.. +.+++|||+|.. ..+.+|.+...  ......+.|+|..+..|......         ....++|+
T Consensus        11 l~~G~~l~K~~~~-~~~k~R~f~L~~d~~~i~~~~~~~--~~~~~~~~i~i~~I~~V~~G~~s~~~~~~~~~~~~~~~Fs   87 (119)
T d1maia_          11 LLKGSQLLKVKSS-SWRRERFYKLQEDCKTIWQESRKV--MRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFS   87 (119)
T ss_dssp             HHHCEEEEEESSS-SCEEEEEEEECTTSSEEEECCCCT--TCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEE
T ss_pred             HHcCCeEEEeCCC-CCCEEEEEEEcCCCCEEEEeCCCC--CCCccceEEEHHHceEEEcCCCCchhhhcccCCCcCceEE
Confidence            4556 56666542 234679999974 45556665441  12345678999887555443211         12357899


Q ss_pred             EEe--CCeEEEEEcCCHHHHHHHHHHHHHHH
Q 041556           97 LST--GEYTMYFVADTEKEKEEWINSIGRAI  125 (143)
Q Consensus        97 i~~--~~~~~~~~a~s~~e~~~Wi~al~~~~  125 (143)
                      |+.  ..++++|.|+|++++..|+.+|+..+
T Consensus        88 Iv~~~~~r~l~l~a~s~~~~~~Wv~~L~~L~  118 (119)
T d1maia_          88 IVFKDQRNTLDLIAPSPADAQHWVQGLRKII  118 (119)
T ss_dssp             EEESSSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEcCCCcEEEEEECCHHHHHHHHHHHHHHh
Confidence            974  45789999999999999999998654

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=8.4e-08  Score=58.79  Aligned_cols=104  Identities=16%  Similarity=0.184  Sum_probs=71.0

Q ss_pred             ccccccceEEEEEeeCC--CCCCeeeEEEEEECCeEEEEccCCCCCC--CCCccEEEeCCCeEEeecCcccCCCCceEEE
Q 041556           22 EFWSNPERSGWLTKQGD--YIKTWRRRWFILKQGKLFWFKDSHNITP--GSTPRGVIPVGTCLTVRGAEDLLNKPFAFEL   97 (143)
Q Consensus        22 ~~~~~~~~~G~L~k~~~--~~~~w~~r~~vL~~~~l~~y~~~~~~~~--~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i   97 (143)
                      ......++.|.|.....  ..+..+.||++|.+..|.+-+.......  .......+.+....+.+..+   ..++.|.|
T Consensus         8 ~~~G~Ll~~g~l~v~~~~~~~~k~~~R~~FLF~d~Ll~~K~k~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~f~i   84 (121)
T d1ntya2           8 ESQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVE---GDPCKFAL   84 (121)
T ss_dssp             GGGCCEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCCT---TCTTEEEE
T ss_pred             hhCCcEEEEeEEEEEcccccCCCCcEEEEEeeCCeEEEEEEecCCCCCceeEEEeeEEecceEEEEcCC---CCCceEEE
Confidence            34456789999986543  2346799999999999999775431100  01123356666653333222   45788988


Q ss_pred             Ee-----CCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           98 ST-----GEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        98 ~~-----~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      ..     ....|.|+|.|++++..|+.+|++++...
T Consensus        85 ~~~~~~~~~~~~~l~a~s~~eK~~W~~~I~~~i~eq  120 (121)
T d1ntya2          85 WVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQER  120 (121)
T ss_dssp             EESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             EEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence            53     24568999999999999999999998754

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.8e-08  Score=62.69  Aligned_cols=99  Identities=17%  Similarity=0.118  Sum_probs=68.3

Q ss_pred             cccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCC---------CC----CccEEEeCCCeEEeecCcccCCC
Q 041556           25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITP---------GS----TPRGVIPVGTCLTVRGAEDLLNK   91 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~---------~~----~~~~~i~L~~~~~~~~~~~~~~~   91 (143)
                      ...+++|.|.+....    +.+|++|.+..|.|-+.......         ..    .....+.|..+.+.+. .+....
T Consensus        23 R~li~eG~L~k~~~~----k~r~~FLFnD~Ll~tK~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~~~-~d~~~~   97 (142)
T d1ki1b2          23 RKFLHSGKLYKAKNN----KELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYMYKTPIFLNEVLVKLP-TDPSGD   97 (142)
T ss_dssp             CCEEEECCCBCSSSC----CCCEEEEESSEEEEEEEECC-------CCSCSSCCEEEECSSCEEGGGEEEECC-SSSCCC
T ss_pred             eEEEEeeEEEEecCC----CEEEEEEecCEEEEEEeccccceeccccccccCCceeEEEEcccchhhheeecc-CCcccc
Confidence            445889999875432    68999999999999765442000         00    1123467777644433 333355


Q ss_pred             CceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556           92 PFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus        92 ~~~f~i~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                      .+.|.+..+++.|.|+|+|++|...|+.+|+.|+...
T Consensus        98 ~~~~~~~~~~~~~~l~a~s~~ek~~W~~~I~~Ai~~~  134 (142)
T d1ki1b2          98 EPIFHISHIDRVYTLRAESINERTAWVQKIKAASELY  134 (142)
T ss_dssp             ---CEEEETTEEEECBCSSHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEecCCCEEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence            6788888899999999999999999999999998765

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=7.7e-07  Score=55.68  Aligned_cols=97  Identities=16%  Similarity=0.121  Sum_probs=64.0

Q ss_pred             ccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCCCC--------------CCccEEEeCCCeEEeecCcccCCC
Q 041556           26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPG--------------STPRGVIPVGTCLTVRGAEDLLNK   91 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~~~--------------~~~~~~i~L~~~~~~~~~~~~~~~   91 (143)
                      ..+++|.|..+.. .+..+.|+++|.+..|.+-+........              ......+.+... .+...   ...
T Consensus        24 ~Li~eG~L~~k~~-~~k~k~r~~FLF~D~Ll~tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~---~~~   98 (140)
T d1xcga2          24 KMIHEGPLTWRIS-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAV-LIRSV---ATD   98 (140)
T ss_dssp             CEEEEEEEEECCS-SSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGE-EEEEC---SSC
T ss_pred             eEEEEeeEEEEec-CCCceEEEEEEecCeEEEEEecccceeeccccccccccccceeeecceEecceE-EEecC---CCC
Confidence            4678999975432 2467899999999999998765421000              001112333332 22222   245


Q ss_pred             CceEEEEeC-----CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556           92 PFAFELSTG-----EYTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        92 ~~~f~i~~~-----~~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      +++|.+...     ...+.|+|+|++|...|+.+|++++..
T Consensus        99 ~~~f~li~~~~~~~~~~~~l~A~s~~eK~~Wi~~i~~aI~n  139 (140)
T d1xcga2          99 KRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN  139 (140)
T ss_dssp             SSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCceEEEEEcCCHHHHHHHHHHHHHHHHc
Confidence            678888642     467999999999999999999999875

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=98.61  E-value=9.9e-07  Score=53.40  Aligned_cols=95  Identities=21%  Similarity=0.182  Sum_probs=64.3

Q ss_pred             ceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCC--------------CCCCccEEEeCCCeEEeecCcccCCCCc
Q 041556           28 ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNIT--------------PGSTPRGVIPVGTCLTVRGAEDLLNKPF   93 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~--------------~~~~~~~~i~L~~~~~~~~~~~~~~~~~   93 (143)
                      +++|.|..+.. .+.-+.|+++|.+..|.+-+...+..              ........|.++...+.+...   ..+.
T Consensus         2 i~eG~L~~~~~-~~k~~er~vFLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~e~~~---d~~~   77 (114)
T d1txda2           2 IHEGPLVWKVN-RDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVAT---DNKA   77 (114)
T ss_dssp             EEEEEEEEESS-SSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC----CCE
T ss_pred             ceeeeEEEEec-CCCceEEEEEEecCeEEEEEecccccccccccccccccccceeeecCcEEcccEEEEEcCC---CCCC
Confidence            57999985543 22347899999999888877554200              001123367777754444332   4567


Q ss_pred             eEEEEeCC---eEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           94 AFELSTGE---YTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        94 ~f~i~~~~---~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                      .|.|...+   ..|.|+|.|.++.+.|+.+|+++++
T Consensus        78 ~fli~~~~~~~~~y~l~A~s~~eK~~W~~~I~~~~~  113 (114)
T d1txda2          78 LFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAA  113 (114)
T ss_dssp             EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCceEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            88887642   4689999999999999999998875

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=2.5e-06  Score=53.85  Aligned_cols=104  Identities=14%  Similarity=0.162  Sum_probs=68.3

Q ss_pred             cccccccceEEEEEeeCCC-----------CCCeeeEEEEEECCeEEEEccCCCCCCCC------CccEEEeCCCeEEee
Q 041556           21 IEFWSNPERSGWLTKQGDY-----------IKTWRRRWFILKQGKLFWFKDSHNITPGS------TPRGVIPVGTCLTVR   83 (143)
Q Consensus        21 ~~~~~~~~~~G~L~k~~~~-----------~~~w~~r~~vL~~~~l~~y~~~~~~~~~~------~~~~~i~L~~~~~~~   83 (143)
                      ...+...+++|.+....+.           .+.-+.|||+|.+..|.+-+.........      .....+.++...+.+
T Consensus         7 l~~~G~Ll~qg~~~v~~~~~~~~~~~~~~~~~K~~~R~~FLF~~~Li~cK~~~~~~~~~~~~~~y~~k~~~~~~~~~v~~   86 (147)
T d1kz7a2           7 LGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITE   86 (147)
T ss_dssp             GGGGCCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEEC
T ss_pred             HHHcCCEEEeeeEEEEecCccchhhhhhhhccCCceEEEEEecCcEEEEEecccCCcccccCceEEEeeEEecCCceeEe
Confidence            3445667889999764221           12357999999999999987644211011      123456666653333


Q ss_pred             cCcccCCCCceEEEE--eCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 041556           84 GAEDLLNKPFAFELS--TGEYTMYFVADTEKEKEEWINSIGRAIVQ  127 (143)
Q Consensus        84 ~~~~~~~~~~~f~i~--~~~~~~~~~a~s~~e~~~Wi~al~~~~~~  127 (143)
                      ..+   ...+.|.+.  .+...|.|+|.|.++...|+.+|+.++..
T Consensus        87 ~~~---~~~~~f~~~~~~~~~~~~l~a~s~eeK~~W~~~I~~~l~~  129 (147)
T d1kz7a2          87 NVK---GDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTS  129 (147)
T ss_dssp             CBT---TBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cCC---CCcceEEEEeCCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            222   345566554  45778999999999999999999987644

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.21  E-value=5.9e-06  Score=50.29  Aligned_cols=102  Identities=11%  Similarity=0.071  Sum_probs=69.9

Q ss_pred             ccccccceEEEEEeeCCCCCCeeeEEEEEECCeEEEEccCCCCC-CCCCccEEEeCCCeEEeecCcccCCCCceEEEEeC
Q 041556           22 EFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNIT-PGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTG  100 (143)
Q Consensus        22 ~~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~y~~~~~~~-~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~  100 (143)
                      ..+...++.|.+....+.. .-+.|+++|.+..|.+.+...... ..-..++.|+|+.+.+.+..    +....|.|...
T Consensus         5 ~~~G~ll~~~~f~v~~~~~-k~k~R~vFLF~~~ll~~K~~~~~~~~~y~~K~~i~l~~~~v~e~~----gd~~~F~i~~~   79 (119)
T d1fhoa_           5 GKLGRIIRHDAFQVWEGDE-PPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHT----TDEDTIVLQPQ   79 (119)
T ss_dssp             CCCCCSSEEEEEEECSTTC-SCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEEC----TTCCEEEEECC
T ss_pred             hhCCceEEEeEEEEEeCCC-CceEEEEEEEcCeEEEEEeccCCCCceEEEecEEECCceEEEEcC----CCCcEEEEEeC
Confidence            3456778999998875543 445789999999998887654210 11235678999987554433    34567888643


Q ss_pred             --Ce-----EEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          101 --EY-----TMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       101 --~~-----~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                        +.     .+.++|.|+++++.|+.+|+.++...
T Consensus        80 ~~~~~~~~~~~~~~a~s~~~K~~Wv~~I~e~~~~~  114 (119)
T d1fhoa_          80 EPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQEKY  114 (119)
T ss_dssp             STTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCHHH
T ss_pred             CCCCCcceEEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence              21     34567899999999999998776554

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=0.00018  Score=41.53  Aligned_cols=92  Identities=17%  Similarity=0.231  Sum_probs=69.1

Q ss_pred             cceEEEEEeeCC-----CCCCeeeEEEEEECCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCcccCCCCceEEEEeCC
Q 041556           27 PERSGWLTKQGD-----YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGE  101 (143)
Q Consensus        27 ~~~~G~L~k~~~-----~~~~w~~r~~vL~~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~~~  101 (143)
                      ..+.|.|..+.+     +.-.|.+...-|.+..|......        -...|+|.=|.+.......-.....|+|.+++
T Consensus         6 a~rsGlLE~~~~~~~~~~~~rW~rVl~~L~ed~Lt~s~~~--------d~k~IPLKmcyvtR~~~~~D~EnR~lElhSpD   77 (105)
T d2adza1           6 APRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPLS--------EAKHVSLKMAYVSRRCTPTDPEPRYLEICAAD   77 (105)
T ss_dssp             CCEEEEEEECCCCSSSSSCCCCEEEEEEEETTEEEEESSC--------SCEEEETTTCEEEEECCSSCCSSCEEEEEETT
T ss_pred             CCccceEEEeeccCCCccccceeeeeeecccceEEeeccc--------ccceeeeeeEEeeecccCCCCcccEEEEECCC
Confidence            468899998743     23469999999999999886433        36789998775543322111457899999874


Q ss_pred             --eEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556          102 --YTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus       102 --~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                        ...+|.|.+..+++.|..||+..++
T Consensus        78 G~~t~iLR~kD~a~A~~WF~Aihs~i~  104 (105)
T d2adza1          78 GQDAVFLRAKDEASARSWAGAIQAQIG  104 (105)
T ss_dssp             TTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHHhhc
Confidence              5688999999999999999998764

>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.22  Score=29.78  Aligned_cols=92  Identities=12%  Similarity=0.056  Sum_probs=57.2

Q ss_pred             ceEEEEE-eeCCCCCCeeeEEEEEE--CCeEEEEccCCCCCCCCCccEEEeCCCeEEeecCccc----------------
Q 041556           28 ERSGWLT-KQGDYIKTWRRRWFILK--QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL----------------   88 (143)
Q Consensus        28 ~~~G~L~-k~~~~~~~w~~r~~vL~--~~~l~~y~~~~~~~~~~~~~~~i~L~~~~~~~~~~~~----------------   88 (143)
                      +.+|-.. |.......-+.+.|.|.  +..|+| +++.      .....++|.....+......                
T Consensus         7 L~~G~~f~K~~~~~~~~~~~~frlD~~g~~L~W-~~~~------k~~~~l~i~~I~evR~G~~~~~~k~~kl~~~~~~~~   79 (131)
T d2zkmx3           7 LSQGERFIKWDDETTVASPVILRVDPKGYYLYW-TYQS------KEMEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDF   79 (131)
T ss_dssp             HHHCEEEEEECTTTCCEEEEEEEECTTSCEEEE-EETT------SCEEEEEGGGEEEEEEGGGSCCCCSHHHHHHTTCSS
T ss_pred             HhCCCeEEEEcCCCCccceEEEEECCCCCEEEE-ECCC------CceeEEEecceeeEEeccccCCccHHHHhhhhhccC
Confidence            3445443 44433445667778776  334555 4433      23457888876554433110                


Q ss_pred             ---CCCCceEEEEeCC-----eEEEEEcCCHHHHHHHHHHHHHHHH
Q 041556           89 ---LNKPFAFELSTGE-----YTMYFVADTEKEKEEWINSIGRAIV  126 (143)
Q Consensus        89 ---~~~~~~f~i~~~~-----~~~~~~a~s~~e~~~Wi~al~~~~~  126 (143)
                         .....+|.|+...     +.+.|.|.+.++++.|+..|+..+.
T Consensus        80 ~~~~~e~~~ftIvyg~~~v~l~~l~lVA~s~~~a~~W~~gL~~L~~  125 (131)
T d2zkmx3          80 PDNSFLLKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVK  125 (131)
T ss_dssp             TTCCGGGTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred             cCCCccccEEEEEECCCcccceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence               0113599998752     6788999999999999999987764

>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.94  E-value=0.55  Score=28.76  Aligned_cols=88  Identities=13%  Similarity=0.147  Sum_probs=58.3

Q ss_pred             CCeeeEEEEEECCeEEEEccCCCCC------------CC---CCccEEEeCCCeEEeecCcccCCCCceEEEEe------
Q 041556           41 KTWRRRWFILKQGKLFWFKDSHNIT------------PG---STPRGVIPVGTCLTVRGAEDLLNKPFAFELST------   99 (143)
Q Consensus        41 ~~w~~r~~vL~~~~l~~y~~~~~~~------------~~---~~~~~~i~L~~~~~~~~~~~~~~~~~~f~i~~------   99 (143)
                      +.-.-.-||++.-.+..|+......            .+   ..-+-+|+++...+-..........+.+.|+.      
T Consensus        48 k~pel~~FVFK~AVV~vcke~sk~KkKl~~~~~~~~~~e~d~~rFr~mIP~~alQVR~~~~~~~es~~vwEiiH~kSe~e  127 (162)
T d1foea2          48 KEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSADAEANAVCEIVHVKSESE  127 (162)
T ss_dssp             SSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEECCCCTTTTSCCEEEEEECCBTGG
T ss_pred             CCCcEEEEEecceEEEEEcccchhhhhccCccccccccccCceeEEEEeeeeeeEeecccccCCCcceEEEEEeeccccc
Confidence            3445556888888888888644210            00   11234777776543333222234577888875      


Q ss_pred             --CCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 041556          100 --GEYTMYFVADTEKEKEEWINSIGRAIVQH  128 (143)
Q Consensus       100 --~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  128 (143)
                        +++.|.|++.+.+....-+.+|++.+...
T Consensus       128 gRpE~vfqlc~St~E~K~~flK~Ir~ilre~  158 (162)
T d1foea2         128 GRPERVFHLCCSSPESRKDFLKSVHSILRDK  158 (162)
T ss_dssp             GBCCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence              25789999999999999999999887654