Citrus Sinensis ID: 041557

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
AKTVTSTIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTFTAPISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAWAV
Secondary Structure (PSIPRED)
cccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEEccccccccccEEEEEccccEEEEccccEEEcccHHHHHHHHHHHHcEEEccccccccHHHHHccccEEEccEEEEEEEEEccEEEEEcccEEEccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccccccccccccccccccccccccccccHHHHHHcccccccEEccccccccccEEEEccHHHHHHHHHHHHHcccEEEEEEcccccccccccEEEccccccEEccccEEEEcccHHHHHHHHHHHHHHHcccccHHHHHHccccccEEEEEcEEEcccccccccEEEcccccEEEEc
Coil and Loop (DISEMBL)
AKTVTSTIIKatssqpktnstnaqkptcrncrrgssygsprrsalkktftqkqftftapissnphvkiIGGGMAVLACALRldkrgvksnvfdmgnpdlegrmgtrmigrqplifdhatqfftvndsrfgELVDVCWKVVLLLGysksqnlnifqtSKVNVVRTCwisnlepfngmwylgengktawav
Flexible Loop (DISEMBL)
aktvtstiikatssqpktnstnaqkptcrncrrgssygsprrsaLKKTFTQKqftftapissnphVKIIGGGMAVLACALRLDKrgvksnvfdmgnpdlegrMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLLGYsksqnlnifqtSKVNVVRTCWISNlepfngmwylgengktawav
Low Complexity Region (SEG)
AKTVTSTIIKATSSQPKTNSTNAQKPTCRNCrrgssygsprrsALkktftqkqftftAPISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAWAV
Disordered region (IsUnstruct)
*************************************************TQKQFTFTAPISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK*****
Disordered Region (DISOPRED)
*****S********************************************************NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWY*G*********
Disordered Region (DISEMBL)
AKTVTSTIIKA****************CRNC**************KKTFTQKQFTFTAPISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAWAV
Disordered Region (DISPRO)
**TVTSTIIKATS*********************************KTF**KQFTFTAPISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAWAV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
AKTVTSTIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTFTAPISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAWAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
255580905	467	conserved hypothetical protein [Ricinus	0.904	0.366	0.542	8e-48
224130614	496	predicted protein [Populus trichocarpa]	0.947	0.360	0.518	2e-46
449443231	545	PREDICTED: uncharacterized protein LOC10	0.931	0.322	0.478	2e-44
449483109	536	PREDICTED: uncharacterized protein LOC10	0.931	0.328	0.478	4e-44
225463946	467	PREDICTED: uncharacterized protein LOC10	0.883	0.357	0.517	8e-44
296087896	518	unnamed protein product [Vitis vinifera]	0.883	0.322	0.517	1e-43
297828968	485	oxidoreductase [Arabidopsis lyrata subsp	0.957	0.373	0.455	5e-40
18396966	486	FAD/NAD(P)-binding oxidoreductase domain	0.957	0.372	0.450	1e-39
414868817	266	TPA: hypothetical protein ZEAMMB73_11144	0.883	0.627	0.388	5e-29
226530158	505	uncharacterized protein LOC100272440 [Ze	0.883	0.330	0.388	8e-29

>gi|255580905|ref|XP_002531271.1| conserved hypothetical protein [Ricinus communis] gi|223529104|gb|EEF31084.1| conserved hypothetical protein [Ricinus communis]

 Score =  195 bits (495), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 129/190 (67%), Gaps = 19/190 (10%)

Query: 7   TIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTFTAPISSNPHV 66
           T+   T+SQP       ++PT +N R+ SSYG+ RRS LKKTF+Q+Q  F+ P+S +PHV
Sbjct: 41  TLTCTTTSQPN------KRPTSKN-RKKSSYGTSRRSVLKKTFSQEQVNFSFPVSDDPHV 93

Query: 67  KIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVND 126
            IIGGGMA L CA+ L+KRGVKS VFD GN  L GRMGTR+I  QPL+FDHA QFFTV+D
Sbjct: 94  GIIGGGMAGLVCAVNLEKRGVKSTVFDTGNHGLGGRMGTRVIDPQPLVFDHAAQFFTVSD 153

Query: 127 SRFGELVDVCWKVVLLL------------GYSKSQNLNIFQTSKVNVVRTCWISNLEPFN 174
            +F +LVD   +  L+             G+S + +  + QTS V VVR CWIS LEPFN
Sbjct: 154 PQFAQLVDGWLEKGLIRQWQGTIGELEKGGHSLTYSGCLLQTSMVEVVRPCWISRLEPFN 213

Query: 175 GMWYLGENGK 184
           GMW+L ENGK
Sbjct: 214 GMWHLSENGK 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130614|ref|XP_002328333.1| predicted protein [Populus trichocarpa] gi|222838048|gb|EEE76413.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/212 (51%), Positives = 130/212 (61%), Gaps = 33/212 (15%)

Query: 2   KTVTSTIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTFTAPIS 61
           KT+T T  K  +  P   + + +KPT +  R+ SSYG+ RRS LKKTF Q+Q TFT+ +S
Sbjct: 40  KTLTCTTSKPNNKSP---TMDGRKPTSKKTRK-SSYGTSRRSVLKKTFIQEQVTFTSQLS 95

Query: 62  SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQF 121
           S+PHV IIGGGMA L CAL L+KRGVKS VFD G   L GRMGTR+I  QPLIFDHA QF
Sbjct: 96  SDPHVGIIGGGMAGLLCALSLEKRGVKSTVFDTGIHGLGGRMGTRVIDPQPLIFDHAAQF 155

Query: 122 FTVNDSRFGELVDVC--------WKVVL--------LLGYSKSQNLNI------------ 153
           FTV+D RF ELVD          W+ ++         L +  S    I            
Sbjct: 156 FTVSDPRFSELVDDWLEKGLVRQWQGIIGELEVGGQFLPFPSSTPRYISVNGMRSLADSI 215

Query: 154 -FQTSKVNVVRTCWISNLEPFNGMWYLGENGK 184
             QT  VNVVR CWIS LEPFNGMW+L ENGK
Sbjct: 216 LSQTCMVNVVRPCWISKLEPFNGMWHLSENGK 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443231|ref|XP_004139383.1| PREDICTED: uncharacterized protein LOC101219713 [Cucumis sativus]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/211 (47%), Positives = 127/211 (60%), Gaps = 35/211 (16%)

Query: 9   IKATSSQPKTNST-NAQKPTCRNC------RRGSSYGSPRRSALKKTFTQKQFTFTAPIS 61
           + A+ SQPK NS  N++KPT          RR SSYG+ RRS LKKTF Q+Q TFT+ +S
Sbjct: 39  VVASHSQPKPNSKHNSRKPTMDGSKPTSKFRRKSSYGTSRRSILKKTFNQEQVTFTSALS 98

Query: 62  SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQF 121
            +P + IIGGGMA + CAL L+KRGV+S VFD G   L GRMGTR +G +PL+FDHA QF
Sbjct: 99  DDPLIAIIGGGMAGIMCALSLEKRGVRSTVFDTGIHGLGGRMGTRSLGPEPLMFDHAAQF 158

Query: 122 FTVNDSRFGELVD----------------------------VCWKVVLLLGYSKSQNLNI 153
           FTV D++F +LVD                             C + +   G     +  +
Sbjct: 159 FTVTDNQFAQLVDGWLAADLVKEWKGTVGELELGGRFVPMSSCPRYIGTNGMRPLADSLL 218

Query: 154 FQTSKVNVVRTCWISNLEPFNGMWYLGENGK 184
            QTS +NV+R CWIS LEPFNGMW+L ENGK
Sbjct: 219 SQTSLINVIRPCWISKLEPFNGMWHLSENGK 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483109|ref|XP_004156495.1| PREDICTED: uncharacterized protein LOC101226129 [Cucumis sativus]

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/211 (47%), Positives = 127/211 (60%), Gaps = 35/211 (16%)

Query: 9   IKATSSQPKTNST-NAQKPTCRNC------RRGSSYGSPRRSALKKTFTQKQFTFTAPIS 61
           + A+ SQPK NS  N++KPT          RR SSYG+ RRS LKKTF Q+Q TFT+ +S
Sbjct: 39  VVASHSQPKPNSKHNSRKPTMDGSKPTSKFRRKSSYGTSRRSILKKTFNQEQVTFTSALS 98

Query: 62  SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQF 121
            +P + IIGGGMA + CAL L+KRGV+S VFD G   L GRMGTR +G +PL+FDHA QF
Sbjct: 99  DDPLIAIIGGGMAGIMCALSLEKRGVRSTVFDTGIHGLGGRMGTRSLGPEPLMFDHAAQF 158

Query: 122 FTVNDSRFGELVD----------------------------VCWKVVLLLGYSKSQNLNI 153
           FTV D++F +LVD                             C + +   G     +  +
Sbjct: 159 FTVTDNQFAQLVDGWLAADLVKEWKGTVGELELGGRFVPMSSCPRYIGTNGMRPLADSLL 218

Query: 154 FQTSKVNVVRTCWISNLEPFNGMWYLGENGK 184
            QTS +NV+R CWIS LEPFNGMW+L ENGK
Sbjct: 219 SQTSLINVIRPCWISKLEPFNGMWHLSENGK 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463946|ref|XP_002268010.1| PREDICTED: uncharacterized protein LOC100241002 [Vitis vinifera]

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 102/197 (51%), Positives = 123/197 (62%), Gaps = 30/197 (15%)

Query: 17  KTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTFTAPISSNPHVKIIGGGMAVL 76
           K +S   QKPT R  R+ +SYG+ R+S LKK+F Q+Q  FTAP+S +P V IIGGGMA L
Sbjct: 28  KASSMQGQKPTSRKPRK-ASYGASRKSILKKSFNQEQVMFTAPLSDDPAVAIIGGGMAGL 86

Query: 77  ACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVD-- 134
           +CAL L+KRGV+S VFD G   L GRMGTRMI  Q LIFDHA QFFTV D RF +LVD  
Sbjct: 87  SCALYLEKRGVRSTVFDTGVHGLGGRMGTRMIDPQSLIFDHAAQFFTVGDPRFAQLVDGW 146

Query: 135 -----------------VCWKVVLL-------LGYSKSQNLN---IFQTSKVNVVRTCWI 167
                            V  + V L       +G +  + L    + QT+ VNVVR CWI
Sbjct: 147 LEKGLVQQWQGMIGELEVGGQFVPLPSLPPRYIGVNGMRPLADSILSQTTMVNVVRPCWI 206

Query: 168 SNLEPFNGMWYLGENGK 184
           S L+PFNGMW+L ENGK
Sbjct: 207 SKLDPFNGMWHLSENGK 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087896|emb|CBI35179.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/197 (51%), Positives = 123/197 (62%), Gaps = 30/197 (15%)

Query: 17  KTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTFTAPISSNPHVKIIGGGMAVL 76
           K +S   QKPT R  R+ +SYG+ R+S LKK+F Q+Q  FTAP+S +P V IIGGGMA L
Sbjct: 28  KASSMQGQKPTSRKPRK-ASYGASRKSILKKSFNQEQVMFTAPLSDDPAVAIIGGGMAGL 86

Query: 77  ACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVD-- 134
           +CAL L+KRGV+S VFD G   L GRMGTRMI  Q LIFDHA QFFTV D RF +LVD  
Sbjct: 87  SCALYLEKRGVRSTVFDTGVHGLGGRMGTRMIDPQSLIFDHAAQFFTVGDPRFAQLVDGW 146

Query: 135 -----------------VCWKVVLL-------LGYSKSQNLN---IFQTSKVNVVRTCWI 167
                            V  + V L       +G +  + L    + QT+ VNVVR CWI
Sbjct: 147 LEKGLVQQWQGMIGELEVGGQFVPLPSLPPRYIGVNGMRPLADSILSQTTMVNVVRPCWI 206

Query: 168 SNLEPFNGMWYLGENGK 184
           S L+PFNGMW+L ENGK
Sbjct: 207 SKLDPFNGMWHLSENGK 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828968|ref|XP_002882366.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297328206|gb|EFH58625.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 120/213 (56%), Gaps = 32/213 (15%)

Query: 3   TVTSTIIKATSSQPKTNSTN--AQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTFTAPI 60
           + T  II    SQ  T  +N  ++ P  +  R  S YG+ RRS LKK+F Q+Q TFTA I
Sbjct: 30  STTRKIITTCDSQKNTGKSNPSSRNPNFQKRRNSSKYGTSRRSILKKSFLQEQVTFTARI 89

Query: 61  SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQ 120
           S +PHV IIGGGMA L CAL L+ RGV+S VFD G   L GR+GTR+I  Q LIFDHA Q
Sbjct: 90  SDDPHVAIIGGGMAGLVCALNLEARGVQSTVFDTGIHGLGGRLGTRIIEPQGLIFDHAAQ 149

Query: 121 FFTVNDSRFGELVDVC--------WK----------------------VVLLLGYSKSQN 150
           FFT +DSRF +LVD          WK                       + + G     +
Sbjct: 150 FFTADDSRFIKLVDGWLEKGLVREWKGAVGELEVGGSFSQFPSSSPPRYIAVNGMLSLAD 209

Query: 151 LNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG 183
             + ++  VN+VR CWIS LEP NGMW+L ENG
Sbjct: 210 SLLLESQMVNLVRPCWISKLEPLNGMWHLSENG 242

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396966|ref|NP_566235.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gi|6175169|gb|AAF04895.1|AC011437_10 unknown protein [Arabidopsis thaliana] gi|15215628|gb|AAK91359.1| AT3g04650/F7O18_13 [Arabidopsis thaliana] gi|28416461|gb|AAO42761.1| At3g04650/F7O18_13 [Arabidopsis thaliana] gi|332640593|gb|AEE74114.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 119/213 (55%), Gaps = 32/213 (15%)

Query: 3   TVTSTIIKATSSQPKTNSTN--AQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTFTAPI 60
           + T  II    SQ  T  +N  ++ P  +  R  S YG+ RRS LKK+F Q+Q TFTA +
Sbjct: 30  STTRKIITTCDSQNNTGKSNPSSRNPNFQKRRNSSKYGTSRRSILKKSFLQEQVTFTARV 89

Query: 61  SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQ 120
           S +PHV IIGGGMA L CAL L+ RGV+S VFD G   L GR+GTR+I  Q LIFDHA Q
Sbjct: 90  SDDPHVAIIGGGMAGLVCALNLEARGVQSTVFDTGIHGLGGRLGTRIIEPQGLIFDHAAQ 149

Query: 121 FFTVNDSRFGELVDVC--------WK----------------------VVLLLGYSKSQN 150
           FFT +DSRF +LVD          WK                       +   G     +
Sbjct: 150 FFTADDSRFIKLVDGWLEKGLVREWKGAVGELEIGGSFSQFPSSSPPRYIAANGMRSLAD 209

Query: 151 LNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG 183
             + ++  VN+VR CWIS LEP NGMW+L ENG
Sbjct: 210 SLLLESQMVNLVRPCWISKLEPLNGMWHLSENG 242

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414868817|tpg|DAA47374.1| TPA: hypothetical protein ZEAMMB73_111446, partial [Zea mays]

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/198 (38%), Positives = 106/198 (53%), Gaps = 31/198 (15%)

Query: 17  KTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTFTAPISSNPHVKIIGGGMAVL 76
           ++      + + R  RRG   G  RRSA+KK+F Q+Q  F+ P+S++P V +IGGG + L
Sbjct: 26  ESGGATPPRASPRRGRRGKP-GFSRRSAIKKSFHQEQVVFSTPVSTDPTVAVIGGGASGL 84

Query: 77  ACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI-GRQPLIFDHATQFFTVNDSRFGELVDV 135
           +CA  L  RGV+S VFD G   L GRM TR + G + L+FDHA QFFT +D RF  LV+ 
Sbjct: 85  SCATSLAARGVRSVVFDTGMHGLGGRMATRFVDGGKQLVFDHAAQFFTASDERFQRLVNE 144

Query: 136 ---------------------CWKVVLLL--------GYSKSQNLNIFQTSKVNVVRTCW 166
                                C++ +  L        G     +  + +T  + V+R CW
Sbjct: 145 WLDRGLVREWSGLIGELEAGGCFRPIPSLTPRYIGVNGMRPLADAMLPETDMIKVLRPCW 204

Query: 167 ISNLEPFNGMWYLGENGK 184
           IS LEPFNG+W L EN K
Sbjct: 205 ISKLEPFNGLWRLFENEK 222

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226530158|ref|NP_001140386.1| uncharacterized protein LOC100272440 [Zea mays] gi|223973745|gb|ACN31060.1| unknown [Zea mays]

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 77/198 (38%), Positives = 106/198 (53%), Gaps = 31/198 (15%)

Query: 17  KTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTFTAPISSNPHVKIIGGGMAVL 76
           ++      + + R  RRG   G  RRSA+KK+F Q+Q  F+ P+S++P V +IGGG + L
Sbjct: 26  ESGGATPPRASPRRGRRGKP-GFSRRSAIKKSFHQEQVVFSTPVSTDPTVAVIGGGASGL 84

Query: 77  ACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI-GRQPLIFDHATQFFTVNDSRFGELVDV 135
           +CA  L  RGV+S VFD G   L GRM TR + G + L+FDHA QFFT +D RF  LV+ 
Sbjct: 85  SCATSLAARGVRSVVFDTGMHGLGGRMATRFVDGGKQLVFDHAAQFFTASDERFQRLVNE 144

Query: 136 ---------------------CWKVVLLL--------GYSKSQNLNIFQTSKVNVVRTCW 166
                                C++ +  L        G     +  + +T  + V+R CW
Sbjct: 145 WLDRGLVREWSGLIGELEAGGCFRPIPSLTPRYIGVNGMRPLADAMLPETDMIKVLRPCW 204

Query: 167 ISNLEPFNGMWYLGENGK 184
           IS LEPFNG+W L EN K
Sbjct: 205 ISKLEPFNGLWRLFENEK 222

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
TAIR|locus:2084903	486	AT3G04650 [Arabidopsis thalian	0.698	0.271	0.440	2.9e-31

TAIR|locus:2084903 AT3G04650 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
 Identities = 59/134 (44%), Positives = 72/134 (53%)

Query:     3 TVTSTIIKATSSQPKTNSTN--AQKPTCRNCXXXXXXXXXXXXALXXXXXXXXXXXXAPI 60
             + T  II    SQ  T  +N  ++ P  +               L            A +
Sbjct:    30 STTRKIITTCDSQNNTGKSNPSSRNPNFQKRRNSSKYGTSRRSILKKSFLQEQVTFTARV 89

Query:    61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQ 120
             S +PHV IIGGGMA L CAL L+ RGV+S VFD G   L GR+GTR+I  Q LIFDHA Q
Sbjct:    90 SDDPHVAIIGGGMAGLVCALNLEARGVQSTVFDTGIHGLGGRLGTRIIEPQGLIFDHAAQ 149

Query:   121 FFTVNDSRFGELVD 134
             FFT +DSRF +LVD
Sbjct:   150 FFTADDSRFIKLVD 163

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_70000013 hypothetical protein (496 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	189
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	6e-08
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	3e-06
TIGR03378	419	TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate d	5e-04
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	0.002
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	0.002
PRK05329	422	PRK05329, PRK05329, anaerobic glycerol-3-phosphate	0.004

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 64  PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI--GRQPLIFDHATQF 121
           P + I+G G+A LA A  L + G +  VF+ G   + GR+ TR +  GR    FDH  Q+
Sbjct: 2   PSIAIVGAGIAGLAAAYALREAGREVTVFEKGR-GVGGRLATRRLDGGR----FDHGAQY 56

Query: 122 FTVNDSRFGELVD 134
           F   D  F   V+
Sbjct: 57  FKPRDELFLRAVE 69

Length = 331

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 42.8 bits (102), Expect = 3e-06
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 68  IIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDS 127
           I+G G++ L  A  L KRG    V +  +  + G   +          D+    F  +  
Sbjct: 1   IVGAGLSGLVAAYLLAKRGKDVLVLEKRD-RIGGNAYSERDPG--YRHDYGAHIFHTSYP 57

Query: 128 RFGELVD 134
              EL+D
Sbjct: 58  NVRELLD 64

Length = 66

>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 9/48 (18%)

Query: 66  VKIIGGGMAVLACALRLDKRGVKSNV---------FDMGNPDLEGRMG 104
           V IIGGG+A L+CALRL + G K  +         F  G+ DL  R+ 
Sbjct: 3   VIIIGGGLAGLSCALRLAEAGKKCAIIAAGQSALHFSSGSLDLLSRLP 50

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase [Energy metabolism, Anaerobic]. Length = 419

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 61  SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIG 109
                V +IG G+  LA A  L + G+K  V +  N  + GR  T  + 
Sbjct: 1   MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEK-NDRVGGRARTFELD 48

Length = 487

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 49  FTQKQFTFTAPISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFD 93
                  F     +   V +IG G A L  A RL ++G    +F+
Sbjct: 126 METGWVLFKRAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFE 170

Length = 457

>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 68 IIGGGMAVLACALRLDKRGVK 88
          +IGGG+A L  AL   + G +
Sbjct: 7  VIGGGLAGLTAALAAAEAGKR 27

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.78
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.45
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.44
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.42
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.42
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.4
PRK12831	464	putative oxidoreductase; Provisional	99.4
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.39
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.38
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.36
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.36
COG2081	408	Predicted flavoproteins [General function predicti	99.34
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.3
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.3
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.27
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.26
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.26
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.23
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.22
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.21
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.2
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.19
PRK07208	479	hypothetical protein; Provisional	99.18
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.17
PLN02268	435	probable polyamine oxidase	99.15
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.15
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.11
PRK07233	434	hypothetical protein; Provisional	99.11
PLN02576	496	protoporphyrinogen oxidase	99.11
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.1
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.09
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.09
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.09
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.08
PRK13984	604	putative oxidoreductase; Provisional	99.07
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.05
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.04
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.02
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.01
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.99
COG3349	485	Uncharacterized conserved protein [Function unknow	98.99
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.98
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.98
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.97
PRK06753	373	hypothetical protein; Provisional	98.94
PLN02568	539	polyamine oxidase	98.93
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.93
PRK07588	391	hypothetical protein; Provisional	98.92
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.91
PLN02612	567	phytoene desaturase	98.91
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.91
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.9
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.9
PRK07236	386	hypothetical protein; Provisional	98.9
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.89
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.88
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.88
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.88
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.87
PRK09126	392	hypothetical protein; Provisional	98.86
PRK10157	428	putative oxidoreductase FixC; Provisional	98.85
PRK06847	375	hypothetical protein; Provisional	98.85
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.85
PLN02487	569	zeta-carotene desaturase	98.84
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.83
PRK05868	372	hypothetical protein; Validated	98.82
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.82
PRK08163	396	salicylate hydroxylase; Provisional	98.81
PRK10015	429	oxidoreductase; Provisional	98.81
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.81
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.81
PLN02529	738	lysine-specific histone demethylase 1	98.8
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.8
PRK08013	400	oxidoreductase; Provisional	98.8
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.79
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.79
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.78
PLN02676	487	polyamine oxidase	98.78
PRK11445	351	putative oxidoreductase; Provisional	98.78
PRK06834	488	hypothetical protein; Provisional	98.77
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.77
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.77
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.77
PRK06475	400	salicylate hydroxylase; Provisional	98.76
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.76
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.75
PRK06184	502	hypothetical protein; Provisional	98.74
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.73
PRK07190	487	hypothetical protein; Provisional	98.73
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.73
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.73
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.72
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.72
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.72
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.72
PRK10262	321	thioredoxin reductase; Provisional	98.71
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.71
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.71
PRK07045	388	putative monooxygenase; Reviewed	98.7
COG0579	429	Predicted dehydrogenase [General function predicti	98.7
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.69
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.69
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.68
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.68
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.65
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.65
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.64
PRK08244	493	hypothetical protein; Provisional	98.64
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.6
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.59
PLN03000	881	amine oxidase	98.59
PLN02463	447	lycopene beta cyclase	98.58
PRK09897	534	hypothetical protein; Provisional	98.58
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.57
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.55
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.53
PLN02852	491	ferredoxin-NADP+ reductase	98.52
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.5
PRK06996	398	hypothetical protein; Provisional	98.48
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.46
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.45
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	98.45
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.41
PLN02697	529	lycopene epsilon cyclase	98.41
PLN02661	357	Putative thiazole synthesis	98.39
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	98.38
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.37
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.37
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.37
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.36
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.35
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.35
PRK06116	450	glutathione reductase; Validated	98.34
PLN02976	1713	amine oxidase	98.34
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.34
PTZ00188	506	adrenodoxin reductase; Provisional	98.34
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.34
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.34
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.33
PRK06370	463	mercuric reductase; Validated	98.33
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.32
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.31
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.31
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.31
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.3
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.3
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.3
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.3
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.29
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.29
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.27
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.27
PRK06185	407	hypothetical protein; Provisional	98.27
TIGR02053	463	MerA mercuric reductase. This model represents the	98.26
PRK08274	466	tricarballylate dehydrogenase; Validated	98.25
PRK07538	413	hypothetical protein; Provisional	98.25
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.24
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.24
PRK14694	468	putative mercuric reductase; Provisional	98.24
PRK06126	545	hypothetical protein; Provisional	98.22
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.22
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.21
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.21
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.21
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.2
PRK07121	492	hypothetical protein; Validated	98.2
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.17
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.16
PLN02507	499	glutathione reductase	98.15
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.14
PRK13748	561	putative mercuric reductase; Provisional	98.13
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.13
PRK14727	479	putative mercuric reductase; Provisional	98.12
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.11
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.1
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.1
PLN02985	514	squalene monooxygenase	98.1
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.1
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.09
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.09
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.09
PTZ00052	499	thioredoxin reductase; Provisional	98.09
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.07
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.07
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.07
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.07
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.05
PTZ00058	561	glutathione reductase; Provisional	98.05
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.02
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.01
PRK08294	634	phenol 2-monooxygenase; Provisional	98.01
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.0
PTZ00367	567	squalene epoxidase; Provisional	98.0
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.0
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.99
PRK07804	541	L-aspartate oxidase; Provisional	97.99
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.99
PRK12839	572	hypothetical protein; Provisional	97.98
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.97
PRK07846	451	mycothione reductase; Reviewed	97.96
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.95
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.95
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.95
PRK05257	494	malate:quinone oxidoreductase; Validated	97.94
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.94
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.94
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.93
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.93
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.93
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.92
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.92
PLN02546	558	glutathione reductase	97.92
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.92
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.92
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.92
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.9
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.9
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.9
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.89
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.89
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.89
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.87
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.86
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.86
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.85
PRK06116	450	glutathione reductase; Validated	97.85
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.85
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.85
PLN02507	499	glutathione reductase	97.85
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.85
PRK08401	466	L-aspartate oxidase; Provisional	97.84
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.84
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.84
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.83
PLN02815	594	L-aspartate oxidase	97.82
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.81
PRK06175	433	L-aspartate oxidase; Provisional	97.81
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.81
TIGR02053	463	MerA mercuric reductase. This model represents the	97.8
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.8
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.8
PRK07395	553	L-aspartate oxidase; Provisional	97.8
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.8
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.79
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.79
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.77
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.76
PRK08071	510	L-aspartate oxidase; Provisional	97.76
PRK08275	554	putative oxidoreductase; Provisional	97.76
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.75
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.75
PRK06370	463	mercuric reductase; Validated	97.74
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.74
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.74
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.73
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.72
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.72
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.72
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.71
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.71
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.71
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.7
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.7
PRK13748	561	putative mercuric reductase; Provisional	97.68
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.68
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.68
PRK14727	479	putative mercuric reductase; Provisional	97.68
PRK02106	560	choline dehydrogenase; Validated	97.67
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.66
PRK09077	536	L-aspartate oxidase; Provisional	97.66
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.66
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.65
PRK14694	468	putative mercuric reductase; Provisional	97.64
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.63
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.61
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	97.61
PTZ00052	499	thioredoxin reductase; Provisional	97.56
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.56
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.55
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.54
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.53
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.52
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.52
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.51
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.5
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.48
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.46
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.46
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.45
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.44
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.42
PRK07512	513	L-aspartate oxidase; Provisional	97.42
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.41
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.39
COG3573	552	Predicted oxidoreductase [General function predict	97.38
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.36
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.33
PRK07846	451	mycothione reductase; Reviewed	97.33
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.32
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.32
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.31
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.3
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.28
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.28
PLN02546	558	glutathione reductase	97.27
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.27
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.25
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.25
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.22
PTZ00058	561	glutathione reductase; Provisional	97.16
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.12
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.01
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.97
PLN02785	587	Protein HOTHEAD	96.97
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.96
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.95
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	96.95
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	96.92
KOG2852	380	consensus Possible oxidoreductase [General functio	96.91
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	96.82
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.81
KOG2853	509	consensus Possible oxidoreductase [General functio	96.75
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.74
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.73
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.65
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.64
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	96.64
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.59
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.57
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.53
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.47
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.38
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	96.31
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.3
KOG2960	328	consensus Protein involved in thiamine biosynthesi	96.26
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.24
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.2
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.19
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.17
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	96.17
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.17
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.16
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.13
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.1
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.07
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.04
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.02
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	95.99
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	95.98
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	95.98
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.96
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.94
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.92
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	95.87
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.84
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.82
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.79
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.78
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	95.74
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.69
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.69
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	95.65
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.64
PRK10262	321	thioredoxin reductase; Provisional	95.59
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.59
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.58
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.56
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.53
PRK12831	464	putative oxidoreductase; Provisional	95.48
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.44
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	95.43
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	95.43
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.41
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.37
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	95.36
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.35
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.35
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.29
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.28
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.19
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.12
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.12
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.09
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.04
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.04
PRK12770	352	putative glutamate synthase subunit beta; Provisio	94.98
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.96
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.93
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.88
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.86
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	94.84
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.82
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.82
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.81
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.8
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.78
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.77
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.73
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.72
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.67
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.67
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	94.6
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.6
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.59
PRK04148	134	hypothetical protein; Provisional	94.58
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.55
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.52
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.52
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	94.45
PRK08306	296	dipicolinate synthase subunit A; Reviewed	94.44
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.43
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.4
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.38
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	94.38
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	94.35
PRK11730	715	fadB multifunctional fatty acid oxidation complex	94.32
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.32
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	94.32
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	94.29
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.26
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	94.25
PRK07417	279	arogenate dehydrogenase; Reviewed	94.12
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	94.1
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.08
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	94.07
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	94.03
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.94
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	93.93
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.87
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	93.86
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	93.85
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.85
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	93.8
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	93.8
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.79
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	93.75
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.73
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	93.68
PTZ00082	321	L-lactate dehydrogenase; Provisional	93.67
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.64
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.64
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	93.63
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	93.62
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.61
PRK06223	307	malate dehydrogenase; Reviewed	93.6
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	93.59
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.58
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	93.5
PRK12548	289	shikimate 5-dehydrogenase; Provisional	93.4
PRK12779	944	putative bifunctional glutamate synthase subunit b	93.39
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.38
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.38
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	93.37
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.36
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	93.32
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	93.31
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	93.28
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	93.2
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	93.12
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	93.12
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	93.12
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	93.01
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.01
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	92.99
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	92.98
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	92.96
PRK05562	223	precorrin-2 dehydrogenase; Provisional	92.95
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	92.94
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	92.89
KOG2755	334	consensus Oxidoreductase [General function predict	92.88
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	92.86
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	92.86
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	92.84
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	92.84
PRK09496	453	trkA potassium transporter peripheral membrane com	92.79
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.77
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	92.71
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	92.68
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	92.67
PLN02353	473	probable UDP-glucose 6-dehydrogenase	92.65
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	92.59
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	92.53
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	92.52
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	92.48
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	92.43
PLN02494	477	adenosylhomocysteinase	92.35
PRK09496	453	trkA potassium transporter peripheral membrane com	92.33
PRK08017	256	oxidoreductase; Provisional	92.3
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	92.3
PTZ00117	319	malate dehydrogenase; Provisional	92.3
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	92.29
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	92.29
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	92.28
PRK10669	558	putative cation:proton antiport protein; Provision	92.27
PRK08328	231	hypothetical protein; Provisional	92.22
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	92.18
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	92.1
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	92.07
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	92.01

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.78  E-value=4.7e-19  Score=146.85  Aligned_cols=114  Identities=26%  Similarity=0.410  Sum_probs=100.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhcC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLLG  144 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~  144 (189)
                      +|+|||+|++||+||+.|+..|++|+||||+ ..+|||+.+++.+...  ||+|++||...++.|.+.++.|.+++++..
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg-~GvGGRlAtRRl~~g~--~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~   79 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKG-RGVGGRLATRRLDGGR--FDHGAQYFKPRDELFLRAVEALRDDGLVDV   79 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcC-CCcccchheeccCCcc--ccccceeecCCchHHHHHHHHHHhCCceee
Confidence            6999999999999999999999999999999 9999999999987654  999999999999999999999999988872


Q ss_pred             c---------------------------hHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557          145 Y---------------------------SKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK  184 (189)
Q Consensus       145 ~---------------------------~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~  184 (189)
                      |                           +.+++.+..   +.+|+++++|+.+.+.++.|+|+++++
T Consensus        80 W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAt---dL~V~~~~rVt~v~~~~~~W~l~~~~g  143 (331)
T COG3380          80 WTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLAT---DLTVVLETRVTEVARTDNDWTLHTDDG  143 (331)
T ss_pred             ccccccccccCCCCCCCCCCccccCcchHHHHHHHhc---cchhhhhhhhhhheecCCeeEEEecCC
Confidence            1                           223444444   789999999999999999999998544

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.45  E-value=2.6e-13  Score=130.41  Aligned_cols=100  Identities=25%  Similarity=0.287  Sum_probs=83.5

Q ss_pred             ccceeecccccCCCCCCCCCCCCCCcCccccCCCCcchhhHhhhhhhhccccc-----cCC--CCCCCCEEEECCCHHHH
Q 041557            4 VTSTIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTF-----TAP--ISSNPHVKIIGGGMAVL   76 (189)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~v~IiG~G~~Gl   76 (189)
                      +|-+++...-+.|...+..|+|||+.+|+|+...+++.++.+++.+....+..     ..+  +...++|+|||||++||
T Consensus       473 ~A~~~I~~~nPlP~icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGL  552 (1019)
T PRK09853        473 EALELIYQRNALPAITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGL  552 (1019)
T ss_pred             HHHHHHHHhCChhhHhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHH
Confidence            35566777778888889999999999999998888999999999887654321     112  24578999999999999


Q ss_pred             HHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           77 ACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        77 ~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ++|+.|+++|++|+|||+. +.+||++.
T Consensus       553 sAA~~Lar~G~~VtV~Ek~-~~~GG~lr  579 (1019)
T PRK09853        553 AAAYFLARAGHPVTVFERE-ENAGGVVK  579 (1019)
T ss_pred             HHHHHHHHcCCeEEEEecc-cccCccee
Confidence            9999999999999999997 88999874

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.44  E-value=1.2e-13  Score=132.91  Aligned_cols=100  Identities=22%  Similarity=0.229  Sum_probs=83.7

Q ss_pred             ccceeecccccCCCCCCCCCCCCCCcCccccCCCCcchhhHhhhhhhhccccc-----c--CCCCCCCCEEEECCCHHHH
Q 041557            4 VTSTIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTF-----T--APISSNPHVKIIGGGMAVL   76 (189)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~v~IiG~G~~Gl   76 (189)
                      +|-++|...-+.|...+..|.|||+.+|+|+...+++.++.+++.+....+..     .  .+....++|+|||||++||
T Consensus       471 ~A~~vi~~~nPlp~icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGL  550 (1012)
T TIGR03315       471 EALEVIYDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGL  550 (1012)
T ss_pred             HHHHHHHHhCChhhHhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHH
Confidence            45667777788888899999999999999998889999999999887654321     1  1123468999999999999


Q ss_pred             HHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           77 ACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        77 ~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      +||+.|+++|++|+|||+. +.+||++.
T Consensus       551 SAA~~LAr~G~~VTV~Ek~-~~lGG~l~  577 (1012)
T TIGR03315       551 SAGYFLARAGHPVTVFEKK-EKPGGVVK  577 (1012)
T ss_pred             HHHHHHHHCCCeEEEEecc-cccCceee
Confidence            9999999999999999997 88999864

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.42  E-value=2.5e-13  Score=131.54  Aligned_cols=100  Identities=20%  Similarity=0.124  Sum_probs=83.0

Q ss_pred             ccceeecccccCCCCCCCCCCC--CCCcCccccCCCCcchhhHhhhhhhhccc----cccCCCCCCCCEEEECCCHHHHH
Q 041557            4 VTSTIIKATSSQPKTNSTNAQK--PTCRNCRRGSSYGSPRRSALKKTFTQKQF----TFTAPISSNPHVKIIGGGMAVLA   77 (189)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~--p~~~~c~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~IiG~G~~Gl~   77 (189)
                      .|-.++..+.+-|...+..|++  ||+.+|+|+....++.+..++++......    .....+...++|+||||||+||+
T Consensus       365 ~A~~~i~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLs  444 (1006)
T PRK12775        365 GALEVIYEASIFPSICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLA  444 (1006)
T ss_pred             HHHHHHHHhCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHH
Confidence            4566777888889999999998  99999999988889998888888765432    11111235789999999999999


Q ss_pred             HHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           78 CALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        78 ~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      +|++|+++|++|+|||+. +.+||.+.
T Consensus       445 aA~~La~~G~~VtV~E~~-~~~GG~l~  470 (1006)
T PRK12775        445 AAADLVKYGVDVTVYEAL-HVVGGVLQ  470 (1006)
T ss_pred             HHHHHHHcCCcEEEEecC-CCCcceee
Confidence            999999999999999997 88998864

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.42  E-value=3.1e-13  Score=130.14  Aligned_cols=98  Identities=18%  Similarity=0.274  Sum_probs=78.8

Q ss_pred             ccceeecccccCCCCCCCCCCC--CCCcCccccCCCCcchhhHhhhhhhhccc--------ccc---C--CCCCCCCEEE
Q 041557            4 VTSTIIKATSSQPKTNSTNAQK--PTCRNCRRGSSYGSPRRSALKKTFTQKQF--------TFT---A--PISSNPHVKI   68 (189)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~--p~~~~c~r~~~~~~~~~~~~~~~~~~~~~--------~~~---~--~~~~~~~v~I   68 (189)
                      +|-++|..+.+-|...+..|++  ||+.+|+++.  .++.+..++++......        .+.   .  .+...++|+|
T Consensus       234 ~A~~~i~~~np~p~~~GrVCp~~~~CE~~C~~~~--~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaV  311 (944)
T PRK12779        234 EALELIESCNPLPNVTGRVCPQELQCQGVCTHTK--RPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAV  311 (944)
T ss_pred             HHHHHHHHhCChhHHhcCcCCCccCHHHhccCCC--cCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEE
Confidence            4667788888999999999999  6999999984  47777777776554311        111   1  1345789999


Q ss_pred             ECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           69 IGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        69 iG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ||||||||+||+.|+++|++|+|||+. +.+||.+.
T Consensus       312 IGsGPAGLsaA~~Lar~G~~VtVfE~~-~~~GG~l~  346 (944)
T PRK12779        312 VGSGPSGLINAYLLAVEGFPVTVFEAF-HDLGGVLR  346 (944)
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEEeeC-CCCCceEE
Confidence            999999999999999999999999997 89999874

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.40  E-value=1.1e-12  Score=88.05  Aligned_cols=65  Identities=31%  Similarity=0.416  Sum_probs=53.4

Q ss_pred             EECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeC--CchhHHHHHH
Q 041557           68 IIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVN--DSRFGELVDV  135 (189)
Q Consensus        68 IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~l~~  135 (189)
                      |||||++||++|+.|+++|++|+|||+. +.+||++.+...+.  ..+|.+++++...  .+.+.+++++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~-~~~GG~~~~~~~~g--~~~d~g~~~~~~~~~~~~~~~l~~~   67 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKN-DRLGGRARSFRIPG--YRFDLGAHYFFPPDDYPNLFRLLRE   67 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESS-SSSSGGGCEEEETT--EEEETSS-SEEETTSCHHHHHHHHT
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecC-cccCcceeEEEECC--EEEeeccEEEeCCCCchHHHHHHcC
Confidence            8999999999999999999999999998 99999999887755  4699999998863  4555555543

...

>PRK12831 putative oxidoreductase; Provisional

Probab=99.40  E-value=3.3e-13  Score=121.06  Aligned_cols=100  Identities=19%  Similarity=0.223  Sum_probs=81.9

Q ss_pred             ccceeecccccCCCCCCCCCCC--CCCcCccccCCCCcchhhHhhhhhhhccc----cccC-CCCCCCCEEEECCCHHHH
Q 041557            4 VTSTIIKATSSQPKTNSTNAQK--PTCRNCRRGSSYGSPRRSALKKTFTQKQF----TFTA-PISSNPHVKIIGGGMAVL   76 (189)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~--p~~~~c~r~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~v~IiG~G~~Gl   76 (189)
                      +|-+++....+.|..-+..|++  ||+.+|+|+....++.+..++++......    .... .+...++|+|||||++||
T Consensus        74 ~a~~~~~~~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl  153 (464)
T PRK12831         74 EAAKIIAKYNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGL  153 (464)
T ss_pred             HHHHHHHHhCCchhhhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHH
Confidence            3556666777888888999997  99999999988889988888888776433    2211 234678999999999999


Q ss_pred             HHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           77 ACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        77 ~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ++|+.|+++|++|+|||+. +.+||.+.
T Consensus       154 ~aA~~l~~~G~~V~v~e~~-~~~GG~l~  180 (464)
T PRK12831        154 TCAGDLAKMGYDVTIFEAL-HEPGGVLV  180 (464)
T ss_pred             HHHHHHHhCCCeEEEEecC-CCCCCeee
Confidence            9999999999999999997 88888763

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.39  E-value=3.9e-13  Score=120.70  Aligned_cols=99  Identities=20%  Similarity=0.324  Sum_probs=82.4

Q ss_pred             ccceeecccccCCCCCCCCCCCCCCcCccccCCCCcchhhHhhhhhhhccccc-----c-CCCCCCCCEEEECCCHHHHH
Q 041557            4 VTSTIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTF-----T-APISSNPHVKIIGGGMAVLA   77 (189)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~v~IiG~G~~Gl~   77 (189)
                      +|-+++....+.|..-+..|++||+..|+|+...+++.+..++++........     . +++...++|+|||+|++||+
T Consensus        78 ~a~~~~~~~~p~~~~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~  157 (471)
T PRK12810         78 EAAERLHQTNNFPEFTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLA  157 (471)
T ss_pred             HHHHHHHHhCChhHHhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHH
Confidence            45667777788888899999999999999999889999999998877544321     1 12335689999999999999


Q ss_pred             HHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           78 CALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        78 ~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      +|..|+++|++|+|||+. +.+||.+
T Consensus       158 aA~~l~~~G~~V~vie~~-~~~GG~l  182 (471)
T PRK12810        158 AADQLARAGHKVTVFERA-DRIGGLL  182 (471)
T ss_pred             HHHHHHhCCCcEEEEecC-CCCCcee
Confidence            999999999999999997 8888864

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.38  E-value=1e-12  Score=122.38  Aligned_cols=100  Identities=24%  Similarity=0.391  Sum_probs=82.5

Q ss_pred             ccceeecccccCCCCCCCCCC--CCCCcCccccCCCCcchhhHhhhhhhhcccc----ccC--CCCCCCCEEEECCCHHH
Q 041557            4 VTSTIIKATSSQPKTNSTNAQ--KPTCRNCRRGSSYGSPRRSALKKTFTQKQFT----FTA--PISSNPHVKIIGGGMAV   75 (189)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~v~IiG~G~~G   75 (189)
                      +|.+++..+.+.|...+..|+  +||+.+|+|+...+++.+..++++.......    ...  .+...++|+|||+|++|
T Consensus       260 ~A~~~~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAG  339 (654)
T PRK12769        260 AAVELSHQTNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAG  339 (654)
T ss_pred             HHHHHHHHhCCchhHhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHH
Confidence            466778888899999999998  5899999999888888888888877654432    111  12357899999999999


Q ss_pred             HHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           76 LACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        76 l~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      |++|+.|++.|++|+|||+. +.+||.+.
T Consensus       340 LsaA~~L~~~G~~V~V~E~~-~~~GG~l~  367 (654)
T PRK12769        340 LACADVLARNGVAVTVYDRH-PEIGGLLT  367 (654)
T ss_pred             HHHHHHHHHCCCeEEEEecC-CCCCceee
Confidence            99999999999999999997 89999864

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.36  E-value=2.2e-12  Score=115.84  Aligned_cols=100  Identities=23%  Similarity=0.381  Sum_probs=81.4

Q ss_pred             ccceeecccccCCCCCCCCCC--CCCCcCccccCCCCcchhhHhhhhhhhcccc----ccC--CCCCCCCEEEECCCHHH
Q 041557            4 VTSTIIKATSSQPKTNSTNAQ--KPTCRNCRRGSSYGSPRRSALKKTFTQKQFT----FTA--PISSNPHVKIIGGGMAV   75 (189)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~v~IiG~G~~G   75 (189)
                      +|-+++...-+.|..-+..|+  +||+.+|+|+...+++.+..++++.......    ...  .+...++|+|||+|++|
T Consensus        74 ~a~~~~~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaG  153 (467)
T TIGR01318        74 EAAELSHQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAG  153 (467)
T ss_pred             HHHHHHHHhCCchHhhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHH
Confidence            355667777788888889998  6999999999888899988888877654332    111  12357899999999999


Q ss_pred             HHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           76 LACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        76 l~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      |++|..|+++|++|+|||+. +.+||.+.
T Consensus       154 l~aA~~l~~~G~~V~i~e~~-~~~gG~l~  181 (467)
T TIGR01318       154 LACADILARAGVQVVVFDRH-PEIGGLLT  181 (467)
T ss_pred             HHHHHHHHHcCCeEEEEecC-CCCCceee
Confidence            99999999999999999997 88999764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.36  E-value=1.8e-12  Score=120.48  Aligned_cols=100  Identities=24%  Similarity=0.372  Sum_probs=82.8

Q ss_pred             ccceeecccccCCCCCCCCCC--CCCCcCccccCCCCcchhhHhhhhhhhccc----cccC-C-CCCCCCEEEECCCHHH
Q 041557            4 VTSTIIKATSSQPKTNSTNAQ--KPTCRNCRRGSSYGSPRRSALKKTFTQKQF----TFTA-P-ISSNPHVKIIGGGMAV   75 (189)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~----~~~~-~-~~~~~~v~IiG~G~~G   75 (189)
                      +|-+++..+.+.|...+..++  +||+.+|+|+...+++.+..++++......    .... + +...++|+|||+|++|
T Consensus       243 ~a~~~~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaG  322 (639)
T PRK12809        243 EAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAG  322 (639)
T ss_pred             HHHHHHHHhCCcchhhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHH
Confidence            456677788889999999997  699999999988889998888887765443    2211 1 2357899999999999


Q ss_pred             HHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           76 LACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        76 l~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      |++|+.|+++|++|+|||+. +.+||.+.
T Consensus       323 l~aA~~L~~~G~~Vtv~e~~-~~~GG~l~  350 (639)
T PRK12809        323 LGCADILARAGVQVDVFDRH-PEIGGMLT  350 (639)
T ss_pred             HHHHHHHHHcCCcEEEEeCC-CCCCCeee
Confidence            99999999999999999997 88998864

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.34  E-value=6.4e-12  Score=109.41  Aligned_cols=123  Identities=20%  Similarity=0.183  Sum_probs=78.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeec---ceeeEee---CCchhHHHHHH
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDH---ATQFFTV---NDSRFGELVDV  135 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~---g~~~~~~---~~~~~~~~l~~  135 (189)
                      ..++|+|||||++||+||..++++|++|+|||+. +.+|-.+...--  ..+++-+   ...|++.   ....+...+.+
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~-~k~GrKil~sGg--GrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~   78 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKG-PKLGRKILMSGG--GRCNFTNSEAPDEFLSRNPGNGHFLKSALAR   78 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecC-ccccceeEecCC--CCccccccccHHHHHHhCCCcchHHHHHHHh
Confidence            3578999999999999999999999999999997 887654321100  0000100   1111111   11122333444


Q ss_pred             Hhhhhhhc--------------Cc--------hHHHHHHhc--cCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          136 CWKVVLLL--------------GY--------SKSQNLNIF--QTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       136 ~~~~~~~~--------------~~--------~~~~~~l~~--~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                      |...+++.              |+        +++++.+..  ...||+++++++|.++++.+.+|.|++.+++.+
T Consensus        79 ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i  154 (408)
T COG2081          79 FTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETV  154 (408)
T ss_pred             CCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEE
Confidence            44444433              11        234555443  236899999999999999999999999988644

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.30  E-value=3e-12  Score=114.32  Aligned_cols=100  Identities=26%  Similarity=0.267  Sum_probs=80.6

Q ss_pred             ccceeecccccCCCCCCCCCCC--CCCcCccccC----CCCcchhhHhhhhhhhcccc----cc--CCCCCCCCEEEECC
Q 041557            4 VTSTIIKATSSQPKTNSTNAQK--PTCRNCRRGS----SYGSPRRSALKKTFTQKQFT----FT--APISSNPHVKIIGG   71 (189)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~--p~~~~c~r~~----~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~v~IiG~   71 (189)
                      +|.+++....+.|..-+..|.+  ||+..|+++.    ..+++.+..++++.......    ..  +.+...++|+|||+
T Consensus        62 ~A~~~~~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~  141 (449)
T TIGR01316        62 GAVDIIKTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGA  141 (449)
T ss_pred             HHHHHHHHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECc
Confidence            4566777778888888999999  9999999876    67888888888877643321    11  12345789999999


Q ss_pred             CHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           72 GMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        72 G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      |++||++|+.|+++|++|+|||+. +.+||.+.
T Consensus       142 G~aGl~aA~~l~~~G~~V~vie~~-~~~GG~l~  173 (449)
T TIGR01316       142 GPAGLACASELAKAGHSVTVFEAL-HKPGGVVT  173 (449)
T ss_pred             CHHHHHHHHHHHHCCCcEEEEecC-CCCCcEee
Confidence            999999999999999999999997 88888653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.30  E-value=7.1e-12  Score=99.24  Aligned_cols=117  Identities=15%  Similarity=0.065  Sum_probs=62.4

Q ss_pred             EEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCCCcCceeeeeCCcceeeecce--eeEeeCCc---hhHHHHHHHhhhh
Q 041557           67 KIIGGGMAVLACALRLDKRGVK-SNVFDMGNPDLEGRMGTRMIGRQPLIFDHAT--QFFTVNDS---RFGELVDVCWKVV  140 (189)
Q Consensus        67 ~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~--~~~~~~~~---~~~~~l~~~~~~~  140 (189)
                      +|||||++||++|..|.++|.+ |+|||++ +.+||.|.........  +....  ..+...+.   .+... ..+....
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~-~~~Gg~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   76 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERN-DRPGGVWRRYYSYTRL--HSPSFFSSDFGLPDFESFSFDDS-PEWRWPH   76 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESS-SSSTTHHHCH-TTTT---BSSSCCTGGSS--CCCHSCHHHH-HHHHHSB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCC-CCCCCeeEEeCCCCcc--ccCccccccccCCcccccccccC-CCCCCCc
Confidence            6999999999999999999999 9999998 9999998743211100  00000  00000000   01000 0110000


Q ss_pred             hhcCchHHHHHHhc--cCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          141 LLLGYSKSQNLNIF--QTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       141 ~~~~~~~~~~~l~~--~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                      ......++.+++..  ...+++++++++|+++++.+++|.|++.++..+
T Consensus        77 ~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~  125 (203)
T PF13738_consen   77 DFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTI  125 (203)
T ss_dssp             SSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EE
T ss_pred             ccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEeccee
Confidence            00011222333322  113567999999999999999999999887444

...

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.27  E-value=6.2e-12  Score=117.14  Aligned_cols=100  Identities=27%  Similarity=0.336  Sum_probs=81.5

Q ss_pred             ccceeecccccCCCCCCCCCCCCCCcCccccCCCCcchhhHhhhhhhhccc----ccc--CCCCCCCCEEEECCCHHHHH
Q 041557            4 VTSTIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQF----TFT--APISSNPHVKIIGGGMAVLA   77 (189)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~v~IiG~G~~Gl~   77 (189)
                      +|-.++...-+.|..-+..|++||+..|+|+...+++.+..++++......    .+.  .++...++|+|||+|++||+
T Consensus       128 ~a~~~~~~~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~  207 (652)
T PRK12814        128 EAIRIIKETIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLT  207 (652)
T ss_pred             HHHHHHHhhCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHH
Confidence            456677778888999999999999999999887788888888887664322    111  12345689999999999999


Q ss_pred             HHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           78 CALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        78 ~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      +|+.|+++|++|+|||+. +.+||.+.
T Consensus       208 aA~~La~~G~~Vtv~e~~-~~~GG~l~  233 (652)
T PRK12814        208 AAYYLLRKGHDVTIFDAN-EQAGGMMR  233 (652)
T ss_pred             HHHHHHHCCCcEEEEecC-CCCCceee
Confidence            999999999999999997 88888764

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.26  E-value=5.5e-12  Score=113.78  Aligned_cols=99  Identities=21%  Similarity=0.292  Sum_probs=80.0

Q ss_pred             ccceeecccccCCCCCCCCCCCCCCcCccccCCCCcchhhHhhhhhhhcccc----ccC--CCCCCCCEEEECCCHHHHH
Q 041557            4 VTSTIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFT----FTA--PISSNPHVKIIGGGMAVLA   77 (189)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~v~IiG~G~~Gl~   77 (189)
                      +|-.++..+.+.|...+..|++||+.+|+|+...+++.+..++++.......    ...  .+...++|+|||+|++|++
T Consensus        78 ~a~~~~~~~~p~p~~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~  157 (485)
T TIGR01317        78 EALDRLHATNNFPEFTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLA  157 (485)
T ss_pred             HHHHHHHhhCCchhHHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHH
Confidence            3556667777888888999999999999999888888888888887544322    111  1234579999999999999


Q ss_pred             HHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           78 CALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        78 ~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      +|..|+++|++|+|||+. +.+||.+
T Consensus       158 aA~~L~~~g~~V~v~e~~-~~~gG~l  182 (485)
T TIGR01317       158 AADQLNRAGHTVTVFERE-DRCGGLL  182 (485)
T ss_pred             HHHHHHHcCCeEEEEecC-CCCCcee
Confidence            999999999999999997 8888764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.26  E-value=2.4e-11  Score=107.63  Aligned_cols=117  Identities=15%  Similarity=0.183  Sum_probs=61.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc--------CceeeeeCCcceeeecceeeEee--CCc-hhHHH
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG--------RMGTRMIGRQPLIFDHATQFFTV--NDS-RFGEL  132 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg--------~~~~~~~~~~~~~~~~g~~~~~~--~~~-~~~~~  132 (189)
                      +||+|||||+|||+||+.|++.|.+|+|+|++ +.+|-        ++.-.+....      ...|+..  .++ .+...
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~-~~~gkKil~tG~GrCN~tn~~~~------~~~~~~~~~~~~~f~~~~   73 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERN-KRVGKKILITGNGRCNLTNLNID------PSEFLSGYGRNPKFLKSA   73 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SS-SSS-HHHHHCGGGT-EEEETTSS------GGGEECS-TBTTTCTHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC-cccccceeecCCCCccccccccc------hhhHhhhcccchHHHHHH
Confidence            58999999999999999999999999999998 88753        4332221100      0112211  122 22223


Q ss_pred             HHHHhhhhhhc--------------C----c----hHHHHHHhc--cCCCcEEEeCceeEEEEEeCCe-EEEEeCCeeee
Q 041557          133 VDVCWKVVLLL--------------G----Y----SKSQNLNIF--QTSKVNVVRTCWISNLEPFNGM-WYLGENGKTAW  187 (189)
Q Consensus       133 l~~~~~~~~~~--------------~----~----~~~~~~l~~--~~~~v~v~~~t~V~~i~~~~~~-w~l~~~~~~~~  187 (189)
                      +..|...+++.              +    .    .++.+.|..  ...+++|+++++|.+|+.++++ |.|.+++...|
T Consensus        74 l~~f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~  153 (409)
T PF03486_consen   74 LKRFSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEY  153 (409)
T ss_dssp             HHHS-HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEE
T ss_pred             HhcCCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccc
Confidence            33332222221              1    1    233444433  2358999999999999998777 99998444433

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.23  E-value=1.5e-11  Score=112.66  Aligned_cols=100  Identities=25%  Similarity=0.420  Sum_probs=80.2

Q ss_pred             ccceeecccccCCCCCCCCCCCCCCcCccccCCCCcchhhHhhhhhhhcc----ccccCC-CCCCCCEEEECCCHHHHHH
Q 041557            4 VTSTIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQ----FTFTAP-ISSNPHVKIIGGGMAVLAC   78 (189)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~v~IiG~G~~Gl~~   78 (189)
                      +|-+++...-+.|...+..|.+||+.+|+|+..+.++....+++......    +....+ ....++|+|||+|++||++
T Consensus        73 ~a~~~~~~~np~~~~~grvc~~~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~a  152 (564)
T PRK12771         73 YAWRRLTKDNPFPAVMGRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSA  152 (564)
T ss_pred             HHHHHHHHhCCcchHhhCcCCchhHHhccCCCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHH
Confidence            35556666778888889999999999999998888888888888654322    222221 3467899999999999999


Q ss_pred             HHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           79 ALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        79 A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      |+.|+++|++|+|||+. +.+||.+.
T Consensus       153 A~~l~~~G~~V~v~e~~-~~~GG~l~  177 (564)
T PRK12771        153 AYHLRRMGHAVTIFEAG-PKLGGMMR  177 (564)
T ss_pred             HHHHHHCCCeEEEEecC-CCCCCeee
Confidence            99999999999999997 88888653

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.22  E-value=1.3e-11  Score=110.22  Aligned_cols=99  Identities=20%  Similarity=0.271  Sum_probs=78.9

Q ss_pred             ccceeecccccCCCCCCCCCCCC--CCcCccccCCCCcchhhHhhhhhhhccccc-----cCCCCCCCCEEEECCCHHHH
Q 041557            4 VTSTIIKATSSQPKTNSTNAQKP--TCRNCRRGSSYGSPRRSALKKTFTQKQFTF-----TAPISSNPHVKIIGGGMAVL   76 (189)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p--~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~IiG~G~~Gl   76 (189)
                      +|-+++....+-|...+..|.+|  |+..|+++....++.+..+++......+..     ..++...++|+|||||++||
T Consensus        74 ~a~~~~~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl  153 (457)
T PRK11749         74 GAAETILETNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGL  153 (457)
T ss_pred             HHHHHHHHhCCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHH
Confidence            35566777788888899999999  999999987777777777777655433221     12234568999999999999


Q ss_pred             HHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           77 ACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        77 ~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ++|..|+++|++|+|||+. +.+||.+
T Consensus       154 ~aA~~l~~~g~~V~lie~~-~~~gG~l  179 (457)
T PRK11749        154 TAAHRLARKGYDVTIFEAR-DKAGGLL  179 (457)
T ss_pred             HHHHHHHhCCCeEEEEccC-CCCCcEe
Confidence            9999999999999999997 8888764

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.21  E-value=4.4e-11  Score=107.14  Aligned_cols=100  Identities=22%  Similarity=0.189  Sum_probs=80.2

Q ss_pred             cceeecccccCCCCCCCCCCCC--CCcCccccCCCCcchhhHhhhhhhhccccc----c-CC-CCCCCCEEEECCCHHHH
Q 041557            5 TSTIIKATSSQPKTNSTNAQKP--TCRNCRRGSSYGSPRRSALKKTFTQKQFTF----T-AP-ISSNPHVKIIGGGMAVL   76 (189)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~p--~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~----~-~~-~~~~~~v~IiG~G~~Gl   76 (189)
                      |..+|..+-..|...+..|..|  |+.+|.+.....++.+..++.+....++..    . .+ ....++|+|||+||+||
T Consensus        57 a~~~i~~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl  136 (457)
T COG0493          57 AIKLIHKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGL  136 (457)
T ss_pred             HHHHHHHhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHh
Confidence            4566777778888889999999  999999987677777777766655544331    1 12 33568999999999999


Q ss_pred             HHHHHHHHcCCeEEEEecCCCCCCcCcee
Q 041557           77 ACALRLDKRGVKSNVFDMGNPDLEGRMGT  105 (189)
Q Consensus        77 ~~A~~l~~~g~~v~v~e~~~~~~gg~~~~  105 (189)
                      ++|..|++.|+.|+|||+. +.+||++..
T Consensus       137 ~~a~~L~~~G~~Vtv~e~~-~~~GGll~y  164 (457)
T COG0493         137 AAADDLSRAGHDVTVFERV-ALDGGLLLY  164 (457)
T ss_pred             hhHHHHHhCCCeEEEeCCc-CCCceeEEe
Confidence            9999999999999999997 999999743

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.20  E-value=2.1e-11  Score=115.16  Aligned_cols=100  Identities=23%  Similarity=0.304  Sum_probs=80.7

Q ss_pred             ccceeecccccCCCCCCCCCCC--CCCcCccccCCC-CcchhhHhhhhhhhcccc---ccCC---CCCCCCEEEECCCHH
Q 041557            4 VTSTIIKATSSQPKTNSTNAQK--PTCRNCRRGSSY-GSPRRSALKKTFTQKQFT---FTAP---ISSNPHVKIIGGGMA   74 (189)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~--p~~~~c~r~~~~-~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~v~IiG~G~~   74 (189)
                      +|-+++..+.+.|...+..|++  ||+..|++.... .++.+..+++...+....   ...|   +...++|+|||||++
T Consensus       363 ~a~~~~~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpA  442 (752)
T PRK12778        363 EAAKILKETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPA  442 (752)
T ss_pred             HHHHHHHhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHH
Confidence            4556777788888999999986  999999999877 788888888876643221   1111   345789999999999


Q ss_pred             HHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           75 VLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        75 Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ||++|+.|+++|++|+|||+. +.+||.+.
T Consensus       443 Gl~aA~~l~~~G~~V~v~e~~-~~~GG~l~  471 (752)
T PRK12778        443 GLSFAGDLAKRGYDVTVFEAL-HEIGGVLK  471 (752)
T ss_pred             HHHHHHHHHHCCCeEEEEecC-CCCCCeee
Confidence            999999999999999999997 88898864

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.19  E-value=5.2e-11  Score=106.92  Aligned_cols=44  Identities=30%  Similarity=0.392  Sum_probs=40.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCcee
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT  105 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~  105 (189)
                      ...++|+|||||++||++|..|.+.|++|+|||++ ..+||.|..
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~-~~vGG~W~~   51 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFERE-KQVGGLWVY   51 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecC-CCCcceeec
Confidence            34688999999999999999999999999999998 999999854

>PRK07208 hypothetical protein; Provisional

Probab=99.18  E-value=6.3e-11  Score=105.98  Aligned_cols=72  Identities=28%  Similarity=0.294  Sum_probs=56.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHH
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDV  135 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~  135 (189)
                      +..++|+|||||++||++|+.|+++|++|+|+|+. +.+||++.+...++  +.+|.|.+++...++.+.+++++
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~-~~~GG~~~s~~~~g--~~~d~G~h~~~~~~~~~~~l~~~   73 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEAD-PVVGGISRTVTYKG--NRFDIGGHRFFSKSPEVMDLWNE   73 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCceeeeeccCC--ceEccCCceeccCCHHHHHHHHH
Confidence            35678999999999999999999999999999997 99999988766544  34777877666555544444333

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.17  E-value=4.1e-11  Score=105.70  Aligned_cols=63  Identities=25%  Similarity=0.423  Sum_probs=51.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchh
Q 041557           64 PHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRF  129 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~  129 (189)
                      ++|+|||||++||+||+.|++.|  ++|+|||+. +.+||++.+....+  ..+|.|++++....+.+
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~-~~~GGr~~t~~~~g--~~~d~G~~~~~~~~~~~   65 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEAS-DRLGGKIQTVRKDG--FPIELGPESFLARKPSA   65 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcC-CCCcceEEEEeeCC--eEEecChHHhcCCcHHH
Confidence            36999999999999999999988  899999998 99999999877654  35788887555444333

>PLN02268 probable polyamine oxidase

Probab=99.15  E-value=1e-10  Score=103.48  Aligned_cols=58  Identities=26%  Similarity=0.385  Sum_probs=51.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEee
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTV  124 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~  124 (189)
                      ++|+|||||++||++|+.|.+.|++|+|+|+. +.+||++.+....+  ..+|.|+++++.
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~-~r~GGri~t~~~~g--~~~d~G~~~i~~   58 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESR-DRIGGRVHTDYSFG--FPVDMGASWLHG   58 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCceeeecCcCC--cccCCCCeeEec
Confidence            47999999999999999999999999999997 99999998865544  358999998874

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.15  E-value=7.5e-11  Score=104.75  Aligned_cols=67  Identities=25%  Similarity=0.397  Sum_probs=56.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHH
Q 041557           64 PHVKIIGGGMAVLACALRLDKR----GVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELV  133 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~----g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l  133 (189)
                      ++|+|||||++||++|+.|+++    |++|+|||+. +.+||++.+...++  ..+|.|++++...++.+.+++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~-~r~GG~~~t~~~~g--~~~e~G~~~~~~~~~~~~~l~   73 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEAS-DRVGGKIQTVKEDG--YLIERGPDSFLERKKSAPDLV   73 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcC-CcCcceEEEEeeCC--EEEecCccccccCChHHHHHH
Confidence            5899999999999999999999    9999999997 99999999877654  357888887776655444443

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.11  E-value=6.2e-11  Score=108.14  Aligned_cols=41  Identities=29%  Similarity=0.429  Sum_probs=35.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCcee
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT  105 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~  105 (189)
                      ++|+|||||++||++|..|.+.|++|++||+. +.+||.|..
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~-~~iGG~W~~   42 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKS-DDIGGLWRY   42 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESS-SSSSGGGCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecC-CCCCccCee
Confidence            68999999999999999999999999999998 999999963

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK07233 hypothetical protein; Provisional

Probab=99.11  E-value=1.2e-10  Score=102.00  Aligned_cols=55  Identities=33%  Similarity=0.508  Sum_probs=45.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeE
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFF  122 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~  122 (189)
                      +|+|||||++||++|+.|+++|++|+|+|+. +.+||++.+....+.  .+|.|.+++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~-~~~GG~~~s~~~~g~--~~d~g~~~~   55 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEAD-DQLGGLAASFEFGGL--PIERFYHHI   55 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeC-CCCCCceeeeccCCc--chhhhhhhh
Confidence            5899999999999999999999999999998 999999877665432  345554444

>PLN02576 protoporphyrinogen oxidase

Probab=99.11  E-value=1.5e-10  Score=103.95  Aligned_cols=63  Identities=24%  Similarity=0.396  Sum_probs=52.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDS  127 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (189)
                      ...+|+|||||++||++|+.|+++ |++|+|||+. +.+||++.+.+.++  +.+|.|++++...++
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~-~rvGGr~~t~~~~g--~~~d~G~~~~~~~~~   74 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEAR-DRVGGNITSVSEDG--FIWEEGPNSFQPSDP   74 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecC-CCCCCceeEeccCC--eEEecCCchhccCcH
Confidence            346899999999999999999999 9999999998 99999999877654  357777776654333

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.10  E-value=1.3e-10  Score=103.80  Aligned_cols=117  Identities=17%  Similarity=0.134  Sum_probs=71.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCC------c-ceeeecceeeEeeCCchhHHHHH
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGR------Q-PLIFDHATQFFTVNDSRFGELVD  134 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~------~-~~~~~~g~~~~~~~~~~~~~~l~  134 (189)
                      ..++|+|||||+|||++|..|.+.|++|++|||. +.+||.|.-..-..      + .+..+..-++...++-+|.....
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~-~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~   83 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERT-DDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP   83 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEec-CCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence            4678999999999999999999999999999998 99999986431100      0 01111111112222222221100


Q ss_pred             HHhhhhhhcCchHHHHHHhc----cCCCcEEEeCceeEEEEEeC-CeEEEEeCCe
Q 041557          135 VCWKVVLLLGYSKSQNLNIF----QTSKVNVVRTCWISNLEPFN-GMWYLGENGK  184 (189)
Q Consensus       135 ~~~~~~~~~~~~~~~~~l~~----~~~~v~v~~~t~V~~i~~~~-~~w~l~~~~~  184 (189)
                      ++     .+.+..+.++|..    ......++|+++|..++..+ +.|.|.+.+.
T Consensus        84 ~~-----~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~  133 (448)
T KOG1399|consen   84 RY-----FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDN  133 (448)
T ss_pred             cc-----CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecC
Confidence            00     0000112222221    12245899999999999888 7999977554

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.09  E-value=1.4e-10  Score=103.48  Aligned_cols=67  Identities=19%  Similarity=0.302  Sum_probs=54.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHH
Q 041557           64 PHVKIIGGGMAVLACALRLDKR------GVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELV  133 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~------g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l  133 (189)
                      ++|+|||||++||++|+.|++.      |++|+|+|+. +.+||++.+.+..+  ..+|.|++++....+.+.+++
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~-~r~GGr~~T~~~~g--~~~e~G~~~i~~~~~~~~~l~   74 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKE-EYLGGKIHSVEEKD--FIMESGADSIVARNEHVMPLV   74 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecC-CCccceEEEEeeCC--EEEecCcHHHhcCCHHHHHHH
Confidence            4699999999999999999986      3799999998 99999999987654  357888887765555444443

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.09  E-value=5.4e-10  Score=99.95  Aligned_cols=118  Identities=15%  Similarity=0.140  Sum_probs=71.9

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhH--HHHHHH
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFG--ELVDVC  136 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~l~~~  136 (189)
                      .....+|+|||||++||++|+.|.+.|.. ++||||. ..+||.|...+.+..  ..+....++..+...|.  .....+
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~-~~~Gg~W~~~ry~~l--~~~~p~~~~~~~~~p~~~~~~~~~~   81 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKR-DDVGGTWRYNRYPGL--RLDSPKWLLGFPFLPFRWDEAFAPF   81 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEcc-CCcCCcchhccCCce--EECCchheeccCCCccCCcccCCCc
Confidence            34578999999999999999999999999 9999997 999999876554321  22222222222222221  000000


Q ss_pred             h-hhhhhcCchHHHHHHhccCCCcEEEeCceeEEEEEeC--CeEEEEeCCeee
Q 041557          137 W-KVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFN--GMWYLGENGKTA  186 (189)
Q Consensus       137 ~-~~~~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~--~~w~l~~~~~~~  186 (189)
                      . ...++   .+..+.+..   ...+++++.|+.+.++.  +.|+|++.++..
T Consensus        82 ~~~~~y~---~~~~~~y~~---~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~  128 (443)
T COG2072          82 AEIKDYI---KDYLEKYGL---RFQIRFNTRVEVADWDEDTKRWTVTTSDGGT  128 (443)
T ss_pred             ccHHHHH---HHHHHHcCc---eeEEEcccceEEEEecCCCCeEEEEEcCCCe
Confidence            0 00000   001222222   35777888888777654  479998887664

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.09  E-value=3.3e-10  Score=102.60  Aligned_cols=65  Identities=23%  Similarity=0.229  Sum_probs=55.6

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCC
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVND  126 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~  126 (189)
                      ....++|+|||||++||+||..|.+.|++|+|+|+. +.+|||+.+.+..... ..|.|+++++...
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEAR-dRvGGRI~t~~~~~~~-~vd~Gas~~~g~~   76 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEAR-DRVGGRIYTFKSEGGD-HVDLGASVLTGVY   76 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEecc-CCcCceeEEEecCCCC-eeecCCceecCcC
Confidence            345678999999999999999999999999999996 9999999998776543 4788888887543

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.08  E-value=1.6e-10  Score=110.71  Aligned_cols=89  Identities=11%  Similarity=0.112  Sum_probs=68.2

Q ss_pred             cceeecccccCCCCCC-CCCCCCCCcCccccCCCCcchhhHhhhhhhhc---------------cccc-----c-CCCCC
Q 041557            5 TSTIIKATSSQPKTNS-TNAQKPTCRNCRRGSSYGSPRRSALKKTFTQK---------------QFTF-----T-APISS   62 (189)
Q Consensus         5 ~~~~~~~~~~~~~~~~-~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~---------------~~~~-----~-~~~~~   62 (189)
                      |-+++...-+-|...+ ..|+ ||+.+|+|+ ...++.+..++++....               .+..     . +.+..
T Consensus       305 Al~ii~~~NP~p~~~G~RVCp-~CE~aC~r~-~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~t  382 (1028)
T PRK06567        305 ALAIIVIDNPMVAATGHRICN-DCSKACIYQ-KQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPT  382 (1028)
T ss_pred             HHHHHHHhCCChHhhCCccCc-chHHHhcCC-CCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCC
Confidence            4455666667777777 7897 799999998 67788888888765432               1110     1 11346


Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+||+||++|+.|+++|++|+|||+.
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            789999999999999999999999999999984

>PRK13984 putative oxidoreductase; Provisional

Probab=99.07  E-value=1.6e-10  Score=106.61  Aligned_cols=94  Identities=20%  Similarity=0.181  Sum_probs=72.9

Q ss_pred             ecccccCCCCCCCCCCCCCCcCccccCCCCcchhhHhhhhhhhccc----c---ccCCCCCCCCEEEECCCHHHHHHHHH
Q 041557            9 IKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQF----T---FTAPISSNPHVKIIGGGMAVLACALR   81 (189)
Q Consensus         9 ~~~~~~~~~~~~~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~v~IiG~G~~Gl~~A~~   81 (189)
                      +....+-+..-+..|++||+.+|+|+..+.++.+..++++......    .   ........++|+|||+|++|+++|..
T Consensus       222 ~~~~np~~~~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~  301 (604)
T PRK13984        222 LYKTNPLSMVCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYF  301 (604)
T ss_pred             HHhcCCccchhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHH
Confidence            3335556777788899999999999877777777777766554321    1   11223467889999999999999999


Q ss_pred             HHHcCCeEEEEecCCCCCCcCc
Q 041557           82 LDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        82 l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      |+++|++|+|||+. +.+||.+
T Consensus       302 L~~~G~~v~vie~~-~~~gG~~  322 (604)
T PRK13984        302 LATMGYEVTVYESL-SKPGGVM  322 (604)
T ss_pred             HHHCCCeEEEEecC-CCCCceE
Confidence            99999999999997 8888764

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.05  E-value=3.9e-10  Score=101.84  Aligned_cols=59  Identities=27%  Similarity=0.425  Sum_probs=50.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEe
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFT  123 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~  123 (189)
                      +.+||+|||||+.||++|..|+++|++|+||||. +.+||++.+....+  +.||.|+.++.
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~-~~~GG~a~t~e~~G--f~fd~G~~~~~   60 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKN-DRVGGRARTFELDG--FRFDTGPSWYL   60 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEec-CCCCcceEEEeccc--eEeccCcceee
Confidence            3578999999999999999999999999999997 99999999877763  45777765554

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.04  E-value=2.3e-09  Score=89.22  Aligned_cols=97  Identities=14%  Similarity=0.151  Sum_probs=62.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee-CCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI-GRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      +||+|||||++||++|..|+++|++|+|||+. + +||++..... ..++ .+..     ......+...+.        
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~-~gg~~~~~~~~~~~~-~~~~-----~~~~~~~~~~l~--------   64 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGM-E-PGGQLTTTTEVENYP-GFPE-----GISGPELMEKMK--------   64 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecc-C-CCcceeecccccccC-CCCC-----CCChHHHHHHHH--------
Confidence            47999999999999999999999999999986 4 7887643211 1000 0000     011111211111        


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA  186 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~  186 (189)
                             +.+..  .++++++ ++|++++..++.|.|.+.++..
T Consensus        65 -------~~~~~--~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~   98 (300)
T TIGR01292        65 -------EQAVK--FGAEIIY-EEVIKVDLSDRPFKVKTGDGKE   98 (300)
T ss_pred             -------HHHHH--cCCeEEE-EEEEEEEecCCeeEEEeCCCCE
Confidence                   11111  2789988 8999999888889888766443

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.02  E-value=1.4e-09  Score=104.02  Aligned_cols=89  Identities=22%  Similarity=0.278  Sum_probs=67.9

Q ss_pred             CCCCCCCCCCCCCCcCccccCCCCcch----hhHhhhhhhhccccccCCC--CCCCCEEEECCCHHHHHHHHHHHHcCCe
Q 041557           15 QPKTNSTNAQKPTCRNCRRGSSYGSPR----RSALKKTFTQKQFTFTAPI--SSNPHVKIIGGGMAVLACALRLDKRGVK   88 (189)
Q Consensus        15 ~~~~~~~~~~~p~~~~c~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~v~IiG~G~~Gl~~A~~l~~~g~~   88 (189)
                      -|+=++..|+.||+.+|..+-...++.    +.++-+.+...+|-.+.|+  ...++|+|||+||+||+||-+|-+.|+.
T Consensus      1731 fpeftgrvcpapcegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~ 1810 (2142)
T KOG0399|consen 1731 FPEFTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHT 1810 (2142)
T ss_pred             CccccCccCCCCcCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcE
Confidence            355568889999999998854433332    3344444555555443333  3689999999999999999999999999


Q ss_pred             EEEEecCCCCCCcCce
Q 041557           89 SNVFDMGNPDLEGRMG  104 (189)
Q Consensus        89 v~v~e~~~~~~gg~~~  104 (189)
                      |+|||+. +.+||.+.
T Consensus      1811 v~vyer~-dr~ggll~ 1825 (2142)
T KOG0399|consen 1811 VTVYERS-DRVGGLLM 1825 (2142)
T ss_pred             EEEEEec-CCcCceee
Confidence            9999998 99999874

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.01  E-value=9.8e-10  Score=98.86  Aligned_cols=58  Identities=28%  Similarity=0.347  Sum_probs=50.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEee
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTV  124 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~  124 (189)
                      +||+|||||++||++|..|+++|++|+|||++ +.+||++.+....+  +.||.|++++..
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~-~~~GG~~~t~~~~G--~~fD~G~~~~~~   59 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQH-AQPGGCAGTFRRRG--FTFDVGATQVAG   59 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecC-CCCCCccceeccCC--EEEeecceEEEe
Confidence            68999999999999999999999999999997 99999998876644  467888777653

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.99  E-value=1.3e-09  Score=97.01  Aligned_cols=63  Identities=22%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeee-eCCcceeeecceeeEeeCCchhH
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRM-IGRQPLIFDHATQFFTVNDSRFG  130 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~  130 (189)
                      +|+|||||++||++|+.|.++|++|+|||+. +.+||++.+.. .++  ..+|.|.+++....+.+.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~-~~~GG~~~s~~~~~g--~~~d~G~~~~~~~~~~~~   64 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEAR-DVLGGKVAAWKDEDG--DWYETGLHIFFGAYPNML   64 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCCCcceeECCCC--CEEEcCcceeccCCchHH
Confidence            5899999999999999999999999999997 99999987753 233  246777776654444433

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.99  E-value=7.6e-10  Score=99.09  Aligned_cols=72  Identities=21%  Similarity=0.236  Sum_probs=59.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHh
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCW  137 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~  137 (189)
                      .+|+|+|||+|||+||++|+++|++|+|||++ +.+||...+.+...+. ..++|.++|-.....+..++++..
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~-~~~GGk~~s~~~~dg~-~~E~glh~f~~~Y~n~~~ll~~~~   72 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEAR-DRLGGKVASWRDSDGN-HVEHGLHVFFGCYYNLLTLLKELP   72 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEecc-CccCceeeeeecCCCC-eeeeeeEEechhHHHHHHHhhhCC
Confidence            47999999999999999999999999999998 9999999887764433 477888888766666665555543

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.98  E-value=1.1e-09  Score=98.79  Aligned_cols=55  Identities=29%  Similarity=0.416  Sum_probs=48.3

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEe
Q 041557           66 VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFT  123 (189)
Q Consensus        66 v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~  123 (189)
                      |+|||||++||+||..|++.|++|+|+|++ +.+||++.+....+  +.||.|++++.
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~-~~~GG~~~t~~~~G--~~fD~G~~~~~   55 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQR-DKPGGRAGVLEDDG--FRFDTGPTVIT   55 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECC-CCCcCceEEEecCC--eEEecCCeEEc
Confidence            689999999999999999999999999998 99999998876654  35777777665

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.98  E-value=1.2e-08  Score=70.01  Aligned_cols=80  Identities=18%  Similarity=0.171  Sum_probs=59.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhcC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLLG  144 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~  144 (189)
                      +|+|||||+.|+-+|..|++.|.+|+|+++. +.+...            +          ++.+...+.+         
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~-~~~~~~------------~----------~~~~~~~~~~---------   48 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERS-DRLLPG------------F----------DPDAAKILEE---------   48 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESS-SSSSTT------------S----------SHHHHHHHHH---------
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEecc-chhhhh------------c----------CHHHHHHHHH---------
Confidence            5899999999999999999999999999997 443311            1          1223332222         


Q ss_pred             chHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557          145 YSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK  184 (189)
Q Consensus       145 ~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~  184 (189)
                            .+..  .|+++++++.|+.++.++++++|.+.+|
T Consensus        49 ------~l~~--~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   49 ------YLRK--RGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             ------HHHH--TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             ------HHHH--CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence                  2222  3899999999999999887777877664

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.97  E-value=1.3e-09  Score=97.31  Aligned_cols=69  Identities=29%  Similarity=0.512  Sum_probs=58.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHH
Q 041557           65 HVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVC  136 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~  136 (189)
                      +|+|||||++||++|++|++++  ++|+|||++ +.+||.+.+...+++  .+|.|.+.|....+.+.+++.++
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~-~r~GG~l~T~~~~G~--~~e~G~~~f~~~~~~~l~li~eL   72 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEAD-DRVGGLLRTVKIDGF--LFERGPHHFLARKEEILDLIKEL   72 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecC-CCCCceEEEEeeCCE--EEeechhheecchHHHHHHHHHh
Confidence            6999999999999999999999  999999998 999999999877664  58888887776655555555443

>PRK06753 hypothetical protein; Provisional

Probab=98.94  E-value=5.4e-09  Score=90.33  Aligned_cols=34  Identities=29%  Similarity=0.549  Sum_probs=31.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      +|+|||||++||++|+.|+++|++|+|||+. +.+
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~-~~~   35 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKN-ESV   35 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecC-Ccc
Confidence            6999999999999999999999999999996 554

>PLN02568 polyamine oxidase

Probab=98.93  E-value=3.5e-09  Score=96.87  Aligned_cols=60  Identities=27%  Similarity=0.441  Sum_probs=52.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC-----CeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEee
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG-----VKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTV  124 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-----~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~  124 (189)
                      ..++|+|||||++||++|+.|++.|     ++|+|||+. ..+||++.+....++  .+|.|+++++.
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~-~~~GGr~~t~~~~g~--~~d~G~~~~~g   68 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGG-DRIGGRINTSEFGGE--RIEMGATWIHG   68 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCC-CCcCCeEEEEEeCCe--EEecCCceeCC
Confidence            3578999999999999999999887     899999997 999999998776553  58889888874

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.93  E-value=8.3e-09  Score=93.76  Aligned_cols=100  Identities=16%  Similarity=0.238  Sum_probs=65.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhh
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVL  141 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~  141 (189)
                      ..+||+|||||++||++|.+|+++|++|+|++.   .+||++.....      +..-..+.......+.+.+.       
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~---~~GG~~~~~~~------~~~~~~~~~~~~~~l~~~l~-------  273 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE---RFGGQVLDTMG------IENFISVPETEGPKLAAALE-------  273 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec---CCCCeeeccCc------ccccCCCCCCCHHHHHHHHH-------
Confidence            468999999999999999999999999999975   48888753210      00000000011111221111       


Q ss_pred             hcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          142 LLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       142 ~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                              +.+..  .+++++++++|+++.+.++.|.|.+.++..+
T Consensus       274 --------~~~~~--~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i  309 (517)
T PRK15317        274 --------EHVKE--YDVDIMNLQRASKLEPAAGLIEVELANGAVL  309 (517)
T ss_pred             --------HHHHH--CCCEEEcCCEEEEEEecCCeEEEEECCCCEE
Confidence                    12221  2689999999999998878899987666544

>PRK07588 hypothetical protein; Provisional

Probab=98.92  E-value=1.2e-08  Score=89.04  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=31.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      +|+|||||++||++|+.|+++|++|+|||+. +.
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~-~~   34 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERA-PE   34 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCC-CC
Confidence            7999999999999999999999999999986 44

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.91  E-value=6.6e-09  Score=84.56  Aligned_cols=41  Identities=29%  Similarity=0.448  Sum_probs=37.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ..||+|+|+||+||+||++|+++|.+|+|||+. -.+||-++
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~-ls~GGG~w   70 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERK-LSFGGGIW   70 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEee-cccCCccc
Confidence            568999999999999999999999999999997 78877653

>PLN02612 phytoene desaturase

Probab=98.91  E-value=8.6e-09  Score=94.80  Aligned_cols=65  Identities=20%  Similarity=0.218  Sum_probs=51.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee-CCcceeeecceeeEeeCCch
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI-GRQPLIFDHATQFFTVNDSR  128 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~-~~~~~~~~~g~~~~~~~~~~  128 (189)
                      ...++|+|||+|++||++|+.|+++|++|+|+|+. +.+||++.+... ++  ..+|.|.+++....+.
T Consensus        91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~-~~~gG~~~s~~~~~G--~~~D~G~h~~~g~~~~  156 (567)
T PLN02612         91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEAR-DVLGGKVAAWKDEDG--DWYETGLHIFFGAYPN  156 (567)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecC-CCCCCcceeeEcCCC--CEEcCCceEEeCCCch
Confidence            34678999999999999999999999999999997 899999887543 32  2467777766544333

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.91  E-value=5e-08  Score=82.38  Aligned_cols=31  Identities=39%  Similarity=0.640  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ||+|||||++|+++|+.|+++|++|+|||++
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            6999999999999999999999999999996

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.90  E-value=9.6e-09  Score=85.63  Aligned_cols=41  Identities=29%  Similarity=0.421  Sum_probs=37.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ...||+|||||++||++|+.|+++|++|+|+|+. ..+||.+
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~-~~~Ggg~   60 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERS-LAFGGGS   60 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccc
Confidence            4679999999999999999999999999999997 8887654

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.90  E-value=3.9e-08  Score=81.37  Aligned_cols=37  Identities=22%  Similarity=0.282  Sum_probs=33.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      +||+|||||++||++|+.|++.|++|+|+|+. ..++.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~-~~~~~   37 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKK-SFPRY   37 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-CCCCc
Confidence            48999999999999999999999999999997 66544

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK07236 hypothetical protein; Provisional

Probab=98.90  E-value=2.6e-08  Score=86.88  Aligned_cols=35  Identities=34%  Similarity=0.555  Sum_probs=32.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +...+|+|||||++||++|+.|+++|++|+|||+.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERS   38 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence            34578999999999999999999999999999996

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.89  E-value=3.3e-09  Score=94.48  Aligned_cols=99  Identities=19%  Similarity=0.298  Sum_probs=72.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhh
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVL  141 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~  141 (189)
                      ..++++|||||++|+++|+.|++.|++|.++|++ +.+||+|....  ..+...|....   .-.+.|.++-        
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKe-psiGGrmak~~--k~FP~~dcs~C---~LaP~m~~v~--------  188 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKE-PSIGGRMAKLN--KTFPTNDCSIC---ILAPKMVEVS--------  188 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecC-CcccccHHhhh--ccCCCcccchh---hccchhhhhc--------
Confidence            4678999999999999999999999999999998 99999986532  11111222211   1222232210        


Q ss_pred             hcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          142 LLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       142 ~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                                   .-+++++.+.++|+.|...-+.|+|......+|
T Consensus       189 -------------~hp~i~l~TyaeV~ev~G~vGnF~vki~kkpry  221 (622)
T COG1148         189 -------------NHPNIELITYAEVEEVSGSVGNFTVKIEKKPRY  221 (622)
T ss_pred             -------------cCCceeeeeeeeeeeecccccceEEEEeccccc
Confidence                         013789999999999998888899987766655

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.88  E-value=1.1e-08  Score=83.21  Aligned_cols=42  Identities=33%  Similarity=0.352  Sum_probs=34.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ...||+|||+||+||+||++|++.|++|+|||+. ..+||.++
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~-~~~GGg~~   57 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERK-LSPGGGMW   57 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESS-SS-BTTTT
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecC-CCCCcccc
Confidence            3578999999999999999999999999999997 88887753

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.88  E-value=6.7e-08  Score=90.29  Aligned_cols=37  Identities=32%  Similarity=0.504  Sum_probs=33.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      ..+|+|||||++|+++|+.|+++|++|+|+|+. ..++
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~-~~~~  296 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTLYEAD-EAPA  296 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEecC-CCcc
Confidence            369999999999999999999999999999986 4443

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.88  E-value=5.4e-09  Score=94.16  Aligned_cols=65  Identities=20%  Similarity=0.313  Sum_probs=51.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeee-eCCcceeeecceeeEeeCCchhHHH
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRM-IGRQPLIFDHATQFFTVNDSRFGEL  132 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~  132 (189)
                      +|+|||||++||++|+.|++.|++|+|||+. +.+||++.+.. .++  ..+|.|.+++....+.+.++
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~-~~~GG~~~~~~~~~g--~~~d~G~~~~~~~~~~~~~~   66 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESR-SFIGGKVGSWVDGDG--NHIEMGLHVFFGCYANLFRL   66 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEec-CCCCceeeeeecCCC--ceEeeceEEecCchHHHHHH
Confidence            5899999999999999999999999999998 99999988753 233  24777877776544444333

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.87  E-value=1.8e-08  Score=91.54  Aligned_cols=101  Identities=13%  Similarity=0.207  Sum_probs=65.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhh
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVV  140 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~  140 (189)
                      ...+||+|||||++||++|..|++.|++|+|++.   .+||++....  .    +.   .+.........++.+.+    
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~---~~GG~~~~~~--~----~~---~~~~~~~~~~~~l~~~l----  273 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE---RIGGQVKDTV--G----IE---NLISVPYTTGSQLAANL----  273 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec---CCCCccccCc--C----cc---cccccCCCCHHHHHHHH----
Confidence            3468999999999999999999999999999974   5788764211  0    00   00000001111111111    


Q ss_pred             hhcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          141 LLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       141 ~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                              .+.+..  .+++++++++|++++..++.|.+.+.++..+
T Consensus       274 --------~~~l~~--~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i  310 (515)
T TIGR03140       274 --------EEHIKQ--YPIDLMENQRAKKIETEDGLIVVTLESGEVL  310 (515)
T ss_pred             --------HHHHHH--hCCeEEcCCEEEEEEecCCeEEEEECCCCEE
Confidence                    122222  2789999999999998878888887665443

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK09126 hypothetical protein; Provisional

Probab=98.86  E-value=1.8e-08  Score=87.69  Aligned_cols=35  Identities=26%  Similarity=0.422  Sum_probs=32.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ..+|+||||||+|+++|+.|+++|++|+|||+. +.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~-~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQ-PL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-Cc
Confidence            578999999999999999999999999999996 54

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.85  E-value=3.1e-08  Score=88.07  Aligned_cols=38  Identities=26%  Similarity=0.339  Sum_probs=34.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      .+||+||||||+|+++|+.|+++|++|+|+|+. ..+|.
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~-~~~g~   42 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERG-NSAGA   42 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcC-CCCCC
Confidence            589999999999999999999999999999997 66553

>PRK06847 hypothetical protein; Provisional

Probab=98.85  E-value=4.8e-08  Score=84.40  Aligned_cols=35  Identities=29%  Similarity=0.664  Sum_probs=32.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ..+|+|||||++||++|..|++.|++|+|||+. +.
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~-~~   38 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEID-PE   38 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecC-CC
Confidence            568999999999999999999999999999986 54

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.85  E-value=2.3e-08  Score=87.95  Aligned_cols=41  Identities=29%  Similarity=0.373  Sum_probs=37.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ..+||+||||||||++||+.|+++|++|+|||+. ..+|...
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~-~~~G~k~   42 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKG-SEPGAKP   42 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecC-CCCCCCc
Confidence            3579999999999999999999999999999997 7777653

>PLN02487 zeta-carotene desaturase

Probab=98.84  E-value=1.6e-08  Score=93.10  Aligned_cols=59  Identities=22%  Similarity=0.388  Sum_probs=48.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee-CCcceeeecceeeEee
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI-GRQPLIFDHATQFFTV  124 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~-~~~~~~~~~g~~~~~~  124 (189)
                      .++|+|||+|++||++|+.|++.|++|+|||+. +.+||++.+... .+  ..++.|.+++..
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~-~~~gG~~~s~~~~~g--~~~e~G~h~~~~  134 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR-PFIGGKVGSFVDKNG--NHIEMGLHVFFG  134 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecC-CCCCCceeeeeecCC--cEEecceeEecC
Confidence            359999999999999999999999999999997 999999877642 22  235667666543

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.83  E-value=2.4e-08  Score=83.37  Aligned_cols=41  Identities=34%  Similarity=0.477  Sum_probs=37.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ...||+|||||++||++|+.|++.|++|+|+|+. ..+||.+
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~-~~~Ggg~   64 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERK-LSFGGGM   64 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecC-CCCCCcc
Confidence            3579999999999999999999999999999997 7887764

>PRK05868 hypothetical protein; Validated

Probab=98.82  E-value=5.3e-08  Score=84.90  Aligned_cols=35  Identities=26%  Similarity=0.365  Sum_probs=32.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ++|+|||||++||++|+.|+++|++|+|||+. +.+
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~-~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERH-PGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCC-CCC
Confidence            47999999999999999999999999999986 554

>TIGR02730 carot_isom carotene isomerase

Probab=98.82  E-value=5.7e-09  Score=94.11  Aligned_cols=44  Identities=25%  Similarity=0.218  Sum_probs=40.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI  108 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~  108 (189)
                      .||+|||+|++||++|..|+++|++|+|+|++ ..+||++.+...
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~-~~~GG~~~~~~~   44 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERY-LIPGGSAGYFER   44 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECC-CCCCCceeEecc
Confidence            47999999999999999999999999999998 999999887554

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.81  E-value=4.6e-08  Score=85.17  Aligned_cols=38  Identities=32%  Similarity=0.607  Sum_probs=33.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      ...+|+|||||++||++|..|++.|++|+|||+. +.++
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~-~~~~   40 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQA-AEIG   40 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeC-cccc
Confidence            3578999999999999999999999999999996 5543

>PRK10015 oxidoreductase; Provisional

Probab=98.81  E-value=2.5e-08  Score=88.71  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=33.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      .+||+||||||+|+++|+.|+++|++|+|+|+. +.+|
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~-~~~g   41 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERG-DSAG   41 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-CCCC
Confidence            579999999999999999999999999999997 5543

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.81  E-value=1.3e-08  Score=90.53  Aligned_cols=72  Identities=25%  Similarity=0.379  Sum_probs=59.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEee-CCchhHHHHHHH
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTV-NDSRFGELVDVC  136 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~l~~~  136 (189)
                      ..++|+|||||+|||+||..|.+.| ..|+|||.. +.+|||+.+..+...  .++.|++|++. .+....++.++.
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~-dRIGGRI~ti~~~d~--~ielGAqwihG~~gNpVY~la~~~   93 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEAS-DRIGGRIHTIPFADG--VIELGAQWIHGEEGNPVYELAKEY   93 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEec-cccCceEeeEEcCCC--eEeecceeecCCCCChHHHHHHHh
Confidence            3568999999999999999999776 579999998 999999998776543  48899999997 566666655544

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=5.7e-08  Score=83.07  Aligned_cols=98  Identities=21%  Similarity=0.230  Sum_probs=63.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCCCcCceeee-eCCcceeeecceeeEeeCCchhHHHHHHHhhh
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMGNPDLEGRMGTRM-IGRQPLIFDHATQFFTVNDSRFGELVDVCWKV  139 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~~~~~gg~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~  139 (189)
                      ..+||+||||||+||+||.++++.+++ ++|+|+  ..+||++.... +..++ .+..+        ....++++.+...
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~--~~~gg~~~~~~~venyp-g~~~~--------~~g~~L~~~~~~~   70 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG--GEPGGQLTKTTDVENYP-GFPGG--------ILGPELMEQMKEQ   70 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec--CCcCCccccceeecCCC-CCccC--------CchHHHHHHHHHH
Confidence            357999999999999999999999998 666676  57888765433 22221 11111        1222333332221


Q ss_pred             hhhcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCee
Q 041557          140 VLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKT  185 (189)
Q Consensus       140 ~~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~  185 (189)
                      .              ...++++.. ..|..++..++.|.|.+.++.
T Consensus        71 a--------------~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~  101 (305)
T COG0492          71 A--------------EKFGVEIVE-DEVEKVELEGGPFKVKTDKGT  101 (305)
T ss_pred             H--------------hhcCeEEEE-EEEEEEeecCceEEEEECCCe
Confidence            1              012667776 788888766658999988876

>PLN02529 lysine-specific histone demethylase 1

Probab=98.80  E-value=1.7e-08  Score=95.15  Aligned_cols=63  Identities=32%  Similarity=0.327  Sum_probs=53.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCC--cceeeecceeeEee
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGR--QPLIFDHATQFFTV  124 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~--~~~~~~~g~~~~~~  124 (189)
                      ...++|+|||||++||++|..|+++|++|+|||+. +.+||++.+.....  ....+|.|+++++.
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~-~~~GG~~~t~~~~~~g~~~~~DlGaswi~g  222 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGR-NRPGGRVYTQKMGRKGQFAAVDLGGSVITG  222 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecC-ccCcCceeeecccCCCCceEEecCCeeccc
Confidence            35678999999999999999999999999999997 99999998876531  11357888888874

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.80  E-value=6.3e-09  Score=91.09  Aligned_cols=33  Identities=33%  Similarity=0.472  Sum_probs=31.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|+||||||+||++|..|++.|++|+|||+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            468999999999999999999999999999995

>PRK08013 oxidoreductase; Provisional

Probab=98.80  E-value=2.9e-08  Score=87.10  Aligned_cols=35  Identities=34%  Similarity=0.464  Sum_probs=32.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ..||+||||||+|+++|+.|+++|++|+|+|+. +.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~-~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQR-VP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCC-CC
Confidence            478999999999999999999999999999996 54

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.79  E-value=3.8e-08  Score=84.89  Aligned_cols=34  Identities=38%  Similarity=0.632  Sum_probs=31.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ||+|||||++||++|+.|+++|++|+|||+. +.+
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~-~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEAT-PAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCC-Ccc
Confidence            6999999999999999999999999999997 654

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.79  E-value=3.8e-08  Score=86.21  Aligned_cols=33  Identities=33%  Similarity=0.486  Sum_probs=31.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+||+|||||++||++|+.|+++|++|+|||+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~   34 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGG   34 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCC
Confidence            468999999999999999999999999999996

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.78  E-value=1.1e-07  Score=82.86  Aligned_cols=33  Identities=33%  Similarity=0.546  Sum_probs=31.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+||+|||||++|+++|..|+++|++|+|||+.
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~   37 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHA   37 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCC
Confidence            478999999999999999999999999999986

>PLN02676 polyamine oxidase

Probab=98.78  E-value=2.2e-08  Score=90.61  Aligned_cols=60  Identities=20%  Similarity=0.411  Sum_probs=50.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCCcCceeeeeCCcceeeecceeeEe
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFT  123 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~  123 (189)
                      ...++|+|||||++||++|+.|+++|. +|+|+|+. +.+||++.+....+  ..+|.|+++++
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~-~~~GG~~~~~~~~g--~~~d~g~~~~~   84 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEAT-DRIGGRMRKANFAG--VSVELGANWVE   84 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCC-CCCCCcceeecCCC--eEEecCCEEEE
Confidence            346789999999999999999999998 59999997 99999998765543  24677777774

>PRK11445 putative oxidoreductase; Provisional

Probab=98.78  E-value=2.9e-08  Score=85.80  Aligned_cols=33  Identities=33%  Similarity=0.204  Sum_probs=30.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      +||+||||||+|+++|..|++. ++|+|+|+. +.
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~-~~   34 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKK-HQ   34 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECC-Cc
Confidence            5899999999999999999999 999999986 53

>PRK06834 hypothetical protein; Provisional

Probab=98.77  E-value=8.9e-08  Score=86.60  Aligned_cols=36  Identities=31%  Similarity=0.404  Sum_probs=33.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ...+|+||||||+||++|..|+++|++|+|+|+. +.
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~-~~   37 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERR-PN   37 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CC
Confidence            3578999999999999999999999999999996 54

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.77  E-value=3.1e-08  Score=86.77  Aligned_cols=37  Identities=27%  Similarity=0.458  Sum_probs=33.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ..++|+|||||++||++|..|+++|++|+|||+. +..
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~-~~~   53 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQ-PAE   53 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecC-Ccc
Confidence            4678999999999999999999999999999996 543

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.77  E-value=5.6e-08  Score=85.56  Aligned_cols=35  Identities=40%  Similarity=0.662  Sum_probs=31.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCCC
Q 041557           65 HVKIIGGGMAVLACALRLDKRG-VKSNVFDMGNPDLE  100 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~~~~~g  100 (189)
                      +|+|||||++||++|+.|+++| ++|+|||+. +.++
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~-~~~~   37 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAA-PAFG   37 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecC-CcCC
Confidence            6999999999999999999998 599999996 6643

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.77  E-value=6.4e-08  Score=84.44  Aligned_cols=36  Identities=31%  Similarity=0.500  Sum_probs=33.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ...+|+||||||+|+++|+.|+++|++|+|+|+. +.
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~-~~   40 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGR-EP   40 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCC-CC
Confidence            4578999999999999999999999999999996 53

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.76  E-value=8.3e-08  Score=84.16  Aligned_cols=35  Identities=31%  Similarity=0.456  Sum_probs=32.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      .+|+|||||++||++|+.|+++|++|+|||+. +.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~-~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKA-QEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecC-Ccc
Confidence            68999999999999999999999999999986 543

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.76  E-value=1.3e-07  Score=82.20  Aligned_cols=34  Identities=35%  Similarity=0.461  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc---CCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR---GVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~---g~~v~v~e~~   95 (189)
                      ...+|+|||||++|+++|+.|+++   |++|+|||+.
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            457899999999999999999998   9999999984

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.75  E-value=1.6e-07  Score=85.64  Aligned_cols=39  Identities=31%  Similarity=0.382  Sum_probs=34.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      ....+|+|||||++||++|..|+++|++|+|||+. +.+.
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~-~~~~   46 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERW-PTLY   46 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCC
Confidence            45679999999999999999999999999999997 6543

>PRK06184 hypothetical protein; Provisional

Probab=98.74  E-value=2.2e-07  Score=83.94  Aligned_cols=36  Identities=31%  Similarity=0.538  Sum_probs=33.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ..+|+||||||+||++|..|+++|++|+|||+. +.+
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~-~~~   38 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKA-PEP   38 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CCC
Confidence            578999999999999999999999999999996 554

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.73  E-value=3.9e-08  Score=86.33  Aligned_cols=67  Identities=15%  Similarity=0.160  Sum_probs=50.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHH
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGEL  132 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  132 (189)
                      .||+|||||++||++|+.|++.|.+|+|+|+. +.+||.+.+....+ .+..+.|++++...+..+.++
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~-~~iGG~~~~~~~~g-~~~~~~G~h~f~t~~~~v~~~   68 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKR-NHIGGNCYDEVDET-ILFHQYGPHIFHTNNQYVWDY   68 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCCceeeecCCC-ceEEeecceeEecCcHHHHHH
Confidence            47999999999999999999999999999997 89999876543322 223466777776555544433

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK07190 hypothetical protein; Provisional

Probab=98.73  E-value=1.7e-07  Score=84.82  Aligned_cols=36  Identities=28%  Similarity=0.333  Sum_probs=33.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ..+|+||||||+||++|..|+++|++|+|+|+. +.+
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~-~~~   40 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKS-DGP   40 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCC-Ccc
Confidence            468999999999999999999999999999996 554

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.73  E-value=2.9e-07  Score=80.52  Aligned_cols=37  Identities=30%  Similarity=0.499  Sum_probs=33.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCCc
Q 041557           64 PHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLEG  101 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~gg  101 (189)
                      .||+|||||++|+++|+.|+++  |++|+|+|+. ..+++
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~-~~~~~   41 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKE-SGPAR   41 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCC-Ccccc
Confidence            6899999999999999999999  9999999996 55543

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.73  E-value=1.6e-07  Score=81.38  Aligned_cols=31  Identities=35%  Similarity=0.630  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRG-VKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~   95 (189)
                      ||+||||||+|+++|..|+++| ++|+|||+.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~   32 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEAN   32 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCC
Confidence            6999999999999999999999 999999986

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.72  E-value=3.7e-08  Score=93.55  Aligned_cols=61  Identities=25%  Similarity=0.274  Sum_probs=50.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcc--eeeecceeeEe
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQP--LIFDHATQFFT  123 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~--~~~~~g~~~~~  123 (189)
                      ..++|+|||||++||++|+.|+++|++|+|+|+. ..+||++.+....+..  ..+|.|+++++
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~-~r~GGr~~t~~~~g~~~~~~~d~Gas~i~  299 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGR-ARPGGRVKTMKMKGDGVVAAADLGGSVLT  299 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecc-ccCCCcccccccCCCCcceeccCCceeec
Confidence            4678999999999999999999999999999997 9999999876654321  23566666655

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.72  E-value=1.2e-07  Score=87.13  Aligned_cols=40  Identities=23%  Similarity=0.396  Sum_probs=36.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      .+||+|||||++||++|..|+++|++|+|||++  ..||.+.
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~--~~GG~~~   43 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD--DFGGQIT   43 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC--CCCceEE
Confidence            479999999999999999999999999999984  6888764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.72  E-value=6.9e-08  Score=83.94  Aligned_cols=37  Identities=30%  Similarity=0.508  Sum_probs=33.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ...||+|||||++|+++|+.|+++|++|+|||+. +.+
T Consensus         6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~-~~~   42 (388)
T PRK07494          6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPE-PPY   42 (388)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCC-CCC
Confidence            4578999999999999999999999999999996 543

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.72  E-value=1.4e-07  Score=82.42  Aligned_cols=34  Identities=35%  Similarity=0.467  Sum_probs=31.1

Q ss_pred             CEEEECCCHHHHHHHHHH--HHcCCeEEEEecCCCCC
Q 041557           65 HVKIIGGGMAVLACALRL--DKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l--~~~g~~v~v~e~~~~~~   99 (189)
                      ||+|||||+|||++|+.|  ++.|.+|+|+|+. +..
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~-~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPK-PKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-ccc
Confidence            799999999999999999  8889999999986 554

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK10262 thioredoxin reductase; Provisional

Probab=98.71  E-value=1.4e-07  Score=80.37  Aligned_cols=42  Identities=17%  Similarity=0.272  Sum_probs=37.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCcee
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT  105 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~  105 (189)
                      ..++|+|||||++||++|..|+++|+++++||+  ...||.+..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~--~~~gg~~~~   46 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG--MEKGGQLTT   46 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe--ecCCCceec
Confidence            468899999999999999999999999999996  467887643

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.71  E-value=4.5e-08  Score=85.40  Aligned_cols=33  Identities=33%  Similarity=0.546  Sum_probs=31.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..||+||||||+|+++|..|+++|++|+|||+.
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~   35 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGG   35 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCC
Confidence            368999999999999999999999999999985

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.71  E-value=1.7e-07  Score=81.67  Aligned_cols=34  Identities=35%  Similarity=0.481  Sum_probs=31.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPD   98 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~   98 (189)
                      +||+||||||+||++|..|+++|  ++|+|||+. +.
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~-~~   37 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAA-PA   37 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCC-Cc
Confidence            58999999999999999999996  999999996 54

>PRK07045 putative monooxygenase; Reviewed

Probab=98.70  E-value=2e-07  Score=81.23  Aligned_cols=36  Identities=31%  Similarity=0.289  Sum_probs=32.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ..+|+||||||+||++|+.|+++|++|+|||+. +.+
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~-~~~   40 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERA-ARN   40 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCC-Ccc
Confidence            468999999999999999999999999999986 544

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.70  E-value=2.6e-07  Score=82.19  Aligned_cols=40  Identities=23%  Similarity=0.320  Sum_probs=35.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||||+.|+++|+.|.+.+  ++|+|+||. ..++.-
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~-~~~a~~   43 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKE-DGVAQE   43 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEcc-Cccccc
Confidence            3579999999999999999999999  999999997 776644

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.69  E-value=6.3e-08  Score=82.67  Aligned_cols=73  Identities=14%  Similarity=0.155  Sum_probs=59.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeC-CcceeeecceeeEeeCCchhHHHHHHHh
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIG-RQPLIFDHATQFFTVNDSRFGELVDVCW  137 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~l~~~~  137 (189)
                      .|++|||+|++|+.+|..|+++|.+|+|+|+. +.+||.+.+...+ ...+....|++.|+..+....+++..+.
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR-~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~   75 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKR-NHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFT   75 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEecc-ccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhh
Confidence            58999999999999999999999999999996 9999998776554 2234456699999998887766655443

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.69  E-value=2.4e-07  Score=80.58  Aligned_cols=37  Identities=35%  Similarity=0.645  Sum_probs=33.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ||+|||||++|+++|+.|++.|++|+|+|+. +..++.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~-~~~~~~   37 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPH-PPIPGN   37 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CCCCCC
Confidence            6999999999999999999999999999997 666653

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.68  E-value=1.7e-07  Score=82.31  Aligned_cols=33  Identities=36%  Similarity=0.481  Sum_probs=31.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+||+||||||+||++|..|+++|++|+|+|+.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            578999999999999999999999999999984

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.68  E-value=4.3e-07  Score=78.81  Aligned_cols=36  Identities=22%  Similarity=0.382  Sum_probs=33.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ..+|+|||||++||++|+.|++.|++|+|+|+. +.+
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~-~~~   40 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPR-APP   40 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-CCc
Confidence            468999999999999999999999999999997 554

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.65  E-value=6.2e-08  Score=83.57  Aligned_cols=71  Identities=18%  Similarity=0.295  Sum_probs=51.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee--CCcceeeecceeeEee-CCchhHHHHH
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI--GRQPLIFDHATQFFTV-NDSRFGELVD  134 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~--~~~~~~~~~g~~~~~~-~~~~~~~~l~  134 (189)
                      +..+|+|||+|++||+||+.|+++ ++|++||.+ ..+||...|...  +......|.|...+.. ..+.+..+++
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~-~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~   80 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEAD-RRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFK   80 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEecc-ccccCccceeeccccCCceeecceeEEecCCCcchHHHHHH
Confidence            456799999999999999999876 799999998 999999988764  2333456666555543 3344444443

>TIGR00275 flavoprotein, HI0933 family

Probab=98.65  E-value=1.3e-07  Score=83.35  Aligned_cols=36  Identities=25%  Similarity=0.471  Sum_probs=33.1

Q ss_pred             EEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           67 KIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        67 ~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      +|||||++||++|+.|+++|++|+|+|+. +.+|+.+
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~-~~~G~k~   36 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKN-KKIGKKL   36 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecC-ccccccc
Confidence            59999999999999999999999999997 8887754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.64  E-value=7.2e-08  Score=85.46  Aligned_cols=47  Identities=28%  Similarity=0.419  Sum_probs=43.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI  108 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~  108 (189)
                      ....+|+|+|+|++||++|+.|.+.||+|+|+|.. +.+|||+.+.+.
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar-~r~GGR~~t~r~   51 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEAR-DRVGGRSLTARA   51 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEecc-CCcCceeEEEec
Confidence            45789999999999999999999999999999996 999999887655

>PRK08244 hypothetical protein; Provisional

Probab=98.64  E-value=4.1e-07  Score=81.96  Aligned_cols=36  Identities=36%  Similarity=0.370  Sum_probs=32.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ..+|+||||||+||++|..|+++|++|+|||+. +.+
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~-~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERL-KET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCC
Confidence            468999999999999999999999999999996 543

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.60  E-value=4.9e-07  Score=69.71  Aligned_cols=118  Identities=14%  Similarity=0.110  Sum_probs=68.2

Q ss_pred             EEECCCHHHHHHHHHHHHc-----CCeEEEEecCCCCCC-cC-ceeeeeCCcceeeecceeeEeeC---C-chhHHHHHH
Q 041557           67 KIIGGGMAVLACALRLDKR-----GVKSNVFDMGNPDLE-GR-MGTRMIGRQPLIFDHATQFFTVN---D-SRFGELVDV  135 (189)
Q Consensus        67 ~IiG~G~~Gl~~A~~l~~~-----g~~v~v~e~~~~~~g-g~-~~~~~~~~~~~~~~~g~~~~~~~---~-~~~~~~l~~  135 (189)
                      +|||+|++|++++..|.++     ..+|+|||+. +. | |. +.+.....  ...+..+...+..   . ..|.++++.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~-~~-G~G~~~~~~~~~~--~llN~~a~~~s~~~~~~~~~f~~Wl~~   76 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPS-PF-GAGGAYRPDQPPS--HLLNTPADQMSLFPDDPGDDFVDWLRA   76 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCC-Cc-cccccCCCCCChH--HhhcccccccccccccCCCCHHHHHHh
Confidence            6999999999999999888     4689999996 44 4 43 32321111  1223333333321   1 456655554


Q ss_pred             Hhhh--hhhc--Cc----------hHHHHHH-hccCCCcEEE-eCceeEEEEEeCCeEEEEeCCeeeee
Q 041557          136 CWKV--VLLL--GY----------SKSQNLN-IFQTSKVNVV-RTCWISNLEPFNGMWYLGENGKTAWA  188 (189)
Q Consensus       136 ~~~~--~~~~--~~----------~~~~~~l-~~~~~~v~v~-~~t~V~~i~~~~~~w~l~~~~~~~~~  188 (189)
                      -..+  ....  .+          .+..+.+ ..++.+++|. ...+|++|+..+++|.|.+.++..+.
T Consensus        77 ~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~  145 (156)
T PF13454_consen   77 NGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIR  145 (156)
T ss_pred             cCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEE
Confidence            2210  0011  11          1112222 2234565544 47799999999999999888876653

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.59  E-value=4.3e-07  Score=79.07  Aligned_cols=32  Identities=25%  Similarity=0.593  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .||+||||||+|+++|+.|++.|++|+|||+.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            47999999999999999999999999999985

>PLN03000 amine oxidase

Probab=98.59  E-value=1.8e-07  Score=89.41  Aligned_cols=63  Identities=27%  Similarity=0.304  Sum_probs=53.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCc--ceeeecceeeEeeC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQ--PLIFDHATQFFTVN  125 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~--~~~~~~g~~~~~~~  125 (189)
                      ..++|+|||||++||.+|+.|.+.|++|+|||+. +.+||++.+.+....  ...+|.|+++++..
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~-~riGGRi~T~~~~g~~~~~~~DlGas~i~g~  247 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGR-KRPGGRVYTKKMEANRVGAAADLGGSVLTGT  247 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEcc-CcCCCCcceecccCCCCceEeecCCeEEeCC
Confidence            4688999999999999999999999999999997 999999998775431  23578888888743

>PLN02463 lycopene beta cyclase

Probab=98.58  E-value=9.1e-07  Score=79.38  Aligned_cols=34  Identities=26%  Similarity=0.393  Sum_probs=32.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...||+|||||++|+++|..|+++|++|+|+|+.
T Consensus        27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~   60 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPS   60 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccC
Confidence            4579999999999999999999999999999986

>PRK09897 hypothetical protein; Provisional

Probab=98.58  E-value=4.5e-07  Score=82.98  Aligned_cols=38  Identities=13%  Similarity=0.256  Sum_probs=32.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGR  102 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~  102 (189)
                      ++|+|||||++|+++|..|.+.+  ++|+|||+. ..+|..
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~-~~~G~G   41 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQA-DEAGVG   41 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecC-CCCCcc
Confidence            47999999999999999998865  489999997 778743

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.57  E-value=9e-07  Score=80.88  Aligned_cols=37  Identities=30%  Similarity=0.423  Sum_probs=33.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ...+|+||||||+||++|+.|+++|++|+|||+. +.+
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~-~~~   58 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDD-DTL   58 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCC
Confidence            4678999999999999999999999999999997 654

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.55  E-value=1e-06  Score=77.10  Aligned_cols=35  Identities=31%  Similarity=0.367  Sum_probs=32.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ..+|+||||||+||++|+.|++.|++|+|||+. +.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~-~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERR-SR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcC-Cc
Confidence            468999999999999999999999999999996 53

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.53  E-value=2.6e-07  Score=84.82  Aligned_cols=44  Identities=27%  Similarity=0.343  Sum_probs=39.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCCCCcCceee
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR----GVKSNVFDMGNPDLEGRMGTR  106 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~----g~~v~v~e~~~~~~gg~~~~~  106 (189)
                      ..++++|||||++||++|..|.+.    |++|+|||+. +.+||++.+.
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~-~~~GG~~~~~   68 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEEL-DVPGGSLDGA   68 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCC-CCCCCCccCc
Confidence            357899999999999999999996    6899999998 9999998753

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.52  E-value=1.6e-07  Score=85.14  Aligned_cols=44  Identities=27%  Similarity=0.325  Sum_probs=39.3

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCCCcCce
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDK--RGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~--~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ....++|+|||+||+||.+|..|++  .|++|+|||+. +.+||.+.
T Consensus        23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~-p~pgGlvr   68 (491)
T PLN02852         23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERL-PTPFGLVR   68 (491)
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecC-CCCcceEe
Confidence            3456789999999999999999987  79999999997 99999865

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.50  E-value=1.5e-07  Score=79.48  Aligned_cols=35  Identities=37%  Similarity=0.573  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      .+|+|||||++||++|+.|+++|++|+|||+. +.+
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~-~~~   36 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERR-PDP   36 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESS-SSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhc-ccc
Confidence            47999999999999999999999999999996 443

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06996 hypothetical protein; Provisional

Probab=98.48  E-value=2.8e-06  Score=74.52  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=31.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcC----CeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRG----VKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g----~~v~v~e~~   95 (189)
                      ...++|+||||||+|+++|+.|++.|    ++|+|+|+.
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~   47 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAR   47 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCC
Confidence            35679999999999999999999987    479999985

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.46  E-value=1.2e-06  Score=76.54  Aligned_cols=37  Identities=32%  Similarity=0.549  Sum_probs=33.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCCcC
Q 041557           65 HVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~gg~  102 (189)
                      ||+|||||++||++|+.|++.  |++|+|+|+. +..+|.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~-~~~~~~   39 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAG-RTIGGN   39 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC-CCCCCc
Confidence            699999999999999999987  9999999997 777764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.45  E-value=2.6e-07  Score=82.46  Aligned_cols=41  Identities=22%  Similarity=0.280  Sum_probs=38.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ..+||+|||||++|+.+|..|+++|++|+|||+. +.+||.+
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~-~~~GG~~   44 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERY-RNVGGGC   44 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecc-ccccccc
Confidence            4589999999999999999999999999999996 7899976

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=98.45  E-value=4.5e-07  Score=79.95  Aligned_cols=64  Identities=22%  Similarity=0.443  Sum_probs=52.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCe--EEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVK--SNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDS  127 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~--v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~  127 (189)
                      ...+|+|+|||++||++|++|++++-+  ++|||+. +.+||.+.+.+... .+.|+.|+.-+....+
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~-~RvGGwirS~r~~n-g~ifE~GPrtlrpag~   75 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEAS-PRVGGWIRSDRMQN-GFIFEEGPRTLRPAGP   75 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecC-CcccceeeeccCCC-ceeeccCCCccCcCCc
Confidence            457899999999999999999999876  4669998 99999998843332 3578888887776665

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.41  E-value=3.5e-07  Score=82.13  Aligned_cols=40  Identities=30%  Similarity=0.405  Sum_probs=37.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||+||+|+.+|..++++|++|+|+|+. ..+||.+
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~-~~~GG~c   42 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR-STLGGTC   42 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-Cceeeee
Confidence            479999999999999999999999999999985 6899975

>PLN02697 lycopene epsilon cyclase

Probab=98.41  E-value=4.4e-06  Score=76.44  Aligned_cols=33  Identities=27%  Similarity=0.284  Sum_probs=31.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..||+|||||++||++|..|++.|++|+|+|+.
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~  140 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD  140 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence            579999999999999999999999999999985

>PLN02661 Putative thiazole synthesis

Probab=98.39  E-value=1.3e-06  Score=76.01  Aligned_cols=41  Identities=32%  Similarity=0.520  Sum_probs=36.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~~~~~gg~~  103 (189)
                      ...||+|||+|++||++|+.|++. |++|+|+|+. ..+||..
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~-~~~GGG~  132 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQS-VSPGGGA  132 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecC-cccccce
Confidence            467999999999999999999986 8999999997 7887743

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=98.38  E-value=9.2e-07  Score=75.75  Aligned_cols=62  Identities=24%  Similarity=0.284  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHH
Q 041557           73 MAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDV  135 (189)
Q Consensus        73 ~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~  135 (189)
                      ++||+||+.|+++|++|+|||+. +.+||++.+.+.......+|.|++++......+..++.+
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~-~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~   62 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEAS-DRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDE   62 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESS-SSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHH
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcC-CCCCcceEEecCCccceeecCCcccccccchhhHHHHHH
Confidence            68999999999999999999998 999999999888721246999999998655555544444

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.37  E-value=6.5e-07  Score=80.22  Aligned_cols=45  Identities=20%  Similarity=0.185  Sum_probs=41.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceee
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTR  106 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~  106 (189)
                      +..+||+|||+|++|+.+|..|++.|++|+++|++ +..||++++.
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n-~~yGG~~as~   46 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRN-PYYGGESASL   46 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCC-CCcCcccccc
Confidence            34689999999999999999999999999999998 9999998865

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.37  E-value=4.3e-07  Score=80.84  Aligned_cols=40  Identities=30%  Similarity=0.443  Sum_probs=33.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCcee
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT  105 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~  105 (189)
                      ||+|||||++|++||+.+++.|.+|+|+|+. ..+||.+..
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~-~~lGG~~t~   40 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKG-GFLGGMATS   40 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SS-SSSTGGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECC-ccCCCcceE
Confidence            6999999999999999999999999999998 999998654

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.37  E-value=5.2e-07  Score=80.22  Aligned_cols=40  Identities=25%  Similarity=0.247  Sum_probs=36.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC-CCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNP-DLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~-~~gg~~  103 (189)
                      .+||+|||||++|+.+|..|+++|++|+|+|+. + ..||.+
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~-~~~~GG~~   43 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQS-NAMYGGTC   43 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCC-CCccceeE
Confidence            579999999999999999999999999999986 5 478865

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.36  E-value=5.9e-07  Score=79.84  Aligned_cols=39  Identities=23%  Similarity=0.249  Sum_probs=35.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC-CCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD-LEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~-~gg~  102 (189)
                      .+||+|||||++|+++|..|+++|++|+|||+. +. +||.
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~-~~~~GG~   42 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEES-KAMYGGT   42 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecC-Cccccee
Confidence            579999999999999999999999999999996 54 5875

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.35  E-value=5.1e-07  Score=78.94  Aligned_cols=32  Identities=25%  Similarity=0.445  Sum_probs=30.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +||+||||||+|+++|+.|++.|++|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            48999999999999999999999999999984

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.35  E-value=6.8e-07  Score=77.26  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=30.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +||+|||||++|+++|+.|+++|++|+|+|+.
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~   32 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF   32 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            47999999999999999999999999999996

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06116 glutathione reductase; Validated

Probab=98.34  E-value=6.1e-07  Score=79.98  Aligned_cols=39  Identities=28%  Similarity=0.405  Sum_probs=35.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|..|+++|++|+|+|+.  .+||.+
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~--~~GG~c   42 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK--RLGGTC   42 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc--chhhhh
Confidence            579999999999999999999999999999984  788864

>PLN02976 amine oxidase

Probab=98.34  E-value=1e-06  Score=87.49  Aligned_cols=60  Identities=22%  Similarity=0.347  Sum_probs=48.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEe
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFT  123 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~  123 (189)
                      ..++|+|||+|++|+++|+.|++.|++|+|||+. +.+||++.+.+... .+.+|.|+++++
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~-~~vGGri~t~~~~~-g~pvDlGas~i~  751 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEAR-SRIGGRVYTDRSSL-SVPVDLGASIIT  751 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeec-cCCCCceeeccccC-CceeccCcEEEe
Confidence            4578999999999999999999999999999997 99999988765321 123566666655

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.34  E-value=5.8e-07  Score=80.31  Aligned_cols=41  Identities=24%  Similarity=0.313  Sum_probs=36.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ..+||+|||||++|+++|..|+++|++|+|+|+. . +||.+.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~-~-~GG~c~   43 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKE-K-LGGTCL   43 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEecc-c-ccccee
Confidence            3579999999999999999999999999999986 5 899753

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.34  E-value=7.6e-07  Score=80.53  Aligned_cols=44  Identities=30%  Similarity=0.424  Sum_probs=38.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHH-HcCCeEEEEecCCCCCCcCcee
Q 041557           61 SSNPHVKIIGGGMAVLACALRLD-KRGVKSNVFDMGNPDLEGRMGT  105 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~-~~g~~v~v~e~~~~~~gg~~~~  105 (189)
                      ...++|+||||||+||.+|..|. +.|++|+|||+. +.+||.+..
T Consensus        37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~-p~pgGLvR~   81 (506)
T PTZ00188         37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKL-PNPYGLIRY   81 (506)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecC-CCCccEEEE
Confidence            35678999999999999999764 679999999997 999999764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.34  E-value=6.3e-07  Score=80.22  Aligned_cols=39  Identities=28%  Similarity=0.416  Sum_probs=36.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|..|+++|++|+|+|+.  .+||.+
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~--~~GG~c   40 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK--KLGGTC   40 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc--ccccce
Confidence            579999999999999999999999999999984  689865

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.34  E-value=5.9e-07  Score=80.15  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=36.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ++||+||||||+|+++|..++++|++|+|+|+  ..+||.+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~--~~~GG~c~   41 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE--PRVGGTCV   41 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec--CccCceee
Confidence            57999999999999999999999999999998  47899754

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.33  E-value=7.4e-07  Score=78.21  Aligned_cols=35  Identities=31%  Similarity=0.543  Sum_probs=32.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ++|+|||||++|+++|+.|++.|++|+|+|++ +.+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~-~~~   36 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRH-RYA   36 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-CCC
Confidence            48999999999999999999999999999997 544

>PRK06370 mercuric reductase; Validated

Probab=98.33  E-value=8e-07  Score=79.55  Aligned_cols=41  Identities=27%  Similarity=0.315  Sum_probs=36.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      +..+||+|||+|++|+++|..|++.|++|+|+|+.  .+||.+
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~--~~GG~c   43 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG--LLGGTC   43 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC--ccCCce
Confidence            34689999999999999999999999999999984  667764

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.32  E-value=9e-07  Score=76.38  Aligned_cols=33  Identities=27%  Similarity=0.240  Sum_probs=31.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+||+|||||++|+++|+.|+++|++|+|+|++
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~   35 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRF   35 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            578999999999999999999999999999996

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.31  E-value=9.3e-07  Score=76.40  Aligned_cols=34  Identities=38%  Similarity=0.615  Sum_probs=32.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|+|||||++|+++|+.|+++|.+|+|+|+.
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~   36 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAG   36 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecC
Confidence            4678999999999999999999999999999986

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.31  E-value=8.7e-07  Score=79.52  Aligned_cols=35  Identities=29%  Similarity=0.411  Sum_probs=32.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus        37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~   71 (450)
T PLN00093         37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERK   71 (450)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            35689999999999999999999999999999986

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.31  E-value=9.4e-07  Score=79.34  Aligned_cols=41  Identities=29%  Similarity=0.465  Sum_probs=37.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ..+||+|||||++|+++|..|+++|++|+|+|+.  .+||.+.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~--~~GG~c~   43 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG--KLGGTCL   43 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc--CCCcceE
Confidence            3689999999999999999999999999999984  7898763

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.30  E-value=1.1e-06  Score=79.74  Aligned_cols=41  Identities=22%  Similarity=0.267  Sum_probs=35.5

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ++...||+|||||++|+++|+.|+++|++|+|+|++ +..+|
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~-d~~~G   43 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKD-DLAQG   43 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECC-CCCCC
Confidence            345689999999999999999999999999999996 54443

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.30  E-value=7.4e-07  Score=78.30  Aligned_cols=37  Identities=41%  Similarity=0.677  Sum_probs=32.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ||+|||+|++||+||+.++++|.+|+|+||. +..||.
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~-~~~gg~   37 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKG-PRLGGS   37 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESS-SGGGSG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEee-cccccc
Confidence            7999999999999999999999999999998 777774

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.30  E-value=8.2e-07  Score=77.88  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=32.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ..+|+|||||++||++|..|+++|++|+|||+. +.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~-~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQ-SR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECC-CC
Confidence            468999999999999999999999999999996 53

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.30  E-value=1.2e-06  Score=79.76  Aligned_cols=40  Identities=18%  Similarity=0.205  Sum_probs=35.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ...+||+|||||+.|+++|+.|+++|++|+|+|++ +..+|
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~-d~~~G   43 (508)
T PRK12266          4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQD-DLASA   43 (508)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecC-CCCCC
Confidence            34689999999999999999999999999999996 55444

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.29  E-value=1.1e-06  Score=75.80  Aligned_cols=32  Identities=28%  Similarity=0.443  Sum_probs=30.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +||+|||||++|+++|+.|+++|++|+|+|+.
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~   32 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERS   32 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            47999999999999999999999999999986

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.29  E-value=1.1e-06  Score=79.03  Aligned_cols=41  Identities=22%  Similarity=0.319  Sum_probs=37.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ..+||+|||||++|+.+|..|++.|++|+|+|+. +.+||.+
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~~GG~c   43 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERY-STLGGVC   43 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecC-Ccccccc
Confidence            3589999999999999999999999999999986 7889965

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.27  E-value=1.2e-06  Score=77.19  Aligned_cols=34  Identities=29%  Similarity=0.516  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      .||+||||||+|+++|+.|+++|++|+|+|+. ..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~-~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERK-PD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecC-CC
Confidence            47999999999999999999999999999986 44

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.27  E-value=1.2e-06  Score=78.17  Aligned_cols=38  Identities=29%  Similarity=0.421  Sum_probs=35.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      +||+|||||++|+.+|..|+++|++|+|+|+  +.+||.+
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~--~~~GG~~   39 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK--EYLGGTC   39 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEec--CCCCCce
Confidence            6899999999999999999999999999998  4788874

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06185 hypothetical protein; Provisional

Probab=98.27  E-value=1.3e-06  Score=76.39  Aligned_cols=34  Identities=29%  Similarity=0.452  Sum_probs=32.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~   38 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKH   38 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            4679999999999999999999999999999986

>TIGR02053 MerA mercuric reductase

Probab=98.26  E-value=1.2e-06  Score=78.31  Aligned_cols=38  Identities=29%  Similarity=0.474  Sum_probs=35.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      +||+|||||++|+++|..|+++|++|+|+|++  .+||.+
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~--~~GG~c   38 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERG--PLGGTC   38 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC--cccCCe
Confidence            58999999999999999999999999999985  488875

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.25  E-value=1.6e-06  Score=77.59  Aligned_cols=40  Identities=33%  Similarity=0.478  Sum_probs=35.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC--CCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD--LEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~--~gg~  102 (189)
                      ...||+|||+|++||++|+.|+++|.+|+|+||. +.  .||.
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~-~~~~~GG~   44 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAA-PREWRGGN   44 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-CCcCCCcc
Confidence            4679999999999999999999999999999997 53  4554

>PRK07538 hypothetical protein; Provisional

Probab=98.25  E-value=1.2e-06  Score=77.05  Aligned_cols=34  Identities=44%  Similarity=0.778  Sum_probs=31.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      +|+|||||++||++|+.|+++|++|+|||+. +.+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~-~~~   35 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAA-PEL   35 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcC-Ccc
Confidence            6999999999999999999999999999996 543

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.24  E-value=1.6e-06  Score=77.44  Aligned_cols=41  Identities=29%  Similarity=0.286  Sum_probs=36.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ..+||+|||||++|+++|..|++.|++|+|+|+  ..+||.+.
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~--~~~GG~~~   42 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK--GPLGGTCL   42 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC--Ccccccee
Confidence            357999999999999999999999999999998  46888653

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.24  E-value=1.8e-06  Score=77.49  Aligned_cols=39  Identities=23%  Similarity=0.333  Sum_probs=35.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||+|++|+++|..|+++|++|+|+|++  .+||.+
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~--~~GG~c   42 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK--YWGGVC   42 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC--CCCCce
Confidence            479999999999999999999999999999984  677763

>PRK14694 putative mercuric reductase; Provisional

Probab=98.24  E-value=1.8e-06  Score=77.57  Aligned_cols=41  Identities=29%  Similarity=0.590  Sum_probs=37.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      .++||+|||||++|+++|..|++.|++|+|||++  .+||.+.
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~--~~GGtc~   45 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG--TIGGTCV   45 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc--cccccee
Confidence            4689999999999999999999999999999985  6899864

>PRK06126 hypothetical protein; Provisional

Probab=98.22  E-value=2e-06  Score=78.45  Aligned_cols=36  Identities=42%  Similarity=0.541  Sum_probs=32.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ...+|+||||||+||++|+.|+++|++|+|||+. +.
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~-~~   41 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERK-DG   41 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CC
Confidence            4578999999999999999999999999999986 44

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.22  E-value=3.5e-06  Score=78.54  Aligned_cols=38  Identities=24%  Similarity=0.369  Sum_probs=33.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      .+||+|||||+.|+++|+.|+++|++|+|+|++ +..+|
T Consensus        71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~-d~a~G  108 (627)
T PLN02464         71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERE-DFSSG  108 (627)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc-ccCCC
Confidence            479999999999999999999999999999996 44444

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.21  E-value=1.8e-06  Score=76.61  Aligned_cols=37  Identities=30%  Similarity=0.504  Sum_probs=34.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCCCcC
Q 041557           65 HVKIIGGGMAVLACALRLDKRG-VKSNVFDMGNPDLEGR  102 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~~~~~gg~  102 (189)
                      ||+|||+|++||++|+.++++| .+|+|+||. +..||.
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~-~~~gg~   38 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKM-PVIGGN   38 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecC-CCCCCc
Confidence            6999999999999999999999 999999997 777765

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.21  E-value=1.7e-06  Score=75.86  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=31.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      +|+|||||++|+++|++|+++|++|+|+|+. ..++
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~-~~~~   36 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQ-PGPA   36 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCC-Cchh
Confidence            6999999999999999999999999999996 5443

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.21  E-value=1.8e-06  Score=84.24  Aligned_cols=41  Identities=29%  Similarity=0.424  Sum_probs=38.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      .++|+|||||++||++|+.|++.|++|+|||+. +.+||++.
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~-~~~GG~~~  203 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQ-PEAGGSLL  203 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CCCCCeee
Confidence            578999999999999999999999999999997 88998764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.20  E-value=2.3e-06  Score=77.74  Aligned_cols=40  Identities=20%  Similarity=0.379  Sum_probs=37.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||+|.+||++|+.+++.|.+|+|+||. +..||.
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~-~~~GG~   99 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKM-PVAGGN   99 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC-CCCCCc
Confidence            4789999999999999999999999999999997 777775

>PRK07121 hypothetical protein; Validated

Probab=98.20  E-value=2.2e-06  Score=77.36  Aligned_cols=41  Identities=20%  Similarity=0.289  Sum_probs=37.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ...||+|||+|.+||++|+.+++.|.+|+|+||. ...||..
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~-~~~gG~s   59 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERA-AGAGGAT   59 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC-CCCCCcc
Confidence            4689999999999999999999999999999997 7777753

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.17  E-value=2.9e-06  Score=77.84  Aligned_cols=36  Identities=25%  Similarity=0.281  Sum_probs=32.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ..||+|||||+.|+++|+.|+++|++|+|+|++ +..
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~-d~~   41 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGLRCILVERH-DIA   41 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCeEEEEECC-CCC
Confidence            579999999999999999999999999999996 443

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.16  E-value=3.5e-06  Score=73.84  Aligned_cols=36  Identities=36%  Similarity=0.488  Sum_probs=32.2

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHc-CC-eEEEEecC
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKR-GV-KSNVFDMG   95 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~-g~-~v~v~e~~   95 (189)
                      ....+||+|||||++|+++|+.|+++ |+ +|+|+|+.
T Consensus        27 ~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~   64 (407)
T TIGR01373        27 PKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG   64 (407)
T ss_pred             CCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence            34578999999999999999999995 95 89999996

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PLN02507 glutathione reductase

Probab=98.15  E-value=3.3e-06  Score=76.68  Aligned_cols=45  Identities=16%  Similarity=0.173  Sum_probs=38.1

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC--------CCCCCcCc
Q 041557           59 PISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG--------NPDLEGRM  103 (189)
Q Consensus        59 ~~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~--------~~~~gg~~  103 (189)
                      |...++|++|||+|++|+.+|..++++|.+|+|+|+.        ...+||.+
T Consensus        21 ~~~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc   73 (499)
T PLN02507         21 ATHYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTC   73 (499)
T ss_pred             ccccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCcccee
Confidence            3345789999999999999999999999999999961        14688875

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.14  E-value=2.6e-06  Score=75.76  Aligned_cols=32  Identities=34%  Similarity=0.400  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHH----cCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDK----RGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~----~g~~v~v~e~~   95 (189)
                      +||+||||||+||++|+.|++    +|++|+|||+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~   36 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV   36 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence            479999999999999999998    89999999994

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK13748 putative mercuric reductase; Provisional

Probab=98.13  E-value=3.1e-06  Score=77.38  Aligned_cols=41  Identities=29%  Similarity=0.507  Sum_probs=37.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ..+||+|||||++|+++|..|++.|.+|+|+|++  .+||.+.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~--~~GG~c~  137 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG--TIGGTCV  137 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC--cceeecc
Confidence            3589999999999999999999999999999984  7898763

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.13  E-value=4.5e-06  Score=72.21  Aligned_cols=43  Identities=37%  Similarity=0.413  Sum_probs=38.4

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      +...++|+|||+|++|+.+|..|++.|++|+|||+. +.+||.+
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~~gg~~   57 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKL-PEPGGLM   57 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCC-CCCCcee
Confidence            334678999999999999999999999999999997 8888764

>PRK14727 putative mercuric reductase; Provisional

Probab=98.12  E-value=3.5e-06  Score=75.95  Aligned_cols=42  Identities=26%  Similarity=0.417  Sum_probs=38.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ..+|++|||+|++|+.+|..|+++|.+|+|+|++ ..+||.|.
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~-~~~GG~c~   56 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGA-DVIGGCCV   56 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CcceeEec
Confidence            4579999999999999999999999999999996 78999874

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.11  E-value=3.6e-06  Score=75.42  Aligned_cols=34  Identities=24%  Similarity=0.445  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~   95 (189)
                      ...||+|||||++|+++|+.|+++  |.+|+|+|++
T Consensus        23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~   58 (460)
T TIGR03329        23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD   58 (460)
T ss_pred             ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            357999999999999999999998  8999999985

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.10  E-value=4.3e-06  Score=77.12  Aligned_cols=40  Identities=28%  Similarity=0.403  Sum_probs=36.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||+|++||++|+.++++|.+|+|+||. ...||.
T Consensus         8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~-~~~gG~   47 (574)
T PRK12842          8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKE-PVFGGT   47 (574)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecC-CCCCCc
Confidence            3679999999999999999999999999999997 777775

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.10  E-value=4.6e-06  Score=75.04  Aligned_cols=41  Identities=29%  Similarity=0.485  Sum_probs=35.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEec-----CCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDM-----GNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~-----~~~~~gg~~  103 (189)
                      .+|++|||+|++|+++|..|++.|.+|+|+|+     +...+||.+
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c   49 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTC   49 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcc
Confidence            57999999999999999999999999999998     114667765

>PLN02985 squalene monooxygenase

Probab=98.10  E-value=4.5e-06  Score=76.11  Aligned_cols=35  Identities=29%  Similarity=0.403  Sum_probs=32.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ....||+|||||++|+++|..|+++|++|+|+|+.
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~   75 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERD   75 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence            35679999999999999999999999999999986

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.10  E-value=4.6e-06  Score=73.33  Aligned_cols=38  Identities=39%  Similarity=0.703  Sum_probs=33.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ..+|+|||||++||++|..|+++|++|+|||+. ..+-+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~-e~~R~   39 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESR-EDPRG   39 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeec-ccccc
Confidence            357999999999999999999999999999985 55433

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.09  E-value=1.3e-05  Score=71.15  Aligned_cols=89  Identities=13%  Similarity=0.119  Sum_probs=54.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCC-chhHHHHHHHhhhhh
Q 041557           65 HVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVND-SRFGELVDVCWKVVL  141 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~  141 (189)
                      +|+|||||++|+++|..|++.+  .+|+|||++ +..+-.      ..       +..++.... ......+.. .    
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~-~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~-~----   62 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKT-DIVSFG------AC-------GLPYFVGGFFDDPNTMIAR-T----   62 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECC-Ccceee------cC-------CCceEeccccCCHHHhhcC-C----
Confidence            6999999999999999999886  589999997 544311      00       001111000 000011100 0    


Q ss_pred             hcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          142 LLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       142 ~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                             .+.+..  .+++++++++|++|+.+++.+++..
T Consensus        63 -------~~~~~~--~gv~~~~~~~V~~id~~~~~v~~~~   93 (444)
T PRK09564         63 -------PEEFIK--SGIDVKTEHEVVKVDAKNKTITVKN   93 (444)
T ss_pred             -------HHHHHH--CCCeEEecCEEEEEECCCCEEEEEE
Confidence                   111211  3789999999999988877777764

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.09  E-value=4e-06  Score=78.49  Aligned_cols=35  Identities=31%  Similarity=0.519  Sum_probs=32.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+..+|+|||||++||++|+.|+++|++|+|||+.
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~  113 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKD  113 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecc
Confidence            35678999999999999999999999999999996

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.09  E-value=4.6e-06  Score=65.51  Aligned_cols=31  Identities=42%  Similarity=0.605  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ||+|||||++|+.+|..|++.+++|+|+|+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~   31 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKS   31 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecc
Confidence            6999999999999999999999999999885

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.09  E-value=4.5e-06  Score=75.76  Aligned_cols=41  Identities=29%  Similarity=0.390  Sum_probs=35.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCC----C---CCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGN----P---DLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~----~---~~gg~~  103 (189)
                      .+||+|||||++|+.+|..|+++|++|+|+|+..    .   .+||.+
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C   52 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTC   52 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCcccccccccee
Confidence            4799999999999999999999999999999630    1   378874

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.07  E-value=5.9e-06  Score=75.74  Aligned_cols=41  Identities=27%  Similarity=0.461  Sum_probs=36.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC--CCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNP--DLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~--~~gg~~  103 (189)
                      ...||+|||+|.+||++|..+++.|.+|+|+||. +  ..||..
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~-~~~~~GG~s   45 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQE-NEANLGGQA   45 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC-CCCCCCCce
Confidence            3579999999999999999999999999999997 6  567753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.07  E-value=5.6e-05  Score=65.84  Aligned_cols=86  Identities=14%  Similarity=0.156  Sum_probs=60.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|+.|+-+|..|++.|.+|+++++. +.+..+.           +          ++.....+.        
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~-~~~l~~~-----------~----------~~~~~~~l~--------  190 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNA-ASLLASL-----------M----------PPEVSSRLQ--------  190 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecC-Ccccchh-----------C----------CHHHHHHHH--------
Confidence            467999999999999999999999999999986 4322110           0          111111111        


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                             +.+..  .|++++++++|++++.+++.|.|.+.++..+
T Consensus       191 -------~~l~~--~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i  226 (377)
T PRK04965        191 -------HRLTE--MGVHLLLKSQLQGLEKTDSGIRATLDSGRSI  226 (377)
T ss_pred             -------HHHHh--CCCEEEECCeEEEEEccCCEEEEEEcCCcEE
Confidence                   12221  3899999999999998777888887766544

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.07  E-value=5e-06  Score=75.68  Aligned_cols=39  Identities=18%  Similarity=0.322  Sum_probs=35.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||+| +||++|+++++.|.+|+|+||. ...||.
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~-~~~Gg~   44 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEAT-DKFGGT   44 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecC-CCCCcc
Confidence            36799999999 9999999999999999999997 776664

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.07  E-value=4.7e-06  Score=75.45  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=31.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPD   98 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~   98 (189)
                      .||+|||||++|+++|+.|++.  |.+|+|+|+. ..
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~-~~   36 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERL-DA   36 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcC-Cc
Confidence            4799999999999999999997  9999999996 44

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.05  E-value=6.1e-06  Score=73.58  Aligned_cols=35  Identities=37%  Similarity=0.602  Sum_probs=31.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      .+|+|||||++|+.+|+.|+++|++|+|||+. +..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~r-p~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMR-PVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-Ccc
Confidence            58999999999999999999999999999985 443

>PTZ00058 glutathione reductase; Provisional

Probab=98.05  E-value=7.2e-06  Score=75.59  Aligned_cols=40  Identities=25%  Similarity=0.321  Sum_probs=36.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ..+||+|||+|++|+.+|..+++.|.+|+|+|++  .+||.+
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~--~~GGtC   86 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD--YLGGTC   86 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc--cccccc
Confidence            5689999999999999999999999999999984  789875

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.02  E-value=7e-05  Score=65.77  Aligned_cols=85  Identities=16%  Similarity=0.132  Sum_probs=58.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+|+|+. +.+.++.           +          ++.+.+.+..       
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~~l~~~-----------~----------~~~~~~~l~~-------  194 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELA-ATVMGRN-----------A----------PPPVQRYLLQ-------  194 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC-Ccchhhh-----------c----------CHHHHHHHHH-------
Confidence            468999999999999999999999999999986 4432221           0          1112221111       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                              .+..  .|++++++++|++++. ++.+.+.+.+++.+
T Consensus       195 --------~l~~--~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i  228 (396)
T PRK09754        195 --------RHQQ--AGVRILLNNAIEHVVD-GEKVELTLQSGETL  228 (396)
T ss_pred             --------HHHH--CCCEEEeCCeeEEEEc-CCEEEEEECCCCEE
Confidence                    1111  3899999999999976 55566666665543

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.01  E-value=8.7e-05  Score=66.27  Aligned_cols=84  Identities=14%  Similarity=0.066  Sum_probs=59.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+.+|..|++.|.+|+|+++. +.+...            +          ++++...+..       
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~-~~~l~~------------~----------d~~~~~~l~~-------  224 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTR-DRLLSF------------L----------DDEISDALSY-------  224 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC-CCcCCc------------C----------CHHHHHHHHH-------
Confidence            468999999999999999999999999999986 432110            1          2223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA  186 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~  186 (189)
                              .+..  .|++++++++|+.++..++++.+.+.++..
T Consensus       225 --------~l~~--~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~  258 (461)
T PRK05249        225 --------HLRD--SGVTIRHNEEVEKVEGGDDGVIVHLKSGKK  258 (461)
T ss_pred             --------HHHH--cCCEEEECCEEEEEEEeCCeEEEEECCCCE
Confidence                    1211  389999999999999877778777655443

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.01  E-value=7.9e-06  Score=76.31  Aligned_cols=34  Identities=24%  Similarity=0.307  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~   95 (189)
                      ...+|+||||||+||++|..|++. |++|+|||+.
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~   65 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERK   65 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcC
Confidence            467899999999999999999995 9999999986

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.00  E-value=8.7e-06  Score=75.38  Aligned_cols=38  Identities=26%  Similarity=0.545  Sum_probs=33.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ..||+|||+|.+||+||+.+++.|.+|+|+||. ...+|
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~-~~~~g   40 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV-PVKRS   40 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEcc-CCCCC
Confidence            458999999999999999999999999999997 55444

>PTZ00367 squalene epoxidase; Provisional

Probab=98.00  E-value=7.7e-06  Score=75.49  Aligned_cols=34  Identities=29%  Similarity=0.344  Sum_probs=32.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...||+|||||++|+++|+.|+++|++|+|+|+.
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~   65 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERD   65 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccc
Confidence            4678999999999999999999999999999986

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.00  E-value=8.2e-06  Score=74.98  Aligned_cols=36  Identities=28%  Similarity=0.378  Sum_probs=32.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ||+|||+|++||+||+.+++.|.+|+|+||. ...+|
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~-~~~~g   36 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKV-YPTRS   36 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEecc-CCCCC
Confidence            6999999999999999999999999999997 65554

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.99  E-value=8.8e-06  Score=75.29  Aligned_cols=40  Identities=23%  Similarity=0.400  Sum_probs=36.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||+|.+||++|+.+++.|.+|+|+||. ...||.
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~-~~~gG~   49 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKS-AHFGGS   49 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcC-CCCCch
Confidence            4679999999999999999999999999999997 777764

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.99  E-value=8.9e-06  Score=74.56  Aligned_cols=39  Identities=26%  Similarity=0.361  Sum_probs=35.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ...||+|||+|.+||+||+.+++.|.+|+|+||. ...+|
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~-~~~~g   53 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKA-ALDDG   53 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEcc-CCCCC
Confidence            4689999999999999999999999999999997 66554

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.99  E-value=9.3e-06  Score=75.30  Aligned_cols=40  Identities=23%  Similarity=0.305  Sum_probs=34.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ..+||+|||||+||+.||+.+++.|.+|+|+|+..+.+|+
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~   42 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ   42 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence            3589999999999999999999999999999986235554

>PRK12839 hypothetical protein; Provisional

Probab=97.98  E-value=1.3e-05  Score=74.02  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=37.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ....||+|||+|.+||++|+.|+++|.+|+|+|+. ..+||..
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~-~~~gg~~   47 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKA-STCGGAT   47 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCccc
Confidence            34689999999999999999999999999999997 7888763

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.97  E-value=4.9e-05  Score=66.74  Aligned_cols=33  Identities=27%  Similarity=0.488  Sum_probs=30.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      .++|+|||||++|+.+|..|+++|+  +|+|++++
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e   37 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDE   37 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCC
Confidence            4679999999999999999999987  69999986

>PRK07846 mycothione reductase; Reviewed

Probab=97.96  E-value=0.00011  Score=65.89  Aligned_cols=84  Identities=17%  Similarity=0.116  Sum_probs=58.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|+.|+-+|..|++.|.+|+|+++. +.+..                      ..++++.+.+..       
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~ll~----------------------~~d~~~~~~l~~-------  215 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRS-GRLLR----------------------HLDDDISERFTE-------  215 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC-Ccccc----------------------ccCHHHHHHHHH-------
Confidence            368999999999999999999999999999986 43210                      012223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                              .+.   .+++++++++|++++..+++..+.+.++..+
T Consensus       216 --------l~~---~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i  249 (451)
T PRK07846        216 --------LAS---KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTV  249 (451)
T ss_pred             --------HHh---cCeEEEeCCEEEEEEEcCCEEEEEECCCcEe
Confidence                    111   2789999999999987766666766555443

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.95  E-value=0.0001  Score=65.88  Aligned_cols=80  Identities=13%  Similarity=0.116  Sum_probs=57.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|+.|+-+|..|++.|.+|+++++. +.+...            +          ++.+.+.+..       
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~-~~~l~~------------~----------~~~~~~~l~~-------  221 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEAL-PRILPG------------E----------DKEISKLAER-------  221 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC-CCcCCc------------C----------CHHHHHHHHH-------
Confidence            368999999999999999999999999999986 432110            1          1223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeC
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGEN  182 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~  182 (189)
                              .+..  .|++++++++|++++.+++.+.+.+.
T Consensus       222 --------~l~~--~gV~i~~~~~V~~i~~~~~~v~v~~~  251 (462)
T PRK06416        222 --------ALKK--RGIKIKTGAKAKKVEQTDDGVTVTLE  251 (462)
T ss_pred             --------HHHH--cCCEEEeCCEEEEEEEeCCEEEEEEE
Confidence                    1211  38999999999999987777777543

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.95  E-value=6.6e-05  Score=64.79  Aligned_cols=75  Identities=19%  Similarity=0.179  Sum_probs=56.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|+.||.+|..|+++|++|+++|.. +.+++++..                     +.+.+.+....     
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~-~~~~~~~~~---------------------~~~~~~~~~~l-----  188 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAA-DRLGGQLLD---------------------PEVAEELAELL-----  188 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcc-cccchhhhh---------------------HHHHHHHHHHH-----
Confidence            578999999999999999999999999999997 777766421                     12222222211     


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM  176 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~  176 (189)
                                ..  .|+++++++++..++...+.
T Consensus       189 ----------~~--~gi~~~~~~~~~~i~~~~~~  210 (415)
T COG0446         189 ----------EK--YGVELLLGTKVVGVEGKGNT  210 (415)
T ss_pred             ----------HH--CCcEEEeCCceEEEEcccCc
Confidence                      11  27899999999999876554

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.95  E-value=1.1e-05  Score=72.11  Aligned_cols=35  Identities=34%  Similarity=0.589  Sum_probs=31.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      +|+|||||++|+.+|+.|+++|++|+|||+. +..+
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~r-p~~~   36 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMR-PEKL   36 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEecc-cccc
Confidence            6999999999999999999999999999985 5543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.94  E-value=1e-05  Score=73.43  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=32.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDL   99 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~   99 (189)
                      ...||+|||||+.|+++|+.|++.  |++|+|+||. ..+
T Consensus         4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~-~~~   42 (494)
T PRK05257          4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERL-DGV   42 (494)
T ss_pred             ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcC-Cch
Confidence            457999999999999999999985  7899999996 544

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.94  E-value=1.2e-05  Score=74.00  Aligned_cols=40  Identities=25%  Similarity=0.287  Sum_probs=35.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||+|.+||+||..+++.|.+|+|+||. ...+|.
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~-~~~~g~   43 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKV-FPTRSH   43 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEcc-CCCCCc
Confidence            3579999999999999999999999999999997 555543

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.94  E-value=1.3e-05  Score=73.74  Aligned_cols=39  Identities=18%  Similarity=0.336  Sum_probs=35.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ..||+|||+|.+||++|+.|++.|.+|+|+|+. ...||.
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~-~~~gG~   44 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ-DKVGGS   44 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCce
Confidence            678999999999999999999999999999997 677775

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.93  E-value=4.8e-05  Score=67.82  Aligned_cols=33  Identities=15%  Similarity=0.337  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCC
Q 041557           65 HVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPD   98 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~   98 (189)
                      +|+|||||++|+.+|..|++.  +++|+|+|++ +.
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~-~~   37 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKD-RD   37 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECC-CC
Confidence            699999999999999999887  5789999997 44

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.93  E-value=1.4e-05  Score=73.60  Aligned_cols=40  Identities=28%  Similarity=0.488  Sum_probs=36.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||+|++|+++|..++++|.+|+|+|+. ..+||.
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~-~~~gG~   45 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKA-PHYGGS   45 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCC-CCCCcc
Confidence            3679999999999999999999999999999997 777763

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.93  E-value=2e-05  Score=73.65  Aligned_cols=38  Identities=24%  Similarity=0.293  Sum_probs=33.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      ...||+|||+|.+||+||..+++.|.+|+|+|+. ..++
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~-~~~~   71 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQ-DSPR   71 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecC-CCCC
Confidence            3579999999999999999999999999999985 5554

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.92  E-value=1.3e-05  Score=74.75  Aligned_cols=38  Identities=26%  Similarity=0.263  Sum_probs=34.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ..||+|||+|.|||+||..+++.|.+|+|+||. ...+|
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~-~~~~g   45 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKS-LFGKA   45 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEecc-CCCCC
Confidence            578999999999999999999999999999997 55443

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.92  E-value=0.00013  Score=65.08  Aligned_cols=82  Identities=18%  Similarity=0.203  Sum_probs=57.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|.+|+.+|..|++.|.+|+|+|+. +.+...            +          ++.+.+.+.        
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~-~~~l~~------------~----------~~~~~~~~~--------  218 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEML-DRILPG------------E----------DAEVSKVVA--------  218 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-CCCCCC------------C----------CHHHHHHHH--------
Confidence            368999999999999999999999999999986 432110            1          112222211        


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK  184 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~  184 (189)
                             +.+..  .|++++++++|++++..++++.+.+.++
T Consensus       219 -------~~l~~--~gi~i~~~~~v~~i~~~~~~v~v~~~~g  251 (461)
T TIGR01350       219 -------KALKK--KGVKILTNTKVTAVEKNDDQVVYENKGG  251 (461)
T ss_pred             -------HHHHH--cCCEEEeCCEEEEEEEeCCEEEEEEeCC
Confidence                   12221  3799999999999988777777765443

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PLN02546 glutathione reductase

Probab=97.92  E-value=1.5e-05  Score=73.39  Aligned_cols=34  Identities=15%  Similarity=0.179  Sum_probs=31.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      ..++||+|||+|++|+.+|..|+++|.+|+|+|+
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            3468999999999999999999999999999996

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.92  E-value=0.00012  Score=64.97  Aligned_cols=81  Identities=17%  Similarity=0.177  Sum_probs=56.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|++|+.+|..|++.|.+|+|+++. +.+..+                      .++.+.+.+..       
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~-~~~l~~----------------------~~~~~~~~~~~-------  206 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAA-STILPR----------------------EEPSVAALAKQ-------  206 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC-CccCCC----------------------CCHHHHHHHHH-------
Confidence            357999999999999999999999999999986 443211                      01122222221       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCC
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG  183 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~  183 (189)
                              .+..  .|++++++++|+.++.+++.+.+..++
T Consensus       207 --------~l~~--~GI~i~~~~~V~~i~~~~~~v~v~~~g  237 (438)
T PRK07251        207 --------YMEE--DGITFLLNAHTTEVKNDGDQVLVVTED  237 (438)
T ss_pred             --------HHHH--cCCEEEcCCEEEEEEecCCEEEEEECC
Confidence                    1211  389999999999998766666665443

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.92  E-value=1.5e-05  Score=73.83  Aligned_cols=39  Identities=21%  Similarity=0.279  Sum_probs=34.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ...||+|||+|.+||+||..+++.|.+|+|+||. ...+|
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~-~~~~g   49 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKV-FPTRS   49 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEecc-CCCCC
Confidence            3579999999999999999999999999999996 55444

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.92  E-value=1.4e-05  Score=74.46  Aligned_cols=40  Identities=23%  Similarity=0.186  Sum_probs=35.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||+|.+||+||+.+++.|.+|+|+||. ...+|.
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~-~~~~g~   67 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKL-FPTRSH   67 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecc-CCCCCC
Confidence            4679999999999999999999999999999997 555553

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.90  E-value=1.6e-05  Score=73.73  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=34.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ..||+|||+|.|||+||+.+++.|.+|+|+||. ...+|
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~-~~~~g   44 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKV-FPTRS   44 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEcc-CCCCC
Confidence            578999999999999999999999999999997 55554

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.90  E-value=1.5e-05  Score=73.90  Aligned_cols=39  Identities=21%  Similarity=0.256  Sum_probs=34.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ...||+|||+|.+||+||+.+++.|.+|+|+||. ...+|
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~-~~~~g   49 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKV-FPTRS   49 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEcc-CCCCc
Confidence            3579999999999999999999999999999996 55444

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.90  E-value=1.6e-05  Score=74.37  Aligned_cols=39  Identities=18%  Similarity=0.214  Sum_probs=34.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ...||+|||+|.+||+||+.+++.|.+|+|+||. ...+|
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~-~~~~g   87 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL-FPTRS   87 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcC-CCCCC
Confidence            3579999999999999999999999999999997 55554

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.89  E-value=1.7e-05  Score=71.12  Aligned_cols=37  Identities=30%  Similarity=0.495  Sum_probs=33.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      +|+|||+|++|+++|..|++.|.+|+|+|++  ..||.+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~--~~GG~c   38 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA--DLGGTC   38 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC--cccccC
Confidence            6999999999999999999999999999985  577753

>TIGR03452 mycothione_red mycothione reductase

Probab=97.89  E-value=0.00016  Score=64.87  Aligned_cols=83  Identities=13%  Similarity=0.155  Sum_probs=57.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|+.|+-+|..|++.|.+|+|+++. +.+...            +          ++++...+..       
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~-~~ll~~------------~----------d~~~~~~l~~-------  218 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRS-TKLLRH------------L----------DEDISDRFTE-------  218 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-Cccccc------------c----------CHHHHHHHHH-------
Confidence            368999999999999999999999999999986 332110            1          1122222211       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA  186 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~  186 (189)
                              .+.   .+++++++++|++++.+++++.+.+.++..
T Consensus       219 --------~~~---~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~  251 (452)
T TIGR03452       219 --------IAK---KKWDIRLGRNVTAVEQDGDGVTLTLDDGST  251 (452)
T ss_pred             --------HHh---cCCEEEeCCEEEEEEEcCCeEEEEEcCCCE
Confidence                    111   278999999999998777777776655433

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.89  E-value=1.1e-05  Score=67.61  Aligned_cols=32  Identities=31%  Similarity=0.392  Sum_probs=28.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~   95 (189)
                      +|++|||+|.+|+.+|.+|++.| ++|+|+|++
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG   33 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAG   33 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESS
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcc
Confidence            48999999999999999999997 799999997

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.87  E-value=1.9e-05  Score=72.89  Aligned_cols=38  Identities=24%  Similarity=0.381  Sum_probs=33.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg  101 (189)
                      ..||+|||+|++||+||+.+++.|  .+|+|+||. ...||
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~-~~~gg   42 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKT-HPIRS   42 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEecc-CCCch
Confidence            468999999999999999999874  899999997 55454

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.86  E-value=2.1e-05  Score=72.22  Aligned_cols=38  Identities=21%  Similarity=0.111  Sum_probs=34.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      +||+|||+|++|+++|+.|+++|++|+|+|++ ...||.
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~-~~~~~~   38 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIG-AADSFL   38 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEecc-CccCCC
Confidence            48999999999999999999999999999997 666654

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.86  E-value=0.00024  Score=63.92  Aligned_cols=83  Identities=13%  Similarity=0.130  Sum_probs=58.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhc
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLL  143 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~  143 (189)
                      ++++|||+|..|+-+|..|++.|.+|+++++. +.+...            +          ++.+...+..        
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~-~~~l~~------------~----------d~~~~~~l~~--------  226 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSR-DRVLPG------------E----------DADAAEVLEE--------  226 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC-CcCCCC------------C----------CHHHHHHHHH--------
Confidence            57999999999999999999999999999986 332211            0          1112222221        


Q ss_pred             CchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557          144 GYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA  186 (189)
Q Consensus       144 ~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~  186 (189)
                             .|..  .|++++++++|++++..++++.+.+.++..
T Consensus       227 -------~L~~--~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~  260 (466)
T PRK07845        227 -------VFAR--RGMTVLKRSRAESVERTGDGVVVTLTDGRT  260 (466)
T ss_pred             -------HHHH--CCcEEEcCCEEEEEEEeCCEEEEEECCCcE
Confidence                   1211  389999999999998777777776655443

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.85  E-value=2.6e-05  Score=72.08  Aligned_cols=41  Identities=29%  Similarity=0.385  Sum_probs=37.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ....||+|||+|++|+++|+.++++|++|+|+|+. ...||.
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~-~~~gg~   50 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKD-PVFGGT   50 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecC-CCCCcc
Confidence            34789999999999999999999999999999997 777775

>PRK06116 glutathione reductase; Validated

Probab=97.85  E-value=0.00019  Score=64.01  Aligned_cols=85  Identities=15%  Similarity=0.105  Sum_probs=58.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+++++. +.+...            +          ++.+.+.+..       
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------~~~~~~~l~~-------  216 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRG-DAPLRG------------F----------DPDIRETLVE-------  216 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC-CCCccc------------c----------CHHHHHHHHH-------
Confidence            468999999999999999999999999999986 332100            1          1122222111       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe-EEEEeCCeeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM-WYLGENGKTAW  187 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~-w~l~~~~~~~~  187 (189)
                              .+..  .|++++++++|++++.++++ +.|.+.++..+
T Consensus       217 --------~L~~--~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i  252 (450)
T PRK06116        217 --------EMEK--KGIRLHTNAVPKAVEKNADGSLTLTLEDGETL  252 (450)
T ss_pred             --------HHHH--CCcEEECCCEEEEEEEcCCceEEEEEcCCcEE
Confidence                    1211  38999999999999876554 77776555443

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.85  E-value=2e-05  Score=72.74  Aligned_cols=39  Identities=23%  Similarity=0.344  Sum_probs=34.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC---CeEEEEecCCCCCCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG---VKSNVFDMGNPDLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g---~~v~v~e~~~~~~gg~  102 (189)
                      ..||+|||+|.+||+||..+++.|   .+|+|+||. ...+|.
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~-~~~~~~   46 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT-QPMRSH   46 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc-cCCCCC
Confidence            468999999999999999999998   899999997 655553

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.85  E-value=2.4e-05  Score=71.13  Aligned_cols=34  Identities=26%  Similarity=0.255  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~   95 (189)
                      ...||+|||||+.|+++|+.|++.+  .+|+|+|+.
T Consensus        44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~   79 (497)
T PTZ00383         44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERR   79 (497)
T ss_pred             CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecC
Confidence            4689999999999999999999964  699999996

>PLN02507 glutathione reductase

Probab=97.85  E-value=0.00025  Score=64.50  Aligned_cols=85  Identities=13%  Similarity=0.049  Sum_probs=59.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+|+++. +.+-.                      ..++++.+.+..       
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~-~~~l~----------------------~~d~~~~~~l~~-------  252 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRK-ELPLR----------------------GFDDEMRAVVAR-------  252 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEec-CCcCc----------------------ccCHHHHHHHHH-------
Confidence            368999999999999999999999999999986 32110                      012223332222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                              .|..  .|++++++++|++++..+++..+.+.++..+
T Consensus       253 --------~l~~--~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i  287 (499)
T PLN02507        253 --------NLEG--RGINLHPRTNLTQLTKTEGGIKVITDHGEEF  287 (499)
T ss_pred             --------HHHh--CCCEEEeCCEEEEEEEeCCeEEEEECCCcEE
Confidence                    1211  3899999999999987777777776555433

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.85  E-value=2.4e-05  Score=70.38  Aligned_cols=41  Identities=29%  Similarity=0.438  Sum_probs=37.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ..+|++|||+|++|..+|..+++.|.+|.++|+. ...||.+
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~-~~lGGtC   43 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKG-ERLGGTC   43 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeec-CCcCceE
Confidence            4689999999999999999999999999999996 6899974

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.84  E-value=2e-05  Score=70.95  Aligned_cols=32  Identities=38%  Similarity=0.668  Sum_probs=30.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .||+|||+|++||++|..+++.|.+|+|+||.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~   33 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPG   33 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            58999999999999999999999999999996

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.84  E-value=2.1e-05  Score=73.76  Aligned_cols=38  Identities=26%  Similarity=0.453  Sum_probs=33.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ..||+|||+|.+||+||..+++.|.+|+|+|+. +..+|
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~-~~~~s   42 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLV-PAKRS   42 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHcCCCEEEEeCC-CCCCc
Confidence            578999999999999999999999999999996 55443

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.84  E-value=2.6e-05  Score=70.73  Aligned_cols=42  Identities=19%  Similarity=0.238  Sum_probs=35.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecC-------CCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMG-------NPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~-------~~~~gg~~  103 (189)
                      ..+||+|||+|++|..+|..++++ |.+|+|+|+.       ...+||.+
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtC   51 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTC   51 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCee
Confidence            468999999999999999999997 9999999972       03578864

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR00551 nadB L-aspartate oxidase

Probab=97.83  E-value=2.5e-05  Score=70.66  Aligned_cols=38  Identities=37%  Similarity=0.490  Sum_probs=33.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ..||+|||+|++||++|+.+++.|. |+|+||. +..+|.
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~-~~~~g~   39 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKA-PVTEGN   39 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEcc-CCCCCc
Confidence            3689999999999999999999997 9999997 665554

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PLN02815 L-aspartate oxidase

Probab=97.82  E-value=2.5e-05  Score=72.51  Aligned_cols=39  Identities=23%  Similarity=0.306  Sum_probs=34.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||+|.+||++|+.+++.| +|+|+||. ...||.
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~-~~~gg~   66 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKD-EPHESN   66 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECC-CCCCCc
Confidence            4579999999999999999999999 99999997 666653

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.81  E-value=3.1e-05  Score=71.43  Aligned_cols=41  Identities=17%  Similarity=0.338  Sum_probs=37.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ....||+|||+| +|+++|..+++.|.+|+|+||. +.+||..
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~-~~~GG~~   54 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKS-SYVGGST   54 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecC-CCCcCcc
Confidence            347899999999 8999999999999999999997 8888853

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.81  E-value=2.4e-05  Score=69.77  Aligned_cols=38  Identities=32%  Similarity=0.343  Sum_probs=33.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ..||+|||+|.+||+||..++ .|.+|+|+||. ...+|.
T Consensus         4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~-~~~gg~   41 (433)
T PRK06175          4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKG-KLNECN   41 (433)
T ss_pred             cccEEEECchHHHHHHHHHhc-cCCCEEEEecC-CCCCCc
Confidence            579999999999999999975 79999999997 666664

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.81  E-value=3.1e-05  Score=70.47  Aligned_cols=38  Identities=13%  Similarity=0.174  Sum_probs=33.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLE  100 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~g  100 (189)
                      ...||+|||||++|+++|+.|++.  +.+|+|+|+. +.+|
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~-~~~a   44 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERL-DSPA   44 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcC-CCcc
Confidence            456999999999999999999999  8999999994 4443

>TIGR02053 MerA mercuric reductase

Probab=97.80  E-value=0.00028  Score=63.13  Aligned_cols=78  Identities=15%  Similarity=0.185  Sum_probs=55.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhc
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLL  143 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~  143 (189)
                      ++++|||+|..|+.+|..|++.|.+|+|+++. +.+...            +          ++++...+..        
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~-~~~l~~------------~----------d~~~~~~l~~--------  215 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRS-DRLLPR------------E----------EPEISAAVEE--------  215 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-CcCCCc------------c----------CHHHHHHHHH--------
Confidence            68999999999999999999999999999986 432211            1          2223222222        


Q ss_pred             CchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          144 GYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       144 ~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                             .+..  .|++++++++|+.++.+++.+.+.+
T Consensus       216 -------~l~~--~gV~i~~~~~V~~i~~~~~~~~v~~  244 (463)
T TIGR02053       216 -------ALAE--EGIEVVTSAQVKAVSVRGGGKIITV  244 (463)
T ss_pred             -------HHHH--cCCEEEcCcEEEEEEEcCCEEEEEE
Confidence                   1111  3899999999999987766665543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.80  E-value=2.4e-05  Score=74.50  Aligned_cols=33  Identities=27%  Similarity=0.285  Sum_probs=30.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCC
Q 041557           65 HVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPD   98 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~   98 (189)
                      +|+|||||++||++|+.|+++  |++|+|||+. +.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~-~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERN-RP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecC-CC
Confidence            699999999999999999998  8999999996 54

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.80  E-value=0.00028  Score=63.04  Aligned_cols=83  Identities=13%  Similarity=0.104  Sum_probs=57.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+|+++. +.+...            +          ++++...+..       
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~-~~~l~~------------~----------d~~~~~~l~~-------  215 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRG-ELILRG------------F----------DDDMRALLAR-------  215 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeC-CCCCcc------------c----------CHHHHHHHHH-------
Confidence            467999999999999999999999999999986 332100            1          1222222211       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKT  185 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~  185 (189)
                              .+..  .|++++++++|++++..++++.+.+.++.
T Consensus       216 --------~l~~--~gV~i~~~~~v~~i~~~~~~~~v~~~~g~  248 (446)
T TIGR01424       216 --------NMEG--RGIRIHPQTSLTSITKTDDGLKVTLSHGE  248 (446)
T ss_pred             --------HHHH--CCCEEEeCCEEEEEEEcCCeEEEEEcCCc
Confidence                    1211  38999999999999876666777665443

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.80  E-value=2.8e-05  Score=71.56  Aligned_cols=39  Identities=23%  Similarity=0.227  Sum_probs=33.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||+|.|||+||+.++ .|.+|+|+||. ...||.
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~-~~~gg~   46 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKD-TLKTSA   46 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEcc-CCCCCc
Confidence            4679999999999999999986 49999999997 666664

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.80  E-value=3e-05  Score=72.74  Aligned_cols=41  Identities=29%  Similarity=0.413  Sum_probs=36.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||+|++|..+|..++++|.+|+|+|++...+||.+
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtC  156 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTC  156 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccce
Confidence            67999999999999999999999999999997424688863

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.79  E-value=3e-05  Score=77.00  Aligned_cols=41  Identities=22%  Similarity=0.387  Sum_probs=37.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ...||+|||+|.+||+||..+++.|.+|+|+||. ...||..
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~-~~~GG~s  448 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKE-AKLGGNS  448 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEcc-CCCCCch
Confidence            3589999999999999999999999999999997 8888863

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.79  E-value=2.8e-05  Score=72.33  Aligned_cols=35  Identities=26%  Similarity=0.378  Sum_probs=32.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~   98 (189)
                      ..||+|||+|.|||+||+.+++.  |.+|+|+||. ..
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~-~~   47 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA-NI   47 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC-Cc
Confidence            47899999999999999999998  9999999997 44

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.77  E-value=3.8e-05  Score=69.06  Aligned_cols=39  Identities=28%  Similarity=0.385  Sum_probs=35.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ++|+|||+|++|+.+|..|+++|.+|+|+|+.  ..||.+.
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~--~~gG~c~   40 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD--GLGGAAV   40 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc--CCCCccc
Confidence            47999999999999999999999999999985  5788764

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.76  E-value=0.00036  Score=62.52  Aligned_cols=81  Identities=17%  Similarity=0.252  Sum_probs=56.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|++|+.+|..|.+.|.+|+|+++. +.+..                      ..++++.+.+.+       
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~-~~ll~----------------------~~d~e~~~~l~~-------  219 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMA-PQLLP----------------------GEDEDIAHILRE-------  219 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecC-CCcCc----------------------cccHHHHHHHHH-------
Confidence            358999999999999999999999999999986 43210                      011223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCC
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG  183 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~  183 (189)
                              .|..  .|++++++++|+.++..++.+.+...+
T Consensus       220 --------~L~~--~GI~i~~~~~V~~i~~~~~~v~~~~~g  250 (458)
T PRK06912        220 --------KLEN--DGVKIFTGAALKGLNSYKKQALFEYEG  250 (458)
T ss_pred             --------HHHH--CCCEEEECCEEEEEEEcCCEEEEEECC
Confidence                    1221  389999999999998766666665433

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.76  E-value=3.7e-05  Score=70.06  Aligned_cols=38  Identities=24%  Similarity=0.290  Sum_probs=33.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ..||+|||+|.|||+||..+++ |.+|+|+||. ...+|.
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~-~~~~g~   40 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKK-TKRNSN   40 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEecc-CCCCCC
Confidence            5699999999999999999976 8999999997 665554

>PRK08275 putative oxidoreductase; Provisional

Probab=97.76  E-value=3.6e-05  Score=70.69  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=32.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPD   98 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~   98 (189)
                      ...||+|||+|.+||+||+.+++.  |.+|+|+||. ..
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~-~~   45 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKA-NV   45 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCC-CC
Confidence            357999999999999999999987  6899999997 54

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.75  E-value=4.2e-05  Score=69.25  Aligned_cols=32  Identities=31%  Similarity=0.454  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      .+|++|||+|++|+.+|..+++.|.+|+|+|+
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~   33 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDF   33 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            47999999999999999999999999999997

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.75  E-value=0.00044  Score=61.94  Aligned_cols=82  Identities=17%  Similarity=0.087  Sum_probs=55.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+|+++. +.+...            +          ++.+.+.+..       
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~-~~il~~------------~----------d~~~~~~~~~-------  215 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRH-ERVLRS------------F----------DSMISETITE-------  215 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC-CCCCcc------------c----------CHHHHHHHHH-------
Confidence            368999999999999999999999999999986 332111            1          1122222211       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe-EEEEeCCe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM-WYLGENGK  184 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~-w~l~~~~~  184 (189)
                              .|..  .|++++++++|+.++.++++ ..+.+.++
T Consensus       216 --------~l~~--~gI~i~~~~~v~~i~~~~~~~~~v~~~~g  248 (450)
T TIGR01421       216 --------EYEK--EGINVHKLSKPVKVEKTVEGKLVIHFEDG  248 (450)
T ss_pred             --------HHHH--cCCEEEcCCEEEEEEEeCCceEEEEECCC
Confidence                    1211  38999999999999875443 55555444

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06370 mercuric reductase; Validated

Probab=97.74  E-value=0.00046  Score=61.86  Aligned_cols=77  Identities=23%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|+.|+-+|..|++.|.+|+|+++. +.+...                      .++.+.+.+..       
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~-~~~l~~----------------------~~~~~~~~l~~-------  220 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERG-PRLLPR----------------------EDEDVAAAVRE-------  220 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcC-CCCCcc----------------------cCHHHHHHHHH-------
Confidence            368999999999999999999999999999986 443211                      01122222221       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEE
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYL  179 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l  179 (189)
                              .+..  .|++++++++|+.++..+++..+
T Consensus       221 --------~l~~--~GV~i~~~~~V~~i~~~~~~~~v  247 (463)
T PRK06370        221 --------ILER--EGIDVRLNAECIRVERDGDGIAV  247 (463)
T ss_pred             --------HHHh--CCCEEEeCCEEEEEEEcCCEEEE
Confidence                    1111  38999999999999877665544

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.74  E-value=3.9e-05  Score=70.31  Aligned_cols=39  Identities=28%  Similarity=0.266  Sum_probs=33.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC-CCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD-LEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~-~gg~  102 (189)
                      ...||+|||+|.|||+||..+ +.|.+|+|+||. .. .||.
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~-~~~~gG~   45 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKG-LFGKSGC   45 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hcCCCEEEEEcc-CCCCCcc
Confidence            357999999999999999999 999999999996 43 4554

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.74  E-value=4.7e-05  Score=69.49  Aligned_cols=40  Identities=28%  Similarity=0.390  Sum_probs=36.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||||+.|+.+|+.++.+|++|+|+|++ +...|.
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~-D~AsGT   50 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKG-DLASGT   50 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecC-cccCcc
Confidence            6789999999999999999999999999999997 666554

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.73  E-value=4.9e-05  Score=70.25  Aligned_cols=41  Identities=24%  Similarity=0.289  Sum_probs=37.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+.||+|||+|++|+++|..++++|++|+|+|+. ..+||..
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~-~~~gg~~   55 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERT-EYVGGTT   55 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCCcc
Confidence            4679999999999999999999999999999997 7788864

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.72  E-value=4.5e-05  Score=68.04  Aligned_cols=33  Identities=33%  Similarity=0.512  Sum_probs=31.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+||+|||+|++|+++|+.|+++|++|+|+|++
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~   34 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKG   34 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence            478999999999999999999999999999985

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.72  E-value=4e-05  Score=70.95  Aligned_cols=39  Identities=21%  Similarity=0.258  Sum_probs=33.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~  102 (189)
                      ..||+|||+|.+||+||+.+++.|  .+|+|+||. ...+|.
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~-~~~~g~   44 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKV-YPMRSH   44 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEcc-CCCCCC
Confidence            468999999999999999999874  799999997 665553

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.72  E-value=0.00027  Score=63.46  Aligned_cols=40  Identities=28%  Similarity=0.376  Sum_probs=33.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcC---CeEEEEecCCCCCCcCce
Q 041557           64 PHVKIIGGGMAVLACALRLDKRG---VKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g---~~v~v~e~~~~~~gg~~~  104 (189)
                      ++|+|||+|++|+.+|..|.+.-   ..|.|||+. ...|+-+.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~-~~~G~Gia   44 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPR-PNFGQGIA   44 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccc-cccCCCcc
Confidence            57999999999999999998763   129999997 88887654

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.71  E-value=4.2e-05  Score=70.81  Aligned_cols=39  Identities=15%  Similarity=0.218  Sum_probs=33.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~gg~  102 (189)
                      ..||+|||+|++||+||+.+++.  |.+|+|+||. ...+|.
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~-~~~~~~   43 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKV-YPMRSH   43 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEcc-CCCCCC
Confidence            46899999999999999999987  5899999997 665554

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.71  E-value=0.00026  Score=63.83  Aligned_cols=82  Identities=16%  Similarity=0.144  Sum_probs=59.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||||+.|+-.|..+++.|.+|+|+|+. +.+-.                      ..++++.+.+....     
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~-~~iLp----------------------~~D~ei~~~~~~~l-----  224 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERG-DRILP----------------------GEDPEISKELTKQL-----  224 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC-CCCCC----------------------cCCHHHHHHHHHHH-----
Confidence            467999999999999999999999999999996 33111                      12334444333311     


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK  184 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~  184 (189)
                                ..  .+++++++++|+.++..+++..+++.++
T Consensus       225 ----------~~--~gv~i~~~~~v~~~~~~~~~v~v~~~~g  254 (454)
T COG1249         225 ----------EK--GGVKILLNTKVTAVEKKDDGVLVTLEDG  254 (454)
T ss_pred             ----------Hh--CCeEEEccceEEEEEecCCeEEEEEecC
Confidence                      11  3789999999999998777655555443

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.71  E-value=0.00055  Score=61.44  Aligned_cols=79  Identities=11%  Similarity=0.081  Sum_probs=55.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+|+|+. +.+...            +          ++++...+.+       
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~~l~~------------~----------d~~~~~~l~~-------  221 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFL-DRALPN------------E----------DAEVSKEIAK-------  221 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecC-CCcCCc------------c----------CHHHHHHHHH-------
Confidence            358999999999999999999999999999985 322110            1          1222222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                              .|..  .|++++++++|+.++..++.+.+.+
T Consensus       222 --------~l~~--~gV~i~~~~~v~~i~~~~~~~~v~~  250 (466)
T PRK07818        222 --------QYKK--LGVKILTGTKVESIDDNGSKVTVTV  250 (466)
T ss_pred             --------HHHH--CCCEEEECCEEEEEEEeCCeEEEEE
Confidence                    2221  3899999999999987666665543

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.70  E-value=0.00048  Score=61.93  Aligned_cols=33  Identities=30%  Similarity=0.426  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|++|+.+|..|++.|.+|+|+|+.
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~  212 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAA  212 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            368999999999999999999999999999986

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.70  E-value=3.6e-05  Score=67.91  Aligned_cols=37  Identities=24%  Similarity=0.349  Sum_probs=28.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ||+|||||+||+.||+.+++.|.+|+||....+.+|.
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~   37 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGE   37 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccc
Confidence            6999999999999999999999999999332144443

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK13748 putative mercuric reductase; Provisional

Probab=97.68  E-value=0.00039  Score=63.68  Aligned_cols=80  Identities=18%  Similarity=0.202  Sum_probs=56.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+|+++. ..    +     .    .+          ++.+.+.+..       
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~----l-----~----~~----------d~~~~~~l~~-------  318 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARS-TL----F-----F----RE----------DPAIGEAVTA-------  318 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-cc----c-----c----cc----------CHHHHHHHHH-------
Confidence            368999999999999999999999999999974 21    0     0    01          1223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCC
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG  183 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~  183 (189)
                              .+..  .|++++++++|+.++.+++.+.+.+.+
T Consensus       319 --------~l~~--~gI~i~~~~~v~~i~~~~~~~~v~~~~  349 (561)
T PRK13748        319 --------AFRA--EGIEVLEHTQASQVAHVDGEFVLTTGH  349 (561)
T ss_pred             --------HHHH--CCCEEEcCCEEEEEEecCCEEEEEecC
Confidence                    1211  389999999999998777777776544

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.68  E-value=0.00061  Score=61.36  Aligned_cols=79  Identities=10%  Similarity=0.092  Sum_probs=55.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|..|+.+|..|++.|.+|+|+++. +.+...                      .++.+...+..       
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~-~~~l~~----------------------~d~~~~~~~~~-------  232 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEAL-PAFLAA----------------------ADEQVAKEAAK-------  232 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCC-CccCCc----------------------CCHHHHHHHHH-------
Confidence            368999999999999999999999999999986 332110                      02223222111       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                              .+..  .|++++++++|+.++..+++..+..
T Consensus       233 --------~l~~--~gi~i~~~~~v~~i~~~~~~v~v~~  261 (475)
T PRK06327        233 --------AFTK--QGLDIHLGVKIGEIKTGGKGVSVAY  261 (475)
T ss_pred             --------HHHH--cCcEEEeCcEEEEEEEcCCEEEEEE
Confidence                    1211  3899999999999987766655543

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.68  E-value=0.00061  Score=60.61  Aligned_cols=81  Identities=14%  Similarity=0.198  Sum_probs=56.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|+.|+-+|..|++.|.+|+|+++. +.+...            +          ++.+...+..       
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~-~~~l~~------------~----------~~~~~~~l~~-------  207 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAA-SLFLPR------------E----------DRDIADNIAT-------  207 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCCC------------c----------CHHHHHHHHH-------
Confidence            358999999999999999999999999999986 322110            0          1122222211       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCC
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG  183 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~  183 (189)
                              .+..  .|++++++++|++++.+++.+.+.+.+
T Consensus       208 --------~l~~--~gV~v~~~~~v~~i~~~~~~v~v~~~~  238 (441)
T PRK08010        208 --------ILRD--QGVDIILNAHVERISHHENQVQVHSEH  238 (441)
T ss_pred             --------HHHh--CCCEEEeCCEEEEEEEcCCEEEEEEcC
Confidence                    1221  389999999999998777777776544

>PRK14727 putative mercuric reductase; Provisional

Probab=97.68  E-value=0.00043  Score=62.45  Aligned_cols=80  Identities=14%  Similarity=0.111  Sum_probs=56.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhc
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLL  143 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~  143 (189)
                      ++++|||+|..|+-+|..|++.|.+|+|+++. ..    +     .    .+          ++.+.+.+.         
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~----l-----~----~~----------d~~~~~~l~---------  235 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TL----L-----F----RE----------DPLLGETLT---------  235 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CC----C-----C----cc----------hHHHHHHHH---------
Confidence            68999999999999999999999999999864 11    0     0    01          112222211         


Q ss_pred             CchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557          144 GYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK  184 (189)
Q Consensus       144 ~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~  184 (189)
                            +.+..  .|++++++++|+.++.+++.+.+.+.++
T Consensus       236 ------~~L~~--~GV~i~~~~~V~~i~~~~~~~~v~~~~g  268 (479)
T PRK14727        236 ------ACFEK--EGIEVLNNTQASLVEHDDNGFVLTTGHG  268 (479)
T ss_pred             ------HHHHh--CCCEEEcCcEEEEEEEeCCEEEEEEcCC
Confidence                  12221  3899999999999987777777766543

>PRK02106 choline dehydrogenase; Validated

Probab=97.67  E-value=5.7e-05  Score=69.40  Aligned_cols=34  Identities=29%  Similarity=0.305  Sum_probs=32.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH-cCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDK-RGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~-~g~~v~v~e~~   95 (189)
                      ..+|++|||+|.+|+.+|.+|++ .|++|+|+|++
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG   38 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAG   38 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCC
Confidence            35799999999999999999999 79999999998

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.66  E-value=0.00049  Score=61.90  Aligned_cols=78  Identities=12%  Similarity=0.041  Sum_probs=54.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|+.|+-+|..|++.|.+|+|+|+. +.+...            +          ++++...+.+       
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~-~~il~~------------~----------d~~~~~~l~~-------  223 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYL-DRICPG------------T----------DTETAKTLQK-------  223 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCC-CCCCCC------------C----------CHHHHHHHHH-------
Confidence            468999999999999999999999999999986 432110            1          1122222111       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEE
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLG  180 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~  180 (189)
                              .|..  .|++++++++|++++..++++.+.
T Consensus       224 --------~l~~--~gV~i~~~~~V~~i~~~~~~v~v~  251 (466)
T PRK06115        224 --------ALTK--QGMKFKLGSKVTGATAGADGVSLT  251 (466)
T ss_pred             --------HHHh--cCCEEEECcEEEEEEEcCCeEEEE
Confidence                    1221  389999999999998766666554

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.66  E-value=6.1e-05  Score=68.97  Aligned_cols=39  Identities=41%  Similarity=0.525  Sum_probs=33.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||+|.+||++|+.+++. .+|+|+||. ...+|.
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~-~~~~g~   45 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKG-PLSEGS   45 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEecc-CCCCCC
Confidence            357999999999999999999886 899999997 666663

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.66  E-value=5e-05  Score=70.62  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=30.9

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           66 VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        66 v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      |+|||+|++||+||..+++.|.+|+|+||. ..++
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~-~~~~   34 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYV-DAPR   34 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEec-CCCC
Confidence            689999999999999999999999999997 6443

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.65  E-value=6.4e-05  Score=69.56  Aligned_cols=37  Identities=22%  Similarity=0.239  Sum_probs=32.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ..||+|||+|++||++|+.+++. .+|+|+||. ...+|
T Consensus         5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~-~~~~g   41 (583)
T PRK08205          5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKL-YPTRS   41 (583)
T ss_pred             eccEEEECccHHHHHHHHHHHhC-CCEEEEeCC-CCCCC
Confidence            57899999999999999999986 899999996 55444

>PRK14694 putative mercuric reductase; Provisional

Probab=97.64  E-value=0.00056  Score=61.45  Aligned_cols=81  Identities=17%  Similarity=0.233  Sum_probs=56.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|+.|+-+|..|++.|.+|+|+++. ..+.                       ..++.+.+.+..       
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~l~-----------------------~~~~~~~~~l~~-------  226 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARS-RVLS-----------------------QEDPAVGEAIEA-------  226 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC-CCCC-----------------------CCCHHHHHHHHH-------
Confidence            368999999999999999999999999999864 2110                       011222222221       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK  184 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~  184 (189)
                              .+..  .|++++++++|..++.+++.+.+.++++
T Consensus       227 --------~l~~--~GI~v~~~~~v~~i~~~~~~~~v~~~~~  258 (468)
T PRK14694        227 --------AFRR--EGIEVLKQTQASEVDYNGREFILETNAG  258 (468)
T ss_pred             --------HHHh--CCCEEEeCCEEEEEEEcCCEEEEEECCC
Confidence                    1211  3899999999999987777676665443

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.63  E-value=6e-05  Score=66.87  Aligned_cols=44  Identities=25%  Similarity=0.395  Sum_probs=37.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCCcCceee
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR------GVKSNVFDMGNPDLEGRMGTR  106 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~------g~~v~v~e~~~~~~gg~~~~~  106 (189)
                      ...||+||||||+||++|.+|.+.      -++|+|+|+. ..+||...+.
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKa-a~~GghtlSG  124 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKA-AEVGGHTLSG  124 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeec-cccCCceecc
Confidence            468999999999999999999754      3679999998 9999986543

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.61  E-value=8.2e-05  Score=69.34  Aligned_cols=31  Identities=29%  Similarity=0.494  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHH----HcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLD----KRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~----~~g~~v~v~e~~   95 (189)
                      ||+|||+|.|||+||+.++    +.|.+|+|+||.
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~   35 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKA   35 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEcc
Confidence            6999999999999999998    679999999996

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=97.61  E-value=0.00011  Score=63.81  Aligned_cols=57  Identities=19%  Similarity=0.302  Sum_probs=44.7

Q ss_pred             HHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHH
Q 041557           77 ACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVD  134 (189)
Q Consensus        77 ~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~  134 (189)
                      +||+.|+++|++|+|+|+. +.+||++.+...+.....+|.|.+++....+.+.++++
T Consensus         1 ~AA~~L~~~G~~v~vlEa~-~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~   57 (419)
T TIGR03467         1 SAAVELARAGARVTLFEAR-PRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLR   57 (419)
T ss_pred             ChHHHHHhCCCceEEEecC-CCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHH
Confidence            4899999999999999998 99999998877654322488899888866555555444

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.56  E-value=0.00083  Score=61.05  Aligned_cols=81  Identities=17%  Similarity=0.012  Sum_probs=54.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhc
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLL  143 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~  143 (189)
                      ++++|||+|..|+-+|..|++.|.+|+|+++.  .+...            +          ++.+.+.+..        
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~------------~----------d~~~~~~l~~--------  230 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRG------------F----------DRQCSEKVVE--------  230 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--ccccc------------C----------CHHHHHHHHH--------
Confidence            57999999999999999999999999999864  11000            1          1122222222        


Q ss_pred             CchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCee
Q 041557          144 GYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKT  185 (189)
Q Consensus       144 ~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~  185 (189)
                             .|..  .|+++++++.|..++..++...|.+.+++
T Consensus       231 -------~l~~--~GV~i~~~~~v~~v~~~~~~~~v~~~~g~  263 (499)
T PTZ00052        231 -------YMKE--QGTLFLEGVVPINIEKMDDKIKVLFSDGT  263 (499)
T ss_pred             -------HHHH--cCCEEEcCCeEEEEEEcCCeEEEEECCCC
Confidence                   1211  37999999999999876555556554433

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.56  E-value=0.00011  Score=63.47  Aligned_cols=33  Identities=42%  Similarity=0.774  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++||+|||||++|++|++.|.++|.++.|+-++
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g   34 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG   34 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence            579999999999999999999999999999865

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.55  E-value=0.00011  Score=67.79  Aligned_cols=40  Identities=30%  Similarity=0.469  Sum_probs=35.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ..+||+|||+|.|||.+|..++++|.+|+|+||. ...+|.
T Consensus         5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~-~~~rg~   44 (562)
T COG1053           5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKA-PPKRGH   44 (562)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcc-ccCCCc
Confidence            4679999999999999999999999999999997 555543

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.54  E-value=0.0001  Score=64.83  Aligned_cols=34  Identities=32%  Similarity=0.431  Sum_probs=32.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...||+|||||.+|.+.|+.|++.|.+|.|+||+
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            4678999999999999999999999999999986

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.53  E-value=0.0008  Score=60.48  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=32.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLE  100 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~g  100 (189)
                      ...||++||||+.|.+++..|.+.  .++|.||||- +.++
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl-~~~A   41 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERL-DSVA   41 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEec-Ccch
Confidence            357999999999999999999988  4789999995 6654

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.52  E-value=0.0009  Score=59.37  Aligned_cols=82  Identities=12%  Similarity=0.116  Sum_probs=55.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|+.|+-+|..|.+.|.+|+++++. +.+...           .+          ++.+.+.+.+       
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~-~~~l~~-----------~~----------~~~~~~~l~~-------  199 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLE-DRILPD-----------SF----------DKEITDVMEE-------  199 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCC-cccCch-----------hc----------CHHHHHHHHH-------
Confidence            468999999999999999999999999999986 322110           01          1223322222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCC
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG  183 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~  183 (189)
                              .+..  .|++++++++|++++.+++.+.+.+++
T Consensus       200 --------~l~~--~gI~v~~~~~v~~i~~~~~~~~v~~~~  230 (444)
T PRK09564        200 --------ELRE--NGVELHLNEFVKSLIGEDKVEGVVTDK  230 (444)
T ss_pred             --------HHHH--CCCEEEcCCEEEEEecCCcEEEEEeCC
Confidence                    1111  379999999999997654445555444

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.52  E-value=0.00057  Score=59.52  Aligned_cols=32  Identities=19%  Similarity=0.313  Sum_probs=28.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRG--VKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~   95 (189)
                      ++|+|||+|++|+.+|..|++++  .+|+|++++
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~   36 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITAD   36 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCC
Confidence            58999999999999999998864  579999986

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.51  E-value=0.00018  Score=62.41  Aligned_cols=111  Identities=16%  Similarity=0.166  Sum_probs=56.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCCC---cCce-eeeeCCcceeeecceeeEeeCCc----hhHHHHH
Q 041557           64 PHVKIIGGGMAVLACALRLDKRG-VKSNVFDMGNPDLE---GRMG-TRMIGRQPLIFDHATQFFTVNDS----RFGELVD  134 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~~~~~g---g~~~-~~~~~~~~~~~~~g~~~~~~~~~----~~~~~l~  134 (189)
                      .|+++||.||++|++|..|.+.+ .+++.||+. +...   |++. .....- .+.-|+    .+..+|    .|.+++.
T Consensus         3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~-~~f~Wh~gmll~~~~~q~-~fl~Dl----vt~~~P~s~~sflnYL~   76 (341)
T PF13434_consen    3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERR-PSFSWHPGMLLPGARMQV-SFLKDL----VTLRDPTSPFSFLNYLH   76 (341)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHH---EEEEES--SS--TTGGG--SS-B-SS--TTSSS----STTT-TTSTTSHHHHHH
T ss_pred             eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecC-CCCCcCCccCCCCCcccc-cccccc----CcCcCCCCcccHHHHHH
Confidence            58999999999999999999887 899999985 5432   2221 111100 001111    112222    2333332


Q ss_pred             ------HHhhhhhhcC-c---hHHHHHHhccCCCcEEEeCceeEEEEEeCC----eEEEEe
Q 041557          135 ------VCWKVVLLLG-Y---SKSQNLNIFQTSKVNVVRTCWISNLEPFNG----MWYLGE  181 (189)
Q Consensus       135 ------~~~~~~~~~~-~---~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~----~w~l~~  181 (189)
                            .|...+...+ .   .++.+|.... ..-.++++++|++|+..++    .|+|.+
T Consensus        77 ~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~-~~~~v~~~~~V~~I~~~~~~~~~~~~V~~  136 (341)
T PF13434_consen   77 EHGRLYEFYNRGYFFPSRREFNDYLRWVAEQ-LDNQVRYGSEVTSIEPDDDGDEDLFRVTT  136 (341)
T ss_dssp             HTT-HHHHHHH--SS-BHHHHHHHHHHHHCC-GTTTEEESEEEEEEEEEEETTEEEEEEEE
T ss_pred             HcCChhhhhhcCCCCCCHHHHHHHHHHHHHh-CCCceEECCEEEEEEEecCCCccEEEEEE
Confidence                  2222222211 1   2334454431 1234999999999998654    599988

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.50  E-value=0.00099  Score=60.02  Aligned_cols=77  Identities=14%  Similarity=0.181  Sum_probs=54.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhc
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLL  143 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~  143 (189)
                      ++++|||+|+.|+-+|..|++.|.+|+|+|+. +.+..                      ..++++.+.+..        
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~il~----------------------~~d~~~~~~~~~--------  223 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMF-DQVIP----------------------AADKDIVKVFTK--------  223 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecC-CCCCC----------------------cCCHHHHHHHHH--------
Confidence            68999999999999999999999999999986 43211                      012223322222        


Q ss_pred             CchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          144 GYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       144 ~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                             .|..   .++++++++|+.++..+++..+..
T Consensus       224 -------~l~~---~v~i~~~~~v~~i~~~~~~~~v~~  251 (471)
T PRK06467        224 -------RIKK---QFNIMLETKVTAVEAKEDGIYVTM  251 (471)
T ss_pred             -------HHhh---ceEEEcCCEEEEEEEcCCEEEEEE
Confidence                   2222   278999999999987766666643

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.48  E-value=0.00083  Score=64.35  Aligned_cols=85  Identities=16%  Similarity=0.173  Sum_probs=56.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||||+.|+-+|..|++.|.+|+|+|.. +.+-.+    .       +          ++.+...+..       
T Consensus       140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~-~~ll~~----~-------l----------d~~~~~~l~~-------  190 (785)
T TIGR02374       140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHA-PGLMAK----Q-------L----------DQTAGRLLQR-------  190 (785)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccC-Cchhhh----h-------c----------CHHHHHHHHH-------
Confidence            467999999999999999999999999999985 332110    0       1          1122222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA  186 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~  186 (189)
                              .+..  .||++++++.|+.+..++....|.+.++..
T Consensus       191 --------~l~~--~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~  224 (785)
T TIGR02374       191 --------ELEQ--KGLTFLLEKDTVEIVGATKADRIRFKDGSS  224 (785)
T ss_pred             --------HHHH--cCCEEEeCCceEEEEcCCceEEEEECCCCE
Confidence                    1111  389999999999997654444555555543

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.46  E-value=0.00014  Score=62.94  Aligned_cols=34  Identities=32%  Similarity=0.393  Sum_probs=31.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|+|||+|+.|+++|+.|+++|.+++++|+.
T Consensus         6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf   39 (399)
T KOG2820|consen    6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQF   39 (399)
T ss_pred             cceeEEEEcccccchHHHHHHHhcCCeEEEEecc
Confidence            4678999999999999999999999999999985

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.46  E-value=0.00014  Score=70.56  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=32.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...||+|||+|.+||++|+.+++.|.+|+|+||.
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~   45 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKA   45 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3579999999999999999999999999999996

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.45  E-value=0.0012  Score=59.84  Aligned_cols=77  Identities=18%  Similarity=0.115  Sum_probs=52.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhc
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLL  143 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~  143 (189)
                      .+++|||+|..|+-+|..|++.|.+|+|+++.  .+        ..    .+          ++++.+.+..        
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~--------l~----~~----------d~~~~~~l~~--------  228 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS--IL--------LR----GF----------DQDCANKVGE--------  228 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec--cc--------cc----cc----------CHHHHHHHHH--------
Confidence            47999999999999999999999999999863  11        00    01          2223322222        


Q ss_pred             CchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          144 GYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       144 ~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                             .|..  .|+++++++.++.++..++...|..
T Consensus       229 -------~L~~--~gV~i~~~~~v~~v~~~~~~~~v~~  257 (484)
T TIGR01438       229 -------HMEE--HGVKFKRQFVPIKVEQIEAKVKVTF  257 (484)
T ss_pred             -------HHHH--cCCEEEeCceEEEEEEcCCeEEEEE
Confidence                   1211  3899999999999987666555544

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.00093  Score=55.15  Aligned_cols=44  Identities=27%  Similarity=0.332  Sum_probs=37.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC---CCCCCcCceee
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG---NPDLEGRMGTR  106 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~---~~~~gg~~~~~  106 (189)
                      ..+|+|||+||++-++|.+++++.++.+|||..   .-.+||++.+.
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT   54 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT   54 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence            347999999999999999999999999999953   14568888764

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.42  E-value=0.0016  Score=57.62  Aligned_cols=33  Identities=30%  Similarity=0.418  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|++|+.+|..|++.|.+|+++++.
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~  169 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRS  169 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            468999999999999999999999999999986

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.42  E-value=0.00017  Score=65.74  Aligned_cols=34  Identities=32%  Similarity=0.388  Sum_probs=30.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ...||+|||+|.+||+||+.++  +.+|+|+||. ..
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~-~~   41 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPA-PL   41 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC--cCCEEEEECC-CC
Confidence            3679999999999999999986  5699999997 54

>TIGR01810 betA choline dehydrogenase

Probab=97.41  E-value=0.00015  Score=66.26  Aligned_cols=31  Identities=35%  Similarity=0.344  Sum_probs=29.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRG-VKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~   95 (189)
                      |++|||+|.+|+.+|.+|++.| ++|+|+|++
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG   32 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAG   32 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecC
Confidence            6899999999999999999998 799999998

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.39  E-value=0.0022  Score=58.24  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=28.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc---CCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR---GVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~---g~~v~v~e~~   95 (189)
                      .++++|||||+.|+-+|..|...   |.+|+|+++.
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~  222 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRN  222 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecC
Confidence            46899999999999999866544   9999999986

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.38  E-value=0.00026  Score=61.50  Aligned_cols=41  Identities=27%  Similarity=0.482  Sum_probs=35.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC-CCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG-NPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~-~~~~gg~~  103 (189)
                      ..+|+|+|+|++||.+|.+|+..|.+|+|+|++ ...+||+.
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA   46 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA   46 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence            568999999999999999999999999999875 14467763

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.36  E-value=0.00025  Score=63.27  Aligned_cols=32  Identities=50%  Similarity=0.804  Sum_probs=30.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +||+|||+|++|+++|+.|+++|++|+|+|++
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~   32 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAG   32 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCC
Confidence            47999999999999999999999999999985

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.33  E-value=0.0019  Score=57.60  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++++|||+|..|+-+|..|++.|.+|+|+++.
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~  180 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRS  180 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecc
Confidence            367999999999999999999999999999986

>PRK07846 mycothione reductase; Reviewed

Probab=97.33  E-value=0.0003  Score=63.05  Aligned_cols=37  Identities=19%  Similarity=0.179  Sum_probs=31.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      +|++|||+|++|..+|..  ..|.+|+|+|++  .+||.+.
T Consensus         2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~--~~GGtC~   38 (451)
T PRK07846          2 YDLIIIGTGSGNSILDER--FADKRIAIVEKG--TFGGTCL   38 (451)
T ss_pred             CCEEEECCCHHHHHHHHH--HCCCeEEEEeCC--CCCCccc
Confidence            689999999999999875  469999999984  6888753

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.32  E-value=0.00033  Score=65.14  Aligned_cols=38  Identities=32%  Similarity=0.440  Sum_probs=33.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      +||+|||+|++|+.+|..+++.|.+|+|+|+. ...+|.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~-~~~~g~   38 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLN-LDTIGK   38 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecc-cccccC
Confidence            47999999999999999999999999999986 444443

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR03452 mycothione_red mycothione reductase

Probab=97.32  E-value=0.00031  Score=63.01  Aligned_cols=38  Identities=16%  Similarity=0.104  Sum_probs=32.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ++|++|||+|++|..+|..  ..|.+|+|+|+  ..+||.+.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~--~~~GGtC~   39 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK--GTFGGTCL   39 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC--CCCCCeee
Confidence            5799999999999998754  57999999998  47898753

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.31  E-value=0.0025  Score=56.89  Aligned_cols=33  Identities=36%  Similarity=0.613  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++++|||+|..|+-+|..|++.|.+|+|+++.
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~  201 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERG  201 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence            468999999999999999999999999999986

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.30  E-value=0.00027  Score=63.60  Aligned_cols=31  Identities=29%  Similarity=0.469  Sum_probs=26.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC---CeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRG---VKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g---~~v~v~e~~   95 (189)
                      +|+|||||++|..+|..|++.+   ++|+|+|+.
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~   34 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESP   34 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-S
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence            5999999999999999999999   899999985

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.28  E-value=0.0013  Score=63.46  Aligned_cols=36  Identities=25%  Similarity=0.315  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR----GVKSNVFDMGNPDL   99 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~----g~~v~v~e~~~~~~   99 (189)
                      ..+|+|||+|++|+.+|..|.++    +++|+||+++ +.+
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e-~~~   42 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEE-PRI   42 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECC-CCC
Confidence            35799999999999999999765    4799999987 554

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.28  E-value=0.00031  Score=64.55  Aligned_cols=35  Identities=29%  Similarity=0.361  Sum_probs=32.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|++|||+|.+|..+|..|+..|++|+|+|++
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG   39 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG   39 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence            45789999999999999999999999999999987

>PLN02546 glutathione reductase

Probab=97.27  E-value=0.0043  Score=57.36  Aligned_cols=82  Identities=16%  Similarity=0.116  Sum_probs=55.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+|+++. +.+...                      .++.+.+.+..       
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~-~~il~~----------------------~d~~~~~~l~~-------  301 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQ-KKVLRG----------------------FDEEVRDFVAE-------  301 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEec-cccccc----------------------cCHHHHHHHHH-------
Confidence            468999999999999999999999999999986 332111                      11222222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEe-CCeEEEEeCCe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPF-NGMWYLGENGK  184 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~-~~~w~l~~~~~  184 (189)
                              .|..  .||+++++++|+.++.. ++...|.++++
T Consensus       302 --------~L~~--~GV~i~~~~~v~~i~~~~~g~v~v~~~~g  334 (558)
T PLN02546        302 --------QMSL--RGIEFHTEESPQAIIKSADGSLSLKTNKG  334 (558)
T ss_pred             --------HHHH--CCcEEEeCCEEEEEEEcCCCEEEEEECCe
Confidence                    1211  38999999999999764 34455554443

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.27  E-value=0.00042  Score=60.81  Aligned_cols=41  Identities=32%  Similarity=0.392  Sum_probs=36.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCCcCce
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~gg~~~  104 (189)
                      .++|.|||+||||+.+|..|.++  +..|.|||+. +.+.|..+
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~-PvPFGLvR   62 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKL-PVPFGLVR   62 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecC-Ccccceee
Confidence            45899999999999999999885  5889999997 99999864

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.25  E-value=0.00026  Score=62.89  Aligned_cols=34  Identities=29%  Similarity=0.592  Sum_probs=30.2

Q ss_pred             EECCCHHHHHHHHHHHHcCCeEEEEecCCCC--CCcC
Q 041557           68 IIGGGMAVLACALRLDKRGVKSNVFDMGNPD--LEGR  102 (189)
Q Consensus        68 IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~--~gg~  102 (189)
                      |||+|.+||++|+.+++.|.+|+|+||. +.  .||.
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~-~~~~~Gg~   36 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAA-PRARRGGN   36 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCC-CCCcCCcC
Confidence            7999999999999999999999999997 53  4554

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.25  E-value=0.001  Score=63.68  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=28.4

Q ss_pred             EEEECCCHHHHHHHHHHHHc---CCeEEEEecCCCCC
Q 041557           66 VKIIGGGMAVLACALRLDKR---GVKSNVFDMGNPDL   99 (189)
Q Consensus        66 v~IiG~G~~Gl~~A~~l~~~---g~~v~v~e~~~~~~   99 (189)
                      |+|||+|++|+.+|..|.++   +++|+|||+. +.+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e-~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEE-PHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCC-CCC
Confidence            68999999999999998775   4789999987 554

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.22  E-value=0.0029  Score=61.23  Aligned_cols=33  Identities=27%  Similarity=0.502  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++++|||+|+.|+-+|..|++.|.+|+|+|..
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~  177 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFA  177 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecc
Confidence            457999999999999999999999999999986

>PTZ00058 glutathione reductase; Provisional

Probab=97.16  E-value=0.0038  Score=57.72  Aligned_cols=33  Identities=21%  Similarity=0.405  Sum_probs=31.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+|+++.
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~  269 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARG  269 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEec
Confidence            468999999999999999999999999999986

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.12  E-value=0.00062  Score=60.46  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=31.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...++|+|||||.+|+.+|..|.+.+++|+|+|+.
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~   42 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPR   42 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCC
Confidence            34578999999999999999998778999999975

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.00087  Score=58.49  Aligned_cols=39  Identities=23%  Similarity=0.484  Sum_probs=32.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ..+||+||||||+|.++|.+.+|+|++.=|+-   ...||+.
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a---erfGGQv  248 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA---ERFGGQV  248 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhh---hhhCCee
Confidence            46899999999999999999999999865553   3568875

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.00  E-value=0.0066  Score=57.20  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|..|+-.|..|++.|.+|+|+|+.
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~  344 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYS  344 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            357999999999999999999999999999986

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.97  E-value=0.0078  Score=53.46  Aligned_cols=32  Identities=28%  Similarity=0.481  Sum_probs=28.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHH--------------cCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDK--------------RGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~--------------~g~~v~v~e~~   95 (189)
                      ++|+|||+|+.|+-+|..|+.              .+.+|+|++..
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~  219 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAG  219 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCC
Confidence            589999999999999999875              36889999986

>PLN02785 Protein HOTHEAD

Probab=96.97  E-value=0.00091  Score=62.11  Aligned_cols=33  Identities=24%  Similarity=0.333  Sum_probs=30.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|++|||+|.+|+.+|.+|++ +++|+|+|++
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G   86 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERG   86 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecC
Confidence            45899999999999999999999 6899999998

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.96  E-value=0.0011  Score=51.18  Aligned_cols=31  Identities=23%  Similarity=0.295  Sum_probs=29.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+|||+|..|.++|..|+++|++|+|+.+.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~   31 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRD   31 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence            4899999999999999999999999999885

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.95  E-value=0.00079  Score=58.26  Aligned_cols=33  Identities=30%  Similarity=0.571  Sum_probs=30.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...|.|||||++|.-+||+++++|+.|.++|..
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMR   35 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMR   35 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcc
Confidence            356999999999999999999999999999974

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=96.95  E-value=0.0011  Score=58.51  Aligned_cols=41  Identities=24%  Similarity=0.411  Sum_probs=38.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ..+|++|||+||.|-.+|...++.|++...+|+. ..+||.+
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr-~~LGGTc   78 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKR-GTLGGTC   78 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEecc-CccCcee
Confidence            5789999999999999999999999999999996 8999974

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=96.92  E-value=0.0009  Score=59.95  Aligned_cols=44  Identities=25%  Similarity=0.305  Sum_probs=38.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCcee
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT  105 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~  105 (189)
                      .+.+|++|||+|.-||++|.+|++.|.+|.|+|+. ...||-..+
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerr-hv~gGaavt   55 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERR-HVIGGAAVT   55 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcCcceEEEEEe-eecCcceee
Confidence            45789999999999999999999999999999996 677776443

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=96.91  E-value=0.00046  Score=58.74  Aligned_cols=39  Identities=21%  Similarity=0.400  Sum_probs=33.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC------CeEEEEecCCCCCCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG------VKSNVFDMGNPDLEG  101 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g------~~v~v~e~~~~~~gg  101 (189)
                      ..++|+|+|||+.|.++|++|++++      +.|+|||+. .-.||
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~-~IA~g   53 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK-EIAGG   53 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec-ccccc
Confidence            4588999999999999999999998      789999985 44443

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.82  E-value=0.0016  Score=56.37  Aligned_cols=38  Identities=24%  Similarity=0.393  Sum_probs=35.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .|+|||+|++||+++..+-.+|-.|+++|+. ...||.-
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~-~s~GGNS   48 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKA-GSIGGNS   48 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEecc-CCcCCcc
Confidence            4999999999999999999998889999997 8999973

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.81  E-value=0.0016  Score=56.27  Aligned_cols=31  Identities=26%  Similarity=0.478  Sum_probs=27.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHc---CCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKR---GVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~---g~~v~v~e~~   95 (189)
                      +|+|||||++|+.+|..|.++   +++|+|+|++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~   34 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPS   34 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCC
Confidence            589999999999999999644   6899999986

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=96.75  E-value=0.0015  Score=56.87  Aligned_cols=34  Identities=32%  Similarity=0.420  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc----CCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR----GVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~----g~~v~v~e~~   95 (189)
                      .+++|+|||||..|++.|+.|.++    |++|+|+|++
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErd  122 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERD  122 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEecc
Confidence            478999999999999999999755    6999999986

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.74  E-value=0.0022  Score=57.68  Aligned_cols=34  Identities=29%  Similarity=0.330  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|.+|+.+|..|+++|++|+++|+.
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~   48 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDG   48 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3568999999999999999999999999999974

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.73  E-value=0.0013  Score=59.33  Aligned_cols=30  Identities=40%  Similarity=0.582  Sum_probs=28.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+|||+|++||++|+.|++. ++|+|+-|.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~   38 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKG   38 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCC
Confidence            799999999999999999998 999999986

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.65  E-value=0.003  Score=49.94  Aligned_cols=31  Identities=23%  Similarity=0.392  Sum_probs=27.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+|||+|..|...|..++..|++|+++|.+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~   31 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRS   31 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            4899999999999999999999999999975

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.64  E-value=0.0026  Score=56.88  Aligned_cols=31  Identities=29%  Similarity=0.279  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|.+|+++|..|+++|++|+++|+.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~   32 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRN   32 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            5899999999999999999999999999985

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=96.64  E-value=0.0052  Score=54.26  Aligned_cols=79  Identities=10%  Similarity=0.094  Sum_probs=57.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..||-++.-..+.|-+|+++|-. +.+||.+.                      .+..+...+.      
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~-~~i~~~mD----------------------~Eisk~~qr~------  261 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFL-DQIGGVMD----------------------GEISKAFQRV------  261 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCeEEEEEeh-hhhccccC----------------------HHHHHHHHHH------
Confidence            468999999999999999999999999999986 77776631                      1122211111      


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCC-eEEEEe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNG-MWYLGE  181 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~-~w~l~~  181 (189)
                               |.  .++++++++|+|+.+++.++ ...|..
T Consensus       262 ---------L~--kQgikF~l~tkv~~a~~~~dg~v~i~v  290 (506)
T KOG1335|consen  262 ---------LQ--KQGIKFKLGTKVTSATRNGDGPVEIEV  290 (506)
T ss_pred             ---------HH--hcCceeEeccEEEEeeccCCCceEEEE
Confidence                     11  14899999999999998877 455533

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.59  E-value=0.035  Score=45.90  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|.+|+-+|..|++.+.+|+++++.
T Consensus       140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~  173 (300)
T TIGR01292       140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR  173 (300)
T ss_pred             CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence            3568999999999999999999999999999985

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.57  E-value=0.0084  Score=53.74  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|..|+-+|..|.+.|.+|+|+++.
T Consensus       271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~  304 (449)
T TIGR01316       271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRR  304 (449)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence            4678999999999999999999999999999985

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.53  E-value=0.01  Score=52.81  Aligned_cols=24  Identities=29%  Similarity=0.300  Sum_probs=20.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG   86 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g   86 (189)
                      ...|+|+|||+.|.-+|-+|+..-
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~  178 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERL  178 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHH
Confidence            346999999999999999997664

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.47  E-value=0.0041  Score=55.84  Aligned_cols=46  Identities=22%  Similarity=0.216  Sum_probs=35.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeee
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRM  107 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~  107 (189)
                      ...+||+|+|-|+.-..+|..|++.|.+|+.+|++ +..||.+++..
T Consensus         2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n-~yYGg~~asl~   47 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRN-DYYGGEWASLN   47 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SS-SSSCGGG-EE-
T ss_pred             CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCC-CCcCCchhccc
Confidence            35689999999999999999999999999999998 99999987654

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.38  E-value=0.0053  Score=54.68  Aligned_cols=34  Identities=32%  Similarity=0.353  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|+|+|..|+.+|..|++.|++|+++|+.
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~   37 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK   37 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999999999999999999999999999985

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=96.31  E-value=0.0031  Score=54.44  Aligned_cols=38  Identities=29%  Similarity=0.451  Sum_probs=33.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLE  100 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~g  100 (189)
                      ..+|++|||||+.||+.|++|.-+  +.+|.|+|+. ...+
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke-~~la   86 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKE-KSLA   86 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehh-hhhc
Confidence            468999999999999999999877  8999999996 4443

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.30  E-value=0.008  Score=45.32  Aligned_cols=30  Identities=27%  Similarity=0.338  Sum_probs=28.7

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           66 VKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        66 v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      |+|+|+|..|+..|+.|++.|++|+++.+.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~   30 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS   30 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence            689999999999999999999999999986

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=96.26  E-value=0.0013  Score=53.95  Aligned_cols=40  Identities=25%  Similarity=0.367  Sum_probs=34.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|+|+|-+||++|+..+++.  ++|.|+|.. -.+||-
T Consensus        75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S-VaPGGG  116 (328)
T KOG2960|consen   75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS-VAPGGG  116 (328)
T ss_pred             hccceEEECCCccccceeeeeeccCCCceEEEEEee-ecCCCc
Confidence            3568999999999999999998664  789999997 777765

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.24  E-value=0.034  Score=49.51  Aligned_cols=34  Identities=35%  Similarity=0.434  Sum_probs=29.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc----CCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR----GVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~----g~~v~v~e~~   95 (189)
                      ..+||+|+||||+|+++|..|...    -++|+|+|..
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence            478999999999999999999744    2689999985

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.20  E-value=0.0071  Score=51.54  Aligned_cols=31  Identities=29%  Similarity=0.474  Sum_probs=29.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||+|..|...|..|+++|++|+++|+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~   34 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDAD   34 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCC
Confidence            6999999999999999999999999999986

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.19  E-value=0.0077  Score=49.32  Aligned_cols=31  Identities=26%  Similarity=0.347  Sum_probs=29.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +++|||+|..|...|..|.+.|+.|+++|+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d   32 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRD   32 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcC
Confidence            6899999999999999999999999999986

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.17  E-value=0.027  Score=50.45  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++|+|||+|..|+-+|..|.+.|. +|+++++.
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~  306 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR  306 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence            46789999999999999999999998 89999974

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=96.17  E-value=0.0078  Score=47.20  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=29.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|.++.-+|..|++.|.+|+++-|.
T Consensus       166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~  199 (203)
T PF13738_consen  166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRS  199 (203)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS
T ss_pred             CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecC
Confidence            4689999999999999999999999999999885

...

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.17  E-value=0.0083  Score=53.36  Aligned_cols=33  Identities=30%  Similarity=0.507  Sum_probs=30.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~   95 (189)
                      .++|+|||||.+||.+|..|.++-  .+|+++|+.
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~   37 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRR   37 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCC
Confidence            568999999999999999999974  889999985

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.16  E-value=0.0097  Score=50.17  Aligned_cols=33  Identities=21%  Similarity=0.134  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|.|||+|..|...|..|+++|++|+++|+.
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~   36 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS   36 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence            457999999999999999999999999999975

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.13  E-value=0.006  Score=48.50  Aligned_cols=31  Identities=26%  Similarity=0.358  Sum_probs=26.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..||.+|..|+++|++|+.+|.+
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~   32 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDID   32 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCC
Confidence            5899999999999999999999999999964

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.10  E-value=0.0087  Score=50.40  Aligned_cols=32  Identities=16%  Similarity=0.348  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++|.|||+|..|...|..|+++|++|+++|.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~   33 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIK   33 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCC
Confidence            46999999999999999999999999999975

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.07  E-value=0.0074  Score=52.65  Aligned_cols=35  Identities=34%  Similarity=0.503  Sum_probs=32.3

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      ....+|.+|||||-+||+||.+.+..|.+|.++|-
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            34678999999999999999999999999999985

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.04  E-value=0.01  Score=50.03  Aligned_cols=32  Identities=19%  Similarity=0.396  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|+|||+|..|...|..|+++|++|+++|.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence            46999999999999999999999999999975

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.02  E-value=0.013  Score=50.55  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|..|...|..++..|++|+++|..
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~   39 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPA   39 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            467999999999999999999999999999975

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.99  E-value=0.0032  Score=57.65  Aligned_cols=40  Identities=35%  Similarity=0.557  Sum_probs=35.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ..+||+|||||..|..||+..+-+|+++.++|++ +...|.
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~-DF~SGT  105 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAG-DFASGT  105 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccceeEEEecc-cccCCc
Confidence            3589999999999999999999999999999997 665554

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=95.98  E-value=0.11  Score=46.95  Aligned_cols=85  Identities=18%  Similarity=0.117  Sum_probs=57.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      ...|+++|+|..|+-+|..|...+++|++++.. +.+--+                     ...+...+.++.       
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e-~~~~~~---------------------lf~~~i~~~~~~-------  263 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPE-PWLLPR---------------------LFGPSIGQFYED-------  263 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccC-ccchhh---------------------hhhHHHHHHHHH-------
Confidence            667999999999999999999999999999986 221111                     111122222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeC--CeEEEEeCCeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFN--GMWYLGENGKTA  186 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~--~~w~l~~~~~~~  186 (189)
                              +|..  .+|+++.++.+.+++...  ..-.|.+.++..
T Consensus       264 --------y~e~--kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~  299 (478)
T KOG1336|consen  264 --------YYEN--KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKT  299 (478)
T ss_pred             --------HHHh--cCeEEEEecceeecccCCCCcEEEEEeccCCE
Confidence                    2222  389999999999998765  335566555544

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=95.98  E-value=0.011  Score=53.71  Aligned_cols=41  Identities=24%  Similarity=0.324  Sum_probs=34.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC----CeEEEEecCCCCCCcCce
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG----VKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g----~~v~v~e~~~~~~gg~~~  104 (189)
                      ++++=|||+|+++|++|..|-+-+    -+|+|+|+. +.+||-+.
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~-~~~GGsld   46 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEEL-DVPGGSLD   46 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCC-CCCCCccc
Confidence            456889999999999999998774    589999996 88887654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.96  E-value=0.011  Score=49.99  Aligned_cols=32  Identities=25%  Similarity=0.331  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||+|..|...|..|+..|++|+++|..
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~   37 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETT   37 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECC
Confidence            47999999999999999999999999999975

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.94  E-value=0.0085  Score=42.95  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=30.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+++|+|||+|..|..-+..|.+.|.+|+|+...
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            4678999999999999999999999999999875

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.92  E-value=0.015  Score=47.02  Aligned_cols=34  Identities=29%  Similarity=0.318  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+++|+|||||.+|+..+..|.+.|.+|+|++..
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4678999999999999999999999999999864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=95.87  E-value=0.079  Score=47.71  Aligned_cols=35  Identities=34%  Similarity=0.390  Sum_probs=30.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHc-----CCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKR-----GVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~-----g~~v~v~e~~   95 (189)
                      ....+++|||+|++|+.+|+.|+..     .+.+.++|.+
T Consensus        16 ~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g   55 (486)
T COG2509          16 NAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVG   55 (486)
T ss_pred             hhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEec
Confidence            3568899999999999999999864     5789999975

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.84  E-value=0.04  Score=51.81  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=30.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++|+|||+|..|+-+|..|.+.|. +|+|+++.
T Consensus       322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~  356 (652)
T PRK12814        322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRR  356 (652)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence            46789999999999999999999996 59999875

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.82  E-value=0.018  Score=44.62  Aligned_cols=33  Identities=33%  Similarity=0.341  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      .+++|+|||||-.|+.-+..|.+.|.+|+|+..
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            578899999999999999999999999999954

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.79  E-value=0.033  Score=48.40  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=27.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      ...++|+|||||.++..++..|.+.+.  +|+++-+.
T Consensus       188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~  224 (341)
T PF13434_consen  188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRS  224 (341)
T ss_dssp             ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESS
T ss_pred             cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECC
Confidence            456789999999999999999999875  78888875

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.78  E-value=0.015  Score=49.03  Aligned_cols=32  Identities=16%  Similarity=0.345  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++|.|||+|..|...|..|+++|++|+++|..
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~   35 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVS   35 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCC
Confidence            56999999999999999999999999999975

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=95.74  E-value=0.089  Score=45.33  Aligned_cols=31  Identities=29%  Similarity=0.546  Sum_probs=25.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH----cC--CeEEEEe
Q 041557           63 NPHVKIIGGGMAVLACALRLDK----RG--VKSNVFD   93 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~----~g--~~v~v~e   93 (189)
                      .++|+|||+|++|+.+|..|++    +|  .+|+|+.
T Consensus       145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~  181 (364)
T TIGR03169       145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA  181 (364)
T ss_pred             CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            4589999999999999999975    34  4788883

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.69  E-value=0.024  Score=42.51  Aligned_cols=34  Identities=29%  Similarity=0.342  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~   95 (189)
                      ..++++|||+|-+|..++..|...|.+ ++|+.|.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            468899999999999999999999987 9999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.69  E-value=0.02  Score=44.53  Aligned_cols=34  Identities=21%  Similarity=0.120  Sum_probs=29.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|+|+|+|.+|+.|+..|...|.+|+++|..
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~   52 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER   52 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence            3478999999999999999999999999999974

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=95.65  E-value=0.015  Score=54.03  Aligned_cols=39  Identities=26%  Similarity=0.353  Sum_probs=34.0

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCC
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMGNPDL   99 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~~~~~   99 (189)
                      ....+|.+|||||-||+.+|.+|.+. .++|+|+|++ ..+
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaG-g~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAG-GDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecC-CCC
Confidence            34679999999999999999999987 5799999997 554

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.64  E-value=0.018  Score=52.49  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||||..|+-+|..|+..|.+|+|+++.
T Consensus       351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~  384 (515)
T TIGR03140       351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFA  384 (515)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeC
Confidence            3578999999999999999999999999999975

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK10262 thioredoxin reductase; Provisional

Probab=95.59  E-value=0.022  Score=48.40  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus       145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~  178 (321)
T PRK10262        145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRR  178 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEEC
Confidence            3578999999999999999999999999999986

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.59  E-value=0.018  Score=48.47  Aligned_cols=30  Identities=17%  Similarity=0.204  Sum_probs=28.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      +|+|||+|..|...|..|++.|++|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            589999999999999999999999999987

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.58  E-value=0.019  Score=48.17  Aligned_cols=31  Identities=16%  Similarity=0.210  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+|||+|..|...|..|++.|++|+++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            4899999999999999999999999999973

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.56  E-value=0.024  Score=47.81  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|.|||+|..|...|..|+..|++|+++|..
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~   36 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSD   36 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence            356999999999999999999999999999975

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.53  E-value=0.024  Score=48.34  Aligned_cols=32  Identities=22%  Similarity=0.271  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|+|||+|..|...|..|++.|++|+++.++
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~   37 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS   37 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence            46999999999999999999999999999875

>PRK12831 putative oxidoreductase; Provisional

Probab=95.48  E-value=0.025  Score=51.02  Aligned_cols=35  Identities=17%  Similarity=0.293  Sum_probs=32.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...++|+|||+|..|+-+|..|.+.|.+|+|+++.
T Consensus       279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~  313 (464)
T PRK12831        279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR  313 (464)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence            45689999999999999999999999999999874

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.44  E-value=0.029  Score=45.17  Aligned_cols=34  Identities=35%  Similarity=0.370  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+++|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            5688999999999999999999999999999764

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=95.43  E-value=0.018  Score=52.86  Aligned_cols=33  Identities=30%  Similarity=0.478  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+||+|||||-||+-||+..++.|.+++++--+
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~   36 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN   36 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence            489999999999999999999999999998654

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.43  E-value=0.024  Score=49.72  Aligned_cols=43  Identities=26%  Similarity=0.319  Sum_probs=38.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ...+|.+|||||-.|++.|++.+..|.++.|+|.. -.+||.+.
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~-f~lGGTCV   60 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP-FGLGGTCV   60 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC-CCcCceEE
Confidence            35789999999999999999999999999999985 68999753

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.41  E-value=0.024  Score=52.27  Aligned_cols=34  Identities=29%  Similarity=0.334  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||||..|+-+|..|++.|.+|+++++.
T Consensus       142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~  175 (555)
T TIGR03143       142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVRE  175 (555)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeC
Confidence            4578999999999999999999999999999986

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.37  E-value=0.025  Score=50.36  Aligned_cols=32  Identities=22%  Similarity=0.255  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||.|..|+.+|..|+++|++|+++|.+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~   35 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDIN   35 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCC
Confidence            56999999999999999999999999999975

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=95.36  E-value=0.026  Score=53.05  Aligned_cols=44  Identities=27%  Similarity=0.390  Sum_probs=33.4

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCCCcCc
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMGNPDLEGRM  103 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~~~~~gg~~  103 (189)
                      .+...+|+|||+|..|+.+|+.|++.|.+ ++++|+..-..|+.|
T Consensus        36 ~~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttw   80 (856)
T KOG2844|consen   36 LPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTW   80 (856)
T ss_pred             CCCcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeecccccc
Confidence            34457899999999999999999999998 556666523334443

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.35  E-value=0.032  Score=47.38  Aligned_cols=32  Identities=22%  Similarity=0.368  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++|.|||+|..|...|..|++.|++|+++|..
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~   36 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVM   36 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            56999999999999999999999999999974

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.35  E-value=0.026  Score=47.36  Aligned_cols=32  Identities=19%  Similarity=0.229  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||+|..|...|..|+++|++|+++|..
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~   35 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDIS   35 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCC
Confidence            46999999999999999999999999999964

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.29  E-value=0.025  Score=48.45  Aligned_cols=31  Identities=16%  Similarity=0.235  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||+|..|...|..|++.|++|+++++.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            5999999999999999999999999999975

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.28  E-value=0.029  Score=51.20  Aligned_cols=34  Identities=24%  Similarity=0.381  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|.+|+-+|..|+..+.+|+|+++.
T Consensus       350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~  383 (517)
T PRK15317        350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFA  383 (517)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEEC
Confidence            4678999999999999999999999999999986

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.19  E-value=0.13  Score=46.47  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=29.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++|+|||+|..|+-+|..+.+.|. +|++++..
T Consensus       280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~  314 (471)
T PRK12810        280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM  314 (471)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence            46789999999999999999888886 68877654

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.12  E-value=0.041  Score=44.26  Aligned_cols=34  Identities=26%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...+|+|||+|-.|...|..|++.|+ +++|+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45789999999999999999999999 69999974

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.12  E-value=0.032  Score=50.15  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|.|+|.|.+|+++|..|.++|++|+++|..
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~   46 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKK   46 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCC
Confidence            467999999999999999999999999999975

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.09  E-value=0.033  Score=47.50  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=29.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|+|||+|..|...|..|++.|.+|+++.+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            36999999999999999999999999999985

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.04  E-value=0.04  Score=48.38  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|+|||+|.+|+.+|..|...|.+|+++|+.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~  199 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN  199 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            4567999999999999999999999999999974

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.04  E-value=0.037  Score=50.26  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|+|.|.+|++++..|...|.+|+++|..
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4568999999999999999999999999999964

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=94.98  E-value=0.038  Score=47.74  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=30.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~   95 (189)
                      ..++|+|||+|..|+-+|..|.+.|.+ |+|+++.
T Consensus       171 ~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~  205 (352)
T PRK12770        171 EGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR  205 (352)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence            357899999999999999999999987 9999874

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.96  E-value=0.038  Score=49.18  Aligned_cols=33  Identities=30%  Similarity=0.243  Sum_probs=30.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++++|+|+|.+|+++|..|++.|++|++.|+.
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~   37 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGK   37 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            467999999999999999999999999999974

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.93  E-value=0.049  Score=42.70  Aligned_cols=35  Identities=17%  Similarity=0.095  Sum_probs=31.2

Q ss_pred             CCCCCEEEECCCH-HHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGM-AVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~-~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...++|+|||+|- +|..+|..|.++|.+|+++.+.
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            4678999999995 7999999999999999999975

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.88  E-value=0.043  Score=46.95  Aligned_cols=32  Identities=22%  Similarity=0.439  Sum_probs=29.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+|.|||+|..|...|+.|+.+|+ +|+++|..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~   34 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVV   34 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            369999999999999999999887 89999974

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.86  E-value=0.043  Score=40.91  Aligned_cols=33  Identities=36%  Similarity=0.409  Sum_probs=29.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      +.+|+|||+|-.|..+|..|++.|. +++|+|.+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            4689999999999999999999998 69999975

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.84  E-value=0.055  Score=43.46  Aligned_cols=34  Identities=26%  Similarity=0.215  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++++|+|.|-.|..+|..|.+.|++|+++|..
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4678999999999999999999999999999975

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.82  E-value=0.036  Score=49.09  Aligned_cols=31  Identities=26%  Similarity=0.313  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|+.+|..|++.|++|+++|+.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~   32 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDID   32 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECC
Confidence            5899999999999999999999999999985

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.82  E-value=0.056  Score=46.30  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||+|..|...|..|++.|++|+++++.
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~   36 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKGVPVRLWARR   36 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            6999999999999999999999999999985

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.81  E-value=0.043  Score=50.21  Aligned_cols=33  Identities=21%  Similarity=0.254  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      -++|.|||+|.-|...|..|++.|++|+++|+.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~   37 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIR   37 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            356999999999999999999999999999975

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.80  E-value=0.045  Score=46.82  Aligned_cols=31  Identities=23%  Similarity=0.413  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||+|..|.+.|..|++.|++|+++++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~   32 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRN   32 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            4899999999999999999999999999984

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.78  E-value=0.053  Score=48.38  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|+|.|.+|+++|..|+++|+.|+++|..
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~   37 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAE   37 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467999999999999999999999999999975

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.77  E-value=0.051  Score=48.56  Aligned_cols=34  Identities=21%  Similarity=0.280  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|+|.|+.|+.+|..|...|.+|+++|..
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d  234 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVD  234 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4678999999999999999999999999999875

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.73  E-value=0.05  Score=46.07  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=29.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||+|..|...|..|++.|++|+++++.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~   33 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD   33 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            5999999999999999999999999999985

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.72  E-value=0.054  Score=49.58  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|.|||+|.-|...|..|++.|+.|+++|+.
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~   39 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDAR   39 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            467999999999999999999999999999975

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.67  E-value=0.054  Score=49.63  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +..+|+|||+|++||.++..+...|..|+++|..
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~  197 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR  197 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4678999999999999999999999999999974

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.67  E-value=0.057  Score=41.63  Aligned_cols=31  Identities=32%  Similarity=0.372  Sum_probs=27.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||-|..|...|..|.++|++|.+||+.
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~   33 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRS   33 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred             EEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence            6899999999999999999999999999985

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.60  E-value=0.033  Score=48.89  Aligned_cols=36  Identities=22%  Similarity=0.409  Sum_probs=31.0

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           59 PISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        59 ~~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      |....+||+|||||-+|.-+|..|+---..|+++|=
T Consensus       350 PLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF  385 (520)
T COG3634         350 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF  385 (520)
T ss_pred             cccCCceEEEECCCcchHHHHHhHHhhhheeeeeec
Confidence            456789999999999999999999866567999884

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.60  E-value=0.048  Score=49.23  Aligned_cols=33  Identities=15%  Similarity=-0.034  Sum_probs=30.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|+|.|.+|.++|..|.++|.+|++.|..
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~   40 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFC   40 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence            567999999999999999999999999999963

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.59  E-value=0.045  Score=49.33  Aligned_cols=36  Identities=33%  Similarity=0.292  Sum_probs=32.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      .++|+|+|-|.+|+++|..|.++|..|+++|.. +..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~-~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDR-PAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCC-CCc
Confidence            678999999999999999999999999999965 444

>PRK04148 hypothetical protein; Provisional

Probab=94.58  E-value=0.043  Score=41.60  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=29.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++++||.| .|...|..|++.|++|+.+|.+
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~   48 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDIN   48 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECC
Confidence            4679999999 9999999999999999999976

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.55  E-value=0.067  Score=45.55  Aligned_cols=32  Identities=19%  Similarity=0.190  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||+|..|.+.|..|.+.|++|+++++.
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~   36 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRR   36 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46999999999999999999999999999985

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.52  E-value=0.064  Score=48.87  Aligned_cols=32  Identities=31%  Similarity=0.362  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||+|..|...|..|+++|++|+++|+.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~   36 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPH   36 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            46999999999999999999999999999975

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.52  E-value=0.059  Score=46.06  Aligned_cols=31  Identities=29%  Similarity=0.404  Sum_probs=28.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRG--VKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~   95 (189)
                      +|.|||+|..|+++|+.|+.+|  ..+.++|..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~   34 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN   34 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            5999999999999999999999  479999986

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=94.45  E-value=0.084  Score=50.31  Aligned_cols=34  Identities=15%  Similarity=0.236  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .-++|.|||+|..|...|..++..|++|+++|..
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~  345 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDIN  345 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCC
Confidence            4567999999999999999999999999999975

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=94.44  E-value=0.074  Score=45.29  Aligned_cols=34  Identities=21%  Similarity=0.183  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++++|||.|.+|+.++..|.+.|.+|+++++.
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~  184 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARK  184 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4688999999999999999999999999999985

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.43  E-value=0.065  Score=48.43  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|.|+|.|.+|+++|..|.++|++|+++|+.
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~   47 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN   47 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            4567999999999999999999999999999974

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.40  E-value=0.056  Score=47.87  Aligned_cols=31  Identities=23%  Similarity=0.356  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..||..|..|++.|++|+.+|..
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid   32 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDID   32 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence            5899999999999999999999999999964

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.38  E-value=0.097  Score=37.51  Aligned_cols=30  Identities=33%  Similarity=0.336  Sum_probs=27.2

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           66 VKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        66 v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      |+|+|.|..|...+..|.+.+.+|+++|..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d   30 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRD   30 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            689999999999999999988899999986

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=94.38  E-value=0.074  Score=45.04  Aligned_cols=34  Identities=35%  Similarity=0.372  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++|+|||+|-+|.++|+.|++.|. +|+|+++.
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~  160 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD  160 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35789999999999999999999997 79999985

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=94.35  E-value=0.055  Score=49.26  Aligned_cols=35  Identities=26%  Similarity=0.356  Sum_probs=31.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...++|+|||||-||+-+|...++.|.+.+++-..
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            45689999999999999999999999998888764

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.32  E-value=0.058  Score=51.38  Aligned_cols=33  Identities=18%  Similarity=0.274  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      -++|+|||+|..|...|..++..|++|+++|..
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~  345 (715)
T PRK11730        313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDIN  345 (715)
T ss_pred             cceEEEECCchhHHHHHHHHHhCCCeEEEEeCC
Confidence            467999999999999999999999999999975

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.32  E-value=0.24  Score=44.75  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=30.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++++|||+|..|+-+|..+.+.|. +|+|+++.
T Consensus       281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~  315 (467)
T TIGR01318       281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRR  315 (467)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEec
Confidence            46789999999999999999999995 79999974

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=94.32  E-value=0.078  Score=46.07  Aligned_cols=34  Identities=32%  Similarity=0.391  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|.+
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45789999999999999999999998 79999975

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=94.29  E-value=0.32  Score=48.01  Aligned_cols=34  Identities=12%  Similarity=0.159  Sum_probs=30.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++|+|||+|+.|+.+|..|++.|. .|+|+|..
T Consensus       316 ~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~  350 (985)
T TIGR01372       316 PGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR  350 (985)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccC
Confidence            35789999999999999999999995 58899875

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.26  E-value=0.16  Score=47.80  Aligned_cols=34  Identities=18%  Similarity=0.340  Sum_probs=29.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++|+|||+|..|+-+|..+.+.|. +|+++.+.
T Consensus       467 ~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~  501 (654)
T PRK12769        467 AGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRR  501 (654)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEec
Confidence            46789999999999999999999996 69988864

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=94.25  E-value=0.071  Score=50.92  Aligned_cols=35  Identities=17%  Similarity=0.313  Sum_probs=31.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~   95 (189)
                      ...++|+|||||..|+-+|..|.+.|.+ |+|+++.
T Consensus       568 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~  603 (752)
T PRK12778        568 KFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR  603 (752)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence            3568899999999999999999999987 9999874

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.12  E-value=0.074  Score=44.61  Aligned_cols=31  Identities=19%  Similarity=0.164  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|.+.|..|.++|++|+++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~   32 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR   32 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999999999999999999999975

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=94.10  E-value=0.09  Score=44.82  Aligned_cols=31  Identities=29%  Similarity=0.370  Sum_probs=28.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRG--VKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~   95 (189)
                      +|+|||+|-.|.++|+.|+.+|  ..+.++|+.
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~   34 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN   34 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            6999999999999999999999  479999985

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.08  E-value=0.093  Score=44.54  Aligned_cols=34  Identities=18%  Similarity=0.173  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++++|||.|..|..+|..|...|.+|+++++.
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~  183 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARS  183 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4678999999999999999999999999999986

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=94.07  E-value=0.31  Score=44.09  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=27.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      .+.++|||+|++|..|+.+|.+.|.  +++++-++
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~  108 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKRE  108 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEecc
Confidence            5789999999999999999999985  46666544

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=94.03  E-value=0.053  Score=46.46  Aligned_cols=31  Identities=29%  Similarity=0.431  Sum_probs=26.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC-------CeEEEEe
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG-------VKSNVFD   93 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g-------~~v~v~e   93 (189)
                      ..+|+|||+|..||+.|+.+.+.+       .+|+|+.
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~   40 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVIS   40 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEec
Confidence            457999999999999998888854       4688885

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.94  E-value=0.088  Score=46.70  Aligned_cols=33  Identities=24%  Similarity=0.205  Sum_probs=30.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|.|||-|.+|+++|..|.++|++|+++|..
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~   35 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKS   35 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357999999999999999999999999999975

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=93.93  E-value=0.084  Score=44.40  Aligned_cols=31  Identities=29%  Similarity=0.425  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|...|..|++.|++|+++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~   31 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIG   31 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCC
Confidence            4899999999999999999999999999985

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.87  E-value=0.1  Score=46.55  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=32.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...++|+|||.|+.|+.+|..|...|.+|+++|..
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~d  227 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVD  227 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCC
Confidence            35788999999999999999999999999999875

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=93.86  E-value=0.088  Score=41.14  Aligned_cols=35  Identities=23%  Similarity=0.245  Sum_probs=28.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+.++|+|=|..|-.+|..|+..|.+|+|.|.+
T Consensus        21 l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~D   55 (162)
T PF00670_consen   21 LAGKRVVVIGYGKVGKGIARALRGLGARVTVTEID   55 (162)
T ss_dssp             -TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SS
T ss_pred             eCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECC
Confidence            45788999999999999999999999999999985

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=93.85  E-value=0.093  Score=50.20  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .-++|.|||+|..|...|..++..|++|+++|..
T Consensus       334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~  367 (737)
T TIGR02441       334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDAT  367 (737)
T ss_pred             cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCC
Confidence            4467999999999999999999999999999975

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.85  E-value=0.1  Score=42.67  Aligned_cols=34  Identities=32%  Similarity=0.269  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCe---EEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVK---SNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~---v~v~e~~   95 (189)
                      ...+++|+|+|-+|..+|..|.+.|.+   +.|+|+.
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            456899999999999999999999975   9999985

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=93.80  E-value=0.94  Score=39.30  Aligned_cols=28  Identities=18%  Similarity=0.189  Sum_probs=24.8

Q ss_pred             CcEEEeCceeEEEEEeCCeEEEEeCCee
Q 041557          158 KVNVVRTCWISNLEPFNGMWYLGENGKT  185 (189)
Q Consensus       158 ~v~v~~~t~V~~i~~~~~~w~l~~~~~~  185 (189)
                      |+++++++.|++|+.+++.|.|.+.++.
T Consensus       148 G~~i~~~~~V~~i~~~~~~~~v~t~~g~  175 (381)
T TIGR03197       148 RLTLHFNTEITSLERDGEGWQLLDANGE  175 (381)
T ss_pred             CcEEEeCCEEEEEEEcCCeEEEEeCCCC
Confidence            8999999999999988888999877665

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=93.80  E-value=0.076  Score=47.67  Aligned_cols=34  Identities=21%  Similarity=0.133  Sum_probs=30.8

Q ss_pred             CCCCEEEECCCHHHHH-HHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLA-CALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~-~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|.|||.|-+|++ +|..|.++|++|++.|..
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~   40 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLK   40 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCC
Confidence            3467999999999999 699999999999999975

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.79  E-value=0.089  Score=47.42  Aligned_cols=33  Identities=15%  Similarity=0.187  Sum_probs=29.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+++|+|+|.|.+|.++|..|. +|.+|+++|..
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~   37 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDL   37 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHh-CCCEEEEECCC
Confidence            4678999999999999999998 49999999963

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=93.75  E-value=0.16  Score=34.89  Aligned_cols=33  Identities=24%  Similarity=0.250  Sum_probs=29.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEec
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDM   94 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~   94 (189)
                      ..++++|+|.|-.|..++..|.+. +.++.++++
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            457899999999999999999998 578888886

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.73  E-value=0.091  Score=47.68  Aligned_cols=33  Identities=30%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|.|+|.|.+|+++|..|.++|++|.++|..
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~   39 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGARLRVADTR   39 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCC
Confidence            467999999999999999999999999999964

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=93.68  E-value=0.13  Score=44.74  Aligned_cols=34  Identities=38%  Similarity=0.426  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...+|+|||+|-.|..+|..|++.|. +++|+|.+
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45789999999999999999999998 89999974

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=93.67  E-value=0.16  Score=43.79  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=30.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..+|+|||+|-.|..+|+.|+..|+ ++.|+|..
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~   39 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV   39 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            4679999999999999999999996 89999975

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.64  E-value=0.14  Score=43.16  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...+|+|||.|-.|..+|..|++.|. +++|+|.+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46789999999999999999999994 79999964

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.64  E-value=0.15  Score=40.99  Aligned_cols=34  Identities=38%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...+|+|||.|-.|..+|..|++.|. +++|+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            46789999999999999999999997 79999975

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=93.63  E-value=0.14  Score=40.41  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++++|+|+ |..|..+|..|++.|.+|+++.+.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4578999997 999999999999999999999875

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.62  E-value=0.097  Score=46.76  Aligned_cols=47  Identities=17%  Similarity=0.179  Sum_probs=42.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI  108 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~  108 (189)
                      +...||+|||-|..=...|...++.|.+|+=+|.+ +..||.|++...
T Consensus         6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn-~yYGg~waSfSm   52 (547)
T KOG4405|consen    6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSN-EYYGGNWASFSM   52 (547)
T ss_pred             chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCc-cccCCcccceee
Confidence            45789999999999999998899999999999997 999999987554

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.61  E-value=0.11  Score=45.99  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~   95 (189)
                      .+|+|||+|-.|..+|+.|+++| .+|+|.+|.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            46999999999999999999999 899999985

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.60  E-value=0.13  Score=43.59  Aligned_cols=32  Identities=25%  Similarity=0.324  Sum_probs=29.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+|+|||+|..|...|+.|+..|+ .|.++|..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~   35 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIV   35 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECC
Confidence            479999999999999999999876 89999975

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=93.59  E-value=0.13  Score=42.95  Aligned_cols=34  Identities=35%  Similarity=0.317  Sum_probs=30.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++++|+|+|-+|.+++..|++.|.+|+++++.
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~  149 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRT  149 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3567999999999999999999999999999875

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.58  E-value=0.1  Score=46.25  Aligned_cols=30  Identities=20%  Similarity=0.286  Sum_probs=27.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|+.+|..|+. |++|+++|.+
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d   31 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDIL   31 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECC
Confidence            48999999999999988885 9999999974

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=93.50  E-value=0.15  Score=40.05  Aligned_cols=31  Identities=29%  Similarity=0.350  Sum_probs=28.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVK-SNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~   95 (189)
                      +|+|||+|-.|...|..|++.|.. ++|+|.+
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            589999999999999999999985 9999975

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=93.40  E-value=0.15  Score=43.27  Aligned_cols=34  Identities=24%  Similarity=0.427  Sum_probs=30.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~   95 (189)
                      ..+.++|+|+|-+|.++|+.|++.|.+ |+|+.+.
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~  159 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK  159 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            457899999999999999999999986 9999885

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=93.39  E-value=0.12  Score=50.86  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||||..|+-+|..+.+.|.+|+++.+.
T Consensus       446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr  479 (944)
T PRK12779        446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR  479 (944)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence            5689999999999999999999999999999763

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=93.38  E-value=0.17  Score=37.99  Aligned_cols=34  Identities=29%  Similarity=0.340  Sum_probs=30.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~   95 (189)
                      ..++++|||+|..|...|..|.+.| ..|+++++.
T Consensus        18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~   52 (155)
T cd01065          18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT   52 (155)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            3567999999999999999999996 789999875

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.38  E-value=0.14  Score=46.97  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +..+|+|+|+|..|+.++..+...|..|+++|..
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~  196 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR  196 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999999999999999999999999999975

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.37  E-value=0.11  Score=49.49  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=30.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHH-HcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLD-KRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~-~~g~~v~v~e~~   95 (189)
                      .-++|+|||+|..|...|..++ ..|++|+++|..
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~  342 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDIN  342 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCC
Confidence            3467999999999999999999 889999999975

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.36  E-value=0.17  Score=37.86  Aligned_cols=31  Identities=32%  Similarity=0.425  Sum_probs=28.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      +|+|||.|-.|..+|..|.+.|+ +++|+|.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999998 69999975

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=93.32  E-value=0.15  Score=41.25  Aligned_cols=31  Identities=29%  Similarity=0.312  Sum_probs=28.5

Q ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.||| +|..|.++|..|.+.|++|+++++.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~   33 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD   33 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence            489997 7999999999999999999999875

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=93.31  E-value=0.14  Score=45.89  Aligned_cols=34  Identities=26%  Similarity=0.324  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|+|.|..|..+|..|...|.+|+++|..
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~d  244 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVD  244 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5778999999999999999999999999999975

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=93.28  E-value=0.17  Score=40.96  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~   95 (189)
                      ...+|+|||+|-.|..+|..|++.|.. ++|+|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            467899999999999999999999985 9999975

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=93.20  E-value=0.17  Score=42.94  Aligned_cols=33  Identities=21%  Similarity=0.179  Sum_probs=29.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      ..+|.|||.|..|.+.|..|.+.|+  .|+++++.
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~   40 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS   40 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            3579999999999999999999995  89999875

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=93.12  E-value=0.15  Score=43.25  Aligned_cols=31  Identities=32%  Similarity=0.379  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|...|..|+++|++|++|++.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~   33 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVN   33 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            5999999999999999999999999999985

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=93.12  E-value=0.13  Score=44.16  Aligned_cols=33  Identities=21%  Similarity=0.243  Sum_probs=30.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|.|||+|.-|...|..++..|++|+++|..
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence            367999999999999999999978999999975

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=93.12  E-value=0.13  Score=48.84  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=29.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHH-HcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLD-KRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~-~~g~~v~v~e~~   95 (189)
                      -++|.|||+|..|...|..++ +.|++|+++|..
T Consensus       304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~  337 (699)
T TIGR02440       304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDIN  337 (699)
T ss_pred             ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            357999999999999999988 589999999975

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=93.01  E-value=0.12  Score=39.19  Aligned_cols=30  Identities=27%  Similarity=0.249  Sum_probs=26.7

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           66 VKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        66 v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++|+|+|..+...+..+...|++|+|+|..
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r   30 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPR   30 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            589999999999999999999999999975

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.01  E-value=0.14  Score=45.96  Aligned_cols=33  Identities=27%  Similarity=0.252  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|.|||.|-+|+++|..|.++|++|.+.|..
T Consensus         9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~   41 (460)
T PRK01390          9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDN   41 (460)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence            467999999999999999999999999999964

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=92.99  E-value=0.56  Score=46.48  Aligned_cols=34  Identities=29%  Similarity=0.381  Sum_probs=29.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc-CC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR-GV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~-~v~v~e~~   95 (189)
                      ..++|+|||||..|+-+|..+.+. |. +|+|+++.
T Consensus       665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr  700 (1012)
T TIGR03315       665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR  700 (1012)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEcc
Confidence            467899999999999999998876 75 79999875

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=92.98  E-value=0.16  Score=44.29  Aligned_cols=30  Identities=17%  Similarity=0.192  Sum_probs=28.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC--------CeEEEEec
Q 041557           65 HVKIIGGGMAVLACALRLDKRG--------VKSNVFDM   94 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g--------~~v~v~e~   94 (189)
                      +|.|||+|.-|.++|..|+++|        ++|+++.+
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~   38 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVF   38 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEe
Confidence            4899999999999999999999        99999987

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=92.96  E-value=0.12  Score=46.64  Aligned_cols=34  Identities=15%  Similarity=0.092  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|.+|+-.|..|.+.+.+|+++.+.
T Consensus       203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~  236 (461)
T PLN02172        203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRA  236 (461)
T ss_pred             CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence            5688999999999999999999999999999874

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=92.95  E-value=0.19  Score=41.27  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=30.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      ..++|+|||||..++.-+..|.+.|.+|+|+-.
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap   56 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK   56 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            467899999999999999999999999999954

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=92.94  E-value=0.22  Score=42.86  Aligned_cols=33  Identities=21%  Similarity=0.404  Sum_probs=30.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +.+|+|||+|-.|.++|+.|...|+  .+.|||..
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~   40 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN   40 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            4689999999999999999999997  79999975

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=92.89  E-value=0.16  Score=43.06  Aligned_cols=30  Identities=23%  Similarity=0.294  Sum_probs=27.7

Q ss_pred             EEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           66 VKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        66 v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      |.|||+|..|..+|+.|+.+|+ .|+++|..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~   31 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            5899999999999999999887 99999975

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=92.88  E-value=0.031  Score=47.25  Aligned_cols=30  Identities=23%  Similarity=0.471  Sum_probs=25.5

Q ss_pred             EEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557           66 VKIIGGGMAVLACALRLDKRG--VKSNVFDMG   95 (189)
Q Consensus        66 v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~   95 (189)
                      .+|+|||++|.+||.+|+...  .+++|+-..
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitas   33 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITAS   33 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence            689999999999999999875  468887764

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=92.86  E-value=0.2  Score=42.08  Aligned_cols=34  Identities=24%  Similarity=0.305  Sum_probs=30.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~   95 (189)
                      ..++++|+|+|-+|.+++..|+..| .+|+|+.+.
T Consensus       122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~  156 (278)
T PRK00258        122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRT  156 (278)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4578999999999999999999999 689999875

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=92.86  E-value=0.18  Score=44.39  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=31.1

Q ss_pred             CCCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|+||| .|..|...|..|.++|+.|+++++.
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~  131 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD  131 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence            456799999 8999999999999999999999975

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.84  E-value=0.65  Score=41.45  Aligned_cols=37  Identities=27%  Similarity=0.256  Sum_probs=31.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMGNPD   98 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~~~~   98 (189)
                      ....|++.||-||+-|+.|..|.+.+ .+++.+|+. +.
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerk-p~   40 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERK-PD   40 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecC-CC
Confidence            34678999999999999999999886 779999985 54

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=92.84  E-value=0.19  Score=41.79  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +..+++|+|+|..+..+|..+...|++|+|+|..
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R  132 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSR  132 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCC
Confidence            4578999999999999999999999999999864

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=92.79  E-value=0.2  Score=44.52  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+++|+|.|..|..+|..|.+.|+.|+++|++
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~  263 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERD  263 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            4578999999999999999999999999999985

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.77  E-value=0.19  Score=44.93  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=30.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .--|+|||-|-+|+++|..|.++|++|++.|..
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~   38 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSR   38 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCC
Confidence            446999999999999999999999999999974

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=92.71  E-value=0.23  Score=41.03  Aligned_cols=34  Identities=26%  Similarity=0.307  Sum_probs=30.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...+|+|||+|-.|..+|..|++.|. +++|+|.+
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45789999999999999999999997 68888875

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=92.68  E-value=0.16  Score=45.66  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=32.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...|+|+|||+|.+|...|-.|++.|.+|+++-+.
T Consensus       173 ~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs  207 (443)
T COG2072         173 LRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRS  207 (443)
T ss_pred             cCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecC
Confidence            36799999999999999999999999999999885

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=92.67  E-value=0.14  Score=42.45  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=32.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+.|.|||+|.-|...|.-.+..|+.|.++|++
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~   43 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDAN   43 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCC
Confidence            34577999999999999999999999999999986

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=92.65  E-value=0.18  Score=45.92  Aligned_cols=31  Identities=16%  Similarity=0.205  Sum_probs=27.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRG--VKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~   95 (189)
                      +|+|||.|..|+.+|..|+++|  ++|+.+|.+
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~   35 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS   35 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence            4999999999999999999985  789999864

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=92.59  E-value=0.27  Score=37.21  Aligned_cols=31  Identities=32%  Similarity=0.472  Sum_probs=28.0

Q ss_pred             CEEEECC-CHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           65 HVKIIGG-GMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~-G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +|.|||+ |..|.++|+.|...++  ++.++|..
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~   35 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN   35 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence            5899999 9999999999999975  69999975

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=92.53  E-value=0.19  Score=42.18  Aligned_cols=31  Identities=29%  Similarity=0.298  Sum_probs=29.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|...|..|++.|++|+++++.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~   34 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRN   34 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            6999999999999999999999999999975

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=92.52  E-value=0.2  Score=42.51  Aligned_cols=31  Identities=29%  Similarity=0.342  Sum_probs=29.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|...|..|.++|++|.++++.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~   32 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHD   32 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999999999999999999999986

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=92.48  E-value=0.25  Score=40.95  Aligned_cols=34  Identities=24%  Similarity=0.272  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...+|+|||.|-.|..+|..|++.|. +++|+|.+
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46789999999999999999999997 68898864

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=92.43  E-value=0.26  Score=40.18  Aligned_cols=34  Identities=29%  Similarity=0.319  Sum_probs=30.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...+|+|||.|-.|..+|..|++.|. +++|+|.+
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45789999999999999999999997 68888864

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02494 adenosylhomocysteinase

Probab=92.35  E-value=0.25  Score=44.94  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.|+|+|.|..|..+|..|...|.+|+++|..
T Consensus       253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~d  286 (477)
T PLN02494        253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEID  286 (477)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4688999999999999999999999999999875

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=92.33  E-value=0.21  Score=44.36  Aligned_cols=31  Identities=23%  Similarity=0.300  Sum_probs=29.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+|+|+|..|..+|..|.+.|++|+++|++
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~   32 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTD   32 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            5999999999999999999999999999975

>PRK08017 oxidoreductase; Provisional

Probab=92.30  E-value=0.25  Score=39.85  Aligned_cols=32  Identities=28%  Similarity=0.215  Sum_probs=29.3

Q ss_pred             CCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +.++|.|+ |..|..+|..|+++|++|+++.+.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~   35 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRK   35 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            46999998 999999999999999999999875

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=92.30  E-value=0.2  Score=44.42  Aligned_cols=31  Identities=32%  Similarity=0.384  Sum_probs=28.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||-|-+|+++|..|.++|++|++.|..
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~   31 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLK   31 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999964

>PTZ00117 malate dehydrogenase; Provisional

Probab=92.30  E-value=0.28  Score=42.18  Aligned_cols=34  Identities=18%  Similarity=0.271  Sum_probs=30.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~   95 (189)
                      ...+|+|||+|-.|.++|+.|+..| ..+.|+|..
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~   38 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI   38 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence            3467999999999999999999999 589999975

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=92.29  E-value=0.25  Score=42.41  Aligned_cols=33  Identities=24%  Similarity=0.490  Sum_probs=29.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +.+|+|||+|-.|.++|+.|...+.  .+.|||..
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~   37 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV   37 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            4589999999999999999999886  58999975

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=92.29  E-value=0.23  Score=45.78  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=30.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.++|+|+|-+|.++|+.|++.|.+|+++.+.
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~  411 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGARVVIANRT  411 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4578999999999999999999999999999874

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=92.28  E-value=0.26  Score=41.76  Aligned_cols=33  Identities=33%  Similarity=0.300  Sum_probs=29.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .++++|+|+|-++.++++.|++.|. +++|++|.
T Consensus       127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~  160 (283)
T PRK14027        127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            5789999999999999999999997 68899875

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=92.27  E-value=0.27  Score=45.32  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=31.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+++|+|.|..|...|..|.++|++|+++|++
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d  449 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETS  449 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECC
Confidence            468999999999999999999999999999986

>PRK08328 hypothetical protein; Provisional

Probab=92.22  E-value=0.29  Score=40.14  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=30.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...+|+|||+|-.|..+|..|++.|. +++|+|.+
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45789999999999999999999997 58888864

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=92.18  E-value=0.28  Score=41.43  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=30.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++++|||+|=++.++++.|++.|. +|+|+.|.
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt  158 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN  158 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35789999999999999999999997 69999875

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=92.10  E-value=0.15  Score=44.13  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..-+|+|||+|.+|+-+|.-+.-.|-+|+|+|.+
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n  200 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN  200 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence            4567999999999999999999999999999975

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=92.07  E-value=0.26  Score=43.96  Aligned_cols=34  Identities=21%  Similarity=0.171  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~   95 (189)
                      ...+|+|||+|..|..+|..|...| .+|+++++.
T Consensus       179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs  213 (417)
T TIGR01035       179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT  213 (417)
T ss_pred             cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4578999999999999999999999 689999875

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=92.01  E-value=0.26  Score=42.75  Aligned_cols=32  Identities=22%  Similarity=0.283  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||+|--|.+.|..|+++|+.|.++-+.
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~   33 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRD   33 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecC
Confidence            36999999999999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	8e-10
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	1e-06
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	2e-06
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	7e-06
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	1e-05
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	1e-04
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	1e-04
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	3e-04
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	4e-04
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	5e-04
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	6e-04

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 64  PHVKIIGGGMAVLACALRLDKRGVKS---NVFDMGNPDLEGRMGTRMIGRQP-LIFDHAT 119
             V I+G GM    CA  L ++        V+D    D  GRM T      P    D   
Sbjct: 2   AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKA-DDSGGRMTTACSPHNPQCTADLGA 60

Query: 120 QFFTVNDSRF 129
           Q+ T      
Sbjct: 61  QYITCTPHYA 70

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 58  APISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDH 117
            P ++  +V ++GGG++ LA A  L  RG  + + +  +  L G +GT  +     + + 
Sbjct: 11  MPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLE-SSARLGGAVGTHALA--GYLVEQ 67

Query: 118 ATQFFTVNDSRFGELVD 134
               F   +     L  
Sbjct: 68  GPNSFLDREPATRALAA 84

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 44.3 bits (104), Expect = 7e-06
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 61  SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQ 120
           SS   V +IG G++ LA A +L   G+   VF+       G++ +       LI+D    
Sbjct: 11  SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFE-AEGKAGGKLRSVSQD--GLIWDEGAN 67

Query: 121 FFTVNDSRFGELVD 134
             T ++     L+D
Sbjct: 68  TMTESEGDVTFLID 81

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 59  PISSNP-HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT-RMIGRQPLIFD 116
                P  + I+G G+A L     L + G    + +     + GR+ T      +P  F 
Sbjct: 39  NPPGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFA 98

Query: 117 HATQFFTVNDSRFGE 131
              Q+      R   
Sbjct: 99  DPAQYAEAGAMRLPS 113

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 62  SNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHAT 119
           S+  + I+GGG+  LA A   ++    +   + +     L G++ T          +   
Sbjct: 3   SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLE-AGERLGGKVATYRED--GFTIERGP 59

Query: 120 QFFTVNDSRFGELVD 134
             +        +L++
Sbjct: 60  DSYVARKHILTDLIE 74

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 13/82 (15%)

Query: 59  PISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE------GRMGTRMIGRQP 112
             S+  HV I+G GMA L+ A  L   G +  V       LE      GR+ T       
Sbjct: 29  ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTV-------LEASERPGGRVRTYRNEEAG 81

Query: 113 LIFDHATQFFTVNDSRFGELVD 134
              +              E + 
Sbjct: 82  WYANLGPMRLPEKHRIVREYIR 103

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFD 93
          S+ +V IIGGG   L  A  L + G+  +V++
Sbjct: 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYE 56

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 61 SSNPHVKIIGGGMAVLACALRLDKRGVKS 89
          +  P V ++G GM+ ++ A RL + G+  
Sbjct: 2  TVGPRVIVVGAGMSGISAAKRLSEAGITD 30

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 63  NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFF 122
            P + IIG G   L  A+RL + G K+      N    G   + +       +D      
Sbjct: 9   TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLD-ENGFTWDLGGHVI 67

Query: 123 TVNDSRFGELVD 134
             +   F +++D
Sbjct: 68  FSHYQYFDDVMD 79

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 60  ISSNPHVKIIGGGMAVLACALRLDKRGVKS-NVFDMGNPDLEGRMGTRMIGRQPLIFDHA 118
           IS +  + IIG G A LA  + L++ G     + +     + G+  +     +   ++  
Sbjct: 3   ISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILE-RTDHVGGKCHSPNYHGRR--YEMG 59

Query: 119 TQFFTVNDSRFGELVD 134
                 +     E++D
Sbjct: 60  AIMGVPSYDTIQEIMD 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.59
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.57
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.52
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.33
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.27
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.2
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.19
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.17
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.17
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.14
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.13
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.1
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.09
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.09
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.09
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.08
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.08
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.07
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.07
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.07
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.05
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.05
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.04
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.04
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.02
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.02
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.02
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.02
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.01
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.0
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.0
3dme_A	369	Conserved exported protein; structural genomics, P	99.0
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.99
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.99
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.98
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.98
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.98
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.98
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.97
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.96
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.96
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.96
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.96
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.96
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.95
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.95
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.94
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.94
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.92
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.91
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.91
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.9
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.9
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.9
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.89
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.88
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.88
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.87
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.87
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.87
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.86
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.86
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.85
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.84
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.84
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.84
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.83
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.83
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.83
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.82
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.81
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.8
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.8
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.8
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.8
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.79
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.79
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.79
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.79
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.79
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.77
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.75
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.75
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.75
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.73
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.72
3atr_A	453	Conserved archaeal protein; saturating double bond	98.71
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.71
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	98.7
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.7
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.7
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.7
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.69
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.68
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.66
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.64
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.6
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.57
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.56
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.55
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.5
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.47
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.47
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.46
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.45
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.45
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.44
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.43
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.42
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.41
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.41
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.4
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.4
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.39
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.38
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.37
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.37
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.37
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.36
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.36
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.35
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.34
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.33
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.32
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.32
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.31
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.31
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.3
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.3
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.3
4dna_A	463	Probable glutathione reductase; structural genomic	98.29
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.29
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.28
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.28
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.28
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.28
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.27
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.26
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.26
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.26
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.26
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.26
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.25
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.25
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.24
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.24
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.24
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.23
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.22
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.22
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.21
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.21
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.2
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.19
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.19
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.19
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.19
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.18
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.18
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.18
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.17
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.17
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.17
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.17
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.15
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.14
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.14
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.12
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.12
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.12
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.1
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.1
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.1
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.1
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.1
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.09
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.09
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.09
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.09
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.08
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.07
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.06
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.06
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.06
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.06
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.06
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.06
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.05
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.05
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.04
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.04
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.01
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.01
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.0
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.99
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.94
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.93
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.93
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.92
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.92
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.91
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.9
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.9
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.9
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.9
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.9
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.89
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.88
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.88
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.88
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.87
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.86
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.85
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.85
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.85
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.84
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.84
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.84
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.84
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.83
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.83
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.83
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.83
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.83
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.82
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.82
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.81
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.8
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.79
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.79
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.78
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.77
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.77
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.76
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.73
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.73
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.73
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.73
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.68
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.66
4dna_A	463	Probable glutathione reductase; structural genomic	97.59
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.59
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.56
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.56
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.55
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.53
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.53
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.48
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.47
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.44
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.4
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.39
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.38
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.36
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.35
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.32
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.31
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.29
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.26
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.25
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.24
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.24
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.22
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.21
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.18
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.14
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.09
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.08
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.06
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.01
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.99
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.99
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.97
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.9
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.9
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.88
3r9u_A	315	Thioredoxin reductase; structural genomics, center	96.88
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.82
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.79
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	96.76
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.75
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.72
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.69
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.56
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.55
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.43
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.4
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.38
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.3
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.26
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.06
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.06
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	95.97
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	95.94
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	95.91
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	95.91
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.89
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.87
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.8
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	95.78
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.76
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	95.76
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	95.75
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.74
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.72
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.72
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.72
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.67
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.63
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.63
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.62
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.6
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.57
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.52
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.51
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.48
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.47
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.44
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	95.42
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.39
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.39
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.37
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.35
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.3
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.29
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.28
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.27
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	95.26
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.24
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.22
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.19
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.19
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.18
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.16
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.13
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.13
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.1
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.08
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.08
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.02
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	95.0
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.99
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.98
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	94.98
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	94.97
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.94
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.94
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.92
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	94.91
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.9
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.84
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	94.82
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.81
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	94.8
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	94.8
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.78
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.74
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.73
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	94.71
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.67
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.62
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	94.61
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	94.57
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.54
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	94.53
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.52
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.47
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	94.46
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	94.45
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	94.44
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	94.43
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	94.41
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.38
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.35
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.32
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.32
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	94.32
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	94.3
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.29
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.27
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.27
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.26
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	94.25
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	94.24
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	94.23
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	94.17
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	94.17
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	94.16
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	94.16
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.16
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.15
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	94.14
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.12
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.1
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.1
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	94.07
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	94.07
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	94.01
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	93.99
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	93.98
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	93.97
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.94
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	93.94
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	93.94
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	93.94
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.89
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	93.87
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.85
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	93.83
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	93.81
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.79
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	93.79
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	93.78
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	93.77
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	93.72
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	93.7
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	93.7
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.65
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	93.64
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	93.62
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	93.61
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	93.6
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	93.59
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	93.55
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.54
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	93.52
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	93.52
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	93.52
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	93.51
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	93.5
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.47
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	93.44
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	93.44
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	93.43
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	93.43
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	93.41
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	93.39
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	93.38
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	93.38
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	93.35
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	93.33
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	93.32
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	93.29
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	93.28
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	93.27
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	93.23
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	93.22
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	93.21
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	93.2
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	93.18
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	93.14
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	93.07
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	93.07
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	93.07
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	93.05
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	93.04
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	93.02
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	92.99
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	92.97
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	92.92
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	92.92
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	92.92
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	92.9
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	92.86
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	92.82
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	92.81
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	92.81
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	92.75
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	92.71
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	92.69
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	92.62
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	92.62
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	92.58
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	92.56
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	92.52
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	92.52
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	92.49
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	92.39
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	92.34
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	92.34
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	92.31
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	92.3
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	92.29
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	92.21
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	92.17
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	92.15
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	92.14
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	92.13
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	92.08
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	92.05
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	91.99
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	91.98
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	91.96
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	91.94
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	91.88
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.86
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	91.86
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	91.86

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.57  E-value=1.6e-14  Score=121.67  Aligned_cols=121  Identities=20%  Similarity=0.231  Sum_probs=91.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHH---cCCeEEEEecCCCCCCcCceeeeeCC-cceeeecceeeEeeCCc---hhHHHHHHH
Q 041557           64 PHVKIIGGGMAVLACALRLDK---RGVKSNVFDMGNPDLEGRMGTRMIGR-QPLIFDHATQFFTVNDS---RFGELVDVC  136 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~---~g~~v~v~e~~~~~~gg~~~~~~~~~-~~~~~~~g~~~~~~~~~---~~~~~l~~~  136 (189)
                      +||+|||||++||++|+.|++   .|++|+|||+. +.+||++.+.+... ....++++..++.....   .+...++.|
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~-~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~   80 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKA-DDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDEL   80 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSS-SSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECC-CCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHH
Confidence            479999999999999999999   99999999998 99999998876532 23468889999887665   455666666


Q ss_pred             hhhhhhcC----------------------chHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557          137 WKVVLLLG----------------------YSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA  186 (189)
Q Consensus       137 ~~~~~~~~----------------------~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~  186 (189)
                      ...+.+..                      ...+.+.+... .+++|+++++|++|++++++|+|++.++..
T Consensus        81 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~-~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~  151 (342)
T 3qj4_A           81 LAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKE-SGAEVYFRHRVTQINLRDDKWEVSKQTGSP  151 (342)
T ss_dssp             HHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHH-HTCEEESSCCEEEEEECSSSEEEEESSSCC
T ss_pred             HhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHh-cCCEEEeCCEEEEEEEcCCEEEEEECCCCE
Confidence            55444321                      02234444321 168999999999999998999999877653

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.52  E-value=1.9e-13  Score=106.29  Aligned_cols=74  Identities=30%  Similarity=0.437  Sum_probs=62.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKV  139 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~  139 (189)
                      ..||+||||||+||++|+.|+++|++|+|||+. +.+||++.+.+....  .+|+|.+++......+......+...
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~-~~~GG~~~~~~~~~~--~~d~g~~~~~~~~~~~~~~~~~~~~~   75 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKS-RGSGGRMSSKRSDAG--ALDMGAQYFTARDRRFATAVKQWQAQ   75 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCGGGCEEEETTE--EEECSCCCBCCCSHHHHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC-CCCCCcccccccCCc--eeecCccccccCcHHHHHHHHHHHhc
Confidence            468999999999999999999999999999998 999999988877653  58889988888777776655554443

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.33  E-value=3.8e-13  Score=118.94  Aligned_cols=98  Identities=22%  Similarity=0.284  Sum_probs=76.2

Q ss_pred             cceeecccccCCCCCCCCCCC--CCCcCccccCC-CCcchhhHhhhhhhh----ccccccC-C-CCCCCCEEEECCCHHH
Q 041557            5 TSTIIKATSSQPKTNSTNAQK--PTCRNCRRGSS-YGSPRRSALKKTFTQ----KQFTFTA-P-ISSNPHVKIIGGGMAV   75 (189)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~--p~~~~c~r~~~-~~~~~~~~~~~~~~~----~~~~~~~-~-~~~~~~v~IiG~G~~G   75 (189)
                      |.+++..+.+.|...+..|++  ||+..|+++.. .+++.+..+++....    ..+.... + ....++|+|||||++|
T Consensus        55 A~~~~~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~~v~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~V~IIGgGpAG  134 (456)
T 2vdc_G           55 AYEVSQATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGVIGAGPAG  134 (456)
T ss_dssp             HHHHHHHHCSCHHHHHHHCCGGGSGGGGCGGGGSSSCSCCHHHHHHHHHHHHHHHTCCCCCCSCSSCCCCEEEECCSHHH
T ss_pred             HHHHHHhhCCCCccccccCCCCcchHHhcccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCCHHH
Confidence            445555666666666778999  99999999987 788888887776643    2232222 1 2357899999999999


Q ss_pred             HHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           76 LACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        76 l~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      |++|+.|+++|++|+|||+. +.+||.+
T Consensus       135 l~aA~~L~~~G~~V~v~e~~-~~~GG~l  161 (456)
T 2vdc_G          135 LAAAEELRAKGYEVHVYDRY-DRMGGLL  161 (456)
T ss_dssp             HHHHHHHHHHTCCEEEECSS-SSCSTHH
T ss_pred             HHHHHHHHHCCCeEEEEecc-CCCCCee
Confidence            99999999999999999997 8888764

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.27  E-value=4.4e-12  Score=111.51  Aligned_cols=72  Identities=21%  Similarity=0.270  Sum_probs=58.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHH
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDV  135 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~  135 (189)
                      ...||+|||||++||+||+.|+++ |++|+|||+. +.+||++.+..... .+.+|.|++++....+.+.+++.+
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~-~~~GG~~~T~~~~~-G~~~D~G~h~~~~~~~~v~~l~~e   81 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSN-ETPGGLASTDVTPE-GFLYDVGGHVIFSHYKYFDDCLDE   81 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESS-SSCCGGGCEEECTT-SCEEESSCCCCCCCBHHHHHHHHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECC-CCCcCCeeeEEecC-CEEEEeCceEecCCCHHHHHHHHH
Confidence            357899999999999999999985 9999999998 99999998754322 246899998887666666665554

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.20  E-value=6.5e-11  Score=98.51  Aligned_cols=105  Identities=14%  Similarity=0.207  Sum_probs=67.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEe-------eCCchh--HHHH
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFT-------VNDSRF--GELV  133 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~--~~~l  133 (189)
                      .++|+|||||++|+++|+.|+++|++|+|||+. +.+||.|...... .  .......+..       .....+  ...+
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~-~~~gg~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAE-ASPGGAWQHAWHS-L--HLFSPAGWSSIPGWPMPASQGPYPARAEV   78 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCS-SSSSGGGGGSCTT-C--BCSSCGGGSCCSSSCCCCCSSSSCBHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC-CCCCCcccCCCCC-c--EecCchhhhhCCCCCCCCCccCCCCHHHH
Confidence            368999999999999999999999999999997 8999987642110 0  0000000000       000000  0111


Q ss_pred             HHHhhhhhhcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEE-EEeCCe
Q 041557          134 DVCWKVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWY-LGENGK  184 (189)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~-l~~~~~  184 (189)
                      ..+.           .+.+..  .+++++++++|++++..++.|. |++.++
T Consensus        79 ~~~l-----------~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~v~~~~g  117 (357)
T 4a9w_A           79 LAYL-----------AQYEQK--YALPVLRPIRVQRVSHFGERLRVVARDGR  117 (357)
T ss_dssp             HHHH-----------HHHHHH--TTCCEECSCCEEEEEEETTEEEEEETTSC
T ss_pred             HHHH-----------HHHHHH--cCCEEEcCCEEEEEEECCCcEEEEEeCCC
Confidence            1111           111111  3789999999999999999999 887775

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.19  E-value=1.4e-11  Score=108.49  Aligned_cols=55  Identities=24%  Similarity=0.295  Sum_probs=39.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceee
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQF  121 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~  121 (189)
                      ++|+|||||++||+||+.|+++|++|+|||+. +.+||++.+...+++  .||.|+++
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~-~~~GG~~~t~~~~G~--~~D~G~~~   56 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQR-DKPGGRAYVYEDQGF--TFDAGPTV   56 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC--------CEEEETTE--EEECSCCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccC-CCCCCcEEEEEeCCE--EEecCcee
Confidence            57999999999999999999999999999997 999999988766542  35555443

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.17  E-value=4.1e-11  Score=104.80  Aligned_cols=75  Identities=23%  Similarity=0.430  Sum_probs=59.3

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHH
Q 041557           59 PISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVC  136 (189)
Q Consensus        59 ~~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~  136 (189)
                      |....++|+|||||++||++|+.|+++|++|+|||+. +.+||++.+...++  ..+|.|++++....+.+.++++++
T Consensus        12 ~~~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~-~~~GGr~~t~~~~g--~~~~~g~~~~~~~~~~~~~~~~~~   86 (478)
T 2ivd_A           12 PRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESS-ARLGGAVGTHALAG--YLVEQGPNSFLDREPATRALAAAL   86 (478)
T ss_dssp             -----CCEEEECCBHHHHHHHHHHHTTTCCEEEECSS-SSSBTTCCEEEETT--EEEESSCCCEETTCHHHHHHHHHT
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcC-CCCCceeeeeccCC--eeeecChhhhhhhhHHHHHHHHHc
Confidence            3445689999999999999999999999999999998 99999999887754  358889888876555555555543

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.17  E-value=1.3e-10  Score=101.52  Aligned_cols=117  Identities=17%  Similarity=0.177  Sum_probs=69.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce--------eeeeCCcceeeecceeeEeeCCchhHHH
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG--------TRMIGRQPLIFDHATQFFTVNDSRFGEL  132 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~  132 (189)
                      +..+||+|||||++||++|+.|+++|++|+|||+. +.+|+.+.        ......     + ...++..........
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~-~~~g~~~~~sGgg~~n~t~~~~-----~-~~~~~~~~~~~~~~~   97 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHA-RAPGEKIRISGGGRCNFTNIHA-----S-PRNFLSGNPHFCKSA   97 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCHHHHHSGGGTCEEEETTC-----S-GGGEEESSTTTTHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC-CCCCceeEEcCCCceeccCCCC-----C-HHHHhhcCHHHHHHH
Confidence            34679999999999999999999999999999997 87766531        111100     0 011111111111111


Q ss_pred             HHHH--------hhh-hhhc-----C------c-hHHHHHHhc--cCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557          133 VDVC--------WKV-VLLL-----G------Y-SKSQNLNIF--QTSKVNVVRTCWISNLEPFNGMWYLGENGK  184 (189)
Q Consensus       133 l~~~--------~~~-~~~~-----~------~-~~~~~~l~~--~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~  184 (189)
                      +..+        ... +...     +      . .++.+.+..  ...|++++++++|++|+.++++|.|.+.++
T Consensus        98 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g  172 (417)
T 3v76_A           98 LARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG  172 (417)
T ss_dssp             HHHSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE
T ss_pred             HHhcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc
Confidence            1111        111 1100     0      0 123333322  124899999999999999999999988876

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.14  E-value=8.1e-11  Score=101.43  Aligned_cols=59  Identities=17%  Similarity=0.282  Sum_probs=49.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEe
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFT  123 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~  123 (189)
                      ..++|+|||||++||++|+.|+++| ++|+|||+. +.+||++.+...++  ..+|.|++++.
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~-~~~GG~~~t~~~~G--~~~d~G~~~~~   64 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERT-DHVGGKCHSPNYHG--RRYEMGAIMGV   64 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSS-SCSSTTCCCCEETT--EECCSSCCCBC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECC-CCCCCcccccCCCC--cccccCceeec
Confidence            4578999999999999999999999 999999997 99999998876654  24666665554

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.13  E-value=9.5e-11  Score=96.87  Aligned_cols=102  Identities=21%  Similarity=0.220  Sum_probs=67.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||||++||++|+.|+++|++|+|||+. +.+||.+.... .... .++...    .......++... .     
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~~gG~~~~~~-~~~~-~~~~~~----~~~~~~~~~~~~-~-----   73 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESL-PQLGGQLSALY-PEKY-IYDVAG----FPKIRAQELINN-L-----   73 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCHHHHHHC-TTSE-ECCSTT----CSSEEHHHHHHH-H-----
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcC-CCCCceehhcC-CCce-EeccCC----CCCCCHHHHHHH-H-----
Confidence            368999999999999999999999999999998 89999884311 1100 011000    000011111111 1     


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCC-eEEEEeCCee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNG-MWYLGENGKT  185 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~-~w~l~~~~~~  185 (189)
                            .+.+..  .+++++++++|++++..++ .|.|.+.+++
T Consensus        74 ------~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~  109 (332)
T 3lzw_A           74 ------KEQMAK--FDQTICLEQAVESVEKQADGVFKLVTNEET  109 (332)
T ss_dssp             ------HHHHTT--SCCEEECSCCEEEEEECTTSCEEEEESSEE
T ss_pred             ------HHHHHH--hCCcEEccCEEEEEEECCCCcEEEEECCCE
Confidence                  111111  3789999999999998776 8999887764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.10  E-value=2.4e-10  Score=95.13  Aligned_cols=103  Identities=17%  Similarity=0.136  Sum_probs=67.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||||++|+++|+.|+++|++|+|||+. +.+||.+.... .. ...++...    .......++.+.+      
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~~gg~~~~~~-~~-~~~~~~~~----~~~~~~~~~~~~l------   71 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPL-PEPGGQLTALY-PE-KYIYDVAG----FPKVYAKDLVKGL------   71 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSCHHHHHTC-TT-SEECCSTT----CSSEEHHHHHHHH------
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC-CCCCCeeeccC-CC-ceeeccCC----CCCCCHHHHHHHH------
Confidence            468999999999999999999999999999997 88998874321 10 00011100    0000111111111      


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA  186 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~  186 (189)
                            .+.+..  .+++++++++|+.++.+++.|+|.+.++..
T Consensus        72 ------~~~~~~--~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~  107 (335)
T 2zbw_A           72 ------VEQVAP--FNPVYSLGERAETLEREGDLFKVTTSQGNA  107 (335)
T ss_dssp             ------HHHHGG--GCCEEEESCCEEEEEEETTEEEEEETTSCE
T ss_pred             ------HHHHHH--cCCEEEeCCEEEEEEECCCEEEEEECCCCE
Confidence                  111111  268999999999999888899998876543

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.09  E-value=1.7e-10  Score=102.40  Aligned_cols=70  Identities=21%  Similarity=0.287  Sum_probs=55.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHH
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVD  134 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~  134 (189)
                      .++|+|||||++||++|+.|+++|++|+|||+. +.+||++.+..... ...+|.|.+++......+.++++
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~-~~~GGr~~t~~~~~-g~~~d~G~~~~~~~~~~~~~l~~   73 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEAR-DRVGGRTYTLRNQK-VKYVDLGGSYVGPTQNRILRLAK   73 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSS-SSSBTTCCEECCTT-TSCEESSCCEECTTCHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCCceeecccCC-CcccccCceEecCCcHHHHHHHH
Confidence            468999999999999999999999999999997 99999998876641 13478888877654444444443

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.09  E-value=5.5e-10  Score=96.69  Aligned_cols=75  Identities=16%  Similarity=0.192  Sum_probs=55.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeC--------CcceeeecceeeEeeCCchhHHH
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIG--------RQPLIFDHATQFFTVNDSRFGEL  132 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~  132 (189)
                      ...++|+|||||++||++|+.|.++|++|+|||+..+.+||++.+.+..        .....++.|..++....+.+.++
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~~  121 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLTLAL  121 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHHHHH
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecchHHHHHHH
Confidence            4567999999999999999999999999999998316899999876632        12235777777765444444444


Q ss_pred             HHH
Q 041557          133 VDV  135 (189)
Q Consensus       133 l~~  135 (189)
                      +++
T Consensus       122 ~~~  124 (376)
T 2e1m_A          122 IDK  124 (376)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.09  E-value=2.2e-10  Score=102.81  Aligned_cols=120  Identities=11%  Similarity=0.046  Sum_probs=70.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeC-CchhHHHHHHHhhhh
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVN-DSRFGELVDVCWKVV  140 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~l~~~~~~~  140 (189)
                      ...+|+|||||++|+++|..|++.|++|+|||+. +.+||.|........  ..+.....+... .+.   ....+.-..
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~-~~~GG~w~~~~~pg~--~~d~~~~~~~~~f~~~---~~~~~~~~~   88 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETA-GDVGGVWYWNRYPGA--RCDIESIEYCYSFSEE---VLQEWNWTE   88 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCTHHHHCCCTTC--BCSSCTTTSSCCSCHH---HHHHCCCCB
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCC-CCCCCcccccCCCce--eecccccccccccChh---hhhccCccc
Confidence            3578999999999999999999999999999997 899998754333221  122211111111 110   000000000


Q ss_pred             hhcCchHHHHHHh----ccCCCcEEEeCceeEEEEEeC--CeEEEEeCCeeee
Q 041557          141 LLLGYSKSQNLNI----FQTSKVNVVRTCWISNLEPFN--GMWYLGENGKTAW  187 (189)
Q Consensus       141 ~~~~~~~~~~~l~----~~~~~v~v~~~t~V~~i~~~~--~~w~l~~~~~~~~  187 (189)
                      ......++.+++.    ....++.++++++|++++.++  +.|+|++.+++.+
T Consensus        89 ~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~  141 (542)
T 1w4x_A           89 RYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRI  141 (542)
T ss_dssp             SSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEE
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEE
Confidence            0000011111111    111246899999999999875  3799998776544

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.08  E-value=1.2e-10  Score=102.41  Aligned_cols=64  Identities=20%  Similarity=0.277  Sum_probs=53.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhH
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFG  130 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  130 (189)
                      ++|+|||||++||++|+.|+++|++|+|||+. +.+||++.+...++  ..+|.|++++....+.+.
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~-~~~GGr~~t~~~~g--~~~d~G~~~~~~~~~~~~  103 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEAR-DRIGGRSWSSNIDG--YPYEMGGTWVHWHQSHVW  103 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSS-SBSBTTCCEEEETT--EEEECSCCCBCTTSHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCC-CCCCCcceecccCC--eeecCCCeEecCccHHHH
Confidence            68999999999999999999999999999997 99999998877654  357888877754333333

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.08  E-value=2.6e-10  Score=102.92  Aligned_cols=121  Identities=12%  Similarity=0.058  Sum_probs=72.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhh
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVL  141 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~  141 (189)
                      ...+|+|||||++|+++|..|++.|++|+|||+. +.+||.|...+..+.  ..|.....+.....  ......+.-...
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~-~~~GGtw~~~~ypg~--~~dv~s~~y~~~f~--~~~~~~~~~~~~   94 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAA-SGVGGVWYWNRYPGA--RCDVESIDYSYSFS--PELEQEWNWSEK   94 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCTHHHHCCCTTC--BCSSCTTTSSCCSC--HHHHHHCCCSSS
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCC-CCCCCccccCCCCCc--eeCCCchhcccccc--cccccCCCCccC
Confidence            3578999999999999999999999999999997 999998864443221  12222222221100  000000000000


Q ss_pred             hcCchHHHHHHhc--cCCCc--EEEeCceeEEEEEeCC--eEEEEeCCeeee
Q 041557          142 LLGYSKSQNLNIF--QTSKV--NVVRTCWISNLEPFNG--MWYLGENGKTAW  187 (189)
Q Consensus       142 ~~~~~~~~~~l~~--~~~~v--~v~~~t~V~~i~~~~~--~w~l~~~~~~~~  187 (189)
                      .....++.+++..  ...++  .++++++|++++.+++  .|+|++.+++.+
T Consensus        95 ~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i  146 (549)
T 4ap3_A           95 YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEV  146 (549)
T ss_dssp             SCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEE
T ss_pred             CCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEE
Confidence            0000111111111  01133  8999999999998765  899999887654

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.07  E-value=2e-10  Score=101.20  Aligned_cols=60  Identities=28%  Similarity=0.458  Sum_probs=49.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEee
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTV  124 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~  124 (189)
                      ..++|+|||||++||++|+.|+++|++|+|||+. +.+||++.+...++  +.+|.|++++..
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~-~~~GG~~~~~~~~g--~~~~~g~~~~~~   71 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAE-GKAGGKLRSVSQDG--LIWDEGANTMTE   71 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSS-SSSCSSCCEEEETT--EEEESSCCCBCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeC-CCCCCceeeeccCC--eEEecCCccccc
Confidence            3578999999999999999999999999999998 99999998876644  246666655543

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.07  E-value=1.4e-10  Score=100.49  Aligned_cols=71  Identities=25%  Similarity=0.384  Sum_probs=57.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC------CeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHH
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG------VKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVC  136 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g------~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~  136 (189)
                      .++|+|||||++||++|+.|+++|      ++|+|||+. +.+||++.+...++.  .++.|.+.+....+.+.++++++
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~-~~~GG~~~s~~~~g~--~~d~G~~~~~~~~~~~~~l~~~l   81 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEAS-PRVGGKIQTVKKDGY--IIERGPDSFLERKKSAPQLVKDL   81 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSS-SSSCTTCCEECCTTC--CEESSCCCEETTCTHHHHHHHHT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECC-CCCCceEEEeccCCE--EeccChhhhhhCCHHHHHHHHHc
Confidence            468999999999999999999999      999999997 999999988766543  47888877765555555555443

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.07  E-value=2.9e-10  Score=102.45  Aligned_cols=120  Identities=9%  Similarity=0.101  Sum_probs=71.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHH-HcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLD-KRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVL  141 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~-~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~  141 (189)
                      ..+|+|||||++|+++|..|+ +.|++|+|||+. +.+||.|......+.  ..+.....+.....  ......+.-...
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~-~~~GGtw~~~~ypg~--~~d~~s~~~~~~~~--~~~~~~~~~~~~   82 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKA-DGPGGTWYWNRYPGA--LSDTESHLYRFSFD--RDLLQESTWKTT   82 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESS-SSSCTHHHHCCCTTC--EEEEEGGGSSCCSC--HHHHHHCCCSBS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECC-CCCCCcccccCCCCc--eecCCcceeeeccc--cccccCCCCccc
Confidence            468999999999999999999 999999999997 899998765433321  12222222211100  000000000000


Q ss_pred             hcCchHHHHHHhc--cCCCc--EEEeCceeEEEEEeCC--eEEEEeCCeeee
Q 041557          142 LLGYSKSQNLNIF--QTSKV--NVVRTCWISNLEPFNG--MWYLGENGKTAW  187 (189)
Q Consensus       142 ~~~~~~~~~~l~~--~~~~v--~v~~~t~V~~i~~~~~--~w~l~~~~~~~~  187 (189)
                      .....++.+++..  ...++  .++++++|++++.+++  .|+|++.+++.+
T Consensus        83 ~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i  134 (540)
T 3gwf_A           83 YITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVY  134 (540)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             CCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEE
Confidence            0000111111111  01244  8999999999998766  899998887644

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.05  E-value=2.2e-10  Score=101.90  Aligned_cols=59  Identities=25%  Similarity=0.320  Sum_probs=51.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCCCcCceeeee-CCcceeeecceeeEee
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMGNPDLEGRMGTRMI-GRQPLIFDHATQFFTV  124 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~~~~~gg~~~~~~~-~~~~~~~~~g~~~~~~  124 (189)
                      .++|+|||||++||+||+.|+++| ++|+|||+. +.+||++.+... ++  ..+|.|++++..
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~-~riGGr~~t~~~~~G--~~~D~G~~~~~~   68 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEAR-DRVGGRLQTVTGYQG--RKYDIGASWHHD   68 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSS-SSSBTTCCEEECGGG--CEEESSCCEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCC-CCCCCceeeeecCCC--cEEecCCeEEec
Confidence            468999999999999999999999 999999997 999999988665 33  358999988874

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.05  E-value=3.9e-10  Score=97.59  Aligned_cols=73  Identities=15%  Similarity=0.241  Sum_probs=58.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCCCcCceeeeeCCcceee-ecceeeEeeCCchhHHHHHH
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMGNPDLEGRMGTRMIGRQPLIF-DHATQFFTVNDSRFGELVDV  135 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~l~~  135 (189)
                      ...+|+|||||++||++|+.|+++ |++|+|||+. +.+||++.+.........+ +.|.+++....+.+.+++++
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~-~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~   80 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERR-PHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVRQ   80 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSS-SSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCC-CCCCCeeeeccccCCCEEEEeCCCcEEcCCcHHHHHHHHH
Confidence            367999999999999999999999 9999999998 9999999887763112345 47888888766666555544

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.04  E-value=4.9e-10  Score=94.49  Aligned_cols=104  Identities=16%  Similarity=0.204  Sum_probs=67.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhh
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVL  141 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~  141 (189)
                      ..+||+|||||++||++|+.|+++|++|+|||+. +.+||.+.... .. ...++...    ........+.+.+     
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~~gg~~~~~~-~~-~~~~~~~~----~~~~~~~~~~~~l-----   80 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESM-PQLGGQLAALY-PE-KHIYDVAG----FPEVPAIDLVESL-----   80 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCHHHHHTC-TT-SEECCSTT----CSSEEHHHHHHHH-----
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecC-CCCCCcccccC-CC-cccccCCC----CCCCCHHHHHHHH-----
Confidence            3578999999999999999999999999999997 88998874321 10 00111100    0000111111111     


Q ss_pred             hcCchHHHHHHhccCCCcEEEeCceeEEEEEeCC-eEEEEeCCeee
Q 041557          142 LLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNG-MWYLGENGKTA  186 (189)
Q Consensus       142 ~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~-~w~l~~~~~~~  186 (189)
                             .+.+..  .+++++++++|+.++..++ .|.|.+.++..
T Consensus        81 -------~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~  117 (360)
T 3ab1_A           81 -------WAQAER--YNPDVVLNETVTKYTKLDDGTFETRTNTGNV  117 (360)
T ss_dssp             -------HHHHHT--TCCEEECSCCEEEEEECTTSCEEEEETTSCE
T ss_pred             -------HHHHHH--hCCEEEcCCEEEEEEECCCceEEEEECCCcE
Confidence                   112221  3689999999999998765 79998876643

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.04  E-value=1.1e-09  Score=95.01  Aligned_cols=39  Identities=38%  Similarity=0.543  Sum_probs=35.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      .+||+|||||++|+++|+.|+++|.+|+|||+. +.+|+.
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~-~~~g~~   42 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNG-KKIGRK   42 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCC-CCCchh
Confidence            478999999999999999999999999999997 777554

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.02  E-value=1.2e-09  Score=93.87  Aligned_cols=38  Identities=21%  Similarity=0.519  Sum_probs=33.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      ...+|+|||||++||++|+.|+++|++|+|||+. +.+.
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~-~~~~   59 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAV-KEIK   59 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-SCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCC-CCCC
Confidence            5689999999999999999999999999999997 6543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.02  E-value=9.2e-10  Score=90.39  Aligned_cols=97  Identities=16%  Similarity=0.117  Sum_probs=62.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee-CCcceeeecceeeEeeCCchhHHHHHHHhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI-GRQPLIFDHATQFFTVNDSRFGELVDVCWKVVL  141 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~  141 (189)
                      .++|+|||||++||++|+.|+++|++|+|||+.   +||.+..... ...+ .+         ......++.+.+     
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~---~gg~~~~~~~~~~~~-~~---------~~~~~~~~~~~~-----   76 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET---PGGQLTEAGIVDDYL-GL---------IEIQASDMIKVF-----   76 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS---TTGGGGGCCEECCST-TS---------TTEEHHHHHHHH-----
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc---CCCeecccccccccC-CC---------CCCCHHHHHHHH-----
Confidence            478999999999999999999999999999983   8888754211 1000 00         000111111110     


Q ss_pred             hcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          142 LLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       142 ~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                             .+.+..  .++++++ ++|+++..+++.|.|.+.++..+
T Consensus        77 -------~~~~~~--~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~  112 (323)
T 3f8d_A           77 -------NKHIEK--YEVPVLL-DIVEKIENRGDEFVVKTKRKGEF  112 (323)
T ss_dssp             -------HHHHHT--TTCCEEE-SCEEEEEEC--CEEEEESSSCEE
T ss_pred             -------HHHHHH--cCCEEEE-EEEEEEEecCCEEEEEECCCCEE
Confidence                   111111  3788998 99999998888899988775443

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.02  E-value=5.9e-10  Score=92.29  Aligned_cols=96  Identities=18%  Similarity=0.194  Sum_probs=63.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCC---CCCCcCceeee-eCCcceeeecceeeEeeCCchhHHHHHHHh
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGN---PDLEGRMGTRM-IGRQPLIFDHATQFFTVNDSRFGELVDVCW  137 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~---~~~gg~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~  137 (189)
                      ..++|+|||||++||++|+.|+++|++|+|||+..   ..+||.+.... ...++ .+.   .+.  ....+...+..  
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~-~~~---~~~--~~~~~~~~~~~--   92 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFP-GFP---DGL--TGSELMDRMRE--   92 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCST-TCT---TCE--EHHHHHHHHHH--
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccC-CCc---ccC--CHHHHHHHHHH--
Confidence            46899999999999999999999999999999940   46888875422 11100 000   000  01112111111  


Q ss_pred             hhhhhcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          138 KVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       138 ~~~~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                                   .+..  .++++++++ |++++..++.|.+.+
T Consensus        93 -------------~~~~--~gv~i~~~~-v~~i~~~~~~~~v~~  120 (338)
T 3itj_A           93 -------------QSTK--FGTEIITET-VSKVDLSSKPFKLWT  120 (338)
T ss_dssp             -------------HHHH--TTCEEECSC-EEEEECSSSSEEEEE
T ss_pred             -------------HHHH--cCCEEEEeE-EEEEEEcCCEEEEEE
Confidence                         1111  278999998 999998888898876

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.02  E-value=3.9e-10  Score=101.69  Aligned_cols=120  Identities=9%  Similarity=0.041  Sum_probs=69.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHH-HHHHHhhhh
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGE-LVDVCWKVV  140 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~l~~~~~~~  140 (189)
                      ...+|+|||||++|+++|+.|++.|++|+|||++ +.+||.|....+.+.  ..|.....+...   |.. ....+.-..
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~-~~~GGtw~~~~yPg~--~~d~~~~~y~~~---f~~~~~~~~~~~~   81 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAG-EDVGGTWYWNRYPGC--RLDTESYAYGYF---ALKGIIPEWEWSE   81 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCTHHHHCCCTTC--BCSSCHHHHCHH---HHTTSSTTCCCSB
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCC-CCCCCccccCCCCce--eecCchhhcccc---cCcccccCCCccc
Confidence            4578999999999999999999999999999998 899998864443321  122221111100   000 000000000


Q ss_pred             hhcCchHHHHHHh----ccCCCcEEEeCceeEEEEEeC--CeEEEEeCCeeee
Q 041557          141 LLLGYSKSQNLNI----FQTSKVNVVRTCWISNLEPFN--GMWYLGENGKTAW  187 (189)
Q Consensus       141 ~~~~~~~~~~~l~----~~~~~v~v~~~t~V~~i~~~~--~~w~l~~~~~~~~  187 (189)
                      ......++.+++.    .......++++++|++++.++  +.|+|++.+++.+
T Consensus        82 ~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~  134 (545)
T 3uox_A           82 NFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVV  134 (545)
T ss_dssp             SSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEE
T ss_pred             cCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEE
Confidence            0000011111111    111123789999999999765  4899999887654

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.01  E-value=6.9e-10  Score=95.72  Aligned_cols=56  Identities=14%  Similarity=0.230  Sum_probs=47.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeE
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFF  122 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~  122 (189)
                      .||+|||||++||++|+.|+++|++|+|||++ +.+||++.+...++  +.+|.|+.++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~-~~~GG~~~~~~~~g--~~~d~G~~~~   56 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKS-AMIGGRFTNLPYKG--FQLSTGALHM   56 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSS-SSSCTTSSEEEETT--EEEESSSCSE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-CCCCceeEEeccCC--EEEecCCeEE
Confidence            37999999999999999999999999999998 99999998876654  3467765444

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.00  E-value=2.6e-09  Score=100.10  Aligned_cols=45  Identities=36%  Similarity=0.445  Sum_probs=41.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeee
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRM  107 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~  107 (189)
                      ..++|+|||||++||++|+.|++.|++|+|+|+. +.+||++.+..
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~-~~~ggri~T~~  379 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAK-DRIGGRVWDDK  379 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSS-SSSCTTCCEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecc-cceeceeeecc
Confidence            4579999999999999999999999999999997 89999877643

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.00  E-value=4.8e-10  Score=97.34  Aligned_cols=58  Identities=28%  Similarity=0.397  Sum_probs=48.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEe
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFT  123 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~  123 (189)
                      .++|+|||||++||++|+.|+++|++|+|||+. +.+||++.+....+  ..+|.|.+++.
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~-~~~GG~~~~~~~~g--~~~~~g~~~~~   62 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEAR-DRVGGRTWTDTIDG--AVLEIGGQWVS   62 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCTTCCEEEETT--EEEECSCCCBC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECC-CCCCCceeccccCC--ceeccCCeEec
Confidence            468999999999999999999999999999997 99999998766533  24566665554

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.00  E-value=2.5e-09  Score=89.37  Aligned_cols=39  Identities=23%  Similarity=0.251  Sum_probs=34.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ..||+|||||++|+++|+.|+++|++|+|+|+. +.+|+.
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~-~~~~~~   42 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGHEVLVAEAA-EGIGTG   42 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCCc
Confidence            468999999999999999999999999999997 656543

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.00  E-value=7.4e-10  Score=96.82  Aligned_cols=71  Identities=17%  Similarity=0.340  Sum_probs=57.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHH
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVC  136 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~  136 (189)
                      .++|+|||||++||++|+.|+++|  ++|+|||+. +.+||++.+....+.  .++.|.+.+....+.+.++++++
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~-~~~GG~~~~~~~~g~--~~~~g~~~~~~~~~~~~~l~~~l   76 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAG-ERLGGKVATYREDGF--TIERGPDSYVARKHILTDLIEAI   76 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSS-SSSBTTCCEECSTTC--CEESSCCCEETTSTHHHHHHHHT
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECC-CCCCceeEEEeeCCE--EEecCchhhhcccHHHHHHHHHc
Confidence            468999999999999999999999  999999997 999999888766543  47888877765555555555443

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.99  E-value=7.4e-10  Score=93.18  Aligned_cols=40  Identities=25%  Similarity=0.438  Sum_probs=36.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCCcCce
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~~~~~gg~~~  104 (189)
                      .++|+|||||++|+++|+.|++.|+ +|+|||+. + +||.+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~-~-~Gg~~~   44 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKG-T-VGHSFK   44 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSS-S-TTHHHH
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecC-C-CCCccc
Confidence            4689999999999999999999999 99999997 6 888654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.99  E-value=1.2e-09  Score=95.37  Aligned_cols=43  Identities=21%  Similarity=0.220  Sum_probs=39.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecCCCCCCcCcee
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMGNPDLEGRMGT  105 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~~~~~gg~~~~  105 (189)
                      ..++|+|||||++||++|..|++.|+  +|+|||+. +.+||.|..
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~-~~~GG~~~~   49 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR-GSPGGVWNY   49 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS-SSSSTTCSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecC-CCCCCeecC
Confidence            45789999999999999999999999  99999997 889998754

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.98  E-value=1.1e-09  Score=94.55  Aligned_cols=72  Identities=13%  Similarity=0.239  Sum_probs=58.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCccee-eecceeeEeeCCchhHHHHHH
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLI-FDHATQFFTVNDSRFGELVDV  135 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~l~~  135 (189)
                      ..+|+|||||++||++|+.|+++|++|+|||+. +.+||++.+.......+. .+.|.+++....+.+.+++++
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~-~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~   75 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQR-DHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNK   75 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS-SSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEec-CCcCCccccccccCCCceEeeCCceEECCCCHHHHHHHHH
Confidence            368999999999999999999999999999997 999999988766311233 478888888776666665554

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.98  E-value=5.1e-09  Score=96.52  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=35.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||||++|+++|+.|+++|++|+|||+. ..+|+.
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~-~~~g~g  302 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRRGAVVTLYCAD-AQPAQG  302 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTTTCCEEEEESS-SSTTCS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCC-Cccccc
Confidence            4589999999999999999999999999999996 666543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.98  E-value=5.3e-09  Score=96.10  Aligned_cols=39  Identities=28%  Similarity=0.365  Sum_probs=35.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ..+||+|||||++|+++|+.|+++|++|+|||+. ..+|+
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~-~~~g~  309 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRRGWQVTLYCAD-EAPAL  309 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS-SSSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-Ccccc
Confidence            4589999999999999999999999999999996 66653

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.97  E-value=7.5e-10  Score=95.42  Aligned_cols=60  Identities=23%  Similarity=0.322  Sum_probs=47.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCC-cceeeecceeeEee
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGR-QPLIFDHATQFFTV  124 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~-~~~~~~~g~~~~~~  124 (189)
                      +||+|||||++||++|+.|+++|++|+|+|+. +.+||++.+..... ....++.|..++..
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~-~~~GG~~~t~~~~cipg~~~~~g~~~~~~   62 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGG-ERLGGRAYSRESRNVPGLRVEIGGAYLHR   62 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSS-SSSBTTCCEEECSSSTTCEEESSCCCBCT
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecC-CCccCeecceeccCCCCceEecCCeeeCC
Confidence            48999999999999999999999999999997 89999987765441 01235555555443

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.96  E-value=1.7e-10  Score=110.98  Aligned_cols=98  Identities=16%  Similarity=0.227  Sum_probs=72.9

Q ss_pred             cceeecccccCCCCCCCCCCC--CCCcCccccCC-CCcchhhHhhhhhhhcc----cccc-CC---------CCCCCCEE
Q 041557            5 TSTIIKATSSQPKTNSTNAQK--PTCRNCRRGSS-YGSPRRSALKKTFTQKQ----FTFT-AP---------ISSNPHVK   67 (189)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~--p~~~~c~r~~~-~~~~~~~~~~~~~~~~~----~~~~-~~---------~~~~~~v~   67 (189)
                      |.++|..+.+.|...+..|++  ||+..|+++.. .+++.+..++++.....    +... .|         ....++|+
T Consensus       112 A~~~~~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~Vv  191 (1025)
T 1gte_A          112 AAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIA  191 (1025)
T ss_dssp             HHHHHHHHCTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTTSCCGGGSCGGGGCCEE
T ss_pred             HHHHHHhcCChhHhhcCCCCChhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHhCCccccCccccccccCCccCCCEEE
Confidence            445555566666666777887  99999999764 57777777777766532    2211 11         12367999


Q ss_pred             EECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCCcCc
Q 041557           68 IIGGGMAVLACALRLDKRGV-KSNVFDMGNPDLEGRM  103 (189)
Q Consensus        68 IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~~~~~gg~~  103 (189)
                      |||||++||++|..|+++|+ +|+|||+. +.+||.+
T Consensus       192 VIGgGpAGl~aA~~L~~~G~~~Vtv~E~~-~~~GG~~  227 (1025)
T 1gte_A          192 LLGAGPASISCASFLARLGYSDITIFEKQ-EYVGGLS  227 (1025)
T ss_dssp             EECCSHHHHHHHHHHHHTTCCCEEEEESS-SSCSTHH
T ss_pred             EECccHHHHHHHHHHHhcCCCcEEEEeCC-CCCCccc
Confidence            99999999999999999999 79999997 8888753

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.96  E-value=8.2e-10  Score=94.87  Aligned_cols=56  Identities=25%  Similarity=0.307  Sum_probs=47.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeE
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFF  122 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~  122 (189)
                      +||+|||||++||++|+.|+++|++|+|||+. +.+||+..+...++.  .++.|+..+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~-~~~GG~~~~~~~~G~--~~d~G~~~~   56 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERL-PITGGRFTNLSYKGF--QLSSGAFHM   56 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSS-SSSBTTSSEEEETTE--EEESSSCSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCC-CCCCCceeeeccCCc--EEcCCCceE
Confidence            37999999999999999999999999999998 999999988665543  466665433

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.96  E-value=1.9e-09  Score=94.74  Aligned_cols=47  Identities=32%  Similarity=0.405  Sum_probs=42.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI  108 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~  108 (189)
                      ....+|+|||||++||++|+.|+++|++|+|||+. +.+||++.+...
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~-~~~GG~~~~~~~   55 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEAR-TRPGGRVWTARG   55 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSCTTCCEEET
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecc-CCCCCceeeecc
Confidence            34678999999999999999999999999999998 999999876543

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.96  E-value=1e-09  Score=95.83  Aligned_cols=59  Identities=20%  Similarity=0.281  Sum_probs=49.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC--eEEEEecCCCCCCcCceeeeeCCcceeeecceeeEee
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV--KSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTV  124 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~  124 (189)
                      ++|+|||||++||++|+.|+++|+  +|+|||+. +.+||++.+..... ...++.|.+.+..
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~-~~~GG~~~t~~~~~-g~~~d~G~~~~~~   63 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESS-ERLGGWIRSVRGPN-GAIFELGPRGIRP   63 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSS-SSSBTTCCEEECTT-SCEEESSCCCBCC
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCC-CCCCCceEEEeccC-CeEEEeCCCcccC
Confidence            589999999999999999999999  99999997 99999998865532 2357888776643

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.96  E-value=7.4e-09  Score=87.12  Aligned_cols=39  Identities=15%  Similarity=0.141  Sum_probs=34.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ..++|+|||||++||++|+.|+ +|++|+|+|+. +.+|+.
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~-~~~g~~   46 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-AHGRVVVLERE-AQPGYH   46 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-TTSCEEEECSS-SSTTSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECC-CCcccc
Confidence            3579999999999999999999 69999999997 667643

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.95  E-value=2.5e-09  Score=91.72  Aligned_cols=39  Identities=36%  Similarity=0.526  Sum_probs=34.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      +..++|+|||||++||++|+.|++.|++|+|||+. +.++
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~-~~~~   62 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERD-NDRE   62 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS-SSTT
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCcc
Confidence            34679999999999999999999999999999996 5543

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.95  E-value=1.9e-09  Score=94.92  Aligned_cols=61  Identities=25%  Similarity=0.274  Sum_probs=48.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEe
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFT  123 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~  123 (189)
                      ..++|+|||||++||++|+.|+++|++|+|+|+. +.+||++.+.......+.++.|++++.
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~-~~~gg~~~~~~~~~~~~~~~~g~~~~~   92 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEAS-ERPGGRVRTYRNEEAGWYANLGPMRLP   92 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSS-SSSBTTCCEEEETTTTEEEESSCCCEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCCceeeeccCCCCchhhcCccccc
Confidence            4578999999999999999999999999999997 999999877653222234555655443

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.94  E-value=1.3e-09  Score=94.97  Aligned_cols=72  Identities=22%  Similarity=0.237  Sum_probs=54.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHH
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVD  134 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~  134 (189)
                      ...+|+|||||++||++|+.|+++|++|+|+|+. +.+||++.+.........++.|++.+....+.+.++++
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~-~~~GG~~~~~~~~~G~~~~~~G~~~~~~~~~~~~~~~~   99 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRR-PHIGGNAYDCYDDAGVLIHPYGPHIFHTNSKDVFEYLS   99 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSSGGGCCEECTTSCEECTTSCCCCEESCHHHHHHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEecc-CCCCCccceeeccCCceEeecCCcccCCChHHHHHHHH
Confidence            4679999999999999999999999999999997 99999998765222122246777776655554444443

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.94  E-value=3.2e-09  Score=87.82  Aligned_cols=42  Identities=24%  Similarity=0.296  Sum_probs=36.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      +..+||+||||||+||+||++|+++|++|+|||++  .+||.+.
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~--~~gg~~~   45 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN--TNRNRVT   45 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS--CCGGGGS
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC--CCCCeee
Confidence            45789999999999999999999999999999985  6777653

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.92  E-value=6.4e-09  Score=85.52  Aligned_cols=97  Identities=15%  Similarity=0.159  Sum_probs=62.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCCcCceeeee-CCcceeeecceeeEeeCCchhHHHHHHHhhhhh
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV-KSNVFDMGNPDLEGRMGTRMI-GRQPLIFDHATQFFTVNDSRFGELVDVCWKVVL  141 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~~~~~gg~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~  141 (189)
                      ++|+|||||++|+++|+.|+++|+ +|+|||+.  .+||.+..... ..++     +..    .......+.+.+     
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~--~~gg~~~~~~~~~~~~-----~~~----~~~~~~~~~~~l-----   65 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG--MPGGQITGSSEIENYP-----GVK----EVVSGLDFMQPW-----   65 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS--STTCGGGGCSCBCCST-----TCC----SCBCHHHHHHHH-----
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC--CCCcccccccccccCC-----CCc----ccCCHHHHHHHH-----
Confidence            479999999999999999999999 99999984  67887643211 0000     000    000111111111     


Q ss_pred             hcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557          142 LLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA  186 (189)
Q Consensus       142 ~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~  186 (189)
                             .+.+..  .++++++ ++|++++.+++.|+|.+.++..
T Consensus        66 -------~~~~~~--~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~  100 (311)
T 2q0l_A           66 -------QEQCFR--FGLKHEM-TAVQRVSKKDSHFVILAEDGKT  100 (311)
T ss_dssp             -------HHHHHT--TSCEEEC-SCEEEEEEETTEEEEEETTSCE
T ss_pred             -------HHHHHH--cCCEEEE-EEEEEEEEcCCEEEEEEcCCCE
Confidence                   111111  3789988 8999999988889987665543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.91  E-value=7e-09  Score=88.93  Aligned_cols=37  Identities=27%  Similarity=0.594  Sum_probs=33.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ...+|+|||||++||++|+.|+++|++|+|||+. +.+
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~-~~~   40 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERS-PQP   40 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecC-CCC
Confidence            3578999999999999999999999999999996 543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.91  E-value=7.8e-09  Score=87.58  Aligned_cols=34  Identities=32%  Similarity=0.543  Sum_probs=31.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      +|+||||||+||++|+.|+++|++|+|||+. +.+
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~-~~~   36 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERN-SAA   36 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSS-CSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecC-CCC
Confidence            6999999999999999999999999999996 554

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.90  E-value=1.9e-08  Score=81.65  Aligned_cols=97  Identities=20%  Similarity=0.225  Sum_probs=59.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhc
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLL  143 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~  143 (189)
                      ++|+|||||++||++|..|+++|++|+|||+. . ..+.+..... .    +      .........+++..+       
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~-~~~~~~~~~~-~----~------~~~~~~~~~~~~~~~-------   62 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAG-E-RRNRFASHSH-G----F------LGQDGKAPGEIIAEA-------   62 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECC-C-CGGGGCSCCC-S----S------TTCTTCCHHHHHHHH-------
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCC-C-cccccchhhc-C----C------cCCCCCCHHHHHHHH-------
Confidence            68999999999999999999999999999986 4 3333221100 0    0      000011111111111       


Q ss_pred             CchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          144 GYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       144 ~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                           .+.+... .+++++. .+|++++.+++.|.|.+.++..+
T Consensus        63 -----~~~~~~~-~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~   99 (297)
T 3fbs_A           63 -----RRQIERY-PTIHWVE-GRVTDAKGSFGEFIVEIDGGRRE   99 (297)
T ss_dssp             -----HHHHTTC-TTEEEEE-SCEEEEEEETTEEEEEETTSCEE
T ss_pred             -----HHHHHhc-CCeEEEE-eEEEEEEEcCCeEEEEECCCCEE
Confidence                 1111111 2567654 59999999999999988776543

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.90  E-value=2.2e-09  Score=91.89  Aligned_cols=68  Identities=22%  Similarity=0.262  Sum_probs=54.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeee-cceeeEeeCCchhHHHHH
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFD-HATQFFTVNDSRFGELVD  134 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~l~  134 (189)
                      .+|+|||||++||++|+.|+++|++|+|+|+. +.+||++.+....+  ..++ .|++++....+.+.++++
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~-~~~GG~~~~~~~~g--~~~~~~G~~~~~~~~~~~~~~~~   70 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKR-NHIGGNAYTEDCEG--IQIHKYGAHIFHTNDKYIWDYVN   70 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSS-SSSSGGGCEEEETT--EEEETTSCCCEEESCHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecC-CCCCcceEeeccCC--ceeeccCCceecCCCHHHHHHHH
Confidence            47999999999999999999999999999997 89999998866543  3454 788888766555544443

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.90  E-value=4.7e-09  Score=94.90  Aligned_cols=40  Identities=23%  Similarity=0.308  Sum_probs=35.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ..+||+|||||++||++|+.|++.|++|+|||++ +.++++
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~-~~~~~R  145 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERG-KEVRER  145 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSS-CCHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEcc-Cccccc
Confidence            3579999999999999999999999999999997 776544

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.89  E-value=1.2e-08  Score=89.37  Aligned_cols=40  Identities=28%  Similarity=0.422  Sum_probs=36.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||||++||++|+.|+++|++|+|+|+. +.+|+.
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~-~~~g~~   64 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKG-NKLGRK   64 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECC-CCCCce
Confidence            4579999999999999999999999999999997 777653

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.88  E-value=1.9e-09  Score=90.35  Aligned_cols=43  Identities=21%  Similarity=0.229  Sum_probs=38.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCCCcCce
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDK--RGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~--~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ...+||+||||||+||+||++|++  .|++|+|||+. +.+||.+.
T Consensus        63 ~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~-~~~GG~~~  107 (326)
T 3fpz_A           63 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS-VAPGGGSW  107 (326)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS-SSCCTTTT
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECC-CCCCceEE
Confidence            346899999999999999999975  59999999997 89999875

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.88  E-value=6.6e-09  Score=86.21  Aligned_cols=42  Identities=26%  Similarity=0.389  Sum_probs=37.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCcee
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT  105 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~  105 (189)
                      ..++|+|||||++|+++|..|+++|++|+|||+.  .+||.+..
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~~gg~~~~   48 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG--MPGGQIAW   48 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--CTTGGGGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC--CCCccccc
Confidence            3578999999999999999999999999999995  68888653

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.87  E-value=5e-09  Score=86.97  Aligned_cols=94  Identities=14%  Similarity=0.120  Sum_probs=60.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEec----CCCCCCcCceeeee-CCcceeeecceeeEeeCCchhHHHHHHHh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDM----GNPDLEGRMGTRMI-GRQPLIFDHATQFFTVNDSRFGELVDVCW  137 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~----~~~~~gg~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~l~~~~  137 (189)
                      .++|+|||||++|+++|+.|++.|++|+|||+    . ..+||.+..... ...+ .+..   .+  ....+...+.   
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~-~~~gg~~~~~~~~~~~~-~~~~---~~--~~~~~~~~l~---   77 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAND-IAPGGQLTTTTDVENFP-GFPE---GI--LGVELTDKFR---   77 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTT-BCTTCGGGGCSEECCST-TCTT---CE--EHHHHHHHHH---
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccc-cCCCceeeeccccccCC-CCcc---CC--CHHHHHHHHH---
Confidence            46899999999999999999999999999998    4 567777543211 0000 0000   00  0011111111   


Q ss_pred             hhhhhcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          138 KVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       138 ~~~~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                                  +.+..  .++++++++ |++++..++.|+|.+
T Consensus        78 ------------~~~~~--~gv~~~~~~-v~~i~~~~~~~~v~~  106 (333)
T 1vdc_A           78 ------------KQSER--FGTTIFTET-VTKVDFSSKPFKLFT  106 (333)
T ss_dssp             ------------HHHHH--TTCEEECCC-CCEEECSSSSEEEEC
T ss_pred             ------------HHHHH--CCCEEEEeE-EEEEEEcCCEEEEEE
Confidence                        11111  378999987 999988888899887

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.87  E-value=1.2e-08  Score=86.84  Aligned_cols=39  Identities=23%  Similarity=0.476  Sum_probs=34.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ...+|+|||||++||++|+.|+++|++|+|||+. +.+++
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~-~~~~~   48 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKS-SELRA   48 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSCCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCC
Confidence            3578999999999999999999999999999997 66543

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.87  E-value=3.8e-08  Score=85.03  Aligned_cols=40  Identities=28%  Similarity=0.350  Sum_probs=35.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||||++||++|+.|+++|+ +|+|+|+. ...+|.
T Consensus         5 ~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~-~~~~~~   45 (438)
T 3dje_A            5 KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPY-PVPSAI   45 (438)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS-CSSCTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCC-CCCCCC
Confidence            45799999999999999999999999 99999997 666654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.86  E-value=1.3e-08  Score=86.94  Aligned_cols=36  Identities=22%  Similarity=0.218  Sum_probs=32.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ..+|+|||||++||++|+.|+++|++|+|||+. +.+
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~-~~~   41 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQA-RRE   41 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-CCC
Confidence            368999999999999999999999999999996 554

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.86  E-value=4.6e-09  Score=86.59  Aligned_cols=40  Identities=15%  Similarity=0.264  Sum_probs=36.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      .++|+|||||++|+++|+.|+++|++|+|||+  ..+||.+.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~--~~~gg~~~   44 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITG--MEKGGQLT   44 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECC--SSTTGGGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEcc--CCCCceEe
Confidence            46899999999999999999999999999997  47888764

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.85  E-value=6.4e-09  Score=92.18  Aligned_cols=59  Identities=20%  Similarity=0.294  Sum_probs=47.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCCCcCceee-eeCCcceeeecceeeEe
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMGNPDLEGRMGTR-MIGRQPLIFDHATQFFT  123 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~~~~~gg~~~~~-~~~~~~~~~~~g~~~~~  123 (189)
                      ..++|+|||||++||++|+.|+++| .+|+|||+. +.+||++.+. ..++  +.++.|.+.+.
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~-~~~GG~~~~~~~~~g--~~~~~g~~~~~   68 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECN-DTPGGLSRSFLDENG--FTWDLGGHVIF   68 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESS-SSSSGGGCEEECTTS--CEEESSCCCBC
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCC-CCCCCeeeeeecCCC--cEEeeCCcccc
Confidence            4578999999999999999999999 799999998 9999999874 3322  34566655543

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.84  E-value=1.4e-08  Score=77.64  Aligned_cols=94  Identities=17%  Similarity=0.183  Sum_probs=59.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhc
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLL  143 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~  143 (189)
                      ++|+|||||++|+.+|..|++.|.+|+|+|+. +..-.+.  .....++ .+..     ......+.+.+.         
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~-~~~~~~~--~~~~~~~-~~~~-----~~~~~~~~~~l~---------   63 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGG-RSKVKGV--SRVPNYP-GLLD-----EPSGEELLRRLE---------   63 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCTTTTC--SCCCCST-TCTT-----CCCHHHHHHHHH---------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CCcccCc--hhhhccC-CCcC-----CCCHHHHHHHHH---------
Confidence            47999999999999999999999999999997 5221111  0111000 0000     000111221111         


Q ss_pred             CchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557          144 GYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK  184 (189)
Q Consensus       144 ~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~  184 (189)
                            +.+..  .+++++++ +|++++.+++.|.|.+.++
T Consensus        64 ------~~~~~--~gv~v~~~-~v~~i~~~~~~~~v~~~~g   95 (180)
T 2ywl_A           64 ------AHARR--YGAEVRPG-VVKGVRDMGGVFEVETEEG   95 (180)
T ss_dssp             ------HHHHH--TTCEEEEC-CCCEEEECSSSEEEECSSC
T ss_pred             ------HHHHH--cCCEEEeC-EEEEEEEcCCEEEEEECCC
Confidence                  22222  37999999 9999998888899987765

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.84  E-value=4.9e-09  Score=92.43  Aligned_cols=41  Identities=20%  Similarity=0.357  Sum_probs=38.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHH---cCCe---EEEEecCCCCCCcCcee
Q 041557           64 PHVKIIGGGMAVLACALRLDK---RGVK---SNVFDMGNPDLEGRMGT  105 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~---~g~~---v~v~e~~~~~~gg~~~~  105 (189)
                      ++|+|||||++||++|..|++   .|++   |+|||+. +.+||.|..
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~-~~~GG~w~~   49 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQ-ADWGGQWNY   49 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSS-SSSCGGGSC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcC-CCCCCEeec
Confidence            689999999999999999999   9999   9999997 899998864

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.84  E-value=2.9e-08  Score=85.05  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=31.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~   37 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQ   37 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            468999999999999999999999999999996

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.83  E-value=1.1e-08  Score=84.11  Aligned_cols=96  Identities=19%  Similarity=0.245  Sum_probs=61.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeee-eCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRM-IGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      +||+|||||++||++|..|+++|++|+|+|+   .+||.+.... ...    + .+     ........+... .     
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~---~~gG~~~~~~~~~~----~-~~-----~~~~~~~~~~~~-~-----   62 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGE---RFGGQILDTVDIEN----Y-IS-----VPKTEGQKLAGA-L-----   62 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECS---STTGGGGGCCEECC----B-TT-----BSSEEHHHHHHH-H-----
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeC---CCCceecccccccc----c-cC-----cCCCCHHHHHHH-H-----
Confidence            5899999999999999999999999999975   4688764311 100    0 00     000111111111 1     


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeC---CeEEEEeCCeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFN---GMWYLGENGKTA  186 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~---~~w~l~~~~~~~  186 (189)
                            .+.+..  .+++++++++|+.+..+.   +.|.|.+.++..
T Consensus        63 ------~~~~~~--~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~  101 (310)
T 1fl2_A           63 ------KVHVDE--YDVDVIDSQSASKLIPAAVEGGLHQIETASGAV  101 (310)
T ss_dssp             ------HHHHHT--SCEEEECSCCEEEEECCSSTTCCEEEEETTSCE
T ss_pred             ------HHHHHH--cCCeEEccCEEEEEEecccCCceEEEEECCCCE
Confidence                  111211  378999999999997653   379998876543

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.83  E-value=9.5e-09  Score=85.83  Aligned_cols=42  Identities=24%  Similarity=0.286  Sum_probs=37.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      +..++|+|||||++|+++|+.|+++|++|+|||+.  .+||.+.
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~~gg~~~   53 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT--SFGGALM   53 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS--SCSCGGG
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC--CCCCcee
Confidence            34678999999999999999999999999999974  7888764

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.83  E-value=1.3e-08  Score=84.22  Aligned_cols=95  Identities=15%  Similarity=0.143  Sum_probs=61.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee-CCcceeeecceeeEeeCCchhHHHHHHHhhhh
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI-GRQPLIFDHATQFFTVNDSRFGELVDVCWKVV  140 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~  140 (189)
                      ..+||+|||||++|+++|+.|+++|++|+|||+.  .+||.+..... ..++     +  +   .......+.+.+    
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~~gg~~~~~~~~~~~~-----~--~---~~~~~~~~~~~~----   78 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA--VAGGLTAEAPLVENYL-----G--F---KSIVGSELAKLF----   78 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--STTGGGGGCSCBCCBT-----T--B---SSBCHHHHHHHH----
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC--CCCccccccchhhhcC-----C--C---cccCHHHHHHHH----
Confidence            3578999999999999999999999999999984  67887643211 0000     0  0   000111111111    


Q ss_pred             hhcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCC
Q 041557          141 LLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG  183 (189)
Q Consensus       141 ~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~  183 (189)
                              .+.+..  .++++++ .+|++++.+++.|+|.+++
T Consensus        79 --------~~~~~~--~~v~~~~-~~v~~i~~~~~~~~v~~~~  110 (319)
T 3cty_A           79 --------ADHAAN--YAKIREG-VEVRSIKKTQGGFDIETND  110 (319)
T ss_dssp             --------HHHHHT--TSEEEET-CCEEEEEEETTEEEEEESS
T ss_pred             --------HHHHHH--cCCEEEE-eeEEEEEEeCCEEEEEECC
Confidence                    111111  3788888 7999999888888887644

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.82  E-value=1e-08  Score=83.94  Aligned_cols=41  Identities=34%  Similarity=0.468  Sum_probs=36.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEE-EecCCCCCCcCcee
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNV-FDMGNPDLEGRMGT  105 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v-~e~~~~~~gg~~~~  105 (189)
                      .++|+|||||++||++|..|+++|++|+| +|+  ..+||.+..
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~--~~~gG~~~~   45 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK--GMPGGQITS   45 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS--SSTTGGGGG
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC--CCCCceeee
Confidence            46899999999999999999999999999 998  467888753

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.81  E-value=1.2e-08  Score=96.45  Aligned_cols=48  Identities=29%  Similarity=0.424  Sum_probs=43.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIG  109 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~  109 (189)
                      ...++|+|||+|++||++|+.|+++|++|+|||+. +.+||++.+.+..
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~-~~~GG~~~~~~~~  323 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR-DRVGGRVATFRKG  323 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSCTTCCEEEET
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEec-CcCCCceeeeccc
Confidence            35689999999999999999999999999999997 9999998776553

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.80  E-value=2.1e-08  Score=84.70  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=33.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+. ...
T Consensus        16 ~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~-~~~   52 (382)
T 1ryi_A           16 RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESG-TMG   52 (382)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-STT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-CCC
Confidence            4579999999999999999999999999999996 443

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.80  E-value=1.1e-08  Score=89.68  Aligned_cols=58  Identities=21%  Similarity=0.449  Sum_probs=49.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCCcCceeeeeCCcceeeecceeeEe
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFT  123 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~  123 (189)
                      .++|+|||+|++||++|+.|++.|+ +|+|||+. +.+||++.+....+  ..+|.|++++.
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~-~~~gg~~~~~~~~~--~~~d~g~~~~~   62 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEAT-DHIGGRMHKTNFAG--INVELGANWVE   62 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSS-SSSBTTSCEEEETT--EEEESSCCEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCC-CCCCCceeecccCC--cEEeeCCeEEe
Confidence            5689999999999999999999999 89999998 99999998876654  34777777765

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.80  E-value=1.1e-08  Score=92.54  Aligned_cols=38  Identities=26%  Similarity=0.260  Sum_probs=32.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      ..+||+|||||++||++|+.|+++|++|+|||+. +.+.
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~-~~~~   85 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKL-VEPV   85 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSC-SSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCC-CCCC
Confidence            4579999999999999999999999999999996 5543

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.80  E-value=5.6e-09  Score=91.63  Aligned_cols=44  Identities=18%  Similarity=0.194  Sum_probs=41.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceee
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTR  106 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~  106 (189)
                      ..+||+|||+|++||++|..|+++|++|+|+|++ +.+||++.+.
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~-~~~GG~~~t~   53 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQ-DHYGGEAASV   53 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCGGGCEE
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC-CCCCccccce
Confidence            4579999999999999999999999999999998 9999998874

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.79  E-value=2.4e-09  Score=90.08  Aligned_cols=38  Identities=24%  Similarity=0.378  Sum_probs=34.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      .+||+||||||+||++|+.|+++|++|+|||+. +.+|.
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~-~~~~~   41 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKR-PEIGS   41 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC-CCCCC
Confidence            479999999999999999999999999999996 66543

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.79  E-value=5.5e-08  Score=81.87  Aligned_cols=37  Identities=19%  Similarity=0.167  Sum_probs=33.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      ..||+|||||++|+++|+.|+++|++|+|+|+. ...+
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~-~~~~   38 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAH-MPPH   38 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSS-CSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCC
Confidence            468999999999999999999999999999996 5543

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.79  E-value=4.7e-08  Score=87.01  Aligned_cols=39  Identities=26%  Similarity=0.260  Sum_probs=34.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      ....+|+|||||++||++|+.|+++|++|+|||+. +.++
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~-~~~~   47 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERL-VERT   47 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC-CC-C
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCC-CCCC
Confidence            45678999999999999999999999999999996 6554

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.79  E-value=1.3e-08  Score=83.56  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+||+|||||++||+||..|+++|++|+|||+.
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~   36 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGF   36 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence            3479999999999999999999999999999985

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.79  E-value=1.1e-07  Score=80.40  Aligned_cols=34  Identities=29%  Similarity=0.523  Sum_probs=32.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...||+|||||++|+++|+.|+++|++|+|+|+.
T Consensus         4 ~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~   37 (382)
T 1y56_B            4 EKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKR   37 (382)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3578999999999999999999999999999996

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.77  E-value=2.4e-08  Score=85.90  Aligned_cols=37  Identities=24%  Similarity=0.560  Sum_probs=33.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMGNPDLE  100 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~~~~~g  100 (189)
                      ..+|+|||||++||++|+.|+++|++ |+|||+. +.++
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~-~~~~   41 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESS-SEIR   41 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESS-SSCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECC-CCcc
Confidence            57899999999999999999999999 9999996 6654

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.75  E-value=6.1e-08  Score=86.25  Aligned_cols=38  Identities=32%  Similarity=0.347  Sum_probs=34.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      ...+|+|||||++||++|+.|+++|++|+|||+. +.++
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~-~~~~   48 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQL-PQRT   48 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESC-SSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC-CCCC
Confidence            4678999999999999999999999999999996 5554

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.75  E-value=4.8e-08  Score=78.17  Aligned_cols=38  Identities=24%  Similarity=0.347  Sum_probs=33.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      .+||+|||||++|+.+|..|+++|.+|+|+|+. ....|
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~-~~~~G   40 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQS-LDAVM   40 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC-GGGTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecC-CCcCC
Confidence            578999999999999999999999999999996 44444

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.75  E-value=3.1e-08  Score=88.32  Aligned_cols=37  Identities=30%  Similarity=0.531  Sum_probs=33.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ...+|+|||||++||++|+.|+++|++|+|||+. +.+
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~-~~~   40 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERR-PGL   40 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS-SSC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCC-CCC
Confidence            3578999999999999999999999999999997 554

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.73  E-value=2.4e-08  Score=91.79  Aligned_cols=48  Identities=29%  Similarity=0.424  Sum_probs=43.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIG  109 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~  109 (189)
                      ...++|+|||+|++||++|+.|+++|++|+|||+. +.+||++.+.+..
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~-~~~gg~~~~~~~~  152 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR-DRVGGRVATFRKG  152 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS-SSSBTTCCEEEET
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecC-CCCCCcccccccc
Confidence            35689999999999999999999999999999997 9999998876553

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.72  E-value=3.6e-08  Score=81.28  Aligned_cols=39  Identities=23%  Similarity=0.405  Sum_probs=35.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCCCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~~~~~gg~  102 (189)
                      .+||+|||||++||++|+.|+++ |++|+|+|+. +.+||.
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~-~~~gg~   78 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS-VSPGGG   78 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESS-SSCCTT
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECC-CCCCCc
Confidence            56899999999999999999997 9999999997 777765

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.71  E-value=1.6e-07  Score=82.01  Aligned_cols=35  Identities=40%  Similarity=0.539  Sum_probs=32.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ..||+|||||++|+++|+.|+++|++|+|||+. +.
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~-~~   40 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSK-PW   40 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSS-CG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC-CC
Confidence            478999999999999999999999999999996 54

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.71  E-value=8.8e-08  Score=81.52  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=31.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|+|||||++||++|+.|++.|++|+|||+.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   34 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQ   34 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            368999999999999999999999999999986

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=98.70  E-value=1.6e-08  Score=93.95  Aligned_cols=73  Identities=16%  Similarity=0.354  Sum_probs=59.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC--------CeEEEEecCCC-CC----------------CcCceeeeeC-C----cc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG--------VKSNVFDMGNP-DL----------------EGRMGTRMIG-R----QP  112 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g--------~~v~v~e~~~~-~~----------------gg~~~~~~~~-~----~~  112 (189)
                      .++|+|||||++||++|+.|.++|        ++|+|||+. + .+                ||++.+.... .    ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~-~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~~~~~~~~  134 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEAD-PDSFLHDRPGIKAIKVRGLKAGRVSAALVHNGDPASGD  134 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCC-TTBGGGCC----CEECTTCEETTEEEEEECSSCGGGCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEecc-CcccccccchhhHHHhcCcCCceEEEEEccCCcccCCC
Confidence            468999999999999999999999        999999997 8 89                9999887662 2    23


Q ss_pred             eeeecceeeEeeCCchhHHHHHHH
Q 041557          113 LIFDHATQFFTVNDSRFGELVDVC  136 (189)
Q Consensus       113 ~~~~~g~~~~~~~~~~~~~~l~~~  136 (189)
                      ..++.|+..+......+..++..+
T Consensus       135 ~~~e~G~~~~~~~~~~~~~~~~~l  158 (721)
T 3ayj_A          135 TIYEVGAMRFPEIAGLTWHYASAA  158 (721)
T ss_dssp             EEEECSCCCEETTCHHHHHHHHHH
T ss_pred             cEEecCCEEecCccHHHHHHHHHh
Confidence            468888888876666666666654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.70  E-value=1.2e-08  Score=84.21  Aligned_cols=41  Identities=24%  Similarity=0.381  Sum_probs=36.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      .++||+|||||++||+||..|+++|++|+|||++  .+||.+.
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~--~~gG~~~   45 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG--IPGGQMA   45 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--CTTGGGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC--CCCCeee
Confidence            3689999999999999999999999999999984  6788753

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.70  E-value=7.1e-08  Score=85.75  Aligned_cols=41  Identities=17%  Similarity=0.284  Sum_probs=36.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...++|+|||||++||++|..|++.|++|+|||+. +.+|+.
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~-~~~g~~  130 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKR-IKFSRH  130 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC-SSCCCC
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEec-cccCCC
Confidence            35689999999999999999999999999999997 776643

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.70  E-value=5.1e-08  Score=85.09  Aligned_cols=45  Identities=18%  Similarity=0.203  Sum_probs=42.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeee
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRM  107 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~  107 (189)
                      ..++|+|||+|++||++|..|++.|++|+|+|++ +.+||++.+..
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~-~~~gg~~~s~~   49 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRN-PYYGGESSSIT   49 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCTTSCEEC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCccccccccc
Confidence            3578999999999999999999999999999998 99999998866

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.69  E-value=4.8e-08  Score=87.28  Aligned_cols=98  Identities=16%  Similarity=0.245  Sum_probs=62.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeee-eCCcceeeecceeeEeeCCchhHHHHHHHhhhh
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRM-IGRQPLIFDHATQFFTVNDSRFGELVDVCWKVV  140 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~  140 (189)
                      ..++|+|||||++|+++|..|+++|++|+|+|+   .+||++.... ...    + .+..+  ...+.+...+.      
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~---~~GG~~~~~~~~~~----~-~~~~~--~~~~~l~~~l~------  274 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE---RFGGQVLDTVDIEN----Y-ISVPK--TEGQKLAGALK------  274 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS---STTGGGTTCSCBCC----B-TTBSS--BCHHHHHHHHH------
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC---CCCCcccccccccc----c-CCCCC--CCHHHHHHHHH------
Confidence            467899999999999999999999999999985   4688764211 100    0 00000  01111111111      


Q ss_pred             hhcCchHHHHHHhccCCCcEEEeCceeEEEEEe---CCeEEEEeCCeee
Q 041557          141 LLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPF---NGMWYLGENGKTA  186 (189)
Q Consensus       141 ~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~---~~~w~l~~~~~~~  186 (189)
                               +.+..  .+++++++++|+.+..+   ++.|+|.+.++..
T Consensus       275 ---------~~~~~--~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~  312 (521)
T 1hyu_A          275 ---------AHVSD--YDVDVIDSQSASKLVPAATEGGLHQIETASGAV  312 (521)
T ss_dssp             ---------HHHHT--SCEEEECSCCEEEEECCSSTTSCEEEEETTSCE
T ss_pred             ---------HHHHH--cCCEEEcCCEEEEEEeccCCCceEEEEECCCCE
Confidence                     12221  37999999999999764   2379998876644

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.68  E-value=2.1e-07  Score=78.96  Aligned_cols=38  Identities=37%  Similarity=0.468  Sum_probs=33.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH-cC-CeEEEEecCCCCCCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDK-RG-VKSNVFDMGNPDLEG  101 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~-~g-~~v~v~e~~~~~~gg  101 (189)
                      ...||+|||||++|+++|+.|++ +| ++|+|||+. . +++
T Consensus        20 ~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~-~-~~~   59 (405)
T 2gag_B           20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG-W-LAG   59 (405)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSS-S-TTC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCC-C-CCC
Confidence            45799999999999999999999 99 999999997 5 443

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.66  E-value=5.3e-08  Score=84.86  Aligned_cols=38  Identities=21%  Similarity=0.198  Sum_probs=34.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC-----CeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG-----VKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g-----~~v~v~e~~~~~~gg  101 (189)
                      .+||+|||||++||++|..|++.|     ++|+|||+. +.+|.
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~-~~~g~   72 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQ-GDYRW   72 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESC-SSCCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecC-CCCCC
Confidence            468999999999999999999999     999999997 77763

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.64  E-value=2.1e-07  Score=84.70  Aligned_cols=38  Identities=29%  Similarity=0.394  Sum_probs=34.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      +..+||+|||||++|+++|+.|+++|++|+|||+. +.+
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~-~~~   58 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERS-AFP   58 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-CSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCC-CCC
Confidence            34689999999999999999999999999999996 444

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.60  E-value=2.9e-07  Score=81.78  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=32.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNP   97 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~   97 (189)
                      .+||+|||||++||++|+.|+++|++|+|||+. +
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~-~   40 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLERE-A   40 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS-C
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccC-C
Confidence            468999999999999999999999999999996 5

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.57  E-value=1.3e-07  Score=85.23  Aligned_cols=96  Identities=8%  Similarity=-0.011  Sum_probs=58.9

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHh
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCW  137 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~  137 (189)
                      .+..++|+|||||++||++|..|+++  |++|+|||+. +.++-.-       ..+.+..+..+. .....+...++.  
T Consensus        33 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~-~~~~~~~-------~~lp~~~~g~~~-~~~~~~~~~~~~--  101 (588)
T 3ics_A           33 RWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERG-EYISFAN-------CGLPYYIGGVIT-ERQKLLVQTVER--  101 (588)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSS-SCSSBCG-------GGHHHHHTTSSC-CGGGGBSSCHHH--
T ss_pred             cccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECC-CCccccC-------CCCchhhcCcCC-ChHHhhccCHHH--
Confidence            34567899999999999999999999  8999999997 6554110       000000010000 000001111111  


Q ss_pred             hhhhhcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          138 KVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       138 ~~~~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                                    +.. ..+++++++++|++++..++.+.+..
T Consensus       102 --------------~~~-~~gi~v~~~~~V~~id~~~~~v~v~~  130 (588)
T 3ics_A          102 --------------MSK-RFNLDIRVLSEVVKINKEEKTITIKN  130 (588)
T ss_dssp             --------------HHH-HTTCEEECSEEEEEEETTTTEEEEEE
T ss_pred             --------------HHH-hcCcEEEECCEEEEEECCCCEEEEee
Confidence                          110 12789999999999998888888764

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.56  E-value=1.7e-07  Score=82.19  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLE  100 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~g  100 (189)
                      .++|+|||||++||++|..|+++  |++|+|||++ +.++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~-~~~~   41 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQA-SRIS   41 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-----
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECC-Cccc
Confidence            36899999999999999999999  8999999997 6543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.55  E-value=3.1e-07  Score=80.21  Aligned_cols=36  Identities=19%  Similarity=0.318  Sum_probs=33.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLE  100 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~g  100 (189)
                      ++|+|||||++||++|..|+++  |++|+|||++ +.+|
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~-~~~g   40 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQ-ATVG   40 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSS-SCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECC-CCCc
Confidence            5899999999999999999999  8999999997 6655

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.50  E-value=7.8e-08  Score=84.89  Aligned_cols=42  Identities=21%  Similarity=0.364  Sum_probs=36.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      +..+||+|||||++|+++|..|+++|++|+|||+. +.+||.+
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~-~~~GG~~   64 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKR-STYGGTC   64 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSSHHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCCcc
Confidence            34689999999999999999999999999999997 8899863

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.47  E-value=3.5e-07  Score=81.77  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=32.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLE  100 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~g  100 (189)
                      ++|+|||||++||++|+.|+++  |++|+|||+. +.++
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~-~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERG-EYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSS-SCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECC-CCcc
Confidence            5799999999999999999998  7899999997 6654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.47  E-value=1.7e-07  Score=83.37  Aligned_cols=46  Identities=24%  Similarity=0.247  Sum_probs=41.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeee
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRM  107 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~  107 (189)
                      ...+||+|||+|++|+++|+.|++.|++|+|+|++ +.+||...+..
T Consensus        18 ~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~-~~~Gg~~~s~~   63 (475)
T 3p1w_A           18 GEHYDVIILGTGLKECILSGLLSHYGKKILVLDRN-PYYGGETASLN   63 (475)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCGGGCEEC
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEecc-CCCCCCccccc
Confidence            44679999999999999999999999999999998 99999987654

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.46  E-value=7.1e-07  Score=77.79  Aligned_cols=37  Identities=30%  Similarity=0.376  Sum_probs=33.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLE  100 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~g  100 (189)
                      .++|+|||||++||++|+.|++.  |++|+|||+. +.++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~-~~~~   41 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEAT-EWVS   41 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSS-SCCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECC-Cccc
Confidence            46899999999999999999998  7899999997 6554

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.45  E-value=1.2e-07  Score=80.68  Aligned_cols=36  Identities=28%  Similarity=0.397  Sum_probs=32.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ..||+|||||++|+++|+.|+++|++|+|+|+. ...
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~-~~~   39 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERGHRVLVLERH-TFF   39 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-CCC
Confidence            368999999999999999999999999999996 544

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.45  E-value=2.9e-07  Score=83.16  Aligned_cols=40  Identities=33%  Similarity=0.390  Sum_probs=36.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ..+|+|||+|++||++|+.|+++|++|+|||+. +.+||..
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~-~~~~~~~  165 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKE-PIPGGNT  165 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSS-SSSCTTG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCcch
Confidence            568999999999999999999999999999997 8887764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.44  E-value=3.7e-07  Score=81.43  Aligned_cols=43  Identities=26%  Similarity=0.205  Sum_probs=38.3

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ++..+||+|||||++|+++|+.|++.|++|+|||++ +.+||.+
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~-~~~GG~~   82 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRW-PFLGGSC   82 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSSCHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCCcc
Confidence            345689999999999999999999999999999997 7688864

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.43  E-value=2.5e-07  Score=77.92  Aligned_cols=34  Identities=26%  Similarity=0.480  Sum_probs=32.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...||+|||||++|+++|+.|+++|++|+|+|+.
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            4579999999999999999999999999999986

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.42  E-value=2.6e-07  Score=81.05  Aligned_cols=40  Identities=23%  Similarity=0.360  Sum_probs=35.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ..+||+|||||++|+++|+.|++.|++|+|||+. +.+||+
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~-~~~gG~   41 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKY-KGKEGK   41 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECC-BCTTSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCC-CccCCC
Confidence            3579999999999999999999999999999997 644443

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.41  E-value=2.4e-07  Score=78.24  Aligned_cols=37  Identities=27%  Similarity=0.351  Sum_probs=33.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      ..||+|||||++|+++|+.|+++|++|+|+|+. ...+
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~-~~~~   39 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF-DPPH   39 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCC
Confidence            468999999999999999999999999999996 4443

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.41  E-value=2.1e-07  Score=85.82  Aligned_cols=42  Identities=33%  Similarity=0.510  Sum_probs=38.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ...++|+|||||++||++|+.|+++|++|+|||++ +.+||.+
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~-~~~GG~~  430 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAG-RDLGGRV  430 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSS-SSSCTHH
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCCEe
Confidence            45689999999999999999999999999999997 8888864

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.40  E-value=1.9e-07  Score=82.86  Aligned_cols=89  Identities=17%  Similarity=0.119  Sum_probs=59.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||||++||++|+.|+++ ++|+|||++ +.+||.+......      ..+...      ...+++..+      
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~-~~~GG~~~~~~~~------~~g~~~------~~~~~~~~l------  167 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEER-GWLGGDMWLKGIK------QEGFNK------DSRKVVEEL------  167 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTT-SSSSCSGGGTCSE------ETTTTE------EHHHHHHHH------
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCC-CCCCCeeeccccc------cCCCCC------CHHHHHHHH------
Confidence            46899999999999999999999 999999997 8899886431100      001000      111221111      


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEE
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLG  180 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~  180 (189)
                            .+.+   ..++++++++.|.++...++.|.+.
T Consensus       168 ------~~~l---~~~v~~~~~~~v~~i~~~~~~~~~~  196 (493)
T 1y56_A          168 ------VGKL---NENTKIYLETSALGVFDKGEYFLVP  196 (493)
T ss_dssp             ------HHTC---CTTEEEETTEEECCCEECSSSEEEE
T ss_pred             ------HHHH---hcCCEEEcCCEEEEEEcCCcEEEEE
Confidence                  1111   2378999999999988777666553

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.40  E-value=1.2e-07  Score=83.27  Aligned_cols=41  Identities=29%  Similarity=0.244  Sum_probs=38.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      .+||+|||||++|+++|..|++.|++|+|||+. +.+||.|.
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~-~~~GG~~~   44 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPK-GELGGNCL   44 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTT-SSSSHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCCccc
Confidence            468999999999999999999999999999986 89999864

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.39  E-value=6.4e-07  Score=76.91  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHH---cCCeEEEEecCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDK---RGVKSNVFDMGNPD   98 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~---~g~~v~v~e~~~~~   98 (189)
                      ++|+|||||++||++|..|++   .|++|+|||++ +.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~-~~   38 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKS-RF   38 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESS-SE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCC-CC
Confidence            479999999999999999999   89999999997 54

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.38  E-value=7.5e-07  Score=76.80  Aligned_cols=38  Identities=24%  Similarity=0.416  Sum_probs=33.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCe--EEEEecCCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVK--SNVFDMGNPDLE  100 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~--v~v~e~~~~~~g  100 (189)
                      ..++|+|||||++|+++|..|+++|++  |+|+|+. +.++
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~-~~~~   47 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGRE-PEIP   47 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESS-SSCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecC-CCCC
Confidence            357899999999999999999999988  9999997 5543

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.37  E-value=3.6e-07  Score=84.88  Aligned_cols=43  Identities=21%  Similarity=0.299  Sum_probs=38.9

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ....++|+|||||++||++|+.|+++|++|+|||+. +.+||.+
T Consensus       386 ~~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~-~~~GG~~  428 (729)
T 1o94_A          386 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTA-EKIGGHL  428 (729)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSTTTTH
T ss_pred             ccCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-CCcCCee
Confidence            345689999999999999999999999999999997 8888875

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.37  E-value=3.7e-07  Score=81.22  Aligned_cols=33  Identities=21%  Similarity=0.029  Sum_probs=26.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      ..+||+|||+||+||++|..|.+.|...+++|+
T Consensus        38 ~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~   70 (501)
T 4b63_A           38 ELHDLLCVGFGPASLAIAIALHDALDPRLNKSA   70 (501)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC
T ss_pred             CcCcEEEEcccHHHHHHHHHHHhcCCCceEEec
Confidence            457899999999999999999987765444444

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.37  E-value=3.9e-07  Score=79.75  Aligned_cols=42  Identities=26%  Similarity=0.375  Sum_probs=38.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ..+||+|||||++|+++|..|++.|++|+|||+. +.+||.+.
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~-~~~GG~~~   46 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKR-GALGGTCL   46 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECS-SSSCCSHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-CCcccccc
Confidence            3578999999999999999999999999999997 88998753

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.36  E-value=2.8e-07  Score=84.66  Aligned_cols=43  Identities=26%  Similarity=0.493  Sum_probs=38.6

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ....++|+|||||++|+.+|..|+++|++|+|||+. +.+||.+
T Consensus       370 ~~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~-~~~gg~~  412 (671)
T 1ps9_A          370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAH-SEIGGQF  412 (671)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS-SSSCTTH
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCCee
Confidence            345689999999999999999999999999999997 8888874

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.36  E-value=2.8e-07  Score=81.88  Aligned_cols=41  Identities=20%  Similarity=0.302  Sum_probs=37.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ...||+|||+|++||++|+.|+++|++|+|+||. +.+||..
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~-~~~GG~s   80 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERT-SGWGGAT   80 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCTTG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CCCCCcc
Confidence            4578999999999999999999999999999997 8888764

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.35  E-value=2.7e-07  Score=80.91  Aligned_cols=40  Identities=23%  Similarity=0.373  Sum_probs=36.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|..|++.|++|+|||+. +.+||.+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~~GG~~   41 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKR-GALGGTC   41 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSSHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-CCcCCcC
Confidence            468999999999999999999999999999997 7898864

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.34  E-value=1.7e-06  Score=74.40  Aligned_cols=35  Identities=23%  Similarity=0.276  Sum_probs=32.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC--eEEEEecCCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV--KSNVFDMGNPDL   99 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~~~~~   99 (189)
                      ++|+|||||++|+++|..|+++|+  +|+|||++ +..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~-~~~   38 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDE-KHL   38 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCS-SSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCC-CCC
Confidence            689999999999999999999999  89999997 543

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.33  E-value=4.8e-07  Score=81.49  Aligned_cols=41  Identities=22%  Similarity=0.381  Sum_probs=37.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ...||+|||+|++||++|+.|+++|++|+|||+. +.+||..
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~-~~~gg~s  165 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKE-PVIGGNA  165 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCTTG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CCCCCch
Confidence            3579999999999999999999999999999997 8887763

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.32  E-value=3.1e-07  Score=80.96  Aligned_cols=39  Identities=15%  Similarity=0.187  Sum_probs=35.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++||++|+.|+++|++|+|||+  ..+||.+
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk--~~~GG~~   64 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEE--YRIGGTC   64 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES--SCTTHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC--CCCCCce
Confidence            57999999999999999999999999999998  4788864

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.32  E-value=2.3e-06  Score=74.48  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=32.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~~~~   98 (189)
                      .++|+|||||++|+++|..|+++|+  +|+|||+. +.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~-~~   40 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA-TV   40 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC-CS
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECC-CC
Confidence            5789999999999999999999998  79999986 54

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.31  E-value=5.3e-07  Score=77.12  Aligned_cols=40  Identities=20%  Similarity=0.356  Sum_probs=36.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++||++|+.|+++  |++|+|+|+. ..+||..
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~-~~~GGg~  120 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAG-VAPGGGA  120 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESS-SSCCTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCC-CccCCcc
Confidence            57999999999999999999998  9999999997 7777653

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.31  E-value=1.7e-06  Score=74.67  Aligned_cols=36  Identities=31%  Similarity=0.493  Sum_probs=32.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCe--EEEEecCCCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVK--SNVFDMGNPDLE  100 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~--v~v~e~~~~~~g  100 (189)
                      ++|+|||||++|+++|..|+++|++  |+|||+. +..+
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~-~~~~   40 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDE-PHLP   40 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECS-SSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECC-CCCC
Confidence            5899999999999999999999987  9999997 5544

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.30  E-value=4.8e-07  Score=80.70  Aligned_cols=42  Identities=36%  Similarity=0.407  Sum_probs=36.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC--------CCCcCc
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNP--------DLEGRM  103 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~--------~~gg~~  103 (189)
                      ...+||+|||||++|+++|..|++.|++|+|||+. +        .+||.+
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~-~~~~~~~~~~~GGtc   79 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFV-TPTPLGTRWGLGGTC   79 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC-CCCTTCCCCCTTCHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecc-CccccccCCCccccc
Confidence            35689999999999999999999999999999984 3        677753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.30  E-value=1e-06  Score=75.78  Aligned_cols=38  Identities=16%  Similarity=0.148  Sum_probs=33.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      ...+|+|||||++|+++|..|...+.+|+|||++ +.++
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~-~~~~   45 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSE-KYLP   45 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSS-SSCC
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECC-CCCC
Confidence            4567999999999999999998889999999997 5544

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.30  E-value=3.1e-07  Score=80.62  Aligned_cols=40  Identities=23%  Similarity=0.404  Sum_probs=37.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|..|++.|++|+|||+. +.+||.+
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~~GG~~   45 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKN-ETLGGTC   45 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-SSSSHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCcCCcc
Confidence            478999999999999999999999999999997 7899875

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.29  E-value=3.7e-07  Score=79.94  Aligned_cols=39  Identities=18%  Similarity=0.198  Sum_probs=35.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|+.|+++|++|+|||+  ..+||.+
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk--~~~GG~~   43 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE--FRYGGTC   43 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES--SCTTHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC--CCCCCcc
Confidence            47899999999999999999999999999998  4788854

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.29  E-value=4.1e-07  Score=79.42  Aligned_cols=39  Identities=26%  Similarity=0.373  Sum_probs=36.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      +||+|||||++|+++|..|++.|++|+|||++ +.+||.+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~~~GG~~   40 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKE-KALGGTC   40 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSSHHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCC-CCCCCcc
Confidence            58999999999999999999999999999997 7888864

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.28  E-value=4.7e-07  Score=78.75  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +.++|+|||||++||++|+.|+++|++|+|||+.
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~   54 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDR   54 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCC
Confidence            3478999999999999999999999999999986

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.28  E-value=6.6e-07  Score=76.21  Aligned_cols=35  Identities=20%  Similarity=0.245  Sum_probs=32.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDL   99 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~   99 (189)
                      .+|+|||||++||++|+.|+++  |++|+|||+. +.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~-~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKN-DEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSS-CTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECC-CCC
Confidence            3799999999999999999999  9999999997 655

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.28  E-value=1e-06  Score=77.88  Aligned_cols=38  Identities=18%  Similarity=0.272  Sum_probs=33.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC---CeEEEEecCCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG---VKSNVFDMGNPDLE  100 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g---~~v~v~e~~~~~~g  100 (189)
                      ..++|+|||||++|+++|..|++.|   ++|+|||++ +.++
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~   74 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQN-SNIS   74 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSS-SCCS
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECC-CCCC
Confidence            3579999999999999999999998   999999997 5554

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.28  E-value=7.2e-07  Score=79.09  Aligned_cols=37  Identities=19%  Similarity=0.247  Sum_probs=33.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      ..||+|||||++|+++|+.|+++|++|+|+|+. +..+
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~-~~~~   39 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQ-DLAC   39 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSS-STTC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECC-CCCC
Confidence            478999999999999999999999999999996 5433

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.27  E-value=4.8e-07  Score=79.40  Aligned_cols=40  Identities=28%  Similarity=0.413  Sum_probs=36.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|..|+++|++|+|||+. +.+||.+
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~-~~~GG~~   44 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKR-GKLGGTC   44 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSSHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCcCCcc
Confidence            468999999999999999999999999999997 7888864

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.26  E-value=4.8e-07  Score=75.84  Aligned_cols=31  Identities=29%  Similarity=0.431  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC------CeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRG------VKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g------~~v~v~e~~   95 (189)
                      ||+|||||++||++|+.|+++|      ++|+|+|+.
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~   38 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADR   38 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESS
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECC
Confidence            7999999999999999999998      999999986

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.26  E-value=8.7e-06  Score=69.38  Aligned_cols=86  Identities=12%  Similarity=-0.024  Sum_probs=61.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|+.|+.+|..|++.|.+|+|+|+. +.+..+.                     .++.+.+.+.+       
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~~~~~---------------------~~~~~~~~l~~-------  195 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPC-EQVMPGL---------------------LHPAAAKAVQA-------  195 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-SSSSTTT---------------------SCHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecC-cchhhcc---------------------cCHHHHHHHHH-------
Confidence            478999999999999999999999999999986 4432211                     01122222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                              .+..  .|++++++++|++++.+++++.|.+.+++.+
T Consensus       196 --------~l~~--~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i  230 (384)
T 2v3a_A          196 --------GLEG--LGVRFHLGPVLASLKKAGEGLEAHLSDGEVI  230 (384)
T ss_dssp             --------HHHT--TTCEEEESCCEEEEEEETTEEEEEETTSCEE
T ss_pred             --------HHHH--cCCEEEeCCEEEEEEecCCEEEEEECCCCEE
Confidence                    2221  3899999999999998888888887766543

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.26  E-value=7.4e-07  Score=78.04  Aligned_cols=40  Identities=28%  Similarity=0.506  Sum_probs=35.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ..+||+|||||++|+++|+.|++.|++|+|||++  .+||.+
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~--~~GG~~   42 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG--TIGGTC   42 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS--STTHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC--CCCccc
Confidence            3578999999999999999999999999999985  577754

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.26  E-value=7e-07  Score=75.82  Aligned_cols=41  Identities=22%  Similarity=0.305  Sum_probs=36.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~gg~~  103 (189)
                      ...||+|||+|++||++|+.|+++  |++|+|||+. +.+||..
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~-~~~ggg~  106 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS-VAPGGGS  106 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS-SSCCTTT
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecC-ccccccc
Confidence            346899999999999999999999  9999999997 7887653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.25  E-value=7.2e-07  Score=78.37  Aligned_cols=40  Identities=30%  Similarity=0.422  Sum_probs=36.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ..+||+|||||++|+++|..|++.|++|+|||++  .+||.+
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~--~~GG~~   58 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESH--KLGGTC   58 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--CTTHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC--CCCCcc
Confidence            4589999999999999999999999999999974  778764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.25  E-value=7.4e-07  Score=80.24  Aligned_cols=40  Identities=25%  Similarity=0.385  Sum_probs=36.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||+|++||++|+.|+++|++|+|||+. +.+||.
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~-~~~gg~  159 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKA-PFSGGN  159 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSS-SSSCTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CCCCCc
Confidence            3568999999999999999999999999999997 777765

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.24  E-value=8.7e-07  Score=80.32  Aligned_cols=39  Identities=23%  Similarity=0.388  Sum_probs=35.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR------GVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~------g~~v~v~e~~~~~~gg~  102 (189)
                      ..||+|||||++||++|+.|++.      |++|+|||+. ..+|+.
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~-~~~g~~   79 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKA-AHIGAH   79 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSS-SSTTTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCC-CCCCCc
Confidence            57999999999999999999999      9999999997 777654

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.24  E-value=7.9e-07  Score=80.22  Aligned_cols=40  Identities=25%  Similarity=0.459  Sum_probs=35.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ..+||+|||||++|+++|+.|+++|++|+|+|++ +..+|.
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~-d~~~Gt   56 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMN-DFASGT   56 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-STTCSG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECC-CCCCCc
Confidence            3579999999999999999999999999999997 655543

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.24  E-value=6.3e-07  Score=79.08  Aligned_cols=41  Identities=34%  Similarity=0.421  Sum_probs=35.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEec--------CCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM--------GNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~--------~~~~~gg~~  103 (189)
                      ..+||+|||||++|+++|..|++.|++|+|+|+        . ..+||.+
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~-~~~GGtc   53 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTK-WGLGGTC   53 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCC-CCTTCHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEeccccccccc-CCcCCee
Confidence            357999999999999999999999999999997        3 4678753

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.23  E-value=1e-05  Score=70.58  Aligned_cols=84  Identities=11%  Similarity=0.111  Sum_probs=60.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|++|+.+|..|++.|.+|+|+|+. +.+...                      .++.+.+.+.+       
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~-~~~l~~----------------------~~~~~~~~l~~-------  216 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYM-DRILPT----------------------MDLEVSRAAER-------  216 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSCTT----------------------SCHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-Cccccc----------------------cCHHHHHHHHH-------
Confidence            468999999999999999999999999999986 432110                      11223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA  186 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~  186 (189)
                              .+..  .|++++++++|++++.+++++.+.+.++..
T Consensus       217 --------~l~~--~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~  250 (455)
T 2yqu_A          217 --------VFKK--QGLTIRTGVRVTAVVPEAKGARVELEGGEV  250 (455)
T ss_dssp             --------HHHH--HTCEEECSCCEEEEEEETTEEEEEETTSCE
T ss_pred             --------HHHH--CCCEEEECCEEEEEEEeCCEEEEEECCCeE
Confidence                    1111  279999999999999888888887765544

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.22  E-value=7.3e-07  Score=78.96  Aligned_cols=39  Identities=26%  Similarity=0.234  Sum_probs=35.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|..|++.|++|+|+|++  .+||.+
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~--~~GGtc   46 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG--AYGTTC   46 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS--CSSCHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC--CCCCcc
Confidence            479999999999999999999999999999996  488864

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.22  E-value=6.6e-07  Score=77.54  Aligned_cols=34  Identities=26%  Similarity=0.284  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~   95 (189)
                      ...||+|||||++|+++|+.|+++| ++|+|+|+.
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~   56 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG   56 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccC
Confidence            4578999999999999999999999 999999993

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.21  E-value=1e-05  Score=70.83  Aligned_cols=80  Identities=14%  Similarity=0.126  Sum_probs=58.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|+.|+.+|..|++.|.+|+|+|+. +.+...                      .++.+.+.+.+       
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~l~~----------------------~~~~~~~~l~~-------  218 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYM-PEILPQ----------------------GDPETAALLRR-------  218 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSSTT----------------------SCHHHHHHHHH-------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcC-Cccccc----------------------cCHHHHHHHHH-------
Confidence            368999999999999999999999999999986 443211                      11223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeC
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGEN  182 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~  182 (189)
                              .+..  .|++++++++|++++.+++.+.|.+.
T Consensus       219 --------~l~~--~gV~i~~~~~v~~i~~~~~~~~v~~~  248 (464)
T 2eq6_A          219 --------ALEK--EGIRVRTKTKAVGYEKKKDGLHVRLE  248 (464)
T ss_dssp             --------HHHH--TTCEEECSEEEEEEEEETTEEEEEEE
T ss_pred             --------HHHh--cCCEEEcCCEEEEEEEeCCEEEEEEe
Confidence                    1211  38999999999999988777777653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.21  E-value=3e-06  Score=73.82  Aligned_cols=36  Identities=11%  Similarity=0.140  Sum_probs=32.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLE  100 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~g  100 (189)
                      +||+|||||++|+++|..|++.  |++|+|||+. +.++
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~-~~~~   38 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMN-DNIS   38 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESS-SCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECC-CCCC
Confidence            4799999999999999999998  9999999997 5543

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.20  E-value=1.1e-06  Score=75.51  Aligned_cols=37  Identities=24%  Similarity=0.298  Sum_probs=33.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLE  100 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~g  100 (189)
                      ..||+|||||++|+++|+.|+++  |++|+|||+. ...+
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~-~~~~   74 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG-GLPN   74 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS-CSSC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC-CCCC
Confidence            47899999999999999999999  9999999986 4433

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.19  E-value=1.4e-06  Score=78.74  Aligned_cols=38  Identities=29%  Similarity=0.497  Sum_probs=33.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ..||+|||||++|+++|+.|+++|++|+|+|+. +..+|
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~-~~~~G   69 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQ-DFAEG   69 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSS-STTCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC-CCCCC
Confidence            478999999999999999999999999999996 54443

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.19  E-value=3.6e-06  Score=74.12  Aligned_cols=36  Identities=19%  Similarity=0.313  Sum_probs=32.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLE  100 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~g  100 (189)
                      .+|+|||||++|+++|..|++.  |++|+|||+. +..+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~-~~~~   74 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKG-EIYS   74 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSS-SCCS
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECC-CCCC
Confidence            5899999999999999999997  8999999997 5543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.19  E-value=9.8e-07  Score=77.48  Aligned_cols=39  Identities=26%  Similarity=0.323  Sum_probs=35.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|..|++.|++|+|||++  .+||.+
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~--~~GG~~   42 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK--ALGGTC   42 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--CTTHHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC--CCCCcC
Confidence            578999999999999999999999999999985  677764

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.19  E-value=9.1e-07  Score=77.94  Aligned_cols=40  Identities=23%  Similarity=0.351  Sum_probs=36.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|..|++.|++|+|||+. +.+||.+
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~~GG~~   45 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERY-KTLGGVC   45 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SCSSHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCCce
Confidence            468999999999999999999999999999997 7888764

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.18  E-value=7.5e-07  Score=78.79  Aligned_cols=39  Identities=26%  Similarity=0.347  Sum_probs=35.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc---CCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR---GVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~---g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|+.|++.   |++|+|||++ + +||.+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~-~-~GG~~   43 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD-G-IGGAA   43 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS-C-TTHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCC-C-cCCcc
Confidence            36899999999999999999999   9999999997 5 88753

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.18  E-value=8.6e-07  Score=78.09  Aligned_cols=40  Identities=28%  Similarity=0.365  Sum_probs=35.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ..+||+|||||++|+++|..|++.|++|+|||++  .+||.+
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~--~~GG~~   49 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK--ALGGTC   49 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS--CTTHHH
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC--CcCCcC
Confidence            3578999999999999999999999999999985  577764

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.18  E-value=1.3e-06  Score=76.94  Aligned_cols=33  Identities=33%  Similarity=0.516  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      ..+||+|||||++|+++|..|+++|++|+|+|+
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk   40 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDF   40 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEe
Confidence            468999999999999999999999999999994

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.17  E-value=1.5e-06  Score=77.99  Aligned_cols=37  Identities=32%  Similarity=0.363  Sum_probs=33.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      ..+|+|||||++||++|..|+++|++|+|||+. +.++
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~-~~~~   62 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQT-DGTI   62 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCC-CCCC
Confidence            468999999999999999999999999999997 6654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.17  E-value=1.2e-06  Score=77.59  Aligned_cols=39  Identities=26%  Similarity=0.380  Sum_probs=35.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|..|++.|++|+|||++  ..||.+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~--~~GG~c   40 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKS--RLGGTC   40 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--STTHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC--CcCccc
Confidence            468999999999999999999999999999996  477764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.17  E-value=1.2e-06  Score=77.63  Aligned_cols=40  Identities=20%  Similarity=0.240  Sum_probs=35.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH-cCCeEEEEe--------cCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDK-RGVKSNVFD--------MGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~-~g~~v~v~e--------~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|+.|++ .|++|+|||        +. ..+||.+
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~-~~~GG~c   51 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHY-AALGGTC   51 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTB-SCTTCHH
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccC-CCcCccc
Confidence            4689999999999999999999 999999999        33 5788864

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.17  E-value=4.2e-06  Score=72.79  Aligned_cols=36  Identities=11%  Similarity=0.132  Sum_probs=32.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLE  100 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~g  100 (189)
                      .||+|||||++|+++|..|++.  |++|+|||++ +.++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~-~~~~   38 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG-DFIS   38 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS-SSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECC-CccC
Confidence            3799999999999999999998  9999999997 6554

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.15  E-value=9.7e-07  Score=77.16  Aligned_cols=39  Identities=26%  Similarity=0.333  Sum_probs=35.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|..|++.|++|+|||++  .+||.+
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~--~~GG~~   42 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK--ELGGTC   42 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS--CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC--CCCCcc
Confidence            468999999999999999999999999999985  577764

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.14  E-value=1.4e-06  Score=76.29  Aligned_cols=40  Identities=25%  Similarity=0.368  Sum_probs=36.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      .+||+|||||++|+++|..|++.|++|+|||++  .+||.+.
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~--~~GG~~~   44 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ--ALGGTCL   44 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS--CTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC--CCCCcCC
Confidence            478999999999999999999999999999984  7888753

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.14  E-value=1.3e-06  Score=76.96  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=36.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH-c------CCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDK-R------GVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~-~------g~~v~v~e~~~~~~gg~~  103 (189)
                      .++|+|||||++|+.+|..|++ +      |++|+|||+. +.+||.+
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~-~~~gg~~   49 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEML-PTPWGLV   49 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESS-SSCSTHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecC-CCCCCcc
Confidence            4689999999999999999999 7      9999999997 7888753

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.12  E-value=9.9e-07  Score=78.20  Aligned_cols=40  Identities=23%  Similarity=0.295  Sum_probs=35.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH-cCCeEEEEe--------cCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDK-RGVKSNVFD--------MGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~-~g~~v~v~e--------~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|+.|++ .|++|+|||        +. ..+||.+
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~-~~~GG~~   55 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFY-AALGGTC   55 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTB-CBTTHHH
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccC-CCCCCee
Confidence            5789999999999999999999 999999999        33 5788864

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.12  E-value=1.5e-06  Score=76.28  Aligned_cols=39  Identities=23%  Similarity=0.339  Sum_probs=35.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|..|++.|++|+|||++ + +||.+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~-~-~GG~~   44 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAG-E-VGGVC   44 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-C-TTHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC-C-CCCCC
Confidence            478999999999999999999999999999996 5 88865

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.12  E-value=2.7e-06  Score=75.93  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=31.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH---cCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDK---RGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~---~g~~v~v~e~~   95 (189)
                      .++|+|||||++|+++|+.|++   .|++|+|||+.
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~   40 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESA   40 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCC
Confidence            5789999999999999999999   99999999985

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.10  E-value=2.4e-06  Score=78.10  Aligned_cols=41  Identities=29%  Similarity=0.290  Sum_probs=36.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ..+||+|||+|++|+++|+.|++.|++|+|+|+. +..||..
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~-~~~gg~~   85 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIG-EIDSGLK   85 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-CCCSSSS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEecc-CCCCCcc
Confidence            3579999999999999999999999999999997 7777644

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.10  E-value=3.9e-06  Score=73.22  Aligned_cols=35  Identities=17%  Similarity=0.429  Sum_probs=30.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDL   99 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~   99 (189)
                      ++|+|||||++|+++|..|++.|  .+|+|||++ +..
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~-~~~   37 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKD-RDM   37 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESS-SCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCC-CCC
Confidence            46999999999999999999998  469999997 543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.10  E-value=2e-06  Score=82.20  Aligned_cols=41  Identities=24%  Similarity=0.379  Sum_probs=38.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      .+||+|||+|++|+++|..|++.|++|+|||++ +.+||++.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~-~~~GG~~~  168 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDER-AEAGGTLL  168 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSSGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCceec
Confidence            468999999999999999999999999999997 88998775

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.10  E-value=3e-05  Score=67.99  Aligned_cols=83  Identities=19%  Similarity=0.080  Sum_probs=60.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|..|+.+|..|++.|.+|+|+++. +.+...            +          ++.+.+.+.+       
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~-~~~l~~------------~----------~~~~~~~l~~-------  215 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALE-DRLLFQ------------F----------DPLLSATLAE-------  215 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSSTT------------S----------CHHHHHHHHH-------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcC-Cccccc------------c----------CHHHHHHHHH-------
Confidence            468999999999999999999999999999986 432211            1          1122222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKT  185 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~  185 (189)
                              .+..  .|++++++++|++++.+++++.|.+.+++
T Consensus       216 --------~l~~--~gv~i~~~~~v~~i~~~~~~~~v~~~~G~  248 (463)
T 2r9z_A          216 --------NMHA--QGIETHLEFAVAALERDAQGTTLVAQDGT  248 (463)
T ss_dssp             --------HHHH--TTCEEESSCCEEEEEEETTEEEEEETTCC
T ss_pred             --------HHHH--CCCEEEeCCEEEEEEEeCCeEEEEEeCCc
Confidence                    1211  38999999999999987777888877665

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.10  E-value=2.1e-06  Score=77.89  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=34.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ..||+|||+|++||++|+.|+++|.+|+|+||. ...+|
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~-~~~~g   44 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKV-FPTRS   44 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CGGGS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCC
Confidence            468999999999999999999999999999997 65543

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.09  E-value=2.4e-06  Score=74.54  Aligned_cols=39  Identities=23%  Similarity=0.431  Sum_probs=35.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|..|++.|++|+|||+.  .+||.+
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~--~~gG~~   41 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG--NLGGVC   41 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC--CCCCcC
Confidence            368999999999999999999999999999985  677764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.09  E-value=2.4e-06  Score=75.27  Aligned_cols=40  Identities=20%  Similarity=0.287  Sum_probs=36.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~~  103 (189)
                      .++|+|||+|++|+.+|..|+++|  ++|+|||+. +.+||.+
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~-~~~gg~~   47 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ-LVPFGLV   47 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS-SSSCTHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCC-CcCCcee
Confidence            468999999999999999999999  999999997 7888654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.09  E-value=4.8e-06  Score=71.06  Aligned_cols=33  Identities=15%  Similarity=0.313  Sum_probs=30.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~   95 (189)
                      .|+|+|||||++|+++|.+|++.+  .+|+|+|+.
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~   36 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPN   36 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCC
Confidence            578999999999999999999877  589999986

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.09  E-value=2.6e-05  Score=67.91  Aligned_cols=79  Identities=14%  Similarity=0.170  Sum_probs=57.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|+.|+.+|..|++.|.+|+|+|+. +.+...            +          ++.+.+.+..       
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------~~~~~~~l~~-------  219 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGA-GEILSG------------F----------EKQMAAIIKK-------  219 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-SSSSTT------------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-Cccccc------------c----------CHHHHHHHHH-------
Confidence            478999999999999999999999999999986 443211            1          1222222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                              .+..  .|++++++++|++++.+++++.+.+
T Consensus       220 --------~l~~--~gv~i~~~~~v~~i~~~~~~~~v~~  248 (455)
T 1ebd_A          220 --------RLKK--KGVEVVTNALAKGAEEREDGVTVTY  248 (455)
T ss_dssp             --------HHHH--TTCEEEESEEEEEEEEETTEEEEEE
T ss_pred             --------HHHH--CCCEEEeCCEEEEEEEeCCeEEEEE
Confidence                    1111  3899999999999998777766654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.08  E-value=2.6e-06  Score=76.57  Aligned_cols=38  Identities=42%  Similarity=0.506  Sum_probs=33.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ..||+|||+|++||++|+.|++ |.+|+|+|+. ...+|.
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~-~~~~g~   45 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKG-PVTEGS   45 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSS-CTTC--
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCcEEEEECC-CCCCCC
Confidence            5799999999999999999999 9999999997 665543

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.07  E-value=2.1e-06  Score=75.88  Aligned_cols=33  Identities=27%  Similarity=0.360  Sum_probs=30.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH---cCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDK---RGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~---~g~~v~v~e~~   95 (189)
                      .++|+|||||++|+++|+.|++   .|++|+|+|+.
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~   37 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESG   37 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC-
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence            3689999999999999999999   99999999986

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.06  E-value=2.8e-05  Score=68.11  Aligned_cols=80  Identities=14%  Similarity=0.184  Sum_probs=56.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+|+|+. +.+...            +          ++.+.+.+.+       
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------~~~~~~~l~~-------  232 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQ-PQIGAS------------M----------DGEVAKATQK-------  232 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSSSS------------S----------CHHHHHHHHH-------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeC-Cccccc------------c----------CHHHHHHHHH-------
Confidence            478999999999999999999999999999986 443221            1          1222222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEE--eCCeEEEEeC
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEP--FNGMWYLGEN  182 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~--~~~~w~l~~~  182 (189)
                              .+..  .|++++++++|++++.  +++.+.|.+.
T Consensus       233 --------~l~~--~gv~i~~~~~v~~i~~~~~~~~~~v~~~  264 (478)
T 1v59_A          233 --------FLKK--QGLDFKLSTKVISAKRNDDKNVVEIVVE  264 (478)
T ss_dssp             --------HHHH--TTCEEECSEEEEEEEEETTTTEEEEEEE
T ss_pred             --------HHHH--CCCEEEeCCEEEEEEEecCCCeEEEEEE
Confidence                    1111  3899999999999987  5566666553

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.06  E-value=2.2e-06  Score=78.36  Aligned_cols=36  Identities=22%  Similarity=0.284  Sum_probs=33.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDK-RGVKSNVFDMGNPDL   99 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~-~g~~v~v~e~~~~~~   99 (189)
                      ..+|+|||||++||++|+.|++ .|++|+|||+. +.+
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~-~~~   68 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQK-EGP   68 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSS-SSC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCC-CCC
Confidence            5689999999999999999999 99999999996 554

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.06  E-value=3e-05  Score=67.69  Aligned_cols=84  Identities=13%  Similarity=0.084  Sum_probs=59.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+.+|..|++.|.+|+|+|+. +.+...            +          ++.+.+.+.+       
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------~~~~~~~l~~-------  216 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMF-DAPLPS------------F----------DPMISETLVE-------  216 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSSTT------------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeC-Cchhhh------------h----------hHHHHHHHHH-------
Confidence            468999999999999999999999999999986 442211            1          1122222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe-EEEEeCCeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM-WYLGENGKTA  186 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~-w~l~~~~~~~  186 (189)
                              .+..  .|++++++++|++++.++++ +.|.+.+++.
T Consensus       217 --------~l~~--~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~  251 (450)
T 1ges_A          217 --------VMNA--EGPQLHTNAIPKAVVKNTDGSLTLELEDGRS  251 (450)
T ss_dssp             --------HHHH--HSCEEECSCCEEEEEECTTSCEEEEETTSCE
T ss_pred             --------HHHH--CCCEEEeCCEEEEEEEeCCcEEEEEECCCcE
Confidence                    1111  28999999999999876543 7777766543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.06  E-value=2.2e-06  Score=75.00  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=34.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++|+++|..|++.|++|+|||+.  .+||.+
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~--~~gG~~   41 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK--YWGGVC   41 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS--CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC--CCCCcc
Confidence            368999999999999999999999999999985  567654

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.06  E-value=3.9e-06  Score=75.21  Aligned_cols=34  Identities=24%  Similarity=0.277  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH---cCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDK---RGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~---~g~~v~v~e~~   95 (189)
                      ..++|+|||||++|+++|..|++   .|++|+|||+.
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~   60 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAP   60 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCC
Confidence            35789999999999999999999   99999999985

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.06  E-value=2.9e-06  Score=78.21  Aligned_cols=37  Identities=27%  Similarity=0.427  Sum_probs=33.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      ..||+|||+|++||++|+.|+++|++|+|+|+. ...+
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~-~~~~   41 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLI-PVKR   41 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSS-CGGG
T ss_pred             cccEEEECchHHHHHHHHHHHHCCCcEEEEecc-CCCC
Confidence            468999999999999999999999999999997 5543

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.05  E-value=3.5e-06  Score=75.06  Aligned_cols=34  Identities=21%  Similarity=0.231  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH------------cCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDK------------RGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~------------~g~~v~v~e~~   95 (189)
                      ..++|+|||||++|+++|..|++            .|++|+|||+.
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~   51 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESP   51 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCC
Confidence            35789999999999999999999            99999999985

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.05  E-value=3e-06  Score=77.54  Aligned_cols=38  Identities=18%  Similarity=0.193  Sum_probs=33.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      ..||+|||+|++||++|+.|+++|++|+|+|+. ...+|
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~-~~~~g   55 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKL-FPTRS   55 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CGGGS
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEecc-CCCCC
Confidence            468999999999999999999999999999996 54443

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.04  E-value=4.5e-06  Score=78.35  Aligned_cols=36  Identities=39%  Similarity=0.535  Sum_probs=32.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMGNPD   98 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~~~~   98 (189)
                      ...||+|||||++|+++|+.|+++|+ +|+|+|+. ..
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~-~~   39 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTRGWNNITVLDQG-PL   39 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSS-CT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCC-CC
Confidence            35789999999999999999999998 99999997 54

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.04  E-value=2.7e-05  Score=67.63  Aligned_cols=82  Identities=17%  Similarity=0.168  Sum_probs=56.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|++|+.+|..|++.|.+|+|+|+. +.+..+.           +          ++.+.+.+..       
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~-~~~l~~~-----------~----------~~~~~~~l~~-------  199 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL-DRPLGVY-----------L----------DKEFTDVLTE-------  199 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-SSTTTTT-----------C----------CHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecC-ccccccc-----------C----------CHHHHHHHHH-------
Confidence            578999999999999999999999999999986 5433210           1          1122222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCC
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG  183 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~  183 (189)
                              .+..  .|++++++++|++++.++..+.+.+++
T Consensus       200 --------~l~~--~gv~i~~~~~v~~i~~~~~v~~v~~~~  230 (447)
T 1nhp_A          200 --------EMEA--NNITIATGETVERYEGDGRVQKVVTDK  230 (447)
T ss_dssp             --------HHHT--TTEEEEESCCEEEEECSSBCCEEEESS
T ss_pred             --------HHHh--CCCEEEcCCEEEEEEccCcEEEEEECC
Confidence                    2221  389999999999998653334455543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.01  E-value=2.9e-05  Score=68.22  Aligned_cols=81  Identities=21%  Similarity=0.223  Sum_probs=58.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+|+|+. +.+...            +          ++.+.+.+.+       
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~~l~~------------~----------~~~~~~~l~~-------  234 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMM-DGLMQG------------A----------DRDLVKVWQK-------  234 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSS-SSSSTT------------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEEC-Cccccc------------c----------CHHHHHHHHH-------
Confidence            578999999999999999999999999999986 432211            1          2223332222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCC
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG  183 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~  183 (189)
                              .+..  .|++++++++|++++.++++..|.+.+
T Consensus       235 --------~l~~--~gV~i~~~~~v~~i~~~~~~~~v~~~~  265 (482)
T 1ojt_A          235 --------QNEY--RFDNIMVNTKTVAVEPKEDGVYVTFEG  265 (482)
T ss_dssp             --------HHGG--GEEEEECSCEEEEEEEETTEEEEEEES
T ss_pred             --------HHHh--cCCEEEECCEEEEEEEcCCeEEEEEec
Confidence                    1211  389999999999999877776666543

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.01  E-value=3.4e-06  Score=76.22  Aligned_cols=33  Identities=33%  Similarity=0.472  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      ..+||+|||||++||++|..|+++|++|+|||+
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~  138 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDY  138 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence            457899999999999999999999999999997

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.00  E-value=4.4e-06  Score=76.05  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=33.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg  101 (189)
                      ..||+|||+|++||++|+.|++.|  .+|+|+|+. ...+|
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~-~~~~~   44 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKV-YPMRS   44 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESS-CGGGS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCC-CCCCC
Confidence            468999999999999999999999  999999996 55443

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.00  E-value=4.8e-06  Score=73.48  Aligned_cols=31  Identities=29%  Similarity=0.479  Sum_probs=29.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ||+|||+|++||++|+.|++.|++|+|+|+.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            6999999999999999999999999999995

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.99  E-value=5.8e-05  Score=66.05  Aligned_cols=79  Identities=8%  Similarity=0.036  Sum_probs=56.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+|+|+. +.+..+.           +          ++.+.+.+.+       
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l~~~-----------~----------~~~~~~~l~~-------  228 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFL-GHVGGVG-----------I----------DMEISKNFQR-------  228 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSSCSS-----------C----------CHHHHHHHHH-------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEecc-CccCCcc-----------c----------CHHHHHHHHH-------
Confidence            478999999999999999999999999999986 4432210           1          1222222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe-EEEE
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM-WYLG  180 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~-w~l~  180 (189)
                              .+..  .|++++++++|++++.++++ +.|.
T Consensus       229 --------~l~~--~Gv~i~~~~~v~~i~~~~~~~~~v~  257 (474)
T 1zmd_A          229 --------ILQK--QGFKFKLNTKVTGATKKSDGKIDVS  257 (474)
T ss_dssp             --------HHHH--TTCEEECSEEEEEEEECTTSCEEEE
T ss_pred             --------HHHH--CCCEEEeCceEEEEEEcCCceEEEE
Confidence                    1211  38999999999999987665 7765

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.94  E-value=7e-06  Score=75.54  Aligned_cols=35  Identities=29%  Similarity=0.313  Sum_probs=32.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH-----cCCeEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDK-----RGVKSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~-----~g~~v~v~e~~~~~   98 (189)
                      ..+|+||||||+||++|..|++     .|++|+|||+. +.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~-~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR-ST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS-SS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCC-CC
Confidence            4689999999999999999999     99999999985 44

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.93  E-value=7.3e-05  Score=65.30  Aligned_cols=80  Identities=14%  Similarity=0.118  Sum_probs=57.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+|+++. +.+...            +          ++.+.+.+.+       
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------d~~~~~~l~~-------  223 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFA-PRCAPT------------L----------DEDVTNALVG-------  223 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSSTT------------S----------CHHHHHHHHH-------
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecC-Cccccc------------C----------CHHHHHHHHH-------
Confidence            478999999999999999999999999999986 432211            1          1223222222       


Q ss_pred             cCchHHHHHH-hccCCCcEEEeCceeEEEEEeCCeEEEEeC
Q 041557          143 LGYSKSQNLN-IFQTSKVNVVRTCWISNLEPFNGMWYLGEN  182 (189)
Q Consensus       143 ~~~~~~~~~l-~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~  182 (189)
                              .+ ..  .|++++++++|++++.+++++.+.+.
T Consensus       224 --------~l~~~--~gv~i~~~~~v~~i~~~~~~~~v~~~  254 (468)
T 2qae_A          224 --------ALAKN--EKMKFMTSTKVVGGTNNGDSVSLEVE  254 (468)
T ss_dssp             --------HHHHH--TCCEEECSCEEEEEEECSSSEEEEEE
T ss_pred             --------HHhhc--CCcEEEeCCEEEEEEEcCCeEEEEEE
Confidence                    22 11  38999999999999987766766653

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.93  E-value=1.1e-05  Score=70.55  Aligned_cols=38  Identities=29%  Similarity=0.456  Sum_probs=33.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      +||+|||||++|+.+|+.|+++|++|+|+|+. +..+..
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~-~~~~tp   39 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMR-PKRMTP   39 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCT-TTSCCS
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEecc-CCcCCc
Confidence            58999999999999999999999999999986 654433

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.92  E-value=9.1e-06  Score=74.59  Aligned_cols=33  Identities=33%  Similarity=0.531  Sum_probs=31.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+||+|||||++|+.+|+.|++.|.+|+|+|+.
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~   59 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLN   59 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEec
Confidence            579999999999999999999999999999986

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.92  E-value=7.8e-05  Score=65.77  Aligned_cols=84  Identities=10%  Similarity=0.048  Sum_probs=60.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+++++. +.+...            +          ++.+.+.+.+       
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------d~~~~~~l~~-------  231 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQ-DHVLPY------------E----------DADAALVLEE-------  231 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSS-SSSSCC------------S----------SHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC-Cccccc------------c----------CHHHHHHHHH-------
Confidence            478999999999999999999999999999986 432211            1          1223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA  186 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~  186 (189)
                              .+..  .|++++++++|++++.+++++.|.+.++..
T Consensus       232 --------~l~~--~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~  265 (499)
T 1xdi_A          232 --------SFAE--RGVRLFKNARAASVTRTGAGVLVTMTDGRT  265 (499)
T ss_dssp             --------HHHH--TTCEEETTCCEEEEEECSSSEEEEETTSCE
T ss_pred             --------HHHH--CCCEEEeCCEEEEEEEeCCEEEEEECCCcE
Confidence                    1111  389999999999999877677777666544

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.91  E-value=8.3e-05  Score=65.64  Aligned_cols=84  Identities=13%  Similarity=0.054  Sum_probs=59.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc---CCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR---GVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKV  139 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~---g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~  139 (189)
                      .++++|||+|..|+-+|..|++.   |.+|+|+++. +.+...            +          ++.+.+.+..    
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~-~~~l~~------------~----------d~~~~~~l~~----  239 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRG-DMILRG------------F----------DSELRKQLTE----  239 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESS-SSSSTT------------S----------CHHHHHHHHH----
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcC-CCcccc------------c----------CHHHHHHHHH----
Confidence            46899999999999999999999   9999999986 432211            1          1223222222    


Q ss_pred             hhhcCchHHHHHHhccCCCcEEEeCceeEEEEEeCC-eEEEEeCCeee
Q 041557          140 VLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNG-MWYLGENGKTA  186 (189)
Q Consensus       140 ~~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~-~w~l~~~~~~~  186 (189)
                                 .+..  .|++++++++|++++.+++ .+.|.+.+++.
T Consensus       240 -----------~l~~--~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~  274 (490)
T 1fec_A          240 -----------QLRA--NGINVRTHENPAKVTKNADGTRHVVFESGAE  274 (490)
T ss_dssp             -----------HHHH--TTEEEEETCCEEEEEECTTSCEEEEETTSCE
T ss_pred             -----------HHHh--CCCEEEeCCEEEEEEEcCCCEEEEEECCCcE
Confidence                       1111  3899999999999987654 47777766543

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.90  E-value=9e-05  Score=65.11  Aligned_cols=82  Identities=16%  Similarity=0.162  Sum_probs=57.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+|+++. +.+...            +          ++.+.+.+.+       
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------d~~~~~~l~~-------  234 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRG-ETVLRK------------F----------DECIQNTITD-------  234 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSS-SSSCTT------------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeC-Cccccc------------c----------CHHHHHHHHH-------
Confidence            468999999999999999999999999999986 432111            1          1223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe--EEEEeCCe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM--WYLGENGK  184 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~--w~l~~~~~  184 (189)
                              .+..  .|++++++++|++++..+++  ..|.+.++
T Consensus       235 --------~l~~--~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G  268 (479)
T 2hqm_A          235 --------HYVK--EGINVHKLSKIVKVEKNVETDKLKIHMNDS  268 (479)
T ss_dssp             --------HHHH--HTCEEECSCCEEEEEECC-CCCEEEEETTS
T ss_pred             --------HHHh--CCeEEEeCCEEEEEEEcCCCcEEEEEECCC
Confidence                    1111  28999999999999876544  67777665

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.90  E-value=9.8e-06  Score=74.69  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=31.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc------CCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR------GVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~------g~~v~v~e~~   95 (189)
                      ..||+|||+|++||++|+.|+++      |.+|+|+||.
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~   60 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA   60 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence            57999999999999999999998      9999999996

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.90  E-value=8e-06  Score=75.15  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=32.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+||+|||||++|+++|+.|++.|.+|+|+|+.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~   60 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHN   60 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeec
Confidence            3579999999999999999999999999999986

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.90  E-value=7.8e-05  Score=65.93  Aligned_cols=84  Identities=13%  Similarity=0.224  Sum_probs=59.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+|+++. +.+...            +          ++.+.+.+.+       
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------d~~~~~~l~~-------  225 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARG-NRILRK------------F----------DESVINVLEN-------  225 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSS-SSSCTT------------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecC-CccCcc------------c----------chhhHHHHHH-------
Confidence            568999999999999999999999999999986 432211            1          1223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCC-eEEEEeCCeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNG-MWYLGENGKTA  186 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~-~w~l~~~~~~~  186 (189)
                              .+..  .|++++++++|++++..++ .+.|.+.+++.
T Consensus       226 --------~l~~--~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~  260 (500)
T 1onf_A          226 --------DMKK--NNINIVTFADVVEIKKVSDKNLSIHLSDGRI  260 (500)
T ss_dssp             --------HHHH--TTCEEECSCCEEEEEESSTTCEEEEETTSCE
T ss_pred             --------HHHh--CCCEEEECCEEEEEEEcCCceEEEEECCCcE
Confidence                    1211  3899999999999987643 47777666543

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.90  E-value=5.2e-05  Score=65.26  Aligned_cols=87  Identities=18%  Similarity=0.215  Sum_probs=60.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhh
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVL  141 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~  141 (189)
                      ..++|+|||+|..|+-+|..|++.|.+|+++++. +.+..+.           +          ++.+.+.+.+      
T Consensus       142 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~-~~~l~~~-----------~----------~~~~~~~l~~------  193 (410)
T 3ef6_A          142 SATRLLIVGGGLIGCEVATTARKLGLSVTILEAG-DELLVRV-----------L----------GRRIGAWLRG------  193 (410)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSSHHH-----------H----------CHHHHHHHHH------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecC-Cccchhh-----------c----------CHHHHHHHHH------
Confidence            3578999999999999999999999999999986 4322110           0          1122222222      


Q ss_pred             hcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          142 LLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       142 ~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                               .+..  .|++++++++|++++.++..+.|.+.+++.+
T Consensus       194 ---------~l~~--~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i  228 (410)
T 3ef6_A          194 ---------LLTE--LGVQVELGTGVVGFSGEGQLEQVMASDGRSF  228 (410)
T ss_dssp             ---------HHHH--HTCEEECSCCEEEEECSSSCCEEEETTSCEE
T ss_pred             ---------HHHH--CCCEEEeCCEEEEEeccCcEEEEEECCCCEE
Confidence                     1111  2899999999999987665556777666544

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.89  E-value=1.1e-05  Score=73.91  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHH---H-cCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLD---K-RGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~---~-~g~~v~v~e~~   95 (189)
                      ...||+|||||++||++|+.|+   + +|.+|+|+||.
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~   58 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   58 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCc
Confidence            3579999999999999999999   6 89999999997

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.88  E-value=6.1e-05  Score=65.80  Aligned_cols=35  Identities=23%  Similarity=0.424  Sum_probs=32.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      .++|+|||+|++|+.+|..|++.|.+|+|+|+. +.
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~  205 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEAR-ER  205 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS-SS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcC-Cc
Confidence            468999999999999999999999999999986 44

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.88  E-value=0.00013  Score=63.53  Aligned_cols=83  Identities=18%  Similarity=0.065  Sum_probs=59.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+++++. +.+..+.           +          ++.+.+.+..       
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l~~~-----------~----------d~~~~~~l~~-------  197 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESL-ENLLPKY-----------F----------DKEMVAEVQK-------  197 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-SSSSTTT-----------C----------CHHHHHHHHH-------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-Ccccccc-----------C----------CHHHHHHHHH-------
Confidence            468999999999999999999999999999986 4322110           1          1223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK  184 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~  184 (189)
                              .+..  .|++++++++|++++..++++.|.++++
T Consensus       198 --------~l~~--~GV~i~~~~~v~~i~~~~~~v~v~~~~g  229 (452)
T 3oc4_A          198 --------SLEK--QAVIFHFEETVLGIEETANGIVLETSEQ  229 (452)
T ss_dssp             --------HHHT--TTEEEEETCCEEEEEECSSCEEEEESSC
T ss_pred             --------HHHH--cCCEEEeCCEEEEEEccCCeEEEEECCC
Confidence                    1211  3899999999999997777777776654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.88  E-value=0.00015  Score=62.34  Aligned_cols=35  Identities=26%  Similarity=0.459  Sum_probs=32.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+++++. +.
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~  179 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQ-PR  179 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-SS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeC-Cc
Confidence            578999999999999999999999999999986 44

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.87  E-value=0.00015  Score=64.42  Aligned_cols=82  Identities=10%  Similarity=0.021  Sum_probs=59.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhc
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLL  143 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~  143 (189)
                      ++++|||+|..|+-+|..|++.|.+|+++++. +.+...            +          ++.+.+.+..        
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~-~~~l~~------------~----------~~~~~~~l~~--------  263 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRT-EPLKLI------------K----------DNETRAYVLD--------  263 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-CTTTTC------------C----------SHHHHHHHHH--------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEec-Cccccc------------c----------cHHHHHHHHH--------
Confidence            78999999999999999999999999999986 432211            1          1122222222        


Q ss_pred             CchHHHHHHhccCCCcEEEeCceeEEEEEeCCe----EEEEeCCee
Q 041557          144 GYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM----WYLGENGKT  185 (189)
Q Consensus       144 ~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~----w~l~~~~~~  185 (189)
                             .+..  .|++++++++|++++..+++    +.|.+.+++
T Consensus       264 -------~l~~--~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~  300 (523)
T 1mo9_A          264 -------RMKE--QGMEIISGSNVTRIEEDANGRVQAVVAMTPNGE  300 (523)
T ss_dssp             -------HHHH--TTCEEESSCEEEEEEECTTSBEEEEEEEETTEE
T ss_pred             -------HHHh--CCcEEEECCEEEEEEEcCCCceEEEEEEECCCc
Confidence                   1211  38999999999999976555    788887775

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.86  E-value=0.00014  Score=62.38  Aligned_cols=86  Identities=17%  Similarity=0.174  Sum_probs=59.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+++++. +.+-.+.                     .++.+.+.+...      
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~-~~~l~~~---------------------~~~~~~~~l~~~------  203 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEAL-PRVLARV---------------------AGEALSEFYQAE------  203 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-SSTTTTT---------------------SCHHHHHHHHHH------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecC-Cchhhhh---------------------cCHHHHHHHHHH------
Confidence            568999999999999999999999999999986 4432210                     011222222221      


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe-EEEEeCCeeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM-WYLGENGKTAW  187 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~-w~l~~~~~~~~  187 (189)
                               +..  .|++++++++|+.++.+++. ..|.+.+++.+
T Consensus       204 ---------l~~--~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i  238 (415)
T 3lxd_A          204 ---------HRA--HGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVI  238 (415)
T ss_dssp             ---------HHH--TTCEEEETCCEEEEEESSSBEEEEEESSSCEE
T ss_pred             ---------HHh--CCCEEEECCEEEEEEecCCcEEEEEeCCCCEE
Confidence                     111  38999999999999886654 35666666544

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.85  E-value=0.0002  Score=61.35  Aligned_cols=86  Identities=13%  Similarity=0.173  Sum_probs=59.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|.+.|.+|+++++. +.+..+.           +          ++.+.+.+..       
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~-~~~~~~~-----------~----------~~~~~~~l~~-------  192 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELA-PRVMARV-----------V----------TPEISSYFHD-------  192 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSTTTTT-----------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC-Ccchhhc-----------c----------CHHHHHHHHH-------
Confidence            468999999999999999999999999999986 4432111           0          1122222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe-EEEEeCCeeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM-WYLGENGKTAW  187 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~-w~l~~~~~~~~  187 (189)
                              .+..  .|++++++++|++++.+++. ..|.+.+++.+
T Consensus       193 --------~l~~--~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i  228 (404)
T 3fg2_P          193 --------RHSG--AGIRMHYGVRATEIAAEGDRVTGVVLSDGNTL  228 (404)
T ss_dssp             --------HHHH--TTCEEECSCCEEEEEEETTEEEEEEETTSCEE
T ss_pred             --------HHHh--CCcEEEECCEEEEEEecCCcEEEEEeCCCCEE
Confidence                    1111  38999999999999887664 45777666544

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.85  E-value=1.7e-05  Score=68.32  Aligned_cols=37  Identities=19%  Similarity=0.323  Sum_probs=32.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCe--EEEEecCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVK--SNVFDMGNPDL   99 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~--v~v~e~~~~~~   99 (189)
                      ..++|+|||||++|+++|..|+++|++  |+|||+. +.+
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~-~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDE-AER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS-CSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECC-CCC
Confidence            357899999999999999999999985  9999996 543

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.85  E-value=1.1e-05  Score=74.05  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=34.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC-CCCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNP-DLEG  101 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~-~~gg  101 (189)
                      ..+||+|||||++|+++|+.|++.|.+|+|+|+. . .+|+
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~-~~~iG~   59 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSD-LSAVAR   59 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESC-GGGTTC
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEec-ccccCC
Confidence            4579999999999999999999999999999986 4 3444

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.84  E-value=1.1e-05  Score=72.07  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=32.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|++|||+|++|+.+|.+|++.|++|+|+|++
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g   39 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   39 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            4679999999999999999999999999999997

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.84  E-value=6.5e-05  Score=65.49  Aligned_cols=79  Identities=10%  Similarity=0.080  Sum_probs=56.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+|+++. +.+...            +          ++.+.+.+.+       
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~-~~~l~~------------~----------~~~~~~~l~~-------  226 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFA-SEIVPT------------M----------DAEIRKQFQR-------  226 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSS-SSSSTT------------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-Cccccc------------c----------cHHHHHHHHH-------
Confidence            478999999999999999999999999999986 433211            1          1223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                              .+..  .|++++++++|++++.+++++.|.+
T Consensus       227 --------~l~~--~gv~i~~~~~v~~i~~~~~~~~v~~  255 (470)
T 1dxl_A          227 --------SLEK--QGMKFKLKTKVVGVDTSGDGVKLTV  255 (470)
T ss_dssp             --------HHHH--SSCCEECSEEEEEEECSSSSEEEEE
T ss_pred             --------HHHH--cCCEEEeCCEEEEEEEcCCeEEEEE
Confidence                    1211  3899999999999987666666654

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.84  E-value=0.00013  Score=64.43  Aligned_cols=84  Identities=13%  Similarity=0.053  Sum_probs=59.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc---CCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR---GVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKV  139 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~---g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~  139 (189)
                      .++++|||+|..|+-+|..|++.   |.+|+|+++. +.+-..            +          ++.+.+.+.+    
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~-~~~l~~------------~----------d~~~~~~l~~----  243 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRN-NLILRG------------F----------DETIREEVTK----  243 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESS-SSSCTT------------S----------CHHHHHHHHH----
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcC-Cccccc------------c----------CHHHHHHHHH----
Confidence            46899999999999999999999   9999999986 432111            1          1223222222    


Q ss_pred             hhhcCchHHHHHHhccCCCcEEEeCceeEEEEEeCC-eEEEEeCCeee
Q 041557          140 VLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNG-MWYLGENGKTA  186 (189)
Q Consensus       140 ~~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~-~w~l~~~~~~~  186 (189)
                                 .+..  .|++++++++|++++.+++ .+.|.+.+++.
T Consensus       244 -----------~l~~--~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~  278 (495)
T 2wpf_A          244 -----------QLTA--NGIEIMTNENPAKVSLNTDGSKHVTFESGKT  278 (495)
T ss_dssp             -----------HHHH--TTCEEEESCCEEEEEECTTSCEEEEETTSCE
T ss_pred             -----------HHHh--CCCEEEeCCEEEEEEEcCCceEEEEECCCcE
Confidence                       1211  3899999999999987654 47777766543

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.84  E-value=0.00017  Score=62.59  Aligned_cols=86  Identities=15%  Similarity=0.140  Sum_probs=58.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+|+++. +.+..+.                     .++.+.+.+..       
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~-~~~l~~~---------------------~~~~~~~~l~~-------  199 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTA-ARVLERV---------------------TAPPVSAFYEH-------  199 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSTTTTT---------------------SCHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeC-Cccccch---------------------hhHHHHHHHHH-------
Confidence            578999999999999999999999999999986 4432210                     01122222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEE--eCCe-EEEEeCCeeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEP--FNGM-WYLGENGKTAW  187 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~--~~~~-w~l~~~~~~~~  187 (189)
                              .+..  .|++++++++|++++.  +++. +.|.+.++..+
T Consensus       200 --------~l~~--~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i  237 (431)
T 1q1r_A          200 --------LHRE--AGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRL  237 (431)
T ss_dssp             --------HHHH--HTCEEECSCCEEEEEECTTTCCEEEEEETTSCEE
T ss_pred             --------HHHh--CCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEE
Confidence                    1111  2899999999999987  4444 46766665443

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.83  E-value=1.5e-05  Score=67.88  Aligned_cols=33  Identities=21%  Similarity=0.172  Sum_probs=30.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~   95 (189)
                      .++|+|||||++|+++|..|+++|  .+|+|+|++
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~   38 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITAD   38 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSS
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECC
Confidence            478999999999999999999999  468999986

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.83  E-value=0.00015  Score=64.49  Aligned_cols=33  Identities=24%  Similarity=0.545  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~  183 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELA  183 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcC
Confidence            468999999999999999999999999999986

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.83  E-value=1.2e-05  Score=72.56  Aligned_cols=33  Identities=27%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++|++|||+|++|+.+|..+++.|.+|+|+|+.
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~   74 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYV   74 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            589999999999999999999999999999964

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.83  E-value=0.00018  Score=62.77  Aligned_cols=81  Identities=19%  Similarity=0.215  Sum_probs=59.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+++++. +.+..             +          ++.+.+.+.+       
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l~-------------~----------~~~~~~~l~~-------  224 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARN-TLFFR-------------E----------DPAIGEAVTA-------  224 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-CTTTT-------------S----------CHHHHHHHHH-------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEEC-CccCC-------------C----------CHHHHHHHHH-------
Confidence            468999999999999999999999999999986 33211             0          1122222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK  184 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~  184 (189)
                              .+..  .|++++++++|++++.+++.+.|.++++
T Consensus       225 --------~l~~--~Gv~i~~~~~v~~i~~~~~~~~v~~~~~  256 (467)
T 1zk7_A          225 --------AFRA--EGIEVLEHTQASQVAHMDGEFVLTTTHG  256 (467)
T ss_dssp             --------HHHH--TTCEEETTCCEEEEEEETTEEEEEETTE
T ss_pred             --------HHHh--CCCEEEcCCEEEEEEEeCCEEEEEECCc
Confidence                    1211  3899999999999998888888877653

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.83  E-value=0.00011  Score=66.13  Aligned_cols=83  Identities=16%  Similarity=0.108  Sum_probs=60.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||||..|+-.|..+++.|.+|+|+++. ..         +.    .+          ++++...+..       
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~-~~---------L~----~~----------D~ei~~~l~~-------  271 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRS-IV---------LR----GF----------DQQCAVKVKL-------  271 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESS-CS---------ST----TS----------CHHHHHHHHH-------
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEeccc-cc---------cc----cc----------chhHHHHHHH-------
Confidence            467999999999999999999999999999875 21         10    01          2223332222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA  186 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~  186 (189)
                              .|..  .|+++++++.|..++..++...|...++..
T Consensus       272 --------~l~~--~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~  305 (542)
T 4b1b_A          272 --------YMEE--QGVMFKNGILPKKLTKMDDKILVEFSDKTS  305 (542)
T ss_dssp             --------HHHH--TTCEEEETCCEEEEEEETTEEEEEETTSCE
T ss_pred             --------HHHh--hcceeecceEEEEEEecCCeEEEEEcCCCe
Confidence                    1111  389999999999999999988887766544

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.82  E-value=0.00013  Score=63.58  Aligned_cols=79  Identities=11%  Similarity=0.096  Sum_probs=56.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+|+++. +.+...            +          ++.+.+.+.+       
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------~~~~~~~l~~-------  220 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFL-PRALPN------------E----------DADVSKEIEK-------  220 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSSTT------------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcC-Cccccc------------c----------CHHHHHHHHH-------
Confidence            468999999999999999999999999999986 432111            1          1223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                              .+..  .|++++++++|++++.+++...+.+
T Consensus       221 --------~l~~--~gv~i~~~~~v~~i~~~~~~~~v~~  249 (464)
T 2a8x_A          221 --------QFKK--LGVTILTATKVESIADGGSQVTVTV  249 (464)
T ss_dssp             --------HHHH--HTCEEECSCEEEEEEECSSCEEEEE
T ss_pred             --------HHHH--cCCEEEeCcEEEEEEEcCCeEEEEE
Confidence                    1111  2899999999999987766666654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.82  E-value=0.00015  Score=63.32  Aligned_cols=86  Identities=19%  Similarity=0.175  Sum_probs=60.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVL  141 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~  141 (189)
                      .++++|||+|..|+-+|..|++. |.+|+++++. +.+..+.           +          ++.+.+.+..      
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~-~~~l~~~-----------~----------~~~~~~~l~~------  210 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELA-DQIMPGF-----------T----------SKSLSQMLRH------  210 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSS-SSSSTTT-----------S----------CHHHHHHHHH------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEcc-Ccccccc-----------c----------CHHHHHHHHH------
Confidence            56899999999999999999999 9999999986 4322110           1          1223222222      


Q ss_pred             hcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          142 LLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       142 ~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                               .+..  .|++++++++|++++.+++.+++.+.+++.+
T Consensus       211 ---------~l~~--~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i  245 (472)
T 3iwa_A          211 ---------DLEK--NDVVVHTGEKVVRLEGENGKVARVITDKRTL  245 (472)
T ss_dssp             ---------HHHH--TTCEEECSCCEEEEEESSSBEEEEEESSCEE
T ss_pred             ---------HHHh--cCCEEEeCCEEEEEEccCCeEEEEEeCCCEE
Confidence                     1111  3899999999999998777776766555443

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.81  E-value=1.1e-05  Score=71.36  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH-cCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDK-RGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~-~g~~v~v~e~~   95 (189)
                      +.+|++|||+|.+|+.+|.+|++ .|++|+|+|++
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG   50 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAG   50 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSS
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            47899999999999999999998 67999999997

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.80  E-value=1.6e-05  Score=70.44  Aligned_cols=38  Identities=32%  Similarity=0.532  Sum_probs=33.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDL   99 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~   99 (189)
                      +..++|+|||||++|+++|..|++.  |.+|+|||++ +.+
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~-~~~   48 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSED-PEL   48 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESS-SSC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCC-CCC
Confidence            3457899999999999999999887  8899999997 544

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.79  E-value=1.6e-05  Score=67.69  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=30.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ..+|+|||||++|+++|..|++.| +|+|+|++ +.
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~-~~   41 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKE-PV   41 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSS-SS
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECC-CC
Confidence            468999999999999999999999 99999986 43

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.79  E-value=0.00013  Score=64.11  Aligned_cols=81  Identities=15%  Similarity=0.166  Sum_probs=56.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|++|+.+|..|++.|.+|+|+++. +.+...            +          ++.+.+.+.+       
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------~~~~~~~l~~-------  235 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERN-DHIGTI------------Y----------DGDMAEYIYK-------  235 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCG-GGTTSS------------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeC-Cchhhc------------C----------CHHHHHHHHH-------
Confidence            578999999999999999999999999999986 433211            1          1222222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCC
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG  183 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~  183 (189)
                              .+..  .|++++++++|++++.+++.+.+.+++
T Consensus       236 --------~l~~--~Gv~i~~~~~v~~i~~~~~v~~v~~~~  266 (480)
T 3cgb_A          236 --------EADK--HHIEILTNENVKAFKGNERVEAVETDK  266 (480)
T ss_dssp             --------HHHH--TTCEEECSCCEEEEEESSBEEEEEETT
T ss_pred             --------HHHH--cCcEEEcCCEEEEEEcCCcEEEEEECC
Confidence                    1211  389999999999998754445565554

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.78  E-value=0.00016  Score=63.54  Aligned_cols=85  Identities=15%  Similarity=0.246  Sum_probs=61.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+++++. +.+...            +          ++.+.+.+..       
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~-~~~l~~------------~----------~~~~~~~l~~-------  240 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRG-DLILRN------------F----------DYDLRQLLND-------  240 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSSTT------------S----------CHHHHHHHHH-------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECC-Cccccc------------c----------CHHHHHHHHH-------
Confidence            568999999999999999999999999999986 432110            1          1122222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                              .+..  .|++++++++|++++.+++++.|.+.+++.+
T Consensus       241 --------~l~~--~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i  275 (484)
T 3o0h_A          241 --------AMVA--KGISIIYEATVSQVQSTENCYNVVLTNGQTI  275 (484)
T ss_dssp             --------HHHH--HTCEEESSCCEEEEEECSSSEEEEETTSCEE
T ss_pred             --------HHHH--CCCEEEeCCEEEEEEeeCCEEEEEECCCcEE
Confidence                    1111  2899999999999998888888888776443

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.77  E-value=1.7e-05  Score=68.80  Aligned_cols=34  Identities=21%  Similarity=0.399  Sum_probs=31.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHH---cCCeEEEEecCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDK---RGVKSNVFDMGNPD   98 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~---~g~~v~v~e~~~~~   98 (189)
                      ++|+|||||++|+++|..|++   .|++|+|||+. +.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~-~~   41 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISAN-DY   41 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSS-SE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCC-CC
Confidence            689999999999999999999   89999999986 54

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.77  E-value=0.00018  Score=63.47  Aligned_cols=78  Identities=13%  Similarity=0.042  Sum_probs=56.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+|+++. +.+...            +          ++.+.+.+..       
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------d~~~~~~l~~-------  223 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRS-GSVANL------------Q----------DEEMKRYAEK-------  223 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCT-TCCTTC------------C----------CHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEEC-Cccccc------------C----------CHHHHHHHHH-------
Confidence            578999999999999999999999999999986 443211            1          1123222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                              .+..   .++++++++|+.++..+++..+.+
T Consensus       224 --------~l~~---~V~i~~~~~v~~i~~~~~~v~v~~  251 (492)
T 3ic9_A          224 --------TFNE---EFYFDAKARVISTIEKEDAVEVIY  251 (492)
T ss_dssp             --------HHHT---TSEEETTCEEEEEEECSSSEEEEE
T ss_pred             --------HHhh---CcEEEECCEEEEEEEcCCEEEEEE
Confidence                    2222   389999999999998777776765

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.76  E-value=2.2e-05  Score=68.11  Aligned_cols=33  Identities=30%  Similarity=0.422  Sum_probs=29.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~   95 (189)
                      .++|+|||||++|+++|..|++.+  ++|+|+|+.
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~   36 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDR   36 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSS
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCC
Confidence            367999999999999999999876  789999986

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.73  E-value=9.2e-05  Score=61.77  Aligned_cols=92  Identities=13%  Similarity=0.165  Sum_probs=57.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhh
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVL  141 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~  141 (189)
                      +.++|+|||+|.+|+-+|..|++.|.+|+++++. +.+...    .       ++...    ...+.+.+.+.       
T Consensus       165 ~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~-~~~~~~----~-------~d~~~----~~~~~~~~~l~-------  221 (369)
T 3d1c_A          165 NKGQYVVIGGNESGFDAAYQLAKNGSDIALYTST-TGLNDP----D-------ADPSV----RLSPYTRQRLG-------  221 (369)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------------------CTT----SCCHHHHHHHH-------
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecC-CCCCCC----C-------CCCCc----cCCHHHHHHHH-------
Confidence            3568999999999999999999999999999986 332110    0       11100    00111212211       


Q ss_pred             hcCchHHHHHHhccCCC-cEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557          142 LLGYSKSQNLNIFQTSK-VNVVRTCWISNLEPFNGMWYLGENGKTA  186 (189)
Q Consensus       142 ~~~~~~~~~~l~~~~~~-v~v~~~t~V~~i~~~~~~w~l~~~~~~~  186 (189)
                              +.+..  .| ++++++++|+.++..++.+.|.+.+++.
T Consensus       222 --------~~l~~--~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~  257 (369)
T 3d1c_A          222 --------NVIKQ--GARIEMNVHYTVKDIDFNNGQYHISFDSGQS  257 (369)
T ss_dssp             --------HHHHT--TCCEEEECSCCEEEEEEETTEEEEEESSSCC
T ss_pred             --------HHHhh--CCcEEEecCcEEEEEEecCCceEEEecCCeE
Confidence                    12221  35 9999999999998777777777666543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.73  E-value=0.00032  Score=60.89  Aligned_cols=80  Identities=18%  Similarity=0.164  Sum_probs=55.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+|+++. +.+..+.           +          ++.+.+.+..       
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l~~~-----------~----------~~~~~~~l~~-------  199 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGH-ERVLYKY-----------F----------DKEFTDILAK-------  199 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESS-SSTTTTT-----------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcC-Cchhhhh-----------h----------hhhHHHHHHH-------
Confidence            467999999999999999999999999999986 4332110           1          1122222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEE-EEe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWY-LGE  181 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~-l~~  181 (189)
                              .+..  .|++++++++|++++..++... +.+
T Consensus       200 --------~l~~--~Gv~i~~~~~v~~i~~~~~~v~~v~~  229 (452)
T 2cdu_A          200 --------DYEA--HGVNLVLGSKVAAFEEVDDEIITKTL  229 (452)
T ss_dssp             --------HHHH--TTCEEEESSCEEEEEEETTEEEEEET
T ss_pred             --------HHHH--CCCEEEcCCeeEEEEcCCCeEEEEEe
Confidence                    1211  3899999999999987666554 444

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.73  E-value=0.00027  Score=61.73  Aligned_cols=80  Identities=11%  Similarity=0.088  Sum_probs=57.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+++++. +.+...            +          ++.+.+.+.+       
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------~~~~~~~l~~-------  229 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAM-DKFLPA------------V----------DEQVAKEAQK-------  229 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-SSSSTT------------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC-CCcCcc------------c----------CHHHHHHHHH-------
Confidence            468999999999999999999999999999986 432111            1          1223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeC
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGEN  182 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~  182 (189)
                              .+..  .|++++++++|++++.+++...+.+.
T Consensus       230 --------~l~~--~Gv~v~~~~~v~~i~~~~~~~~v~~~  259 (476)
T 3lad_A          230 --------ILTK--QGLKILLGARVTGTEVKNKQVTVKFV  259 (476)
T ss_dssp             --------HHHH--TTEEEEETCEEEEEEECSSCEEEEEE
T ss_pred             --------HHHh--CCCEEEECCEEEEEEEcCCEEEEEEE
Confidence                    1111  38999999999999987776666543

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.73  E-value=0.00023  Score=62.69  Aligned_cols=34  Identities=18%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|..|+-+|..|++.|.+|+|+++.
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~  226 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVV  226 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcc
Confidence            3578999999999999999999999999999986

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.68  E-value=0.00033  Score=61.53  Aligned_cols=80  Identities=11%  Similarity=0.111  Sum_probs=57.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+|+++. +.+...            +          ++.+.+.+.+       
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------d~~~~~~l~~-------  247 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFL-DTILGG------------M----------DGEVAKQLQR-------  247 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS-SSSSSS------------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecc-cccccc------------C----------CHHHHHHHHH-------
Confidence            468999999999999999999999999999986 432211            1          1223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeC
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGEN  182 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~  182 (189)
                              .+..  .|++++++++|+.++..++.+.+.+.
T Consensus       248 --------~l~~--~gV~v~~~~~v~~i~~~~~~~~v~~~  277 (491)
T 3urh_A          248 --------MLTK--QGIDFKLGAKVTGAVKSGDGAKVTFE  277 (491)
T ss_dssp             --------HHHH--TTCEEECSEEEEEEEEETTEEEEEEE
T ss_pred             --------HHHh--CCCEEEECCeEEEEEEeCCEEEEEEE
Confidence                    1111  38999999999999988887776553

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.66  E-value=3.2e-05  Score=68.77  Aligned_cols=34  Identities=18%  Similarity=0.411  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||||++|+.+|..|++.+++|+|+|+.
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~   74 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPR   74 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESS
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCC
Confidence            4568999999999999999999999999999985

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.59  E-value=0.00033  Score=61.05  Aligned_cols=83  Identities=16%  Similarity=0.150  Sum_probs=58.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+++++. +.+...            +          ++.+.+.+..       
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~-~~~l~~------------~----------~~~~~~~l~~-------  219 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRG-KEILSR------------F----------DQDMRRGLHA-------  219 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSSTT------------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC-Cccccc------------c----------CHHHHHHHHH-------
Confidence            568999999999999999999999999999986 432110            1          1223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe-EEEE-eCCee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM-WYLG-ENGKT  185 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~-w~l~-~~~~~  185 (189)
                              .+..  .|++++++++|++++.++++ +.|. +.+++
T Consensus       220 --------~l~~--~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~  254 (463)
T 4dna_A          220 --------AMEE--KGIRILCEDIIQSVSADADGRRVATTMKHGE  254 (463)
T ss_dssp             --------HHHH--TTCEEECSCCEEEEEECTTSCEEEEESSSCE
T ss_pred             --------HHHH--CCCEEECCCEEEEEEEcCCCEEEEEEcCCCe
Confidence                    1211  38999999999999987554 6777 66654

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.59  E-value=2.6e-05  Score=69.92  Aligned_cols=36  Identities=25%  Similarity=0.261  Sum_probs=32.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ..+|++|||+|.+|+.+|.+|++ |.+|+|+|++ ...
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG-~~~   60 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERG-SLP   60 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSS-BCG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecC-CCc
Confidence            45899999999999999999999 9999999998 554

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.56  E-value=9e-05  Score=68.17  Aligned_cols=46  Identities=20%  Similarity=0.191  Sum_probs=42.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI  108 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~  108 (189)
                      ..+|++|+|+|+.|...|..|++.|++|+++|+. +..||.+.+..+
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~-~~~gg~~~~~~l   52 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSR-SYYGGNWASFSF   52 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCGGGCEECH
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCC-CcccCccccccH
Confidence            4689999999999999999999999999999997 999999876544

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.56  E-value=0.00019  Score=62.16  Aligned_cols=34  Identities=21%  Similarity=0.394  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~   95 (189)
                      ..++|+|||+|.+|+-+|..|++.  |.+|+++++.
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~  261 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRA  261 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSS
T ss_pred             CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeC
Confidence            467899999999999999999999  8999999986

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.55  E-value=0.00064  Score=59.43  Aligned_cols=80  Identities=15%  Similarity=0.070  Sum_probs=56.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+++++. +.+...            +          ++.+.+.+.+       
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------d~~~~~~~~~-------  236 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRH-DKVLRS------------F----------DSMISTNCTE-------  236 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSCTT------------S----------CHHHHHHHHH-------
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeC-Cccccc------------c----------CHHHHHHHHH-------
Confidence            468999999999999999999999999999986 432110            1          1223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe--EEEEeC
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM--WYLGEN  182 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~--w~l~~~  182 (189)
                              .+..  .|++++++++|++++..+++  ..|.+.
T Consensus       237 --------~l~~--~gv~i~~~~~v~~i~~~~~~~~~~v~~~  268 (478)
T 3dk9_A          237 --------ELEN--AGVEVLKFSQVKEVKKTLSGLEVSMVTA  268 (478)
T ss_dssp             --------HHHH--TTCEEETTEEEEEEEECSSSEEEEEEEC
T ss_pred             --------HHHH--CCCEEEeCCEEEEEEEcCCCcEEEEEEc
Confidence                    1111  38999999999999876554  556554

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.53  E-value=0.00047  Score=60.90  Aligned_cols=86  Identities=14%  Similarity=0.110  Sum_probs=58.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH----cCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDK----RGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWK  138 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~----~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~  138 (189)
                      .++|+|||+|..|+-+|..|++    .|.+|+++++. +.+.++.           +          .+.+.+.+.    
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~-~~~~~~~-----------l----------~~~~~~~~~----  233 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPE-KGNMGKI-----------L----------PEYLSNWTM----  233 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSS-SSTTTTT-----------S----------CHHHHHHHH----
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecC-ccccccc-----------C----------CHHHHHHHH----
Confidence            5789999999999999999987    47889999875 4322111           0          011222111    


Q ss_pred             hhhhcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          139 VVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       139 ~~~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                                 +.+..  .||+++++++|+.++..++...|.+.+++.+
T Consensus       234 -----------~~l~~--~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i  269 (493)
T 1m6i_A          234 -----------EKVRR--EGVKVMPNAIVQSVGVSSGKLLIKLKDGRKV  269 (493)
T ss_dssp             -----------HHHHT--TTCEEECSCCEEEEEEETTEEEEEETTSCEE
T ss_pred             -----------HHHHh--cCCEEEeCCEEEEEEecCCeEEEEECCCCEE
Confidence                       11221  3899999999999988777777777666443

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.53  E-value=0.00046  Score=58.61  Aligned_cols=32  Identities=31%  Similarity=0.430  Sum_probs=30.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++++|||+|+.|+-+|..|++.|.+|+|+++.
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  175 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRG  175 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            67999999999999999999999999999986

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.48  E-value=7e-05  Score=67.93  Aligned_cols=36  Identities=31%  Similarity=0.339  Sum_probs=32.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMGNPD   98 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~~~~   98 (189)
                      ..+|++|||||.+|+.+|.+|++.+ ++|+|+|++ ..
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG-~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAG-IG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSS-CS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecC-CC
Confidence            3579999999999999999999998 799999998 54

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.47  E-value=9.8e-05  Score=65.50  Aligned_cols=35  Identities=31%  Similarity=0.491  Sum_probs=32.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      .+|++|||+|++|+.+|..|++.|++|+|+|++ ..
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~-~~   39 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG-QL   39 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CC
Confidence            468999999999999999999999999999997 53

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.44  E-value=0.0009  Score=60.04  Aligned_cols=76  Identities=20%  Similarity=0.254  Sum_probs=53.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+++++. +.+...            +          ++.+.+.+.+       
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------~~~~~~~l~~-------  236 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMA-NQVMPP------------I----------DYEMAAYVHE-------  236 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSCTT------------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecC-Cccccc------------C----------CHHHHHHHHH-------
Confidence            468999999999999999999999999999986 432111            1          1122222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEE
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWY  178 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~  178 (189)
                              .+..  .|++++++++|++++.++++..
T Consensus       237 --------~l~~--~GV~i~~~~~v~~i~~~~~~v~  262 (588)
T 3ics_A          237 --------HMKN--HDVELVFEDGVDALEENGAVVR  262 (588)
T ss_dssp             --------HHHH--TTCEEECSCCEEEEEGGGTEEE
T ss_pred             --------HHHH--cCCEEEECCeEEEEecCCCEEE
Confidence                    1111  3899999999999987655433

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.40  E-value=0.0011  Score=54.13  Aligned_cols=34  Identities=29%  Similarity=0.291  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus       172 ~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~  205 (338)
T 3itj_A          172 RNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRK  205 (338)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcC
Confidence            4578999999999999999999999999999986

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.39  E-value=0.0011  Score=57.47  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++++|||+|..|+-+|..|++.|.+|+|+|+.
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~  179 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRS  179 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeee
Confidence            457999999999999999999999999999986

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.38  E-value=0.00012  Score=64.96  Aligned_cols=34  Identities=29%  Similarity=0.560  Sum_probs=32.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|++|||+|++|+.+|..|++.|++|+|+|++
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~   43 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   43 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECC
Confidence            4679999999999999999999999999999987

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.36  E-value=0.002  Score=52.42  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus       144 ~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~  177 (320)
T 1trb_A          144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRR  177 (320)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeC
Confidence            3578999999999999999999999999999986

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.35  E-value=0.0014  Score=57.27  Aligned_cols=78  Identities=15%  Similarity=0.158  Sum_probs=55.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||+|..|+-+|..|++.|.+|+++++. +.+...            +         .++.+.+.+.+       
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~l~~------------~---------~d~~~~~~l~~-------  222 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEML-DRALIT------------L---------EDQDIVNTLLS-------  222 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSCTT------------S---------CCHHHHHHHHH-------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeC-CcCCCC------------C---------CCHHHHHHHHh-------
Confidence            478999999999999999999999999999986 432111            0         01223222222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeC-CeEEEEeC
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFN-GMWYLGEN  182 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~-~~w~l~~~  182 (189)
                              .   +  .++++++++|++++..+ ++..|.+.
T Consensus       223 --------~---l--~v~i~~~~~v~~i~~~~~~~v~v~~~  250 (466)
T 3l8k_A          223 --------I---L--KLNIKFNSPVTEVKKIKDDEYEVIYS  250 (466)
T ss_dssp             --------H---H--CCCEECSCCEEEEEEEETTEEEEEEC
T ss_pred             --------c---C--EEEEEECCEEEEEEEcCCCcEEEEEE
Confidence                    1   1  27999999999998876 77777665

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.32  E-value=0.00012  Score=66.47  Aligned_cols=35  Identities=29%  Similarity=0.445  Sum_probs=32.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMGNP   97 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~~~   97 (189)
                      ..+|++|||||.+|+.+|.+|++. +++|+|+|++ .
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG-~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESG-S   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSS-C
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecC-C
Confidence            468999999999999999999975 7999999998 5

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.31  E-value=0.0018  Score=53.08  Aligned_cols=33  Identities=24%  Similarity=0.352  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~  184 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRR  184 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcC
Confidence            578999999999999999999999999999986

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.29  E-value=0.0019  Score=53.79  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~  195 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRG  195 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcC
Confidence            578999999999999999999999999999986

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.26  E-value=0.0016  Score=57.09  Aligned_cols=33  Identities=21%  Similarity=0.326  Sum_probs=30.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~  217 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRS  217 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC
Confidence            457999999999999999999999999999975

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.25  E-value=0.0001  Score=66.68  Aligned_cols=33  Identities=27%  Similarity=0.342  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH-cCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDK-RGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~-~g~~v~v~e~~   95 (189)
                      .+|++|||||.+|+.+|.+|++ .+++|+|+|++
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG   35 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAG   35 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSS
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecC
Confidence            4689999999999999999998 68999999997

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.24  E-value=0.0022  Score=55.52  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  180 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRG  180 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcC
Confidence            3568999999999999999999999999999986

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.24  E-value=0.001  Score=58.20  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=30.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  219 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS  219 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            467999999999999999999999999999874

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.22  E-value=0.00024  Score=64.38  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH-cCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDK-RGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~-~g~~v~v~e~~   95 (189)
                      ..+|++|||+|++|+.+|..|++ .|++|+|+|++
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g   57 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKG   57 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecC
Confidence            45799999999999999999999 79999999987

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.21  E-value=0.00023  Score=63.85  Aligned_cols=34  Identities=29%  Similarity=0.428  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~   95 (189)
                      ..+|++|||+|++|+.+|..|++. |++|+|+|++
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g   46 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAG   46 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecC
Confidence            357999999999999999999998 8999999997

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.18  E-value=0.00072  Score=49.51  Aligned_cols=35  Identities=14%  Similarity=0.101  Sum_probs=32.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ....+|+|||.|..|..+|..|.+.|++|+++|++
T Consensus         5 ~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~   39 (140)
T 3fwz_A            5 DICNHALLVGYGRVGSLLGEKLLASDIPLVVIETS   39 (140)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence            34568999999999999999999999999999986

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.14  E-value=0.0045  Score=50.19  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=31.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~  175 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRR  175 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeC
Confidence            478999999999999999999999999999986

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.09  E-value=0.0031  Score=55.90  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=30.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++++|||+|..|+-+|..|++.|.+|+|+++.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            357999999999999999999999999999974

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.08  E-value=0.0046  Score=50.60  Aligned_cols=33  Identities=27%  Similarity=0.323  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~  184 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRR  184 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCC
Confidence            478999999999999999999999999999986

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.06  E-value=0.00057  Score=55.90  Aligned_cols=37  Identities=24%  Similarity=0.306  Sum_probs=33.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      .++|+|||||..|+-+|..|++.|.+|+|+++. +.+-
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~~~  181 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRR-DELR  181 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSS-SSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEecc-cccC
Confidence            468999999999999999999999999999986 5543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.01  E-value=0.0055  Score=49.99  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~  187 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYM  187 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcC
Confidence            478999999999999999999999999999986

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.99  E-value=0.009  Score=48.32  Aligned_cols=33  Identities=21%  Similarity=0.373  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~  176 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA  176 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeC
Confidence            578999999999999999999999999999986

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.99  E-value=0.0062  Score=54.70  Aligned_cols=33  Identities=24%  Similarity=0.270  Sum_probs=30.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||||..|+-+|..|++.|.+|+|+++.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            457999999999999999999999999999974

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.97  E-value=0.0055  Score=49.47  Aligned_cols=33  Identities=30%  Similarity=0.332  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|..|+-+|..|.+.|.+|+++++.
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~  186 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRR  186 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeC
Confidence            478999999999999999999999999999986

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.90  E-value=0.0044  Score=50.38  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~  186 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRR  186 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSS
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEec
Confidence            578999999999999999999999999999986

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.90  E-value=0.0011  Score=56.84  Aligned_cols=39  Identities=21%  Similarity=0.164  Sum_probs=34.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+|+|+. +.+..+
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~-~~~l~~  184 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIIL-EYPLER  184 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSS-SSSCTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcC-Cccchh
Confidence            367999999999999999999999999999997 665443

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.88  E-value=0.0015  Score=48.50  Aligned_cols=34  Identities=21%  Similarity=0.103  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|+|||+|..|+.+|..|.+.|++|+++|+.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~   51 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKN   51 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            4567999999999999999999999999999985

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=96.88  E-value=0.0092  Score=48.06  Aligned_cols=33  Identities=30%  Similarity=0.357  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++++|||+|..|+-+|..|.+.|.+|+++++.
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~  179 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRR  179 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSS
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeC
Confidence            478999999999999999999999999999986

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.82  E-value=0.0017  Score=47.17  Aligned_cols=33  Identities=21%  Similarity=0.166  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+++|+|+|..|..+|..|.+.|++|+++|+.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~   38 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            357999999999999999999999999999985

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.79  E-value=0.002  Score=47.57  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+++|+|+|..|...|..|.+.|++|+++|+.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            467999999999999999999999999999985

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=96.76  E-value=0.0014  Score=53.27  Aligned_cols=34  Identities=32%  Similarity=0.461  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++++|||+|..|+-+|..|++.|.+|+|+++.
T Consensus       151 ~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~  184 (314)
T 4a5l_A          151 RNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRR  184 (314)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHhCCeeeeeccc
Confidence            3578999999999999999999999999999985

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.75  E-value=0.0019  Score=46.17  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|+|||+|..|...|..|.+.|++|+++|+.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            46999999999999999999999999999985

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.72  E-value=0.0042  Score=55.09  Aligned_cols=32  Identities=19%  Similarity=0.258  Sum_probs=27.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRG--------------VKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g--------------~~v~v~e~~   95 (189)
                      .+++|||||+.|+-+|..|++.+              .+|+|+|..
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~  263 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEAL  263 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSS
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccc
Confidence            46999999999999999887543              579999986

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.69  E-value=0.005  Score=49.20  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=30.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|.+|+-+|..|++.| +|+++++.
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~  172 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNG  172 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTT
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECC
Confidence            578999999999999999999999 99999986

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.56  E-value=0.0024  Score=44.29  Aligned_cols=33  Identities=18%  Similarity=0.151  Sum_probs=30.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~   95 (189)
                      ..+|+|+|+|..|..++..|.+.| ++|+++++.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            357999999999999999999999 999999985

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.55  E-value=0.0032  Score=45.13  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|+|+|..|..+|..|.+.|++|+++|+.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357999999999999999999999999999974

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.43  E-value=0.004  Score=47.24  Aligned_cols=34  Identities=24%  Similarity=0.207  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~   95 (189)
                      ...+|+|||.|..|..+|..|.+. |++|+++|++
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~   72 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIR   72 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECC
Confidence            356899999999999999999999 9999999985

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.40  E-value=0.012  Score=54.08  Aligned_cols=37  Identities=14%  Similarity=0.119  Sum_probs=32.7

Q ss_pred             CCCCEEEEC--CCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           62 SNPHVKIIG--GGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        62 ~~~~v~IiG--~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ..++|+|||  +|..|+-+|..|++.|.+|+++++. +.+
T Consensus       522 ~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~-~~l  560 (690)
T 3k30_A          522 DGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPG-AQV  560 (690)
T ss_dssp             SSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESS-SST
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecc-ccc
Confidence            456799999  9999999999999999999999986 443

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.38  E-value=0.0028  Score=55.39  Aligned_cols=34  Identities=29%  Similarity=0.172  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|.|||.|.+|+++|..|+++|++|+++|..
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~   41 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGK   41 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4678999999999999999999999999999985

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.30  E-value=0.0036  Score=54.48  Aligned_cols=33  Identities=36%  Similarity=0.509  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|.|||.|.+|+++|..|+++|++|+++|..
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~   37 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTR   37 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECC
Confidence            468999999999999999999999999999985

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.26  E-value=0.0056  Score=50.03  Aligned_cols=33  Identities=18%  Similarity=0.344  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|.|||+|..|...|..|++.|++|+++|+.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~   36 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDIN   36 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            357999999999999999999999999999985

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.06  E-value=0.0061  Score=51.35  Aligned_cols=33  Identities=21%  Similarity=0.448  Sum_probs=30.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|+|||+|..|...|..++..|++|+++|..
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~   38 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIE   38 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECC
Confidence            457999999999999999999999999999964

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.06  E-value=0.0064  Score=49.99  Aligned_cols=32  Identities=28%  Similarity=0.371  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++|.|||+|..|...|..|++.|++|+++|+.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            56999999999999999999999999999975

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=95.97  E-value=0.0073  Score=49.41  Aligned_cols=34  Identities=29%  Similarity=0.374  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus       158 ~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~  191 (333)
T 1vdc_A          158 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR  191 (333)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCeEEEEecC
Confidence            3578999999999999999999999999999986

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=95.94  E-value=0.021  Score=54.58  Aligned_cols=33  Identities=12%  Similarity=0.106  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|..|+-+|..|++.|.+|+|+|+.
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~  316 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATGGVVAVIDAR  316 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGTCCSEEEESC
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECC
Confidence            478999999999999999999999999999986

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=95.91  E-value=0.0076  Score=53.92  Aligned_cols=36  Identities=22%  Similarity=0.233  Sum_probs=33.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ..++|+|||+|.+|+-+|..|++.|.+|+||++. +.
T Consensus       177 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~-~~  212 (540)
T 3gwf_A          177 AGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRT-PQ  212 (540)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESS-CC
T ss_pred             ccceEEEECCCchHHHHHHHHHhhCCEEEEEECC-CC
Confidence            4688999999999999999999999999999996 44

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=95.91  E-value=0.0084  Score=49.38  Aligned_cols=34  Identities=18%  Similarity=0.285  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus       154 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~  187 (335)
T 2a87_A          154 RDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRR  187 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcC
Confidence            3578999999999999999999999999999986

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.87  E-value=0.0078  Score=46.99  Aligned_cols=31  Identities=23%  Similarity=0.225  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+|||+|..|...|..|.+.|++|+++|++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~   32 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKD   32 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            5999999999999999999999999999975

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.80  E-value=0.0097  Score=49.45  Aligned_cols=33  Identities=18%  Similarity=0.242  Sum_probs=30.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+++|.|||+|.-|...|..|+ .|++|+++|+.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~   43 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVS   43 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSC
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECC
Confidence            4688999999999999999999 99999999985

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=95.78  E-value=0.01  Score=51.85  Aligned_cols=37  Identities=14%  Similarity=0.094  Sum_probs=33.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ..++|+|||+|.+|+-+|..|++.|.+|+++++. +.+
T Consensus       196 ~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~-~~~  232 (464)
T 2xve_A          196 KDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYR-TAP  232 (464)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECS-SCC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEEC-CCC
Confidence            4578999999999999999999999999999986 544

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.76  E-value=0.011  Score=47.50  Aligned_cols=31  Identities=16%  Similarity=0.122  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||+|..|...|..|++.|++|+++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   32 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRV   32 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcC
Confidence            5899999999999999999999999999986

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=95.76  E-value=0.0091  Score=53.51  Aligned_cols=36  Identities=17%  Similarity=0.276  Sum_probs=33.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ..++|+|||+|.+|+-+|..|++.+.+|+||++. +.
T Consensus       190 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~-~~  225 (549)
T 4ap3_A          190 TGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS-AN  225 (549)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS-CC
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhCCEEEEEECC-CC
Confidence            4688999999999999999999999999999996 44

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=95.75  E-value=0.011  Score=51.11  Aligned_cols=36  Identities=14%  Similarity=0.100  Sum_probs=32.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMGNPD   98 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~~~~   98 (189)
                      ..++|+|||+|.+|+-+|..|++.|.+ |+|+++. +.
T Consensus       211 ~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~-~~  247 (447)
T 2gv8_A          211 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG-GG  247 (447)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT-CC
T ss_pred             CCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCC-CC
Confidence            467899999999999999999999999 9999986 43

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.74  E-value=0.0087  Score=53.59  Aligned_cols=36  Identities=19%  Similarity=0.273  Sum_probs=33.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ..++|+|||+|.+|+-+|..|++.+.+|+||++. +.
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~-~~  219 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAETAKELYVFQRT-PN  219 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESS-CC
T ss_pred             CCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcC-CC
Confidence            4688999999999999999999999999999997 54

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.72  E-value=0.0084  Score=49.45  Aligned_cols=34  Identities=24%  Similarity=0.365  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+++|+|||+|-.|+..+..|.+.|.+|+|++..
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5688999999999999999999999999999864

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.72  E-value=0.013  Score=46.86  Aligned_cols=35  Identities=17%  Similarity=0.191  Sum_probs=32.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...++|+|||||..|...+..|.+.|.+|+|++..
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            35788999999999999999999999999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.72  E-value=0.029  Score=53.87  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..+|+|||||..|+-+|..|.+.|. +|+|+++.
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~  365 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK  365 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEec
Confidence            4589999999999999999999996 89999985

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.67  E-value=0.015  Score=51.29  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .-.+|.|||+|.-|...|..|++.|++|+++|..
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~   86 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRN   86 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECc
Confidence            3467999999999999999999999999999986

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.63  E-value=0.012  Score=51.76  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+++|||.|..|+.+|..|+++|++|++||++
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~   40 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKD   40 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467999999999999999999999999999986

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.63  E-value=0.012  Score=48.87  Aligned_cols=32  Identities=22%  Similarity=0.185  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|+|||+|..|...|..|++.|++|+++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            46999999999999999999999999999986

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.62  E-value=0.015  Score=48.66  Aligned_cols=32  Identities=28%  Similarity=0.325  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|+|||+|..|...|..|++.|++|+++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            47999999999999999999999999999974

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.60  E-value=0.015  Score=50.52  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|+|||+|.+|+.+|..|...|.+|+++|+.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~  222 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVR  222 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4578999999999999999999999999999986

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.57  E-value=0.017  Score=45.17  Aligned_cols=35  Identities=14%  Similarity=0.194  Sum_probs=31.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ..+|.|||+|..|.+.|..|++.|++|+++++. +.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~-~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSK-DQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTT-CC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC-HH
Confidence            356999999999999999999999999999986 44

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.52  E-value=0.014  Score=47.51  Aligned_cols=31  Identities=19%  Similarity=0.267  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||+|..|...|..|++.|++|+++++.
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   35 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW   35 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            6999999999999999999999999999985

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.51  E-value=0.017  Score=46.11  Aligned_cols=34  Identities=15%  Similarity=0.141  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|.|||.|..|.+.|..|++.|++|+++++.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~   51 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRD   51 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4578999999999999999999999999999986

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.48  E-value=0.013  Score=51.80  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .-+|.|||.|..|+..|..|++.|++|+++|+.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~   40 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVD   40 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECC
Confidence            346999999999999999999999999999974

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.47  E-value=0.017  Score=50.77  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|.|||+|..|...|..|++.|++|+++|+.
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~   69 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESD   69 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECC
Confidence            3457999999999999999999999999999975

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.44  E-value=0.007  Score=44.21  Aligned_cols=33  Identities=18%  Similarity=0.193  Sum_probs=30.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|..|...|..|.+.|++|+++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~   53 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRN   53 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            568999999999999999999999999999975

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=95.42  E-value=0.027  Score=47.16  Aligned_cols=41  Identities=20%  Similarity=0.276  Sum_probs=34.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ++|+|+|||..|..+++.+.+.|++|+++|.+...+.-.+.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~~~~~~a   42 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQALIRNYA   42 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTTS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCChhHhhC
Confidence            57999999999999999999999999999986334444443

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.39  E-value=0.013  Score=48.41  Aligned_cols=32  Identities=19%  Similarity=0.243  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|+|||+|..|.+.|..|++.|++|+++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcC
Confidence            46999999999999999999999999999986

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.39  E-value=0.016  Score=49.91  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|+|||+|..|+.+|..|...|.+|+++|+.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~  216 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVR  216 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4578999999999999999999999999999985

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.37  E-value=0.016  Score=48.45  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=30.0

Q ss_pred             CCCEEEECCCHHHHH-HHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLA-CALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~-~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|.|||.|.+|++ +|..|.++|++|+++|+.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~   37 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAK   37 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            357999999999996 899999999999999985

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.35  E-value=0.023  Score=47.72  Aligned_cols=32  Identities=22%  Similarity=0.271  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+|+|||+|-.|.++|..|+..|+ +|+++|..
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~   42 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   42 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            479999999999999999999998 99999986

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.30  E-value=0.016  Score=50.77  Aligned_cols=32  Identities=19%  Similarity=0.294  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||.|..|+.+|..|+++|++|+++|+.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~   34 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTD   34 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECC
Confidence            36999999999999999999999999999975

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.29  E-value=0.023  Score=47.23  Aligned_cols=32  Identities=22%  Similarity=0.345  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+|+|||+|..|...|..|++.|+ +|+++|..
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~   37 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA   37 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            579999999999999999999998 99999986

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.28  E-value=0.024  Score=46.86  Aligned_cols=33  Identities=27%  Similarity=0.326  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|.|||.|..|...|..|++.|++|+++|+.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~   53 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRT   53 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            357999999999999999999999999999986

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.27  E-value=0.016  Score=51.32  Aligned_cols=34  Identities=21%  Similarity=0.363  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus       354 ~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~  387 (521)
T 1hyu_A          354 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA  387 (521)
T ss_dssp             BTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeC
Confidence            3578999999999999999999999999999986

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=95.26  E-value=0.022  Score=49.84  Aligned_cols=35  Identities=20%  Similarity=0.450  Sum_probs=31.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...++|+|||+|..|+-+|..|.+.|. +|+++++.
T Consensus       262 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~  297 (456)
T 2vdc_G          262 AAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRR  297 (456)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeC
Confidence            356889999999999999999999997 59999985

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.24  E-value=0.021  Score=47.49  Aligned_cols=32  Identities=22%  Similarity=0.240  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||+|..|...|..|++.|++|+++++.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            47999999999999999999999999999974

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.22  E-value=0.022  Score=46.81  Aligned_cols=32  Identities=25%  Similarity=0.253  Sum_probs=30.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||.|..|...|..|++.|++|+++++.
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~   39 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLN   39 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            57999999999999999999999999999985

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.19  E-value=0.02  Score=47.16  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      .+|+|||+|..|...|..|++.|+  +|+++|+.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            469999999999999999999999  99999975

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.19  E-value=0.017  Score=47.39  Aligned_cols=35  Identities=20%  Similarity=0.195  Sum_probs=32.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      ..+|.|||.|..|...|..|++.|++|+++|+. +.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~-~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIR-IE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSS-TT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCC-HH
Confidence            457999999999999999999999999999986 44

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.18  E-value=0.023  Score=46.16  Aligned_cols=32  Identities=25%  Similarity=0.306  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||.|..|...|..|++.|++|+++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~   33 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRS   33 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCC
Confidence            36999999999999999999999999999986

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.16  E-value=0.023  Score=47.31  Aligned_cols=34  Identities=15%  Similarity=0.133  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|.|||+|..|...|..|++.|++|+++++.
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            3567999999999999999999999999999874

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.13  E-value=0.024  Score=48.99  Aligned_cols=34  Identities=29%  Similarity=0.374  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|+|||+|.+|+.+|..|...|.+|+++|+.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~  204 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTR  204 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3578999999999999999999999999999975

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.13  E-value=0.018  Score=47.15  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|+|||+|..|.+.|..|++.|++|+++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEec
Confidence            46999999999999999999999999999985

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.10  E-value=0.027  Score=48.16  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|+|||+|.+|+.++..|...|.+|+++|+.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~  204 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVR  204 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4678999999999999999999999999999985

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.08  E-value=0.029  Score=47.06  Aligned_cols=32  Identities=28%  Similarity=0.428  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+|+|||+|..|..+|..|+..|+ +|+++|..
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~   47 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDII   47 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            479999999999999999999999 99999986

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=95.08  E-value=0.057  Score=45.79  Aligned_cols=44  Identities=27%  Similarity=0.295  Sum_probs=35.6

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ..+.++|+|||+|..|..++..+.+.|++|+++|.....+...+
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~   54 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQV   54 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHh
Confidence            34567899999999999999999999999999997522334333

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.02  E-value=0.028  Score=47.71  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=30.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|.|||+|.-|.+.|..|++.|++|+++++.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~   61 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYE   61 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            357999999999999999999999999999985

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=95.00  E-value=0.029  Score=47.51  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|+|+|+|.+|+.++..|...|.+|+++++.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~  199 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN  199 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            478999999999999999999999999999975

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.99  E-value=0.02  Score=46.55  Aligned_cols=31  Identities=19%  Similarity=0.248  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|...|..|++.|++|+++++.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~   33 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRN   33 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSS
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            6999999999999999999999999999986

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.98  E-value=0.033  Score=43.54  Aligned_cols=33  Identities=33%  Similarity=0.330  Sum_probs=30.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|.|||+|..|...|..|.+.|++|+++++.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~   60 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRN   60 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            457999999999999999999999999999985

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=94.98  E-value=0.022  Score=46.94  Aligned_cols=30  Identities=23%  Similarity=0.345  Sum_probs=28.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      +|.|||+|..|...|..|++.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            589999999999999999999999999998

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=94.97  E-value=0.031  Score=45.42  Aligned_cols=34  Identities=18%  Similarity=0.160  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++++|+|+|-.|.++|..|++.|.+|+|+++.
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            4578999999999999999999999999999874

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.94  E-value=0.027  Score=49.88  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=30.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|.|||+|..|...|..|++.|++|+++|++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~   37 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDIS   37 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECC
Confidence            357999999999999999999999999999975

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.94  E-value=0.026  Score=45.49  Aligned_cols=33  Identities=27%  Similarity=0.346  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..+|+|||+|-.|..+|..|++.|. +++|+|.+
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            4679999999999999999999997 79999975

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.92  E-value=0.026  Score=50.00  Aligned_cols=34  Identities=15%  Similarity=0.226  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHc-CC-eEEEEecCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKR-GV-KSNVFDMGNPD   98 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~-g~-~v~v~e~~~~~   98 (189)
                      .+|.|||.|..|+.+|..|+++ |+ +|+++|+. +.
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~-~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRN-SK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCC-CT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC-hh
Confidence            4699999999999999999999 99 99999987 44

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=94.91  E-value=0.17  Score=46.16  Aligned_cols=30  Identities=27%  Similarity=0.325  Sum_probs=26.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEE
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNV   91 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v   91 (189)
                      ..++|+|||+|..|+-+|..|++.|.+|++
T Consensus       493 ~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv  522 (671)
T 1ps9_A          493 VGNKVAIIGCGGIGFDTAMYLSQPGESTSQ  522 (671)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred             CCCeEEEECCChhHHHHHHHHHhcCCCccc
Confidence            457899999999999999999999977654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.90  E-value=0.032  Score=48.36  Aligned_cols=33  Identities=30%  Similarity=0.158  Sum_probs=30.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|+|||.|..|...|..|.+.|++|+++|++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d   36 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHD   36 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            357999999999999999999999999999975

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.84  E-value=0.039  Score=46.21  Aligned_cols=32  Identities=19%  Similarity=0.335  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+|+|||+|-.|..+|..|+..|+ +|.++|..
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~   37 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV   37 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            479999999999999999999998 99999975

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=94.82  E-value=0.044  Score=45.20  Aligned_cols=33  Identities=24%  Similarity=0.270  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|.|||.|..|...|..|.+.|++|+++++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~   41 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRS   41 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            457999999999999999999999999999986

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.81  E-value=0.022  Score=49.47  Aligned_cols=31  Identities=29%  Similarity=0.374  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|+..|..|++.|++|+++|+.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999999999999999999999974

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=94.80  E-value=0.036  Score=47.09  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|+|+|+|..|+.+|..|...|.+|+++|+.
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~  198 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVN  198 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            3578999999999999999999999999999975

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=94.80  E-value=0.03  Score=46.35  Aligned_cols=31  Identities=26%  Similarity=0.363  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +|+|||+|..|...|..|+..|+  .|.++|..
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~   34 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRD   34 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            59999999999999999999999  99999875

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.78  E-value=0.03  Score=46.53  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|.|||.|..|...|..|++.|++|+++++.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~   63 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRT   63 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCC
Confidence            457999999999999999999999999999985

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.73  E-value=0.04  Score=46.11  Aligned_cols=34  Identities=21%  Similarity=0.378  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...+|+|||+|..|..+|+.|+..|+ .|+++|..
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            34679999999999999999999999 99999974

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=94.71  E-value=0.039  Score=47.12  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|..|+.+|..|...|.+|+++|+.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~  200 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDIN  200 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4678999999999999999999999999999974

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.67  E-value=0.033  Score=46.24  Aligned_cols=32  Identities=19%  Similarity=0.179  Sum_probs=28.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|+|||+|..|...|..|++.|++|+++ +.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            457999999999999999999999999999 53

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.62  E-value=0.055  Score=44.40  Aligned_cols=33  Identities=21%  Similarity=0.152  Sum_probs=30.6

Q ss_pred             CCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|.||| .|..|.+.|..|.+.|++|+++++.
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~   54 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRE   54 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTT
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            35799999 9999999999999999999999986

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=94.61  E-value=0.031  Score=45.51  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=29.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|.+|+-+|..|++.| +|+++.+.
T Consensus       162 ~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~  194 (357)
T 4a9w_A          162 AGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQH  194 (357)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSS
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECC
Confidence            4578999999999999999999998 69999875

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=94.57  E-value=0.048  Score=44.75  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=31.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++++|||+|-+|.+++..|.+.|.+|+|+.|.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt  150 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRS  150 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            678999999999999999999999999999886

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.54  E-value=0.041  Score=46.81  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|.|||.|..|...|..|++.|++|+++++.
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~   54 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLN   54 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4567999999999999999999999999999985

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=94.53  E-value=0.056  Score=46.33  Aligned_cols=47  Identities=15%  Similarity=0.271  Sum_probs=36.6

Q ss_pred             cCCCCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           57 TAPISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        57 ~~~~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ..++++.++|.|+|+|..|..++..+.+.|++|.++| ....+..++.
T Consensus        18 ~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~a   64 (403)
T 3k5i_A           18 QGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQIS   64 (403)
T ss_dssp             ---CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGC
T ss_pred             eccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhc
Confidence            3345567889999999999999999999999999999 5245555544

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.52  E-value=0.031  Score=49.09  Aligned_cols=33  Identities=15%  Similarity=0.253  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|+|||.|..||..|..|+++|++|+.||-+
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did   53 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVN   53 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECC
Confidence            457999999999999999999999999999964

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.47  E-value=0.022  Score=47.91  Aligned_cols=31  Identities=26%  Similarity=0.325  Sum_probs=29.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||+|..|...|..|++.|++|+++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            6999999999999999999999999999874

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=94.46  E-value=0.046  Score=50.73  Aligned_cols=33  Identities=24%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      -.+|.|||+|..|...|..|++.|++|+++|+.
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~  344 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVN  344 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECC
Confidence            357999999999999999999999999999975

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=94.45  E-value=0.035  Score=45.16  Aligned_cols=34  Identities=26%  Similarity=0.248  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++++|+|+|-+|.++|..|++.|.+|+|+++.
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~  151 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT  151 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4578999999999999999999999999999885

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=94.44  E-value=0.044  Score=42.16  Aligned_cols=31  Identities=29%  Similarity=0.238  Sum_probs=29.1

Q ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+||| +|..|...|..|.+.|++|+++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            589999 9999999999999999999999985

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=94.43  E-value=0.045  Score=45.22  Aligned_cols=34  Identities=12%  Similarity=0.187  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++++|||+|.+|..+|..|.+.|. +|+|+++.
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            45789999999999999999999998 89999875

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=94.41  E-value=0.054  Score=42.16  Aligned_cols=34  Identities=15%  Similarity=0.193  Sum_probs=31.0

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|.|| |..|..++..|.++|++|+++.+.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~   54 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRN   54 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Confidence            5678999998 999999999999999999999985

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.38  E-value=0.045  Score=45.20  Aligned_cols=31  Identities=32%  Similarity=0.383  Sum_probs=28.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|+|||+|..|...|..|+ .|++|+++++.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~   33 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRR   33 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECC
Confidence            46999999999999999999 99999999985

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.35  E-value=0.021  Score=50.15  Aligned_cols=31  Identities=19%  Similarity=0.184  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+|+|+|-.|...|..|...|++|+|+|++
T Consensus         5 ~iiI~G~G~vG~~la~~L~~~~~~v~vId~d   35 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVGENNDITIVDKD   35 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCSTTEEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            5999999999999999999999999999985

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.32  E-value=0.037  Score=48.42  Aligned_cols=31  Identities=16%  Similarity=0.239  Sum_probs=28.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||.|..|+..|..|++ |++|+++|+.
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~   67 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIV   67 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecC
Confidence            469999999999999999998 9999999975

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.32  E-value=0.063  Score=42.98  Aligned_cols=32  Identities=25%  Similarity=0.250  Sum_probs=30.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|+|.|+|..|..++..|.++|++|+++.+.
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~   35 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRS   35 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECT
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57999999999999999999999999999986

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=94.32  E-value=0.043  Score=48.13  Aligned_cols=34  Identities=24%  Similarity=0.251  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+++|+|||+|.+|...+..|.+.|.+|+|++..
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            4678999999999999999999999999999974

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=94.30  E-value=0.056  Score=44.42  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|.|||.|..|..+|..|...|.+|+++++.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~  189 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARS  189 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECC
Confidence            5678999999999999999999999999999985

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.29  E-value=0.034  Score=47.84  Aligned_cols=30  Identities=17%  Similarity=0.284  Sum_probs=28.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|+..|..|++ |++|+++|+.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~   31 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDIL   31 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECC
Confidence            58999999999999999999 9999999974

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.27  E-value=0.041  Score=45.76  Aligned_cols=32  Identities=25%  Similarity=0.331  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~   95 (189)
                      .+|.|||.|..|...|..|++.| ++|+++++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~   57 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLR   57 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            57999999999999999999999 999999986

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.27  E-value=0.065  Score=43.98  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|.|||+|..|...|..|.+.|++|+++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~   62 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRT   62 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCC
Confidence            357999999999999999999999999999985

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.26  E-value=0.051  Score=45.06  Aligned_cols=31  Identities=23%  Similarity=0.399  Sum_probs=28.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHc--CCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKR--GVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~   95 (189)
                      +|+|||+|..|...|..|++.  |++|+++|..
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~   34 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            589999999999999999985  7899999986

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=94.25  E-value=0.06  Score=44.13  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|.|||.|..|..+|..|...|.+|+++++.
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~  187 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARE  187 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECC
Confidence            5678999999999999999999999999999985

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=94.24  E-value=0.046  Score=43.53  Aligned_cols=31  Identities=32%  Similarity=0.433  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRG-VKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~   95 (189)
                      +|.|||+|..|...|..|.+.| ++|+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCC
Confidence            5899999999999999999999 999999985

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=94.23  E-value=0.05  Score=43.75  Aligned_cols=31  Identities=19%  Similarity=0.171  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||+|..|...|..|.+.|++|+++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999999999999999999999875

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=94.17  E-value=0.05  Score=47.53  Aligned_cols=34  Identities=24%  Similarity=0.160  Sum_probs=30.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHH--------------------HcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLD--------------------KRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~--------------------~~g~-~v~v~e~~   95 (189)
                      ..++|+|||+|..|+-+|..|+                    +.|. +|+|+++.
T Consensus       144 ~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~  198 (460)
T 1cjc_A          144 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRR  198 (460)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcC
Confidence            4678999999999999999999                    5687 69999985

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=94.17  E-value=0.047  Score=48.19  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|.|||.|..|...|..|+++|++|+++++.
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~   47 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRS   47 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            3567999999999999999999999999999985

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=94.16  E-value=0.1  Score=44.14  Aligned_cols=43  Identities=26%  Similarity=0.189  Sum_probs=35.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+.++|.|||+|..|..++..+.+.|++|+++|.....+..++
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~   52 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYV   52 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhh
Confidence            3467899999999999999999999999999997623344443

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=94.16  E-value=0.056  Score=43.55  Aligned_cols=31  Identities=29%  Similarity=0.382  Sum_probs=29.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +|.|||+|..|...|..|.+.|+  +|+++|+.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   35 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            59999999999999999999998  89999975

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.16  E-value=0.062  Score=44.70  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      ..+|.|||.|..|.+.|..|.+.|+  +|+++|+.
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~   67 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   67 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            3579999999999999999999999  99999985

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.15  E-value=0.065  Score=45.02  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..+|+|||+|..|.++|+.|+..|+ .+.++|..
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~   40 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIA   40 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            4579999999999999999999999 99999986

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=94.14  E-value=0.051  Score=50.37  Aligned_cols=34  Identities=15%  Similarity=0.228  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|.|||+|..|...|..|++.|++|+++|+.
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~  346 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDIN  346 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECC
Confidence            4567999999999999999999999999999975

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.12  E-value=0.037  Score=45.14  Aligned_cols=30  Identities=17%  Similarity=0.138  Sum_probs=28.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHc-----C-CeEEEEec
Q 041557           65 HVKIIGGGMAVLACALRLDKR-----G-VKSNVFDM   94 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~-----g-~~v~v~e~   94 (189)
                      +|.|||+|..|...|..|++.     | ++|+++++
T Consensus        10 ~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A           10 KIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            699999999999999999999     9 99999986

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.10  E-value=0.047  Score=45.16  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=30.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..+|.|||.|..|...|..|++.|+ +|+++++.
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            3579999999999999999999999 99999984

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.10  E-value=0.055  Score=46.83  Aligned_cols=35  Identities=29%  Similarity=0.302  Sum_probs=31.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ....+|+|+|+|.+|+.+|..|...|. +|+++|+.
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            345789999999999999999999999 89999985

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=94.07  E-value=0.048  Score=45.37  Aligned_cols=31  Identities=23%  Similarity=0.332  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +|+|||+|..|.+.|..|++.|+  +|+++|..
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~   34 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            58999999999999999999999  99999975

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=94.07  E-value=0.038  Score=45.66  Aligned_cols=33  Identities=18%  Similarity=0.145  Sum_probs=28.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|.+||-|..|..+|..|.++|++|++||+.
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~   37 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRT   37 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEC---
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            357999999999999999999999999999986

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=94.01  E-value=0.062  Score=45.45  Aligned_cols=32  Identities=16%  Similarity=0.053  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||.|..|.+.|..|.+.|++|+++|+.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~   40 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRS   40 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCC
Confidence            56999999999999999999999999999985

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=93.99  E-value=0.045  Score=46.28  Aligned_cols=33  Identities=12%  Similarity=0.109  Sum_probs=30.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC-------CeEEEEecCCCC
Q 041557           65 HVKIIGGGMAVLACALRLDKRG-------VKSNVFDMGNPD   98 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g-------~~v~v~e~~~~~   98 (189)
                      +|.|||+|..|.+.|..|++.|       ++|+++++. +.
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~-~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRD-EF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCS-CC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECC-hh
Confidence            6999999999999999999999       999999986 44

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=93.98  E-value=0.049  Score=50.34  Aligned_cols=34  Identities=15%  Similarity=0.085  Sum_probs=31.6

Q ss_pred             CCCCEEEEC--CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIG--GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG--~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||  +|..|+-+|..|++.|.+|+|+++.
T Consensus       527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~  562 (729)
T 1o94_A          527 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGV  562 (729)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEecc
Confidence            457899999  9999999999999999999999986

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=93.97  E-value=0.068  Score=47.44  Aligned_cols=34  Identities=12%  Similarity=0.145  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|.|||.|..|..+|..|+++|++|+++++.
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~   42 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRT   42 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4568999999999999999999999999999985

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.94  E-value=0.062  Score=46.38  Aligned_cols=35  Identities=23%  Similarity=0.084  Sum_probs=31.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ....+|+|+|+|-+|..+|..|...|. +|+++|+.
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            356789999999999999999999998 79999984

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=93.94  E-value=0.036  Score=43.47  Aligned_cols=32  Identities=25%  Similarity=0.257  Sum_probs=29.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEE-EecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNV-FDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v-~e~~   95 (189)
                      .+|.|||+|..|...|..|.+.|++|++ +++.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~   56 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRG   56 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            4799999999999999999999999999 8875

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=93.94  E-value=0.08  Score=44.35  Aligned_cols=33  Identities=15%  Similarity=0.202  Sum_probs=30.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..+|+|||+|..|.++|+.|+..|+ .+.++|..
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~   38 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIA   38 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            4579999999999999999999998 99999975

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=93.94  E-value=0.093  Score=39.40  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=29.8

Q ss_pred             CCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++|+|+|| |..|..++..|.++|++|+++.+.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~   36 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD   36 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeC
Confidence            57999998 999999999999999999999875

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=93.89  E-value=0.071  Score=44.22  Aligned_cols=32  Identities=22%  Similarity=0.329  Sum_probs=29.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+|+|||+|..|...|..|+..|+ +|.++|..
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~   35 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIV   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            469999999999999999999997 99999975

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=93.87  E-value=0.058  Score=43.81  Aligned_cols=32  Identities=31%  Similarity=0.359  Sum_probs=29.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||.|..|...|..|.+.|++|+++++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   36 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLM   36 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            46999999999999999999999999999975

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.85  E-value=0.064  Score=43.51  Aligned_cols=32  Identities=13%  Similarity=0.235  Sum_probs=29.9

Q ss_pred             CCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||+ |..|...|..|.+.|++|+++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~   44 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIA   44 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            46999999 999999999999999999999975

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=93.83  E-value=0.057  Score=44.58  Aligned_cols=31  Identities=29%  Similarity=0.234  Sum_probs=29.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRG--VKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~   95 (189)
                      +|+|||+|-.|...|..|++.|  .+|+++|+.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~   35 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            6999999999999999999999  789999975

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=93.81  E-value=0.076  Score=42.19  Aligned_cols=34  Identities=12%  Similarity=0.033  Sum_probs=30.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcC----CeEEEEecCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRG----VKSNVFDMGNPD   98 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g----~~v~v~e~~~~~   98 (189)
                      .+|.|||+|..|...|..|.+.|    ++|+++++. +.
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~-~~   42 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPS-KK   42 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSS-CC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCC-cc
Confidence            36999999999999999999999    799999986 44

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.79  E-value=0.028  Score=44.15  Aligned_cols=32  Identities=25%  Similarity=0.248  Sum_probs=29.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+++|+|+|..|...|..|.+.|+ |+++|++
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~   40 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDE   40 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECC
Confidence            4579999999999999999999999 9999985

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=93.79  E-value=0.058  Score=43.70  Aligned_cols=31  Identities=29%  Similarity=0.216  Sum_probs=29.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|...|..|.+.|++|+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~   32 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVF   32 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSS
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5999999999999999999999999999985

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=93.78  E-value=0.053  Score=43.97  Aligned_cols=31  Identities=29%  Similarity=0.214  Sum_probs=29.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|...|..|.+.|++|.++++.
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   37 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   37 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             eEEEECchHHHHHHHHHHHhCCCEEEEEeCC
Confidence            6999999999999999999999999999975

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=93.77  E-value=0.064  Score=43.59  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=30.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|..|.+.|..|.+.|.+|+++++.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~  161 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRT  161 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECC
Confidence            467999999999999999999999999999875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=93.72  E-value=0.079  Score=44.55  Aligned_cols=33  Identities=27%  Similarity=0.424  Sum_probs=29.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      ..+|+|||+|..|.++|+.|+..|+  .++++|..
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            4579999999999999999999997  89999974

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=93.70  E-value=0.062  Score=44.17  Aligned_cols=34  Identities=24%  Similarity=0.127  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++++|||+|-+|.++|..|.+.|. +|+|+.|.
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~  150 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRT  150 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            46789999999999999999999998 89999875

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=93.70  E-value=0.075  Score=47.21  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=32.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+.++|+|+|..|..+|..|+..|.+|+++|..
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~  297 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEID  297 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            35788999999999999999999999999999874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.65  E-value=0.078  Score=42.28  Aligned_cols=32  Identities=13%  Similarity=0.048  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|+|+|+|..|..++..|.++|++|+++.+.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~   37 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRN   37 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESC
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcC
Confidence            57999999999999999999999999999985

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=93.64  E-value=0.045  Score=46.65  Aligned_cols=29  Identities=24%  Similarity=0.315  Sum_probs=27.4

Q ss_pred             CEEEECCCHHHHHHHHHHHH-cCCeEEEEe
Q 041557           65 HVKIIGGGMAVLACALRLDK-RGVKSNVFD   93 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~-~g~~v~v~e   93 (189)
                      +|+|||+|..|...|..|++ .|++|++++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            59999999999999999998 499999999

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=93.62  E-value=0.086  Score=49.14  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .-++|.|||+|..|...|..++..|++|+++|..
T Consensus       315 ~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~  348 (742)
T 3zwc_A          315 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESD  348 (742)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             cccEEEEEcccHHHHHHHHHHHhCCCchhcccch
Confidence            4578999999999999999999999999999964

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=93.61  E-value=0.097  Score=41.52  Aligned_cols=32  Identities=16%  Similarity=0.197  Sum_probs=29.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC----eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV----KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~----~v~v~e~~   95 (189)
                      .+|.|||.|..|...|..|.+.|+    +|.++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~   38 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLN   38 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Confidence            469999999999999999999998    99999985

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=93.60  E-value=0.042  Score=45.78  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=30.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcC-------CeEEEEecCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRG-------VKSNVFDMGNPD   98 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g-------~~v~v~e~~~~~   98 (189)
                      .+|.|||+|..|.+.|..|++.|       ++|+++++. +.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~-~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFE-ED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCC-CB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcC-hh
Confidence            36999999999999999999999       899999986 44

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=93.59  E-value=0.071  Score=47.30  Aligned_cols=34  Identities=24%  Similarity=0.355  Sum_probs=31.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus       185 ~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~  218 (542)
T 1w4x_A          185 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT  218 (542)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCEEEEECCCccHHHHHHHHhhcCceEEEEEcC
Confidence            4688999999999999999999999999999986

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=93.55  E-value=0.092  Score=46.78  Aligned_cols=35  Identities=29%  Similarity=0.221  Sum_probs=32.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      .+++|||+|..|...|..|.+.|++|+++|++ +..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d-~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQ-ESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-hHH
Confidence            78999999999999999999999999999987 543

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.54  E-value=0.05  Score=47.99  Aligned_cols=32  Identities=19%  Similarity=0.293  Sum_probs=29.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHc--CCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKR--GVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~   95 (189)
                      .+|.|||.|..|+..|..|+++  |++|+++|+.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            4699999999999999999999  7999999974

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=93.52  E-value=0.088  Score=44.98  Aligned_cols=35  Identities=26%  Similarity=0.259  Sum_probs=32.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...++|+|+|.|-.|..+|..|.+.|.+|+++|..
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            45688999999999999999999999999999864

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=93.52  E-value=0.094  Score=43.12  Aligned_cols=34  Identities=32%  Similarity=0.292  Sum_probs=30.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++++|+|+|-+|.+++..|++.|. +|+|+.+.
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~  160 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence            46789999999999999999999998 69999875

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=93.52  E-value=0.095  Score=43.89  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++++|+|+|-+|.++|..|++.|. +|+|+.|.
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            46789999999999999999999998 89999875

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=93.51  E-value=0.082  Score=44.61  Aligned_cols=34  Identities=15%  Similarity=0.230  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +..+|+|||+|..|..+|+.|+..|+  .+.++|..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~   55 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVM   55 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            45689999999999999999999998  89999964

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=93.50  E-value=0.09  Score=43.84  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=29.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      .+|+|||+|-.|.++|+.|+..++  .+.++|..
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~   41 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   41 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            579999999999999999999998  89999975

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=93.47  E-value=0.12  Score=44.67  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=32.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+.++|.|+|+|..|..++..+.+.|++|.++|..
T Consensus        33 ~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~   67 (419)
T 4e4t_A           33 LPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPD   67 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            45678999999999999999999999999999875

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=93.44  E-value=0.097  Score=39.82  Aligned_cols=31  Identities=23%  Similarity=0.231  Sum_probs=28.8

Q ss_pred             CEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+|+|| |..|..++..|.++|++|+++.+.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~   33 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRN   33 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcC
Confidence            4899996 999999999999999999999985

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=93.44  E-value=0.065  Score=46.83  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=30.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+..|||.|..|+.+|..|+++|++|++||.+
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~   43 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDIN   43 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECC
Confidence            456899999999999999999999999999975

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=93.43  E-value=0.067  Score=42.64  Aligned_cols=30  Identities=33%  Similarity=0.272  Sum_probs=28.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      +|.|||.|..|...|..|.+.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            589999999999999999999999999876

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=93.43  E-value=0.093  Score=46.51  Aligned_cols=32  Identities=16%  Similarity=0.266  Sum_probs=30.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||.|..|..+|..|+++|++|+++++.
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~   36 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRT   36 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46999999999999999999999999999986

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=93.41  E-value=0.068  Score=42.97  Aligned_cols=30  Identities=23%  Similarity=0.230  Sum_probs=28.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||+|..|...|..|.+ |++|+++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~   32 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRT   32 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSS
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCC
Confidence            59999999999999999999 9999999985

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=93.39  E-value=0.099  Score=42.95  Aligned_cols=34  Identities=18%  Similarity=0.136  Sum_probs=30.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++++|+|+|-+|.+++..|++.|. +|+|+.+.
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~  159 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRT  159 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC
Confidence            46789999999999999999999996 89999875

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=93.38  E-value=0.11  Score=42.33  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC---eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV---KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~---~v~v~e~~   95 (189)
                      ..+|.|||+|..|.+.|..|.+.|+   +|+++|+.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~   38 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRS   38 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCC
Confidence            3579999999999999999999999   89999986

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=93.38  E-value=0.11  Score=43.57  Aligned_cols=33  Identities=33%  Similarity=0.242  Sum_probs=30.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|.|||.|..|.+.|..|.+.|++|+++++.
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~   48 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRS   48 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCT
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECC
Confidence            346999999999999999999999999999985

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=93.35  E-value=0.075  Score=43.40  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=30.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++++|+|+|-.|.++|..|++.| +|+|+++.
T Consensus       127 ~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          127 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            4578999999999999999999999 99999874

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=93.33  E-value=0.1  Score=42.64  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++++|+|+|-+|.++|..|++.|. +|+|+.|.
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~  153 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD  153 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46789999999999999999999996 89999874

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=93.32  E-value=0.088  Score=46.37  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=29.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|...|..|+++|++|+++++.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5999999999999999999999999999975

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=93.29  E-value=0.11  Score=42.15  Aligned_cols=34  Identities=12%  Similarity=0.125  Sum_probs=31.1

Q ss_pred             CCCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++++|+| +|-.|.++|..|++.|.+|+++++.
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~  152 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK  152 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            457899999 9999999999999999999999875

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=93.28  E-value=0.11  Score=39.84  Aligned_cols=31  Identities=19%  Similarity=0.241  Sum_probs=28.9

Q ss_pred             CEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+|+|| |..|..++..|.++|++|+++.+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~   33 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRD   33 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            4899998 999999999999999999999875

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=93.27  E-value=0.081  Score=43.79  Aligned_cols=31  Identities=13%  Similarity=0.122  Sum_probs=28.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +|+|||+|..|.++|+.|+..|+  ++.++|..
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~   34 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            58999999999999999999998  89999975

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=93.23  E-value=0.094  Score=41.86  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=29.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVK-SNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~   95 (189)
                      .+|.|||+|..|...|..|.+.|++ |.++++.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~   43 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRT   43 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3699999999999999999999999 8999875

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=93.22  E-value=0.079  Score=46.42  Aligned_cols=32  Identities=16%  Similarity=0.225  Sum_probs=29.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHc--CCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKR--GVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~   95 (189)
                      .+|.|||.|..|+..|..|++.  |++|+++|+.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~   39 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVN   39 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            3699999999999999999999  8999999974

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=93.21  E-value=0.094  Score=46.18  Aligned_cols=31  Identities=16%  Similarity=0.272  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|...|..|+++|++|+++++.
T Consensus         4 ~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~   34 (482)
T 2pgd_A            4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRT   34 (482)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             eEEEEChHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            6999999999999999999999999999985

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=93.20  E-value=0.1  Score=46.45  Aligned_cols=35  Identities=23%  Similarity=0.331  Sum_probs=32.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...++|+|||.|..|..+|..|...|.+|+++|..
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~  306 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEID  306 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45788999999999999999999999999999975

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=93.18  E-value=0.13  Score=41.65  Aligned_cols=33  Identities=27%  Similarity=0.275  Sum_probs=30.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .. +++|||+|-+|.+++..|.+.|. +|+|++|.
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~  141 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT  141 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            35 89999999999999999999998 89999875

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=93.14  E-value=0.1  Score=44.92  Aligned_cols=34  Identities=26%  Similarity=0.269  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++|+|||+|..|..+|..|...|. +|+++++.
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~  200 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT  200 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            46789999999999999999999998 89999875

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=93.07  E-value=0.13  Score=41.34  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=30.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .. +++|||+|-.|...|..|.+.|.+|+++++.
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~  148 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGLEVWVWNRT  148 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            35 8999999999999999999999999999875

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=93.07  E-value=0.11  Score=43.77  Aligned_cols=35  Identities=17%  Similarity=0.395  Sum_probs=30.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      ....+|+|||+|..|.++|+.|+.+|+  .+.++|..
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            345689999999999999999999997  79999964

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=93.07  E-value=0.099  Score=43.08  Aligned_cols=34  Identities=21%  Similarity=0.129  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++++|+|+|-+|.++++.|.+.|. +|+|+.|.
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt  155 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRN  155 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESC
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46789999999999999999999998 89999875

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=93.05  E-value=0.14  Score=41.27  Aligned_cols=35  Identities=26%  Similarity=0.327  Sum_probs=31.1

Q ss_pred             CEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           65 HVKIIGG-GMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        65 ~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      +|+|.|| |..|..++..|.++|++|+++.|. +..+
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~-~~~~   37 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRK-PGPG   37 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-CCTT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC-CCcC
Confidence            4899998 999999999999999999999886 5543

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=93.04  E-value=0.031  Score=44.95  Aligned_cols=31  Identities=26%  Similarity=0.312  Sum_probs=29.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      .+|.|||.|..|.+.|..|.++|++|+++++
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~   37 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHA   37 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECSS
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEecC
Confidence            4699999999999999999999999999987

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=93.02  E-value=0.11  Score=43.80  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=29.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      ..+|+|||+|..|.++|+.|+..|+  .+.++|..
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            4579999999999999999999998  79999964

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=92.99  E-value=0.099  Score=43.39  Aligned_cols=32  Identities=25%  Similarity=0.714  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      .+|+|||+|..|...|+.|+.+|+  .+.++|..
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~   48 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLS   48 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            579999999999999999999998  89999986

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=92.97  E-value=0.13  Score=42.94  Aligned_cols=34  Identities=18%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++++|+|+|-+|.+++..|++.|. +|+|+.|.
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            46789999999999999999999998 79999875

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=92.92  E-value=0.14  Score=42.89  Aligned_cols=34  Identities=21%  Similarity=0.119  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|.|||.|..|...|..|+..|++|+++++.
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~  182 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRT  182 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCC
Confidence            4678999999999999999999999999999986

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=92.92  E-value=0.12  Score=45.34  Aligned_cols=32  Identities=16%  Similarity=0.334  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||.|..|...|..|+++|++|+++++.
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~   37 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRT   37 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            57999999999999999999999999999975

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=92.92  E-value=0.072  Score=47.05  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=30.4

Q ss_pred             CCCCEEEECCCHHHHH-HHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLA-CALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~-~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|.|||-|-+|++ +|..|.++|++|++.|..
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~   55 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLA   55 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECC
Confidence            3578999999999997 799999999999999975

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=92.90  E-value=0.13  Score=42.34  Aligned_cols=33  Identities=15%  Similarity=0.038  Sum_probs=30.3

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|+|+|| |..|...+..|.+.|++|.++.+.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~   43 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARP   43 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECC
Confidence            467999998 999999999999999999999986

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=92.86  E-value=0.12  Score=45.13  Aligned_cols=35  Identities=20%  Similarity=0.239  Sum_probs=32.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+.|+|||.|..|..+|..|...|.+|+++|..
T Consensus       218 L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~d  252 (435)
T 3gvp_A          218 FGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEID  252 (435)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             ecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35788999999999999999999999999999975

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=92.82  E-value=0.11  Score=41.90  Aligned_cols=34  Identities=32%  Similarity=0.247  Sum_probs=30.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...+|+|||+|-.|..+|..|++.|. +++|+|.+
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35689999999999999999999997 68999864

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=92.81  E-value=0.13  Score=44.51  Aligned_cols=39  Identities=28%  Similarity=0.348  Sum_probs=33.7

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCC---eEEEEecCCC-CCCcC
Q 041557           63 NPHVKIIGG-GMAVLACALRLDKRGV---KSNVFDMGNP-DLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~-G~~Gl~~A~~l~~~g~---~v~v~e~~~~-~~gg~  102 (189)
                      ..+|+|||+ |.+|+.++..+...|.   .|+++|.. . ..|++
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~-~~~~g~~  257 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIK-ETSRGGP  257 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHH-HHTTCSC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecc-ccccCCc
Confidence            568999999 9999999999999998   89999985 4 44554

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=92.81  E-value=0.11  Score=43.09  Aligned_cols=32  Identities=25%  Similarity=0.198  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcC----CeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRG----VKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g----~~v~v~e~~   95 (189)
                      .+|.|||+|..|...|..|.+.|    ++|+++++.
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~   58 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPD   58 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence            46999999999999999999999    899999986

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=92.75  E-value=0.11  Score=43.16  Aligned_cols=34  Identities=29%  Similarity=0.297  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...+|+|||+|-.|..+|..|++.|. +++|+|.+
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D   69 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD   69 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45689999999999999999999997 69999975

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=92.71  E-value=0.16  Score=41.67  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=29.7

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|.|| |..|..++..|.++|++|+++++.
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   52 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLR   52 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCC
Confidence            4578999998 999999999999999999999986

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=92.69  E-value=0.11  Score=41.35  Aligned_cols=32  Identities=19%  Similarity=0.099  Sum_probs=29.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.|||.|..|...|..|.+.|+.|.++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~   35 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSS   35 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCC
Confidence            36999999999999999999999999999985

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=92.62  E-value=0.14  Score=43.40  Aligned_cols=34  Identities=29%  Similarity=0.336  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...+|+|||+|-.|..+|..|++.|. +++|+|.+
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            46789999999999999999999997 68899874

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=92.62  E-value=0.13  Score=43.53  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=29.4

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           63 NPHVKIIGG-GMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~-G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      ..+|+|||+ |..|.++|+.|..+|.  .+.++|..
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            467999997 9999999999999995  79999964

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=92.58  E-value=0.13  Score=43.01  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=28.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +|+|||+|..|.++|+.|+..|+  .+.++|..
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   34 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIK   34 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCc
Confidence            58999999999999999999997  89999986

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=92.56  E-value=0.12  Score=44.94  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=29.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHc--------------------CC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKR--------------------GV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~--------------------g~-~v~v~e~~   95 (189)
                      ..++|+|||+|..|+-+|..|++.                    |. +|+|+++.
T Consensus       146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~  200 (456)
T 1lqt_A          146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR  200 (456)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecC
Confidence            467899999999999999999874                    54 89999985

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=92.52  E-value=0.12  Score=43.56  Aligned_cols=35  Identities=14%  Similarity=0.102  Sum_probs=30.7

Q ss_pred             CCCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...++++|||+| +.|..+|..|...|.+|+|+++.
T Consensus       175 l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          175 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            356889999999 67999999999999999998764

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=92.52  E-value=0.15  Score=41.04  Aligned_cols=33  Identities=27%  Similarity=0.239  Sum_probs=30.7

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|.|| |..|..++..|.++|++|+++++.
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   40 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDL   40 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence            467999999 999999999999999999999985

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=92.49  E-value=0.11  Score=42.85  Aligned_cols=32  Identities=34%  Similarity=0.352  Sum_probs=30.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++|.+||-|.-|..+|..|.+.|++|++|++.
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~   35 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   35 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCC
Confidence            46999999999999999999999999999985

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=92.39  E-value=0.15  Score=42.30  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=29.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      ..+|+|||+|..|.+.|+.|+..|.  .+.++|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            3579999999999999999998885  79999974

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=92.34  E-value=0.16  Score=41.22  Aligned_cols=33  Identities=21%  Similarity=0.040  Sum_probs=30.3

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|.|| |..|..++..|.++|++|+++++.
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~   36 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRR   36 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            457999998 999999999999999999999985

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=92.34  E-value=0.15  Score=41.69  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=30.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .++++|||+|-+|.++++.|.+.|. +|+|+.|.
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4689999999999999999999997 79999874

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=92.31  E-value=0.22  Score=40.34  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=30.8

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|.|| |..|..++..|.++|++|+++++.
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   44 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4568999998 999999999999999999999874

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=92.30  E-value=0.16  Score=42.45  Aligned_cols=34  Identities=32%  Similarity=0.310  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|.|||.|..|...|..|...|++|+++++.
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~  187 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGR  187 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC
Confidence            4678999999999999999999999999999975

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=92.29  E-value=0.15  Score=42.42  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=29.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      ..+|+|||+|-.|.++|+.|+..|+  .+.++|..
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            3579999999999999999999985  79999864

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=92.21  E-value=0.085  Score=42.58  Aligned_cols=30  Identities=23%  Similarity=0.269  Sum_probs=28.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|...|..|.+.|++|++++ .
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~   34 (295)
T 1yb4_A            5 KLGFIGLGIMGSPMAINLARAGHQLHVTT-I   34 (295)
T ss_dssp             EEEECCCSTTHHHHHHHHHHTTCEEEECC-S
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCEEEEEc-C
Confidence            69999999999999999999999999998 6

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=92.17  E-value=0.15  Score=39.20  Aligned_cols=32  Identities=19%  Similarity=0.181  Sum_probs=29.6

Q ss_pred             CCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++|+|.|| |..|..++..|.++|++|+++.+.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~   37 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRH   37 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence            57999995 999999999999999999999985

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=92.15  E-value=0.19  Score=42.18  Aligned_cols=35  Identities=31%  Similarity=0.197  Sum_probs=32.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...++|.|||.|-.|...|..|...|++|+++++.
T Consensus       144 l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~  178 (333)
T 2d0i_A          144 LYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRH  178 (333)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSS
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            35678999999999999999999999999999986

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=92.14  E-value=0.2  Score=42.07  Aligned_cols=34  Identities=32%  Similarity=0.278  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|.|||.|-.|...|..|...|++|+++++.
T Consensus       163 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~  196 (333)
T 3ba1_A          163 SGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRS  196 (333)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            5678999999999999999999999999999986

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=92.13  E-value=0.16  Score=43.00  Aligned_cols=33  Identities=24%  Similarity=0.293  Sum_probs=30.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..+|+|||+|-.|..+|..|++.|. +++|+|.+
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D  151 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDND  151 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            5689999999999999999999997 69999874

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=92.08  E-value=0.2  Score=38.91  Aligned_cols=32  Identities=22%  Similarity=0.133  Sum_probs=29.1

Q ss_pred             CCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +.|+|.|| |-.|..+|..|+++|++|+++++.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~   34 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRG   34 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence            35899987 999999999999999999999985

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=92.05  E-value=0.23  Score=40.64  Aligned_cols=34  Identities=24%  Similarity=0.124  Sum_probs=30.9

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+|+|.|| |..|..++..|.++|++|+++++.
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~   53 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNF   53 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4567999998 999999999999999999999984

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=91.99  E-value=0.19  Score=44.04  Aligned_cols=34  Identities=21%  Similarity=0.243  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||.|..|..+|..|...|.+|+++|..
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~  243 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGFGARVVVTEVD  243 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCC
Confidence            5788999999999999999999999999999975

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=91.98  E-value=0.19  Score=40.84  Aligned_cols=36  Identities=17%  Similarity=0.002  Sum_probs=30.0

Q ss_pred             CCCCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           60 ISSNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        60 ~~~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +.+..+|+|.|| |..|..++..|.++|++|+++++.
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   47 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVAR   47 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence            445678999997 999999999999999999999985

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=91.96  E-value=0.25  Score=37.83  Aligned_cols=32  Identities=13%  Similarity=0.204  Sum_probs=29.1

Q ss_pred             CCEEEECC-CHHHHHHHHHHH-HcCCeEEEEecC
Q 041557           64 PHVKIIGG-GMAVLACALRLD-KRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~-G~~Gl~~A~~l~-~~g~~v~v~e~~   95 (189)
                      +.|+|+|| |-.|..++..|+ +.|++|+++.+.
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~   39 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQ   39 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecC
Confidence            45999995 999999999999 899999999886

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=91.94  E-value=0.18  Score=40.04  Aligned_cols=34  Identities=18%  Similarity=0.052  Sum_probs=30.3

Q ss_pred             CCCCEEEECC-C-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-G-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.++|.|| | -.|..+|..|+++|++|+++++.
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~   56 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYH   56 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCC
Confidence            4678999998 7 49999999999999999999874

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=91.88  E-value=0.19  Score=42.07  Aligned_cols=34  Identities=18%  Similarity=0.325  Sum_probs=29.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +..+|+|||+|-.|.++|+.|...++  .+.++|..
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            44679999999999999999998886  79999864

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=91.86  E-value=0.21  Score=41.86  Aligned_cols=32  Identities=31%  Similarity=0.353  Sum_probs=29.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++|+|||+|..|...+..|.+.|++|++++..
T Consensus         2 ~~Ililg~g~~g~~~~~a~~~~G~~v~~~~~~   33 (380)
T 3ax6_A            2 KKIGIIGGGQLGKMMTLEAKKMGFYVIVLDPT   33 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46999999999999999999999999999975

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=91.86  E-value=0.19  Score=41.67  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=28.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      +|+|||+|..|.+.|+.|+..++ .+.++|..
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~   32 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIART   32 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            58999999999999999999898 59999975

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=91.86  E-value=0.57  Score=40.03  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=24.9

Q ss_pred             CEEEECCCHHH----------HHHHHHHHHcCCe-----EEEEecCCCCCC
Q 041557           65 HVKIIGGGMAV----------LACALRLDKRGVK-----SNVFDMGNPDLE  100 (189)
Q Consensus        65 ~v~IiG~G~~G----------l~~A~~l~~~g~~-----v~v~e~~~~~~g  100 (189)
                      +++|||+|+.|          +.+|..|.+.|.+     |+++++. +.++
T Consensus       151 ~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~-~~~~  200 (437)
T 3sx6_A          151 GPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSE-PYIG  200 (437)
T ss_dssp             CCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESS-SSTT
T ss_pred             CEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCC-cccc
Confidence            46899997653          4445777788875     9999986 5543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	189
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	5e-09
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	1e-08
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	2e-07
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	3e-07
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	3e-07
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	4e-06
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	5e-05
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	6e-05
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	4e-04
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	4e-04
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	0.001
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	0.001
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	0.002
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	0.002
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	0.003
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	0.003
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	0.004

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 52.1 bits (123), Expect = 5e-09
 Identities = 17/122 (13%), Positives = 33/122 (27%), Gaps = 3/122 (2%)

Query: 66  VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVN 125
           V ++GGG++ LA A  L  RG  + + +  +  L G +GT  +       +     F   
Sbjct: 3   VAVVGGGISGLAVAHHLRSRGTDAVLLE-SSARLGGAVGTHALAGYL--VEQGPNSFLDR 59

Query: 126 DSRFGELVDVCWKVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKT 185
           +     L         +     +       T                 + +         
Sbjct: 60  EPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVA 119

Query: 186 AW 187
             
Sbjct: 120 GE 121

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 51.3 bits (121), Expect = 1e-08
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 59  PISSNP-HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDH 117
             +SNP HV I+G GMA L+ A  L   G +  V +  +    GR+ T          + 
Sbjct: 25  KATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLE-ASERPGGRVRTYRNEEAGWYANL 83

Query: 118 ATQFFTVNDSRFGELVDVCW 137
                        E +    
Sbjct: 84  GPMRLPEKHRIVREYIRKFD 103

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 47.9 bits (112), Expect = 2e-07
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 66  VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVN 125
           V +IG G++ LA A +L   G+   VF+       G++ +         +D      T +
Sbjct: 4   VAVIGAGVSGLAAAYKLKIHGLNVTVFE-AEGKAGGKLRSVSQDGLI--WDEGANTMTES 60

Query: 126 DSRFGELVD 134
           +     L+D
Sbjct: 61  EGDVTFLID 69

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 47.3 bits (110), Expect = 3e-07
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 5/127 (3%)

Query: 64  PHVKIIGGGMAVLACALRLDKRGVKS-NVFDMGNPDLEGRMGTRMIGRQPLIFDH-ATQF 121
           P V ++G GM+ ++ A RL + G+    + +     + GRM         +  +  A   
Sbjct: 1   PRVIVVGAGMSGISAAKRLSEAGITDLLILE-ATDHIGGRMHKTNFA--GINVELGANWV 57

Query: 122 FTVNDSRFGELVDVCWKVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE 181
             VN  +   +  +    + L  +    +       K +          +       + E
Sbjct: 58  EGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEE 117

Query: 182 NGKTAWA 188
            G+   A
Sbjct: 118 MGEKLSA 124

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 3e-07
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 59  PISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDH- 117
           P      V IIG G++ LA A +L   G+   + +     + GR+ T   G      D  
Sbjct: 1   PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE-ARDRVGGRVATFRKGNYV--ADLG 57

Query: 118 ATQFFTVNDSRFGELVD 134
           A     +  +    +  
Sbjct: 58  AMVVTGLGGNPMAVVSK 74

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-06
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 66  VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVN 125
           V ++GGG++ +A A  L   G+   V +     + GR  T    ++    D    +    
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGLNVVVLE-ARDRVGGRTYTLRN-QKVKYVDLGGSYVGPT 59

Query: 126 DSRFGELVD 134
            +R   L  
Sbjct: 60  QNRILRLAK 68

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 11/112 (9%)

Query: 68  IIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDS 127
           I+G G+    CA  L K   K  V +     + G   T        I  +    F  ND 
Sbjct: 6   IVGSGLFGAVCANELKKLNKKVLVIE-KRNHIGGNAYTEDCEGI-QIHKYGAHIFHTNDK 63

Query: 128 RFGELVDVCWKVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYL 179
              + V+   +         +                    N+  F+ MW +
Sbjct: 64  YIWDYVNDLVEFNRFTNSPLAI---------YKDKLFNLPFNMNTFHQMWGV 106

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 40.1 bits (92), Expect = 6e-05
 Identities = 20/137 (14%), Positives = 37/137 (27%), Gaps = 12/137 (8%)

Query: 62  SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT-----------RMIGR 110
           +   + ++GG ++ L  AL L   GV  +V++     L G                  G 
Sbjct: 3   TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGV 62

Query: 111 QPLIFDHATQFFTVNDSRFGELVDVCWKVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNL 170
           +       +      D+  GE V           Y                  +  +  L
Sbjct: 63  ELDSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGL 122

Query: 171 EPFNGMWYL-GENGKTA 186
              +    +   +G  A
Sbjct: 123 SQDSETVQMRFSDGTKA 139

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNP 97
          + S   V ++G G+  L+ AL L ++G   ++     P
Sbjct: 3  MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP 40

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 10/77 (12%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 63  NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT-RMIGRQPLIFDHATQF 121
           +  + I+G G +      +L ++G + ++ D     + G     R      ++  +    
Sbjct: 2   SKKILIVGAGFSGAVIGRQLAEKGHQVHIID-QRDHIGGNSYDARDSETNVMVHVYGPHI 60

Query: 122 FTVNDSRFGELVDVCWK 138
           F  ++      V+   +
Sbjct: 61  FHTDNETVWNYVNKHAE 77

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 1/101 (0%)

Query: 66  VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVN 125
           V ++G G+     +  L   G K    D       G   +  + +    F          
Sbjct: 8   VIVLGTGITECILSGLLSVDGKKVLHID-KQDHYGGEAASVTLSQLYEKFKQNPISKEER 66

Query: 126 DSRFGELVDVCWKVVLLLGYSKSQNLNIFQTSKVNVVRTCW 166
           +S+FG+  D    ++     +  +  NI   + V       
Sbjct: 67  ESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFK 107

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 68  IIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQ 111
           ++G G+     +  +   G K    D  NP   G   +     +
Sbjct: 11  VLGTGLTECILSGIMSVNGKKVLHMD-RNPYYGGESSSITPLEE 53

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 66 VKIIGGGMAVLACALRLDKRGVKSNVFD 93
          V IIG G + L     L K G+ + + +
Sbjct: 5  VAIIGAGPSGLLLGQLLHKAGIDNVILE 32

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNP 97
          S++  V ++G G   +A   +L K+GVK+ + D  +P
Sbjct: 1  STHFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 57 TAPISSNPH----VKIIGGGMAVLACALRLDKRGVKSNVFDMGNP 97
           A ++S PH    V ++G G A  + A+     G K  + +    
Sbjct: 6  QAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPV 50

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 1/74 (1%)

Query: 66  VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVN 125
           V +IGGG + L  A+   + G    + D G   L  ++     GR  +           +
Sbjct: 5   VIVIGGGPSGLMAAIGAAEEGANVLLLDKG-NKLGRKLAISGGGRCNVTNRLPLDEIVKH 63

Query: 126 DSRFGELVDVCWKV 139
               G  +   + +
Sbjct: 64  IPGNGRFLYSAFSI 77

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 2/72 (2%)

Query: 66  VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVN 125
           V IIG G A LA A+     G K  + +     + G       G              + 
Sbjct: 26  VVIIGSGGAGLAAAVSARDAGAKVILLEKE--PIPGGNTKLAAGGMNAAETKPQAKLGIE 83

Query: 126 DSRFGELVDVCW 137
           D +   + D   
Sbjct: 84  DKKQIMIDDTMK 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.53
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.52
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.5
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.47
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.45
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.44
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.4
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.38
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.38
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.31
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.3
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.3
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.29
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.29
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.24
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.21
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.21
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.14
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.0
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.97
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.97
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.93
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.89
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.89
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.89
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.88
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.88
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.88
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.87
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.86
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.85
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.85
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.83
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.83
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.83
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.82
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.82
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.82
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.82
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.79
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.77
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.74
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.74
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.73
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.71
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.69
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.67
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.66
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.66
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.64
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.63
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.62
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.62
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.6
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.59
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.59
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.58
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.56
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.56
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.54
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.53
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.53
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.51
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.5
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.5
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.47
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.43
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.42
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.41
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.4
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.36
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.27
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.26
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.25
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.24
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.15
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.15
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.13
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.11
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.11
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.04
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.0
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.9
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.87
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.87
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.85
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.75
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.75
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.71
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.7
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.67
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.56
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.24
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.22
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.17
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.12
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.98
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.79
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.74
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.7
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.64
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.64
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.61
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.59
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.56
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.44
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.43
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.42
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.4
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.34
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.19
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.06
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.95
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.91
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.89
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.86
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	95.8
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.76
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.69
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.67
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.66
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.64
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.62
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.6
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.59
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.55
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	95.52
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.43
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.37
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.29
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.22
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.12
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.08
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.98
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.94
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.92
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	94.89
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	94.88
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.85
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.83
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.74
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.65
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.64
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.52
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.42
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.34
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.3
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.28
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	94.24
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	93.86
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	93.85
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	93.85
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	93.83
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	93.76
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.65
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	93.65
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	93.63
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.54
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.5
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.44
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.43
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.4
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	93.33
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.3
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.26
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.06
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.98
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	92.95
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.91
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	92.81
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.45
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.29
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	92.29
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	92.21
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	92.18
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	92.06
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.4
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	91.27
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	91.16
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	90.82
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	90.46
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.31
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	90.28
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	89.98
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	89.79
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	89.79
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	89.67
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	89.64
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	89.42
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	89.19
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	89.17
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	88.97
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	88.56
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	88.54
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	88.49
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.43
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	88.36
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.06
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	87.99
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	87.98
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	87.75
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	87.74
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	87.45
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	87.44
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	87.42
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	87.38
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	87.36
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.18
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	87.17
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.14
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	87.14
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	87.14
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.0
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	86.99
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	86.89
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	86.86
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	86.76
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	86.49
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	86.24
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	86.21
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	86.14
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	85.94
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	85.81
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	85.71
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.65
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	85.56
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	85.55
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	85.43
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	85.22
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	85.06
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	85.02
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	85.01
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	84.66
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	84.62
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.56
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	84.55
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	84.53
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	84.23
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	84.08
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	84.06
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	84.02
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	83.88
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	83.8
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	83.78
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	83.77
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	83.74
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	83.64
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	83.53
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	83.5
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	83.33
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	83.1
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	82.98
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	82.73
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.5
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	82.42
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	82.15
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	82.12
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	82.08
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	81.95
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	81.77
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	81.75
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	81.44
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	81.3
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	81.17
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	81.13
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	81.09
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	81.07
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	80.84
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	80.44
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	80.3
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	80.11
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	80.1
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	80.01

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9.1e-15  Score=115.79  Aligned_cols=73  Identities=22%  Similarity=0.272  Sum_probs=60.1

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeC-CchhHHHHHH
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVN-DSRFGELVDV  135 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~l~~  135 (189)
                      ..+..+|+|||||++||+||+.|+++|++|+|||+. +.+||++.+.+.++.  .+|.|++++... .+.+..++++
T Consensus         2 ~~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~-~r~GGr~~t~~~~g~--~~d~G~~~i~~~~~~~~~~l~~~   75 (449)
T d2dw4a2           2 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR-DRVGGRVATFRKGNY--VADLGAMVVTGLGGNPMAVVSKQ   75 (449)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS-SSSBTTCCEEEETTE--EEESSCCEECCSBTCHHHHHHHH
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC-CCCcccEEEEEeCCE--EEECCCEEECCCCCcHHHHHHHH
Confidence            345678999999999999999999999999999997 999999999887654  589999988743 3345555444

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.52  E-value=9.5e-15  Score=114.67  Aligned_cols=69  Identities=26%  Similarity=0.435  Sum_probs=59.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHH
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDV  135 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~  135 (189)
                      |+|+|||||++||+||++|+++|++|+|||++ +.+||++.+...++  +.+|+|++++....+.+.++++.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~-~~~GG~~~t~~~~g--~~~d~G~~~~~~~~~~~~~~~~~   70 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAE-GKAGGKLRSVSQDG--LIWDEGANTMTESEGDVTFLIDS   70 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSS-SSSCSSCCEEEETT--EEEESSCCCBCCCSHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCC-CCCcCceEEeccCC--EEEecCceEEeCCCHHHHHHHHH
Confidence            78999999999999999999999999999998 99999999887765  35888998888776666665554

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.50  E-value=2.7e-14  Score=114.62  Aligned_cols=75  Identities=23%  Similarity=0.232  Sum_probs=60.5

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHH
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDV  135 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~  135 (189)
                      ....++|+|||||++||++|+.|+++|++|+|||+. +.+||++.+...+.....+|.|..++....+.+.++++.
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~-~~~GG~~~t~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~  101 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEAS-ERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRK  101 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSS-SSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHH
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCCeeEEEecCCCCceeccCceeecCccHHHHHHHHH
Confidence            345678999999999999999999999999999998 999999988776544456788887776655555554443

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.47  E-value=3.3e-14  Score=108.61  Aligned_cols=58  Identities=21%  Similarity=0.401  Sum_probs=50.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCCcCceeeeeCCcceeeecceeeEee
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV-KSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTV  124 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~  124 (189)
                      +||+|||||++||+||+.|+++|+ +|+|||+. +.+||++.+...++.  .+|+|++++..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~-~~~GG~~~t~~~~g~--~~d~G~~~~~~   59 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEAT-DHIGGRMHKTNFAGI--NVELGANWVEG   59 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSS-SSSBTTSCEEEETTE--EEESSCCEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECC-CCCCceEEEeccCCE--EEecCCeEEec
Confidence            479999999999999999999997 69999998 999999998877653  57888877764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.45  E-value=6.7e-14  Score=110.01  Aligned_cols=68  Identities=24%  Similarity=0.442  Sum_probs=58.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHH
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDV  135 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~  135 (189)
                      ||+|||||++||++|+.|+++|++|+|||++ +.+||++.+...++.  .+|.|++++....+.+.++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~-~~~GG~~~t~~~~g~--~~d~G~~~~~~~~~~~~~l~~~   69 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESS-ARLGGAVGTHALAGY--LVEQGPNSFLDREPATRALAAA   69 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSS-SSSBTTCCEEEETTE--EEESSCCCEETTCHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecC-CCCCceEEEEeeCCE--EEecCceEEecCCHHHHHHHHH
Confidence            6999999999999999999999999999998 999999998777653  5888988887766666655544

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.44  E-value=8.8e-14  Score=114.80  Aligned_cols=122  Identities=13%  Similarity=0.089  Sum_probs=72.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhh
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVV  140 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~  140 (189)
                      +...||+|||||++||++|..|.++|++|+|||+. +.+||.|...+.++..  .+.....+......  .....+....
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~-~~iGGtW~~n~ypg~~--~d~~~~~~~~s~~~--~~~~~~~~~~   79 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETA-GDVGGVWYWNRYPGAR--CDIESIEYCYSFSE--EVLQEWNWTE   79 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCTHHHHCCCTTCB--CSSCTTTSSCCSCH--HHHHHCCCCB
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcC-CCcccccccCCCCCce--eccccccccccccc--cccCCCCCcc
Confidence            45678999999999999999999999999999998 9999998654433211  22111111111110  0011100000


Q ss_pred             hhcCchHHHHHHhc--cCCCc--EEEeCceeEEEEEeC--CeEEEEeCCeeee
Q 041557          141 LLLGYSKSQNLNIF--QTSKV--NVVRTCWISNLEPFN--GMWYLGENGKTAW  187 (189)
Q Consensus       141 ~~~~~~~~~~~l~~--~~~~v--~v~~~t~V~~i~~~~--~~w~l~~~~~~~~  187 (189)
                      .......+.+++..  ...++  .|+++++|+++++++  +.|+|++.++..+
T Consensus        80 ~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~  132 (298)
T d1w4xa1          80 RYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRI  132 (298)
T ss_dssp             SSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEE
T ss_pred             ccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeecccccccc
Confidence            00001111122111  00123  699999999999754  5799999877654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.2e-13  Score=110.12  Aligned_cols=69  Identities=22%  Similarity=0.295  Sum_probs=56.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHH
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDV  135 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~  135 (189)
                      ||+|||||++||++|+.|+++|++|+|||+. +.+||++.+.+.... ..+|.|++++....+.+.+++++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~-~~~GGr~~t~~~~~g-~~~d~G~~~~~~~~~~~~~l~~~   69 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEAR-DRVGGRTYTLRNQKV-KYVDLGGSYVGPTQNRILRLAKE   69 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESS-SSSBTTCCEECCTTT-SCEESSCCEECTTCHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecC-CCCcceeeEEECCCC-cEEeCCceEeCCCChHHHHHHHH
Confidence            7999999999999999999999999999998 999999988665432 24788888887666656555544

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.38  E-value=5.9e-13  Score=104.96  Aligned_cols=40  Identities=28%  Similarity=0.457  Sum_probs=37.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ++||+|||||++||++|+.|+++|++|+|||++ +.+|++.
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~-~~~g~~~   41 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKG-NKLGRKL   41 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC-CCCCcce
Confidence            689999999999999999999999999999998 8888754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.38  E-value=4.8e-13  Score=110.70  Aligned_cols=43  Identities=21%  Similarity=0.197  Sum_probs=38.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcCcee
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGRMGT  105 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~~~~  105 (189)
                      .-++|+|||||++||++|..|++.|  ++|+||||. ..+||.|..
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~-~~iGG~W~~   47 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR-GSPGGVWNY   47 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS-SSSSTTCSC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECC-CCCCCcccc
Confidence            3478999999999999999998876  599999998 999999864

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.3e-12  Score=100.61  Aligned_cols=45  Identities=27%  Similarity=0.530  Sum_probs=41.1

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           59 PISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        59 ~~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      +....++|+||||||+||++|+.|+++|++|+|||+. +.+||++.
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~-~~~GG~l~   83 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAH-SEIGGQFN   83 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS-SSSCTTHH
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEecc-CccCceEE
Confidence            3446789999999999999999999999999999998 99999874

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.30  E-value=2.7e-12  Score=106.16  Aligned_cols=72  Identities=13%  Similarity=0.243  Sum_probs=59.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeC-CcceeeecceeeEeeCCchhHHHHHH
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIG-RQPLIFDHATQFFTVNDSRFGELVDV  135 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~l~~  135 (189)
                      .++|+|||||++||++|+.|+++|++|+|||+. +.+||++.+.... .....++.|++.|+...+.+.+++..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~-~~iGG~~~t~~~~~~g~~~~~~Gphif~t~~~~v~~~~~~   74 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQR-DHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNK   74 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS-SSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHT
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECC-CCCcCeeeEEEecCCCceEEecCceeecCccHHHHHHHHH
Confidence            578999999999999999999999999999997 9999999876542 22345788999998877666555543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.30  E-value=7.6e-12  Score=99.53  Aligned_cols=40  Identities=38%  Similarity=0.531  Sum_probs=36.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ..+||+|||||++||++|+.|+++|++|+|||+. +.+|+.
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~-~~~G~k   42 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNG-KKIGRK   42 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCCc
Confidence            3579999999999999999999999999999998 888754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=1.6e-12  Score=99.03  Aligned_cols=46  Identities=20%  Similarity=0.218  Sum_probs=42.0

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceee
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTR  106 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~  106 (189)
                      +...+||+|||||++||++|+.|+++|++|+|+|++ +.+||++++.
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~-~~~GG~~~t~   47 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQ-DHYGGEAASV   47 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCGGGCEE
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCC-CCCCcceEEe
Confidence            346789999999999999999999999999999998 9999998653

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=1.9e-12  Score=106.09  Aligned_cols=71  Identities=23%  Similarity=0.231  Sum_probs=59.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHH
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVC  136 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~  136 (189)
                      +||+|||||++||++|+.|+++|++|+|||+. +.+||++.+....+.. ..+.|+++|+..++.+..++..+
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~-~~iGG~~~t~~~~g~~-~~~~G~h~f~t~~~~v~~~~~~~   72 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKR-NHIGGNAYTEDCEGIQ-IHKYGAHIFHTNDKYIWDYVNDL   72 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSS-SSSSGGGCEEEETTEE-EETTSCCCEEESCHHHHHHHHTT
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECC-CCcccceEEeCcCCEE-EeecCcEEEEecchHHHHHhhcc
Confidence            47999999999999999999999999999997 9999999887665432 35779999988887776665543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.21  E-value=5.2e-11  Score=93.66  Aligned_cols=39  Identities=26%  Similarity=0.543  Sum_probs=34.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      +...+|+|||||++||++|..|+++|++|+|||+. +.++
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~-~~~~   40 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERS-PQPL   40 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSC
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCC-CCCC
Confidence            34678999999999999999999999999999996 5543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.21  E-value=9e-11  Score=93.71  Aligned_cols=38  Identities=26%  Similarity=0.355  Sum_probs=34.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      +++||+|||||++|+++|++|+++|++|+|+|+. ..++
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~-~~~~   39 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF-DPPH   39 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC-CCCC
Confidence            5789999999999999999999999999999996 5443

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.14  E-value=8.6e-11  Score=93.32  Aligned_cols=34  Identities=29%  Similarity=0.457  Sum_probs=32.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++||+|||||++|+++|++|+++|++|+|+|++
T Consensus         3 ~~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~   36 (276)
T d1ryia1           3 RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESG   36 (276)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4579999999999999999999999999999996

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.00  E-value=3.1e-09  Score=75.21  Aligned_cols=79  Identities=14%  Similarity=0.170  Sum_probs=58.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||||+.|+-+|..|++.|.+|+|+|+. +.+...            +          ++.+.+.+.+       
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~-~~il~~------------~----------d~~~~~~l~~-------   71 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGA-GEILSG------------F----------EKQMAAIIKK-------   71 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-SSSSTT------------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEec-ceeccc------------c----------cchhHHHHHH-------
Confidence            468999999999999999999999999999997 543211            1          1223333222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                              .+..  .|++++++++|++++..+++..++.
T Consensus        72 --------~l~~--~GI~i~~~~~v~~i~~~~~~~~v~~  100 (117)
T d1ebda2          72 --------RLKK--KGVEVVTNALAKGAEEREDGVTVTY  100 (117)
T ss_dssp             --------HHHH--TTCEEEESEEEEEEEEETTEEEEEE
T ss_pred             --------HHHh--cCCEEEcCCEEEEEEEcCCEEEEEE
Confidence                    1221  3899999999999999888877654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=1e-10  Score=90.87  Aligned_cols=41  Identities=22%  Similarity=0.285  Sum_probs=37.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcC-------CeEEEEecCCCCCCcCce
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRG-------VKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g-------~~v~v~e~~~~~~gg~~~  104 (189)
                      .++|+|||+|||||+||+.|+++|       ++|+|||+. +.+||.+.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~-~~~GG~~~   49 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEML-PTPWGLVR   49 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESS-SSCSTHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecC-CCCCCeee
Confidence            358999999999999999999998       579999998 99999874

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=3.5e-09  Score=75.03  Aligned_cols=85  Identities=13%  Similarity=0.075  Sum_probs=61.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||||+.|+-+|..|++.|.+|+|+|+. +.+...            +          ++.+.+.+.+       
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~-~~~l~~------------~----------d~~~~~~~~~-------   70 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMF-DAPLPS------------F----------DPMISETLVE-------   70 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSSTT------------S----------CHHHHHHHHH-------
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeec-chhhhh------------c----------chhhHHHHHH-------
Confidence            367999999999999999999999999999997 443211            1          2223332222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCC-eEEEEeCCeeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNG-MWYLGENGKTAW  187 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~-~w~l~~~~~~~~  187 (189)
                              .+..  .|++++++++|+.++..++ .+++.+++++.+
T Consensus        71 --------~l~~--~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~  106 (116)
T d1gesa2          71 --------VMNA--EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSE  106 (116)
T ss_dssp             --------HHHH--HSCEEECSCCEEEEEECTTSCEEEEETTSCEE
T ss_pred             --------HHHH--CCCEEEeCCEEEEEEEcCCcEEEEEECCCCEE
Confidence                    1111  2899999999999988754 578888877654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.93  E-value=3.4e-10  Score=85.47  Aligned_cols=41  Identities=22%  Similarity=0.438  Sum_probs=37.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCCCcCce
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMGNPDLEGRMG  104 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~~~~~gg~~~  104 (189)
                      +++|+|||||++||++|.+|+++|++ |+|||+. +.+||.+.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~-~~~gg~~~   45 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQ-EYVGGLST   45 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS-SSCSTHHH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEec-Ccccchhh
Confidence            57899999999999999999999985 9999998 89988754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.89  E-value=1e-08  Score=72.83  Aligned_cols=85  Identities=12%  Similarity=0.180  Sum_probs=61.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++|+|||||+.|+-+|..|++.|.+|+|+|+. +.+-.                      ..++.+.+.+.+.      
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~-~~il~----------------------~~d~~~~~~~~~~------   72 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARG-NRILR----------------------KFDESVINVLEND------   72 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSS-SSSCT----------------------TSCHHHHHHHHHH------
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehh-ccccc----------------------cccHHHHHHHHHH------
Confidence            468999999999999999999999999999986 43210                      1122343333321      


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeC-CeEEEEeCCeeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFN-GMWYLGENGKTAW  187 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~-~~w~l~~~~~~~~  187 (189)
                               +..  .|++++++++|++++..+ +.+++++.+++..
T Consensus        73 ---------l~~--~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~  107 (117)
T d1onfa2          73 ---------MKK--NNINIVTFADVVEIKKVSDKNLSIHLSDGRIY  107 (117)
T ss_dssp             ---------HHH--TTCEEECSCCEEEEEESSTTCEEEEETTSCEE
T ss_pred             ---------HHh--CCCEEEECCEEEEEEEcCCCeEEEEECCCCEE
Confidence                     111  389999999999999765 4577888777553

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=1e-09  Score=83.21  Aligned_cols=40  Identities=15%  Similarity=0.265  Sum_probs=34.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      +++||+|||||++||.+|.+|++.|.+|+|+|+.  ..+|++
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~--~~~g~~   43 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM--EKGGQL   43 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS--STTGGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEee--cccccc
Confidence            3578999999999999999999999999999985  445544

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.89  E-value=9.3e-10  Score=86.37  Aligned_cols=45  Identities=20%  Similarity=0.289  Sum_probs=41.1

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCcee
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT  105 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~  105 (189)
                      ....++|+|||||++||++|..|+++|++|+|||+. +.+||.+..
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~-~~~GG~~~~   90 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTA-EKIGGHLNQ   90 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSTTTTHHH
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeec-cccCCcccc
Confidence            346789999999999999999999999999999998 999998754

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.88  E-value=9.5e-10  Score=84.59  Aligned_cols=42  Identities=26%  Similarity=0.375  Sum_probs=38.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      ..+||+||||||+||++|.+|+++|.+|+|+|+. ..+||.+.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~-~~~GG~~~   43 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKR-GALGGTCL   43 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECS-SSSCCSHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEec-CCCCCeee
Confidence            4689999999999999999999999999999997 88999754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.88  E-value=2e-08  Score=80.60  Aligned_cols=32  Identities=38%  Similarity=0.536  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .||+|||||++|+++|+.|+++|. +|+|+|++
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            489999999999999999999996 69999996

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.88  E-value=1.1e-09  Score=84.89  Aligned_cols=35  Identities=26%  Similarity=0.465  Sum_probs=32.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...++|+|||||++||++|+.|+++|++|+|||+.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            34678999999999999999999999999999996

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.87  E-value=7.4e-09  Score=81.05  Aligned_cols=38  Identities=26%  Similarity=0.558  Sum_probs=33.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCCcC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV-KSNVFDMGNPDLEGR  102 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~~~~~gg~  102 (189)
                      .+|+|||||++||++|+.|+++|+ +|+|||+. +.+...
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~-~~~~~~   40 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESS-SEIRPL   40 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESS-SSCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCC-CCCCCC
Confidence            479999999999999999999996 89999997 776543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.86  E-value=7.6e-10  Score=86.12  Aligned_cols=40  Identities=20%  Similarity=0.277  Sum_probs=36.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCCcCce
Q 041557           64 PHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~gg~~~  104 (189)
                      ++|+|||||||||+||.+|++.  |++|+|||+. +.+||++.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~-~~~gG~~~   43 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ-LVPFGLVR   43 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS-SSSCTHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC-CCCCceeh
Confidence            4799999999999999999876  7899999998 99999864

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.85  E-value=2.7e-09  Score=81.29  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=31.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +++|+|||||++||.||.+|++.|++|+|+|+.
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            578999999999999999999999999999975

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=5.2e-10  Score=86.54  Aligned_cols=42  Identities=26%  Similarity=0.359  Sum_probs=38.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      +.+||+|||+|++||+||.+|++.|++|+|||+. +.+||.+.
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~-~~~GG~~~   45 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKR-GKLGGTCL   45 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSSHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEec-CCcceEeE
Confidence            4689999999999999999999999999999997 88999753

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.3e-08  Score=71.57  Aligned_cols=78  Identities=15%  Similarity=0.089  Sum_probs=58.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||||+.|+-+|..|++.|.+|+|+++. +.+-..            +          ++.+.+.+.+.      
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~~l~~------------~----------d~~~~~~~~~~------   72 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRH-DKVLRS------------F----------DSMISTNCTEE------   72 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSCTT------------S----------CHHHHHHHHHH------
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeec-cccccc------------h----------hhHHHHHHHHH------
Confidence            368999999999999999999999999999997 433111            1          22233332221      


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEE
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLG  180 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~  180 (189)
                               +..  .|++++++++|+++++.++++.++
T Consensus        73 ---------l~~--~Gv~i~~~~~v~~i~~~~~g~~v~   99 (125)
T d3grsa2          73 ---------LEN--AGVEVLKFSQVKEVKKTLSGLEVS   99 (125)
T ss_dssp             ---------HHH--TTCEEETTEEEEEEEEETTEEEEE
T ss_pred             ---------HHH--CCCEEEeCCEEEEEEEcCCeEEEE
Confidence                     111  389999999999999998887764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.83  E-value=1.6e-08  Score=72.21  Aligned_cols=82  Identities=17%  Similarity=0.173  Sum_probs=57.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhh
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVL  141 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~  141 (189)
                      ..++|+|||||+.|+-+|..|++.|.+|+|+|+. +.+-++.           +          ++++.+.+..+     
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~-~~~l~~~-----------~----------d~~~~~~~~~~-----   81 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL-DRPLGVY-----------L----------DKEFTDVLTEE-----   81 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-SSTTTTT-----------C----------CHHHHHHHHHH-----
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEec-Ccccccc-----------c----------chhhHHHHHHH-----
Confidence            3578999999999999999999999999999996 4432111           1          12333333332     


Q ss_pred             hcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeC
Q 041557          142 LLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGEN  182 (189)
Q Consensus       142 ~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~  182 (189)
                                +..  .|++++++++|++++.++....+..+
T Consensus        82 ----------l~~--~gv~~~~~~~v~~i~~~~~~~~v~~d  110 (123)
T d1nhpa2          82 ----------MEA--NNITIATGETVERYEGDGRVQKVVTD  110 (123)
T ss_dssp             ----------HHT--TTEEEEESCCEEEEECSSBCCEEEES
T ss_pred             ----------hhc--CCeEEEeCceEEEEEcCCCEEEEEeC
Confidence                      221  38999999999999875544444433

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.83  E-value=1.6e-08  Score=73.29  Aligned_cols=88  Identities=14%  Similarity=0.132  Sum_probs=61.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhh
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVL  141 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~  141 (189)
                      ..++++|||||+.|+-+|..|++.|++|+|+|+. +.+..+.                     .++.+.+.+...     
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~-~~~l~~~---------------------~~~~~~~~~~~~-----   86 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTA-ARVLERV---------------------TAPPVSAFYEHL-----   86 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSTTTTT---------------------SCHHHHHHHHHH-----
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeec-ccccccc---------------------cchhhhhhhhhc-----
Confidence            3578999999999999999999999999999997 5543321                     012233332221     


Q ss_pred             hcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe---EEEEeCCeeeee
Q 041557          142 LLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM---WYLGENGKTAWA  188 (189)
Q Consensus       142 ~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~---w~l~~~~~~~~~  188 (189)
                                +..  .|++++++++|+.++...+.   -.+.+.++..+.
T Consensus        87 ----------~~~--~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~  124 (133)
T d1q1ra2          87 ----------HRE--AGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLP  124 (133)
T ss_dssp             ----------HHH--HTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEE
T ss_pred             ----------ccc--cccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEE
Confidence                      111  28999999999999876543   235667766543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.82  E-value=2.2e-08  Score=71.17  Aligned_cols=79  Identities=11%  Similarity=0.082  Sum_probs=58.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||||+.|+-+|..|++.|.+|+|+++. +.+-..                      .++++.+.+..+.     
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~-~~ll~~----------------------~d~ei~~~l~~~l-----   73 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAM-DKFLPA----------------------VDEQVAKEAQKIL-----   73 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-SSSSTT----------------------SCHHHHHHHHHHH-----
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEee-cccCCc----------------------ccchhHHHHHHHH-----
Confidence            477999999999999999999999999999986 332111                      1233433333322     


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                                ..  .|++++++++|++++..+++.+|+.
T Consensus        74 ----------~~--~Gv~i~~~~~v~~i~~~~~~v~v~~  100 (119)
T d3lada2          74 ----------TK--QGLKILLGARVTGTEVKNKQVTVKF  100 (119)
T ss_dssp             ----------HH--TTEEEEETCEEEEEEECSSCEEEEE
T ss_pred             ----------Hh--cCceeecCcEEEEEEEeCCEEEEEE
Confidence                      11  3899999999999999888766654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=5.8e-10  Score=91.09  Aligned_cols=44  Identities=20%  Similarity=0.223  Sum_probs=39.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCCcCcee
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLEGRMGT  105 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~gg~~~~  105 (189)
                      ...+||+|||+|++||++|+.|+++  |++|+|||+. +.+||.+..
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~   93 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS-VAPGGGSWL   93 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS-SSCCTTTTC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcC-CCCcceeEe
Confidence            3467899999999999999999975  9999999998 999998753

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=1.1e-09  Score=87.88  Aligned_cols=42  Identities=21%  Similarity=0.339  Sum_probs=38.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCCCCcCce
Q 041557           62 SNPHVKIIGGGMAVLACALRLDK-RGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~-~g~~v~v~e~~~~~~gg~~~  104 (189)
                      .++||+|||||++||++|+.|++ .|++|+|||+. +.+||.+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~-~~~GG~~~   74 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS-VSPGGGAW   74 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESS-SSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecC-CCCCCcee
Confidence            46889999999999999999987 59999999997 89999875

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.82  E-value=2.3e-09  Score=82.20  Aligned_cols=40  Identities=23%  Similarity=0.360  Sum_probs=35.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ..+||+||||||+||+||.+|++.|++|+|+|+. ...++.
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~-~~~~~~   41 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKY-KGKEGK   41 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECC-BCTTSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecc-cCCCcc
Confidence            4689999999999999999999999999999986 554444

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=2.4e-08  Score=71.31  Aligned_cols=74  Identities=15%  Similarity=0.214  Sum_probs=54.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||||+.|+-+|..|++.|.+|+|+|+. +.+-..            +          ++++.+.+...      
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~-~~~l~~------------~----------d~ei~~~l~~~------   73 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQ-PQIGAS------------M----------DGEVAKATQKF------   73 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-SSSSSS------------S----------CHHHHHHHHHH------
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEec-cccchh------------h----------hhhhHHHHHHH------
Confidence            368999999999999999999999999999986 443211            1          23344333332      


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM  176 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~  176 (189)
                               |..  .|++++++++|++++..+++
T Consensus        74 ---------l~~--~GV~i~~~~~v~~v~~~~~~   96 (122)
T d1v59a2          74 ---------LKK--QGLDFKLSTKVISAKRNDDK   96 (122)
T ss_dssp             ---------HHH--TTCEEECSEEEEEEEEETTT
T ss_pred             ---------HHh--ccceEEeCCEEEEEEEeCCC
Confidence                     221  38999999999999987664

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.77  E-value=2.2e-09  Score=83.63  Aligned_cols=40  Identities=23%  Similarity=0.351  Sum_probs=37.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+||||||+||++|.+|++.|++|+|||+. +.+||.+
T Consensus         6 dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~-~~~GG~~   45 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERY-KTLGGVC   45 (229)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SCSSHHH
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecc-CCCCCee
Confidence            589999999999999999999999999999997 8888864

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=2.1e-09  Score=82.77  Aligned_cols=39  Identities=26%  Similarity=0.333  Sum_probs=36.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ++||+|||||++|+++|..|++.|++|+|+|++  .+||.+
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~--~~GGtc   40 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK--ELGGTC   40 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS--CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc--CcCCeE
Confidence            579999999999999999999999999999985  689875

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.74  E-value=4.2e-09  Score=85.04  Aligned_cols=41  Identities=22%  Similarity=0.385  Sum_probs=37.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...+||+|||+|++||++|+.|+++|++|+|+||. +..||.
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~-~~~gG~   54 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKE-PVIGGN   54 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCTT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCCc
Confidence            45689999999999999999999999999999997 777775

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.73  E-value=6.3e-08  Score=69.02  Aligned_cols=83  Identities=19%  Similarity=0.268  Sum_probs=56.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||||+.|+-+|..|+++|.+|+|+|+. +.+..+.                     .++.+.+.+.+       
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~-~~~l~~~---------------------~~~~~~~~~~~-------   80 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQ-PRLMSRA---------------------APATLADFVAR-------   80 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-SSTTTTT---------------------SCHHHHHHHHH-------
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeec-ccccccc---------------------CCHHHHHHHHH-------
Confidence            478999999999999999999999999999997 5432211                     12223333322       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeeee
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAWA  188 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~~  188 (189)
                              .+..  .||+++++++|+.+.  ++.  +.+.++..+.
T Consensus        81 --------~l~~--~GV~i~~~~~v~~~~--~~~--v~l~dg~~i~  112 (121)
T d1d7ya2          81 --------YHAA--QGVDLRFERSVTGSV--DGV--VLLDDGTRIA  112 (121)
T ss_dssp             --------HHHT--TTCEEEESCCEEEEE--TTE--EEETTSCEEE
T ss_pred             --------HHHH--CCcEEEeCCEEEEEe--CCE--EEECCCCEEE
Confidence                    1211  489999999999875  333  4455555543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.71  E-value=3.4e-08  Score=70.51  Aligned_cols=78  Identities=10%  Similarity=0.089  Sum_probs=57.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||||..||-+|..|++.|.+|+|+|++ +.+-..            +          ++.+...+..       
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~-~~~l~~------------~----------d~~~~~~l~~-------   74 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFA-SEIVPT------------M----------DAEIRKQFQR-------   74 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSS-SSSSTT------------S----------CHHHHHHHHH-------
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEc-cccCch------------h----------hhcchhhhhh-------
Confidence            468999999999999999999999999999997 432111            1          2223333222       


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEE
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLG  180 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~  180 (189)
                              .|..  .|++++++++|++++..+++.+++
T Consensus        75 --------~l~~--~GI~i~~~~~v~~i~~~~~~~~v~  102 (123)
T d1dxla2          75 --------SLEK--QGMKFKLKTKVVGVDTSGDGVKLT  102 (123)
T ss_dssp             --------HHHH--SSCCEECSEEEEEEECSSSSEEEE
T ss_pred             --------hhhc--ccceEEcCCceEEEEEccCeEEEE
Confidence                    1221  389999999999999887776654

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.69  E-value=7.4e-09  Score=87.29  Aligned_cols=40  Identities=23%  Similarity=0.421  Sum_probs=36.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDK------RGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~------~g~~v~v~e~~~~~~gg~  102 (189)
                      ..+||+||||||||+++|+.|++      +|++|+|+||+ ..+|..
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~-~~pG~k   76 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKA-AHIGAH   76 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSS-SSTTTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCC-CCCCCC
Confidence            46899999999999999999998      89999999997 777654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.3e-07  Score=68.40  Aligned_cols=86  Identities=14%  Similarity=0.099  Sum_probs=62.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH----cCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDK----RGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWK  138 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~----~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~  138 (189)
                      .++++|||||+.|+-+|..|++    .|.+|+++++. +.+..+.           +          ++.+.+.+.+   
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~-~~~l~~~-----------~----------~~~~~~~~~~---   91 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPE-KGNMGKI-----------L----------PEYLSNWTME---   91 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSS-SSTTTTT-----------S----------CHHHHHHHHH---
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccc-ccCCccc-----------C----------CHHHHHHHHH---
Confidence            4689999999999999998863    58999999986 4433221           1          1122222222   


Q ss_pred             hhhhcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557          139 VVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW  187 (189)
Q Consensus       139 ~~~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~  187 (189)
                                  .+..  .|++++++++|++++.+++...|++++++.+
T Consensus        92 ------------~l~~--~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i  126 (137)
T d1m6ia2          92 ------------KVRR--EGVKVMPNAIVQSVGVSSGKLLIKLKDGRKV  126 (137)
T ss_dssp             ------------HHHT--TTCEEECSCCEEEEEEETTEEEEEETTSCEE
T ss_pred             ------------HHHh--CCcEEEeCCEEEEEEecCCEEEEEECCCCEE
Confidence                        2222  4899999999999999999999998887654

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.66  E-value=8.4e-09  Score=78.96  Aligned_cols=39  Identities=23%  Similarity=0.431  Sum_probs=35.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+||+|||||++||++|.++++.|.+|+|+|+.  .+||.+
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~--~~GG~~   41 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG--NLGGVC   41 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecC--CCCcce
Confidence            579999999999999999999999999999985  778864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.66  E-value=1.6e-07  Score=66.22  Aligned_cols=86  Identities=13%  Similarity=0.069  Sum_probs=59.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc---CCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR---GVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKV  139 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~---g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~  139 (189)
                      .++++|||||+.|+-+|..|...   |.+|+|+|+. +.+-..            +          ++.+.+.+...   
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~-~~iL~~------------~----------d~~~~~~l~~~---   73 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRG-EMILRG------------F----------DHTLREELTKQ---   73 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESS-SSSSTT------------S----------CHHHHHHHHHH---
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEecc-chhhcc------------c----------chHHHHHHHHH---
Confidence            36899999999999999877655   4579999986 332100            1          22333333332   


Q ss_pred             hhhcCchHHHHHHhccCCCcEEEeCceeEEEEEeC-CeEEEEeCCeeeee
Q 041557          140 VLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFN-GMWYLGENGKTAWA  188 (189)
Q Consensus       140 ~~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~-~~w~l~~~~~~~~~  188 (189)
                                  +..  .|++++++++|++++..+ +...+++++++.+.
T Consensus        74 ------------l~~--~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~  109 (117)
T d1aoga2          74 ------------LTA--NGIQILTKENPAKVELNADGSKSVTFESGKKMD  109 (117)
T ss_dssp             ------------HHH--TTCEEEESCCEEEEEECTTSCEEEEETTSCEEE
T ss_pred             ------------HHh--cCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEE
Confidence                        222  389999999999998754 46788888877643

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.64  E-value=5.2e-08  Score=68.57  Aligned_cols=36  Identities=22%  Similarity=0.438  Sum_probs=32.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      .++++|||||+.|+-+|..|++.|.+|+|+|+. +.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~-~~i   56 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEAR-ERI   56 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS-SSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeee-ccc
Confidence            368999999999999999999999999999997 543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.63  E-value=1.6e-07  Score=67.26  Aligned_cols=79  Identities=19%  Similarity=0.171  Sum_probs=58.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL  142 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  142 (189)
                      .++++|||||+.|+-+|..|++.|.+|+|+|+. +.+...                      .++++.+.+....     
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~-~~il~~----------------------~d~~~~~~l~~~l-----   77 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMM-DGLMQG----------------------ADRDLVKVWQKQN-----   77 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSS-SSSSTT----------------------SCHHHHHHHHHHH-----
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEee-cccccc----------------------chhhHHHHHHHHH-----
Confidence            468999999999999999999999999999986 432211                      1233443333322     


Q ss_pred             cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557          143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE  181 (189)
Q Consensus       143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~  181 (189)
                                ..  .|++++++++|++++..+++..+.+
T Consensus        78 ----------~~--~gv~~~~~~~v~~v~~~~~g~~v~~  104 (125)
T d1ojta2          78 ----------EY--RFDNIMVNTKTVAVEPKEDGVYVTF  104 (125)
T ss_dssp             ----------GG--GEEEEECSCEEEEEEEETTEEEEEE
T ss_pred             ----------HH--cCcccccCcEEEEEEEcCCcEEEEE
Confidence                      11  3899999999999999888765543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=1.5e-08  Score=78.57  Aligned_cols=34  Identities=35%  Similarity=0.326  Sum_probs=32.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++||+||||||+||++|.++++.|++|+|+|+.
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3689999999999999999999999999999985

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.62  E-value=1.6e-08  Score=82.25  Aligned_cols=40  Identities=33%  Similarity=0.396  Sum_probs=36.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||+|++||++|+.|+++|++|+|+||. +..||.
T Consensus        22 et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~-~~~gG~   61 (322)
T d1d4ca2          22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKE-PIPGGN   61 (322)
T ss_dssp             EECSEEEECSSHHHHHHHHHHHTTTCCEEEECSS-SSSCTT
T ss_pred             CcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCC-CCCCCc
Confidence            3579999999999999999999999999999997 787775

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.60  E-value=1.2e-07  Score=74.94  Aligned_cols=33  Identities=24%  Similarity=0.442  Sum_probs=31.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+||+|||||+||+.||+++++.|.+++|++++
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEec
Confidence            479999999999999999999999999999986

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.59  E-value=3.4e-07  Score=64.26  Aligned_cols=85  Identities=13%  Similarity=0.039  Sum_probs=57.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc---CCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhh
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR---GVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKV  139 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~---g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~  139 (189)
                      .++++|||||+.|+-+|..|++.   |.+|+|+|+. +.+...            +          ++.+.+.+..    
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~-~~il~~------------~----------d~~~~~~~~~----   70 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRG-DMILRG------------F----------DSELRKQLTE----   70 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESS-SSSSTT------------S----------CHHHHHHHHH----
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccc-cccccc------------c----------cchhhHHHHH----
Confidence            36899999999999999876654   8899999986 433211            1          2223333322    


Q ss_pred             hhhcCchHHHHHHhccCCCcEEEeCceeEEEEEeCC-eEEEEeCCeeee
Q 041557          140 VLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNG-MWYLGENGKTAW  187 (189)
Q Consensus       140 ~~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~-~w~l~~~~~~~~  187 (189)
                                 .+..  .|++++++++|+.++..++ ...+.+.++..+
T Consensus        71 -----------~l~~--~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i  106 (117)
T d1feca2          71 -----------QLRA--NGINVRTHENPAKVTKNADGTRHVVFESGAEA  106 (117)
T ss_dssp             -----------HHHH--TTEEEEETCCEEEEEECTTSCEEEEETTSCEE
T ss_pred             -----------HHhh--CcEEEEcCCEEEEEEECCCCEEEEEECCCCEE
Confidence                       1221  3899999999999987644 456777776654

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.59  E-value=1.7e-08  Score=82.15  Aligned_cols=38  Identities=26%  Similarity=0.420  Sum_probs=33.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG  101 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg  101 (189)
                      .+||+|||+|++||++|++|+++|++|+|+||. +..+|
T Consensus         5 ~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~-~~~~g   42 (336)
T d2bs2a2           5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLI-PVKRS   42 (336)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSS-CGGGS
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCCEEEEecC-CCCCC
Confidence            479999999999999999999999999999996 54443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.58  E-value=5.4e-07  Score=63.31  Aligned_cols=75  Identities=11%  Similarity=0.077  Sum_probs=54.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhh
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVL  141 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~  141 (189)
                      +.++|+|||||+.|+-+|..|++.|.+|+++++. +.+.-.            +          ++.+.+.+..+.    
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~-~~~l~~------------~----------d~~~~~~~~~~l----   73 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT-EPLKLI------------K----------DNETRAYVLDRM----   73 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS-CTTTTC------------C----------SHHHHHHHHHHH----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchhheEeecc-chhhcc------------c----------ccchhhhhhhhh----
Confidence            3578999999999999999999999999999986 432211            1          112333222221    


Q ss_pred             hcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe
Q 041557          142 LLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM  176 (189)
Q Consensus       142 ~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~  176 (189)
                                 ..  .+++++++++|+.++..+++
T Consensus        74 -----------~~--~gI~v~~~~~v~~i~~~~~~   95 (121)
T d1mo9a2          74 -----------KE--QGMEIISGSNVTRIEEDANG   95 (121)
T ss_dssp             -----------HH--TTCEEESSCEEEEEEECTTS
T ss_pred             -----------hc--cccEEEcCCEEEEEEecCCc
Confidence                       11  37999999999999987653

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.56  E-value=2.3e-08  Score=79.61  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=31.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|+||||||+||++|..|+++|++|+|||+.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~   34 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQ   34 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            358999999999999999999999999999996

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=2.1e-08  Score=74.73  Aligned_cols=38  Identities=24%  Similarity=0.407  Sum_probs=34.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG  104 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~  104 (189)
                      +||+|||||++||.||.++++.|.+|+|+|+.   +||++.
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~---~gg~~~   39 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER---FGGQIL   39 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS---TTGGGG
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe---cCCccc
Confidence            68999999999999999999999999999963   577764

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.54  E-value=2.2e-08  Score=81.60  Aligned_cols=41  Identities=27%  Similarity=0.393  Sum_probs=37.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ....||+|||+|++||++|+.|+++|.+|+|+||. +..||.
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~-~~~gG~   57 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKA-PFSGGN   57 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSS-SSSCTT
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC-CCCCCc
Confidence            44679999999999999999999999999999997 777765

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.53  E-value=2.6e-08  Score=76.73  Aligned_cols=40  Identities=25%  Similarity=0.389  Sum_probs=36.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      ..+|++|||||++|+.+|..+++.|.+|+|+|++  .+||.+
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~--~~GG~c   43 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ--ALGGTC   43 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS--CTTHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCCcc
Confidence            3689999999999999999999999999999985  688864

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=4e-08  Score=75.28  Aligned_cols=39  Identities=31%  Similarity=0.423  Sum_probs=35.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+|++|||||++|+++|..+++.|.+|+|+|++  ..||.+
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~--~~GG~c   41 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESH--KLGGTC   41 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--CTTHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEecc--CCCCcc
Confidence            589999999999999999999999999999984  677753

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=2.6e-07  Score=65.70  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++++|||||+.|+-+|..|++.|.+|+|+++.
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            368999999999999999999999999999874

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.50  E-value=3.7e-08  Score=78.06  Aligned_cols=38  Identities=26%  Similarity=0.409  Sum_probs=35.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      +|++|||||++|+.+|..+++.|.+|+|+|+.  .+||.+
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~--~~GGtc   39 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS--RLGGTC   39 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--STTHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC--CCCCeE
Confidence            68999999999999999999999999999985  689875

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.50  E-value=4.5e-08  Score=79.82  Aligned_cols=34  Identities=32%  Similarity=0.399  Sum_probs=32.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++||+|||+|++|+.+|..|++.|++|+|+|++
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG   36 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIG   36 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecC
Confidence            4679999999999999999999999999999987

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.47  E-value=4.4e-08  Score=79.19  Aligned_cols=37  Identities=32%  Similarity=0.315  Sum_probs=32.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHH-----HcCCeEEEEecCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLD-----KRGVKSNVFDMGNPDL   99 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~-----~~g~~v~v~e~~~~~~   99 (189)
                      ..+||+||||||+||++|..|+     ++|++|+|||+. +.+
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~-~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR-STK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS-SSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCC-CCC
Confidence            3589999999999999999996     579999999986 554

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.43  E-value=4.2e-07  Score=64.43  Aligned_cols=33  Identities=30%  Similarity=0.426  Sum_probs=31.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++++|||||+.|+-+|..|+++|++|+|+|+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~   64 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRG   64 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecc
Confidence            367999999999999999999999999999986

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=7.2e-08  Score=77.81  Aligned_cols=39  Identities=41%  Similarity=0.518  Sum_probs=33.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ..+||+|||+|++||++|+.+++.| +|+|+||. +..||.
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~-~~~gG~   44 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKG-PVTEGS   44 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTS-CEEEECSS-CTTC--
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCC-CEEEEECC-CCCCCc
Confidence            4689999999999999999999888 99999997 776665

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.41  E-value=1.3e-07  Score=74.90  Aligned_cols=43  Identities=26%  Similarity=0.205  Sum_probs=39.3

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      .+.++|++|||+|++|+.+|..|++.|.+|+|+|+. +.+||.+
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~-~~lGG~c   81 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRW-PFLGGSC   81 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSSCHH
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-Ccccccc
Confidence            446789999999999999999999999999999997 8899864

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=4.3e-08  Score=80.30  Aligned_cols=40  Identities=18%  Similarity=0.231  Sum_probs=35.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~  102 (189)
                      ++.||+|||+|++||++|++++++|.+|+|+||. +..+|.
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~-~~~gg~   45 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKV-FPTRSH   45 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSS-CGGGSG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCC-CCCCCc
Confidence            4689999999999999999999999999999997 665553

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.36  E-value=2e-07  Score=76.03  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=34.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH----cCCeEEEEecCCCCCCcC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDK----RGVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~----~g~~v~v~e~~~~~~gg~  102 (189)
                      ...||+|||+|++||++|+.|++    +|.+|+|+||. ...||.
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~-~~~gg~   63 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA-AVERSG   63 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS-CTTTCS
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC-CCCCCh
Confidence            35799999999999999999975    69999999997 665553

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.27  E-value=2.9e-07  Score=75.54  Aligned_cols=31  Identities=35%  Similarity=0.634  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+|||+|++|+.+|++|+++|++|+|+|++
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            6999999999999999999999999999996

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.26  E-value=2.5e-07  Score=76.17  Aligned_cols=34  Identities=29%  Similarity=0.560  Sum_probs=32.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+.||+|||+|++|+.+|.+|+++|++|+|+|++
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4578999999999999999999999999999986

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.25  E-value=5.9e-07  Score=68.84  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=30.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      +.+||+|||+||+|+++|.++++.|. +|+|+|+.
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~   36 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ   36 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESC
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEee
Confidence            46899999999999999999999886 68888874

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.24  E-value=3.4e-07  Score=71.08  Aligned_cols=34  Identities=18%  Similarity=0.234  Sum_probs=30.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      +.+||+|||+||+|+++|.++++.|. +|+|+|+.
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~   36 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQ   36 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESC
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEe
Confidence            47899999999999999999999985 59999985

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.6e-06  Score=66.71  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=30.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      .+.+++|||||++|+.+|..|+++|+  +|+++++.
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e   38 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSED   38 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            45679999999999999999999886  59999876

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.15  E-value=1.3e-07  Score=72.51  Aligned_cols=30  Identities=27%  Similarity=0.183  Sum_probs=26.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      +|+|||||++||++|+.|+++|++|+++|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            599999999999999999999987665554

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.13  E-value=6.1e-07  Score=69.78  Aligned_cols=37  Identities=27%  Similarity=0.397  Sum_probs=32.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC---CeEEEEecCCCCCCcCc
Q 041557           65 HVKIIGGGMAVLACALRLDKRG---VKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g---~~v~v~e~~~~~~gg~~  103 (189)
                      +|+|||+||+|++||.++++.|   ++|+|+|+.  .+||.+
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~--~~GG~c   42 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD--GIGGAA   42 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS--CTTHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC--CCCcee
Confidence            6999999999999999888766   579999984  788864

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.11  E-value=9.1e-07  Score=73.20  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=31.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|++|||+|.+|+.+|.+|++.|++|+|+|++
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            579999999999999999999999999999987

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.1e-06  Score=71.38  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=33.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~gg~  102 (189)
                      ..||+|||+|++||++|+.++++  |.+|+|+||. ...+|.
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~-~~~~g~   45 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKV-YPMRSH   45 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESS-CGGGSG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECC-CCCCCc
Confidence            57999999999999999999987  6789999997 555544

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.04  E-value=1.3e-05  Score=60.14  Aligned_cols=31  Identities=13%  Similarity=0.186  Sum_probs=28.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRG--VKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~   95 (189)
                      +|+|||||.+|+.+|..|++.+  .+|++||+.
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            5999999999999999999885  579999986

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.00  E-value=2.5e-06  Score=62.03  Aligned_cols=35  Identities=17%  Similarity=0.294  Sum_probs=31.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecCCCC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMGNPD   98 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~~~~   98 (189)
                      .++|+|||||++|+.+|..|.+.+.  +|+|+|+. +.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~-~~   38 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPN-TD   38 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSC-SC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECC-Cc
Confidence            4789999999999999999999884  79999986 54

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.90  E-value=3.1e-06  Score=70.78  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=31.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~   95 (189)
                      +.+|++|||+|.+|+.+|.+|++.| ++|+|+|++
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG   57 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKG   57 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESS
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4589999999999999999999998 799999998

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=1e-05  Score=54.36  Aligned_cols=34  Identities=35%  Similarity=0.496  Sum_probs=31.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+++|+|+|.|.+|+++|..|.++|.+|+++|..
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~   37 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTR   37 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCC
Confidence            4678999999999999999999999999999985

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.87  E-value=8.8e-06  Score=60.32  Aligned_cols=33  Identities=21%  Similarity=0.426  Sum_probs=29.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|+|||||++|+.+|..|++.|.+++|++..
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~   35 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVG   35 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEe
Confidence            345999999999999999999999988877764

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.85  E-value=4e-06  Score=69.76  Aligned_cols=34  Identities=29%  Similarity=0.434  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~   95 (189)
                      ..+|++|||+|.+|+.+|.+|++.+ ++|+|+|++
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG   50 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESG   50 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESS
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCC
Confidence            3589999999999999999999976 899999997

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.75  E-value=1.2e-05  Score=58.99  Aligned_cols=33  Identities=33%  Similarity=0.495  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +.+|+|||||++|+.+|..|++.|.+|+|++..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~   35 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVG   35 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEec
Confidence            568999999999999999999999998888775

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.75  E-value=5.4e-06  Score=68.27  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|++|||+|.+|+.+|.+|++. ++|+|+|++
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG   57 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERG   57 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSS
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecC
Confidence            458999999999999999999987 999999998

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.71  E-value=1.8e-05  Score=58.37  Aligned_cols=32  Identities=22%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++++|||+|..|+.+|..|+++|++|++|++.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~   33 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   33 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence            67999999999999999999999999999985

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.70  E-value=1.4e-05  Score=58.32  Aligned_cols=33  Identities=21%  Similarity=0.242  Sum_probs=31.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|||+|..|..+|..|.++|++|+|+|+.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~   34 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT   34 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            478999999999999999999999999999985

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.67  E-value=3.1e-05  Score=56.20  Aligned_cols=36  Identities=14%  Similarity=0.036  Sum_probs=30.8

Q ss_pred             CCCEEEE--CCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           63 NPHVKII--GGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        63 ~~~v~Ii--G~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      ...++|+  |||..|+.+|..|+++|.+|+|+++. +.+
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~-~~~   76 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGV-HLA   76 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESS-CTT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecC-Ccc
Confidence            4456666  99999999999999999999999986 443

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.56  E-value=3.1e-05  Score=56.09  Aligned_cols=30  Identities=27%  Similarity=0.351  Sum_probs=27.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+|||||++|+.+|..|++ +.+|+|+|+.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~   31 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKE   31 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecc
Confidence            69999999999999999965 7799999986

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00019  Score=54.19  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .-++|+|||+|..|...|..+++.|++|+++|..
T Consensus         3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~   36 (192)
T d1f0ya2           3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT   36 (192)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            3578999999999999999999999999999975

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00019  Score=51.76  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=31.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL   99 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~   99 (189)
                      +|+|||+|..|...|..|++.|++|+++++. +..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~-~~~   35 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRV-PQP   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSS-CCS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcC-HHH
Confidence            5999999999999999999999999999987 543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.17  E-value=0.00022  Score=50.09  Aligned_cols=32  Identities=19%  Similarity=0.188  Sum_probs=30.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      |+++|||.|..|..+|..|.+.|++|+++|.+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d   32 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   32 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence            57999999999999999999999999999975

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.12  E-value=0.00019  Score=53.81  Aligned_cols=33  Identities=15%  Similarity=0.230  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      -++|+|||+|..|...|..++.+|++|+++|..
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~   36 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDIN   36 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECC
Confidence            467999999999999999999999999999975

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.98  E-value=0.00042  Score=48.66  Aligned_cols=31  Identities=23%  Similarity=0.266  Sum_probs=29.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+|+|+|..|...|..|.+.|++|+++|++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d   32 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   32 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence            5899999999999999999999999999986

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.79  E-value=0.00085  Score=49.76  Aligned_cols=34  Identities=26%  Similarity=0.402  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +..+|+|||+|.+|+.++..+.+.|..|++||..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            4578999999999999999999999999999985

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.74  E-value=0.00056  Score=51.61  Aligned_cols=31  Identities=29%  Similarity=0.374  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..||.+|..|+++|++|+.||.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n   32 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence            4899999999999999999999999999974

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00064  Score=48.80  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=30.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEe
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFD   93 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e   93 (189)
                      ..+++|+|||||..|+..|..|.+.|.+|+|+.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            357899999999999999999999999999994

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.64  E-value=0.0013  Score=49.43  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +.-+|+|||+|.+|+.+|....+.|..|++||..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~   61 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVR   61 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEecc
Confidence            3468999999999999999999999999999975

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.64  E-value=0.0016  Score=46.46  Aligned_cols=33  Identities=21%  Similarity=0.152  Sum_probs=30.8

Q ss_pred             CCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      -++|.||| .|..|...|..|.++|++|.++|+.
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~   42 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRE   42 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTT
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccc
Confidence            46899999 6999999999999999999999986

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.61  E-value=0.0011  Score=48.03  Aligned_cols=31  Identities=19%  Similarity=0.171  Sum_probs=29.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|.+.|..|.++|++|++||+.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999999999999999999999985

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.59  E-value=0.00065  Score=51.03  Aligned_cols=32  Identities=25%  Similarity=0.306  Sum_probs=29.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|+|||+|.-|.++|..|++.|++|+++.++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            46999999999999999999999999999874

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.56  E-value=0.0012  Score=45.05  Aligned_cols=34  Identities=24%  Similarity=0.251  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+++|+|||+|..|...|..|.+.|.+|++++..
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5789999999999999999999999999999754

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.0039  Score=42.82  Aligned_cols=45  Identities=18%  Similarity=0.196  Sum_probs=37.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceee
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTR  106 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~  106 (189)
                      ...+|.|+|||--|..+|....+.|+++.++|.+.+.+..++...
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~va~~   54 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHR   54 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSE
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCchhhcCCe
Confidence            345799999999999999999999999999998745566665543

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.43  E-value=0.0019  Score=55.32  Aligned_cols=47  Identities=19%  Similarity=0.190  Sum_probs=43.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI  108 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~  108 (189)
                      +..+||+|+|-|+.=..+|..|++.|++|+-+|++ ...||.|++..+
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N-~yYGg~~aSl~~   50 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSR-SYYGGNWASFSF   50 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS-SSSCGGGCEECH
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCC-CcCCCcccceeH
Confidence            45789999999999999999999999999999998 999999887643

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.42  E-value=0.0014  Score=48.49  Aligned_cols=30  Identities=23%  Similarity=0.345  Sum_probs=28.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      +|+|||+|.-|.+.|..|+++|++|+|+.+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            489999999999999999999999999965

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.40  E-value=0.0021  Score=46.52  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=30.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...++|+|||||-+|+=+|..|.+.|. +|+++.+.
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            345689999999999999999999986 58888874

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.34  E-value=0.0019  Score=46.33  Aligned_cols=31  Identities=29%  Similarity=0.238  Sum_probs=28.6

Q ss_pred             CEEEE-CCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKII-GGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~Ii-G~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+|| |+|--|.+.|..|++.|++|+|+.|+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~   33 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            48999 67999999999999999999999985

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.19  E-value=0.0039  Score=45.10  Aligned_cols=36  Identities=19%  Similarity=0.273  Sum_probs=31.5

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      +.+.++|+|||+|-.|.++|+.|+..++ +++++|..
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~   40 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   40 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEec
Confidence            3457889999999999999999999986 79999975

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.06  E-value=0.0032  Score=45.28  Aligned_cols=34  Identities=18%  Similarity=0.388  Sum_probs=30.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      .+.+|.|||+|-.|.++|+.|+.+|.  .+.+||..
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            45689999999999999999999984  79999975

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.95  E-value=0.0046  Score=45.23  Aligned_cols=32  Identities=16%  Similarity=0.266  Sum_probs=30.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..|.|||-|..|..+|..|.++|++|.+||+.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~   34 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRT   34 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCC
Confidence            46999999999999999999999999999985

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.91  E-value=0.0039  Score=42.06  Aligned_cols=35  Identities=11%  Similarity=0.042  Sum_probs=30.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+++|+|||+|.+|+-.|..|++.+.++++.-+.
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            36799999999999999999999998887766653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0052  Score=44.78  Aligned_cols=34  Identities=18%  Similarity=0.160  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+++|+|+|+|-++.++++.|.+.|.+++|+.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            4688999999999999999999999999999874

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.86  E-value=0.0038  Score=45.12  Aligned_cols=32  Identities=34%  Similarity=0.352  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++|.|||-|..|...|..|.++|++|.+||+.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            35999999999999999999999999999985

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0062  Score=42.42  Aligned_cols=35  Identities=26%  Similarity=0.365  Sum_probs=32.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      -.+++|+|||+|-+.+-.|..|++...+|+++-+.
T Consensus        25 ~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~   59 (126)
T d1trba2          25 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRR   59 (126)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSS
T ss_pred             hCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeec
Confidence            46789999999999999999999999999999885

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.76  E-value=0.0075  Score=43.37  Aligned_cols=35  Identities=20%  Similarity=0.146  Sum_probs=31.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+...|+|+|+|+.|+.++..+...|.+|+++|..
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~   59 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS   59 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchH
Confidence            34567999999999999999999999999999975

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.69  E-value=0.0058  Score=43.86  Aligned_cols=32  Identities=31%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      ++|.|||+|-.|.++|+.|..+|.  .+.++|..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            679999999999999999999885  69999964

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.67  E-value=0.0081  Score=43.37  Aligned_cols=35  Identities=20%  Similarity=0.165  Sum_probs=31.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+...|+|+|+|..|+.++..+...|.+|++++.+
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~   60 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRS   60 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccccccccccc
Confidence            34677999999999999999888899999999986

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.66  E-value=0.0066  Score=44.19  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=29.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|-|||-|..|...|..|.++|++|.+||+.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            4899999999999999999999999999975

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.64  E-value=0.0049  Score=44.42  Aligned_cols=31  Identities=29%  Similarity=0.214  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||-|..|...|..|.++|++|.+||+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4899999999999999999999999999986

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.62  E-value=0.0043  Score=45.96  Aligned_cols=30  Identities=17%  Similarity=0.283  Sum_probs=26.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+|||.|-.||.+|..|+ +|++|+.||-+
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din   31 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDIL   31 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSC
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECC
Confidence            4899999999999999886 59999999964

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.60  E-value=0.0095  Score=42.69  Aligned_cols=35  Identities=17%  Similarity=0.130  Sum_probs=31.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+..+|+|+|+|+.|+.++..+...|.+|+++++.
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~   60 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID   60 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence            34567999999999999999999999999999975

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.59  E-value=0.0077  Score=42.85  Aligned_cols=32  Identities=22%  Similarity=0.329  Sum_probs=28.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ++|.|||+|-.|.++|+.|+.++. ++.+||..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~   34 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIV   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeec
Confidence            579999999999999999999986 79999964

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0099  Score=42.91  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=30.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+...|+|+|+|+.|+.++..+...|. +|+++|..
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~   60 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS   60 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence            345679999999999999999999998 69999975

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.008  Score=41.84  Aligned_cols=36  Identities=19%  Similarity=0.343  Sum_probs=32.7

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .-.+++|+|||+|-+.+-.|..|++...+|+|+-+.
T Consensus        27 ~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~   62 (126)
T d1fl2a2          27 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA   62 (126)
T ss_dssp             GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSS
T ss_pred             hcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecc
Confidence            346789999999999999999999999999999875

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.43  E-value=0.0093  Score=42.70  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=30.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      ..++|.|||+|-.|.++|+.|..+++  ++.++|..
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            35689999999999999999999986  69999964

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.37  E-value=0.01  Score=43.20  Aligned_cols=34  Identities=21%  Similarity=0.451  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      ++.+|.|||+|-.|.++|+.|..+|+  ++.+||..
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            46789999999999999999999997  79999964

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.29  E-value=0.011  Score=41.57  Aligned_cols=36  Identities=31%  Similarity=0.364  Sum_probs=33.1

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++++|+|||+|-+.+-.|..|++...+|+|+-+.
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~   66 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR   66 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSS
T ss_pred             HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEec
Confidence            456899999999999999999999999999999885

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.22  E-value=0.014  Score=41.45  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=29.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      .+|.|||+|-.|.++|+.|..+++  .+.++|..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~   35 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   35 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            479999999999999999999986  79999975

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.12  E-value=0.013  Score=42.07  Aligned_cols=31  Identities=29%  Similarity=0.382  Sum_probs=27.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +|.|||.|..|.+.|..|.+.|+  +|..||++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            59999999999999999999996  57778875

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.019  Score=40.54  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      -+++|+|.|..|..++..|.+.|++|+|+|..
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d   35 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEecc
Confidence            46999999999999999999999999999975

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.98  E-value=0.013  Score=42.47  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+++|+|||+|-++.++++.|.+.|. ++.|+.|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            46789999999999999999999996 69999875

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.94  E-value=0.017  Score=41.14  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=28.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      .+|+|||+|-.|.++|+.|..+|+  ++.++|..
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            469999999999999999999987  69999964

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.021  Score=41.02  Aligned_cols=35  Identities=14%  Similarity=0.086  Sum_probs=30.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+..+|+|+|+|..|+.++..+...|.++++++..
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~   63 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS   63 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhccc
Confidence            45678999999999999999888899999999865

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=0.0048  Score=44.04  Aligned_cols=29  Identities=28%  Similarity=0.347  Sum_probs=25.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeE
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKS   89 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v   89 (189)
                      ...++|+|||||..|+-+|..|.+.|.++
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            34689999999999999999999999754

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.02  Score=42.26  Aligned_cols=33  Identities=18%  Similarity=0.230  Sum_probs=30.1

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|+|| |..|..++..|.++|++|+++.|+
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~   36 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD   36 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcC
Confidence            467999995 999999999999999999999874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.85  E-value=0.018  Score=41.93  Aligned_cols=35  Identities=20%  Similarity=0.085  Sum_probs=30.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+..+|+|+|+|+.|+.++..+...|. +|+++|..
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~   62 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS   62 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccc
Confidence            346789999999999999999999997 79999875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.83  E-value=0.013  Score=37.66  Aligned_cols=32  Identities=13%  Similarity=0.101  Sum_probs=29.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++|.|||+|--|...+....+.|+++.++|-.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~   33 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLD   33 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTT
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            46999999999999999999999999999975

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.74  E-value=0.025  Score=40.96  Aligned_cols=34  Identities=24%  Similarity=0.466  Sum_probs=30.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      ...+|.|||+|-.|.++|+.|..+|+  .+.|+|..
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            44579999999999999999999986  69999964

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.65  E-value=0.017  Score=40.89  Aligned_cols=31  Identities=35%  Similarity=0.334  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|..|...|..|.++|+.|+++++.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~   32 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEG   32 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTT
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCc
Confidence            4899999999999999999999999999875

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.64  E-value=0.022  Score=40.23  Aligned_cols=31  Identities=23%  Similarity=0.424  Sum_probs=28.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +|+|||+|-.|.++|+.|+..+.  ++.++|..
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~   34 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccc
Confidence            58999999999999999999984  79999975

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.52  E-value=0.021  Score=43.17  Aligned_cols=33  Identities=15%  Similarity=0.085  Sum_probs=30.8

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++|+|+|| |..|-.++..|.+.|++|+++.+.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~   36 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRE   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECC
Confidence            578999997 999999999999999999999985

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.42  E-value=0.031  Score=40.01  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=28.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..+|.|||+|-.|.++|+.|.+.+. ++.|||..
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~   36 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV   36 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            3579999999999999999998886 68899975

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.34  E-value=0.001  Score=50.79  Aligned_cols=38  Identities=5%  Similarity=-0.021  Sum_probs=33.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE  100 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g  100 (189)
                      ..++|+|||+|..|+-+|..|++.|.+|+|+++. +.+.
T Consensus       179 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~-~~~~  216 (233)
T d1djqa3         179 AEAPRLIADATFTGHRVAREIEEANPQIAIPYKR-ETIA  216 (233)
T ss_dssp             GTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCC-CCCC
T ss_pred             cCCceeEecCchHHHHHHHHHHhcCCceEEEEec-cccc
Confidence            3577999999999999999999999999999986 5543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.30  E-value=0.033  Score=40.49  Aligned_cols=35  Identities=20%  Similarity=0.121  Sum_probs=30.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+...|+|+|+|+.|+.++..+...|. +|+++|..
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            346679999999999999999998896 68888875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.28  E-value=0.026  Score=40.03  Aligned_cols=34  Identities=21%  Similarity=0.189  Sum_probs=30.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +...|+|+|+|+.|+.++..+...|.+|++++..
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~   60 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG   60 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCC
Confidence            4567999999999999999999999999999864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.24  E-value=0.019  Score=42.43  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=31.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...++|+|||+|-+|+-+|..|++.+.+++++=+.
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            46899999999999999999999999988777653

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=93.86  E-value=0.028  Score=40.85  Aligned_cols=35  Identities=26%  Similarity=0.239  Sum_probs=31.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...++|+|+|+|-++.++++.|.+.+.+++|+.|.
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence            35678999999999999999999988899999885

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.85  E-value=0.033  Score=39.64  Aligned_cols=31  Identities=32%  Similarity=0.295  Sum_probs=27.6

Q ss_pred             CEEEECC-CHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           65 HVKIIGG-GMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~-G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +|.|||+ |..|.++|+.|+.++.  ++.++|..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            4899996 9999999999999995  79999864

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.85  E-value=0.032  Score=39.30  Aligned_cols=31  Identities=23%  Similarity=0.332  Sum_probs=27.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +|.|||+|-.|.++|+.|..+++  ++.++|..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            58999999999999999999985  69999964

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.83  E-value=0.042  Score=40.28  Aligned_cols=35  Identities=11%  Similarity=0.112  Sum_probs=31.8

Q ss_pred             CCCCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+++++|.| +|-.|..+|..|+++|.+|+++++.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~   56 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK   56 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccc
Confidence            3578899999 6999999999999999999999985

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.76  E-value=0.034  Score=39.39  Aligned_cols=31  Identities=13%  Similarity=0.122  Sum_probs=27.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +|.|||+|-.|.++|+.|+.+|.  .+.+||..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            58999999999999999999885  59999964

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.65  E-value=0.038  Score=42.13  Aligned_cols=33  Identities=21%  Similarity=0.124  Sum_probs=30.0

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|+|+|| |..|...+..|.++|++|+++.|.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~   36 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRP   36 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            456999997 999999999999999999999875

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.65  E-value=0.033  Score=40.45  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=29.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+++|+|||+|-++.++++.|.+.| +|.|+.|.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            5678999999999999999998877 89999764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=93.63  E-value=0.053  Score=39.47  Aligned_cols=34  Identities=18%  Similarity=0.276  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..++|+|||+|-+|.++++.|.+.|. +++|+.+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~   51 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR   51 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccc
Confidence            46789999999999999999999997 68898885

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.54  E-value=0.029  Score=39.84  Aligned_cols=31  Identities=19%  Similarity=0.396  Sum_probs=27.6

Q ss_pred             CEEEECC-CHHHHHHHHHHHHcCC--eEEEEecC
Q 041557           65 HVKIIGG-GMAVLACALRLDKRGV--KSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~-G~~Gl~~A~~l~~~g~--~v~v~e~~   95 (189)
                      +|+|||| |..|.++|+.|..+++  .+.++|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            5999996 9999999999999986  58889975

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.50  E-value=0.049  Score=39.57  Aligned_cols=36  Identities=14%  Similarity=0.258  Sum_probs=29.9

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMG   95 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~   95 (189)
                      ..+...|+|+|+|+.|+.++..+...|.+ |++.|..
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~   62 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN   62 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence            34567799999999999999999999974 6677764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=0.04  Score=40.13  Aligned_cols=35  Identities=17%  Similarity=0.212  Sum_probs=32.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+.|+|||=|..|-.+|..|+..|.+|+++|..
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~d   56 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEID   56 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             ecCCEEEEeccccccHHHHHHHHhCCCeeEeeecc
Confidence            45788999999999999999999999999999975

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.43  E-value=0.076  Score=36.74  Aligned_cols=34  Identities=18%  Similarity=0.471  Sum_probs=30.4

Q ss_pred             CCCCEEEECCC-----------HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGG-----------MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G-----------~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|           .++..++..|.+.|++++++.-+
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~N   47 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCN   47 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecC
Confidence            35789999999           58999999999999999999876

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.40  E-value=0.062  Score=39.72  Aligned_cols=35  Identities=26%  Similarity=0.215  Sum_probs=28.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+...|+|+|+|+.|+.++..+...|. +|+++|..
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            456789999999999999998877776 67788764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=93.33  E-value=0.053  Score=38.96  Aligned_cols=35  Identities=26%  Similarity=0.242  Sum_probs=30.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...++|+|||+|-.|..++..|..+|. +++|+-|.
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            356789999999999999999999998 58888774

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.30  E-value=0.049  Score=39.26  Aligned_cols=35  Identities=17%  Similarity=0.165  Sum_probs=28.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEE-EEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSN-VFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~-v~e~~   95 (189)
                      .+..+|+|+|+|..|+.++..+...|.+++ +.|..
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            456789999999999999999988888654 55653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.26  E-value=0.043  Score=41.80  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=30.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ...+|+|||.|-.|..+|..|++.|. +++|+|.+
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            35689999999999999999999998 68898864

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.073  Score=37.12  Aligned_cols=34  Identities=15%  Similarity=0.193  Sum_probs=30.5

Q ss_pred             CCCCEEEECCCH-----------HHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGM-----------AVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~-----------~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++|+|||+|+           ++..++..|.+.|++++++.-+
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~N   50 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSN   50 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCc
Confidence            457899999985           7899999999999999999876

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.98  E-value=0.055  Score=35.69  Aligned_cols=36  Identities=22%  Similarity=0.205  Sum_probs=31.5

Q ss_pred             CCCCCCEEEECCCHHHHHH-HHHHHHcCCeEEEEecC
Q 041557           60 ISSNPHVKIIGGGMAVLAC-ALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~-A~~l~~~g~~v~v~e~~   95 (189)
                      +...+++-+||-|=+|+++ |..|.++|++|+-.|..
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~   41 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA   41 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            3457889999988889888 99999999999999975

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.95  E-value=0.049  Score=38.59  Aligned_cols=31  Identities=19%  Similarity=0.128  Sum_probs=29.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.|||.|--|.+.|..|.+.|++++++++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcCh
Confidence            4899999999999999999999999999875

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.91  E-value=0.078  Score=38.41  Aligned_cols=35  Identities=14%  Similarity=0.197  Sum_probs=30.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+...|+|+|+|..|+.+...+...|. +|+++|..
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~   63 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLN   63 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCc
Confidence            445679999999999999999999994 79999975

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=92.81  E-value=0.05  Score=39.63  Aligned_cols=35  Identities=23%  Similarity=0.276  Sum_probs=32.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+.++|+|=|+.|-.+|..|+..|.+|+|.|.+
T Consensus        21 laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~D   55 (163)
T d1v8ba1          21 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEID   55 (163)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             ecCCEEEEecccccchhHHHHHHhCCCEEEEEecC
Confidence            45789999999999999999999999999999975

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.45  E-value=0.14  Score=38.21  Aligned_cols=36  Identities=25%  Similarity=0.267  Sum_probs=29.0

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHH--------------------HcCC-eEEEEecC
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLD--------------------KRGV-KSNVFDMG   95 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~--------------------~~g~-~v~v~e~~   95 (189)
                      ....++|+|||+|-.+|=+|..|.                    +.|. +|.++-|.
T Consensus        36 ~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RR   92 (216)
T d1lqta1          36 DLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR   92 (216)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred             cccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEEC
Confidence            345789999999999999999887                    4565 58888763

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.29  E-value=0.094  Score=37.82  Aligned_cols=36  Identities=8%  Similarity=0.119  Sum_probs=30.2

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..+...|+|+|+|+.|+.++..+...|. +|++.|..
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence            3456679999999999999999999996 68788764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=92.29  E-value=0.086  Score=41.25  Aligned_cols=34  Identities=18%  Similarity=0.209  Sum_probs=31.2

Q ss_pred             CCCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++++|+|.| +|..|..++..|.++|++|.++++.
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~   41 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLT   41 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            368899999 7899999999999999999999985

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=92.21  E-value=0.078  Score=37.27  Aligned_cols=31  Identities=32%  Similarity=0.433  Sum_probs=28.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRG-VKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~   95 (189)
                      +|.+||+|--|.+.|..|.+.| +++.+++++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~   33 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            4899999999999999988887 899999985

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.18  E-value=0.13  Score=38.95  Aligned_cols=44  Identities=30%  Similarity=0.283  Sum_probs=35.2

Q ss_pred             CCCCCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557           59 PISSNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMGNPDLEGRM  103 (189)
Q Consensus        59 ~~~~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~  103 (189)
                      |+..+|.++|.||+ =.|.++|..|++.|++|.+.++. .......
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~-~~~~~~~   47 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRG-SGAPKGL   47 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS-SCCCTTS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-cchhcCc
Confidence            44567888888876 58999999999999999999987 5544443

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.06  E-value=0.086  Score=37.25  Aligned_cols=30  Identities=20%  Similarity=0.406  Sum_probs=26.8

Q ss_pred             CEEEEC-CCHHHHHHHHHHHHcCC--eEEEEec
Q 041557           65 HVKIIG-GGMAVLACALRLDKRGV--KSNVFDM   94 (189)
Q Consensus        65 ~v~IiG-~G~~Gl~~A~~l~~~g~--~v~v~e~   94 (189)
                      +|.||| +|-.|.++|+.|..+++  .+.++|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            589999 69999999999999986  5888884

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.40  E-value=0.16  Score=39.88  Aligned_cols=34  Identities=9%  Similarity=0.053  Sum_probs=30.7

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++.|+|+|| |..|..++..|.++|++|.++-|+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~   36 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS   36 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECC
Confidence            3578999996 999999999999999999999774

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.27  E-value=0.16  Score=36.24  Aligned_cols=35  Identities=17%  Similarity=0.049  Sum_probs=28.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+...|+|+|+|..|+.++..+...|. .|++.|..
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~   66 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK   66 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence            346679999999999999998887885 56777764

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=91.16  E-value=0.13  Score=38.37  Aligned_cols=35  Identities=20%  Similarity=0.044  Sum_probs=32.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...++|+|-|-|-.|..+|..|.+.|.+|++.|.+
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            46789999999999999999999999999999863

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.82  E-value=0.23  Score=37.22  Aligned_cols=36  Identities=19%  Similarity=0.030  Sum_probs=30.1

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHc--------------------C-CeEEEEecC
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKR--------------------G-VKSNVFDMG   95 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~--------------------g-~~v~v~e~~   95 (189)
                      ....++|+|||+|-.+|=||..|.+.                    | .+|.++.+.
T Consensus        36 ~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RR   92 (225)
T d1cjca1          36 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRR   92 (225)
T ss_dssp             CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSS
T ss_pred             cccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEc
Confidence            34578999999999999999999883                    5 469999874

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=90.46  E-value=0.21  Score=35.52  Aligned_cols=36  Identities=14%  Similarity=0.228  Sum_probs=29.9

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           60 ISSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..+...|+|+|+|..|+.++..++..|. +|++.+.+
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~   62 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN   62 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCc
Confidence            3456679999999999999999999985 77777764

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.31  E-value=0.1  Score=35.51  Aligned_cols=30  Identities=30%  Similarity=0.378  Sum_probs=25.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++++|+|.|..|..++..|.  +..|.++|..
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d   30 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAED   30 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcc
Confidence            57999999999999999984  5567888875

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.28  E-value=0.22  Score=35.20  Aligned_cols=35  Identities=11%  Similarity=0.044  Sum_probs=28.9

Q ss_pred             CCCCCEEEEC-CCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           61 SSNPHVKIIG-GGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG-~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+..+|+|+| +|..|+.++..+...|. +|++++..
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccc
Confidence            3456799999 59999999998888885 78888865

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.98  E-value=0.37  Score=35.00  Aligned_cols=35  Identities=17%  Similarity=0.141  Sum_probs=32.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+.|.|||.|..|...|..|...|.+|..|++.
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~   74 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT   74 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccCceEEEeccccccccceeeeecccccccccccc
Confidence            46788999999999999999999999999999986

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.79  E-value=0.12  Score=38.79  Aligned_cols=31  Identities=19%  Similarity=0.192  Sum_probs=28.9

Q ss_pred             CEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|+|.|| |..|-.++..|..+|++|+.+++.
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~   34 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQ   34 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeech
Confidence            4899998 999999999999999999999985

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.79  E-value=0.19  Score=38.67  Aligned_cols=32  Identities=16%  Similarity=0.035  Sum_probs=29.2

Q ss_pred             CCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++|+|.|| |..|..++..|.++|++|..+++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~   33 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVAR   33 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            57999995 999999999999999999999975

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=89.67  E-value=0.21  Score=37.94  Aligned_cols=36  Identities=11%  Similarity=0.028  Sum_probs=30.5

Q ss_pred             CCCCEEEECC-C--HHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           62 SNPHVKIIGG-G--MAVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        62 ~~~~v~IiG~-G--~~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      +++.++|.|| |  =.|.+.|..|++.|++|++.+++ +.
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~-~~   42 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLN-ES   42 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESS-TT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCC-HH
Confidence            4678999995 3  37999999999999999999986 44

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.64  E-value=0.25  Score=37.00  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=29.2

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .|.|+|.|| |-.|.++|..|+++|++|.++++.
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~   35 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVV   35 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999997 568999999999999999999875

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.42  E-value=0.18  Score=35.50  Aligned_cols=31  Identities=26%  Similarity=0.401  Sum_probs=25.8

Q ss_pred             CEEEEC-CCHHHHHHHHHHHHc-C--CeEEEEecC
Q 041557           65 HVKIIG-GGMAVLACALRLDKR-G--VKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG-~G~~Gl~~A~~l~~~-g--~~v~v~e~~   95 (189)
                      +|.||| +|-.|.++|+.|..+ +  ..+.++|..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            589999 599999999998643 3  579999975

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.19  E-value=0.26  Score=37.40  Aligned_cols=32  Identities=31%  Similarity=0.300  Sum_probs=25.8

Q ss_pred             CCEEE-ECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKI-IGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~I-iG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      |+|+| .|| +=.|++.|..|++.|++|.+.++.
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~   34 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN   34 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            46644 465 458999999999999999999975

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.33  Score=34.37  Aligned_cols=35  Identities=20%  Similarity=0.061  Sum_probs=29.7

Q ss_pred             CCCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+..+|+|+|+ |..|+.+...+...|.+|+++...
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEEeccccccccccccccccCccccccccc
Confidence            35667999996 999999999888889999888764

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.97  E-value=0.15  Score=36.67  Aligned_cols=30  Identities=20%  Similarity=0.153  Sum_probs=26.2

Q ss_pred             CCEEEEC-CCHHHHHHHHHHHHcCCeEEEEe
Q 041557           64 PHVKIIG-GGMAVLACALRLDKRGVKSNVFD   93 (189)
Q Consensus        64 ~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e   93 (189)
                      ++|+|.| .|..|..++..|.++|++|.+++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            5799999 59999999999999998876654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.56  E-value=0.27  Score=38.07  Aligned_cols=31  Identities=23%  Similarity=0.238  Sum_probs=28.5

Q ss_pred             CCEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Q 041557           64 PHVKIIG-GGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        64 ~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      ++|+|.| .|..|..++..|.++|++|+.+++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            6799998 589999999999999999999986

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.54  E-value=0.31  Score=35.94  Aligned_cols=32  Identities=31%  Similarity=0.389  Sum_probs=26.7

Q ss_pred             CCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      |.++|-|| +-.|.+.|..|+++|++|++.++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~   34 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLR   34 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            45666675 668899999999999999999985

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.49  E-value=0.12  Score=35.50  Aligned_cols=39  Identities=26%  Similarity=0.235  Sum_probs=27.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH-cCCe-EEEEecCCCCCCcC
Q 041557           63 NPHVKIIGGGMAVLACALRLDK-RGVK-SNVFDMGNPDLEGR  102 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~-~g~~-v~v~e~~~~~~gg~  102 (189)
                      ..+|+|+|+|-+|.+.+.+|.+ .+++ |..||.+ +..-|+
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd-~~k~G~   43 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVD-PEKVGR   43 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESC-TTTTTC
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCc-hHhcCC
Confidence            3479999999999999887643 3666 4455765 444333

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.43  E-value=0.31  Score=38.21  Aligned_cols=34  Identities=29%  Similarity=0.341  Sum_probs=30.6

Q ss_pred             CCCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+-+|+|.| .|..|..++..|.++|++|+++|+.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~   48 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWK   48 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            455799999 7999999999999999999999874

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=88.36  E-value=0.2  Score=38.13  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=29.1

Q ss_pred             CCCCEEEECCCH-HHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGM-AVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~-~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.++|.||+- .|+++|..|++.|++|++.++.
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   42 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRS   42 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            466788888654 8999999999999999999986

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.06  E-value=0.35  Score=34.10  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=28.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      .+...|+|+|+|..|+.++..++..|- .|+++|..
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~   62 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN   62 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecch
Confidence            445679999999999999999988876 57777764

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=87.99  E-value=0.25  Score=37.80  Aligned_cols=34  Identities=21%  Similarity=-0.032  Sum_probs=29.3

Q ss_pred             CCCCCEEEECCC---HHHHHHHHHHHHcCCeEEEEec
Q 041557           61 SSNPHVKIIGGG---MAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        61 ~~~~~v~IiG~G---~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      ...|.++|.|++   =.|.++|..|++.|.+|++.++
T Consensus         6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~   42 (297)
T d1d7oa_           6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTW   42 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            367889999975   4899999999999999998864

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=87.98  E-value=0.28  Score=38.69  Aligned_cols=32  Identities=19%  Similarity=0.036  Sum_probs=28.4

Q ss_pred             CCEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      |.|+|.| +|..|..++..|.++|++|+.+++.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~   34 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRR   34 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            4577889 8999999999999999999999974

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=87.75  E-value=0.29  Score=36.82  Aligned_cols=35  Identities=9%  Similarity=0.044  Sum_probs=28.8

Q ss_pred             CCCCCEEEECC-CH--HHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGG-GM--AVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~-G~--~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|.++|.|+ |-  .|.++|..|++.|.+|++.++.
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            35778999995 43  6889999999999999998764

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.74  E-value=0.32  Score=36.72  Aligned_cols=34  Identities=18%  Similarity=0.170  Sum_probs=28.6

Q ss_pred             CCCCEEEECCC---HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGG---MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G---~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..|.++|.||+   =.|.+.|..|++.|++|++.++.
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~   43 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQA   43 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            46778999953   26999999999999999988875

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.45  E-value=0.3  Score=38.78  Aligned_cols=30  Identities=33%  Similarity=0.496  Sum_probs=27.7

Q ss_pred             CCEEEEC-CCHHHHHHHHHHHHcCCeEEEEe
Q 041557           64 PHVKIIG-GGMAVLACALRLDKRGVKSNVFD   93 (189)
Q Consensus        64 ~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e   93 (189)
                      .+|+|.| +|..|..++..|.++|++|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            5799998 59999999999999999999997

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=87.44  E-value=0.32  Score=36.49  Aligned_cols=36  Identities=11%  Similarity=0.127  Sum_probs=29.2

Q ss_pred             CCCCEEEECCCH---HHHHHHHHHHHcCCeEEEEecCCCC
Q 041557           62 SNPHVKIIGGGM---AVLACALRLDKRGVKSNVFDMGNPD   98 (189)
Q Consensus        62 ~~~~v~IiG~G~---~Gl~~A~~l~~~g~~v~v~e~~~~~   98 (189)
                      .++.++|.||+=   .|.++|..|++.|++|++.++. +.
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~-~~   42 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DK   42 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESS-TT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCC-HH
Confidence            467788888743   5788999999999999999885 44

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.42  E-value=0.34  Score=34.47  Aligned_cols=35  Identities=11%  Similarity=0.024  Sum_probs=29.6

Q ss_pred             CCCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+...|+|.|+ |..|+.+...+...|.+|+..+..
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~   61 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR   61 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEEeccccchhhhhhhhccccccccccccc
Confidence            45667999996 999999999888889999888864

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=87.38  E-value=0.46  Score=37.06  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=30.0

Q ss_pred             CCCCCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Q 041557           60 ISSNPHVKIIG-GGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        60 ~~~~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      .++.++|+|.| +|..|..++..|.++|++|..+.+
T Consensus         8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR   43 (342)
T d1y1pa1           8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR   43 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeC
Confidence            34578999999 589999999999999999987654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.36  E-value=0.24  Score=40.96  Aligned_cols=33  Identities=27%  Similarity=0.290  Sum_probs=30.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            4689999999999999999999998 79999964

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.18  E-value=0.36  Score=37.52  Aligned_cols=32  Identities=25%  Similarity=0.243  Sum_probs=29.2

Q ss_pred             CCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Q 041557           63 NPHVKIIG-GGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        63 ~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      .++|+|.| .|..|...+..|.++|++|+++|+
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            46899998 599999999999999999999985

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.17  E-value=0.33  Score=35.14  Aligned_cols=30  Identities=17%  Similarity=0.141  Sum_probs=25.7

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCeEEEE
Q 041557           63 NPHVKIIGG-GMAVLACALRLDKRGVKSNVF   92 (189)
Q Consensus        63 ~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~   92 (189)
                      .++|+|+|| |..|..++..|.++|+.+.|+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~   32 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVI   32 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEE
Confidence            478999999 999999999999999854444

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.14  E-value=0.38  Score=33.85  Aligned_cols=35  Identities=17%  Similarity=0.154  Sum_probs=28.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~   95 (189)
                      .+...|+|+|+|..|+.++..+...|.+ |++.+..
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~   62 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN   62 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence            4456799999999999999999999965 5556543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=87.14  E-value=0.33  Score=35.77  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.|.|||-|-.|..+|..|..-|.+|..||+.
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~   77 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPY   77 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cceeeeeeecccccccccccccccceeeeccCCc
Confidence            4678999999999999999999999999999985

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.14  E-value=0.39  Score=35.87  Aligned_cols=34  Identities=29%  Similarity=0.304  Sum_probs=28.2

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +.+.++|.||+ =.|.++|..|+++|++|.+.++.
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~   38 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLP   38 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45667888854 47889999999999999999985

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.00  E-value=0.78  Score=35.04  Aligned_cols=34  Identities=15%  Similarity=0.041  Sum_probs=28.8

Q ss_pred             CCCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|.++|.| +|-.|.++|..|++.|++|++.++.
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~   58 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRK   58 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            456677777 5778999999999999999999975

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=86.99  E-value=0.36  Score=36.71  Aligned_cols=34  Identities=32%  Similarity=0.453  Sum_probs=28.6

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++.++|.||+ =.|+++|..|++.|.+|.+.+++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN   38 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            45678888864 47899999999999999999975

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.89  E-value=0.46  Score=35.48  Aligned_cols=34  Identities=15%  Similarity=0.107  Sum_probs=29.5

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++|.++|.|| +=.|.++|..|++.|++|.+.+++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~   37 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARN   37 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4678999996 558999999999999999999985

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=86.86  E-value=0.45  Score=36.19  Aligned_cols=34  Identities=12%  Similarity=0.041  Sum_probs=29.5

Q ss_pred             CCCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +.|.++|.| ++=.|.++|..|+++|++|++.++.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~   39 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN   39 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            467899999 4557899999999999999999985

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.76  E-value=0.25  Score=37.80  Aligned_cols=35  Identities=20%  Similarity=0.127  Sum_probs=29.8

Q ss_pred             CCCCCEEEECCCH-HHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGM-AVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~-~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..++.++|.||+- .|.++|..|+++|++|++.++.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~   47 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARS   47 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4567888888654 7999999999999999999974

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.49  E-value=0.4  Score=36.32  Aligned_cols=34  Identities=18%  Similarity=0.127  Sum_probs=28.6

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++.++|.||+ -.|.+.|..|++.|++|++.++.
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   38 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            45678888864 47889999999999999999875

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.24  E-value=0.43  Score=35.93  Aligned_cols=34  Identities=21%  Similarity=0.132  Sum_probs=28.8

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++.++|.|| +-.|.+.|..|++.|++|++.++.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~   38 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIE   38 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4566788886 458999999999999999999975

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=86.21  E-value=0.4  Score=35.35  Aligned_cols=34  Identities=18%  Similarity=0.221  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+++|.|||-|-.|...|..|...|.+|..+|..
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence            5788999999999999999999999999999975

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.14  E-value=0.44  Score=35.88  Aligned_cols=34  Identities=18%  Similarity=0.098  Sum_probs=28.8

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.++|.||+ -.|.++|..|++.|++|++.++.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   38 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            35778888864 58899999999999999999874

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=85.94  E-value=0.47  Score=34.82  Aligned_cols=34  Identities=29%  Similarity=0.262  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.|.|||-|-.|-..|..|...|.+|..+++.
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~   81 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPY   81 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             eCceEEEeccccccccceeeeeccccceeeccCc
Confidence            5688999999999999999999999999999975

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.81  E-value=0.36  Score=36.99  Aligned_cols=35  Identities=20%  Similarity=0.173  Sum_probs=28.5

Q ss_pred             CCCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+|.++|.|| +=.|.+.|..|++.|.+|++.++.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~   38 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRS   38 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            35667777785 457889999999999999999874

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.71  E-value=0.49  Score=36.36  Aligned_cols=32  Identities=16%  Similarity=-0.043  Sum_probs=28.4

Q ss_pred             CCEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +.++|.| .|..|..++..|.++|++|+.+++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            4577777 6999999999999999999999974

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=85.65  E-value=0.43  Score=37.08  Aligned_cols=30  Identities=20%  Similarity=0.277  Sum_probs=27.5

Q ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Q 041557           65 HVKIIG-GGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        65 ~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      +|+|+| +|..|..++..|.++|++|+++|+
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            388998 599999999999999999999986

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=85.56  E-value=0.57  Score=34.78  Aligned_cols=30  Identities=20%  Similarity=0.082  Sum_probs=25.3

Q ss_pred             EEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           66 VKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        66 v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      |+|.|| +-.|+++|..|++.|++|++.++.
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~   34 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIR   34 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            566674 568999999999999999999875

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=85.55  E-value=0.35  Score=36.73  Aligned_cols=34  Identities=18%  Similarity=0.159  Sum_probs=26.4

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.++|.||+ =.|++.|..|++.|++|++.++.
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~   37 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFG   37 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCS
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            34555665644 47889999999999999999874

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=85.43  E-value=0.49  Score=36.01  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=27.8

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++.++|.|| +=.|.+.|..|++.|.+|++.++.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA   39 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4566777774 457899999999999999999974

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.22  E-value=0.62  Score=35.03  Aligned_cols=34  Identities=15%  Similarity=0.146  Sum_probs=28.8

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.++|.||+ -.|.+.|..|++.|++|++.++.
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~   40 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            46778888854 47889999999999999999975

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=85.06  E-value=0.52  Score=35.79  Aligned_cols=34  Identities=12%  Similarity=0.053  Sum_probs=29.0

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.++|.||+ =.|.++|..|++.|++|++.+++
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   41 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN   41 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            46778888875 47899999999999999999975

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.02  E-value=0.53  Score=35.57  Aligned_cols=33  Identities=24%  Similarity=0.225  Sum_probs=27.4

Q ss_pred             CCCEEEECCCH-HHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGGM-AVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~-~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+.++|.||+- .|...|..|+++|.+|.+.++.
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~   40 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN   40 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            45566667654 7999999999999999999985

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.01  E-value=0.71  Score=35.84  Aligned_cols=35  Identities=14%  Similarity=0.014  Sum_probs=29.3

Q ss_pred             CCCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+.++|.||+ -.|.++|..|++.|++|++.++.
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~   45 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRK   45 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            467778888854 47899999999999999999874

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.66  E-value=0.44  Score=36.10  Aligned_cols=34  Identities=18%  Similarity=0.148  Sum_probs=29.0

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++.++|.|| +=.|+++|..|++.|++|++.+++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADIN   38 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3567888886 567899999999999999999975

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=84.62  E-value=0.58  Score=35.13  Aligned_cols=34  Identities=15%  Similarity=0.103  Sum_probs=29.0

Q ss_pred             CCCCEEEECCCH-HHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGM-AVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~-~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.++|.||+- .|...|..|+++|++|.+.+++
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~   38 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDRE   38 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            456788888765 8999999999999999999875

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.56  E-value=0.57  Score=35.62  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=28.9

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.++|.||+ =.|.+.|..|++.|.+|++.++.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVL   38 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            45678888865 47889999999999999999974

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=84.55  E-value=0.66  Score=35.49  Aligned_cols=34  Identities=29%  Similarity=0.255  Sum_probs=29.3

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.++|-|| +-.|.++|..|++.|.+|.+.++.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKS   38 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4577888886 578999999999999999999985

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.53  E-value=0.65  Score=34.90  Aligned_cols=33  Identities=18%  Similarity=0.173  Sum_probs=26.5

Q ss_pred             CCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++.++|.| ++-.|.+.|..|+++|++|++.++.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~   39 (245)
T d2ag5a1           6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDIN   39 (245)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            34455555 6678999999999999999999975

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.23  E-value=0.71  Score=34.80  Aligned_cols=33  Identities=21%  Similarity=0.107  Sum_probs=27.2

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .|.++|.|| +=.|.++|..|++.|.+|.+.++.
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~   36 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWN   36 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            455677775 457999999999999999999874

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=84.08  E-value=0.69  Score=34.90  Aligned_cols=35  Identities=23%  Similarity=0.084  Sum_probs=30.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..+.+|+|.|+|-+|+..|..|.+.+. ++.++|+.
T Consensus        24 l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          24 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             hhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            456789999999999999999988886 58888874

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=84.06  E-value=0.7  Score=34.76  Aligned_cols=34  Identities=24%  Similarity=0.214  Sum_probs=28.5

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++.++|.||+ -.|.+.|..|++.|++|.+.++.
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~   38 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLV   38 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            45667888864 57899999999999999999975

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=84.02  E-value=0.62  Score=35.37  Aligned_cols=34  Identities=35%  Similarity=0.461  Sum_probs=28.1

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++.++|.||+ =.|.++|..|++.|.+|.+.++.
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   37 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS   37 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            35667777865 47889999999999999999974

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.88  E-value=0.61  Score=34.58  Aligned_cols=32  Identities=25%  Similarity=0.248  Sum_probs=27.6

Q ss_pred             CCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|+|.|| +-.|.+.|..|+++|++|+++++.
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~   35 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLS   35 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            35888985 567899999999999999999985

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=83.80  E-value=0.68  Score=33.53  Aligned_cols=34  Identities=26%  Similarity=0.190  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.+.|||.|-.|...|..|...|.+|..+++.
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~   76 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRH   76 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSS
T ss_pred             cccceeeccccccchhhhhhhhccCceEEEEeec
Confidence            5788999999999999999999999999999975

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.78  E-value=0.76  Score=34.73  Aligned_cols=34  Identities=15%  Similarity=0.147  Sum_probs=29.1

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..|.++|.|| +=.|.++|..|++.|.+|.+.++.
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD   39 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4677888886 567899999999999999999975

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.77  E-value=0.77  Score=34.61  Aligned_cols=34  Identities=15%  Similarity=0.037  Sum_probs=28.3

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.++|.|| +-.|.++|..|++.|++|.+.++.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~   39 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDIL   39 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4566777786 457889999999999999999975

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.74  E-value=0.71  Score=35.57  Aligned_cols=32  Identities=22%  Similarity=0.065  Sum_probs=28.1

Q ss_pred             CCE-EEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           64 PHV-KIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        64 ~~v-~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++| +|.| .|..|..++..|.++|++|+.+++.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            467 6877 5799999999999999999999984

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=83.64  E-value=0.87  Score=34.31  Aligned_cols=34  Identities=18%  Similarity=0.166  Sum_probs=28.4

Q ss_pred             CCCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.++|.| ++=.|.+.|..|++.|++|.+.++.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~   38 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLR   38 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            356677777 5567889999999999999999985

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=83.50  E-value=0.63  Score=35.14  Aligned_cols=34  Identities=15%  Similarity=-0.060  Sum_probs=27.7

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+|-++|.|| +=.|.++|..|++.|++|++.+++
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~   43 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRT   43 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            3555677786 457889999999999999999975

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=83.33  E-value=0.73  Score=34.86  Aligned_cols=35  Identities=26%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...++|+|-|-|-.|..+|..|.+.|.+|++.|-+
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~   71 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN   71 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEeeccc
Confidence            46789999999999999999999999999998753

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=83.10  E-value=0.35  Score=33.97  Aligned_cols=32  Identities=13%  Similarity=0.013  Sum_probs=26.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      .+..+|+.||.|..-  -|..|+++|++|+-+|-
T Consensus        19 ~~~~rvLd~GCG~G~--~a~~la~~G~~V~gvD~   50 (201)
T d1pjza_          19 VPGARVLVPLCGKSQ--DMSWLSGQGYHVVGAEL   50 (201)
T ss_dssp             CTTCEEEETTTCCSH--HHHHHHHHCCEEEEEEE
T ss_pred             CCCCEEEEecCcCCH--HHHHHHHcCCceEeecc
Confidence            456789999999885  45578899999999984

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.98  E-value=0.84  Score=34.61  Aligned_cols=33  Identities=18%  Similarity=0.076  Sum_probs=26.0

Q ss_pred             CCCEEEE--CCCHHHHHHHHHHHHc-CCeEEEEecC
Q 041557           63 NPHVKII--GGGMAVLACALRLDKR-GVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~Ii--G~G~~Gl~~A~~l~~~-g~~v~v~e~~   95 (189)
                      .++|+||  |++=.|+.+|..|++. |..|++.+++
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~   37 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD   37 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECC
Confidence            5789988  4455567788889876 8999999875

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=82.73  E-value=0.86  Score=34.32  Aligned_cols=30  Identities=30%  Similarity=0.336  Sum_probs=24.3

Q ss_pred             EEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           66 VKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        66 v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ++|-|| +=.|++.|..|++.|++|.+.++.
T Consensus         5 alITGas~GIG~aia~~la~~Ga~V~i~~r~   35 (257)
T d2rhca1           5 ALVTGATSGIGLEIARRLGKEGLRVFVCARG   35 (257)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            355564 347999999999999999999875

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.50  E-value=0.34  Score=34.07  Aligned_cols=31  Identities=16%  Similarity=0.250  Sum_probs=24.4

Q ss_pred             CCEEEECC-CHHHHHHHHHHHHcCC-------eEEEEec
Q 041557           64 PHVKIIGG-GMAVLACALRLDKRGV-------KSNVFDM   94 (189)
Q Consensus        64 ~~v~IiG~-G~~Gl~~A~~l~~~g~-------~v~v~e~   94 (189)
                      -+|.|||| |..|.++|+.|+..+.       ...++|.
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~   42 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDI   42 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECC
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecC
Confidence            37999995 9999999999987653       3566664

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.42  E-value=0.91  Score=32.79  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.|.|||-|..|...|..|...|.+|..+|+.
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~   76 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE   76 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cceEEEEeecccchhhhhhhcccccceEeecccc
Confidence            5678999999999999999999999999999975

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.15  E-value=0.56  Score=35.66  Aligned_cols=34  Identities=15%  Similarity=0.039  Sum_probs=27.8

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++.++|.||+ -.|.++|..|++.|.+|++.++.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~   41 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN   41 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            45677777754 36889999999999999999875

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.12  E-value=0.49  Score=32.96  Aligned_cols=30  Identities=27%  Similarity=0.215  Sum_probs=25.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.+||-|.-|..+|..|.+.|+.+ ++.+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~   31 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRT   31 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCC
Confidence            6999999999999999999999866 55543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=82.08  E-value=0.61  Score=35.06  Aligned_cols=33  Identities=21%  Similarity=0.035  Sum_probs=26.5

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+.++|-|| +=.|.++|..|++.|++|++.++.
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~   37 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATS   37 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            455666674 446889999999999999999985

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.95  E-value=0.89  Score=35.08  Aligned_cols=32  Identities=22%  Similarity=-0.007  Sum_probs=28.8

Q ss_pred             CCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Q 041557           63 NPHVKIIG-GGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        63 ~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      .+.|+|.| .|..|..++..|.++|++|+.+|+
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            45688888 599999999999999999999986

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.77  E-value=0.7  Score=35.09  Aligned_cols=34  Identities=24%  Similarity=0.201  Sum_probs=28.2

Q ss_pred             CCCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIG-GGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++.++|.| ++-.|.+.|..|+++|++|++.++.
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~   51 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN   51 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            567788888 4566889999999999999998864

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.75  E-value=1  Score=33.99  Aligned_cols=34  Identities=21%  Similarity=0.119  Sum_probs=28.3

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +++.++|.|| +=.|+++|..|++.|++|.+.++.
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~   43 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCART   43 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4667888885 456899999999999999999874

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.44  E-value=0.6  Score=35.69  Aligned_cols=33  Identities=18%  Similarity=0.184  Sum_probs=26.9

Q ss_pred             CCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .+.++|.||+ =.|.++|..|++.|.+|++.++.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   37 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRN   37 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            5667777753 46889999999999999999874

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=81.30  E-value=0.6  Score=35.36  Aligned_cols=34  Identities=21%  Similarity=0.179  Sum_probs=27.2

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++.++|.||+ =.|.+.|..|++.|.+|.+.++.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~   39 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDIN   39 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            35566777753 47889999999999999999975

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.17  E-value=0.98  Score=32.58  Aligned_cols=35  Identities=20%  Similarity=0.125  Sum_probs=32.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557           61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ...+.+.|||.|..|...|..|...|.+|..+++.
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~   76 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY   76 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             ccceeeeeccccchhHHHHHHhhhccceEEeecCC
Confidence            35788999999999999999999999999999975

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=81.13  E-value=0.97  Score=33.95  Aligned_cols=29  Identities=17%  Similarity=0.110  Sum_probs=24.2

Q ss_pred             EEEE-C-CCHHHHHHHHHHHHcCCeEEEEec
Q 041557           66 VKII-G-GGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        66 v~Ii-G-~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      |+|| | ++-.|.++|..|++.|.+|+|.++
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~   34 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYH   34 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            6676 4 457899999999999999998765

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=81.09  E-value=0.43  Score=33.50  Aligned_cols=23  Identities=17%  Similarity=0.316  Sum_probs=20.7

Q ss_pred             CEEEECC-CHHHHHHHHHHHHcCC
Q 041557           65 HVKIIGG-GMAVLACALRLDKRGV   87 (189)
Q Consensus        65 ~v~IiG~-G~~Gl~~A~~l~~~g~   87 (189)
                      +|.|||| |..|.++|+.|+...+
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhccc
Confidence            7999996 9999999999998763

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=81.07  E-value=0.88  Score=34.51  Aligned_cols=30  Identities=27%  Similarity=0.222  Sum_probs=27.0

Q ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Q 041557           65 HVKIIG-GGMAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        65 ~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      +|+|.| .|..|..+...|.++|++|+.+|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            578887 699999999999999999999985

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=80.84  E-value=0.94  Score=34.20  Aligned_cols=34  Identities=24%  Similarity=0.114  Sum_probs=28.0

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      ..+.|+|.||. =.|..+|..|+++|.+|+++.+.
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~   38 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDR   38 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            46778888865 47999999999999998888654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=80.44  E-value=0.78  Score=34.59  Aligned_cols=33  Identities=21%  Similarity=0.141  Sum_probs=26.3

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHcCCeEEEEec
Q 041557           62 SNPHVKIIGGG-MAVLACALRLDKRGVKSNVFDM   94 (189)
Q Consensus        62 ~~~~v~IiG~G-~~Gl~~A~~l~~~g~~v~v~e~   94 (189)
                      ..|.++|.||+ -.|...|..|++.|++|+|..+
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~   38 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYG   38 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence            45667777754 4789999999999999998654

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.30  E-value=0.69  Score=39.15  Aligned_cols=33  Identities=18%  Similarity=0.173  Sum_probs=29.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557           63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~   95 (189)
                      ..+|+|||+|..|..+|..|+..|. +++|+|.+
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d   58 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGN   58 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            4579999999999999999999997 69999864

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.11  E-value=1.3  Score=28.23  Aligned_cols=31  Identities=16%  Similarity=0.156  Sum_probs=25.6

Q ss_pred             CEEEECCCHHHHHH-HHHHHHcCCeEEEEecC
Q 041557           65 HVKIIGGGMAVLAC-ALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        65 ~v~IiG~G~~Gl~~-A~~l~~~g~~v~v~e~~   95 (189)
                      +|=+||-|=+||++ |..|.++|+.|.-.|..
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~   34 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIE   34 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            57788877777744 88999999999999975

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=80.10  E-value=0.73  Score=34.75  Aligned_cols=34  Identities=24%  Similarity=0.152  Sum_probs=27.2

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      .++.++|.|| +=.|.+.|..|++.|.+|++.++.
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   39 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH   39 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3556677774 447889999999999999999975

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.01  E-value=1.2  Score=33.59  Aligned_cols=33  Identities=18%  Similarity=0.136  Sum_probs=26.6

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557           63 NPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG   95 (189)
Q Consensus        63 ~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~   95 (189)
                      +|.++|.|| +-.|.++|..|++.|.+|.+.++.
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (264)
T d1spxa_           5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRH   38 (264)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            455566664 568899999999999999999874