Citrus Sinensis ID: 041562

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650---
Protein Sequence
MCCFTQQRKTMPKLKLLHIIIIILSCFSSFCQACNQIDQDSLLSLGFNISSPGLNWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCSVQPRPIVLPDS
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccEEccccccEEEEEccccccEEEccccccccccccEEEccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEcccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEcccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccHHHHccccccEEEccccccEEEcccccccccccccEEEccccEEEEEccccccccccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccccEEEccccccccccccccccccccccccccEEEcccccccccccHHHHcccccccEEccccccccccccccccccccccEEcccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHEEEccccccccccHHHHHcccccccccccccccccccHHHHcccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccEEEEEEccccEEEEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccEEEEEccccccccccHHHHHHccccEEEEEccccccccccccHHHccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEcccccEcccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccccHHHccccccEEEEEEcccccccccccccccccccccccEEEEEccccccccccHHHHccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHHccHHHHHHHHccccccccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEEEEEccEEEccHHHHHcccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
mccftqqrktmpklKLLHIIIIILSCFSSFCQACNQIDQdsllslgfnisspglnwssstdcclwegikcdangrvshlwlpwkgltgtislsignlthlSHLNlshnrlsgefpsslssnYIKIIDlssnhfqgkipsTIFRLTQNLitfnvsnnsftgLISWSAWVDSFCsirhldlsnnrftgpvplglgscsrlkTFRAGFNyltgslpddiyTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNsltgliprdigkltnLESLVLHnnslsgslpsslknCINLTLLnlqsnffegdisvfnFSTLLKLRVLDlgsnlftgslpitlnsckSLTAVNLARNqlegqispgiVALKSLSFLSlsnnsltnITGAIRILMGCKNLKVLiiplnfmdetmpdndrltsangfknlqvlglaecklkgqvpswigklKKLQVLDLSFnqltgsvprflgnmsslfhidfsnnlisgefpkefcrlpaltpeqdknkaNESYLEFSLfkgsnnfiGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDlshnnfsgnipdqisqltnlermdlsknhlsgeipvSLKRLHFLSAFNVaennlrgsipsggqfdtfpsssfrgnpdlcgAIVQrscsvqprpivlpds
Flexible Loop (DISEMBL)
mccftqqrktmpklKLLHIIIIILSCFSSFCQACNQIDQDSLLSLGFNISSPGLNWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVqrscsvqprpivlpds
Low Complexity Region (SEG)
MCCFTQQRKTMPklkllhiiiiilSCFSSFCQACNQIDQDSLLSLGFNISSPGLNWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGnlthlshlnlshnrlsGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNslsgslpsslKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVAlkslsflslsnnslTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTasaavsllrlllhmldlsHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCSVQPRPIVLPDS
Disordered region (IsUnstruct)
*********TMPKLKLLHIIIIILSCFSSFCQACNQIDQDSLLSLGFNISSPGLNWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPAL***********SYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLE***L**NHLSGEIPVSLKRLHFLSAFNVAENNLR*********************DLCGAIVQRSC************
Disordered Region (DISOPRED)
************KLKLLHIIIIILSCFSSFCQACNQIDQDSLLSLGFNIS*****WS**TDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDK*KANESYLEFSLFKGSNNFIGEYKKILTF***************LLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAI*****************
Disordered Region (DISEMBL)
********KTMPKLKLLHIIIIILSCFSSFCQACNQIDQDSLLSLGFNISSPGLNWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCSVQPRPIVLPDS
Disordered Region (DISPRO)
*CCFTQQRKTMPKLKLLHIIIIILSCFSSFCQACNQIDQDSLLSLGFNISSPGLNWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQR**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCCFTQQRKTMPKLKLLHIIIIILSCFSSFCQACNQIDQDSLLSLGFNISSPGLNWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCSVQPRPIVLPDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	653	2.2.26 [Sep-21-2011]
Q9C7S5	1095	Tyrosine-sulfated glycope	yes	no	0.975	0.581	0.443	1e-150
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.946	0.847	0.446	1e-143
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.928	0.584	0.402	1e-105
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.920	0.596	0.392	5e-98
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.938	0.600	0.385	2e-97
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.848	0.443	0.321	5e-66
Q9FL28	1173	LRR receptor-like serine/	no	no	0.736	0.410	0.335	4e-64
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.940	0.587	0.305	1e-62
O49318	1124	Probable leucine-rich rep	no	no	0.820	0.476	0.319	4e-60
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.830	0.491	0.320	7e-60

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  533 bits (1373), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 304/686 (44%), Positives = 418/686 (60%), Gaps = 49/686 (7%)

Query: 4   FTQQRKTMPKLKLLHIIIIILSC---FSSFCQA-CNQIDQDSLLSLGFNISSP--GLNWS 57
           F +Q K +    +L +++ +LS    F +  +A CN  D+DSLL    N+SSP   L+W+
Sbjct: 14  FVRQVKPLSPHMVLFVLLYVLSISVFFLTVSEAVCNLQDRDSLLWFSGNVSSPVSPLHWN 73

Query: 58  SSTDCCLWEGIKCDA--NGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFP 115
           SS DCC WEGI CD     RV+ + L  +GL+G +  S+ +L  LS L+LSHNRLSG  P
Sbjct: 74  SSIDCCSWEGISCDKSPENRVTSIILSSRGLSGNLPSSVLDLQRLSRLDLSHNRLSGPLP 133

Query: 116 SSLSS--NYIKIIDLSSNHFQGKIP--------------------------------STI 141
               S  + + ++DLS N F+G++P                                S  
Sbjct: 134 PGFLSALDQLLVLDLSYNSFKGELPLQQSFGNGSNGIFPIQTVDLSSNLLEGEILSSSVF 193

Query: 142 FRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTF 201
            +   NL +FNVSNNSFTG I  S    +   +  LD S N F+G +   L  CSRL   
Sbjct: 194 LQGAFNLTSFNVSNNSFTGSIP-SFMCTASPQLTKLDFSYNDFSGDLSQELSRCSRLSVL 252

Query: 202 RAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIP 261
           RAGFN L+G +P +IY    LEQL L  N +SG I NGI  LT L +LELYSN + G IP
Sbjct: 253 RAGFNNLSGEIPKEIYNLPELEQLFLPVNRLSGKIDNGITRLTKLTLLELYSNHIEGEIP 312

Query: 262 RDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRV 321
           +DIGKL+ L SL LH N+L GS+P SL NC  L  LNL+ N   G +S  +FS    L +
Sbjct: 313 KDIGKLSKLSSLQLHVNNLMGSIPVSLANCTKLVKLNLRVNQLGGTLSAIDFSRFQSLSI 372

Query: 322 LDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNIT 381
           LDLG+N FTG  P T+ SCK +TA+  A N+L GQISP ++ L+SLSF + S+N +TN+T
Sbjct: 373 LDLGNNSFTGEFPSTVYSCKMMTAMRFAGNKLTGQISPQVLELESLSFFTFSDNKMTNLT 432

Query: 382 GAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIG 441
           GA+ IL GCK L  LI+  NF DET+P N     ++GF +LQ+ G+  C+L G++P+W+ 
Sbjct: 433 GALSILQGCKKLSTLIMAKNFYDETVPSNKDFLRSDGFPSLQIFGIGACRLTGEIPAWLI 492

Query: 442 KLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKN 501
           KL++++V+DLS N+  G++P +LG +  LF++D S+N ++GE PKE  +L AL  ++  +
Sbjct: 493 KLQRVEVMDLSMNRFVGTIPGWLGTLPDLFYLDLSDNFLTGELPKELFQLRALMSQKAYD 552

Query: 502 KANESYLEFSLFKGSNNFI--GEYKKILTFHEQYTWKT---TASAAVSLLRL-LLHMLDL 555
               +YLE  +F   NN     +Y ++ +       K    T +  V + +L +LH+L+L
Sbjct: 553 ATERNYLELPVFVNPNNVTTNQQYNQLSSLPPTIYIKRNNLTGTIPVEVGQLKVLHILEL 612

Query: 556 SHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG 615
             NNFSG+IPD++S LTNLER+DLS N+LSG IP SL  LHFLS FNVA N L G IP+G
Sbjct: 613 LGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLTGLHFLSYFNVANNTLSGPIPTG 672

Query: 616 GQFDTFPSSSFRGNPDLCGAIVQRSC 641
            QFDTFP ++F GNP LCG ++  SC
Sbjct: 673 TQFDTFPKANFEGNPLLCGGVLLTSC 698

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  510 bits (1313), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 298/667 (44%), Positives = 412/667 (61%), Gaps = 49/667 (7%)

Query: 20  IIIILSCFSSFCQA-CNQIDQDSLLSLGFNISSP--GLNWSSSTDCCLWEGIKCD--ANG 74
           I+ + + F +  +A CN  D++SL+    N+SS    LNW+ S DCC WEGI CD  ++ 
Sbjct: 31  ILFLSALFLTLSEAVCNLQDRESLIWFSGNVSSSVSPLNWNLSIDCCSWEGITCDDSSDS 90

Query: 75  RVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS--NYIKIIDLSSNH 132
            V+ + LP +GL+GT++ S+ N+  LS L+LS+NRLSG  P    S  + + I++LS N 
Sbjct: 91  HVTVISLPSRGLSGTLASSVQNIHRLSRLDLSYNRLSGPLPPGFFSTLDQLMILNLSYNS 150

Query: 133 FQGKIP--------------------------------STIFRLTQNLITFNVSNNSFTG 160
           F G++P                                S   + T NLI+FNVSNNSFTG
Sbjct: 151 FNGELPLEQAFGNESNRFFSIQTLDLSSNLLEGEILRSSVYLQGTINLISFNVSNNSFTG 210

Query: 161 LISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTAT 220
            I  S    S   +  LD S N F+G +   LG C RL   +AGFN L+G +P +IY  +
Sbjct: 211 PIP-SFMCRSSPQLSKLDFSYNDFSGHISQELGRCLRLTVLQAGFNNLSGVIPSEIYNLS 269

Query: 221 SLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSL 280
            LEQL L  N ++G I N I  L  L  L LYSN L G IP DIG L++L SL LH N++
Sbjct: 270 ELEQLFLPANQLTGKIDNNITRLRKLTSLALYSNHLEGEIPMDIGNLSSLRSLQLHINNI 329

Query: 281 SGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSC 340
           +G++P SL NC  L  LNL+ N   G ++   FS L  L+VLDLG+N FTG+LP  + SC
Sbjct: 330 NGTVPLSLANCTKLVKLNLRVNQLGGGLTELEFSQLQSLKVLDLGNNSFTGALPDKIFSC 389

Query: 341 KSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPL 400
           KSLTA+  A N+L G+ISP ++ L+SLSF+ LS+N LTNITGA+ IL GC+ L  LI+  
Sbjct: 390 KSLTAIRFAGNKLTGEISPQVLELESLSFMGLSDNKLTNITGALSILQGCRKLSTLILAK 449

Query: 401 NFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSV 460
           NF DET+P  +   S +GF  L++ G+  C+L+G++P+W+  L K++V+DLS N+  GS+
Sbjct: 450 NFYDETVPSKEDFLSPDGFPKLRIFGVGACRLRGEIPAWLINLNKVEVMDLSMNRFVGSI 509

Query: 461 PRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFI 520
           P +LG +  LF++D S+NL++GE PKE  +L AL  ++       +YLE  +F   NN  
Sbjct: 510 PGWLGTLPDLFYLDLSDNLLTGELPKELFQLRALMSQK---ITENNYLELPIFLNPNNVT 566

Query: 521 --GEYKKILTFHEQYTWKT---TASAAVSLLRL-LLHMLDLSHNNFSGNIPDQISQLTNL 574
              +Y K+ +F      +    T S  V + +L +LH+L+L  NN SG+IPD++S LTNL
Sbjct: 567 TNQQYNKLYSFPPTIYIRRNNLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELSNLTNL 626

Query: 575 ERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCG 634
           ER+DLS N+LSG IP SL  L+FLS FNVA N+L G IPS GQFDTFP ++F GNP LCG
Sbjct: 627 ERLDLSNNNLSGSIPWSLTNLNFLSYFNVANNSLEGPIPSEGQFDTFPKANFEGNPLLCG 686

Query: 635 AIVQRSC 641
            ++  SC
Sbjct: 687 GVLLTSC 693

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score =  384 bits (985), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 265/659 (40%), Positives = 367/659 (55%), Gaps = 53/659 (8%)

Query: 19  IIIIILSCF--SSFCQACNQIDQDSLLSLGFNISSPGL--NWSSSTDCCLWEGIKC---D 71
           +II++L  F  SS  Q C+  D  +L  L   + +  +  +W + + CC W+G+ C   D
Sbjct: 2   VIILLLVFFVGSSVSQPCHPNDLSALRELAGALKNKSVTESWLNGSRCCEWDGVFCEGSD 61

Query: 72  ANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSS 130
            +GRV+ L LP KGL G IS S+G LT L  L+LS N+L GE P+ +S    ++++DLS 
Sbjct: 62  VSGRVTKLVLPEKGLEGVISKSLGELTELRVLDLSRNQLKGEVPAEISKLEQLQVLDLSH 121

Query: 131 NHFQGKIPSTI--FRLTQ--------------------NLITFNVSNNSFTGLISWSAWV 168
           N   G +   +   +L Q                     L+  NVSNN F G I      
Sbjct: 122 NLLSGSVLGVVSGLKLIQSLNISSNSLSGKLSDVGVFPGLVMLNVSNNLFEGEIH-PELC 180

Query: 169 DSFCSIRHLDLSNNRFTGPVPLGLGSCSR-LKTFRAGFNYLTGSLPDDIYTATSLEQLSL 227
            S   I+ LDLS NR  G +  GL +CS+ ++      N LTG LPD +Y+   LEQLSL
Sbjct: 181 SSSGGIQVLDLSMNRLVGNLD-GLYNCSKSIQQLHIDSNRLTGQLPDYLYSIRELEQLSL 239

Query: 228 SFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSS 287
           S N++SG +   + NL+ L+ L +  N  + +IP   G LT LE L + +N  SG  P S
Sbjct: 240 SGNYLSGELSKNLSNLSGLKSLLISENRFSDVIPDVFGNLTQLEHLDVSSNKFSGRFPPS 299

Query: 288 LKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVN 347
           L  C  L +L+L++N   G I++ NF+    L VLDL SN F+G LP +L  C  +  ++
Sbjct: 300 LSQCSKLRVLDLRNNSLSGSINL-NFTGFTDLCVLDLASNHFSGPLPDSLGHCPKMKILS 358

Query: 348 LARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETM 407
           LA+N+  G+I      L+SL FLSLSNNS  + +  + +L  C+NL  LI+  NF+ E +
Sbjct: 359 LAKNEFRGKIPDTFKNLQSLLFLSLSNNSFVDFSETMNVLQHCRNLSTLILSKNFIGEEI 418

Query: 408 PDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNM 467
           P+N       GF NL +L L  C L+GQ+PSW+   KKL+VLDLS+N   G++P ++G M
Sbjct: 419 PNN-----VTGFDNLAILALGNCGLRGQIPSWLLNCKKLEVLDLSWNHFYGTIPHWIGKM 473

Query: 468 SSLFHIDFSNNLISGEFP------KEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIG 521
            SLF+IDFSNN ++G  P      K   RL     +   +     Y++ +  K SN    
Sbjct: 474 ESLFYIDFSNNTLTGAIPVAITELKNLIRLNGTASQMTDSSGIPLYVKRN--KSSNGL-- 529

Query: 522 EYKKILTFHEQYTW---KTTASAAVSLLRLL-LHMLDLSHNNFSGNIPDQISQLTNLERM 577
            Y ++  F         +   +    + RL  LHMLDLS NNF+G IPD IS L NLE +
Sbjct: 530 PYNQVSRFPPSIYLNNNRLNGTILPEIGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVL 589

Query: 578 DLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAI 636
           DLS NHL G IP+S + L FLS F+VA N L G+IPSGGQF +FP SSF GN  LC AI
Sbjct: 590 DLSYNHLYGSIPLSFQSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSSFEGNLGLCRAI 648

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score =  358 bits (920), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 251/640 (39%), Positives = 356/640 (55%), Gaps = 39/640 (6%)

Query: 19  IIIIILS---CF-----SSFCQACNQIDQDSLLSLGFNISSPGLNW---SSSTDCCLWEG 67
           +I+I L+   CF     S     C+  D ++L     ++      W   SSSTDCC W G
Sbjct: 8   VIVIFLTELLCFFYSSESQTTSRCHPHDLEALRDFIAHLEPKPDGWINSSSSTDCCNWTG 67

Query: 68  IKCDAN--GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIK 124
           I C++N  GRV  L L  K L+G +S S+G L  +  LNLS N +    P S+ +   ++
Sbjct: 68  ITCNSNNTGRVIRLELGNKKLSGKLSESLGKLDEIRVLNLSRNFIKDSIPLSIFNLKNLQ 127

Query: 125 IIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRF 184
            +DLSSN   G IP++I      L +F++S+N F G +  S    +   IR + L+ N F
Sbjct: 128 TLDLSSNDLSGGIPTSIN--LPALQSFDLSSNKFNGSLP-SHICHNSTQIRVVKLAVNYF 184

Query: 185 TGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLT 244
            G    G G C  L+    G N LTG++P+D++    L  L +  N +SGS+   I NL+
Sbjct: 185 AGNFTSGFGKCVLLEHLCLGMNDLTGNIPEDLFHLKRLNLLGIQENRLSGSLSREIRNLS 244

Query: 245 SLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFF 304
           SL  L++  N  +G IP    +L  L+  +   N   G +P SL N  +L LLNL++N  
Sbjct: 245 SLVRLDVSWNLFSGEIPDVFDELPQLKFFLGQTNGFIGGIPKSLANSPSLNLLNLRNNSL 304

Query: 305 EGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVAL 364
            G + + N + ++ L  LDLG+N F G LP  L  CK L  VNLARN   GQ+       
Sbjct: 305 SGRL-MLNCTAMIALNSLDLGTNRFNGRLPENLPDCKRLKNVNLARNTFHGQVPESFKNF 363

Query: 365 KSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQV 424
           +SLS+ SLSN+SL NI+ A+ IL  CKNL  L++ LNF  E +PD+  L     F+ L+V
Sbjct: 364 ESLSYFSLSNSSLANISSALGILQHCKNLTTLVLTLNFHGEALPDDSSLH----FEKLKV 419

Query: 425 LGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEF 484
           L +A C+L G +P W+    +LQ+LDLS+N+LTG++P ++G+  +LF++D SNN  +GE 
Sbjct: 420 LVVANCRLTGSMPRWLSSSNELQLLDLSWNRLTGAIPSWIGDFKALFYLDLSNNSFTGEI 479

Query: 485 PKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVS 544
           PK   +L +LT        NE   +F  F   N    E  + L +++ + +  T     +
Sbjct: 480 PKSLTKLESLTSRNIS--VNEPSPDFPFFMKRN----ESARALQYNQIFGFPPTIELGHN 533

Query: 545 LLR----------LLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKR 594
            L             LH+ DL  N  SG+IP  +S +T+LE +DLS N LSG IPVSL++
Sbjct: 534 NLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDLSNNRLSGSIPVSLQQ 593

Query: 595 LHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCG 634
           L FLS F+VA NNL G IPSGGQF TFP+SSF  N  LCG
Sbjct: 594 LSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESN-HLCG 632

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  357 bits (915), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 252/654 (38%), Positives = 368/654 (56%), Gaps = 41/654 (6%)

Query: 11  MPKLKLLHIIIIILSCF-----SSFCQACNQIDQDSLLSL--GFNISSPGLNW----SSS 59
           M  L++  I+I++  C      +S    CN  D  +L     G   S  G  W    S S
Sbjct: 1   MGVLRVYVILILVGFCVQIVVVNSQNLTCNSNDLKALEGFMRGLESSIDGWKWNESSSFS 60

Query: 60  TDCCLWEGIKC---------DAN--GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHN 108
           ++CC W GI C         D N  GRV  L L  + L+G +S S+  L  L  LNL+HN
Sbjct: 61  SNCCDWVGISCKSSVSLGLDDVNESGRVVELELGRRKLSGKLSESVAKLDQLKVLNLTHN 120

Query: 109 RLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAW 167
            LSG   +SL + + ++++DLSSN F G  PS I     +L   NV  NSF GLI  ++ 
Sbjct: 121 SLSGSIAASLLNLSNLEVLDLSSNDFSGLFPSLIN--LPSLRVLNVYENSFHGLIP-ASL 177

Query: 168 VDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSL 227
            ++   IR +DL+ N F G +P+G+G+CS ++      N L+GS+P +++  ++L  L+L
Sbjct: 178 CNNLPRIREIDLAMNYFDGSIPVGIGNCSSVEYLGLASNNLSGSIPQELFQLSNLSVLAL 237

Query: 228 SFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSS 287
             N +SG++ + +  L++L  L++ SN  +G IP    +L  L      +N  +G +P S
Sbjct: 238 QNNRLSGALSSKLGKLSNLGRLDISSNKFSGKIPDVFLELNKLWYFSAQSNLFNGEMPRS 297

Query: 288 LKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVN 347
           L N  +++LL+L++N   G I   N S +  L  LDL SN F+GS+P  L +C  L  +N
Sbjct: 298 LSNSRSISLLSLRNNTLSGQI-YLNCSAMTNLTSLDLASNSFSGSIPSNLPNCLRLKTIN 356

Query: 348 LARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETM 407
            A+ +   QI       +SL+ LS SN+S+ NI+ A+ IL  C+NLK L++ LNF  E +
Sbjct: 357 FAKIKFIAQIPESFKNFQSLTSLSFSNSSIQNISSALEILQHCQNLKTLVLTLNFQKEEL 416

Query: 408 PDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNM 467
           P    L     FKNL+VL +A C+L+G VP W+     LQ+LDLS+NQL+G++P +LG++
Sbjct: 417 PSVPSLQ----FKNLKVLIIASCQLRGTVPQWLSNSPSLQLLDLSWNQLSGTIPPWLGSL 472

Query: 468 SSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIG--EYKK 525
           +SLF++D SNN   GE P     L +L  ++  N   E   +F  FK  N   G  +Y +
Sbjct: 473 NSLFYLDLSNNTFIGEIPHSLTSLQSLVSKE--NAVEEPSPDFPFFKKKNTNAGGLQYNQ 530

Query: 526 ILTFHEQY-----TWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLS 580
             +F         +   +       LR L H+L+L +NN SGNIP  +S +T+LE +DLS
Sbjct: 531 PSSFPPMIDLSYNSLNGSIWPEFGDLRQL-HVLNLKNNNLSGNIPANLSGMTSLEVLDLS 589

Query: 581 KNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCG 634
            N+LSG IP SL +L FLS F+VA N L G IP+G QF TFP+SSF GN  LCG
Sbjct: 590 HNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCG 643

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  252 bits (644), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 206/641 (32%), Positives = 302/641 (47%), Gaps = 87/641 (13%)

Query: 86  LTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRL 144
           L GTI   +G L +L  LNL++N L+GE PS L   + ++ + L +N  QG IP ++  L
Sbjct: 227 LNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADL 286

Query: 145 TQNLITFNVSNNSFTGLISWSAW-------------------VDSFCS----IRHLDLSN 181
             NL T ++S N+ TG I    W                     S CS    +  L LS 
Sbjct: 287 G-NLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSG 345

Query: 182 NRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIV 241
            + +G +P+ L  C  LK      N L GS+P+ ++    L  L L  N + G++   I 
Sbjct: 346 TQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSIS 405

Query: 242 NLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQS 301
           NLT+L+ L LY N+L G +P++I  L  LE L L+ N  SG +P  + NC +L ++++  
Sbjct: 406 NLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFG 465

Query: 302 NFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI 361
           N FEG+I   +   L +L +L L  N   G LP +L +C  L  ++LA NQL G I    
Sbjct: 466 NHFEGEIPP-SIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSF 524

Query: 362 VALKSLSFLSLSNNSLT--------NITGAIRILMGCKNLKVLIIPL---------NFMD 404
             LK L  L L NNSL         ++    RI +    L   I PL         +  +
Sbjct: 525 GFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTN 584

Query: 405 ETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFL 464
               D   L   N  +NL  L L + +L G++P  +GK+++L +LD+S N LTG++P  L
Sbjct: 585 NGFEDEIPLELGNS-QNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQL 643

Query: 465 GNMSSLFHIDFSNNLISGEFPKEFCRLPALT-------------PEQ------------D 499
                L HID +NN +SG  P    +L  L              P +            D
Sbjct: 644 VLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLD 703

Query: 500 KNKANESY--------------LEFSLFKGS-NNFIGEYKKILTFH-EQYTWKTTASAAV 543
            N  N S               L+ + F GS    +G+  K+      + +        +
Sbjct: 704 GNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEI 763

Query: 544 SLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNV 603
             L+ L   LDLS+NNF+G+IP  I  L+ LE +DLS N L+GE+P S+  +  L   NV
Sbjct: 764 GQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNV 823

Query: 604 AENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCSVQ 644
           + NNL G +    QF  +P+ SF GN  LCG+ + R   V+
Sbjct: 824 SFNNLGGKLKK--QFSRWPADSFLGNTGLCGSPLSRCNRVR 862

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  246 bits (628), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 193/576 (33%), Positives = 288/576 (50%), Gaps = 95/576 (16%)

Query: 75  RVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHF 133
           +++HL L    L G IS  IG L  L  L L  N  +GEFP S+++   + ++ +  N+ 
Sbjct: 313 QLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNI 372

Query: 134 QGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLG 193
            G++P+ +  LT NL   +  +N  TG I  S  + +   ++ LDLS+N+ TG +P G G
Sbjct: 373 SGELPADLGLLT-NLRNLSAHDNLLTGPIPSS--ISNCTGLKLLDLSHNQMTGEIPRGFG 429

Query: 194 SCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS 253
             + L     G N+ TG +PDDI+  ++LE LS++ N+++G++K  I  L  LRIL++  
Sbjct: 430 RMN-LTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSY 488

Query: 254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNF 313
           NSLTG IPR+IG L +L  L LH+N  +G +P  + N   L  L + SN  EG I    F
Sbjct: 489 NSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMF 548

Query: 314 STLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLS 373
              L L VLDL +N F+G +P   +  +SLT ++L  N+  G I     +LKSLS L+  
Sbjct: 549 DMKL-LSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIP---ASLKSLSLLNTF 604

Query: 374 NNSLTNITGAI--RILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECK 431
           + S   +TG I   +L   KN+++    LNF       N+ LT                 
Sbjct: 605 DISDNLLTGTIPGELLASLKNMQLY---LNF------SNNLLT----------------- 638

Query: 432 LKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRL 491
             G +P  +GKL+ +Q +DLS N  +GS+PR L    ++F +DFS N +SG  P E    
Sbjct: 639 --GTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDE---- 692

Query: 492 PALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLH 551
                               +F+G +  I                               
Sbjct: 693 --------------------VFQGMDMIIS------------------------------ 702

Query: 552 MLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGS 611
            L+LS N+FSG IP     +T+L  +DLS N+L+GEIP SL  L  L    +A NNL+G 
Sbjct: 703 -LNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGH 761

Query: 612 IPSGGQFDTFPSSSFRGNPDLCGAIVQ-RSCSVQPR 646
           +P  G F    +S   GN DLCG+    + C+++ +
Sbjct: 762 VPESGVFKNINASDLMGNTDLCGSKKPLKPCTIKQK 797

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  241 bits (615), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 211/690 (30%), Positives = 324/690 (46%), Gaps = 76/690 (11%)

Query: 1   MCCFTQQRKTMPKLKLLHIIIIILSCFSSFCQACNQIDQDSLLSLGFNIS--------SP 52
           M C  + R     L++L II I+LSC  SF  +    + ++LL      +        S 
Sbjct: 19  MACKEKPRD----LQVLLIISIVLSC--SFAVSATVEEANALLKWKSTFTNQTSSSKLSS 72

Query: 53  GLNWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTIS-LSIGNLTHLSHLNLSHNRLS 111
            +N ++S+ C  W G+ C   G +  L L   G+ GT       +L +L+ ++LS NR S
Sbjct: 73  WVNPNTSSFCTSWYGVACSL-GSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFS 131

Query: 112 GEFPSSLSSNYIKI--IDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVD 169
           G   S L   + K+   DLS N   G+IP  +  L+ NL T ++  N   G  S  + + 
Sbjct: 132 GTI-SPLWGRFSKLEYFDLSINQLVGEIPPELGDLS-NLDTLHLVENKLNG--SIPSEIG 187

Query: 170 SFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSF 229
               +  + + +N  TGP+P   G+ ++L       N L+GS+P +I    +L +L L  
Sbjct: 188 RLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDR 247

Query: 230 NHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLK 289
           N+++G I +   NL ++ +L ++ N L+G IP +IG +T L++L LH N L+G +PS+L 
Sbjct: 248 NNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLG 307

Query: 290 NCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLA 349
           N   L +L+L  N   G I       +  +  L++  N  TG +P +     +L  + L 
Sbjct: 308 NIKTLAVLHLYLNQLNGSIPP-ELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLR 366

Query: 350 RNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAI--RILMGCKNLKVLIIPLNFMDETM 407
            NQL G I PGI     L+ L L  N   N TG +   I  G K L+ L +  N  +  +
Sbjct: 367 DNQLSGPIPPGIANSTELTVLQLDTN---NFTGFLPDTICRGGK-LENLTLDDNHFEGPV 422

Query: 408 PDNDR------------------LTSANG-FKNLQVLGLAECKLKGQVPSWIGKLKKLQV 448
           P + R                  ++ A G +  L  + L+     GQ+ +   + +KL  
Sbjct: 423 PKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVA 482

Query: 449 LDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFC-------------RLPALT 495
             LS N +TG++P  + NM+ L  +D S+N I+GE P+                RL    
Sbjct: 483 FILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKI 542

Query: 496 PEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTW---------KTTASAAVSLL 546
           P   +   N  YL+ S    SN F  E    L    +  +         +T       L 
Sbjct: 543 PSGIRLLTNLEYLDLS----SNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLS 598

Query: 547 RLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAEN 606
           +L   MLDLS+N   G I  Q   L NLER+DLS N+LSG+IP S K +  L+  +V+ N
Sbjct: 599 QL--QMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHN 656

Query: 607 NLRGSIPSGGQFDTFPSSSFRGNPDLCGAI 636
           NL+G IP    F   P  +F GN DLCG++
Sbjct: 657 NLQGPIPDNAAFRNAPPDAFEGNKDLCGSV 686

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  233 bits (594), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 183/573 (31%), Positives = 297/573 (51%), Gaps = 37/573 (6%)

Query: 55  NWSSSTDC-CLWEGIKCDANGR--------VSHLWLPWKGLTGTISLSIGNLTHLSHLNL 105
           NW+   +  C W G+ C + G         V+ L L    L+G +S SIG L +L +LNL
Sbjct: 57  NWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSPSIGGLVNLVYLNL 116

Query: 106 SHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISW 164
           ++N L+G+ P  + + + ++++ L++N F G IP  I +L+Q L +FN+ NN  +G +  
Sbjct: 117 AYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQ-LRSFNICNNKLSGPLPE 175

Query: 165 SAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQ 224
              +    ++  L    N  TGP+P  LG+ ++L TFRAG N  +G++P +I    +L+ 
Sbjct: 176 E--IGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKL 233

Query: 225 LSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSL 284
           L L+ N ISG +   I  L  L+ + L+ N  +G IP+DIG LT+LE+L L+ NSL G +
Sbjct: 234 LGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPI 293

Query: 285 PSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLT 344
           PS + N  +L  L L  N   G I       L K+  +D   NL +G +P+ L+    L 
Sbjct: 294 PSEIGNMKSLKKLYLYQNQLNGTIPK-ELGKLSKVMEIDFSENLLSGEIPVELSKISELR 352

Query: 345 AVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTN-ITGAIRILMGCKNLKVLIIPLNFM 403
            + L +N+L G I   +  L++L+ L LS NSLT  I    + L   + L++     N +
Sbjct: 353 LLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLF---HNSL 409

Query: 404 DETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRF 463
              +P    L S      L V+  +E +L G++P +I +   L +L+L  N++ G++P  
Sbjct: 410 SGVIPQGLGLYSP-----LWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPG 464

Query: 464 LGNMSSLFHIDFSNNLISGEFPKEFCRLPALTP-EQDKNKANESYLEFSLFKGS-NNFIG 521
           +    SL  +    N ++G+FP E C+L  L+  E D+N+          F G     IG
Sbjct: 465 VLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNR----------FSGPLPPEIG 514

Query: 522 EYKKILTFH-EQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLS 580
             +K+   H     + +     +S L  L+   ++S N+ +G IP +I+    L+R+DLS
Sbjct: 515 TCQKLQRLHLAANQFSSNLPNEISKLSNLV-TFNVSSNSLTGPIPSEIANCKMLQRLDLS 573

Query: 581 KNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP 613
           +N   G +P  L  LH L    ++EN   G+IP
Sbjct: 574 RNSFIGSLPPELGSLHQLEILRLSENRFSGNIP 606

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  232 bits (591), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 188/586 (32%), Positives = 292/586 (49%), Gaps = 44/586 (7%)

Query: 55  NWSSSTDC-CLWEGIKCD---ANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRL 110
           NW+S+    C W G+ C    ++  V  L L    L+G +S SIG L HL  L+LS+N L
Sbjct: 50  NWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGL 109

Query: 111 SGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLT--QNLITFNVSNNSFTGLISWSAW 167
           SG+ P  + + + ++I+ L++N F G+IP  I +L   +NLI +N   N  +G  S    
Sbjct: 110 SGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYN---NRISG--SLPVE 164

Query: 168 VDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSL 227
           + +  S+  L   +N  +G +P  +G+  RL +FRAG N ++GSLP +I    SL  L L
Sbjct: 165 IGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGL 224

Query: 228 SFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSS 287
           + N +SG +   I  L  L  + L+ N  +G IPR+I   T+LE+L L+ N L G +P  
Sbjct: 225 AQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKE 284

Query: 288 LKNCINLTLLNLQSNFFEGDI--SVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTA 345
           L +  +L  L L  N   G I   + N S  +++   D   N  TG +P+ L + + L  
Sbjct: 285 LGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEI---DFSENALTGEIPLELGNIEGLEL 341

Query: 346 VNLARNQLEGQISPGIVALKSLSFLSLSNNSLTN-ITGAIRILMGCKNLKVLIIPLNFMD 404
           + L  NQL G I   +  LK+LS L LS N+LT  I    + L G   L++     N + 
Sbjct: 342 LYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLF---QNSLS 398

Query: 405 ETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFL 464
            T+P          + +L VL +++  L G++PS++     + +L+L  N L+G++P  +
Sbjct: 399 GTIP-----PKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGI 453

Query: 465 GNMSSLFHIDFSNNLISGEFPKEFCRLPALTP-EQDKNK---------ANESYLEFSLFK 514
               +L  +  + N + G FP   C+   +T  E  +N+          N S L+  L  
Sbjct: 454 TTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQ-RLQL 512

Query: 515 GSNNFIGEYKKILTFHEQY------TWKTTASAAVSLLRL-LLHMLDLSHNNFSGNIPDQ 567
             N F GE  + +    Q       + K T      +    +L  LD+  NNFSG +P +
Sbjct: 513 ADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSE 572

Query: 568 ISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP 613
           +  L  LE + LS N+LSG IPV+L  L  L+   +  N   GSIP
Sbjct: 573 VGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIP 618

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	653
359482434	1280	PREDICTED: tyrosine-sulfated glycopeptid	0.934	0.476	0.559	0.0
255537393	1087	Leucine-rich repeat receptor protein kin	0.917	0.551	0.540	0.0
147832546	1188	hypothetical protein VITISV_009907 [Viti	0.897	0.493	0.529	1e-174
224074123	1050	predicted protein [Populus trichocarpa]	0.943	0.586	0.541	1e-173
356504209	1076	PREDICTED: tyrosine-sulfated glycopeptid	0.967	0.587	0.508	1e-171
219718185	1085	receptor kinase [Gossypium barbadense]	0.935	0.563	0.518	1e-170
224138536	1092	predicted protein [Populus trichocarpa]	0.941	0.563	0.526	1e-168
449436222	1095	PREDICTED: tyrosine-sulfated glycopeptid	0.898	0.536	0.524	1e-166
356520190	1103	PREDICTED: tyrosine-sulfated glycopeptid	0.958	0.567	0.485	1e-166
358248614	1065	tyrosine-sulfated glycopeptide receptor	0.958	0.587	0.485	1e-165

>gi|359482434|ref|XP_002270860.2| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Vitis vinifera]

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/651 (55%), Positives = 459/651 (70%), Gaps = 41/651 (6%)

Query: 32  QACNQIDQDSLLSLGFNISSPG---LNWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTG 88
           QAC+ +D+ SLLS   +ISSP    LNWSS  DCCLWEGI C   GRV+HL LP +GL+G
Sbjct: 250 QACHHLDRASLLSFSRDISSPPSAPLNWSS-FDCCLWEGITC-YEGRVTHLRLPLRGLSG 307

Query: 89  TISLSIGNLTHLSHLNLSHN----------------------RLSGEFPSSLSSN----- 121
            +S S+ NLT LSHLNLS N                      RLSGE P SLS +     
Sbjct: 308 GVSPSLANLTLLSHLNLSRNSFSGSVPLELFSSLEILDVSFNRLSGELPLSLSQSPNNSG 367

Query: 122 -YIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLS 180
             ++ IDLSSNHF G I S+  +L +NL  FNVSNNSFT  I      +S   +R +D S
Sbjct: 368 VSLQTIDLSSNHFYGVIQSSFLQLARNLTNFNVSNNSFTDSIPSDICRNSPL-VRLMDFS 426

Query: 181 NNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGI 240
            N+F+G VPLGLG CS+L+  RAGFN L+G +P+DIY+A +L ++SL  N +SG I + I
Sbjct: 427 YNKFSGRVPLGLGDCSKLEVLRAGFNSLSGLIPEDIYSAAALREISLPVNSLSGPISDAI 486

Query: 241 VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQ 300
           VNL++L +LELYSN L G +P+D+GKL  L+ L+LH N L+G LP+SL NC  LT LNL+
Sbjct: 487 VNLSNLTVLELYSNQLIGNLPKDMGKLFYLKRLLLHINKLTGPLPASLMNCTKLTTLNLR 546

Query: 301 SNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG 360
            N FEGDISV  FSTL +L  LDLG N FTG+LP++L SCKSLTAV LA N+LEGQI P 
Sbjct: 547 VNLFEGDISVIKFSTLQELSTLDLGDNNFTGNLPVSLYSCKSLTAVRLANNRLEGQILPD 606

Query: 361 IVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFK 420
           I+AL+SLSFLS+S N+LTNITGAIR+LMGC+NL  +I+  NF +E +PD+D +  +NGF+
Sbjct: 607 ILALQSLSFLSISKNNLTNITGAIRMLMGCRNLSTVILTQNFFNERLPDDDSILDSNGFQ 666

Query: 421 NLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLI 480
            LQVLGL  C+  GQVP+W+ KL KL+VLDLS NQ+TGS+P +LG + SLF+ID S+NLI
Sbjct: 667 RLQVLGLGGCRFTGQVPTWLAKLSKLEVLDLSLNQITGSIPGWLGTLPSLFYIDLSSNLI 726

Query: 481 SGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIG-EYKKILTFHEQYTWKTTA 539
           SGEFPKE  RLP LT E+   + ++SYLE  +F   NN    +YK++         +  +
Sbjct: 727 SGEFPKEIIRLPRLTSEEAATEVDQSYLELPVFVMPNNATNLQYKQLSNLPPAIYLRNNS 786

Query: 540 -----SAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKR 594
                   +  L+  +H+LDLS+NNFSG+IPDQIS LTNLE++DLS NHLSGEIP SL+ 
Sbjct: 787 LSGNIPTEIGQLK-FIHILDLSYNNFSGSIPDQISNLTNLEKLDLSGNHLSGEIPGSLRS 845

Query: 595 LHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCSVQP 645
           LHFLS+FNVA N+L G+IPSGGQFDTFP+SSF GNP LCG  +QRSCS QP
Sbjct: 846 LHFLSSFNVANNSLEGAIPSGGQFDTFPNSSFEGNPGLCGPPLQRSCSNQP 896

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537393|ref|XP_002509763.1| Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis] gi|223549662|gb|EEF51150.1| Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/655 (54%), Positives = 448/655 (68%), Gaps = 56/655 (8%)

Query: 33  ACNQIDQDSLLSLGFNISS-PGLNWSSSTDCCLWEGIKCDA-NGRVSHLWLPWKGLTGTI 90
           ACNQ D DSLL    N+SS P L WS S DCC WEGI+C   + RV+ LWLP++GL+G +
Sbjct: 57  ACNQDDHDSLLPFYSNLSSFPPLGWSPSIDCCNWEGIECRGIDDRVTRLWLPFRGLSGVL 116

Query: 91  SLSIGNLTHLSHLNLSHNRLSGEFP---------------------SSLSSN------YI 123
           S S+ NLT+LSHLNLSHNRL G  P                       L SN       I
Sbjct: 117 SPSLANLTYLSHLNLSHNRLFGPIPHGFFSYLDNLQILDLSYNRLTGELPSNDNNTNVAI 176

Query: 124 KIIDLSSNHFQGKIPS-TIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNN 182
           +++DLSSN   G IPS +I ++ +NL +FNVSNNSFTG I  +    SF S+  LD S N
Sbjct: 177 QLVDLSSNQLSGTIPSNSILQVARNLSSFNVSNNSFTGQIPSNICTVSFSSMSILDFSYN 236

Query: 183 RFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVN 242
            F+G +P G+G CS L+ F AGFN L+G++PDDIY A  LEQLSL  N++SG+I + +VN
Sbjct: 237 DFSGSIPFGIGKCSNLRIFSAGFNNLSGTIPDDIYKAVLLEQLSLPLNYLSGTISDSLVN 296

Query: 243 LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN 302
           L +LRI +LYSN+LTGLIP+DIGKL+ LE L LH N+L+G+LP+SL NC  L  LNL+ N
Sbjct: 297 LNNLRIFDLYSNNLTGLIPKDIGKLSKLEQLQLHINNLTGTLPASLMNCTKLVTLNLRVN 356

Query: 303 FFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIV 362
             EG++  F+FS LL+L +LDLG+N F G+LP  L +CKSL AV LA NQL GQI P I 
Sbjct: 357 LLEGELEAFDFSKLLQLSILDLGNNNFKGNLPTKLYACKSLKAVRLAYNQLGGQILPEIQ 416

Query: 363 ALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNL 422
           AL+SLSFLS+S+N+LTN+TGAI+I+MGCKNL  LI+ +NFM+ET+PD   +  +NGF+NL
Sbjct: 417 ALESLSFLSVSSNNLTNLTGAIQIMMGCKNLTTLILSVNFMNETIPDGG-IIDSNGFQNL 475

Query: 423 QVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISG 482
           QVL L    L GQVP+W+ KLK L+VLDLS N++TG +P +LGN+ SLF++D S N +SG
Sbjct: 476 QVLALGASGLSGQVPTWLAKLKNLEVLDLSLNRITGLIPSWLGNLPSLFYVDLSRNFLSG 535

Query: 483 EFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAA 542
           EFPKE   LP L  +  K   + SYL   +F   NN           ++QY   +    A
Sbjct: 536 EFPKELAGLPTLAFQGAKELIDRSYLPLPVFAQPNN---------ATYQQYNQLSNLPPA 586

Query: 543 VSL---------------LRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGE 587
           + L               L+  LH+LDLS+NNFSGNIPDQ+S LTNLE++DLS N LSGE
Sbjct: 587 IYLGNNHLSGDIPIEIGQLK-FLHVLDLSNNNFSGNIPDQLSNLTNLEKLDLSGNQLSGE 645

Query: 588 IPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCS 642
           IP SL+ LHFLS+F+V +NNL+G IPSGGQFDTFP SSF GNP LCG I+QRSCS
Sbjct: 646 IPASLRGLHFLSSFSVRDNNLQGPIPSGGQFDTFPISSFVGNPGLCGPILQRSCS 700

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832546|emb|CAN68301.1| hypothetical protein VITISV_009907 [Vitis vinifera]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 345/651 (52%), Positives = 437/651 (67%), Gaps = 65/651 (9%)

Query: 32  QACNQIDQDSLLSLGFNISSPG---LNWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTG 88
           QAC+ +D+ SLLS   +ISSP    LNWSS  DCCLWEGI C  +GRV+HL LP +GL+G
Sbjct: 48  QACHHLDRASLLSFSRDISSPPSAPLNWSS-FDCCLWEGITC-YDGRVTHLRLPLRGLSG 105

Query: 89  TISLSIGNLTHLSHLNLSHN----------------------RLSGEFPSSLSSN----- 121
            +S S+ NLT LSHLNLS N                      RLSGE P SLS +     
Sbjct: 106 GVSPSLANLTLLSHLNLSRNSFSGSVPLELFSSLEILDVSFNRLSGELPVSLSQSPNNSG 165

Query: 122 -YIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLS 180
             ++ IDLSSNHF G I S+  +L +NL  FNVSNNSFT  I      +S   +R +D S
Sbjct: 166 VSLQTIDLSSNHFYGVIQSSFLQLARNLTNFNVSNNSFTDSIPSDICRNSPL-VRLMDFS 224

Query: 181 NNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGI 240
            N+F+G VPLGLG CS+L+  RAGFN L+G +P+DIY+A +L ++SL  N +SG I + I
Sbjct: 225 YNKFSGRVPLGLGDCSKLEVLRAGFNSLSGLIPEDIYSAAALREISLPVNSLSGPISDAI 284

Query: 241 VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQ 300
           VNL++L +LELYSN L G +P+D+GKL  L+ L+LH N L+G LP+SL +C  LT LNL+
Sbjct: 285 VNLSNLTVLELYSNQLIGNLPKDMGKLFYLKRLLLHINKLTGPLPASLMDCTKLTTLNLR 344

Query: 301 SNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG 360
            N FEGDISV  FSTL +L  LDLG N FTG+LP++L SCKSLTAV LA N+LEGQI P 
Sbjct: 345 VNLFEGDISVIKFSTLQELSTLDLGDNNFTGNLPVSLYSCKSLTAVRLANNRLEGQILPD 404

Query: 361 IVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFK 420
           I+AL+SLSFLS+S N+LTNITGAIR+LMGC+NL  +I+  NF +E +PD+D +  +NGF+
Sbjct: 405 ILALQSLSFLSISKNNLTNITGAIRMLMGCRNLSTVILTQNFFNERLPDDDSILDSNGFQ 464

Query: 421 NLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLI 480
            LQVLGL  C+  G +P W+G L  L                        F+ID S+NLI
Sbjct: 465 RLQVLGLGGCRFTGSIPGWLGTLPSL------------------------FYIDLSSNLI 500

Query: 481 SGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIG-EYKKILTFHEQYTWKTTA 539
           SGEFPKE  RLP LT E+   + ++SYLE  +F   NN    +YK++         +  +
Sbjct: 501 SGEFPKEIIRLPRLTSEEAATEVDQSYLELPVFVMPNNATNLQYKQLSNLPPAIYLRNNS 560

Query: 540 -----SAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKR 594
                   +  L+  +H+LDLS+NNFSG+IPDQIS LTNLE++DLS NHLSGEIP SL+ 
Sbjct: 561 LSGNIPTEIGQLK-FIHILDLSYNNFSGSIPDQISNLTNLEKLDLSGNHLSGEIPGSLRS 619

Query: 595 LHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCSVQP 645
           LHFLS+FNVA N+L G+IPSGGQFDTFP+SSF GNP LCG  +QRSCS QP
Sbjct: 620 LHFLSSFNVANNSLEGAIPSGGQFDTFPNSSFEGNPGLCGPPLQRSCSNQP 670

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074123|ref|XP_002304261.1| predicted protein [Populus trichocarpa] gi|222841693|gb|EEE79240.1| predicted protein [Populus trichocarpa]

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 355/655 (54%), Positives = 441/655 (67%), Gaps = 39/655 (5%)

Query: 29  SFCQA---CNQIDQDSLLSLGFNISSPGLNWSSSTDCCLWEGIKCD--ANGRVSHLWLPW 83
           S C A   CNQ D DSLLS    +SS  LNW  STDCCLWEG+ C+  A+GRV+ L LP+
Sbjct: 13  SPCHAATVCNQDDHDSLLSFSSYLSS-PLNWDRSTDCCLWEGVDCNETADGRVTSLSLPF 71

Query: 84  KGLTGTISLSIGNLTHLSHLNLSHNRL-------------------------SGEFPSSL 118
           + LTGT+S  + NLT L+HLNLSHNRL                          GE PS  
Sbjct: 72  RDLTGTLSPYLANLTSLTHLNLSHNRLHGPLPVGFFSSLSGLQVLDLSYNRLDGELPSVD 131

Query: 119 SSNY-IKIIDLSSNHFQGKIP--STIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIR 175
           ++N  IKI+DLSSNHF G++   ++  R   NL   NVSNNSFTG I  +    S  SI 
Sbjct: 132 TNNLPIKIVDLSSNHFDGELSHSNSFLRAAWNLTRLNVSNNSFTGQIPSNVCQISPVSIT 191

Query: 176 HLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGS 235
            LD S+N F+G +   LG CS+L+ FRAGFN L+G +PDD+Y ATSL   SL  N++SG 
Sbjct: 192 LLDFSSNDFSGNLTPELGECSKLEIFRAGFNNLSGMIPDDLYKATSLVHFSLPVNYLSGP 251

Query: 236 IKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLT 295
           + + +VNLT+L++LELYSN  +G IPRDIGKL+ LE L+LH NSL+G LP SL NC +L 
Sbjct: 252 VSDAVVNLTNLKVLELYSNKFSGRIPRDIGKLSKLEQLLLHINSLAGPLPPSLMNCTHLV 311

Query: 296 LLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEG 355
            LNL+ NF  G++S  +FSTL KL  LDLG+N F G  P +L SC SL AV LA NQ+EG
Sbjct: 312 KLNLRVNFLAGNLSDLDFSTLPKLTTLDLGNNNFAGIFPTSLYSCTSLVAVRLASNQIEG 371

Query: 356 QISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTS 415
           QISP I ALKSLSFLS+S N+LTNITGAIRILMGCK+L  LI+  N M E + D+     
Sbjct: 372 QISPDITALKSLSFLSISANNLTNITGAIRILMGCKSLTALILSNNTMSEGILDDGNTLD 431

Query: 416 ANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDF 475
           + GF+NLQVL L  CKL GQVPSW+  +  LQV+DLS+NQ+ GS+PR+LG++SSLF++D 
Sbjct: 432 STGFQNLQVLALGRCKLSGQVPSWLASITSLQVIDLSYNQIRGSIPRWLGDLSSLFYLDL 491

Query: 476 SNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLF-KGSNNFIGEYKKILTFHEQYT 534
           SNNL+SG FP E   L ALT ++   +   SYLE  +F K +N    +Y ++ +      
Sbjct: 492 SNNLLSGGFPLELAGLRALTSQEAVKRVERSYLELPVFVKPTNATNLQYNQLSSLPPAIY 551

Query: 535 WKT---TASAAVSLLRL-LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPV 590
            K    + +  V + +L  LH+LDLS N F GNIPDQ+S LTNLE++DLS N LSGEIP 
Sbjct: 552 LKNNNLSGNIPVQIGQLKFLHVLDLSDNRFFGNIPDQLSNLTNLEKLDLSGNDLSGEIPT 611

Query: 591 SLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCSVQP 645
           SL  LHFLS FNVA N L+G IPSGGQFDTFPSSSF GNP LCG ++QRSCS  P
Sbjct: 612 SLSGLHFLSLFNVANNELQGPIPSGGQFDTFPSSSFVGNPGLCGQVLQRSCSSSP 666

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504209|ref|XP_003520891.1| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Glycine max]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 344/677 (50%), Positives = 450/677 (66%), Gaps = 45/677 (6%)

Query: 13  KLKLLHIIIIILSCFSSFCQA--CNQIDQDSLLSLGFNISSPG-LNWS-SSTDCCLWEGI 68
           KL +  +I+ +LS F    QA  CNQ+D+DSLLS   NISSP  LNWS SS DCC WEGI
Sbjct: 15  KLMVFVLILFLLSGFLVLVQASSCNQLDRDSLLSFSRNISSPSPLNWSASSVDCCSWEGI 74

Query: 69  KCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS--NYIKII 126
            CD + RV HL LP + L+G +S S+ NLT LS LNLSHNRLSG  P+   S  N+++I+
Sbjct: 75  VCDEDLRVIHLLLPSRALSGFLSPSLTNLTALSRLNLSHNRLSGNLPNHFFSLLNHLQIL 134

Query: 127 DLSSNHFQGKIPSTIFRLTQNLI--------------------------------TFNVS 154
           DLS N F G++P  +  ++ N I                                +FNVS
Sbjct: 135 DLSFNLFSGELPPFVANISGNTIQELDMSSNLFHGTLPPSLLQHLADAGAGGSLTSFNVS 194

Query: 155 NNSFTGLI--SWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSL 212
           NNSFTG I  S  +   S  S+R LD S+N F G +  GLG+CS L+ FRAG N L+G L
Sbjct: 195 NNSFTGHIPTSLCSNHSSSSSLRFLDYSSNDFIGTIQPGLGACSNLERFRAGSNSLSGPL 254

Query: 213 PDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLES 272
           P DI+ A +L ++SL  N ++G+I  GIVNL +L +LELYSN+ TG IP DIGKL+ LE 
Sbjct: 255 PGDIFNAVALTEISLPLNKLNGTIGEGIVNLANLTVLELYSNNFTGPIPSDIGKLSKLER 314

Query: 273 LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGS 332
           L+LH N+++G+LP+SL +C NL +L+++ N  EGD+S  NFS LL+L  LDLG+N FTG 
Sbjct: 315 LLLHANNITGTLPTSLMDCANLVMLDVRLNLLEGDLSALNFSGLLRLTALDLGNNSFTGI 374

Query: 333 LPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKN 392
           LP TL +CKSL AV LA N  EGQISP I+ L+SL+FLS+S N L+N+TGA+++LM  KN
Sbjct: 375 LPPTLYACKSLKAVRLASNHFEGQISPDILGLQSLAFLSISTNHLSNVTGALKLLMELKN 434

Query: 393 LKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLS 452
           L  L++  NF +E MPD+  +T+ +GF+ +QVL L  C   GQ+P W+  LKKL+VLDLS
Sbjct: 435 LSTLMLSQNFFNEMMPDDANITNPDGFQKIQVLALGGCNFTGQIPRWLVNLKKLEVLDLS 494

Query: 453 FNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSL 512
           +NQ++GS+P +L  +  LF+ID S N ++G FP E  RLPALT +Q  ++   +YLE  L
Sbjct: 495 YNQISGSIPPWLNTLPELFYIDLSFNRLTGIFPTELTRLPALTSQQAYDEVERTYLELPL 554

Query: 513 FKGSNNFIG-EYKKILTFHEQYTWKTTA---SAAVSLLRL-LLHMLDLSHNNFSGNIPDQ 567
           F  +NN    +Y +I            +   S  + + +L +LH LDLS+N FSGNIP +
Sbjct: 555 FANANNVSQMQYNQISNLPPAIYLGNNSLNGSIPIEIGKLKVLHQLDLSNNKFSGNIPAE 614

Query: 568 ISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFR 627
           IS L NLE++ LS N LSGEIPVSLK LHFLSAF+VA NNL+G IP+GGQFDTF SSSF 
Sbjct: 615 ISNLINLEKLYLSGNQLSGEIPVSLKSLHFLSAFSVAYNNLQGPIPTGGQFDTFSSSSFE 674

Query: 628 GNPDLCGAIVQRSCSVQ 644
           GN  LCG++VQRSC  Q
Sbjct: 675 GNLQLCGSVVQRSCLPQ 691

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219718185|gb|ACL35341.1| receptor kinase [Gossypium barbadense]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 342/659 (51%), Positives = 436/659 (66%), Gaps = 48/659 (7%)

Query: 27  FSSFCQA-CNQIDQDSLLSLGFNISSPG---LNWSSSTDCCLWEGIKCDA--NGRVSHLW 80
           F+S  QA C+Q D+  LL+   NI++P    LNW+++TDCC WEG+ CD   +GRVS LW
Sbjct: 39  FASPSQAACDQNDRVFLLAFHSNITAPSSSPLNWTTTTDCCFWEGVGCDGPDSGRVSRLW 98

Query: 81  LPWKGLTGTISLS-------------------------IGNLTHLSHLNLSHNRLSGEFP 115
           LP +GLTG +S S                           +L HL  L+LS+N L GE  
Sbjct: 99  LPSRGLTGHLSTSLLNLTLLTHLNFSHNRFTGFLPSGFFSSLNHLQVLDLSYNSLYGELS 158

Query: 116 SSLSSNY------IKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVD 169
               S+Y      I+ +DLSSNHF G I S       NL  FNVSNN+ TG +   +W+ 
Sbjct: 159 LDFISDYNNSLSPIQTLDLSSNHFSGTIRSNSVLQAVNLTIFNVSNNTLTGQVP--SWIC 216

Query: 170 SFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSF 229
              S+  LDLS N+  G +P GL  CS+L+ FRAGFN L+G+LP DIY+ +SLEQLSL  
Sbjct: 217 INTSLTILDLSYNKLDGKIPTGLDKCSKLQIFRAGFNNLSGTLPADIYSVSSLEQLSLPL 276

Query: 230 NHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLK 289
           NH SG I++ IV L  L ILEL+SN   G IP+DIG+L+ LE L+LH N+ +G LP SL 
Sbjct: 277 NHFSGGIRDAIVQLDKLTILELFSNEFEGPIPKDIGQLSKLEQLLLHINNFTGYLPPSLM 336

Query: 290 NCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLA 349
           +C NL  LNL+ N  EGD+S FNFSTL +L  LDL +N FTG+LP++L SCKSLTAV LA
Sbjct: 337 SCTNLVTLNLRVNHLEGDLSAFNFSTLQRLNTLDLSNNNFTGTLPLSLYSCKSLTAVRLA 396

Query: 350 RNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPD 409
            NQLEGQISP I+AL+SLSFLS+S N LTNITGAIRIL   KNL  LI+  NFM+E +P 
Sbjct: 397 SNQLEGQISPAILALRSLSFLSISTNKLTNITGAIRILKEVKNLTTLILTKNFMNEAIP- 455

Query: 410 NDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSS 469
           ND      GF+NLQ+L L  C   GQVP W+ KLK L+VLDLS N+++G +P +LG++S+
Sbjct: 456 NDENIIGEGFQNLQILALGGCNFTGQVPRWLAKLKNLEVLDLSQNRISGLIPSWLGSLSN 515

Query: 470 LFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGE--YKKIL 527
           LF+ID S NLISGEFPKE   L AL  ++  N+ + SYLE  +F   NN   +  Y ++ 
Sbjct: 516 LFYIDLSANLISGEFPKELTSLWALATQESNNQVDRSYLELPVFVMPNNATSQQLYNQLS 575

Query: 528 TFHEQYTWKT-----TASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKN 582
           +       +          A+  LR  LH+LDLS N+FSG+IP+++S LTNLE++DLS N
Sbjct: 576 SLPPAIYLRNNNLSGNIPEAIGQLR-FLHVLDLSQNDFSGSIPEELSNLTNLEKLDLSGN 634

Query: 583 HLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSC 641
            LSG+IP SL+ L+FLS+F+VA NNL+G IPSGGQFDTF SSSF GNP LCG+IVQR C
Sbjct: 635 RLSGQIPESLRGLYFLSSFSVAYNNLQGPIPSGGQFDTFTSSSFEGNPGLCGSIVQRIC 693

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138536|ref|XP_002326627.1| predicted protein [Populus trichocarpa] gi|222833949|gb|EEE72426.1| predicted protein [Populus trichocarpa]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 345/655 (52%), Positives = 432/655 (65%), Gaps = 40/655 (6%)

Query: 31  CQA---CNQIDQDSLLSLGFNISSPGL-NWSSSTDCCLWEGIKCD--ANGRVSHLWLPWK 84
           C A   CNQ D DSLL     +SS    NW  STDCCLWEG+ C   A+GRV+ L+LP++
Sbjct: 54  CHATTVCNQDDHDSLLLFFSCLSSSSPLNWGHSTDCCLWEGVDCGGTADGRVTSLYLPFR 113

Query: 85  GLTGTISLSIGNLTHLSHLNLSHNRLSGEFP------------------------SSLSS 120
            L GT++ S+ NLT L+HLNLSHNRL G  P                         SL +
Sbjct: 114 DLNGTLAPSLANLTSLTHLNLSHNRLYGSLPVRFFSSLRSLQVLDLSYNRLDGEIPSLDT 173

Query: 121 NY---IKIIDLSSNHFQGKIP--STIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIR 175
           N    IKI+DLSSNHF G++   ++  +   NL   NVSNNSF G I  +    S  S  
Sbjct: 174 NNLIPIKIVDLSSNHFYGELSQSNSFLQTACNLTRLNVSNNSFAGQIPSNICNISSGSTT 233

Query: 176 HLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGS 235
            LD SNN F+G +  G G CS+L+ FRAGFN L+G +PDD+Y ATSL   SL  N +SG 
Sbjct: 234 LLDFSNNDFSGNLTPGFGECSKLEIFRAGFNNLSGMIPDDLYKATSLVHFSLPVNQLSGQ 293

Query: 236 IKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLT 295
           I + +VNLTSLR+LELYSN L G IPRDIGKL+ LE L+LH NSL+G LP SL NC NL 
Sbjct: 294 ISDAVVNLTSLRVLELYSNQLGGRIPRDIGKLSKLEQLLLHINSLTGPLPPSLMNCTNLV 353

Query: 296 LLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEG 355
            LN++ NF  G++S  +FSTL  L  LDLG+N FTG+ P +L SC SL AV LA NQ+EG
Sbjct: 354 KLNMRVNFLAGNLSDSDFSTLRNLSTLDLGNNKFTGTFPTSLYSCTSLVAVRLASNQIEG 413

Query: 356 QISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTS 415
           QI P I+AL+SLSFLS+S N+LTNITGAIRILMGCK+L  LI+  N M E + D+     
Sbjct: 414 QILPDILALRSLSFLSISANNLTNITGAIRILMGCKSLSTLILSNNTMSEGILDDGNTLD 473

Query: 416 ANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDF 475
           + GF+NLQVL L  CKL GQVPSW+  +  LQV+DLS+NQ+ GS+P +L N+SSLF++D 
Sbjct: 474 STGFQNLQVLALGRCKLSGQVPSWLANISSLQVIDLSYNQIRGSIPGWLDNLSSLFYLDL 533

Query: 476 SNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIG-EYKKILTFHEQYT 534
           SNNL+SGEFP +   L  LT ++   + + SYLE  +F    N    +Y ++        
Sbjct: 534 SNNLLSGEFPLKLTGLRTLTSQEVIKQLDRSYLELPVFVMPTNATNLQYNQLSNLPPAIY 593

Query: 535 WKT---TASAAVSLLRL-LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPV 590
                 + +  V + +L  LH+LDLS N FSGNIPD++S L NLE++DLS N LSGEIP 
Sbjct: 594 LGNNNLSGNIPVQIGQLNFLHVLDLSDNRFSGNIPDELSNLANLEKLDLSGNLLSGEIPT 653

Query: 591 SLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCSVQP 645
           SLK LHFLS+F+VA N+L+G IPSGGQFDTFPSSSF GN  LCG ++QRSCS  P
Sbjct: 654 SLKGLHFLSSFSVANNDLQGPIPSGGQFDTFPSSSFTGNQWLCGQVLQRSCSSSP 708

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436222|ref|XP_004135892.1| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Cucumis sativus] gi|449491098|ref|XP_004158799.1| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Cucumis sativus]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 333/635 (52%), Positives = 430/635 (67%), Gaps = 48/635 (7%)

Query: 59  STDCCLWEGIKCDA-----NGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGE 113
           + DCC WEG+ C+A     + RV+ L LP +GL G    ++ NLT LSHL+LSHNR  G 
Sbjct: 79  TIDCCSWEGVICEAIANSDDNRVTQLLLPSRGLRGEFPSTLTNLTFLSHLDLSHNRFYGS 138

Query: 114 FPS------------SLSSN------------------YIKIIDLSSNHFQGKIPSTIFR 143
            PS            +LS N                   I+ +DLSSN F G+IP++  +
Sbjct: 139 LPSDFFKSLSHLKELNLSYNLLTGQLPPLPSPSSSSGLLIETLDLSSNRFYGEIPASFIQ 198

Query: 144 ---LTQNLITFNVSNNSFTGLISWSAWVD--SFCSIRHLDLSNNRFTGPVPLGLGSCSRL 198
              ++ +L +FNV NNSFTGLI  S  V+  S  S+R LD SNN F G +P GL  C  L
Sbjct: 199 QVAISGSLTSFNVRNNSFTGLIPTSFCVNTTSISSVRLLDFSNNGFGGGIPQGLEKCHNL 258

Query: 199 KTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTG 258
           + FRAGFN LTG +P D+Y   +L++LSL  NH SG+I +GIVNLT+LRILEL+SNSL G
Sbjct: 259 EVFRAGFNSLTGPIPSDLYNVLTLKELSLHVNHFSGNIGDGIVNLTNLRILELFSNSLIG 318

Query: 259 LIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLK 318
            IP DIGKL+NLE L LH N+L+GSLP SL NC NLTLLNL+ N  +GD+S  NFS L+ 
Sbjct: 319 PIPTDIGKLSNLEQLSLHINNLTGSLPPSLMNCTNLTLLNLRVNKLQGDLSNVNFSRLVG 378

Query: 319 LRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT 378
           L  LDLG+N+FTG++P TL SCKSL AV LA NQL G+I+  I AL+SLSF+S+S N+LT
Sbjct: 379 LTTLDLGNNMFTGNIPSTLYSCKSLKAVRLASNQLSGEITHEIAALQSLSFISVSKNNLT 438

Query: 379 NITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPS 438
           N++GA+R LMGCKNL  L++  +++ E +PD D +  AN F+N+Q L +   +L G+VPS
Sbjct: 439 NLSGALRNLMGCKNLGTLVMSGSYVGEALPDEDMIVDANTFQNIQALAIGASQLTGKVPS 498

Query: 439 WIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQ 498
           WI KL+ L+VLDLSFN+L GS+P +LG+  SLF+ID SNN ISG+FP + CRL AL  +Q
Sbjct: 499 WIQKLRSLEVLDLSFNRLVGSIPEWLGDFPSLFYIDLSNNRISGKFPTQLCRLQALMSQQ 558

Query: 499 DKNKANESYLEFSLFKGSNNFIG-EYKKILTFHEQ-YTWKTTASAAVSL----LRLLLHM 552
             + A +S+L   +F   +N    +Y ++ +     Y    T S  + L    L+  +H+
Sbjct: 559 ILDPAKQSFLALPVFVAPSNATNQQYNQLSSLPPAIYLGNNTISGPIPLEIGQLK-FIHI 617

Query: 553 LDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSI 612
           LDLS+N+FSG+IPD IS L+NLER+DLS NHL+GEIP SLK LHFLS F+VA N L+G I
Sbjct: 618 LDLSNNSFSGSIPDTISNLSNLERLDLSHNHLTGEIPHSLKGLHFLSWFSVAFNELQGPI 677

Query: 613 PSGGQFDTFPSSSFRGNPDLCG-AIVQRSCSVQPR 646
           PSGGQFDTFPSSS+ GN  LCG  IVQRSCS Q R
Sbjct: 678 PSGGQFDTFPSSSYEGNSGLCGPPIVQRSCSSQTR 712

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520190|ref|XP_003528747.1| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Glycine max]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 334/688 (48%), Positives = 443/688 (64%), Gaps = 62/688 (9%)

Query: 15  KLLHIIII---ILSCFSSFCQACNQIDQDSLLSLGFNISS----PGLNWSSSTDCCLWEG 67
           KL+  II+   +LS F     +CNQID+ SLL+   NIS+    P LNWS S DCC WEG
Sbjct: 34  KLMVTIIVPLFLLSLFVVQVSSCNQIDKLSLLAFSGNISTSPPYPSLNWSDSLDCCSWEG 93

Query: 68  IKCDANGRVSHLWLPWKGLTGTISLSI-----------------GNLTH--------LSH 102
           I CD + RV+HL LP +GLTG IS S+                 G L H        L  
Sbjct: 94  ITCDGDLRVTHLLLPSRGLTGFISPSLTNLSSLSQLNLSHNRLSGTLQHHFFSLLNHLLV 153

Query: 103 LNLSHNRLSGEFPSSL--------SSNYIKIIDLSSNHFQGKIPSTIFR------LTQNL 148
           L+LS+NRLSGE P  +        S   I+ +DLSSN F G +P+++           + 
Sbjct: 154 LDLSYNRLSGELPPFVGDISGKNSSGGVIQELDLSSNLFNGTLPNSLLEHLAAAAAGGSF 213

Query: 149 ITFNVSNNSFTGLISWSAWVDSFC-------SIRHLDLSNNRFTGPVPLGLGSCSRLKTF 201
           ++ NVSNNS TG I  S     FC       S+R LD S+N F G +  GLG+CS+L+ F
Sbjct: 214 VSLNVSNNSLTGHIPTSL----FCVNDHNSSSLRFLDYSSNEFDGAIQPGLGACSKLEKF 269

Query: 202 RAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIP 261
           +AGFN+L+G +P D++ A SL ++SL  N ++G+I +GIV LT+L +LELYSN  TG IP
Sbjct: 270 KAGFNFLSGPIPSDLFDAVSLTEISLPLNRLTGTIADGIVGLTNLTVLELYSNHFTGSIP 329

Query: 262 RDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRV 321
            DIG+L+ LE L+LH N+L+G++P SL NC+NL +LNL+ N  EG++S FNFS  L L  
Sbjct: 330 HDIGELSKLERLLLHVNNLTGTMPPSLINCVNLVVLNLRVNLLEGNLSAFNFSRFLGLTT 389

Query: 322 LDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNIT 381
           LDLG+N FTG LP TL +CKSL+AV LA N+LEG+ISP I+ L+SLSFLS+S N L N+T
Sbjct: 390 LDLGNNHFTGVLPPTLYACKSLSAVRLASNKLEGEISPKILELESLSFLSISTNKLRNVT 449

Query: 382 GAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIG 441
           GA+RIL G KNL  L++ +NF +E +P +  +   +GF+ LQVLG   C   GQ+P W+ 
Sbjct: 450 GALRILRGLKNLSTLMLSMNFFNEMIPQDVNIIEPDGFQKLQVLGFGGCNFTGQIPGWLV 509

Query: 442 KLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKN 501
           KLKKL+ LDLSFNQ++G +P +LG +  LF++D S NL++G FP E   LPAL  +Q  +
Sbjct: 510 KLKKLEALDLSFNQISGPIPLWLGTLPQLFYMDLSVNLLTGVFPVELTELPALASQQAND 569

Query: 502 KANESYLEFSLFKGSNNF-IGEYKKILTFHEQYTWKT---TASAAVSLLRL-LLHMLDLS 556
           K   +Y E  +F  +NN  + +Y ++          +     S  + + +L +LH LDL 
Sbjct: 570 KVERTYFELPVFANANNVSLLQYNQLSGLPPAIYLGSNHLNGSIPIEIGKLKVLHQLDLK 629

Query: 557 HNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGG 616
            NNFSGNIP Q S LTNLE++DLS N LSGEIP SL+RLHFLS F+VA NNL+G IP+GG
Sbjct: 630 KNNFSGNIPVQFSNLTNLEKLDLSGNQLSGEIPDSLRRLHFLSFFSVAFNNLQGQIPTGG 689

Query: 617 QFDTFPSSSFRGNPDLCGAIVQRSCSVQ 644
           QFDTF +SSF GN  LCG ++QRSC  Q
Sbjct: 690 QFDTFSNSSFEGNVQLCGLVIQRSCPSQ 717

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248614|ref|NP_001239911.1| tyrosine-sulfated glycopeptide receptor 1-like precursor [Glycine max] gi|223452476|gb|ACM89565.1| leucine-rich repeat receptor-like kinase [Glycine max]

 Score =  589 bits (1519), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 327/674 (48%), Positives = 442/674 (65%), Gaps = 48/674 (7%)

Query: 19  IIIIILSCFSSFCQACNQIDQDSLLSLGFNISS----PGLNWSSSTDCCLWEGIKCDANG 74
           + + +LS F     +C+QID+ SLL+   NIS+    P L+WS S DCC WEGI CD + 
Sbjct: 6   VPLFLLSLFVFQVSSCDQIDKLSLLAFSGNISTSPPYPSLDWSDSLDCCSWEGITCDGDL 65

Query: 75  RVSHLWLPWKGLTGTISLSI-----------------GNLTH--------LSHLNLSHNR 109
           RV+HL LP +GLTG IS S+                 G L H        L  L+LS+NR
Sbjct: 66  RVTHLLLPSRGLTGFISPSLTNLSSLSHLNLSHNRLSGTLQHHFFSLLNHLLVLDLSYNR 125

Query: 110 LSGEFPSSL----SSNYIKIIDLSSNHFQGKIPSTIFR------LTQNLITFNVSNNSFT 159
           LSGE P  +    S   I+ +DLSSN F G +P+++           + ++ NVSNNS T
Sbjct: 126 LSGELPPFVGDISSDGVIQELDLSSNLFNGALPNSLLEHLAASAAGGSFVSLNVSNNSLT 185

Query: 160 GLISWSAWV----DSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDD 215
           G I  S +     ++  S+R LD S+N F G +  GLG+CS+L+ FRAGFN+L+G +P D
Sbjct: 186 GHIPTSLFCINDHNNSSSLRFLDYSSNEFDGAIQPGLGACSKLEKFRAGFNFLSGPIPSD 245

Query: 216 IYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVL 275
           ++ A SL ++SL  N ++G+I +GIV L++L +LELYSN  TG IP DIG+L+ LE L+L
Sbjct: 246 LFHAVSLTEISLPLNRLTGTIGDGIVGLSNLTVLELYSNHFTGSIPHDIGELSKLERLLL 305

Query: 276 HNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPI 335
           H N+L+G++P SL NC+NL +LNL+ N  EG++S FNFS  L+L  LDLG+N FTG LP 
Sbjct: 306 HVNNLTGTMPQSLMNCVNLVVLNLRVNVLEGNLSAFNFSGFLRLTTLDLGNNHFTGVLPP 365

Query: 336 TLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKV 395
           TL +CKSL+AV LA N+LEG+ISP I+ L+SLSFLS+S N L N+TGA+RIL G KNL  
Sbjct: 366 TLYACKSLSAVRLASNKLEGEISPKILELESLSFLSISTNKLRNVTGALRILRGLKNLST 425

Query: 396 LIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQ 455
           L++  NF +E +P +  +   +GF+ LQVLG   C   GQ+P W+ KLKKL+VLDLSFNQ
Sbjct: 426 LMLSKNFFNEMIPQDVNIIEPDGFQKLQVLGFGGCNFTGQIPGWLAKLKKLEVLDLSFNQ 485

Query: 456 LTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKG 515
           ++G +P +LG +S LF++D S NL++G FP E   LPAL  +Q  +K   +Y E  +F  
Sbjct: 486 ISGPIPPWLGKLSQLFYMDLSVNLLTGVFPVELTELPALASQQANDKVERTYFELPVFAN 545

Query: 516 SNNF-IGEYKKILTFHEQYTWKT---TASAAVSLLRL-LLHMLDLSHNNFSGNIPDQISQ 570
           +NN  + +Y ++          +     S  + + +L +LH LDL  NNFSG+IP Q S 
Sbjct: 546 ANNVSLLQYNQLSGLPPAIYLGSNHLNGSIPIEIGKLKVLHQLDLKKNNFSGSIPVQFSN 605

Query: 571 LTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNP 630
           LTNLE++DLS N LSGEIP SL+RLHFLS F+VA NNL+G IP+GGQFDTF +SSF GN 
Sbjct: 606 LTNLEKLDLSGNQLSGEIPDSLRRLHFLSFFSVAFNNLQGQIPTGGQFDTFSNSSFEGNV 665

Query: 631 DLCGAIVQRSCSVQ 644
            LCG ++QRSC  Q
Sbjct: 666 QLCGLVIQRSCPSQ 679

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	653
TAIR|locus:2020382	756	RLP3 "AT1G17250" [Arabidopsis	0.800	0.691	0.451	5.8e-114
TAIR|locus:2207056	1095	PSY1R "PSY1 receptor" [Arabido	0.793	0.473	0.444	2.2e-112
TAIR|locus:2020402	729	RLP2 "AT1G17240" [Arabidopsis	0.788	0.706	0.447	2.6e-109
TAIR|locus:2051628	1008	PSKR1 "phytosulfokin receptor	0.868	0.562	0.374	3.2e-88
TAIR|locus:2154709	1036	PSKR2 "phytosylfokine-alpha re	0.773	0.487	0.371	1.6e-79
TAIR|locus:2102499	964	AT3G56370 [Arabidopsis thalian	0.621	0.421	0.309	1.4e-63
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.773	0.442	0.307	6.4e-58
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.681	0.391	0.303	1.9e-57
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.764	0.418	0.277	9.8e-36
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.879	0.517	0.277	4.6e-55

TAIR|locus:2020382 RLP3 "AT1G17250" [Arabidopsis thaliana (taxid:3702)]

 Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
 Identities = 240/532 (45%), Positives = 319/532 (59%)

Query:   123 IKIIDLSSNHFQGKI-PSTIFRL-TQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLS 180
             I+I+DLSSN  QG+I PS+IF   T +LI+FNVS NSFTG I  S    S   +  LD S
Sbjct:   177 IRIVDLSSNFLQGEILPSSIFMQGTFDLISFNVSKNSFTGSIP-SFMCKSSPQLSKLDFS 235

Query:   181 NNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGI 240
              N FTG +P GLG C +L   +AGFN ++G +P DIY  + LEQL L  NH+SG I + I
Sbjct:   236 YNDFTGNIPQGLGRCLKLSVLQAGFNNISGEIPSDIYNLSELEQLFLPVNHLSGKINDDI 295

Query:   241 VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQ 300
              +LT L+ LELYSN L G IP DIG+L+ L+SL LH N           NC NL  LNL+
Sbjct:   296 THLTKLKSLELYSNHLGGEIPMDIGQLSRLQSLQLHINNITGTVPPSLANCTNLVKLNLR 355

Query:   301 SNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG 360
              N  EG +S  +FS    L +LDLG+N F+G  P  ++SCKSL+A+  A N+L GQISP 
Sbjct:   356 LNRLEGTLSELDFSRFQSLSILDLGNNSFSGDFPWRVHSCKSLSAMRFASNKLTGQISPH 415

Query:   361 IVAXXXXXXXXXXXXXXTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFK 420
             ++                NITGA+ IL GC+NL  L+I  NF +ET P +  L S++GF 
Sbjct:   416 VLELESLSILSLSDNKLMNITGALGILQGCRNLSTLLIGKNFYNETFPSDKDLISSDGFP 475

Query:   421 NLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLI 480
             NLQ+       L+G++P+W+ KLK L V+DLS NQL GS+P +LG    LF+ID S NL+
Sbjct:   476 NLQIFASGGSGLRGEIPAWLIKLKSLAVIDLSHNQLVGSIPGWLGTFPHLFYIDLSENLL 535

Query:   481 SGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIG--EYKKILTFHEQ-YTWKT 537
             SGE PK+  +L AL  ++  +    +YL+  +F   NN     +Y ++ +     Y  + 
Sbjct:   536 SGELPKDLFQLKALMSQKAYDATERNYLKLPVFVSPNNVTTHQQYNQLFSLPPGIYIRRN 595

Query:   538 TXXXXX---XXXXXXXXXXXXXHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKR 594
                                   HN  SG IP ++S+LT+LER+DLS NHLSG IP SL  
Sbjct:   596 NLKGSIPIEVGQLKVLHVLELSHNYLSGIIPHELSKLTSLERLDLSNNHLSGRIPWSLTS 655

Query:   595 LHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCSVQPR 646
             LH++S FNV  N+L G IP+G QFDTFP ++F+GNP LCG I+  SC    +
Sbjct:   656 LHYMSYFNVVNNSLDGPIPTGSQFDTFPQANFKGNPLLCGGILLTSCKASTK 707

GO:0004672 "protein kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2207056 PSY1R "PSY1 receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 234/527 (44%), Positives = 315/527 (59%)

Query:   123 IKIIDLSSNHFQGKI-PSTIF-RLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLS 180
             I+ +DLSSN  +G+I  S++F +   NL +FNVSNNSFTG I  S    +   +  LD S
Sbjct:   173 IQTVDLSSNLLEGEILSSSVFLQGAFNLTSFNVSNNSFTGSIP-SFMCTASPQLTKLDFS 231

Query:   181 NNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGI 240
              N F+G +   L  CSRL   RAGFN L+G +P +IY    LEQL L  N +SG I NGI
Sbjct:   232 YNDFSGDLSQELSRCSRLSVLRAGFNNLSGEIPKEIYNLPELEQLFLPVNRLSGKIDNGI 291

Query:   241 VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQ 300
               LT L +LELYSN + G IP+DIGKL+ L SL LH N           NC  L  LNL+
Sbjct:   292 TRLTKLTLLELYSNHIEGEIPKDIGKLSKLSSLQLHVNNLMGSIPVSLANCTKLVKLNLR 351

Query:   301 SNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG 360
              N   G +S  +FS    L +LDLG+N FTG  P T+ SCK +TA+  A N+L GQISP 
Sbjct:   352 VNQLGGTLSAIDFSRFQSLSILDLGNNSFTGEFPSTVYSCKMMTAMRFAGNKLTGQISPQ 411

Query:   361 IVAXXXXXXXXXXXXXXTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFK 420
             ++               TN+TGA+ IL GCK L  LI+  NF DET+P N     ++GF 
Sbjct:   412 VLELESLSFFTFSDNKMTNLTGALSILQGCKKLSTLIMAKNFYDETVPSNKDFLRSDGFP 471

Query:   421 NLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLI 480
             +LQ+ G+  C+L G++P+W+ KL++++V+DLS N+  G++P +LG +  LF++D S+N +
Sbjct:   472 SLQIFGIGACRLTGEIPAWLIKLQRVEVMDLSMNRFVGTIPGWLGTLPDLFYLDLSDNFL 531

Query:   481 SGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIG--EYKKIL----TFHEQYT 534
             +GE PKE  +L AL  ++  +    +YLE  +F   NN     +Y ++     T + +  
Sbjct:   532 TGELPKELFQLRALMSQKAYDATERNYLELPVFVNPNNVTTNQQYNQLSSLPPTIYIKRN 591

Query:   535 WKTTXXXXXXXXXXXXXXXXXXHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKR 594
               T                    NNFSG+IPD++S LTNLER+DLS N+LSG IP SL  
Sbjct:   592 NLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLTG 651

Query:   595 LHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSC 641
             LHFLS FNVA N L G IP+G QFDTFP ++F GNP LCG ++  SC
Sbjct:   652 LHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLTSC 698

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=IMP

GO:0009611 "response to wounding" evidence=IGI

GO:0031347 "regulation of defense response" evidence=IGI

TAIR|locus:2020402 RLP2 "AT1G17240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
 Identities = 236/527 (44%), Positives = 312/527 (59%)

Query:   123 IKIIDLSSNHFQGKI--PSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLS 180
             I+ +DLSSN  +G+I   S   + T NLI+FNVSNNSFTG I  S    S   +  LD S
Sbjct:   171 IQTLDLSSNLLEGEILRSSVYLQGTINLISFNVSNNSFTGPIP-SFMCRSSPQLSKLDFS 229

Query:   181 NNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGI 240
              N F+G +   LG C RL   +AGFN L+G +P +IY  + LEQL L  N ++G I N I
Sbjct:   230 YNDFSGHISQELGRCLRLTVLQAGFNNLSGVIPSEIYNLSELEQLFLPANQLTGKIDNNI 289

Query:   241 VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQ 300
               L  L  L LYSN L G IP DIG L++L SL LH N           NC  L  LNL+
Sbjct:   290 TRLRKLTSLALYSNHLEGEIPMDIGNLSSLRSLQLHINNINGTVPLSLANCTKLVKLNLR 349

Query:   301 SNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG 360
              N   G ++   FS L  L+VLDLG+N FTG+LP  + SCKSLTA+  A N+L G+ISP 
Sbjct:   350 VNQLGGGLTELEFSQLQSLKVLDLGNNSFTGALPDKIFSCKSLTAIRFAGNKLTGEISPQ 409

Query:   361 IVAXXXXXXXXXXXXXXTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFK 420
             ++               TNITGA+ IL GC+ L  LI+  NF DET+P  +   S +GF 
Sbjct:   410 VLELESLSFMGLSDNKLTNITGALSILQGCRKLSTLILAKNFYDETVPSKEDFLSPDGFP 469

Query:   421 NLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLI 480
              L++ G+  C+L+G++P+W+  L K++V+DLS N+  GS+P +LG +  LF++D S+NL+
Sbjct:   470 KLRIFGVGACRLRGEIPAWLINLNKVEVMDLSMNRFVGSIPGWLGTLPDLFYLDLSDNLL 529

Query:   481 SGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIG--EYKKILTFHEQ-YTWKT 537
             +GE PKE  +L AL  +  K   N +YLE  +F   NN     +Y K+ +F    Y  + 
Sbjct:   530 TGELPKELFQLRALMSQ--KITEN-NYLELPIFLNPNNVTTNQQYNKLYSFPPTIYIRRN 586

Query:   538 TXXXXXXXXXXXXXXXXXXH---NNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKR 594
                                    NN SG+IPD++S LTNLER+DLS N+LSG IP SL  
Sbjct:   587 NLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTN 646

Query:   595 LHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSC 641
             L+FLS FNVA N+L G IPS GQFDTFP ++F GNP LCG ++  SC
Sbjct:   647 LNFLSYFNVANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGVLLTSC 693

GO:0004672 "protein kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2051628 PSKR1 "phytosulfokin receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
 Identities = 222/593 (37%), Positives = 310/593 (52%)

Query:    54 LNWSSSTDCCLWEGIKCDAN--GRVSHLWLPWKGLTGTISLSIGXXXXXXXXXXXXXXXX 111
             +N SSSTDCC W GI C++N  GRV  L L  K L+G +S S+G                
Sbjct:    54 INSSSSTDCCNWTGITCNSNNTGRVIRLELGNKKLSGKLSESLGKLDEIRVLNLSRNFIK 113

Query:   112 GEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDS 170
                P S+ +   ++ +DLSSN   G IP++I  L   L +F++S+N F G +  S    +
Sbjct:   114 DSIPLSIFNLKNLQTLDLSSNDLSGGIPTSI-NLPA-LQSFDLSSNKFNGSLP-SHICHN 170

Query:   171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFN 230
                IR + L+ N F G    G G C  L+    G N LTG++P+D++    L  L +  N
Sbjct:   171 STQIRVVKLAVNYFAGNFTSGFGKCVLLEHLCLGMNDLTGNIPEDLFHLKRLNLLGIQEN 230

Query:   231 HISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKN 290
              +SGS+   I NL+SL  L++  N  +G IP    +L  L+  +   N           N
Sbjct:   231 RLSGSLSREIRNLSSLVRLDVSWNLFSGEIPDVFDELPQLKFFLGQTNGFIGGIPKSLAN 290

Query:   291 CINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLAR 350
               +L LLNL++N   G + + N + ++ L  LDLG+N F G LP  L  CK L  VNLAR
Sbjct:   291 SPSLNLLNLRNNSLSGRL-MLNCTAMIALNSLDLGTNRFNGRLPENLPDCKRLKNVNLAR 349

Query:   351 NQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAIRILMGCKNLKVLIIPLNFMDETMPDN 410
             N   GQ+                     NI+ A+ IL  CKNL  L++ LNF  E +PD+
Sbjct:   350 NTFHGQVPESFKNFESLSYFSLSNSSLANISSALGILQHCKNLTTLVLTLNFHGEALPDD 409

Query:   411 DRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSL 470
               L     F+ L+VL +A C+L G +P W+    +LQ+LDLS+N+LTG++P ++G+  +L
Sbjct:   410 SSLH----FEKLKVLVVANCRLTGSMPRWLSSSNELQLLDLSWNRLTGAIPSWIGDFKAL 465

Query:   471 FHIDFSNNLISGEFPKEFCRLPALTPEQDKN-KANESYLEFSLFKGSNNFIG--EYKKIL 527
             F++D SNN  +GE PK   +L +LT    +N   NE   +F  F   N      +Y +I 
Sbjct:   466 FYLDLSNNSFTGEIPKSLTKLESLT---SRNISVNEPSPDFPFFMKRNESARALQYNQIF 522

Query:   528 TFHEQYTWKTTXXXXXXXXXXXXXXXXXXH------NNFSGNIPDQISQLTNLERMDLSK 581
              F    T +                    H      N  SG+IP  +S +T+LE +DLS 
Sbjct:   523 GFPP--TIELGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDLSN 580

Query:   582 NHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCG 634
             N LSG IPVSL++L FLS F+VA NNL G IPSGGQF TFP+SSF  N  LCG
Sbjct:   581 NRLSGSIPVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESN-HLCG 632

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS;IDA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IMP;IDA

GO:0009611 "response to wounding" evidence=IGI

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0045087 "innate immune response" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IGI

TAIR|locus:2154709 PSKR2 "phytosylfokine-alpha receptor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 198/533 (37%), Positives = 275/533 (51%)

Query:   123 IKIIDLSSNHFQGKIPST-IFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSN 181
             I+ +++SSN   GK+    +F     L+  NVSNN F G I       S   I+ LDLS 
Sbjct:   138 IQSLNISSNSLSGKLSDVGVF---PGLVMLNVSNNLFEGEIH-PELCSSSGGIQVLDLSM 193

Query:   182 NRFTGPVPLGLGSCSR-LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGI 240
             NR  G +  GL +CS+ ++      N LTG LPD +Y+   LEQLSLS N++SG +   +
Sbjct:   194 NRLVGNLD-GLYNCSKSIQQLHIDSNRLTGQLPDYLYSIRELEQLSLSGNYLSGELSKNL 252

Query:   241 VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQ 300
              NL+ L+ L +  N  + +IP   G LT LE L + +N            C  L +L+L+
Sbjct:   253 SNLSGLKSLLISENRFSDVIPDVFGNLTQLEHLDVSSNKFSGRFPPSLSQCSKLRVLDLR 312

Query:   301 SNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG 360
             +N   G I++ NF+    L VLDL SN F+G LP +L  C  +  ++LA+N+  G+I   
Sbjct:   313 NNSLSGSINL-NFTGFTDLCVLDLASNHFSGPLPDSLGHCPKMKILSLAKNEFRGKIPDT 371

Query:   361 IVAXXXXXXXXXXXXXXTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFK 420
                               + +  + +L  C+NL  LI+  NF+ E +P+N       GF 
Sbjct:   372 FKNLQSLLFLSLSNNSFVDFSETMNVLQHCRNLSTLILSKNFIGEEIPNN-----VTGFD 426

Query:   421 NLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLI 480
             NL +L L  C L+GQ+PSW+   KKL+VLDLS+N   G++P ++G M SLF+IDFSNN +
Sbjct:   427 NLAILALGNCGLRGQIPSWLLNCKKLEVLDLSWNHFYGTIPHWIGKMESLFYIDFSNNTL 486

Query:   481 SGEFP------KEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYT 534
             +G  P      K   RL     +   +     Y++ +  K SN     Y ++  F     
Sbjct:   487 TGAIPVAITELKNLIRLNGTASQMTDSSGIPLYVKRN--KSSNGL--PYNQVSRFPPSIY 542

Query:   535 WKTTXXXXXXX----XXXXXXXXXXXHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPV 590
                                        NNF+G IPD IS L NLE +DLS NHL G IP+
Sbjct:   543 LNNNRLNGTILPEIGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPL 602

Query:   591 SLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCSV 643
             S + L FLS F+VA N L G+IPSGGQF +FP SSF GN  LC AI    C V
Sbjct:   603 SFQSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSSFEGNLGLCRAI-DSPCDV 654

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IMP

GO:0009611 "response to wounding" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2102499 AT3G56370 [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
 Identities = 132/426 (30%), Positives = 197/426 (46%)

Query:    63 CLWEGIKCDAN-GRVSHLWLPWKGLTGTISLSIGXXXXXXXXXXXXXXXXGEF-PSSLSS 120
             C W G+KC     RV+ L L    L+G I   +                 G   P+ L S
Sbjct:    57 CSWNGVKCHPRTNRVTELNLDGFSLSGRIGRGLLQLQFLHKLSLSNNNLTGIINPNMLLS 116

Query:   121 NY-IKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDL 179
                +K++DLSSN   G +P   FR   +L   +++ N  TG I  S  + S  S+  L+L
Sbjct:   117 LVNLKVVDLSSNGLSGSLPDEFFRQCGSLRVLSLAKNKLTGKIPVS--ISSCSSLAALNL 174

Query:   180 SNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNG 239
             S+N F+G +PLG+ S + L++     N L G  P+ I    +L  L LS N +SG I + 
Sbjct:   175 SSNGFSGSMPLGIWSLNTLRSLDLSRNELEGEFPEKIDRLNNLRALDLSRNRLSGPIPSE 234

Query:   240 IVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNL 299
             I +   L+ ++L  NSL+G +P    +L+   SL L  N              +L  L+L
Sbjct:   235 IGSCMLLKTIDLSENSLSGSLPNTFQQLSLCYSLNLGKNALEGEVPKWIGEMRSLETLDL 294

Query:   300 QSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISP 359
               N F G +   +   LL L+VL+   N   GSLP++  +C +L A++L+ N L G++  
Sbjct:   295 SMNKFSGQVPD-SIGNLLALKVLNFSGNGLIGSLPVSTANCINLLALDLSGNSLTGKLPM 353

Query:   360 GIVAXXXXXXXXXXXXXXTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGF 419
              +                 N TG      G K ++VL +  N     +            
Sbjct:   354 WLFQDGSRDVSALKND---NSTG------GIKKIQVLDLSHNAFSGEIG-----AGLGDL 399

Query:   420 KNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNL 479
             ++L+ L L+   L G +PS IG+LK L VLD+S NQL G +PR  G   SL  +   NNL
Sbjct:   400 RDLEGLHLSRNSLTGPIPSTIGELKHLSVLDVSHNQLNGMIPRETGGAVSLEELRLENNL 459

Query:   480 ISGEFP 485
             + G  P
Sbjct:   460 LEGNIP 465

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 6.4e-58, Sum P(2) = 6.4e-58
 Identities = 165/537 (30%), Positives = 245/537 (45%)

Query:    86 LTGTISLSIGXXXXXXXXXXXXXXXXGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRL 144
             LTGT+  S+G                G+ P SLS    ++ + L+SN   GKIP  I + 
Sbjct:   117 LTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKC 176

Query:   145 TQ--NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFR 202
             ++  +LI F+   N  TG I       S   +  +   N   +G +P  +G CS L    
Sbjct:   177 SKLKSLILFD---NLLTGSIPTELGKLSGLEVIRIG-GNKEISGQIPSEIGDCSNLTVLG 232

Query:   203 AGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPR 262
                  ++G+LP  +     LE LS+    ISG I + + N + L  L LY NSL+G IPR
Sbjct:   233 LAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPR 292

Query:   263 DIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEGDI--SVFNFSTLLKLR 320
             +IG+LT LE L L  N           NC NL +++L  N   G I  S+   S L +  
Sbjct:   293 EIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFM 352

Query:   321 VLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVAXXXXXXXXXXXXXXTNI 380
             + D   N F+GS+P T+++C SL  + L +NQ+ G I P  +                 +
Sbjct:   353 ISD---NKFSGSIPTTISNCSSLVQLQLDKNQISGLI-PSELGTLTKLTLFFAWS--NQL 406

Query:   381 TGAIRI-LMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSW 439
              G+I   L  C +L+ L +  N +  T+P    +      +NL  L L    L G +P  
Sbjct:   407 EGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFM-----LRNLTKLLLISNSLSGFIPQE 461

Query:   440 IGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQD 499
             IG    L  L L FN++TG +P  +G++  +  +DFS+N + G+ P E      L   Q 
Sbjct:   462 IGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSEL---QM 518

Query:   500 KNKANESYLEFSLFKGSNNFIGEYKKILTFH-EQYTWKTTXXXXXXXXXXXXXXXXXXHN 558
              + +N S LE SL    ++  G   ++L     Q++ K                     N
Sbjct:   519 IDLSNNS-LEGSLPNPVSSLSG--LQVLDVSANQFSGKIPASLGRLVSLNKLILSK---N 572

Query:   559 NFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLS-AFNVAENNLRGSIPS 614
              FSG+IP  +   + L+ +DL  N LSGEIP  L  +  L  A N++ N L G IPS
Sbjct:   573 LFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPS 629

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 1.9e-57, Sum P(2) = 1.9e-57
 Identities = 143/471 (30%), Positives = 215/471 (45%)

Query:    35 NQIDQDSLLSLGFNISSP-GL--NWSSSTDC--CLWEGIKCDANGRVSHLWLPWKGLTGT 89
             +Q + D+L +   N+  P G   +W  ST    C W G+ C  N RV+ + LP   L+G 
Sbjct:    25 SQAEIDALTAFKLNLHDPLGALTSWDPSTPAAPCDWRGVGC-TNHRVTEIRLPRLQLSGR 83

Query:    90 ISLSIGXXXXXXXXXXXXXXXXGEFPSSLS-SNYIKIIDLSSNHFQGKIPSTIFRLTQNL 148
             IS  I                 G  P+SL+    +  + L  N   GK+P  +  LT +L
Sbjct:    84 ISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLT-SL 142

Query:   149 ITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYL 208
               FNV+ N  +G I     V    S++ LD+S+N F+G +P GL + ++L+     +N L
Sbjct:   143 EVFNVAGNRLSGEIP----VGLPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQL 198

Query:   209 TGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLT 268
             TG +P  +    SL+ L L FN + G++ + I N +SL  L    N + G+IP   G L 
Sbjct:   199 TGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALP 258

Query:   269 NLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEGDI---SVFNFSTLLKLRVLDLG 325
              LE L L NN              +LT++ L  N F   +   +  N  T   L+VLDL 
Sbjct:   259 KLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRT--GLQVLDLQ 316

Query:   326 SNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAIR 385
              N  +G  P+ L +  SL  ++++ N   G+I P I                 ++TG I 
Sbjct:   317 ENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDI---GNLKRLEELKLANNSLTGEIP 373

Query:   386 I-LMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLK 444
             + +  C +L VL    N +   +P+          K L+VL L      G VPS +  L+
Sbjct:   374 VEIKQCGSLDVLDFEGNSLKGQIPE-----FLGYMKALKVLSLGRNSFSGYVPSSMVNLQ 428

Query:   445 KLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALT 495
             +L+ L+L  N L GS P  L  ++SL  +D S N  SG  P     L  L+
Sbjct:   429 QLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLS 479

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 9.8e-36, P = 9.8e-36
 Identities = 151/544 (27%), Positives = 236/544 (43%)

Query:   112 GEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDS 170
             G  P  LS    +  +DLS NHF G +P + F     L + +VSNNS +G I     +  
Sbjct:   127 GLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPE--IGK 184

Query:   171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFN 230
               ++ +L +  N F+G +P  +G+ S LK F A   +  G LP +I     L +L LS+N
Sbjct:   185 LSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYN 244

Query:   231 HISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKN 290
              +  SI      L +L IL L S  L GLIP ++G   +L+SL+L  N            
Sbjct:   245 PLKCSIPKSFGELHNLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSE 304

Query:   291 CINLTLLNLQSNFFEGDISVFNFSTLLKLRVLD---LGSNLFTGSLPITLNSCKSLTAVN 347
              I L   + + N   G +     S + K +VLD   L +N F+G +P  +  C  L  ++
Sbjct:   305 -IPLLTFSAERNQLSGSLP----SWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLS 359

Query:   348 LARNQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAIR-ILMGCKNLKVLIIPLNFMDET 406
             LA N L G I   +                  ++G I  +  GC +L  L++  N ++ +
Sbjct:   360 LASNLLSGSIPRELCGSGSLEAIDLSGNL---LSGTIEEVFDGCSSLGELLLTNNQINGS 416

Query:   407 MPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGN 466
             +P++  L        L  L L      G++P  + K   L     S+N+L G +P  +GN
Sbjct:   417 IPED--LWKLP----LMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGN 470

Query:   467 MSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNF-IGEYKK 525
              +SL  +  S+N ++GE P+E  +L +L+        N   L  ++F+G     +G+   
Sbjct:   471 AASLKRLVLSDNQLTGEIPREIGKLTSLSV------LN---LNANMFQGKIPVELGDCTS 521

Query:   526 ILTFHEQYTWKTTXXXXXXXXXXXXXXXXXXHNNFSGNIPDQIS---------QLTNLER 576
             + T                            +NN SG+IP + S          L+ L+ 
Sbjct:   522 LTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQH 581

Query:   577 ---MDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG-GQFDTFPSSSFRGNPDL 632
                 DLS N LSG IP  L     L   +++ N+L G IP+   +          GN  L
Sbjct:   582 HGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNA-L 640

Query:   633 CGAI 636
              G+I
Sbjct:   641 TGSI 644

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 487 (176.5 bits), Expect = 4.6e-55, Sum P(2) = 4.6e-55
 Identities = 171/616 (27%), Positives = 268/616 (43%)

Query:    26 CFSSFCQACNQIDQD--SLLSLGFNISS-PG---LNWSSSTDC-CLWEGIKCDANGRVSH 78
             C +S   A   ++ D  +LLSL  + +S P     +W++S    C W G++CD    V  
Sbjct:    13 CSTSSIYAAFALNSDGAALLSLTRHWTSIPSDITQSWNASDSTPCSWLGVECDRRQFVDT 72

Query:    79 LWLPWKGLTGTISLSIGXXXXXXXXXXXXXXXXGEFPSSLSS-NYIKIIDLSSNHFQGKI 137
             L L   G++G     I                 G  PS L + + ++ IDLSSN F G I
Sbjct:    73 LNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNI 132

Query:   138 PSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLD---LSNNRFTGPVPLGLGS 194
             P T+  L QNL   ++  NS  G      + +S  SI HL+    + N   G +P  +G+
Sbjct:   133 PDTLGAL-QNLRNLSLFFNSLIG-----PFPESLLSIPHLETVYFTGNGLNGSIPSNIGN 186

Query:   195 CSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSN 254
              S L T     N  +G +P  +   T+L++L L+ N++ G++   + NL +L  L++ +N
Sbjct:   187 MSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNN 246

Query:   255 SLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFS 314
             SL G IP D      ++++ L NN           NC +L      S    G I    F 
Sbjct:   247 SLVGAIPLDFVSCKQIDTISLSNNQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSC-FG 305

Query:   315 TLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVAXXXXXXXXXXX 374
              L KL  L L  N F+G +P  L  CKS+  + L +NQLEG+I PG +            
Sbjct:   306 QLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEI-PGELGMLSQLQYLHLY 364

Query:   375 XXXTNITGAIRI-LMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLK 433
                 N++G + + +   ++L+ L +  N +   +P +  +T     K L  L L E    
Sbjct:   365 T--NNLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVD--MTE---LKQLVSLALYENHFT 417

Query:   434 GQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEF--CR- 490
             G +P  +G    L+VLDL+ N  TG +P  L +   L  +    N + G  P +   C  
Sbjct:   418 GVIPQDLGANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGGCST 477

Query:   491 LPALTPEQDKNKAN-ESYLEFS--LF--KGSNNF-------IGEYKKILTFHEQYTWKTT 538
             L  L  E++  +     ++E    LF     NNF       +G  K +   +      + 
Sbjct:   478 LERLILEENNLRGGLPDFVEKQNLLFFDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSG 537

Query:   539 XXXXXXXXXXXXXXXXXXHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFL 598
                               HN   G +P ++S    L  +D S N L+G IP +L  L  L
Sbjct:   538 SIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTEL 597

Query:   599 SAFNVAENNLRGSIPS 614
             +  ++ EN+  G IP+
Sbjct:   598 TKLSLGENSFSGGIPT 613

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033978001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (1078 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	653
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-81
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  275 bits (704), Expect = 8e-81
 Identities = 211/649 (32%), Positives = 327/649 (50%), Gaps = 85/649 (13%)

Query: 19  IIIIILSCFSSFCQACNQIDQDSLLSLGFNISSPG---LNWSSSTDCCLWEGIKCDANGR 75
           I ++     +       +++   LLS   +I+ P     NW+SS D CLW+GI C+ + R
Sbjct: 13  IFMLFFLFLNFSMLHAEELEL--LLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSR 70

Query: 76  VSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSL--SSNYIKIIDLSSNHF 133
           V  + L  K ++G IS +I  L ++  +NLS+N+LSG  P  +  +S+ ++ ++LS+N+F
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 134 QGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDL-------------- 179
            G IP        NL T ++SNN  +G I     + SF S++ LDL              
Sbjct: 131 TGSIPRGSI---PNLETLDLSNNMLSGEIP--NDIGSFSSLKVLDLGGNVLVGKIPNSLT 185

Query: 180 ----------SNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSF 229
                     ++N+  G +P  LG    LK    G+N L+G +P +I   TSL  L L +
Sbjct: 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245

Query: 230 NHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLK 289
           N+++G I + + NL +L+ L LY N L+G IP  I  L  L SL L +NSLSG +P  + 
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305

Query: 290 NCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLA 349
              NL +L+L SN F G I V   ++L +L+VL L SN F+G +P  L    +LT ++L+
Sbjct: 306 QLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364

Query: 350 RNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAI-RILMGCKNLKVLIIPLNFMDETMP 408
            N L G+I  G+ +  +L  L L +NSL    G I + L  C++L+ + +  N     +P
Sbjct: 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLE---GEIPKSLGACRSLRRVRLQDNSFSGELP 421

Query: 409 DNDRLTSANGFKNLQV---LGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLG 465
                   + F  L +   L ++   L+G++ S    +  LQ+L L+ N+  G +P   G
Sbjct: 422 --------SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

Query: 466 NMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKK 525
           +   L ++D S N  SG  P++   L  L             ++  L +  N   GE   
Sbjct: 474 S-KRLENLDLSRNQFSGAVPRKLGSLSEL-------------MQLKLSE--NKLSGEIPD 517

Query: 526 ILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLS 585
            L+  ++                 L  LDLSHN  SG IP   S++  L ++DLS+N LS
Sbjct: 518 ELSSCKK-----------------LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560

Query: 586 GEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCG 634
           GEIP +L  +  L   N++ N+L GS+PS G F    +S+  GN DLCG
Sbjct: 561 GEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.5 bits (183), Expect = 7e-14
 Identities = 35/81 (43%), Positives = 53/81 (65%)

Query: 208 LTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKL 267
           L G +P+DI     L+ ++LS N I G+I   + ++TSL +L+L  NS  G IP  +G+L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 268 TNLESLVLHNNSLSGSLPSSL 288
           T+L  L L+ NSLSG +P++L
Sbjct: 490 TSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 550 LHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR 609
           L  ++LS N+  GNIP  +  +T+LE +DLS N  +G IP SL +L  L   N+  N+L 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 610 GSIPS--GGQFDTFPSSSFRGNPDLCGAIVQRSC 641
           G +P+  GG+     S +F  N  LCG    R+C
Sbjct: 504 GRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 8e-10
 Identities = 47/149 (31%), Positives = 64/149 (42%), Gaps = 36/149 (24%)

Query: 65  WEGIKC--DANGR---VSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLS 119
           W G  C  D+      +  L L  +GL G I   I  L HL  +NLS N + G  P SL 
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 120 S-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLD 178
           S   ++++DLS N F G IP ++ +LT                           S+R L+
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLT---------------------------SLRILN 496

Query: 179 LSNNRFTGPVPLGLGSCSRLKTFRAGFNY 207
           L+ N  +G VP  LG        RA FN+
Sbjct: 497 LNGNSLSGRVPAALGG---RLLHRASFNF 522

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 24/67 (35%), Positives = 42/67 (62%)

Query: 419 FKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478
            ++LQ + L+   ++G +P  +G +  L+VLDLS+N   GS+P  LG ++SL  ++ + N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 479 LISGEFP 485
            +SG  P
Sbjct: 501 SLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 2e-09
 Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 5/101 (4%)

Query: 165 SAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQ 224
             W      I  L L N    G +P  +     L++     N + G++P  + + TSLE 
Sbjct: 416 GKWF-----IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470

Query: 225 LSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIG 265
           L LS+N  +GSI   +  LTSLRIL L  NSL+G +P  +G
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 6e-09
 Identities = 34/95 (35%), Positives = 48/95 (50%)

Query: 214 DDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESL 273
           D       ++ L L    + G I N I  L  L+ + L  NS+ G IP  +G +T+LE L
Sbjct: 412 DSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL 471

Query: 274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDI 308
            L  NS +GS+P SL    +L +LNL  N   G +
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 3e-08
 Identities = 27/70 (38%), Positives = 44/70 (62%)

Query: 425 LGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEF 484
           LGL    L+G +P+ I KL+ LQ ++LS N + G++P  LG+++SL  +D S N  +G  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 485 PKEFCRLPAL 494
           P+   +L +L
Sbjct: 483 PESLGQLTSL 492

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 3e-08
 Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 270 LESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF 329
           ++ L L N  L G +P+ +    +L  +NL  N   G+I   +  ++  L VLDL  N F
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSF 478

Query: 330 TGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA---LKSLSFLSLSNNSLTNITG 382
            GS+P +L    SL  +NL  N L G++ P  +    L   SF    N  L  I G
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRV-PAALGGRLLHRASFNFTDNAGLCGIPG 533

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 81/265 (30%), Positives = 121/265 (45%), Gaps = 14/265 (5%)

Query: 89  TISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNL 148
             S ++ NL  L  L+L+ NRL       L    +  +DL +N+    IP  I  L  NL
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNL 142

Query: 149 ITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYL 208
              ++S+N    L S    + +  ++++LDLS N  +  +P  L + S L       N  
Sbjct: 143 KELDLSDNKIESLPS---PLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGN-K 197

Query: 209 TGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLT 268
              LP +I   ++LE+L LS N I   + + + NL +L  LEL +N L   +P  IG L+
Sbjct: 198 ISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLS 255

Query: 269 NLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
           NLE+L L NN +S    SSL +  NL  L+L  N      +      LL L +  L + L
Sbjct: 256 NLETLDLSNNQISS--ISSLGSLTNLRELDLSGNSL---SNALPLIALLLLLLELLLNLL 310

Query: 329 FTGSLPITLNSCKSLTAVNLARNQL 353
            T    + L     L   N+  N  
Sbjct: 311 LT-LKALELKLNSILLNNNILSNGE 334

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 3e-07
 Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 86  LTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRL 144
           + G I  S+G++T L  L+LS+N  +G  P SL     ++I++L+ N   G++P+ +   
Sbjct: 454 IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Query: 145 TQNLITFNVSNNS 157
             +  +FN ++N+
Sbjct: 514 LLHRASFNFTDNA 526

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 553 LDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSI 612
           L L +    G IP+ IS+L +L+ ++LS N + G IP SL  +  L   +++ N+  GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 613 P-SGGQFDTFPSSSFRGN 629
           P S GQ  +    +  GN
Sbjct: 483 PESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 84/343 (24%), Positives = 131/343 (38%), Gaps = 47/343 (13%)

Query: 212 LPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLE 271
           LP  +    SL+ LS S        +N + NL  L  L+L  N L   I   + +LTNL 
Sbjct: 62  LPSSLSRLLSLDLLSPSGISSLDGSENLL-NLLPLPSLDLNLNRLRSNISE-LLELTNLT 119

Query: 272 SLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG 331
           SL L NN+++   P       NL  L+L  N  E                          
Sbjct: 120 SLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-------------------------- 153

Query: 332 SLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCK 391
           SLP  L +  +L  ++L+ N L   +   +  L +L+ L LS N ++++   I       
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIE---LLS 209

Query: 392 NLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDL 451
            L+ L +  N + E       L+S +  KNL  L L+  KL+  +P  IG L  L+ LDL
Sbjct: 210 ALEELDLSNNSIIEL------LSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDL 262

Query: 452 SFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPK----EFCRLPALTPEQDKNKA--NE 505
           S NQ++      LG++++L  +D S N +S   P            L             
Sbjct: 263 SNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKL 320

Query: 506 SYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRL 548
           + +  +    SN      + +          T  +A       
Sbjct: 321 NSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLN 363

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 31/121 (25%)

Query: 345 AVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMD 404
            + L    L G I   I  L+ L  ++LS NS   I G I   +G               
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNS---IRGNIPPSLG--------------- 463

Query: 405 ETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFL 464
            ++             +L+VL L+     G +P  +G+L  L++L+L+ N L+G VP  L
Sbjct: 464 -SIT------------SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Query: 465 G 465
           G
Sbjct: 511 G 511

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 56/240 (23%), Positives = 93/240 (38%), Gaps = 34/240 (14%)

Query: 173 SIRHLDLSNN------RFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP---DDIYTATSLE 223
           S++ L LS N      R    +  GL     L+      N L        + +  ++SL+
Sbjct: 52  SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQ 111

Query: 224 QLSLSFNHISGSIKNGIV-----NLTSLRILELYSNSLTGLIPRDIGKL----TNLESLV 274
           +L L+ N +       +         +L  L L  N L G     + K      +L+ L 
Sbjct: 112 ELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171

Query: 275 LHNNSLSG----SLPSSLKNCINLTLLNLQSNFF--EGDISVFN-FSTLLKLRVLDLGSN 327
           L NN +      +L   LK   NL +L+L +N    EG  ++    ++L  L VL+LG N
Sbjct: 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231

Query: 328 LFTGS-----LPITLNSCKSLTAVNLARNQLE----GQISPGIVALKSLSFLSLSNNSLT 378
             T +         L+   SL  ++L+ N +       ++  +   +SL  L L  N   
Sbjct: 232 NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 28/60 (46%)

Query: 421 NLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLI 480
           NL+ L L+  +L          L  L+VLDLS N LT   P     + SL  +D S N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 245 SLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN 302
           +L+ L+L +N LT +       L NL+ L L  N+L+   P +     +L  L+L  N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 75/288 (26%), Positives = 117/288 (40%), Gaps = 49/288 (17%)

Query: 314 STLLKLRVLDLGSNLFTGSLPI--TLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLS 371
           S+L +L  LDL S     SL     L +   L +++L  N+L   IS  ++ L +L+ L 
Sbjct: 64  SSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLD 122

Query: 372 LSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECK 431
           L NN++T+I   I +L    NLK L +  N            +      NL+ L L+   
Sbjct: 123 LDNNNITDIPPLIGLLK--SNLKELDLSDN------KIESLPSPLRNLPNLKNLDLSFND 174

Query: 432 LKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRL 491
           L   +P  +  L  L  LDLS N+++  +P  +  +S+L  +D SNN I          +
Sbjct: 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI----------I 222

Query: 492 PALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLH 551
             L+   +    +   L  +  +     IG    + T                       
Sbjct: 223 ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLET----------------------- 259

Query: 552 MLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLS 599
            LDLS+N    +    +  LTNL  +DLS N LS  +P+    L  L 
Sbjct: 260 -LDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLE 304

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 42.6 bits (100), Expect = 7e-04
 Identities = 81/291 (27%), Positives = 119/291 (40%), Gaps = 67/291 (23%)

Query: 238 NGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKN------- 290
           +G+ +LT LR ++L  +     IP D+   TNLE+L L + S    LPSS++        
Sbjct: 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686

Query: 291 ----CINLTLL----NLQSNF---FEG--------DISVFNFSTLL--KLRVLDLGSNLF 329
               C NL +L    NL+S +     G        DIS  N S L   +  + +  SNL 
Sbjct: 687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIST-NISWLDLDETAIEEFPSNLR 745

Query: 330 TGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALK-SLSFLSLSNN-SLTNITGAIRIL 387
             +L   L  C+  +     R Q    ++P +  L  SL+ L LS+  SL  +  +I+ L
Sbjct: 746 LENL-DELILCEMKSEKLWERVQP---LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL 801

Query: 388 --------MGCKNLKVLIIPLNF-----MD-------ETMPDNDRLTSANGFK-NLQVLG 426
                     C NL+ L   +N      +D        T PD     S N    NL   G
Sbjct: 802 HKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRTG 857

Query: 427 LAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSN 477
           + E      VP WI K   L  LD++       V   +  +  L  +DFS+
Sbjct: 858 IEE------VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902

syringae 6; Provisional. Length = 1153

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 221 SLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSL 280
           +L+ L LS N ++         L +L++L+L  N+LT + P     L +L SL L  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 18/60 (30%), Positives = 25/60 (41%)

Query: 318 KLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSL 377
            L+ LDL +N  T           +L  ++L+ N L          L SL  L LS N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	653
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
PLN03150	623	hypothetical protein; Provisional	99.61
PLN03150	623	hypothetical protein; Provisional	99.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.29
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.12
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.96
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.93
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.89
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.7
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.67
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.52
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.49
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.43
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.36
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.33
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.31
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.3
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.11
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.9
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.81
PRK15386	426	type III secretion protein GogB; Provisional	97.78
KOG4341	483	consensus F-box protein containing LRR [General fu	97.72
PRK15386	426	type III secretion protein GogB; Provisional	97.68
KOG4341	483	consensus F-box protein containing LRR [General fu	97.68
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.65
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.47
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.43
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.09
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.05
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.7
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.52
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.51
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.42
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.31
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.12
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.05
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.55
KOG4308	478	consensus LRR-containing protein [Function unknown	95.47
KOG4308	478	consensus LRR-containing protein [Function unknown	93.39
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.76
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.31
smart00370	26	LRR Leucine-rich repeats, outliers.	89.31
smart00370	26	LRR Leucine-rich repeats, outliers.	88.97
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.97
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.93
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.5
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.4
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.13

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.4e-71  Score=655.30  Aligned_cols=585  Identities=34%  Similarity=0.504  Sum_probs=521.2

Q ss_pred             CHHhHHHHHHhhhcCCCCC---CCCCCCCCCccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCC
Q 041562           35 NQIDQDSLLSLGFNISSPG---LNWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLS  111 (653)
Q Consensus        35 ~~~~~~~ll~~k~~~~~~~---~~W~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~  111 (653)
                      .++|++||++||+++.++.   .+|+.+.+||.|.||+|+..++|+.|+|++++++|.+++.+..+++|++|+|++|.+.
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~  106 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS  106 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence            4689999999999997654   6898788999999999998889999999999999999999999999999999999999


Q ss_pred             CCCCcccc-C-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCC
Q 041562          112 GEFPSSLS-S-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP  189 (653)
Q Consensus       112 ~~~p~~~~-~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  189 (653)
                      +.+|..+. . ++|++|+|++|+++|.+|..   .+++|++|++++|.+.+.+|..+.  .+++|++|++++|.+.+.+|
T Consensus       107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~l~~L~~L~Ls~n~~~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p  181 (968)
T PLN00113        107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIPNLETLDLSNNMLSGEIPNDIG--SFSSLKVLDLGGNVLVGKIP  181 (968)
T ss_pred             CcCChHHhccCCCCCEEECcCCccccccCcc---ccCCCCEEECcCCcccccCChHHh--cCCCCCEEECccCcccccCC
Confidence            99998765 3 99999999999999999863   488999999999999998887765  79999999999999999999


Q ss_pred             ccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCC
Q 041562          190 LGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTN  269 (653)
Q Consensus       190 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  269 (653)
                      ..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++
T Consensus       182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  261 (968)
T PLN00113        182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN  261 (968)
T ss_pred             hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEcc
Q 041562          270 LESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLA  349 (653)
Q Consensus       270 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  349 (653)
                      |++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus       262 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  340 (968)
T PLN00113        262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW  340 (968)
T ss_pred             CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence            99999999999999999999999999999999999988885 78899999999999999999999999999999999999


Q ss_pred             CccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccC
Q 041562          350 RNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAE  429 (653)
Q Consensus       350 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~  429 (653)
                      +|.+.+.+|..++.+++|+.|++++|+++...  ...+..+++|+.++++.|.+.+.+|...     ..+++|+.|++++
T Consensus       341 ~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~--p~~~~~~~~L~~L~l~~n~l~~~~p~~~-----~~~~~L~~L~L~~  413 (968)
T PLN00113        341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI--PEGLCSSGNLFKLILFSNSLEGEIPKSL-----GACRSLRRVRLQD  413 (968)
T ss_pred             CCCCcCcCChHHhCCCCCcEEECCCCeeEeeC--ChhHhCcCCCCEEECcCCEecccCCHHH-----hCCCCCCEEECcC
Confidence            99999999999999999999999999987422  2345677899999999999988887644     3678999999999


Q ss_pred             CcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccc
Q 041562          430 CKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLE  509 (653)
Q Consensus       430 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~  509 (653)
                      |.+++.+|..+..++.|+.|++++|++.+.+|..+..+++|++|++++|++.+.+|..+ ..+.|+.++++++......+
T Consensus       414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~  492 (968)
T PLN00113        414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVP  492 (968)
T ss_pred             CEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccC
Confidence            99999999999999999999999999999999888899999999999999998888765 35778888877654332211


Q ss_pred             cccccCCccccccccccccccccc-ceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeec
Q 041562          510 FSLFKGSNNFIGEYKKILTFHEQY-TWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEI  588 (653)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i  588 (653)
                      .. +.       ....+..+.... .+.+.+|..++.++ +|++|+|++|.+++.+|..|+.+++|++|||++|+++|.+
T Consensus       493 ~~-~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  563 (968)
T PLN00113        493 RK-LG-------SLSELMQLKLSENKLSGEIPDELSSCK-KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI  563 (968)
T ss_pred             hh-hh-------hhhccCEEECcCCcceeeCChHHcCcc-CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence            10 00       011111222221 26788999999999 9999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCCCCC---CCCCC
Q 041562          589 PVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIV---QRSCS  642 (653)
Q Consensus       589 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~---~~~c~  642 (653)
                      |..+..+++|++|++++|+++|.+|..++|.++.+.+|.||+++||.+.   .++|.
T Consensus       564 p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~  620 (968)
T PLN00113        564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCK  620 (968)
T ss_pred             ChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCc
Confidence            9999999999999999999999999999999999999999999998653   24674

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.9e-57  Score=531.21  Aligned_cols=514  Identities=32%  Similarity=0.465  Sum_probs=464.2

Q ss_pred             CCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCE
Q 041562           98 THLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRH  176 (653)
Q Consensus        98 ~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~  176 (653)
                      .+++.|||++|.++|.++..+.. ++|++|+|++|++.|.+|..++..+++|++|++++|.+++.+|..    .+++|++
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~----~l~~L~~  144 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG----SIPNLET  144 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc----ccCCCCE
Confidence            57999999999999999988877 999999999999999999999988999999999999999988753    5889999


Q ss_pred             EEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcC
Q 041562          177 LDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSL  256 (653)
Q Consensus       177 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l  256 (653)
                      |++++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|++
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCcc
Q 041562          257 TGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPIT  336 (653)
Q Consensus       257 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~  336 (653)
                      .+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.+|..
T Consensus       225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~  303 (968)
T PLN00113        225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPEL  303 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeeccCCChh
Confidence            999999999999999999999999999999999999999999999999988875 7889999999999999999999999


Q ss_pred             CcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCC
Q 041562          337 LNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSA  416 (653)
Q Consensus       337 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  416 (653)
                      +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++...  ...+..+++|+.|+++.|.+.+.+|....    
T Consensus       304 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~----  377 (968)
T PLN00113        304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI--PKNLGKHNNLTVLDLSTNNLTGEIPEGLC----  377 (968)
T ss_pred             HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC--ChHHhCCCCCcEEECCCCeeEeeCChhHh----
Confidence            999999999999999999999999999999999999999987422  23567889999999999999988886543    


Q ss_pred             CCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCc
Q 041562          417 NGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTP  496 (653)
Q Consensus       417 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  496 (653)
                       .+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++.|+.|++++|++++.+|..+..+++|+.
T Consensus       378 -~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  456 (968)
T PLN00113        378 -SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM  456 (968)
T ss_pred             -CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence             5688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccccccccCCcccccccccccccccc-cceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCC
Q 041562          497 EQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQ-YTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLE  575 (653)
Q Consensus       497 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  575 (653)
                      +++.++......+.  ...       ...+..+... ..+.+.+|..++.++ .|+.|+|++|.+.+.+|+.++++++|+
T Consensus       457 L~L~~n~~~~~~p~--~~~-------~~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~  526 (968)
T PLN00113        457 LSLARNKFFGGLPD--SFG-------SKRLENLDLSRNQFSGAVPRKLGSLS-ELMQLKLSENKLSGEIPDELSSCKKLV  526 (968)
T ss_pred             EECcCceeeeecCc--ccc-------cccceEEECcCCccCCccChhhhhhh-ccCEEECcCCcceeeCChHHcCccCCC
Confidence            99887654322211  000       0112222222 126678899999999 999999999999999999999999999


Q ss_pred             eEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCC-CCCCCcCCCccCCCCCCC
Q 041562          576 RMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG-GQFDTFPSSSFRGNPDLC  633 (653)
Q Consensus       576 ~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lc  633 (653)
                      +|+|++|.++|.+|..+..+++|++|++++|+++|.+|.. ..+..+....+.+|+..+
T Consensus       527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             EEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            9999999999999999999999999999999999999975 446667778888998765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=6.5e-41  Score=322.96  Aligned_cols=481  Identities=24%  Similarity=0.326  Sum_probs=255.2

Q ss_pred             EEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEcc
Q 041562           76 VSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVS  154 (653)
Q Consensus        76 v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls  154 (653)
                      ...+.++.|.+. .+.+.+.++..|.+|++++|++. ..|++++. ..++.++.++|++. .+|+.+.. +.+|+.++++
T Consensus        47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s-~~~l~~l~~s  122 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGS-LISLVKLDCS  122 (565)
T ss_pred             hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhh-hhhhhhhhcc
Confidence            455667777665 44566777888888888888877 44444444 66777777777777 67766553 5555566666


Q ss_pred             CCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcc
Q 041562          155 NNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISG  234 (653)
Q Consensus       155 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~  234 (653)
                      +|.+...++.. +  .+-.|+.++..+|+++ ..|..+.++.+|..+++.+|.+.. .|+..-+++.|++||...|.+. 
T Consensus       123 ~n~~~el~~~i-~--~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-  196 (565)
T KOG0472|consen  123 SNELKELPDSI-G--RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-  196 (565)
T ss_pred             ccceeecCchH-H--HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-
Confidence            66555443321 1  3444555555555554 344455555555555555555542 2222222455555555554443 


Q ss_pred             cccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccc-cCCCCCcEEEccCCcCccccChhhc
Q 041562          235 SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL-KNCINLTLLNLQSNFFEGDISVFNF  313 (653)
Q Consensus       235 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~i~~~~~  313 (653)
                      .+|..++.+.+|..|++..|++. .+| .|..+..|++++++.|++. .+|... .+++++..||+.+|+++ ++|. .+
T Consensus       197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pd-e~  271 (565)
T KOG0472|consen  197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPD-EI  271 (565)
T ss_pred             cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCch-HH
Confidence            44445555555555555555544 233 4444455555555555544 333332 24455555555555554 3442 33


Q ss_pred             cCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCC------CCCCE----EECCCC---CCCC-
Q 041562          314 STLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVAL------KSLSF----LSLSNN---SLTN-  379 (653)
Q Consensus       314 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l------~~L~~----L~Ls~n---~l~~-  379 (653)
                      ..+.+|++||+++|.++ ..|..++++ .|+.|.+.+|.+... -..+-..      +.|+.    =.++..   .-+. 
T Consensus       272 clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~  348 (565)
T KOG0472|consen  272 CLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM  348 (565)
T ss_pred             HHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence            44444555555555554 344445544 455555555543211 0000000      00000    000000   0000 


Q ss_pred             --CCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCc
Q 041562          380 --ITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLT  457 (653)
Q Consensus       380 --~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  457 (653)
                        .+..+.......+.+.|+++.-+++. +|+..+-.  ..-.-.+..+++.|++. ++|..+..+..+.+.-+..|+..
T Consensus       349 t~~~~~~~~~~~~i~tkiL~~s~~qlt~-VPdEVfea--~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i  424 (565)
T KOG0472|consen  349 TLPSESFPDIYAIITTKILDVSDKQLTL-VPDEVFEA--AKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI  424 (565)
T ss_pred             CCCCCcccchhhhhhhhhhccccccccc-CCHHHHHH--hhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence              00011111223344444444444432 22221110  01112455666666666 56665555554443333333333


Q ss_pred             cCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceee
Q 041562          458 GSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKT  537 (653)
Q Consensus       458 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  537 (653)
                      +.+|..+..+++|..|+|++|.+. .+|..++.+..|+.++++.+..                                -
T Consensus       425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF--------------------------------r  471 (565)
T KOG0472|consen  425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF--------------------------------R  471 (565)
T ss_pred             ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc--------------------------------c
Confidence            366666777777777777777665 6677777776676666654311                                1


Q ss_pred             eCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCC
Q 041562          538 TASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG  615 (653)
Q Consensus       538 ~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  615 (653)
                      .+|..+-.+. .++.+-.++|++....|+.+++|.+|..|||.+|.+. .||..++++++|++|++++|+++  .|..
T Consensus       472 ~lP~~~y~lq-~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  472 MLPECLYELQ-TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             cchHHHhhHH-HHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence            2344444444 5666667778888777777999999999999999998 78888999999999999999997  5543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-37  Score=310.44  Aligned_cols=394  Identities=22%  Similarity=0.247  Sum_probs=222.5

Q ss_pred             CcCEEEccCCCCCCCCchHHH-hc-CCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCC
Q 041562          122 YIKIIDLSSNHFQGKIPSTIF-RL-TQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLK  199 (653)
Q Consensus       122 ~L~~L~Ls~n~l~~~ip~~~~-~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  199 (653)
                      .-+.||.+++.+. .+...-. +. .+.-+.||+++|.+....+..+.  ++++|+++++.+|.++ .+|.......+|+
T Consensus        53 ~~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~--nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~  128 (873)
T KOG4194|consen   53 NTRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFY--NLPNLQEVNLNKNELT-RIPRFGHESGHLE  128 (873)
T ss_pred             CceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHh--cCCcceeeeeccchhh-hccccccccccee
Confidence            3455777777665 2211100 00 12234466666655554333222  4555555555555555 4454444444555


Q ss_pred             EEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCc
Q 041562          200 TFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNS  279 (653)
Q Consensus       200 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  279 (653)
                      .|+|.+|.|+..-.+.+..++.|+.|||+.|.|+......|..-.++++|+|++|+++...-..|..+.+|..|.|++|+
T Consensus       129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr  208 (873)
T KOG4194|consen  129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR  208 (873)
T ss_pred             EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence            55555555554444445555555555555555553333444444455555555555554444445555555555555555


Q ss_pred             CcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCch
Q 041562          280 LSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISP  359 (653)
Q Consensus       280 l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  359 (653)
                      ++...+..|.++++|+.|+|..|++. .+....|.++++|+.|.+..|.+...-...|..+.++++|+|+.|+++..-..
T Consensus       209 ittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g  287 (873)
T KOG4194|consen  209 ITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG  287 (873)
T ss_pred             ccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence            55433344444555555555555554 33233455555555555555555544444455555555555555555544444


Q ss_pred             hhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhh
Q 041562          360 GIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSW  439 (653)
Q Consensus       360 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~  439 (653)
                      ++..++.|+.|++++|.|..+.                          ++..     .-+++|++|+|++|+++...+..
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih--------------------------~d~W-----sftqkL~~LdLs~N~i~~l~~~s  336 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIH--------------------------IDSW-----SFTQKLKELDLSSNRITRLDEGS  336 (873)
T ss_pred             cccccchhhhhccchhhhheee--------------------------cchh-----hhcccceeEeccccccccCChhH
Confidence            4555555555555555544332                          2211     23467777777777777666777


Q ss_pred             hcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCccc
Q 041562          440 IGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNF  519 (653)
Q Consensus       440 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~  519 (653)
                      |..+..|++|+|++|.+...-...|..+++|+.|||++|.++..+.++-...                            
T Consensus       337 f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f----------------------------  388 (873)
T KOG4194|consen  337 FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF----------------------------  388 (873)
T ss_pred             HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh----------------------------
Confidence            7777778888888887776555667777788888888887765544321111                            


Q ss_pred             ccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCC
Q 041562          520 IGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLS  599 (653)
Q Consensus       520 ~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~  599 (653)
                                              ..++ +|+.|+|.+|++..+.-..|..+.+||.|||.+|.|...-|..|..+ .|+
T Consensus       389 ------------------------~gl~-~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk  442 (873)
T KOG4194|consen  389 ------------------------NGLP-SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELK  442 (873)
T ss_pred             ------------------------ccch-hhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhh
Confidence                                    1122 67778888888875555678888888888888888877777777777 777


Q ss_pred             eeecCC
Q 041562          600 AFNVAE  605 (653)
Q Consensus       600 ~L~ls~  605 (653)
                      .|.+..
T Consensus       443 ~Lv~nS  448 (873)
T KOG4194|consen  443 ELVMNS  448 (873)
T ss_pred             hhhhcc
Confidence            776543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-37  Score=308.00  Aligned_cols=367  Identities=22%  Similarity=0.227  Sum_probs=187.7

Q ss_pred             CEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEc
Q 041562          101 SHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDL  179 (653)
Q Consensus       101 ~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L  179 (653)
                      +.||+|+|.+...-+..|.+ ++|+.+++.+|.++ .||... ....+|+.|+|.+|.++..-..++.  .++.||+|||
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~--~l~alrslDL  156 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELS--ALPALRSLDL  156 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHH--hHhhhhhhhh
Confidence            34555555554444444433 45555555555544 444421 1233355555555544443333222  2445555555


Q ss_pred             cCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcc
Q 041562          180 SNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGL  259 (653)
Q Consensus       180 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  259 (653)
                      |.|.++......|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+|+...+..|.++++|+.|+|..|++.-.
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            55555443334444444555555555555544444455555555555555555543344444455555555555554422


Q ss_pred             cCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcC
Q 041562          260 IPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS  339 (653)
Q Consensus       260 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  339 (653)
                      ---.|.++++|+.|.|..|++...-...|..+.++++|+|+.|+++ .+....+-+++.|+.|++++|.|....+..+..
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhh
Confidence            1223445555555555555555444444555555555555555554 333334445555555555555555444555555


Q ss_pred             CCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCC
Q 041562          340 CKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGF  419 (653)
Q Consensus       340 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  419 (653)
                      +++|+.|+|++|+++...+..|..+..|++|.|++|.++.+..  ..|..+++|+.|+++.|.+...+.+  ....|.++
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e--~af~~lssL~~LdLr~N~ls~~IED--aa~~f~gl  391 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE--GAFVGLSSLHKLDLRSNELSWCIED--AAVAFNGL  391 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh--hHHHHhhhhhhhcCcCCeEEEEEec--chhhhccc
Confidence            5555555555555555555555555555555555555554433  2344455555555555555555444  22334556


Q ss_pred             CCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccC
Q 041562          420 KNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSN  477 (653)
Q Consensus       420 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  477 (653)
                      ++|+.|++.+|++....-.+|..++.|+.|||.+|.|-..-|..|..+ .|++|.+..
T Consensus       392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             hhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            666666666666664444566666666666666666666666666665 566655543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.7e-39  Score=311.78  Aligned_cols=486  Identities=25%  Similarity=0.333  Sum_probs=383.2

Q ss_pred             cCCCCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCC
Q 041562           95 GNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSI  174 (653)
Q Consensus        95 ~~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L  174 (653)
                      ..-.-|+.|++++|.+....++.-....|.+|++.+|+++ +.|+++.. +..++.++.++|+++..++. ++  .+.+|
T Consensus        42 W~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~-l~~l~~l~vs~n~ls~lp~~-i~--s~~~l  116 (565)
T KOG0472|consen   42 WEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAIGE-LEALKSLNVSHNKLSELPEQ-IG--SLISL  116 (565)
T ss_pred             hhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHHHH-HHHHHHhhcccchHhhccHH-Hh--hhhhh
Confidence            3345688999999998855555444488999999999999 88888765 78899999999998876543 33  57899


Q ss_pred             CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccC
Q 041562          175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSN  254 (653)
Q Consensus       175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  254 (653)
                      +.+++++|.+. ..|..++.+..|..++..+|+++ ..|.++..+.+|..+++.+|++.. .|+..-+++.|++||.-.|
T Consensus       117 ~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N  193 (565)
T KOG0472|consen  117 VKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSN  193 (565)
T ss_pred             hhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchh
Confidence            99999999998 77889999999999999999998 788899999999999999999984 4544555999999999998


Q ss_pred             cCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCC
Q 041562          255 SLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLP  334 (653)
Q Consensus       255 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~  334 (653)
                      -++ .+|+.++.+.+|+.|+|.+|++. .+| .|..|..|++++++.|.+. .+|+.....++++.+||+..|+++ ..|
T Consensus       194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~P  268 (565)
T KOG0472|consen  194 LLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVP  268 (565)
T ss_pred             hhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCc
Confidence            887 67889999999999999999998 677 6999999999999999998 788877789999999999999998 789


Q ss_pred             ccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccC---CCCCcE----EECCCCCCCcc-
Q 041562          335 ITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMG---CKNLKV----LIIPLNFMDET-  406 (653)
Q Consensus       335 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~---l~~L~~----L~l~~n~~~~~-  406 (653)
                      ..+.-+.+|..||+++|.++ ..|..++++ .|+.|-+.+|.+..+...+-.-+.   ++.|+.    =.++.. -++. 
T Consensus       269 de~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s-e~~~e  345 (565)
T KOG0472|consen  269 DEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS-EGGTE  345 (565)
T ss_pred             hHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC-ccccc
Confidence            99999999999999999998 567789999 999999999998765433211100   111111    001111 0010 


Q ss_pred             -CCC--cccccCCCCCCCcCEEEccCCcCcccchhhhcCCcc---CCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcC
Q 041562          407 -MPD--NDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKK---LQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLI  480 (653)
Q Consensus       407 -~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  480 (653)
                       .++  ...+.......+.+.|++++-+++ .+|+....-..   ....+++.|++. ++|..+..+..+...-+..|+.
T Consensus       346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~  423 (565)
T KOG0472|consen  346 TAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNK  423 (565)
T ss_pred             ccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCc
Confidence             000  001111223456888999999998 56665544444   788999999998 7887777776665544444444


Q ss_pred             cccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccC
Q 041562          481 SGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNF  560 (653)
Q Consensus       481 ~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l  560 (653)
                      .+.+|..++.+++++.++++++                                +...+|.+.+.+. .|+.||+|+|+|
T Consensus       424 isfv~~~l~~l~kLt~L~L~NN--------------------------------~Ln~LP~e~~~lv-~Lq~LnlS~NrF  470 (565)
T KOG0472|consen  424 ISFVPLELSQLQKLTFLDLSNN--------------------------------LLNDLPEEMGSLV-RLQTLNLSFNRF  470 (565)
T ss_pred             cccchHHHHhhhcceeeecccc--------------------------------hhhhcchhhhhhh-hhheeccccccc
Confidence            4588888999999988887653                                4456788999999 899999999999


Q ss_pred             ccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCC
Q 041562          561 SGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDL  632 (653)
Q Consensus       561 ~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~l  632 (653)
                      . .+|..+..+..+|.+-.++|++...-|+.+.++..|.+||+.+|.+...-|..+.+.++....+.|||+-
T Consensus       471 r-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  471 R-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             c-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            8 8999999999999998899999866666699999999999999999954455588999999999999975

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.98  E-value=8.9e-35  Score=294.26  Aligned_cols=368  Identities=27%  Similarity=0.413  Sum_probs=297.0

Q ss_pred             CCCCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEE
Q 041562          171 FCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL  249 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  249 (653)
                      ++-.+-.|+++|.++| ..|..+..+++++.|.|....+. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            4456677778888774 67888888888888888888877 78888888899999999988887 555678888889999


Q ss_pred             EcccCcCCc-ccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCc
Q 041562          250 ELYSNSLTG-LIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL  328 (653)
Q Consensus       250 ~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~  328 (653)
                      .+..|++.. -+|..+..+..|..|||++|++. ..|..+..-+++-.|+|++|++. .||...|.++..|-.|||++|+
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence            998888763 36778888999999999999998 78888888899999999999997 7887778888889999999999


Q ss_pred             ccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCC
Q 041562          329 FTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMP  408 (653)
Q Consensus       329 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  408 (653)
                      +. .+|..+..+..|++|+|++|.+...-...+..+++|+.|.+++.+-+-                         ..+|
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl-------------------------~N~P  215 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL-------------------------DNIP  215 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-------------------------hcCC
Confidence            87 677788888889999999888764433344456667777777665331                         1112


Q ss_pred             CcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccc
Q 041562          409 DNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEF  488 (653)
Q Consensus       409 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  488 (653)
                      .     ++.++.+|..+|++.|.+. ..|+.+.++++|+.|+||+|+|+ .+.-..+...+|+.|++|+|+++ .+|.++
T Consensus       216 t-----sld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~av  287 (1255)
T KOG0444|consen  216 T-----SLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAV  287 (1255)
T ss_pred             C-----chhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHH
Confidence            1     1235677888888888888 78999999999999999999988 44455667778899999999998 889999


Q ss_pred             cCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCcccccccc
Q 041562          489 CRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQI  568 (653)
Q Consensus       489 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l  568 (653)
                      +.++.|+.+...++.                             .++ ..||+.||.+. .|+++..++|.+. ..|+.+
T Consensus       288 cKL~kL~kLy~n~Nk-----------------------------L~F-eGiPSGIGKL~-~Levf~aanN~LE-lVPEgl  335 (1255)
T KOG0444|consen  288 CKLTKLTKLYANNNK-----------------------------LTF-EGIPSGIGKLI-QLEVFHAANNKLE-LVPEGL  335 (1255)
T ss_pred             hhhHHHHHHHhccCc-----------------------------ccc-cCCccchhhhh-hhHHHHhhccccc-cCchhh
Confidence            988888776654321                             112 24799999999 9999999999998 899999


Q ss_pred             ccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCccc
Q 041562          569 SQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR  609 (653)
Q Consensus       569 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  609 (653)
                      ..+..|+.|.|++|++. .+|+.+.-++-|+.||+..|+-.
T Consensus       336 cRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  336 CRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            99999999999999998 89999999999999999999755

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.9e-34  Score=290.52  Aligned_cols=385  Identities=26%  Similarity=0.388  Sum_probs=279.9

Q ss_pred             CCCCCEEECCCCCCC-CCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCC
Q 041562           97 LTHLSHLNLSHNRLS-GEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSI  174 (653)
Q Consensus        97 l~~L~~L~Ls~n~~~-~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L  174 (653)
                      |+-.|-.|+++|.|+ +.+|..... +.++.|.|....+. .+|+++.. +.                          +|
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lq--------------------------kL   57 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQ--------------------------KL   57 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-Hh--------------------------hh
Confidence            444555566666665 334444443 55555555555555 66665442 44                          44


Q ss_pred             CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCC-CccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEccc
Q 041562          175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG-SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS  253 (653)
Q Consensus       175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  253 (653)
                      ++|.+++|++. .+...+..++.|+.+.+..|++.. .+|..+..+..|+.|||+.|++. ..|..+..-+++-+|+|++
T Consensus        58 EHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~  135 (1255)
T KOG0444|consen   58 EHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSY  135 (1255)
T ss_pred             hhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEccc
Confidence            44444444444 333455566666666666666543 57778888888888888888887 6788888888888888888


Q ss_pred             CcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc-cc
Q 041562          254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT-GS  332 (653)
Q Consensus       254 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~-~~  332 (653)
                      |++..+....|.+++.|-.|||++|++. .+|..+..+..|+.|+|++|.+. ......+..+++|++|.+++.+-+ ..
T Consensus       136 N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N  213 (1255)
T KOG0444|consen  136 NNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDN  213 (1255)
T ss_pred             CccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhc
Confidence            8887543344667888888888888887 66777888888888888888775 222224455667778888877544 35


Q ss_pred             CCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCccc
Q 041562          333 LPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDR  412 (653)
Q Consensus       333 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  412 (653)
                      +|.++..+.+|..++++.|.+. ..|+.+..+++|+.|+||+|+++.+....                            
T Consensus       214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~----------------------------  264 (1255)
T KOG0444|consen  214 IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTE----------------------------  264 (1255)
T ss_pred             CCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccH----------------------------
Confidence            7888888889999999999887 78888888999999999999887554322                            


Q ss_pred             ccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCcc-CCchhhcCCCCCCEEEccCCcCcccCCccccCC
Q 041562          413 LTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG-SVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRL  491 (653)
Q Consensus       413 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  491 (653)
                          ....+|+.|+++.|+++ .+|+++.++++|+.|.+.+|+++- -+|..|+++.+|+.+..++|.+. ..|+.+++|
T Consensus       265 ----~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC  338 (1255)
T KOG0444|consen  265 ----GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRC  338 (1255)
T ss_pred             ----HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhh
Confidence                13468999999999999 899999999999999999998874 48999999999999999999886 566665555


Q ss_pred             CCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccC
Q 041562          492 PALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQL  571 (653)
Q Consensus       492 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l  571 (653)
                      .                                                        .|+.|.|++|++- .+|+.+.-+
T Consensus       339 ~--------------------------------------------------------kL~kL~L~~NrLi-TLPeaIHlL  361 (1255)
T KOG0444|consen  339 V--------------------------------------------------------KLQKLKLDHNRLI-TLPEAIHLL  361 (1255)
T ss_pred             H--------------------------------------------------------HHHHhccccccee-echhhhhhc
Confidence            4                                                        6788999999988 789999999


Q ss_pred             CCCCeEeCCCCeeeeecCcccccCCCCCeeecCC
Q 041562          572 TNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAE  605 (653)
Q Consensus       572 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  605 (653)
                      +.|+.||+..|.-.-..|.-=..-+.|+.-|+.+
T Consensus       362 ~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDF  395 (1255)
T KOG0444|consen  362 PDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDF  395 (1255)
T ss_pred             CCcceeeccCCcCccCCCCcchhhhcceeeecce
Confidence            9999999999976644443222235666666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-33  Score=298.22  Aligned_cols=466  Identities=28%  Similarity=0.357  Sum_probs=295.5

Q ss_pred             EEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEcc
Q 041562           76 VSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVS  154 (653)
Q Consensus        76 v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls  154 (653)
                      +..||++++.+. ..|..+..+.+|+.|+++.|.+. ..|..... .+|+++.|.+|.+. ..|.++. .+++|++|+++
T Consensus        47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl~~LdlS  122 (1081)
T KOG0618|consen   47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNLQYLDLS  122 (1081)
T ss_pred             eEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHH-hhhcccccccc
Confidence            556666655443 55566666666666666666665 34433333 66666666666666 6665543 36666666666


Q ss_pred             CCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcc
Q 041562          155 NNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISG  234 (653)
Q Consensus       155 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~  234 (653)
                      +|.|...++.-.   .++.++.+..++|.-...    ++... ++.+++..|.+.+.++.++..++.  .|+|.+|.+. 
T Consensus       123 ~N~f~~~Pl~i~---~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-  191 (1081)
T KOG0618|consen  123 FNHFGPIPLVIE---VLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-  191 (1081)
T ss_pred             hhccCCCchhHH---hhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-
Confidence            666654433211   345555666666621111    11111 566666666666666666655555  5667766665 


Q ss_pred             cccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhcc
Q 041562          235 SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFS  314 (653)
Q Consensus       235 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~  314 (653)
                        -..+.++.+|+.+....|++....    -.-++|+.|+.++|.++...+.  ..-.+|+++++++|+++ .+| ..++
T Consensus       192 --~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp-~wi~  261 (1081)
T KOG0618|consen  192 --VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLP-EWIG  261 (1081)
T ss_pred             --hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cch-HHHH
Confidence              223555666666666666665321    1235666677777766632221  22346777777777776 455 3666


Q ss_pred             CCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCC-C
Q 041562          315 TLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKN-L  393 (653)
Q Consensus       315 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~-L  393 (653)
                      .+.+|+.++..+|.++ .+|..+....+|+.|.+..|.+. .+|+....++.|++|+|..|++..++..+  +..... |
T Consensus       262 ~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~--l~v~~~~l  337 (1081)
T KOG0618|consen  262 ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNF--LAVLNASL  337 (1081)
T ss_pred             hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHH--HhhhhHHH
Confidence            7777777777777775 56666666677777777777776 45555666777777777777776666522  222222 4


Q ss_pred             cEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEE
Q 041562          394 KVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHI  473 (653)
Q Consensus       394 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  473 (653)
                      ..+..+.|.+.... ...    -..++.|+.|++.+|.+++.....+.+.++|++|+|++|++.......+.++..|++|
T Consensus       338 ~~ln~s~n~l~~lp-~~~----e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL  412 (1081)
T KOG0618|consen  338 NTLNVSSNKLSTLP-SYE----ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEEL  412 (1081)
T ss_pred             HHHhhhhccccccc-ccc----chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHH
Confidence            44555555443221 111    1245779999999999998888889999999999999999986555678899999999


Q ss_pred             EccCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCee
Q 041562          474 DFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHML  553 (653)
Q Consensus       474 ~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L  553 (653)
                      +||+|+++ .+|..+..+..|+++...++..                                -..| ++..++ .|+.+
T Consensus       413 ~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l--------------------------------~~fP-e~~~l~-qL~~l  457 (1081)
T KOG0618|consen  413 NLSGNKLT-TLPDTVANLGRLHTLRAHSNQL--------------------------------LSFP-ELAQLP-QLKVL  457 (1081)
T ss_pred             hcccchhh-hhhHHHHhhhhhHHHhhcCCce--------------------------------eech-hhhhcC-cceEE
Confidence            99999998 7888888888888777654322                                1234 666677 89999


Q ss_pred             ecCCccCccc-cccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCC
Q 041562          554 DLSHNNFSGN-IPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG  615 (653)
Q Consensus       554 ~Ls~N~l~~~-~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  615 (653)
                      |+|.|+++.. +|..... ++|++|||++|.-...--..|..+.++..+++.-|    .+|++
T Consensus       458 DlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~----~~~d~  515 (1081)
T KOG0618|consen  458 DLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN----NTPDG  515 (1081)
T ss_pred             ecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC----CCCcc
Confidence            9999998754 3433333 78999999999843333355666677777777666    45554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=8.2e-34  Score=300.44  Aligned_cols=460  Identities=29%  Similarity=0.357  Sum_probs=279.0

Q ss_pred             EEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEcc
Q 041562           76 VSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVS  154 (653)
Q Consensus        76 v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls  154 (653)
                      ++.|++..|-+-..--+.+.+.-+|+.||+++|.+. .+|..+.. ..|+.|+++.|.+. .+|.... ++.+|++++|.
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~-~~~~l~~lnL~   99 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCS-NMRNLQYLNLK   99 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhh-hhhcchhheec
Confidence            455555544433221233333344666666666654 44544444 66666666666665 5554433 35666666666


Q ss_pred             CCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcc
Q 041562          155 NNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISG  234 (653)
Q Consensus       155 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~  234 (653)
                      +|.+...+ ..+.  .+.+|++|++++|.+. .+|..+..++.+..+..++|.....    ++... ++.+++..|.+.+
T Consensus       100 ~n~l~~lP-~~~~--~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~  170 (1081)
T KOG0618|consen  100 NNRLQSLP-ASIS--ELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGG  170 (1081)
T ss_pred             cchhhcCc-hhHH--hhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhccc
Confidence            66554332 2221  3556666666666665 5555666666666666666522111    12222 6666666666666


Q ss_pred             cccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhcc
Q 041562          235 SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFS  314 (653)
Q Consensus       235 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~  314 (653)
                      .++..+..++.  .|+|.+|.+. .  ..+..+.+|+.|....|++...    --.-++|+.|+.++|.++ .+.  .-.
T Consensus       171 ~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~-~~~--~~p  238 (1081)
T KOG0618|consen  171 SFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLT-TLD--VHP  238 (1081)
T ss_pred             chhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcce-eec--ccc
Confidence            66666666655  6777777766 2  2456667777777777776632    123367778888888776 222  123


Q ss_pred             CCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCc
Q 041562          315 TLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLK  394 (653)
Q Consensus       315 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~  394 (653)
                      ...+|++++++.|+++ .+|.|+..+.+|+.++..+|+++ .+|..+...++|+.|.+.+|.+..++.   ...+.+.|+
T Consensus       239 ~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~---~le~~~sL~  313 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPP---FLEGLKSLR  313 (1081)
T ss_pred             ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCC---cccccceee
Confidence            3457888888888887 56688888888888888888885 677777788888888888888877664   345677888


Q ss_pred             EEECCCCCCCccCCCcccccCCCCC-CCcCEEEccCCcCcccchhh-hcCCccCCeeeCcCCcCccCCchhhcCCCCCCE
Q 041562          395 VLIIPLNFMDETMPDNDRLTSANGF-KNLQVLGLAECKLKGQVPSW-IGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFH  472 (653)
Q Consensus       395 ~L~l~~n~~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  472 (653)
                      .|++..|.+..- |+.+.    .-. ..+..|+.+.|++. ..|.. =...+.|+.|.+.+|.++...-..+.++++|+.
T Consensus       314 tLdL~~N~L~~l-p~~~l----~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV  387 (1081)
T KOG0618|consen  314 TLDLQSNNLPSL-PDNFL----AVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV  387 (1081)
T ss_pred             eeeehhcccccc-chHHH----hhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence            888888877533 33111    111 23566666666666 33321 123567888999999998877777888899999


Q ss_pred             EEccCCcCcccCC-ccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccC
Q 041562          473 IDFSNNLISGEFP-KEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLH  551 (653)
Q Consensus       473 L~Ls~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~  551 (653)
                      |+|++|++. .+| ..+.+++.|+.++++++                                ....+|..+..++ .|+
T Consensus       388 LhLsyNrL~-~fpas~~~kle~LeeL~LSGN--------------------------------kL~~Lp~tva~~~-~L~  433 (1081)
T KOG0618|consen  388 LHLSYNRLN-SFPASKLRKLEELEELNLSGN--------------------------------KLTTLPDTVANLG-RLH  433 (1081)
T ss_pred             eeecccccc-cCCHHHHhchHHhHHHhcccc--------------------------------hhhhhhHHHHhhh-hhH
Confidence            999999887 444 44555665555555442                                1123455555555 666


Q ss_pred             eeecCCccCccccccccccCCCCCeEeCCCCeeee-ecCcccccCCCCCeeecCCCc
Q 041562          552 MLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSG-EIPVSLKRLHFLSAFNVAENN  607 (653)
Q Consensus       552 ~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~-~ip~~l~~l~~L~~L~ls~N~  607 (653)
                      +|...+|.+. ..| .+.+++.|+.+|+|.|+++. .+|.... -+.|++||+++|.
T Consensus       434 tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  434 TLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             HHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence            6666666666 455 55666666666666666653 2232222 1566666666664

>PLN03210 Resistant to P

Probab=99.92  E-value=9.1e-24  Score=249.81  Aligned_cols=341  Identities=19%  Similarity=0.203  Sum_probs=187.8

Q ss_pred             CCCCCCCCEEEcccCC------CCCCccccccCCC-CCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccc
Q 041562          192 LGSCSRLKTFRAGFNY------LTGSLPDDIYTAT-SLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDI  264 (653)
Q Consensus       192 ~~~l~~L~~L~L~~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l  264 (653)
                      |..+++|+.|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|++. .++..+
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~  630 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV  630 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence            4445555555543332      1122344443332 3555555555444 344443 3445555555555544 234444


Q ss_pred             cCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCC
Q 041562          265 GKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLT  344 (653)
Q Consensus       265 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  344 (653)
                      ..+++|+.|+|+++...+.+|. +..+++|+.|++++|.....+|. .+..+++|+.|++++|...+.+|..+ ++++|+
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~  707 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY  707 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence            5555555555555433334442 44555555555555544334442 44555555555555543333444433 455555


Q ss_pred             eEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCC---ccCCCcccccCCCCCCC
Q 041562          345 AVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMD---ETMPDNDRLTSANGFKN  421 (653)
Q Consensus       345 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~~~~~~~~~~~~  421 (653)
                      .|++++|...+.+|..   ..+|++|++++|.+..+|..+    .+++|+.|.+..+...   +.+..... ......++
T Consensus       708 ~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~----~l~~L~~L~l~~~~~~~l~~~~~~l~~-~~~~~~~s  779 (1153)
T PLN03210        708 RLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL----RLENLDELILCEMKSEKLWERVQPLTP-LMTMLSPS  779 (1153)
T ss_pred             EEeCCCCCCccccccc---cCCcCeeecCCCccccccccc----cccccccccccccchhhccccccccch-hhhhcccc
Confidence            5555555433333321   235555666665555444322    3444555544432211   00000000 00113467


Q ss_pred             cCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccc
Q 041562          422 LQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKN  501 (653)
Q Consensus       422 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~  501 (653)
                      |+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|...             
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~-------------  845 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS-------------  845 (1153)
T ss_pred             chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc-------------
Confidence            8888888887777788888888888888888876555677655 67888888888875433332210             


Q ss_pred             cccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCC
Q 041562          502 KANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSK  581 (653)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~  581 (653)
                                                                   . +|+.|+|++|.++ .+|.++..+++|+.|+|++
T Consensus       846 ---------------------------------------------~-nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        846 ---------------------------------------------T-NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             ---------------------------------------------c-ccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence                                                         0 5778888888887 6788888888888888888


Q ss_pred             CeeeeecCcccccCCCCCeeecCCCc
Q 041562          582 NHLSGEIPVSLKRLHFLSAFNVAENN  607 (653)
Q Consensus       582 N~l~~~ip~~l~~l~~L~~L~ls~N~  607 (653)
                      |+-...+|..+..++.|+.+++++|.
T Consensus       879 C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        879 CNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCcCccCcccccccCCCeeecCCCc
Confidence            54444677777788888888888875

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.92  E-value=3.6e-23  Score=244.75  Aligned_cols=363  Identities=22%  Similarity=0.263  Sum_probs=205.7

Q ss_pred             CCCEEEEEcCCCCcce--eccccccCCCCCCEEECCCCCC------CCCCCccccC--CCcCEEEccCCCCCCCCchHHH
Q 041562           73 NGRVSHLWLPWKGLTG--TISLSIGNLTHLSHLNLSHNRL------SGEFPSSLSS--NYIKIIDLSSNHFQGKIPSTIF  142 (653)
Q Consensus        73 ~~~v~~L~L~~~~l~g--~~~~~l~~l~~L~~L~Ls~n~~------~~~~p~~~~~--~~L~~L~Ls~n~l~~~ip~~~~  142 (653)
                      +.+|.++.+....+..  .-+.+|..+++|+.|.+..+..      ...+|..+..  .+|+.|++.++.+. .+|..+ 
T Consensus       531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-  608 (1153)
T PLN03210        531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-  608 (1153)
T ss_pred             cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence            4567777665544432  1235688999999999976643      2334554443  56777777777766 666654 


Q ss_pred             hcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCC
Q 041562          143 RLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSL  222 (653)
Q Consensus       143 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  222 (653)
                       ...+|++|++.+|.+..... .  ...+++|++|+++++.....+| .+..+++|++|++++|.....+|..+..+++|
T Consensus       609 -~~~~L~~L~L~~s~l~~L~~-~--~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L  683 (1153)
T PLN03210        609 -RPENLVKLQMQGSKLEKLWD-G--VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKL  683 (1153)
T ss_pred             -CccCCcEEECcCcccccccc-c--cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCC
Confidence             25667777777766654322 1  1246666666666655444444 35566666666666665555666666666666


Q ss_pred             CEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCC
Q 041562          223 EQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN  302 (653)
Q Consensus       223 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  302 (653)
                      +.|++++|.....+|..+ ++++|++|++++|...+.+|..   ..+|++|++++|.+. .+|..+ .+++|++|++.++
T Consensus       684 ~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~  757 (1153)
T PLN03210        684 EDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEM  757 (1153)
T ss_pred             CEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-ccccccccccccc
Confidence            666666654434455444 5666666666666544444432   245566666666654 444433 3555555555543


Q ss_pred             cCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCC-CCCCCC
Q 041562          303 FFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNN-SLTNIT  381 (653)
Q Consensus       303 ~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~  381 (653)
                      ... .+..                 .+....+......++|+.|++++|...+.+|..++.+++|+.|++++| .+..+|
T Consensus       758 ~~~-~l~~-----------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP  819 (1153)
T PLN03210        758 KSE-KLWE-----------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP  819 (1153)
T ss_pred             chh-hccc-----------------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence            211 0000                 000001111122345555555555544455555555555555555554 233333


Q ss_pred             cchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCc
Q 041562          382 GAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVP  461 (653)
Q Consensus       382 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~  461 (653)
                      ..    ..+++|+.|++++|.....+|.        ...+|++|+|++|.++ .+|.++..+++|++|++++|+-...+|
T Consensus       820 ~~----~~L~sL~~L~Ls~c~~L~~~p~--------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~  886 (1153)
T PLN03210        820 TG----INLESLESLDLSGCSRLRTFPD--------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVS  886 (1153)
T ss_pred             CC----CCccccCEEECCCCCccccccc--------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccC
Confidence            22    1455566666655544333332        1256778888888777 577777788888888888765444566


Q ss_pred             hhhcCCCCCCEEEccCCc
Q 041562          462 RFLGNMSSLFHIDFSNNL  479 (653)
Q Consensus       462 ~~~~~l~~L~~L~Ls~N~  479 (653)
                      ..+..+++|+.+++++|.
T Consensus       887 ~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        887 LNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccccccCCCeeecCCCc
Confidence            667777788888877774

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=8.6e-26  Score=218.52  Aligned_cols=277  Identities=20%  Similarity=0.195  Sum_probs=210.3

Q ss_pred             CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEE-EccCCCCCCCCchHHHhcCCCCcEE
Q 041562           74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKII-DLSSNHFQGKIPSTIFRLTQNLITF  151 (653)
Q Consensus        74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L-~Ls~n~l~~~ip~~~~~~l~~L~~L  151 (653)
                      ...+.|+|..|+|+-.-+.+|..+++||.||||+|+|+.+-|..|.. .+|..| +.++|+|+ .+|...|..+..|+.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            36889999999999777789999999999999999999999999987 555554 55559999 9999999999999999


Q ss_pred             EccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCC------------CccccccCC
Q 041562          152 NVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG------------SLPDDIYTA  219 (653)
Q Consensus       152 ~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~p~~l~~l  219 (653)
                      .+.-|++.-.....+.  .+++|..|.+..|.+.......|..+..++.+.+..|.+..            ..|..++..
T Consensus       146 llNan~i~Cir~~al~--dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  146 LLNANHINCIRQDALR--DLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             hcChhhhcchhHHHHH--HhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence            9999998876655544  68999999999999986555589999999999998887431            122233333


Q ss_pred             CCCCEEeccCCcCcccccccccC-CCCCcEEEcccCcCCcccCc-cccCCCCCCeEEeecCcCcccCCccccCCCCCcEE
Q 041562          220 TSLEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIPR-DIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLL  297 (653)
Q Consensus       220 ~~L~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  297 (653)
                      .-..-..+.+.++....+..+.. +..+..--.+.+...+..|. .|..+++|+.|+|++|+++++-+.+|.+...+++|
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence            33333334444444332322221 12222222233334444443 47889999999999999998888889999999999


Q ss_pred             EccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccc
Q 041562          298 NLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE  354 (653)
Q Consensus       298 ~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  354 (653)
                      .|..|++. .+....|.++..|+.|+|.+|+|+...|..|..+..|.+|++-.|.+.
T Consensus       304 ~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  304 YLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            99999887 666668888999999999999999888888888899999998887654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=7.5e-22  Score=216.98  Aligned_cols=42  Identities=24%  Similarity=0.389  Sum_probs=24.1

Q ss_pred             cCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCccc
Q 041562          550 LHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSL  592 (653)
Q Consensus       550 L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l  592 (653)
                      |+.|++++|+++ .+|..+.++++|+.|+|++|++++.+|..+
T Consensus       424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            445556666655 455555566666666666666665555444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=3.9e-24  Score=207.12  Aligned_cols=396  Identities=20%  Similarity=0.185  Sum_probs=189.1

Q ss_pred             CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccC-CcCcccccccccCCCCCcEEEc
Q 041562          173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSF-NHISGSIKNGIVNLTSLRILEL  251 (653)
Q Consensus       173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L  251 (653)
                      .-..++|..|.|+...+..|+.+++|+.|||++|.|+..-|.+|..++.|.+|-+.+ |+|+......|+++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            445666666666655556666666666666666666666666666666655555444 5666444455666666666666


Q ss_pred             ccCcCCcccCccccCCCCCCeEEeecCcCcccCCc-cccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562          252 YSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPS-SLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       252 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      .-|++.-...+.|..+++|..|.+.+|.+. .++. .+..+..++.+.+..|.+..      ..+++.+....       
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic------dCnL~wla~~~-------  213 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC------DCNLPWLADDL-------  213 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc------ccccchhhhHH-------
Confidence            666665555555666666666666666655 3333 55556666666665554321      11111111100       


Q ss_pred             ccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEE--ECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCC
Q 041562          331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFL--SLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMP  408 (653)
Q Consensus       331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L--~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  408 (653)
                      ...|..++......-..+.+.++..+-+..|...  ++.+  .++.............|..+++|+.+++++|.+++.-+
T Consensus       214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~  291 (498)
T KOG4237|consen  214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED  291 (498)
T ss_pred             hhchhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence            0112222222222222223332221111111100  1111  00000000001111234444444444444444443332


Q ss_pred             CcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCC---
Q 041562          409 DNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFP---  485 (653)
Q Consensus       409 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p---  485 (653)
                      .     +|.+...+++|.|..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|..|+|-.|.+.-.--   
T Consensus       292 ~-----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w  366 (498)
T KOG4237|consen  292 G-----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW  366 (498)
T ss_pred             h-----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH
Confidence            2     12345556666666666654444455666666666666666665556666666666666665555421100   


Q ss_pred             --ccc--------cCCC---CCCcccccccccccccccccccCCcccccccccccccccc-----------cc----eee
Q 041562          486 --KEF--------CRLP---ALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQ-----------YT----WKT  537 (653)
Q Consensus       486 --~~~--------~~l~---~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~----l~g  537 (653)
                        +.+        ..+.   .++.+.+++..      +..+............-...+..           ..    +--
T Consensus       367 l~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~------~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~  440 (498)
T KOG4237|consen  367 LGEWLRKKSVVGNPRCQSPGFVRQIPISDVA------FGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPR  440 (498)
T ss_pred             HHHHHhhCCCCCCCCCCCCchhccccchhcc------ccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCC
Confidence              000        0000   00011111000      00000000000000000000000           00    112


Q ss_pred             eCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCC
Q 041562          538 TASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAEN  606 (653)
Q Consensus       538 ~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  606 (653)
                      .||.       .-.+|++.+|.++ .+|..  .+.+| .+|+|+|+++..--..|.+++.|.+|-||||
T Consensus       441 ~iP~-------d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  441 GIPV-------DVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             CCCc-------hhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            2333       3457889999999 67776  67788 9999999998655577889999999999987

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=5.5e-21  Score=210.23  Aligned_cols=264  Identities=22%  Similarity=0.242  Sum_probs=130.1

Q ss_pred             CcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEE
Q 041562          122 YIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTF  201 (653)
Q Consensus       122 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  201 (653)
                      +-..|+++.+.++ .+|..+.   ++|+.|++++|+++..+.      ..++|++|++++|+++. +|..   .++|+.|
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~------lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L  267 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTS-LPVL---PPGLLEL  267 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC------CCCCCcEEEecCCccCc-ccCc---cccccee
Confidence            3556667776666 5666543   356666666666664321      23455555555555552 2321   2344555


Q ss_pred             EcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCc
Q 041562          202 RAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLS  281 (653)
Q Consensus       202 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  281 (653)
                      ++++|.++ .+|..   .++|+.|++++|+++ .+|.                           ..++|+.|++++|+++
T Consensus       268 ~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---------------------------~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        268 SIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---------------------------LPPGLQELSVSDNQLA  315 (788)
T ss_pred             eccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---------------------------cccccceeECCCCccc
Confidence            55555444 23321   133444444444444 2222                           1234555555555444


Q ss_pred             ccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhh
Q 041562          282 GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI  361 (653)
Q Consensus       282 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  361 (653)
                      + +|..   ..+|+.|++++|.++ .+|.    ...+|+.|++++|++++ +|..   ..+|+.|++++|.++. +|.. 
T Consensus       316 ~-Lp~l---p~~L~~L~Ls~N~L~-~LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l-  380 (788)
T PRK15387        316 S-LPAL---PSELCKLWAYNNQLT-SLPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL-  380 (788)
T ss_pred             c-CCCC---cccccccccccCccc-cccc----cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc-
Confidence            2 2221   123444555555554 2331    11345555555555552 3321   1345555555555552 3322 


Q ss_pred             cCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhc
Q 041562          362 VALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIG  441 (653)
Q Consensus       362 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~  441 (653)
                        ..+|+.|++++|+++.++..      .++|+.|++++|.+.. +|.        ...+|+.|++++|+++ .+|..+.
T Consensus       381 --~~~L~~LdLs~N~Lt~LP~l------~s~L~~LdLS~N~Lss-IP~--------l~~~L~~L~Ls~NqLt-~LP~sl~  442 (788)
T PRK15387        381 --PSGLKELIVSGNRLTSLPVL------PSELKELMVSGNRLTS-LPM--------LPSGLLSLSVYRNQLT-RLPESLI  442 (788)
T ss_pred             --ccccceEEecCCcccCCCCc------ccCCCEEEccCCcCCC-CCc--------chhhhhhhhhccCccc-ccChHHh
Confidence              23456666666666544421      1344455555554442 232        1134566667777766 5666666


Q ss_pred             CCccCCeeeCcCCcCccCCchhh
Q 041562          442 KLKKLQVLDLSFNQLTGSVPRFL  464 (653)
Q Consensus       442 ~l~~L~~L~Ls~n~l~~~~~~~~  464 (653)
                      ++++|+.|+|++|++++..+..+
T Consensus       443 ~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        443 HLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hccCCCeEECCCCCCCchHHHHH
Confidence            67777777777777766655544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=2e-20  Score=207.19  Aligned_cols=313  Identities=21%  Similarity=0.328  Sum_probs=150.4

Q ss_pred             cCCHHhHHHHHHhhhcCCCCC------CCCCCCCCCccccc----------------eEeCCCCCEEEEEcCCCCcceec
Q 041562           33 ACNQIDQDSLLSLGFNISSPG------LNWSSSTDCCLWEG----------------IKCDANGRVSHLWLPWKGLTGTI   90 (653)
Q Consensus        33 ~~~~~~~~~ll~~k~~~~~~~------~~W~~~~~~c~w~g----------------v~c~~~~~v~~L~L~~~~l~g~~   90 (653)
                      ...++|...+++..+.+..|+      +.|+..+++|.-..                |.|. .+.|+++..-+.......
T Consensus        59 ~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~-~~~vt~l~~~g~~~~~~~  137 (754)
T PRK15370         59 TASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG-GKSVTYTRVTESEQASSA  137 (754)
T ss_pred             CCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecC-CCcccccccccccccccC
Confidence            345678889999999998887      45988889996554                5564 345666665442211110


Q ss_pred             cccccCCCCCCEEEC----CCCCCCCCCC---ccc------cCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCc
Q 041562           91 SLSIGNLTHLSHLNL----SHNRLSGEFP---SSL------SSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNS  157 (653)
Q Consensus        91 ~~~l~~l~~L~~L~L----s~n~~~~~~p---~~~------~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~  157 (653)
                      ...-   ..-.+-..    ..+.-.+..+   ...      ...+...|+++++.++ .+|..+   .++|+.|++++|.
T Consensus       138 ~~~~---~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~  210 (754)
T PRK15370        138 SGSK---DAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACI---PEQITTLILDNNE  210 (754)
T ss_pred             CCCC---ChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCC
Confidence            0000   00000000    0000000000   000      0033445555555555 444432   2345555555555


Q ss_pred             CcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCccccc
Q 041562          158 FTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIK  237 (653)
Q Consensus       158 l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~  237 (653)
                      ++..+ ..+    .++|++|++++|.++ .+|..+.  .+|+.|++++|.+. .+|..+.  ++|+.|++++|++. .+|
T Consensus       211 LtsLP-~~l----~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP  278 (754)
T PRK15370        211 LKSLP-ENL----QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLP  278 (754)
T ss_pred             CCcCC-hhh----ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccc
Confidence            55332 111    234555555555554 2333322  24555555555555 4444432  35556666655555 344


Q ss_pred             ccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCC
Q 041562          238 NGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLL  317 (653)
Q Consensus       238 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~  317 (653)
                      ..+.  ++|++|++++|++++ +|..+.  ++|+.|++++|.++ .+|..+.  ++|+.|++++|.++ .+|. .+  .+
T Consensus       279 ~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~-~l--~~  346 (754)
T PRK15370        279 ENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALT-SLPA-SL--PP  346 (754)
T ss_pred             cccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCccc-cCCh-hh--cC
Confidence            4332  356666666665553 333222  34556666666655 2343322  45666666666555 2442 12  24


Q ss_pred             CcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcc
Q 041562          318 KLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGA  383 (653)
Q Consensus       318 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  383 (653)
                      +|+.|++++|+++ .+|..+.  ++|+.|++++|.++ .+|..+.  ..|+.|++++|+++.++..
T Consensus       347 sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~s  406 (754)
T PRK15370        347 ELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPES  406 (754)
T ss_pred             cccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchh
Confidence            5666666666655 3444332  45666666666665 3343332  2455666666666555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.9e-19  Score=199.53  Aligned_cols=202  Identities=26%  Similarity=0.385  Sum_probs=106.5

Q ss_pred             CCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEcc
Q 041562          221 SLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQ  300 (653)
Q Consensus       221 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  300 (653)
                      +.+.|+++++.++ .+|..+.  +.|+.|++++|+++. +|..+.  ++|++|++++|+++ .+|..+.  .+|+.|+++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            4566777766666 3454442  356667777766663 344332  36666666666665 3454432  356666666


Q ss_pred             CCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCC
Q 041562          301 SNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNI  380 (653)
Q Consensus       301 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  380 (653)
                      +|.+. .+|. .+  ..+|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++.+
T Consensus       250 ~N~L~-~LP~-~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        250 INRIT-ELPE-RL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL  319 (754)
T ss_pred             CCccC-cCCh-hH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC
Confidence            66655 4443 12  134555566555555 3444332  345555555555542 222221  2344444444444332


Q ss_pred             CcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCC
Q 041562          381 TGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSV  460 (653)
Q Consensus       381 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  460 (653)
                      +..                                  -.++|+.|++++|.+++ +|..+.  ++|+.|++++|++. .+
T Consensus       320 P~~----------------------------------l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~L  361 (754)
T PRK15370        320 PET----------------------------------LPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VL  361 (754)
T ss_pred             Ccc----------------------------------ccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cC
Confidence            211                                  11456666666666663 454442  56777777777766 45


Q ss_pred             chhhcCCCCCCEEEccCCcCc
Q 041562          461 PRFLGNMSSLFHIDFSNNLIS  481 (653)
Q Consensus       461 ~~~~~~l~~L~~L~Ls~N~l~  481 (653)
                      |..+.  ++|+.|++++|+++
T Consensus       362 P~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        362 PETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             Chhhc--CCcCEEECCCCcCC
Confidence            54442  46777777777665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=3.5e-19  Score=183.41  Aligned_cols=284  Identities=23%  Similarity=0.201  Sum_probs=131.3

Q ss_pred             EEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCC----ccccccCCCCCCEEeccCCcCcc------cccccccCCC
Q 041562          176 HLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGS----LPDDIYTATSLEQLSLSFNHISG------SIKNGIVNLT  244 (653)
Q Consensus       176 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~i~~------~~~~~l~~l~  244 (653)
                      .|+|..+.+++ .....+..+.+|+.++++++.+++.    ++..+...+.+++++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            45666666652 3344455566677777777766432    34445555667777776666541      2233445556


Q ss_pred             CCcEEEcccCcCCcccCccccCCCC---CCeEEeecCcCcc----cCCccccCC-CCCcEEEccCCcCccccCh---hhc
Q 041562          245 SLRILELYSNSLTGLIPRDIGKLTN---LESLVLHNNSLSG----SLPSSLKNC-INLTLLNLQSNFFEGDISV---FNF  313 (653)
Q Consensus       245 ~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~i~~---~~~  313 (653)
                      +|++|++++|.+.+..+..+..+.+   |++|++++|++.+    .+...+..+ ++|+.|++++|.+++....   ..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            6666666666665444434433333   6666666655542    112223333 4555555555554421110   122


Q ss_pred             cCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCc--chhhccCCC
Q 041562          314 STLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITG--AIRILMGCK  391 (653)
Q Consensus       314 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~~~~l~~l~  391 (653)
                      ..+++|++|++++|.+++...                    ..++..+...++|++|++++|.++....  ....+..++
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~--------------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~  221 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGI--------------------RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK  221 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHH--------------------HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence            333444444444444432100                    0111222233444444444444432110  001222333


Q ss_pred             CCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcc----cchhhhcCCccCCeeeCcCCcCccC----Cchh
Q 041562          392 NLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG----QVPSWIGKLKKLQVLDLSFNQLTGS----VPRF  463 (653)
Q Consensus       392 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~~~~  463 (653)
                      +|++|++++|.+.+..............+.|++|++++|.++.    .+...+..+++|+++++++|.+...    ....
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~  301 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES  301 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence            4444444444333210000000000123566666676666652    2334455556677777777776643    2233


Q ss_pred             hcCC-CCCCEEEccCCc
Q 041562          464 LGNM-SSLFHIDFSNNL  479 (653)
Q Consensus       464 ~~~l-~~L~~L~Ls~N~  479 (653)
                      +... +.|+++++.+|.
T Consensus       302 ~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         302 LLEPGNELESLWVKDDS  318 (319)
T ss_pred             HhhcCCchhhcccCCCC
Confidence            3333 566666666664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=5.7e-19  Score=181.87  Aligned_cols=138  Identities=26%  Similarity=0.324  Sum_probs=56.7

Q ss_pred             CCCCCCCEEEcccCCCCCCccccccCCCC---CCEEeccCCcCcc----cccccccCC-CCCcEEEcccCcCCcc----c
Q 041562          193 GSCSRLKTFRAGFNYLTGSLPDDIYTATS---LEQLSLSFNHISG----SIKNGIVNL-TSLRILELYSNSLTGL----I  260 (653)
Q Consensus       193 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~Ls~n~i~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----~  260 (653)
                      ..+++|+.|++++|.+.+..+..+..+..   |++|++++|.+.+    .+...+..+ ++|++|++++|.+++.    +
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            33444444444444444333333322222   5555555554442    112223333 4555555555554421    1


Q ss_pred             CccccCCCCCCeEEeecCcCccc----CCccccCCCCCcEEEccCCcCccccCh---hhccCCCCcCEEEccCCccc
Q 041562          261 PRDIGKLTNLESLVLHNNSLSGS----LPSSLKNCINLTLLNLQSNFFEGDISV---FNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       261 p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~i~~---~~~~~l~~L~~L~L~~n~l~  330 (653)
                      +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++....   ..+..+++|++|++++|.++
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            22233344455555555544421    122233334555555555544321100   12333444555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=2.5e-18  Score=148.41  Aligned_cols=155  Identities=32%  Similarity=0.455  Sum_probs=80.7

Q ss_pred             CCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeE
Q 041562          194 SCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESL  273 (653)
Q Consensus       194 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  273 (653)
                      ++.+++.|.+++|.++ .+|..+..+.+|+.|++.+|+|. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3445555555555555 44555555555555555555555 45555555555555555555554 445555555555555


Q ss_pred             EeecCcCcc-cCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcc
Q 041562          274 VLHNNSLSG-SLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQ  352 (653)
Q Consensus       274 ~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  352 (653)
                      ||.+|++.. .+|..|..++.|+.|++++|.+. .+|. ..+.+++|+.|.+..|.+- ..|..++.++.|++|++.+|+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~-dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPP-DVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCCh-hhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            555555432 34444445555555555555554 3332 4445555555555555444 344444444455555555554


Q ss_pred             cc
Q 041562          353 LE  354 (653)
Q Consensus       353 l~  354 (653)
                      ++
T Consensus       185 l~  186 (264)
T KOG0617|consen  185 LT  186 (264)
T ss_pred             ee
Confidence            44

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=4.8e-18  Score=146.61  Aligned_cols=164  Identities=27%  Similarity=0.402  Sum_probs=102.2

Q ss_pred             ccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCc
Q 041562          216 IYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLT  295 (653)
Q Consensus       216 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  295 (653)
                      +.++.+.+.|.|++|+++ .+|..++.+.+|+.|++++|+++ .+|..++.+++|+.|++.-|++. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            344555666666666666 45556666666666666666665 44566666666666666666665 5666666666666


Q ss_pred             EEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCC
Q 041562          296 LLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNN  375 (653)
Q Consensus       296 ~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  375 (653)
                      .||+.+|.+....-...|-.+..|+.|+++.|.+. .+|..++++++|+.|.+.+|.+- .+|.+++.+..|++|.+.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            66666666654332235555666666666666665 56666666666666666666665 45666666666666666666


Q ss_pred             CCCCCCcch
Q 041562          376 SLTNITGAI  384 (653)
Q Consensus       376 ~l~~~~~~~  384 (653)
                      +++.+|..+
T Consensus       184 rl~vlppel  192 (264)
T KOG0617|consen  184 RLTVLPPEL  192 (264)
T ss_pred             eeeecChhh
Confidence            666655443

>PLN03150 hypothetical protein; Provisional

Probab=99.61  E-value=4.6e-15  Score=164.25  Aligned_cols=151  Identities=27%  Similarity=0.441  Sum_probs=121.3

Q ss_pred             CCcCCHHhHHHHHHhhhcCCCCC-CCCCCCCCCc----cccceEeCC---C--CCEEEEEcCCCCcceeccccccCCCCC
Q 041562           31 CQACNQIDQDSLLSLGFNISSPG-LNWSSSTDCC----LWEGIKCDA---N--GRVSHLWLPWKGLTGTISLSIGNLTHL  100 (653)
Q Consensus        31 ~~~~~~~~~~~ll~~k~~~~~~~-~~W~~~~~~c----~w~gv~c~~---~--~~v~~L~L~~~~l~g~~~~~l~~l~~L  100 (653)
                      ...+.++|.+||+.+|+.+..+. .+|. +..||    .|.||.|+.   .  .+|+.|+|+++++.|.+|+.++.+++|
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~~~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L  444 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPLRFGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHL  444 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCcccCCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCC
Confidence            34566789999999999987654 5896 44442    799999952   2  259999999999999999999999999


Q ss_pred             CEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEc
Q 041562          101 SHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDL  179 (653)
Q Consensus       101 ~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L  179 (653)
                      ++|+|++|.+.|.+|..++. ++|+.|+|++|+++|.+|..+. .+++|++|+|++|.++|.+|..+.. ...++..+++
T Consensus       445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~Ls~N~l~g~iP~~l~~-~~~~~~~l~~  522 (623)
T PLN03150        445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNLNGNSLSGRVPAALGG-RLLHRASFNF  522 (623)
T ss_pred             CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEECcCCcccccCChHHhh-ccccCceEEe
Confidence            99999999999999988877 8999999999999988888654 5888888888888888888776542 2345566666


Q ss_pred             cCCcC
Q 041562          180 SNNRF  184 (653)
Q Consensus       180 s~n~l  184 (653)
                      .+|..
T Consensus       523 ~~N~~  527 (623)
T PLN03150        523 TDNAG  527 (623)
T ss_pred             cCCcc
Confidence            66643

>PLN03150 hypothetical protein; Provisional

Probab=99.35  E-value=8.8e-13  Score=146.20  Aligned_cols=103  Identities=38%  Similarity=0.613  Sum_probs=87.6

Q ss_pred             CChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCC--C
Q 041562          539 ASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG--G  616 (653)
Q Consensus       539 ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~--~  616 (653)
                      +|..++.++ .|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+.++++|++|++++|+++|.+|..  .
T Consensus       434 ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        434 IPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG  512 (623)
T ss_pred             CCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence            333444444 7899999999999999999999999999999999999999999999999999999999999999975  2


Q ss_pred             CCCCcCCCccCCCCCCCCCCCCCCCC
Q 041562          617 QFDTFPSSSFRGNPDLCGAIVQRSCS  642 (653)
Q Consensus       617 ~~~~~~~~~~~gn~~lc~~~~~~~c~  642 (653)
                      .+.......+.||+++||.|..+.|.
T Consensus       513 ~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        513 RLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             ccccCceEEecCCccccCCCCCCCCc
Confidence            22334566889999999987557785

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.29  E-value=1.3e-13  Score=140.57  Aligned_cols=194  Identities=30%  Similarity=0.468  Sum_probs=149.6

Q ss_pred             CCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEE
Q 041562          317 LKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVL  396 (653)
Q Consensus       317 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L  396 (653)
                      ..-...|++.|++. .+|..+..+..|+.+.|+.|.+. .+|..+..+..|++++|+.|+++.++..+.           
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC-----------  141 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLC-----------  141 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhh-----------
Confidence            33456677777777 67777777777888888888876 677778888888888888888776654321           


Q ss_pred             ECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEcc
Q 041562          397 IIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFS  476 (653)
Q Consensus       397 ~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  476 (653)
                                            .--|+.|.+++|+++ .+|+.++..+.|..||.+.|++. .+|..++.+.+|+.|++.
T Consensus       142 ----------------------~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vr  197 (722)
T KOG0532|consen  142 ----------------------DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVR  197 (722)
T ss_pred             ----------------------cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHh
Confidence                                  123788888888888 78888888889999999999988 677788889999999999


Q ss_pred             CCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecC
Q 041562          477 NNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLS  556 (653)
Q Consensus       477 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls  556 (653)
                      .|++. .+|+.++.                                                       +  .|..||+|
T Consensus       198 Rn~l~-~lp~El~~-------------------------------------------------------L--pLi~lDfS  219 (722)
T KOG0532|consen  198 RNHLE-DLPEELCS-------------------------------------------------------L--PLIRLDFS  219 (722)
T ss_pred             hhhhh-hCCHHHhC-------------------------------------------------------C--ceeeeecc
Confidence            99876 44444433                                                       2  37889999


Q ss_pred             CccCccccccccccCCCCCeEeCCCCeeeeecCccc---ccCCCCCeeecCCCc
Q 041562          557 HNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSL---KRLHFLSAFNVAENN  607 (653)
Q Consensus       557 ~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l---~~l~~L~~L~ls~N~  607 (653)
                      .|+++ .+|-.|.+|+.|++|-|.+|.+. ..|..+   +..+-.++|+..-++
T Consensus       220 cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             cCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            99999 78999999999999999999998 666554   345566788888774

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.19  E-value=1e-12  Score=134.10  Aligned_cols=195  Identities=29%  Similarity=0.459  Sum_probs=135.9

Q ss_pred             CCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEE
Q 041562          170 SFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL  249 (653)
Q Consensus       170 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  249 (653)
                      .+.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|+++||+.|+++ .+|..++.|+ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            3445566778888877 67777777777777777777777 67777778888888888888777 6676676664 7777


Q ss_pred             EcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562          250 ELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF  329 (653)
Q Consensus       250 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l  329 (653)
                      -+++|+++ .+|+.++.+..|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|. .+..+ .|..||++.|++
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~-El~~L-pLi~lDfScNki  223 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE-ELCSL-PLIRLDFSCNKI  223 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH-HHhCC-ceeeeecccCce
Confidence            77777776 56777777777777777777776 56667777777777777777776 4553 34433 467777777777


Q ss_pred             cccCCccCcCCCCCCeEEccCccccccCchhhcC---CCCCCEEECCCC
Q 041562          330 TGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA---LKSLSFLSLSNN  375 (653)
Q Consensus       330 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~Ls~n  375 (653)
                      . .+|..|.+++.|++|.|.+|.+. ..|..++.   ..-.++|+..-+
T Consensus       224 s-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             e-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            7 67777777777777777777776 34444332   222344554444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.16  E-value=3e-12  Score=123.72  Aligned_cols=89  Identities=25%  Similarity=0.365  Sum_probs=43.5

Q ss_pred             CCCCCCCEEEcccCCCCCC----ccccccCCCCCCEEeccCCcCccc----ccccccCCCCCcEEEcccCcCCcc----c
Q 041562          193 GSCSRLKTFRAGFNYLTGS----LPDDIYTATSLEQLSLSFNHISGS----IKNGIVNLTSLRILELYSNSLTGL----I  260 (653)
Q Consensus       193 ~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~  260 (653)
                      ++-+.|+++..+.|.+...    +...|...+.|+.+.++.|.|...    +...+..+++|++|||.+|.++..    +
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            3345566666666655431    222344445666666666655421    123345555666666666555422    1


Q ss_pred             CccccCCCCCCeEEeecCcCc
Q 041562          261 PRDIGKLTNLESLVLHNNSLS  281 (653)
Q Consensus       261 p~~l~~l~~L~~L~L~~n~l~  281 (653)
                      ...+..+++|+.|++++|.+.
T Consensus       234 akaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHhcccchheeecccccccc
Confidence            122334445555555555444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=6.9e-11  Score=125.39  Aligned_cols=173  Identities=35%  Similarity=0.480  Sum_probs=68.2

Q ss_pred             CCCEEEccCCcCccCCCccCCCCC-CCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEc
Q 041562          173 SIRHLDLSNNRFTGPVPLGLGSCS-RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILEL  251 (653)
Q Consensus       173 ~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  251 (653)
                      .++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|...+..+.|+.|++
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            3444444444443 2333333332 4444444444444 23333444444444444444444 23333334444444444


Q ss_pred             ccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccc
Q 041562          252 YSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG  331 (653)
Q Consensus       252 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~  331 (653)
                      ++|++. .+|..+.....|+++.+++|.+. ..+..+.++.++..+.+.+|++.. ++ ..++.++.++.|++++|.++.
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~-~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LP-ESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-cc-chhccccccceeccccccccc
Confidence            444444 22333233333444444444322 223334444444444444444331 11 123333444444444444432


Q ss_pred             cCCccCcCCCCCCeEEccCcccc
Q 041562          332 SLPITLNSCKSLTAVNLARNQLE  354 (653)
Q Consensus       332 ~~~~~l~~l~~L~~L~L~~n~l~  354 (653)
                       ++. ++...+++.|++++|.+.
T Consensus       270 -i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         270 -ISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             -ccc-ccccCccCEEeccCcccc
Confidence             111 333444444444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.3e-11  Score=122.49  Aligned_cols=138  Identities=25%  Similarity=0.223  Sum_probs=77.0

Q ss_pred             cCCCCcCEEEccCCcccccCC-ccCcCCCCCCeEEccCccccccC--chhhcCCCCCCEEECCCCCCCCCCcchhhccCC
Q 041562          314 STLLKLRVLDLGSNLFTGSLP-ITLNSCKSLTAVNLARNQLEGQI--SPGIVALKSLSFLSLSNNSLTNITGAIRILMGC  390 (653)
Q Consensus       314 ~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l  390 (653)
                      +++.+|+.+.|.++.+..... .....|++++.|+|+.|-+....  ......+++|+.|+++.|.+....+        
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~--------  189 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS--------  189 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc--------
Confidence            455667777777666542111 23445666666666666554221  1223345566666666665543221        


Q ss_pred             CCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCccc-chhhhcCCccCCeeeCcCCcCccCCchhhcCCCC
Q 041562          391 KNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQ-VPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSS  469 (653)
Q Consensus       391 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  469 (653)
                                        ....    ..+++|+.|.|+.|.++.. +...+..+|+|+.|+|.+|.....-......+..
T Consensus       190 ------------------s~~~----~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~  247 (505)
T KOG3207|consen  190 ------------------SNTT----LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT  247 (505)
T ss_pred             ------------------ccch----hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence                              1111    1356777888888877632 3334456778888888887533232333445667


Q ss_pred             CCEEEccCCcCc
Q 041562          470 LFHIDFSNNLIS  481 (653)
Q Consensus       470 L~~L~Ls~N~l~  481 (653)
                      |+.|||++|++.
T Consensus       248 L~~LdLs~N~li  259 (505)
T KOG3207|consen  248 LQELDLSNNNLI  259 (505)
T ss_pred             HhhccccCCccc
Confidence            788888888765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.5e-11  Score=122.03  Aligned_cols=160  Identities=22%  Similarity=0.216  Sum_probs=94.0

Q ss_pred             CCcCEEEccCCCCCCCCc-hHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCc-cCCCCCCC
Q 041562          121 NYIKIIDLSSNHFQGKIP-STIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPL-GLGSCSRL  198 (653)
Q Consensus       121 ~~L~~L~Ls~n~l~~~ip-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L  198 (653)
                      ++|+.+.|.++.+. ..+ .+....+++++.|||+.|-|....+..-....+++|+.|+++.|++...... .-..+++|
T Consensus       121 kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  121 KKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            67888888888876 333 2456678999999999998887666555556788999999999887632221 11245666


Q ss_pred             CEEEcccCCCCCC-ccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCccc-CccccCCCCCCeEEee
Q 041562          199 KTFRAGFNYLTGS-LPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLI-PRDIGKLTNLESLVLH  276 (653)
Q Consensus       199 ~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~  276 (653)
                      +.|.++.|.++-. +-..+..+++|+.|+|..|............+..|+.|||++|.+.... -...+.++.|+.|+++
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            6666666665521 1122334566666666666422222233334455556666655554221 0223445555555555


Q ss_pred             cCcCc
Q 041562          277 NNSLS  281 (653)
Q Consensus       277 ~n~l~  281 (653)
                      .+.+.
T Consensus       280 ~tgi~  284 (505)
T KOG3207|consen  280 STGIA  284 (505)
T ss_pred             ccCcc
Confidence            55544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=7.2e-11  Score=125.23  Aligned_cols=193  Identities=31%  Similarity=0.408  Sum_probs=100.7

Q ss_pred             EEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCC-CCCEEeccCCcCcccccccccCCCCCcEEEcccC
Q 041562          176 HLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTAT-SLEQLSLSFNHISGSIKNGIVNLTSLRILELYSN  254 (653)
Q Consensus       176 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  254 (653)
                      .++++.+.+.. ....+..++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            35555555431 1223334466666666666666 4555555553 6666666666665 44455666666666666666


Q ss_pred             cCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCC
Q 041562          255 SLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLP  334 (653)
Q Consensus       255 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~  334 (653)
                      ++.. +|...+..++|+.|++++|++. .+|........|++|.+++|.....+.  .+..+.++..+.+.+|++. ..+
T Consensus       174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~~~-~~~  248 (394)
T COG4886         174 DLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLE-DLP  248 (394)
T ss_pred             hhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecch--hhhhcccccccccCCceee-ecc
Confidence            6653 3333335566666666666665 444444444446666666663221221  3445555555555555554 224


Q ss_pred             ccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562          335 ITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT  378 (653)
Q Consensus       335 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  378 (653)
                      ..+..+++++.|++++|.++... . ++.+.+++.|++++|.+.
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i~-~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSIS-S-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             chhccccccceeccccccccccc-c-ccccCccCEEeccCcccc
Confidence            44445555555555555554222 1 444555555555555444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.12  E-value=5.7e-12  Score=121.80  Aligned_cols=232  Identities=22%  Similarity=0.211  Sum_probs=163.8

Q ss_pred             CCCEEEEEcCCCCcce----eccccccCCCCCCEEECCCC---CCCCCCCcccc--------CCCcCEEEccCCCCCCCC
Q 041562           73 NGRVSHLWLPWKGLTG----TISLSIGNLTHLSHLNLSHN---RLSGEFPSSLS--------SNYIKIIDLSSNHFQGKI  137 (653)
Q Consensus        73 ~~~v~~L~L~~~~l~g----~~~~~l~~l~~L~~L~Ls~n---~~~~~~p~~~~--------~~~L~~L~Ls~n~l~~~i  137 (653)
                      ...++.|+|++|.+.-    .+.+.+.+.++|+..++|.-   +....+|+.+.        .++|++||||+|-|.-..
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            3479999999998864    45677888899999999863   22334555432        269999999999987555


Q ss_pred             ch---HHHhcCCCCcEEEccCCcCcccCChhhh-----------hcCCCCCCEEEccCCcCccC----CCccCCCCCCCC
Q 041562          138 PS---TIFRLTQNLITFNVSNNSFTGLISWSAW-----------VDSFCSIRHLDLSNNRFTGP----VPLGLGSCSRLK  199 (653)
Q Consensus       138 p~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----------~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~  199 (653)
                      +.   .+.+.+..|++|+|.+|.+.-.-...++           ...-+.||++....|++...    +...|...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            44   3456789999999999977532211111           12457899999999998742    234567789999


Q ss_pred             EEEcccCCCCCC----ccccccCCCCCCEEeccCCcCcc----cccccccCCCCCcEEEcccCcCCcccCcccc-----C
Q 041562          200 TFRAGFNYLTGS----LPDDIYTATSLEQLSLSFNHISG----SIKNGIVNLTSLRILELYSNSLTGLIPRDIG-----K  266 (653)
Q Consensus       200 ~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~i~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~  266 (653)
                      .+.+..|.|...    +...+..+++|+.|||.+|.++.    .+...+..+++|+.|++++|.+.......|.     .
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~  268 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES  268 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence            999999988632    33457789999999999998874    3446677889999999999998865433332     3


Q ss_pred             CCCCCeEEeecCcCccc----CCccccCCCCCcEEEccCCcC
Q 041562          267 LTNLESLVLHNNSLSGS----LPSSLKNCINLTLLNLQSNFF  304 (653)
Q Consensus       267 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l  304 (653)
                      .++|++|.+.+|.++..    +...+...+.|+.|+|++|.+
T Consensus       269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            56777888777777521    112233456666666666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.05  E-value=3.5e-11  Score=113.65  Aligned_cols=110  Identities=27%  Similarity=0.342  Sum_probs=74.6

Q ss_pred             ccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCC
Q 041562          264 IGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSL  343 (653)
Q Consensus       264 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  343 (653)
                      +.....|+++||++|.++ .+.++..-.|.++.|++++|.+. .+.  .+..+++|+.|||++|.++ .+..+-..+.++
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI  354 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence            334556777777777776 55566666777777777777776 444  4667777777777777776 344444556677


Q ss_pred             CeEEccCccccccCchhhcCCCCCCEEECCCCCCCCC
Q 041562          344 TAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNI  380 (653)
Q Consensus       344 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  380 (653)
                      ++|.|++|.+..  -..+..+-+|..||+++|++..+
T Consensus       355 KtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~l  389 (490)
T KOG1259|consen  355 KTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEEL  389 (490)
T ss_pred             eeeehhhhhHhh--hhhhHhhhhheeccccccchhhH
Confidence            777777777752  24566667777777777777654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=9e-11  Score=110.88  Aligned_cols=131  Identities=26%  Similarity=0.293  Sum_probs=66.3

Q ss_pred             CCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEE
Q 041562          244 TSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLD  323 (653)
Q Consensus       244 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~  323 (653)
                      +.|+++||++|.++ .+.++..-.|.++.|++++|.+...  ..++.+++|+.||+++|.++ .+.. .-..+-+++.|.
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~G-wh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVG-WHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhh-hHhhhcCEeeee
Confidence            44555555555555 2334444455555555555555522  22555555555555555554 2221 223445555555


Q ss_pred             ccCCcccccCCccCcCCCCCCeEEccCcccccc-CchhhcCCCCCCEEECCCCCCCCCC
Q 041562          324 LGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQ-ISPGIVALKSLSFLSLSNNSLTNIT  381 (653)
Q Consensus       324 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~  381 (653)
                      |++|.+..  -..++.+-+|..||+++|+|... -...++++|.|+.+.|.+|.+..++
T Consensus       359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            65555531  12344455555566666655421 1134556666666666666665443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.96  E-value=3.3e-10  Score=103.10  Aligned_cols=83  Identities=39%  Similarity=0.526  Sum_probs=17.7

Q ss_pred             CCCcEEEccCCcCccccChhhcc-CCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhh-cCCCCCCE
Q 041562          292 INLTLLNLQSNFFEGDISVFNFS-TLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI-VALKSLSF  369 (653)
Q Consensus       292 ~~L~~L~L~~n~l~~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~  369 (653)
                      .++++|+|.+|.++ .|.  .++ .+.+|+.|++++|.++. + ..+..++.|++|++++|+++. +.+.+ ..+++|++
T Consensus        19 ~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   19 VKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred             cccccccccccccc-ccc--chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence            34445555555444 232  222 24455555555555542 1 134445555555555555553 22222 24556666


Q ss_pred             EECCCCCCCCC
Q 041562          370 LSLSNNSLTNI  380 (653)
Q Consensus       370 L~Ls~n~l~~~  380 (653)
                      |++++|++..+
T Consensus        93 L~L~~N~I~~l  103 (175)
T PF14580_consen   93 LYLSNNKISDL  103 (175)
T ss_dssp             EE-TTS---SC
T ss_pred             EECcCCcCCCh
Confidence            66666665544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.96  E-value=2.8e-10  Score=103.59  Aligned_cols=60  Identities=37%  Similarity=0.490  Sum_probs=13.1

Q ss_pred             CCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccc-cCCCCCcEEEccCCcCc
Q 041562          243 LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL-KNCINLTLLNLQSNFFE  305 (653)
Q Consensus       243 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~  305 (653)
                      +.+|+.|++++|.++..  +.+..+++|++|++++|+++. +.+.+ ..+++|++|++++|++.
T Consensus        41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~  101 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKIS  101 (175)
T ss_dssp             -TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---
T ss_pred             hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCC
Confidence            34444444444444432  233444444444444444442 22222 23444444444444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.93  E-value=9.6e-10  Score=124.72  Aligned_cols=126  Identities=23%  Similarity=0.318  Sum_probs=58.2

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCcCEEEccCCC--CCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCC
Q 041562           98 THLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNH--FQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIR  175 (653)
Q Consensus        98 ~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~--l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~  175 (653)
                      ...|...+-+|.+. .++.....++|+.|-+..|.  +. .++..+|..++.|++|||++|.=-+..|..++  .+-+||
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~--~Li~Lr  598 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG--ELVHLR  598 (889)
T ss_pred             hheeEEEEeccchh-hccCCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHh--hhhhhh
Confidence            44555555555543 23333333455555555554  33 45555555555555555555443333443332  344444


Q ss_pred             EEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEecc
Q 041562          176 HLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLS  228 (653)
Q Consensus       176 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  228 (653)
                      +|++++..+. .+|..+++++.|.+|++..+.....+|.....+++|++|.+.
T Consensus       599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence            4444444444 444444444444444444443333333333334444444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.89  E-value=9.5e-10  Score=124.77  Aligned_cols=107  Identities=26%  Similarity=0.192  Sum_probs=55.6

Q ss_pred             CCCCCEEEccCCc--CccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcE
Q 041562          171 FCSIRHLDLSNNR--FTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRI  248 (653)
Q Consensus       171 l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~  248 (653)
                      ++.|++|-+..|.  +.......|..++.|++||+++|.--+.+|..++++-+|++|+++++.+. .+|..+.+++.|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            3345555555553  22222223445555555555555444455555555555555555555555 55555555555555


Q ss_pred             EEcccCcCCcccCccccCCCCCCeEEeecC
Q 041562          249 LELYSNSLTGLIPRDIGKLTNLESLVLHNN  278 (653)
Q Consensus       249 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  278 (653)
                      |++..+.....+|.....+.+|++|.+...
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeecc
Confidence            555555444344444444555555555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.86  E-value=2.8e-10  Score=120.86  Aligned_cols=175  Identities=27%  Similarity=0.346  Sum_probs=78.6

Q ss_pred             CCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCC
Q 041562          192 LGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLE  271 (653)
Q Consensus       192 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  271 (653)
                      +..+++|+.+++.+|.+.. +...+..+++|++|++++|.|+..  ..+..++.|+.|++++|.+...  ..+..++.|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhh
Confidence            3344444444444444442 221134445555555555555422  2234444455555555555433  2344455555


Q ss_pred             eEEeecCcCcccCC-ccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCC--CCCeEEc
Q 041562          272 SLVLHNNSLSGSLP-SSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCK--SLTAVNL  348 (653)
Q Consensus       272 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L  348 (653)
                      .+++++|++...-+ . +..+.+++.+++.+|.+. .+.  .+..+..+..+++..|.++..-+  +....  .|+.+++
T Consensus       166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~--~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l  239 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIE--GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYL  239 (414)
T ss_pred             cccCCcchhhhhhhhh-hhhccchHHHhccCCchh-ccc--chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhc
Confidence            55555555553222 1 344555555555555554 222  22233333334555555542211  11112  2555555


Q ss_pred             cCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562          349 ARNQLEGQISPGIVALKSLSFLSLSNNSLT  378 (653)
Q Consensus       349 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  378 (653)
                      ++|++.. .+..+..+..+..+++.+|++.
T Consensus       240 ~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  240 SGNRISR-SPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             ccCcccc-ccccccccccccccchhhcccc
Confidence            5555542 2233444555555555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=1.8e-09  Score=80.71  Aligned_cols=60  Identities=40%  Similarity=0.551  Sum_probs=56.7

Q ss_pred             ccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcc
Q 041562          549 LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNL  608 (653)
Q Consensus       549 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  608 (653)
                      +|++|++++|+++...++.|..+++|++||+++|+++...|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            799999999999977778999999999999999999988888999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.84  E-value=2.7e-10  Score=121.06  Aligned_cols=246  Identities=30%  Similarity=0.317  Sum_probs=133.9

Q ss_pred             CCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeE
Q 041562          194 SCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESL  273 (653)
Q Consensus       194 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  273 (653)
                      .+..++.+.+..|.+.. +-..+..+++|+.|++.+|.|.. +...+..+++|++|++++|.++..  ..+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence            34445555555555552 33345667777777777777763 333366677777777777777755  345666667777


Q ss_pred             EeecCcCcccCCccccCCCCCcEEEccCCcCccccCh-hhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcc
Q 041562          274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISV-FNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQ  352 (653)
Q Consensus       274 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  352 (653)
                      ++++|.++..  ..+..++.|+.+++++|.+. .+.. . ...+.+++.+++.+|.+..  ...+..+..+..+++..|.
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~  219 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNK  219 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccc
Confidence            7777777632  34555677777777777766 3331 1 3556666666676666642  2223333444444566665


Q ss_pred             ccccCchhhcCCCC--CCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCC
Q 041562          353 LEGQISPGIVALKS--LSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAEC  430 (653)
Q Consensus       353 l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n  430 (653)
                      ++..-+  +..+..  |+.+++++|.+..++   ..+.                             .+..+..|++.+|
T Consensus       220 i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~---~~~~-----------------------------~~~~l~~l~~~~n  265 (414)
T KOG0531|consen  220 ISKLEG--LNELVMLHLRELYLSGNRISRSP---EGLE-----------------------------NLKNLPVLDLSSN  265 (414)
T ss_pred             ceeccC--cccchhHHHHHHhcccCcccccc---cccc-----------------------------ccccccccchhhc
Confidence            542211  112222  556666666555332   1122                             3455555666666


Q ss_pred             cCcccchhhhcCCccCCeeeCcCCcCccC---Cch-hhcCCCCCCEEEccCCcCcccCC
Q 041562          431 KLKGQVPSWIGKLKKLQVLDLSFNQLTGS---VPR-FLGNMSSLFHIDFSNNLISGEFP  485 (653)
Q Consensus       431 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~---~~~-~~~~l~~L~~L~Ls~N~l~~~~p  485 (653)
                      ++...  ..+...+.+..+....|++...   ... .....+.++.+.+..|.+....+
T Consensus       266 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  266 RISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            55422  1233344555555555554421   111 13455666667777776654433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.70  E-value=1.1e-08  Score=76.39  Aligned_cols=61  Identities=38%  Similarity=0.484  Sum_probs=54.2

Q ss_pred             CCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcC
Q 041562          420 KNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLI  480 (653)
Q Consensus       420 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  480 (653)
                      ++|++|++++|+++...+..|..+++|++|++++|++....+..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688999999999966667889999999999999999988888899999999999999975

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.67  E-value=2.4e-08  Score=68.13  Aligned_cols=36  Identities=33%  Similarity=0.894  Sum_probs=27.1

Q ss_pred             HHhHHHHHHhhhcCCC-CC---CCCCCC--CCCccccceEeC
Q 041562           36 QIDQDSLLSLGFNISS-PG---LNWSSS--TDCCLWEGIKCD   71 (653)
Q Consensus        36 ~~~~~~ll~~k~~~~~-~~---~~W~~~--~~~c~w~gv~c~   71 (653)
                      ++|++||++||+++.. +.   .+|+..  .+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            5799999999999985 42   799875  799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=2e-09  Score=101.98  Aligned_cols=202  Identities=18%  Similarity=0.144  Sum_probs=117.2

Q ss_pred             CEEEEEcCCCCccee-ccccccCC-CCCCEEECCCCCCCCCCCc-cccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcE
Q 041562           75 RVSHLWLPWKGLTGT-ISLSIGNL-THLSHLNLSHNRLSGEFPS-SLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLIT  150 (653)
Q Consensus        75 ~v~~L~L~~~~l~g~-~~~~l~~l-~~L~~L~Ls~n~~~~~~p~-~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  150 (653)
                      .|..+.+...-.... +.+.+.-+ +.|++||||...++..--. .+.. .+|+.|.|.++++.+.|-..+.. -.+|+.
T Consensus       160 gV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~  238 (419)
T KOG2120|consen  160 GVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVR  238 (419)
T ss_pred             CeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-ccccee
Confidence            366666654333222 22222222 2477777777766532111 1122 67777777777777666665554 567777


Q ss_pred             EEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCc-cCCC-CCCCCEEEcccCCCC---CCccccccCCCCCCEE
Q 041562          151 FNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPL-GLGS-CSRLKTFRAGFNYLT---GSLPDDIYTATSLEQL  225 (653)
Q Consensus       151 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~-l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L  225 (653)
                      |+++.+.=-..........+++.|..|+++.|.+....-. .+.. -++|+.|+++++.-.   ..+..-...+++|.+|
T Consensus       239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L  318 (419)
T KOG2120|consen  239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL  318 (419)
T ss_pred             eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence            7777664322233334445677788888887776542211 1111 256777777765321   1222234567888888


Q ss_pred             eccCCc-CcccccccccCCCCCcEEEcccCcCCcccCcc---ccCCCCCCeEEeecCc
Q 041562          226 SLSFNH-ISGSIKNGIVNLTSLRILELYSNSLTGLIPRD---IGKLTNLESLVLHNNS  279 (653)
Q Consensus       226 ~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~  279 (653)
                      ||++|. ++......|.+++.|++|.++.|..  .+|..   +...+.|.+|+..++-
T Consensus       319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            888774 3333345567888888888888753  44543   4567888888887753

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.49  E-value=1.5e-09  Score=114.11  Aligned_cols=128  Identities=27%  Similarity=0.299  Sum_probs=93.0

Q ss_pred             CCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccc
Q 041562          420 KNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQD  499 (653)
Q Consensus       420 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~  499 (653)
                      -.|...+.+.|.+. .....+.-++.|+.|+|++|+++..  +.+..++.|+.|||++|.+. .+|.       +.   .
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~-------l~---~  229 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQ-------LS---M  229 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccc-------cc---h
Confidence            45777788888887 5667788888999999999999854  36888999999999999886 2321       00   0


Q ss_pred             cccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeC
Q 041562          500 KNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDL  579 (653)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdL  579 (653)
                                                                  ..+  .|+.|++++|.++..  ..+.++++|+-||+
T Consensus       230 --------------------------------------------~gc--~L~~L~lrnN~l~tL--~gie~LksL~~LDl  261 (1096)
T KOG1859|consen  230 --------------------------------------------VGC--KLQLLNLRNNALTTL--RGIENLKSLYGLDL  261 (1096)
T ss_pred             --------------------------------------------hhh--hheeeeecccHHHhh--hhHHhhhhhhccch
Confidence                                                        000  577888888888733  45778888888888


Q ss_pred             CCCeeeeecC-cccccCCCCCeeecCCCccc
Q 041562          580 SKNHLSGEIP-VSLKRLHFLSAFNVAENNLR  609 (653)
Q Consensus       580 s~N~l~~~ip-~~l~~l~~L~~L~ls~N~l~  609 (653)
                      |+|-|++--- .-+..|.+|+.|+|.+|++.
T Consensus       262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            8888875211 22456777888888888874

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.43  E-value=3.7e-09  Score=111.37  Aligned_cols=125  Identities=27%  Similarity=0.319  Sum_probs=57.3

Q ss_pred             CCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCcc-ccCCCCCCeEEee
Q 041562          198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRD-IGKLTNLESLVLH  276 (653)
Q Consensus       198 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~  276 (653)
                      |.+.+.+.|.+. .+-.++.-++.|+.|+|+.|+++..  +.+..+++|++|||++|.+.. +|.. ...+ +|..|.++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-hheeeeec
Confidence            333444444444 2333344445555555555555422  245555555555555555542 2211 1112 25555555


Q ss_pred             cCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562          277 NNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF  329 (653)
Q Consensus       277 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l  329 (653)
                      +|.++..  ..+.++.+|+.||+++|-+.+.-....++.+..|+.|+|.+|.+
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            5555422  23455555555555555554322222333444455555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.36  E-value=3.6e-08  Score=92.35  Aligned_cols=187  Identities=20%  Similarity=0.222  Sum_probs=91.6

Q ss_pred             ccCCCCCCEEECCCCCCCCCCCcccc----C-CCcCEEEccCCCC---CCCCchHH------HhcCCCCcEEEccCCcCc
Q 041562           94 IGNLTHLSHLNLSHNRLSGEFPSSLS----S-NYIKIIDLSSNHF---QGKIPSTI------FRLTQNLITFNVSNNSFT  159 (653)
Q Consensus        94 l~~l~~L~~L~Ls~n~~~~~~p~~~~----~-~~L~~L~Ls~n~l---~~~ip~~~------~~~l~~L~~L~Ls~n~l~  159 (653)
                      +..+..++.+|||+|.|.......+.    + .+|++.+++.-..   ...+|..+      .-.|++|+..+||.|.|.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            34456666666666666544333332    2 5666666665321   12223221      224677777777777766


Q ss_pred             ccCChhh--hhcCCCCCCEEEccCCcCccCCCc-------------cCCCCCCCCEEEcccCCCCCCccc-----cccCC
Q 041562          160 GLISWSA--WVDSFCSIRHLDLSNNRFTGPVPL-------------GLGSCSRLKTFRAGFNYLTGSLPD-----DIYTA  219 (653)
Q Consensus       160 ~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~~p~-----~l~~l  219 (653)
                      ...|..+  ...+-+.|.+|.+++|.+.-..-.             ...+-+.|++.....|++.. .|.     .+..-
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh  184 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESH  184 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhh
Confidence            5554433  233556677777777765421111             12344566666666666542 111     11112


Q ss_pred             CCCCEEeccCCcCcccc-----cccccCCCCCcEEEcccCcCCccc----CccccCCCCCCeEEeecCcCc
Q 041562          220 TSLEQLSLSFNHISGSI-----KNGIVNLTSLRILELYSNSLTGLI----PRDIGKLTNLESLVLHNNSLS  281 (653)
Q Consensus       220 ~~L~~L~Ls~n~i~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~  281 (653)
                      ..|+++.+..|.|.-..     -..+..+++|+.||+.+|.++-..    ...+...+.|+.|.+.+|-++
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            35666666666554110     012234556666666666554221    112233444555555555444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.33  E-value=3.5e-08  Score=82.95  Aligned_cols=77  Identities=23%  Similarity=0.378  Sum_probs=39.7

Q ss_pred             cCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCCCCCCcCCCccCCC
Q 041562          550 LHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGN  629 (653)
Q Consensus       550 L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn  629 (653)
                      ++.|+|++|+|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|..|+.-.|.+. +||..-...+.++..-.||
T Consensus        79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgn  155 (177)
T KOG4579|consen   79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGN  155 (177)
T ss_pred             hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcC
Confidence            445555555555 44555555556666666666555 44444555555555555555554 5554433333333333344

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.2e-08  Score=96.86  Aligned_cols=177  Identities=23%  Similarity=0.223  Sum_probs=90.4

Q ss_pred             CCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCc-Ccc-cccccccCCCCCcEE
Q 041562          173 SIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH-ISG-SIKNGIVNLTSLRIL  249 (653)
Q Consensus       173 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-i~~-~~~~~l~~l~~L~~L  249 (653)
                      .|++||||...++. .....+..|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++. ...-.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            35555555555442 122234455566666666666665555556666666666666543 221 111224556666666


Q ss_pred             EcccCcCCcccCccc-cC-CCCCCeEEeecCcCc---ccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEc
Q 041562          250 ELYSNSLTGLIPRDI-GK-LTNLESLVLHNNSLS---GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDL  324 (653)
Q Consensus       250 ~L~~n~l~~~~p~~l-~~-l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L  324 (653)
                      ++++|.+....-..+ .. -++|+.|+|+++.-.   ..+..-...+++|.+|||++|..-..--...|-.++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            666665543321111 11 145666666665321   1111123456777777777664321211124556677777777


Q ss_pred             cCCcccccCCc---cCcCCCCCCeEEccCc
Q 041562          325 GSNLFTGSLPI---TLNSCKSLTAVNLARN  351 (653)
Q Consensus       325 ~~n~l~~~~~~---~l~~l~~L~~L~L~~n  351 (653)
                      +.|..  .+|.   .+...+.|.+|+..++
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            77653  2333   2455667777777654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=1.7e-07  Score=89.09  Aligned_cols=86  Identities=22%  Similarity=0.267  Sum_probs=64.9

Q ss_pred             CCEEEEEcCCCCcce--eccccccCCCCCCEEECCCCCCCCCCCcc-ccCCCcCEEEccCCCCCCCCchHHHhcCCCCcE
Q 041562           74 GRVSHLWLPWKGLTG--TISLSIGNLTHLSHLNLSHNRLSGEFPSS-LSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLIT  150 (653)
Q Consensus        74 ~~v~~L~L~~~~l~g--~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  150 (653)
                      .+|..+||.+|.++.  .+..-+.++|+|++|+|+.|.+...|-.. ....+|++|-|.+..+.-.-.......+|.+++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            378899999998874  45566788999999999999987655433 333889999998888765445556667788888


Q ss_pred             EEccCCcCc
Q 041562          151 FNVSNNSFT  159 (653)
Q Consensus       151 L~Ls~n~l~  159 (653)
                      |.++.|++.
T Consensus       151 lHmS~N~~r  159 (418)
T KOG2982|consen  151 LHMSDNSLR  159 (418)
T ss_pred             hhhccchhh
Confidence            888887543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=4.9e-07  Score=86.04  Aligned_cols=179  Identities=17%  Similarity=0.178  Sum_probs=78.8

Q ss_pred             CCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCC-ccccccCCCCCC
Q 041562          145 TQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGS-LPDDIYTATSLE  223 (653)
Q Consensus       145 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~  223 (653)
                      ++.++.+||.+|.++..-.......++|.|++|+++.|.+...+...-....+|++|-|.+..+.-. .-..+..++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            3444455555554444322222233455555555555555432222112344555555555444321 112234455555


Q ss_pred             EEeccCCcCcccc--ccc----------ccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccC-CccccC
Q 041562          224 QLSLSFNHISGSI--KNG----------IVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSL-PSSLKN  290 (653)
Q Consensus       224 ~L~Ls~n~i~~~~--~~~----------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~  290 (653)
                      +|.++.|.+....  .+.          +...+.+..+..+-|++...       ++++..+.+..|.+...- ......
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-------Fpnv~sv~v~e~PlK~~s~ek~se~  222 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-------FPNVNSVFVCEGPLKTESSEKGSEP  222 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-------cccchheeeecCcccchhhcccCCC
Confidence            5555555322100  000          11111222222222222222       345666666666554221 123444


Q ss_pred             CCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562          291 CINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       291 l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      ++.+..|+|+.|++..--....+..++.|..|.++++.+.
T Consensus       223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            5555566666666654333345566666666666666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.11  E-value=1.6e-07  Score=79.13  Aligned_cols=138  Identities=25%  Similarity=0.333  Sum_probs=103.8

Q ss_pred             CCcCEEEccCCcCcccchhh---hcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCc
Q 041562          420 KNLQVLGLAECKLKGQVPSW---IGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTP  496 (653)
Q Consensus       420 ~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  496 (653)
                      ..+..++|+.|++- .+++.   +.....|+..+|++|.+....+..-...+..+.|++++|.++ .+|++++.      
T Consensus        27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa------   98 (177)
T KOG4579|consen   27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAA------   98 (177)
T ss_pred             HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhh------
Confidence            34677889999876 44443   445567777899999998554444456678999999999987 45554444      


Q ss_pred             ccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCe
Q 041562          497 EQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLER  576 (653)
Q Consensus       497 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  576 (653)
                                                                       ++ .|+.|+++.|.+. ..|..+..+.++-.
T Consensus        99 -------------------------------------------------m~-aLr~lNl~~N~l~-~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   99 -------------------------------------------------MP-ALRSLNLRFNPLN-AEPRVIAPLIKLDM  127 (177)
T ss_pred             -------------------------------------------------hH-HhhhcccccCccc-cchHHHHHHHhHHH
Confidence                                                             44 7889999999999 77888888999999


Q ss_pred             EeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCCC
Q 041562          577 MDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQ  617 (653)
Q Consensus       577 LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~  617 (653)
                      ||.-+|.+. +||..+-.-+.....++.++++.+.-|.+.|
T Consensus       128 Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq  167 (177)
T KOG4579|consen  128 LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ  167 (177)
T ss_pred             hcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence            999999998 7887654444445557788889888777654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.90  E-value=6.8e-06  Score=91.42  Aligned_cols=180  Identities=16%  Similarity=0.157  Sum_probs=107.3

Q ss_pred             CEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCC-------------cccc---CCCcCEEEccCCCC-CCCC
Q 041562           75 RVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFP-------------SSLS---SNYIKIIDLSSNHF-QGKI  137 (653)
Q Consensus        75 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p-------------~~~~---~~~L~~L~Ls~n~l-~~~i  137 (653)
                      .++.+++.+..+....-..+.... |+.|.|.+-......-             ..+.   ..+|++||+++... ....
T Consensus        61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W  139 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW  139 (699)
T ss_pred             eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence            467777776655544444444444 7777776543221110             0011   17899999988643 3455


Q ss_pred             chHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCC-Cccccc
Q 041562          138 PSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG-SLPDDI  216 (653)
Q Consensus       138 p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l  216 (653)
                      |..+...+|.|+.|.+++-.+...--...+ .++++|+.||+|+++++..  ..++++++|++|.+.+=.+.. ..-..+
T Consensus       140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc-~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~L  216 (699)
T KOG3665|consen  140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLC-ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDL  216 (699)
T ss_pred             HHHHhhhCcccceEEecCceecchhHHHHh-hccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHH
Confidence            666777889999999888766544322222 3788888888888888743  567788888888776655542 222346


Q ss_pred             cCCCCCCEEeccCCcCcccc--c----ccccCCCCCcEEEcccCcCCc
Q 041562          217 YTATSLEQLSLSFNHISGSI--K----NGIVNLTSLRILELYSNSLTG  258 (653)
Q Consensus       217 ~~l~~L~~L~Ls~n~i~~~~--~----~~l~~l~~L~~L~L~~n~l~~  258 (653)
                      .++++|+.||+|........  .    +.-..+++|+.||.+++.+.+
T Consensus       217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            67777777777765443211  0    111234555555555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.88  E-value=5.7e-06  Score=77.96  Aligned_cols=240  Identities=18%  Similarity=0.157  Sum_probs=125.0

Q ss_pred             cccCCCCCcEEEcccCcCCcccC----ccccCCCCCCeEEeecCcC---cccCC-------ccccCCCCCcEEEccCCcC
Q 041562          239 GIVNLTSLRILELYSNSLTGLIP----RDIGKLTNLESLVLHNNSL---SGSLP-------SSLKNCINLTLLNLQSNFF  304 (653)
Q Consensus       239 ~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l---~~~~p-------~~l~~l~~L~~L~L~~n~l  304 (653)
                      .+..+..++.++||+|.+...-.    ..+++-.+|+..+++.-..   ...++       ..+.+||.|+.++|++|.+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            34557788899999998875433    3344556777777766322   11222       2356788888888888877


Q ss_pred             ccccCh---hhccCCCCcCEEEccCCcccccCCc-------------cCcCCCCCCeEEccCccccccCc----hhhcCC
Q 041562          305 EGDISV---FNFSTLLKLRVLDLGSNLFTGSLPI-------------TLNSCKSLTAVNLARNQLEGQIS----PGIVAL  364 (653)
Q Consensus       305 ~~~i~~---~~~~~l~~L~~L~L~~n~l~~~~~~-------------~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l  364 (653)
                      ....+.   ..++.-..|++|.+++|.+...-..             ....-|.|+++....|++.....    ..+..-
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh  184 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH  184 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence            654442   1345667788888888766421111             12234567777777776642211    112223


Q ss_pred             CCCCEEECCCCCCCCCCcch-----hhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhh
Q 041562          365 KSLSFLSLSNNSLTNITGAI-----RILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSW  439 (653)
Q Consensus       365 ~~L~~L~Ls~n~l~~~~~~~-----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~  439 (653)
                      ..|+.+.+..|.|.  |..+     ..+..+++|+.|++..|.++..-..... .....++.|++|.+.+|-++..-...
T Consensus       185 ~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La-~al~~W~~lrEL~lnDClls~~G~~~  261 (388)
T COG5238         185 ENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA-DALCEWNLLRELRLNDCLLSNEGVKS  261 (388)
T ss_pred             cCceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH-HHhcccchhhhccccchhhccccHHH
Confidence            46666666666665  2211     2234456666666666655432111100 11123344566666666554332221


Q ss_pred             h----c--CCccCCeeeCcCCcCccCCchh------h-cCCCCCCEEEccCCcCc
Q 041562          440 I----G--KLKKLQVLDLSFNQLTGSVPRF------L-GNMSSLFHIDFSNNLIS  481 (653)
Q Consensus       440 l----~--~l~~L~~L~Ls~n~l~~~~~~~------~-~~l~~L~~L~Ls~N~l~  481 (653)
                      +    .  ..|+|..|...+|.+.+.+-..      . .++|-|..|.+.+|+|.
T Consensus       262 v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         262 VLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             HHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            1    1  2455556666665544322111      1 23445555555555553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=9.2e-06  Score=55.48  Aligned_cols=36  Identities=44%  Similarity=0.711  Sum_probs=26.9

Q ss_pred             ccCeeecCCccCccccccccccCCCCCeEeCCCCeee
Q 041562          549 LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLS  585 (653)
Q Consensus       549 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  585 (653)
                      .|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5788888888888 46666788888888888888887

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.81  E-value=1e-05  Score=55.22  Aligned_cols=37  Identities=35%  Similarity=0.643  Sum_probs=32.5

Q ss_pred             CCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCccc
Q 041562          572 TNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR  609 (653)
Q Consensus       572 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  609 (653)
                      ++|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            57999999999999 67777999999999999999997

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.78  E-value=9.7e-05  Score=75.86  Aligned_cols=57  Identities=14%  Similarity=0.267  Sum_probs=36.1

Q ss_pred             ccCeeecCCccCccccccccccCCCCCeEeCCCCee------eeecCcccccCCCCCeeecCCCccc
Q 041562          549 LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHL------SGEIPVSLKRLHFLSAFNVAENNLR  609 (653)
Q Consensus       549 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l------~~~ip~~l~~l~~L~~L~ls~N~l~  609 (653)
                      +|++|++++|... ..|..+.  .+|+.|+++.|..      .+.+|+.+ .+.....+.++.+.++
T Consensus       157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~  219 (426)
T PRK15386        157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVFK  219 (426)
T ss_pred             cccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHHhh
Confidence            7999999998876 4555444  5899999988732      23556555 4444444445444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.72  E-value=9e-07  Score=88.23  Aligned_cols=37  Identities=14%  Similarity=0.140  Sum_probs=20.2

Q ss_pred             CCCCCeEEccCcccc-ccCchhhcCCCCCCEEECCCCC
Q 041562          340 CKSLTAVNLARNQLE-GQISPGIVALKSLSFLSLSNNS  376 (653)
Q Consensus       340 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~  376 (653)
                      +..|..+.|+++... +.....+..+++|+.+++-+++
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            445666666666543 2223344556666666666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.68  E-value=0.00012  Score=75.09  Aligned_cols=54  Identities=19%  Similarity=0.202  Sum_probs=34.2

Q ss_pred             ccCeeecCCcc-Cc-cccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCc
Q 041562          549 LLHMLDLSHNN-FS-GNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENN  607 (653)
Q Consensus       549 ~L~~L~Ls~N~-l~-~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~  607 (653)
                      +|+.|.+.+++ .. ..+|..+  -++|++|++++|... ..|..+.  .+|+.|+++.|.
T Consensus       133 sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        133 GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            56777775433 11 1122111  158999999999976 4565554  589999998873

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.68  E-value=2.4e-06  Score=85.29  Aligned_cols=63  Identities=24%  Similarity=0.333  Sum_probs=32.5

Q ss_pred             CCCCCCeEEccCccccccC-----chhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCC
Q 041562          339 SCKSLTAVNLARNQLEGQI-----SPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNF  402 (653)
Q Consensus       339 ~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~  402 (653)
                      +++.|+.+.++.+......     ...-..+..|+.+.++++.... ...+..+..|++|+.+++-..+
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~-d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT-DATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch-HHHHHHHhhCcccceeeeechh
Confidence            3555666666555432111     1112335566677777766542 1234556667777776665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.65  E-value=7.8e-05  Score=67.56  Aligned_cols=83  Identities=25%  Similarity=0.249  Sum_probs=37.5

Q ss_pred             CcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEcc
Q 041562          246 LRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLG  325 (653)
Q Consensus       246 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~  325 (653)
                      ...+||++|.+...  ..|..++.|.+|.|++|+|+..-|.--.-+++|+.|.+.+|.+..--....+..+|+|++|.+-
T Consensus        44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            34445555544422  2344455555555555555544443333344455555555544411111133444555555555


Q ss_pred             CCccc
Q 041562          326 SNLFT  330 (653)
Q Consensus       326 ~n~l~  330 (653)
                      +|.++
T Consensus       122 ~Npv~  126 (233)
T KOG1644|consen  122 GNPVE  126 (233)
T ss_pred             CCchh
Confidence            55443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.47  E-value=0.00021  Score=64.82  Aligned_cols=41  Identities=24%  Similarity=0.206  Sum_probs=16.9

Q ss_pred             ccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccc
Q 041562          313 FSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL  353 (653)
Q Consensus       313 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  353 (653)
                      |..++.|.+|.+.+|.|+.+-|.--.-+++|+.|.|.+|.+
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            33444444444444444433332222234444444444444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.43  E-value=5.1e-05  Score=84.54  Aligned_cols=149  Identities=17%  Similarity=0.233  Sum_probs=100.8

Q ss_pred             CCCCEEECCCCCC-CCCCCccccC--CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCC
Q 041562           98 THLSHLNLSHNRL-SGEFPSSLSS--NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSI  174 (653)
Q Consensus        98 ~~L~~L~Ls~n~~-~~~~p~~~~~--~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L  174 (653)
                      .+|++||+++... ....|..++.  |.|+.|.+++-.+...--..++.++++|..||+|+.+++..    .+.+++++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccH
Confidence            5788999988543 3334444555  88999999887775433345677889999999999888765    344578899


Q ss_pred             CEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCc--c----ccccCCCCCCEEeccCCcCcccccccc-cCCCCC
Q 041562          175 RHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSL--P----DDIYTATSLEQLSLSFNHISGSIKNGI-VNLTSL  246 (653)
Q Consensus       175 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~--p----~~l~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L  246 (653)
                      ++|.+.+=.+.. ..-..+.++++|++||+|........  .    +.-..+++|+.||.|++.+...+-+.+ ...++|
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L  277 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL  277 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence            999888776653 23346678999999999887654321  1    112357899999999988876444333 233444


Q ss_pred             cEEE
Q 041562          247 RILE  250 (653)
Q Consensus       247 ~~L~  250 (653)
                      +.+.
T Consensus       278 ~~i~  281 (699)
T KOG3665|consen  278 QQIA  281 (699)
T ss_pred             hhhh
Confidence            4443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.09  E-value=0.0015  Score=56.84  Aligned_cols=9  Identities=22%  Similarity=0.475  Sum_probs=3.0

Q ss_pred             CCCcCEEEc
Q 041562          316 LLKLRVLDL  324 (653)
Q Consensus       316 l~~L~~L~L  324 (653)
                      +++|+.+++
T Consensus        80 ~~~l~~i~~   88 (129)
T PF13306_consen   80 CTNLKNIDI   88 (129)
T ss_dssp             -TTECEEEE
T ss_pred             ccccccccc
Confidence            333333333

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.05  E-value=0.0028  Score=55.20  Aligned_cols=83  Identities=27%  Similarity=0.404  Sum_probs=28.3

Q ss_pred             ccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCc
Q 041562          216 IYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLT  295 (653)
Q Consensus       216 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  295 (653)
                      |.++++|+.+.+.. .+.......|.++++|+.+.+..+ +.......|..+++++.+.+.+ .+.......|..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            33444455544442 233233334444444555544442 3322223344444444444433 22212223344444444


Q ss_pred             EEEccC
Q 041562          296 LLNLQS  301 (653)
Q Consensus       296 ~L~L~~  301 (653)
                      .+++..
T Consensus        85 ~i~~~~   90 (129)
T PF13306_consen   85 NIDIPS   90 (129)
T ss_dssp             EEEETT
T ss_pred             ccccCc
Confidence            444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.70  E-value=0.00095  Score=63.33  Aligned_cols=61  Identities=26%  Similarity=0.321  Sum_probs=25.6

Q ss_pred             CCCCCeEEeecCcCcccCCccccCCCCCcEEEccCC--cCccccChhhccCCCCcCEEEccCCccc
Q 041562          267 LTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN--FFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       267 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      +..|+.+.+.+..++..  ..+..+++|++|.++.|  .+.+.++. ....+|+|+++++++|++.
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccc
Confidence            34444444444444421  22344445555555555  33322221 1222344444444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.52  E-value=9.2e-05  Score=70.27  Aligned_cols=101  Identities=26%  Similarity=0.298  Sum_probs=65.1

Q ss_pred             CCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEE
Q 041562          243 LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVL  322 (653)
Q Consensus       243 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L  322 (653)
                      +.+.+.|++.++.++++  .....|+.|++|.|+-|+|+..  ..+..|++|++|+|..|.|...-....+.++|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45667777777777754  3445778888888888888744  3477788888888888877632222345677777777


Q ss_pred             EccCCcccccCCcc-----CcCCCCCCeEE
Q 041562          323 DLGSNLFTGSLPIT-----LNSCKSLTAVN  347 (653)
Q Consensus       323 ~L~~n~l~~~~~~~-----l~~l~~L~~L~  347 (653)
                      .|..|.-.|..+..     +.-+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            77777665543322     23345555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=7.5e-05  Score=70.87  Aligned_cols=57  Identities=30%  Similarity=0.370  Sum_probs=29.0

Q ss_pred             CCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccc
Q 041562          293 NLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE  354 (653)
Q Consensus       293 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  354 (653)
                      +.+.|+..++.+. +|.  ....++.|++|.|+-|+|+..  ..+..|++|++|+|..|.|.
T Consensus        20 ~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             HhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc
Confidence            4445555555554 333  344555566666665555422  22445555555555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.42  E-value=0.00056  Score=74.61  Aligned_cols=40  Identities=23%  Similarity=0.072  Sum_probs=18.1

Q ss_pred             HhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccC
Q 041562          142 FRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSN  181 (653)
Q Consensus       142 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~  181 (653)
                      ...++.|+.+.+..+.-............++.|+.|++++
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            3345566666665553222111111122456666666655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.31  E-value=0.0026  Score=60.41  Aligned_cols=42  Identities=36%  Similarity=0.472  Sum_probs=22.2

Q ss_pred             ccCCCCCCeEEeecC--cCcccCCccccCCCCCcEEEccCCcCc
Q 041562          264 IGKLTNLESLVLHNN--SLSGSLPSSLKNCINLTLLNLQSNFFE  305 (653)
Q Consensus       264 l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~  305 (653)
                      +-.+++|+.|.++.|  ++.+.++.....+++|+++++++|++.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            344555555555555  444444433444566666666666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.12  E-value=0.00065  Score=74.13  Aligned_cols=189  Identities=21%  Similarity=0.151  Sum_probs=99.4

Q ss_pred             CCCCCCEEECCCCCCCCC---CCccccCCCcCEEEccCC-CCCCCCc---hHHHhcCCCCcEEEccCCcCcccCChhhhh
Q 041562           96 NLTHLSHLNLSHNRLSGE---FPSSLSSNYIKIIDLSSN-HFQGKIP---STIFRLTQNLITFNVSNNSFTGLISWSAWV  168 (653)
Q Consensus        96 ~l~~L~~L~Ls~n~~~~~---~p~~~~~~~L~~L~Ls~n-~l~~~ip---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  168 (653)
                      .++.|+.|.+..+.-...   .+.....+.|+.|+++++ ......+   ..+...+++|+.|+++++............
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            467778887776643222   222233378888888763 2211222   234556778888888887732222222223


Q ss_pred             cCCCCCCEEEccCCc-CccC-CCccCCCCCCCCEEEcccCCCCC--CccccccCCCCCCEEeccCCcCcccccccccCCC
Q 041562          169 DSFCSIRHLDLSNNR-FTGP-VPLGLGSCSRLKTFRAGFNYLTG--SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLT  244 (653)
Q Consensus       169 ~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~  244 (653)
                      ..+++|++|.+..+. ++.. +......++.|++|+++.+....  .+.....++++++.+.+....-          +.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~  335 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP  335 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence            347788888877776 4432 22233457778888888776532  1223344566666655433221          34


Q ss_pred             CCcEEEcccCcCC---cccCccccCCCCCCeEEeecCcCcccC-CccccCCCCC
Q 041562          245 SLRILELYSNSLT---GLIPRDIGKLTNLESLVLHNNSLSGSL-PSSLKNCINL  294 (653)
Q Consensus       245 ~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L  294 (653)
                      .++.+.+....-.   ......+..+++++.+.+..+...... ...+.+++.|
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            4444444433221   111223456677777777776633222 1334555555

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.05  E-value=0.0029  Score=35.85  Aligned_cols=18  Identities=56%  Similarity=0.813  Sum_probs=8.5

Q ss_pred             CCeEeCCCCeeeeecCccc
Q 041562          574 LERMDLSKNHLSGEIPVSL  592 (653)
Q Consensus       574 L~~LdLs~N~l~~~ip~~l  592 (653)
                      |++|||++|+++ .+|.+|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444555555554 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.55  E-value=0.0056  Score=34.69  Aligned_cols=22  Identities=50%  Similarity=0.711  Sum_probs=18.1

Q ss_pred             ccCeeecCCccCccccccccccC
Q 041562          549 LLHMLDLSHNNFSGNIPDQISQL  571 (653)
Q Consensus       549 ~L~~L~Ls~N~l~~~~p~~l~~l  571 (653)
                      +|++|||++|+++ .+|..|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4889999999999 788877754

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.47  E-value=2e-05  Score=84.03  Aligned_cols=62  Identities=31%  Similarity=0.384  Sum_probs=38.4

Q ss_pred             CcCEEEccCCcCccc----chhhhcCCccCCeeeCcCCcCccCCchhh-----cCCCCCCEEEccCCcCccc
Q 041562          421 NLQVLGLAECKLKGQ----VPSWIGKLKKLQVLDLSFNQLTGSVPRFL-----GNMSSLFHIDFSNNLISGE  483 (653)
Q Consensus       421 ~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~  483 (653)
                      .+..+++..+.+.+.    ++..+...+.+++++++.|......+..+     .+. .++.+.++.|.++..
T Consensus       377 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~  447 (478)
T KOG4308|consen  377 ELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITAL  447 (478)
T ss_pred             ccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhc
Confidence            355566666655543    34445667788888888887654433222     234 778888888877643

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.39  E-value=0.00097  Score=71.28  Aligned_cols=87  Identities=31%  Similarity=0.340  Sum_probs=42.4

Q ss_pred             CCCCCEEeccCCcCccc----ccccccCCCC-CcEEEcccCcCCcc----cCccccCC-CCCCeEEeecCcCcccCC---
Q 041562          219 ATSLEQLSLSFNHISGS----IKNGIVNLTS-LRILELYSNSLTGL----IPRDIGKL-TNLESLVLHNNSLSGSLP---  285 (653)
Q Consensus       219 l~~L~~L~Ls~n~i~~~----~~~~l~~l~~-L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~L~~n~l~~~~p---  285 (653)
                      ..++++|.+++|.++..    ....+...+. +..|++..|.+.+.    ....+..+ ..++.++++.|.++..-.   
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            34455555555544421    1122233333 44456665555432    11223333 455666666666654322   


Q ss_pred             -ccccCCCCCcEEEccCCcCc
Q 041562          286 -SSLKNCINLTLLNLQSNFFE  305 (653)
Q Consensus       286 -~~l~~l~~L~~L~L~~n~l~  305 (653)
                       ..+..++.++.+.++.|.+.
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhhhHHHHHhhcccCccc
Confidence             23445566777777777665

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.76  E-value=0.047  Score=28.61  Aligned_cols=9  Identities=56%  Similarity=0.748  Sum_probs=3.0

Q ss_pred             CeeecCCcc
Q 041562          551 HMLDLSHNN  559 (653)
Q Consensus       551 ~~L~Ls~N~  559 (653)
                      +.|+|++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.31  E-value=0.26  Score=29.04  Aligned_cols=14  Identities=57%  Similarity=0.819  Sum_probs=8.2

Q ss_pred             CCCCeEeCCCCeee
Q 041562          572 TNLERMDLSKNHLS  585 (653)
Q Consensus       572 ~~L~~LdLs~N~l~  585 (653)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45566666666655

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.31  E-value=0.26  Score=29.04  Aligned_cols=14  Identities=57%  Similarity=0.819  Sum_probs=8.2

Q ss_pred             CCCCeEeCCCCeee
Q 041562          572 TNLERMDLSKNHLS  585 (653)
Q Consensus       572 ~~L~~LdLs~N~l~  585 (653)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45566666666655

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.97  E-value=0.4  Score=28.22  Aligned_cols=20  Identities=30%  Similarity=0.654  Sum_probs=11.3

Q ss_pred             CcCEEEccCCCCCCCCchHHH
Q 041562          122 YIKIIDLSSNHFQGKIPSTIF  142 (653)
Q Consensus       122 ~L~~L~Ls~n~l~~~ip~~~~  142 (653)
                      +|++|+|++|+++ .+|..+|
T Consensus         3 ~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        3 NLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCC-cCCHHHc
Confidence            4555555555555 6666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.97  E-value=0.4  Score=28.22  Aligned_cols=20  Identities=30%  Similarity=0.654  Sum_probs=11.3

Q ss_pred             CcCEEEccCCCCCCCCchHHH
Q 041562          122 YIKIIDLSSNHFQGKIPSTIF  142 (653)
Q Consensus       122 ~L~~L~Ls~n~l~~~ip~~~~  142 (653)
                      +|++|+|++|+++ .+|..+|
T Consensus         3 ~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        3 NLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCC-cCCHHHc
Confidence            4555555555555 6666554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.93  E-value=0.11  Score=30.03  Aligned_cols=13  Identities=54%  Similarity=0.897  Sum_probs=5.0

Q ss_pred             CCCeEeCCCCeee
Q 041562          573 NLERMDLSKNHLS  585 (653)
Q Consensus       573 ~L~~LdLs~N~l~  585 (653)
                      +|++|||++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444444

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.50  E-value=0.03  Score=52.28  Aligned_cols=62  Identities=24%  Similarity=0.251  Sum_probs=27.7

Q ss_pred             cCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcC
Q 041562          241 VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFF  304 (653)
Q Consensus       241 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  304 (653)
                      .-++.|..|+++.|.+. ..|..++.+..++.+++..|..+ ..|.+++..+.++++++-.|.+
T Consensus        62 s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   62 SILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             HHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence            33334444444444443 33444444444444444444443 3444444444444444444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.40  E-value=0.034  Score=51.93  Aligned_cols=85  Identities=20%  Similarity=0.194  Sum_probs=41.3

Q ss_pred             cCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcC
Q 041562          241 VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLR  320 (653)
Q Consensus       241 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~  320 (653)
                      ......+.||++.|++... -..|+-++.|..|+++.|.+. ..|..++....++.+++..|..+ ..|. ++...+.++
T Consensus        39 ~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~~~k  114 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKEPHPK  114 (326)
T ss_pred             hccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cccccCCcc
Confidence            3344444555555544322 123444445555555555554 44555555555555555555444 3342 455555555


Q ss_pred             EEEccCCcc
Q 041562          321 VLDLGSNLF  329 (653)
Q Consensus       321 ~L~L~~n~l  329 (653)
                      ++++-.|.+
T Consensus       115 ~~e~k~~~~  123 (326)
T KOG0473|consen  115 KNEQKKTEF  123 (326)
T ss_pred             hhhhccCcc
Confidence            555555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.13  E-value=0.19  Score=46.22  Aligned_cols=35  Identities=14%  Similarity=0.128  Sum_probs=19.7

Q ss_pred             CCCeEEeecCcCcccCCccccCCCCCcEEEccCCc
Q 041562          269 NLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNF  303 (653)
Q Consensus       269 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  303 (653)
                      .++.+|-++..|...--+.+.+++.++.|.+.++.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            45556666666555444455555555555555553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	653
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-36
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-36
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		8e-06

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 158/575 (27%), Positives = 241/575 (41%), Gaps = 111/575 (19%)
Query: 112 GEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDS 170
           G+F  ++S+   +K++++SSN F G IP    +  Q L   +++ N FTG I    ++  
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL---SLAENKFTGEIP--DFLSG 291
Query: 171 FC-SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP-DDIYTATSLEQLSLS 228
            C ++  LDLS N F G VP   GSCS L++     N  +G LP D +     L+ L LS
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 229 FNHISGSIKNGIVNLT-SLRILELYSNSLTGLIPRDIGK--LTNLESLVLHNNXXXXXXX 285
           FN  SG +   + NL+ SL  L+L SN+ +G I  ++ +     L+ L L NN       
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 286 XXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTA 345
               NC  L  L+L  N+                          +G++P +L S   L  
Sbjct: 412 PTLSNCSELVSLHLSFNYL-------------------------SGTIPSSLGSLSKLRD 446
Query: 346 VNLARNQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAIRILMGCKNLKVLIIPLNFMDE 405
           + L  N LEG+I                           + LM  K L+ LI+  N +  
Sbjct: 447 LKLWLNMLEGEIP--------------------------QELMYVKTLETLILDFNDLTG 480
Query: 406 TMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLG 465
            +P     +  +   NL  + L+  +L G++P WIG+L+ L +L LS N  +G++P  LG
Sbjct: 481 EIP-----SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 466 NMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFK----GSNNFIG 521
           +  SL  +D + NL +G  P    +                Y++    K    G+ N + 
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL- 594
Query: 522 EYKKILTFHEQYTWKTTX-------------XXXXXXXXXXXXXXXXXHNNFSGNIPDQI 568
           E++ I +  EQ    +T                               +N  SG IP +I
Sbjct: 595 EFQGIRS--EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 569 ------------------------SQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVA 604
                                     L  L  +DLS N L G IP ++  L  L+  +++
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 605 ENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQR 639
            NNL G IP  GQF+TFP + F  NP LCG  + R
Sbjct: 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  149 bits (376), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 158/575 (27%), Positives = 241/575 (41%), Gaps = 111/575 (19%)
Query: 112 GEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDS 170
           G+F  ++S+   +K++++SSN F G IP    +  Q L   +++ N FTG I    ++  
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL---SLAENKFTGEIP--DFLSG 288
Query: 171 FC-SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP-DDIYTATSLEQLSLS 228
            C ++  LDLS N F G VP   GSCS L++     N  +G LP D +     L+ L LS
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 348
Query: 229 FNHISGSIKNGIVNLT-SLRILELYSNSLTGLIPRDIGK--LTNLESLVLHNNXXXXXXX 285
           FN  SG +   + NL+ SL  L+L SN+ +G I  ++ +     L+ L L NN       
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 286 XXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTA 345
               NC  L  L+L  N+                          +G++P +L S   L  
Sbjct: 409 PTLSNCSELVSLHLSFNYL-------------------------SGTIPSSLGSLSKLRD 443
Query: 346 VNLARNQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAIRILMGCKNLKVLIIPLNFMDE 405
           + L  N LEG+I                           + LM  K L+ LI+  N +  
Sbjct: 444 LKLWLNMLEGEIP--------------------------QELMYVKTLETLILDFNDLTG 477
Query: 406 TMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLG 465
            +P     +  +   NL  + L+  +L G++P WIG+L+ L +L LS N  +G++P  LG
Sbjct: 478 EIP-----SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 466 NMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFK----GSNNFIG 521
           +  SL  +D + NL +G  P    +                Y++    K    G+ N + 
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL- 591
Query: 522 EYKKILTFHEQYTWKTTX-------------XXXXXXXXXXXXXXXXXHNNFSGNIPDQI 568
           E++ I +  EQ    +T                               +N  SG IP +I
Sbjct: 592 EFQGIRS--EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 569 ------------------------SQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVA 604
                                     L  L  +DLS N L G IP ++  L  L+  +++
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 605 ENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQR 639
            NNL G IP  GQF+TFP + F  NP LCG  + R
Sbjct: 710 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 25/222 (11%)
Query: 422 LQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481
           L  L +    + G +P ++ ++K L  LD S+N L+G++P  + ++ +L  I F  N IS
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 482 GEFPKEFCRLPALTPEQD--------KNKANESYLEFSLFKGSNNFIGEYKKILTFHEQY 533
           G  P  +     L             K     + L  +    S N +     +L   ++ 
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 534 TWKTTXXXXXXXXXXXXXXXXXXHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLK 593
           T K                     N+ + ++  ++    NL  +DL  N + G +P  L 
Sbjct: 223 TQKI----------------HLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 594 RLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGA 635
           +L FL + NV+ NNL G IP GG    F  S++  N  LCG+
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 48/121 (39%), Gaps = 26/121 (21%)
Query: 503 ANESYLEFSLFKGSNNFIG----EYKKILTFHEQYTWKTTXXXXXXXXXXXXXXXXXXHN 558
           AN  YL F    G NN +G       K+   H  Y                       H 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI---------------------THT 111
Query: 559 NFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP-SGGQ 617
           N SG IPD +SQ+  L  +D S N LSG +P S+  L  L       N + G+IP S G 
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 618 F 618
           F
Sbjct: 172 F 172

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 8/194 (4%)
Query: 114 FPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCS 173
            PS++ ++  K +DL SN     +PS  F     L    +++N    L +         +
Sbjct: 31  IPSNIPAD-TKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPA--GIFKELKN 86
Query: 174 IRHLDLSNNRFTGPVPLGL-GSCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNH 231
           +  L +++N+    +P+G+      L   R   N L  SLP  ++ + T L  LSL +N 
Sbjct: 87  LETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE 144
Query: 232 ISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNC 291
           +    K     LTSL+ L LY+N L  +      KLT L++L L NN           + 
Sbjct: 145 LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204
Query: 292 INLTLLNLQSNFFE 305
             L +L LQ N ++
Sbjct: 205 EKLKMLQLQENPWD 218

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	653
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-115
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-73
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-70
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-76
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-74
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-62
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-05

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  360 bits (926), Expect = e-115
 Identities = 166/595 (27%), Positives = 259/595 (43%), Gaps = 76/595 (12%)

Query: 77  SHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNY-IKIIDLSSNHFQG 135
             L +     +  I   +G+ + L HL++S N+LSG+F  ++S+   +K++++SSN F G
Sbjct: 203 EFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 136 KIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSC 195
            IP       ++L   +++ N FTG I       +  ++  LDLS N F G VP   GSC
Sbjct: 262 PIPPLPL---KSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317

Query: 196 SRLKTFRAGFNYLTGSLPDD-IYTATSLEQLSLSFNHISGSIKNGIVNLT-SLRILELYS 253
           S L++     N  +G LP D +     L+ L LSFN  SG +   + NL+ SL  L+L S
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377

Query: 254 NSLTGLIPRDIGK--LTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVF 311
           N+ +G I  ++ +     L+ L L NN  +G +P +L NC  L  L+L  N+  G I   
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS- 436

Query: 312 NFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLS 371
           +  +L KLR L L  N+  G +P  L   K+L  + L  N L G+I  G+    +L+++S
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496

Query: 372 LSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECK 431
           LSNN    +TG I   +G                              +NL +L L+   
Sbjct: 497 LSNN---RLTGEIPKWIG----------------------------RLENLAILKLSNNS 525

Query: 432 LKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRL 491
             G +P+ +G  + L  LDL+ N   G++P  +   S       + N I+G+        
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKND 581

Query: 492 PALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLH 551
                       N    +    +  N         +T      +    S        +  
Sbjct: 582 GMKKECHGAG--NLLEFQGIRSEQLNRLSTRNPCNITSR---VYGGHTSPTFDNNGSM-M 635

Query: 552 MLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGS 611
            LD+S+N  SG IP +I  +  L  ++L  N +SG IP  +  L  L+  +++ N L G 
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695

Query: 612 I------------------------PSGGQFDTFPSSSFRGNPDLCGAIVQRSCS 642
           I                        P  GQF+TFP + F  NP LCG  + R   
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  309 bits (795), Expect = 1e-95
 Identities = 147/596 (24%), Positives = 217/596 (36%), Gaps = 145/596 (24%)

Query: 27  FSSFCQACNQIDQDSLLSLGFNISSPGL--NWSSSTDCCLWEGIKCDANGRVSHLWLPWK 84
           F +        +   L+S    +    L  +WSS+ + C ++G+ C  + +V+ + L  K
Sbjct: 2   FQASPSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSK 60

Query: 85  GLT---GTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPS-- 139
            L      +S S+ +LT L  L LS++ ++G       S  +  +DLS N   G + +  
Sbjct: 61  PLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLT 120

Query: 140 TIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLK 199
           ++   +  L   NVS+N+       S       S+  LDLS N  +G   +G        
Sbjct: 121 SLGSCS-GLKFLNVSSNTLDFPGKVS-GGLKLNSLEVLDLSANSISGANVVGWVLSDGC- 177

Query: 200 TFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGL 259
                                 L+ L++S N ISG +   +    +L  L++ SN+ +  
Sbjct: 178 --------------------GELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 215

Query: 260 IPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKL 319
           IP  +G  + L+ L +  N LSG    ++  C  L LLN+ SN F G I           
Sbjct: 216 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP------- 267

Query: 320 RVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTN 379
                                KSL  ++LA N+  G+I              LS      
Sbjct: 268 --------------------LKSLQYLSLAENKFTGEIPD-----------FLSGA---- 292

Query: 380 ITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSW 439
                                                     L  L L+     G VP +
Sbjct: 293 ---------------------------------------CDTLTGLDLSGNHFYGAVPPF 313

Query: 440 IGKLKKLQVLDLSFNQLTGSVPR-FLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQ 498
            G    L+ L LS N  +G +P   L  M  L  +D S N  SGE P+    L A     
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA----- 368

Query: 499 DKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHN 558
                +   L+ S    SNNF G    IL    Q    T            L  L L +N
Sbjct: 369 -----SLLTLDLS----SNNFSGP---ILPNLCQNPKNT------------LQELYLQNN 404

Query: 559 NFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPS 614
            F+G IP  +S  + L  + LS N+LSG IP SL  L  L    +  N L G IP 
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.7 bits (231), Expect = 1e-19
 Identities = 49/192 (25%), Positives = 67/192 (34%), Gaps = 43/192 (22%)

Query: 434 GQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFP--KEFCRL 491
             V S +  L  L+ L LS + + GSV  F    +SL  +D S N +SG           
Sbjct: 67  SAVSSSLLSLTGLESLFLSNSHINGSVSGF-KCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 492 PALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLL-- 549
             L            +L  S    SN                         VS    L  
Sbjct: 126 SGLK-----------FLNVS----SNTLDF------------------PGKVSGGLKLNS 152

Query: 550 LHMLDLSHNNFSGNIPDQI---SQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAEN 606
           L +LDLS N+ SG              L+ + +S N +SG++ VS  R   L   +V+ N
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSN 210

Query: 607 NLRGSIPSGGQF 618
           N    IP  G  
Sbjct: 211 NFSTGIPFLGDC 222

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  256 bits (657), Expect = 2e-76
 Identities = 116/549 (21%), Positives = 197/549 (35%), Gaps = 51/549 (9%)

Query: 86  LTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRL 144
           L+     +    T+L+ L+L  N +     +       +  +DLS N        T  +L
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 145 TQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAG 204
             NL    +SNN    L S    + +  S++ L+LS+N+     P    +  RL      
Sbjct: 145 E-NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 205 FNYLTGSLPDDIYTA---TSLEQLSLSFNHISGSIKNGIVNL--TSLRILELYSNSLTGL 259
              L  SL + +      TS+  LSLS + +S +     + L  T+L +L+L  N+L  +
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 260 IPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGD--------ISVF 311
                  L  LE   L  N++      SL    N+  LNL+ +F +          I  F
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 312 NFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIV----ALKSL 367
           +F  L  L  L++  N   G          +L  ++L+ +    +          A   L
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 368 SFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGL 427
             L+L+ N ++ I           +L+VL + LN + + +          G +N+  + L
Sbjct: 384 HILNLTKNKISKIES--DAFSWLGHLEVLDLGLNEIGQELTGQ----EWRGLENIFEIYL 437

Query: 428 AECKLKGQVPSWIGKLKKLQVLDLSFNQLTG--SVPRFLGNMSSLFHIDFSNNLISGEFP 485
           +  K      +    +  LQ L L    L    S P     + +L  +D SNN I+    
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497

Query: 486 KEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSL 545
                L  L             L+       NN        L    ++         +  
Sbjct: 498 DMLEGLEKLE-----------ILDLQ----HNN--------LARLWKHANPGGPIYFLKG 534

Query: 546 LRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAE 605
           L  L H+L+L  N F     +    L  L+ +DL  N+L+            L + N+ +
Sbjct: 535 LSHL-HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593

Query: 606 NNLRGSIPS 614
           N +      
Sbjct: 594 NLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  247 bits (633), Expect = 6e-73
 Identities = 114/568 (20%), Positives = 199/568 (35%), Gaps = 69/568 (12%)

Query: 76  VSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQ 134
           ++ L L    L    + +    + L+ L++  N +S   P        +K+++L  N   
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 135 GKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFC---SIRHLDLSNNRFTGPVPLG 191
             +    F    NL   ++ +NS   + +     + F    ++  LDLS+N  +      
Sbjct: 87  Q-LSDKTFAFCTNLTELHLMSNSIQKIKN-----NPFVKQKNLITLDLSHNGLSSTKLGT 140

Query: 192 LGSCSRLKTFRAGFNYLTGSLPDDIYTA--TSLEQLSLSFNHISGSIKNGIVNLTSLRIL 249
                 L+      N +     +++     +SL++L LS N I          +  L  L
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 250 ELYSNSLTGLIPRDIG---KLTNLESLVLHNNSLSGSLPSSLKNC--INLTLLNLQSNFF 304
            L +  L   +   +      T++ +L L N+ LS +  ++       NLT+L+L  N  
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 305 EGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG---- 360
              +   +F+ L +L    L  N        +L+   ++  +NL R+  +  IS      
Sbjct: 261 NV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 361 -----IVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTS 415
                   LK L  L++ +N +  I     +  G  NLK L +  +F       N+   S
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKS--NMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377

Query: 416 ANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVP-RFLGNMSSLFHID 474
                 L +L L + K+          L  L+VLDL  N++   +  +    + ++F I 
Sbjct: 378 -LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436

Query: 475 FSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYT 534
            S N         F  +P+L             L                    F     
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQ-----------RLMLR----RVALKNVDSSPSPFQPLRN 481

Query: 535 WKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLS--------G 586
                          L +LDLS+NN +    D +  L  LE +DL  N+L+        G
Sbjct: 482 ---------------LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526

Query: 587 EIPVSLKRLHFLSAFNVAENNLRGSIPS 614
                LK L  L   N+  N        
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  239 bits (612), Expect = 6e-70
 Identities = 107/582 (18%), Positives = 199/582 (34%), Gaps = 78/582 (13%)

Query: 78  HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSG---EFPSSLSSNYIKIIDLSSNHFQ 134
            L L   GL+ T   +   L +L  L LS+N++     E     +++ +K ++LSSN  +
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 135 GKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFC-SIRHLDLSNNRFTGPVPLGLG 193
              P     +   L    ++N      ++    ++    SIR+L LSN++ +        
Sbjct: 185 EFSPGCFHAIG-RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 194 SC--SRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILEL 251
               + L      +N L     D       LE   L +N+I     + +  L ++R L L
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 252 YSN---------SLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN 302
             +         SL  +       L  LE L + +N + G   +     INL  L+L ++
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 303 FFEG---DISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISP 359
           F          F       L +L+L  N  +       +    L  ++L  N++  +++ 
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 360 G-IVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANG 418
                L+++  + LS N    +                    +F                
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQL-----------------TRNSF--------------AL 452

Query: 419 FKNLQVLGLAECKLKG--QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFS 476
             +LQ L L    LK     PS    L+ L +LDLS N +       L  +  L  +D  
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512

Query: 477 NNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWK 536
           +N ++  +       P       K  ++   L       SN F     ++     +    
Sbjct: 513 HNNLARLWKHANPGGP---IYFLKGLSHLHILNLE----SNGFDEIPVEVFKDLFE---- 561

Query: 537 TTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKR-L 595
                        L ++DL  NN +       +   +L+ ++L KN ++           
Sbjct: 562 -------------LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 596 HFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIV 637
             L+  ++  N    +  S   F  + + +    P+L    +
Sbjct: 609 RNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYL 650

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  223 bits (570), Expect = 5e-64
 Identities = 107/493 (21%), Positives = 176/493 (35%), Gaps = 54/493 (10%)

Query: 145 TQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAG 204
           T +    + S+   T +       D   +I  L+L++N+            S+L +   G
Sbjct: 3   TVSHEVADCSHLKLTQVPD-----DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 205 FNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDI 264
           FN ++   P+       L+ L+L  N +S          T+L  L L SNS+  +     
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117

Query: 265 GKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEG-DISVFNFSTLLKLRVLD 323
            K  NL +L L +N LS +   +     NL  L L +N  +       +      L+ L+
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177

Query: 324 LGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI---VALKSLSFLSLSNNSLTNI 380
           L SN      P   ++   L  + L   QL   ++  +   +A  S+  LSLSN+ L+  
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237

Query: 381 TGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWI 440
           +    + +   NL +L +  N ++    D     S      L+   L    ++      +
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGND-----SFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 441 GKLKKLQVLDL---------SFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRL 491
             L  ++ L+L         S   L          +  L H++  +N I G     F  L
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352

Query: 492 PALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLH 551
             L                SL   SN+F                  T    VSL    LH
Sbjct: 353 INLK-------------YLSL---SNSFTS------------LRTLTNETFVSLAHSPLH 384

Query: 552 MLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVS-LKRLHFLSAFNVAENNLRG 610
           +L+L+ N  S    D  S L +LE +DL  N +  E+     + L  +    ++ N    
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 611 SIPSGGQFDTFPS 623
                  F   PS
Sbjct: 445 LTR--NSFALVPS 455

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  219 bits (561), Expect = 8e-63
 Identities = 100/563 (17%), Positives = 182/563 (32%), Gaps = 90/563 (15%)

Query: 69  KCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIID 127
           KC  +  V         LT    +     T+++ LNL+HN+L     ++ +  + +  +D
Sbjct: 1   KCTVSHEV--ADCSHLKLT---QVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 128 LSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGP 187
           +  N      P    +L                             ++ L+L +N  +  
Sbjct: 56  VGFNTISKLEPELCQKLPM---------------------------LKVLNLQHNELSQL 88

Query: 188 VPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLR 247
                  C+ L       N +     +      +L  L LS N +S +     V L +L+
Sbjct: 89  SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148

Query: 248 ILELYSNSLTGLIPRDIG--KLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFE 305
            L L +N +  L   ++     ++L+ L L +N +    P        L  L L +    
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 306 GDI--SVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCK--SLTAVNLARNQLEGQISPGI 361
             +   +        +R L L ++  + +   T    K  +LT ++L+ N L    +   
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 362 VALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKN 421
             L  L +  L  N++ ++      L G  N++ L +                     ++
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFS--HSLHGLFNVRYLNLK--------------------RS 306

Query: 422 LQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481
                ++   L          LK L+ L++  N + G        + +L ++  SN+  S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 482 GEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASA 541
                    L  LT E   + A+      +L   + N I                   S 
Sbjct: 367 ---------LRTLTNETFVSLAHSPLHILNL---TKNKI---------------SKIESD 399

Query: 542 AVSLLRLLLHMLDLSHNNFSGNIPDQ-ISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSA 600
           A S L  L   LDL  N     +  Q    L N+  + LS N        S   +  L  
Sbjct: 400 AFSWLGHLEV-LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

Query: 601 FNVAENNLRGSIPSGGQFDTFPS 623
             +    L+    S   F    +
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  172 bits (437), Expect = 8e-46
 Identities = 82/434 (18%), Positives = 153/434 (35%), Gaps = 38/434 (8%)

Query: 86  LTGTISLSIGNL--THLSHLNLSHNRLSGEFPSSLSSNY-IKIIDLSSNHFQGKIPSTIF 142
           L+ T + +   L  T+L+ L+LS+N L+     S +    ++   L  N+ Q     ++ 
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 143 RLTQ--------NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGS 194
            L          +    ++S  S   +  +S        + HL++ +N   G        
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ--WLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 195 CSRLKTFRAGFNYLT-GSLPDDIY---TATSLEQLSLSFNHISGSIKNGIVNLTSLRILE 250
              LK      ++ +  +L ++ +     + L  L+L+ N IS    +    L  L +L+
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 251 LYSNSLTGLIPRD-IGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEG-DI 308
           L  N +   +       L N+  + L  N       +S     +L  L L+    +  D 
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

Query: 309 SVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE--------GQISPG 360
           S   F  L  L +LDL +N         L   + L  ++L  N L         G     
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531

Query: 361 IVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFK 420
           +  L  L  L+L +N    I     +      LK++ + LN ++            N   
Sbjct: 532 LKGLSHLHILNLESNGFDEIPV--EVFKDLFELKIIDLGLNNLNTLPAS-----VFNNQV 584

Query: 421 NLQVLGLAECKLKGQVPSWIGK-LKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNL 479
           +L+ L L +  +        G   + L  LD+ FN    +       ++ +   + ++  
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI---NETHTN 641

Query: 480 ISGEFPKEFCRLPA 493
           I        C  P 
Sbjct: 642 IPELSSHYLCNTPP 655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  254 bits (651), Expect = 5e-76
 Identities = 98/602 (16%), Positives = 190/602 (31%), Gaps = 73/602 (12%)

Query: 44  SLGFNISSPGLNWSSSTDCCLW---EGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHL 100
           S     + PG NW+ + +  +W    G+  ++NGRV+ L L   G +G +  +IG LT L
Sbjct: 48  SQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTEL 107

Query: 101 SHLNLSHNRLSG----EFPSSLSSNYI-KIIDLSSNHFQGKIPSTIFRLT-QNLITFNVS 154
             L L  +          P  +S+N   +       H+Q        R    +LI   ++
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167

Query: 155 NNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPD 214
           ++     I              +   +N  T  V   +   ++L+ F  G +        
Sbjct: 168 SDPQQKSI--KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI- 223

Query: 215 DIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLV 274
                 + E  +  +     +      NL  L  +E+Y+      +P  +  L  ++ + 
Sbjct: 224 ----CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

Query: 275 LHNNSL--------SGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGS 326
           +  N               +       + ++ +  N  +      +   + KL +L+   
Sbjct: 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339

Query: 327 NLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA-LKSLSFLSLSNNSLTNITGAIR 385
           N   G LP    S   L ++NLA NQ+   I        + +  LS ++N L  I     
Sbjct: 340 NQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFD 397

Query: 386 ILMGCKNLKVLIIPLNFMDETMPDNDRLTSAN--GFKNLQVLGLAECKLKGQVPSWIGKL 443
                  +  +    N +      N            N+  + L+  ++           
Sbjct: 398 AK-SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 444 KKLQVLDLSFNQLTG-------SVPRFLGNMSSLFHIDFSNNLISGEFPKE--FCRLPAL 494
             L  ++L  N LT               N   L  ID   N ++     +     LP L
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYL 515

Query: 495 TPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRL-LLHML 553
                        ++ S     N+F     + L                +L    + +  
Sbjct: 516 V-----------GIDLS----YNSFSKFPTQPLNSS-------------TLKGFGIRNQR 547

Query: 554 DLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP 613
           D   N      P+ I+   +L ++ +  N +   +   +     +S  ++ +N       
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDL 604

Query: 614 SG 615
           S 
Sbjct: 605 SY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  211 bits (538), Expect = 7e-60
 Identities = 74/535 (13%), Positives = 155/535 (28%), Gaps = 94/535 (17%)

Query: 75  RVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHF 133
            +    +       +I  S       + +    N ++     ++     ++   + ++ F
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF 218

Query: 134 QGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLG 193
             +     +         N                D+   +  +++ N      +P  L 
Sbjct: 219 VAENICEAWENE------NSEYAQQYKTEDLK--WDNLKDLTDVEVYNCPNLTKLPTFLK 270

Query: 194 SCSRLKTFRAGFNYLT--------GSLPDDIYTATSLEQLSLSFNHI-SGSIKNGIVNLT 244
           +   ++      N                D      ++ + + +N++ +  ++  +  + 
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK 330

Query: 245 SLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFF 304
            L +LE   N L G +P   G    L SL L  N ++    +       +  L+   N  
Sbjct: 331 KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389

Query: 305 EGDISVFNFSTLLKLRVLDLGSNLFTG-------SLPITLNSCKSLTAVNLARNQLEGQI 357
           +   ++F+  ++  +  +D   N            L  T     +++++NL+ NQ+    
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 358 SPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSAN 417
                    LS ++L  N LT I                  P N + +   +        
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEI------------------PKNSLKDENENFKNTY--- 488

Query: 418 GFKNLQVLGLAECKLKGQVPSW-IGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFS 476
               L  + L   KL      +    L  L  +DLS+N  +   P    N S+L      
Sbjct: 489 ---LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544

Query: 477 NNL------ISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFH 530
           N           E+P+     P+LT            L+      SN+     +KI    
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLT-----------QLQIG----SNDIRKVNEKITP-- 587

Query: 531 EQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLS 585
                              + +LD+  N         +          L  +   
Sbjct: 588 ------------------NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  167 bits (426), Expect = 1e-44
 Identities = 51/317 (16%), Positives = 102/317 (32%), Gaps = 28/317 (8%)

Query: 87  TGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQ 146
           T  +  S+  +  L  L   +N+L G+ P+  S   +  ++L+ N     IP+     T+
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPANFCGFTE 377

Query: 147 NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-------PVPLGLGSCSRLK 199
            +   + ++N    + +      S   +  +D S N           P+         + 
Sbjct: 378 QVENLSFAHNKLKYIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 200 TFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISG-------SIKNGIVNLTSLRILELY 252
           +     N ++    +   T + L  ++L  N ++               N   L  ++L 
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 253 SNSLTGLIP-RDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQ------SNFFE 305
            N LT L        L  L  + L  NS S   P+   N   L    ++       N   
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

Query: 306 GDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALK 365
            +      +    L  L +GSN       +      +++ +++  N         +    
Sbjct: 556 REWPE-GITLCPSLTQLQIGSNDIRK---VNEKITPNISVLDIKDNPNISIDLSYVCPYI 611

Query: 366 SLSFLSLSNNSLTNITG 382
                 L  +   +I G
Sbjct: 612 EAGMYMLFYDKTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  158 bits (401), Expect = 3e-41
 Identities = 58/404 (14%), Positives = 122/404 (30%), Gaps = 69/404 (17%)

Query: 242 NLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSG----SLPSSLKNCINLTLL 297
           +   +  L L     +G +P  IG+LT LE L L ++          P  +   ++    
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 298 NLQSNFFEGDI-SVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQ 356
                 ++              L    + S+    S+  +       T +    N +   
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF- 197

Query: 357 ISPGIVALKSLSFLSLSNNSLT--NITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLT 414
           +S  ++ L  L    + N+     NI  A          +     L +            
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW------------ 245

Query: 415 SANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLT--------GSVPRFLGN 466
             +  K+L  + +  C    ++P+++  L ++Q+++++ N+                   
Sbjct: 246 --DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303

Query: 467 MSSLFHIDFS-NNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKK 525
              +  I    NNL +        ++  L             LE       N   G+   
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLG-----------MLECL----YNQLEGKLPA 348

Query: 526 ILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLS 585
             +  +                  L  L+L++N  +    +       +E +  + N L 
Sbjct: 349 FGSEIK------------------LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390

Query: 586 GEIP--VSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFR 627
             IP     K +  +SA + + N +         FD    + F+
Sbjct: 391 -YIPNIFDAKSVSVMSAIDFSYNEIGSVDG--KNFDPLDPTPFK 431

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.3 bits (222), Expect = 9e-19
 Identities = 34/305 (11%), Positives = 78/305 (25%), Gaps = 67/305 (21%)

Query: 327 NLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRI 386
           +++     ++LNS   +T ++L      G++   I  L  L  L+L ++    +   +  
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK-VNERLFG 125

Query: 387 LMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLK-- 444
             G                               + +         +     +  +    
Sbjct: 126 PKGISANM--------------------------SDEQKQKMRMHYQKTFVDYDPREDFS 159

Query: 445 KLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKAN 504
            L    ++ +    S+ +          I   +N I+    K   RL  L          
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLR--------- 209

Query: 505 ESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNI 564
                   + G++ F+ E                       +       +  +       
Sbjct: 210 ------QFYMGNSPFVAE----------------------NICEAWENENSEYAQQYKTE 241

Query: 565 PDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSS 624
             +   L +L  +++       ++P  LK L  +   NVA N           +     +
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 625 SFRGN 629
                
Sbjct: 302 PVGEK 306

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  254 bits (650), Expect = 5e-74
 Identities = 101/629 (16%), Positives = 190/629 (30%), Gaps = 82/629 (13%)

Query: 41  SLLSLGFNISSPGLNWSSSTDCCLW---EGIKCDANGRVSHLWLPWKGLTGTISLSIGNL 97
              S   N +   LNW+ + +  +W    G+  D NGRV+ L L   G  G +  +IG L
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQL 346

Query: 98  THLSHLNLSHNRLSG-EFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNN 156
           T L  L+   +  +              + +   +  +           Q L   ++  +
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406

Query: 157 SFTGLIS-WSAWVDSFCSIRHLDL--SNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP 213
           +            DS  S++   +    NR T  +   +   ++L+      +  T    
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI 465

Query: 214 DDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESL 273
                A   E  +  +     + +    NL  L  +ELY+      +P  +  L  L+SL
Sbjct: 466 -----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 274 VLHNNSLSG---------SLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDL 324
            +  N              L         + +  +  N  E   +  +   ++KL +LD 
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580

Query: 325 GSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA-LKSLSFLSLSNNSLTNITGA 383
             N     L     +   LT + L  NQ+E +I     A    +  L  S+N L  I   
Sbjct: 581 VHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637

Query: 384 IRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKL 443
                    +  +    N +     +           N   + L+  +++          
Sbjct: 638 FNA-KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

Query: 444 KKLQVLDLSFNQLT-------GSVPRFLGNMSSLFHIDFSNNLISGEFPKE--FCRLPAL 494
             +  + LS N +T               N   L  ID   N ++     +     LP L
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755

Query: 495 TPEQDKNKANESYLEFSLFKGSNNF------IGEYKKILTFHEQYTWKTTASAAVSLLRL 548
           +            ++ S     N F           ++  F                   
Sbjct: 756 S-----------NMDVS----YNCFSSFPTQPLNSSQLKAFG------------------ 782

Query: 549 LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNL 608
           + H  D   N      P  I+   +L ++ +  N +  ++   L     L   ++A+N  
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPN 839

Query: 609 -RGSIPSGGQFDTFPSSSFRGN--PDLCG 634
               + S   +          +   D+ G
Sbjct: 840 ISIDVTSVCPYIEAGMYVLLYDKTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  150 bits (381), Expect = 3e-38
 Identities = 66/433 (15%), Positives = 131/433 (30%), Gaps = 71/433 (16%)

Query: 204 GFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRD 263
           G N+   S   +    +     +   +         + N   +  L L      G +P  
Sbjct: 283 GKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA 342

Query: 264 IGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLD 323
           IG+LT L+ L    +S + S        +   +   + +               +L + D
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 324 LGSNLFTGSLPITLNSCKSLTAVNLARNQLEG------QISPGIVALKSLSFLSLSNNSL 377
           L  +    +  +     K  + ++L   Q+         IS  I  L  L  +  +N+  
Sbjct: 403 LLQDAINRNPEMK--PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460

Query: 378 TNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVP 437
           T    A+       + +          E         S +  K+L  + L  C    Q+P
Sbjct: 461 TYDNIAV-------DWEDANSDYAKQYENEEL-----SWSNLKDLTDVELYNCPNMTQLP 508

Query: 438 SWIGKLKKLQVLDLSFNQLTG---------SVPRFLGNMSSLFHIDFSNNLISGEFPKE- 487
            ++  L +LQ L+++ N+             +         +       N +  EFP   
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567

Query: 488 -FCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLL 546
              ++  L             L+       +N +    + L              A    
Sbjct: 568 SLQKMVKLG-----------LLDCV-----HNKV----RHLE-------------AFGTN 594

Query: 547 RLLLHMLDLSHNNFSGNIPDQI-SQLTNLERMDLSKNHLSGEIP--VSLKRLHFLSAFNV 603
             L   L L +N     IP+   +    +E +  S N L   IP   + K ++ + + + 
Sbjct: 595 VKLTD-LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF 651

Query: 604 AENNLRGSIPSGG 616
           + N +     +  
Sbjct: 652 SYNKIGSEGRNIS 664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  226 bits (578), Expect = 6e-69
 Identities = 90/355 (25%), Positives = 144/355 (40%), Gaps = 63/355 (17%)

Query: 32  QACNQIDQDSLLSLGFNISSPGL--NWSSSTDCC--LWEGIKCDANG---RVSHLWLPWK 84
           + CN  D+ +LL +  ++ +P    +W  +TDCC   W G+ CD +    RV++L L   
Sbjct: 1   ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 85  GLTGT--ISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIF 142
            L     I  S+ NL +L+ L +                         N+  G IP  I 
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGI----------------------NNLVGPIPPAIA 98

Query: 143 RLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFR 202
           +LTQ                           + +L +++   +G +P  L     L T  
Sbjct: 99  KLTQ---------------------------LHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 203 AGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSL-RILELYSNSLTGLIP 261
             +N L+G+LP  I +  +L  ++   N ISG+I +   + + L   + +  N LTG IP
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 262 RDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRV 321
                L NL  + L  N L G       +  N   ++L  N    D+          L  
Sbjct: 192 PTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNG 248

Query: 322 LDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNS 376
           LDL +N   G+LP  L   K L ++N++ N L G+I P    L+     + +NN 
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  192 bits (490), Expect = 3e-56
 Identities = 79/335 (23%), Positives = 132/335 (39%), Gaps = 69/335 (20%)

Query: 150 TFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTG--PVPLGLGSCSRLKTFR-AGFN 206
           T +  N ++ G++  +        + +LDLS        P+P  L +   L      G N
Sbjct: 30  TTDCCNRTWLGVLCDT--DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87

Query: 207 YLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGK 266
            L G +P  I   T L  L ++  ++SG+I + +  + +L  L+   N+L+G +P  I  
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 267 LTNLESLVLHNNSLSGSLPSSLKNCINL-TLLNLQSNFFEGDI--SVFNFSTLLKLRVLD 323
           L NL  +    N +SG++P S  +   L T + +  N   G I  +  N    L L  +D
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN----LNLAFVD 203

Query: 324 LGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGA 383
           L  N+  G   +   S K+   ++LA+N L   +   +   K+L+ L L NN    I G 
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNN---RIYGT 259

Query: 384 IRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKL 443
           +                                                    P  + +L
Sbjct: 260 L----------------------------------------------------PQGLTQL 267

Query: 444 KKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478
           K L  L++SFN L G +P+  GN+       ++NN
Sbjct: 268 KFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (419), Expect = 4e-46
 Identities = 66/347 (19%), Positives = 118/347 (34%), Gaps = 90/347 (25%)

Query: 322 LDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQ--ISPGIVALKSLSFLSLSNNSLTN 379
            D  +  + G L  T      +  ++L+   L     I   +  L  L+FL +      N
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI--NN 88

Query: 380 ITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSW 439
           + G I                       P      +      L  L +    + G +P +
Sbjct: 89  LVGPI-----------------------P-----PAIAKLTQLHYLYITHTNVSGAIPDF 120

Query: 440 IGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQD 499
           + ++K L  LD S+N L+G++P  + ++ +L  I F  N ISG  P  +     L     
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT--- 177

Query: 500 KNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNN 559
                   +  S     N   G+   I                 +   L L  +DLS N 
Sbjct: 178 -------SMTIS----RNRLTGK---IPP---------------TFANLNLAFVDLSRNM 208

Query: 560 FSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP------ 613
             G+         N +++ L+KN L+ ++   +     L+  ++  N + G++P      
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 614 ------------------SGGQFDTFPSSSFRGNPDLCGAIVQRSCS 642
                              GG    F  S++  N  LCG+ +  +C+
Sbjct: 268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  159 bits (404), Expect = 5e-44
 Identities = 57/217 (26%), Positives = 90/217 (41%), Gaps = 10/217 (4%)

Query: 77  SHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQG 135
            +L++    ++G I   +  +  L  L+ S+N LSG  P S+SS   +  I    N   G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 136 KIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSC 195
            IP +    ++   +  +S N  TG I  +    +  ++  +DLS N   G   +  GS 
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPT---FANLNLAFVDLSRNMLEGDASVLFGSD 220

Query: 196 SRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNS 255
              +      N L   L   +  + +L  L L  N I G++  G+  L  L  L +  N+
Sbjct: 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 256 LTGLIPRDIGKLTNLESLVL-HNNSLSGSLPSSLKNC 291
           L G IP   G L   +     +N  L G   S L  C
Sbjct: 280 LCGEIP-QGGNLQRFDVSAYANNKCLCG---SPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 81.4 bits (202), Expect = 5e-17
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 6/111 (5%)

Query: 86  LTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLT 145
           L G  S+  G+  +   ++L+ N L+ +      S  +  +DL +N   G +P  + +L 
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 146 QNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCS 196
             L + NVS N+  G I       +         +NN+     P  L +C+
Sbjct: 269 -FLHSLNVSFNNLCGEIPQGG---NLQRFDVSAYANNKCLCGSP--LPACT 313

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  215 bits (550), Expect = 7e-62
 Identities = 94/555 (16%), Positives = 189/555 (34%), Gaps = 68/555 (12%)

Query: 78  HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGK 136
           +L L +  L    S S  +   L  L+LS   +      +  S +++  + L+ N  Q  
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 137 IPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSC 195
                  L+ +L        +   L +    +    +++ L++++N      +P    + 
Sbjct: 92  ALGAFSGLS-SLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 196 SRLKTFRAGFNYLTGSLPDDIYTATSLE----QLSLSFNHISGSIKNGIVNLTSLRILEL 251
           + L+      N +      D+     +      L LS N ++  I+ G      L  L L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTL 207

Query: 252 YSNSLTGLIPRD-IGKLTNLESLVLHNNSLSGSL------PSSLKNCINLTLLNLQSNFF 304
            +N  +  + +  I  L  LE   L                S+L+   NLT+   +  + 
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 305 E--GDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIV 362
           +   D  +  F+ L  +    L S         + N       + L   +     +  + 
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPTLKLK 325

Query: 363 ALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNL 422
           +LK L+F S    +  +        +   +L+ L +  N +      +    S  G  +L
Sbjct: 326 SLKRLTFTSNKGGNAFS-------EVDLPSLEFLDLSRNGLSFKGCCSQ---SDFGTTSL 375

Query: 423 QVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPR-FLGNMSSLFHIDFSNNLIS 481
           + L L+   +   + S    L++L+ LD   + L          ++ +L ++D S+    
Sbjct: 376 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 482 GEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASA 541
             F   F  L +L             L+ +     N+F   +                  
Sbjct: 435 VAFNGIFNGLSSLE-----------VLKMA----GNSFQENFLP---------------- 463

Query: 542 AVSLLRLL--LHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLS 599
              +   L  L  LDLS        P   + L++L+ +++S N+         K L+ L 
Sbjct: 464 --DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521

Query: 600 AFNVAENNLRGSIPS 614
             + + N++  S   
Sbjct: 522 VLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  214 bits (546), Expect = 3e-61
 Identities = 106/543 (19%), Positives = 184/543 (33%), Gaps = 75/543 (13%)

Query: 104 NLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLIS 163
                    + P +L  +  K +DLS N  +     + F     L   ++S      +  
Sbjct: 13  QCMELNFY-KIPDNLPFS-TKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIED 69

Query: 164 WSAWVDSFC---SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTAT 220
                 ++     +  L L+ N             S L+   A    L       I    
Sbjct: 70  -----GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 221 SLEQLSLSFNHI-SGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLE----SLVL 275
           +L++L+++ N I S  +     NLT+L  L+L SN +  +   D+  L  +     SL L
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 276 HNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPI 335
             N ++   P + K  I L  L L++NF   ++       L  L V  L    F     +
Sbjct: 185 SLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 336 T---LNSCKSLTAVNLARNQLE------GQISPGIVALKSLSFLSLSNNSLTNITGAIRI 386
                ++ + L  + +   +L         I      L ++S  SL + ++  +      
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSY 302

Query: 387 LMGCKNLKVLIIPLNFMDETMPDNDR-----------LTSANGFKNLQVLGLAECKL--K 433
             G ++L+++             + +             S     +L+ L L+   L  K
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362

Query: 434 GQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKE-FCRLP 492
           G           L+ LDLSFN +      FL  +  L H+DF ++ +        F  L 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 493 ALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHM 552
            L            YL+ S      +    +  I                       L +
Sbjct: 422 NLI-----------YLDIS----HTHTRVAFNGIFNGLSS-----------------LEV 449

Query: 553 LDLSHNNFSGNI-PDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGS 611
           L ++ N+F  N  PD  ++L NL  +DLS+  L    P +   L  L   N++ NN    
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 612 IPS 614
              
Sbjct: 510 DTF 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  198 bits (505), Expect = 1e-55
 Identities = 97/569 (17%), Positives = 183/569 (32%), Gaps = 85/569 (14%)

Query: 86  LTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSN-YIKIIDLSSNHFQGKIPSTIFRL 144
           +      +  +L+HLS L L+ N +      + S    ++ +     +        I  L
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 145 TQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRA- 203
              L   NV++N          +  +  ++ HLDLS+N+        L    ++      
Sbjct: 124 K-TLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 204 ---GFNYLTGSLPDDIYTATSLEQLSLSFNHISGSI-KNGIVNLTSLRILELYSNSLTG- 258
                N +   +    +    L +L+L  N  S ++ K  I  L  L +  L        
Sbjct: 182 LDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 259 -----LIPRDIGKLTNLESLVLHNNSLSGS---LPSSLKNCINLTLLNLQSNFFEGDISV 310
                     +  L NL         L      +        N++  +L S   E    V
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---V 297

Query: 311 FNFSTLLKLRVLDLGSNLFT-------------------GSLPITLNSCKSLTAVNLARN 351
            +FS     + L+L +  F                    G    +     SL  ++L+RN
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 352 QL--EGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPD 409
            L  +G  S       SL +L LS N +  ++      +G + L+ L    + + +    
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSE- 413

Query: 410 NDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSV-PRFLGNMS 468
               +     +NL  L ++    +         L  L+VL ++ N    +  P     + 
Sbjct: 414 ---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 469 SLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILT 528
           +L  +D S   +    P  F  L +L                 L    NN          
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQ---------------VLNMSHNN--------FF 507

Query: 529 FHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQL-TNLERMDLSKNHLSGE 587
             + + +K   S         L +LD S N+   +   ++    ++L  ++L++N  +  
Sbjct: 508 SLDTFPYKCLNS---------LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558

Query: 588 IPVS--LKRLHFLSAFNVAENNLRGSIPS 614
                 L+ +       V    +  + PS
Sbjct: 559 CEHQSFLQWIKDQRQLLVEVERMECATPS 587

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  188 bits (479), Expect = 6e-52
 Identities = 103/542 (19%), Positives = 187/542 (34%), Gaps = 69/542 (12%)

Query: 78  HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRL-SGEFPSSLSS-NYIKIIDLSSNHFQG 135
            L      L    +  IG+L  L  LN++HN + S + P   S+   ++ +DLSSN  Q 
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 136 KIPSTIFRLTQ---NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP-LG 191
              + +  L Q     ++ ++S N    +   +        +  L L NN  +  V    
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA---FKEIRLHKLTLRNNFDSLNVMKTC 220

Query: 192 LGSCSRLKTFRAGFNYLTGS---LPDDIYTATSLEQLSLSFNHIS------GSIKNGIVN 242
           +   + L+  R               D      L  L++    ++        I +    
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 243 LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN 302
           LT++    L S ++  +           + L L N          LK+   LT  + +  
Sbjct: 281 LTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 303 FFEGDISVFNFSTLLKLRVLDLGSN--LFTGSLPITLNSCKSLTAVNLARNQLEGQISPG 360
                 + F+   L  L  LDL  N   F G    +     SL  ++L+ N +   +S  
Sbjct: 339 ------NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391

Query: 361 IVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFK 420
            + L+ L  L   +++L  ++    + +  +NL  L I                  NG  
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNG-----IFNGLS 445

Query: 421 NLQVLGLAECKLKGQV-PSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNL 479
           +L+VL +A    +    P    +L+ L  LDLS  QL    P    ++SSL  ++ S+N 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

Query: 480 ISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTA 539
                   +  L +L                 L    N+ +   K+ L            
Sbjct: 506 FFSLDTFPYKCLNSLQ---------------VLDYSLNHIMTSKKQEL------------ 538

Query: 540 SAAVSLLRLLLHMLDLSHNNFSGNIPDQ--ISQLTNLERMDLSKNHLSGEIPVSLKRLHF 597
                     L  L+L+ N+F+     Q  +  + +  ++ +    +    P   + +  
Sbjct: 539 ----QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPV 594

Query: 598 LS 599
           LS
Sbjct: 595 LS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  176 bits (449), Expect = 8e-48
 Identities = 84/458 (18%), Positives = 136/458 (29%), Gaps = 34/458 (7%)

Query: 169 DSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLS 228
                          F   +P  L      K     FN L        ++   L+ L LS
Sbjct: 4   VEVVPNITYQCMELNFYK-IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60

Query: 229 FNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL 288
              I         +L+ L  L L  N +  L       L++L+ LV    +L+      +
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 289 KNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAV-- 346
            +   L  LN+  N  +       FS L  L  LDL SN         L     +  +  
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 347 --NLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLN-FM 403
             +L+ N +   I PG      L  L+L NN  + +      + G   L+V  + L  F 
Sbjct: 181 SLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDS-LNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 404 DETMPDNDRLTSANGFKNLQVLGLAECKLK---GQVPSWIGKLKKLQVLDLSFNQLTGSV 460
           +E   +    ++  G  NL +       L      +      L  +    L    +    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 461 PRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKG---SN 517
                      H++  N         +   L  LT   +K     S ++    +    S 
Sbjct: 299 D--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356

Query: 518 NFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERM 577
           N +             T               L  LDLS N     +      L  LE +
Sbjct: 357 NGLSFKGCCSQSDFGTT--------------SLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401

Query: 578 DLSKNHLSGEIPVS-LKRLHFLSAFNVAENNLRGSIPS 614
           D   ++L      S    L  L   +++  + R +   
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  139 bits (352), Expect = 6e-35
 Identities = 53/289 (18%), Positives = 96/289 (33%), Gaps = 12/289 (4%)

Query: 91  SLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNH--FQGKIPSTIFRLTQNL 148
                 L  L  L  + N+    F      + ++ +DLS N   F+G    + F  T +L
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTT-SL 375

Query: 149 ITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLG-LGSCSRLKTFRAGFNY 207
              ++S N    + S          + HLD  ++            S   L        +
Sbjct: 376 KYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 208 LTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIV-NLTSLRILELYSNSLTGLIPRDIGK 266
              +        +SLE L ++ N    +    I   L +L  L+L    L  L P     
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 267 LTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGS 326
           L++L+ L + +N+         K   +L +L+   N                L  L+L  
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 327 NLFTGSLPIT--LNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLS 373
           N F  +      L   K    + +   ++E   +P       +  L+++
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECA-TPSDKQGMPVLSLNIT 600

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  200 bits (510), Expect = 3e-56
 Identities = 96/527 (18%), Positives = 173/527 (32%), Gaps = 62/527 (11%)

Query: 102 HLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGL 161
             N  +  L+ E P +L ++  + ++ S N     I +T F    NL   +++      +
Sbjct: 16  TYNCENLGLN-EIPGTLPNS-TECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 162 ISWSAWVDSFC---SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYT 218
                  D+F     +  L L+ N         L     LK        ++      ++ 
Sbjct: 73  HE-----DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 219 ATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLH-- 276
             +LE L L  NHIS            L++L+  +N++  L   D+  L    +L L+  
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187

Query: 277 NNSLSGSLPSSLKNCINLTLLNLQSNFFEGD-ISVFNFSTLLKLRVLDLGSNLFTGSLPI 335
            N ++  +     +      LN                ST+  L +            P 
Sbjct: 188 GNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

Query: 336 TLNSCK--SLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNL 393
                   S+ ++NL ++      S        L  L L+   L+ +   +    G   L
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV---GLSTL 303

Query: 394 KVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSW-IGKLKKLQVLDLS 452
           K L++  N  +          SA+ F +L  L +     + ++ +  +  L+ L+ LDLS
Sbjct: 304 KKLVLSANKFENLCQI-----SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 453 FNQLTGS--VPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEF 510
            + +  S      L N+S L  ++ S N       + F   P L             L+ 
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE-----------LLDL 407

Query: 511 SLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQ 570
           +                           A +    L LL   L+LSH+    +       
Sbjct: 408 A----FTRLKV---------------KDAQSPFQNLHLLKV-LNLSHSLLDISSEQLFDG 447

Query: 571 LTNLERMDLSKNHLSGEIPV---SLKRLHFLSAFNVAENNLRGSIPS 614
           L  L+ ++L  NH          SL+ L  L    ++  +L      
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  195 bits (497), Expect = 2e-54
 Identities = 93/571 (16%), Positives = 173/571 (30%), Gaps = 90/571 (15%)

Query: 86  LTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLT 145
           L    + +   L +L+ L+L+  ++                          I    F+  
Sbjct: 45  LPTIQNTTFSRLINLTFLDLTRCQIYW------------------------IHEDTFQSQ 80

Query: 146 QNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGF 205
             L T  ++ N    +      +    +++HL       +    + L +   L++   G 
Sbjct: 81  HRLDTLVLTANPLIFMA--ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138

Query: 206 NYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY--SNSLTGLIPRD 263
           N+++       +    L+ L    N I    K  + +L     L L    N + G I   
Sbjct: 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPG 197

Query: 264 IGKLTNLESLVLHNNSLSGSLPSSLKNC--INLTLLNLQSNFFEG-DISVFNFSTLLKLR 320
                  +SL          +   LKN    +L L   +    E    +VF     + + 
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

Query: 321 VLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNI 380
            ++L  + F      T +    L  ++L    L  ++  G+V L +L  L LS N   N+
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL 316

Query: 381 TGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLK--GQVPS 438
                      +L  L I  N     +            +NL+ L L+   ++       
Sbjct: 317 CQ--ISASNFPSLTHLSIKGNTKRLELGTG----CLENLENLRELDLSHDDIETSDCCNL 370

Query: 439 WIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKE-FCRLPALTPE 497
            +  L  LQ L+LS+N+              L  +D +   +  +  +  F  L  L   
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK-- 428

Query: 498 QDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSH 557
                     L       S++ +                 ++      L  L H L+L  
Sbjct: 429 ---------VLNL-----SHSLL---------------DISSEQLFDGLPALQH-LNLQG 458

Query: 558 NNFSGNI---PDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP- 613
           N+F        + +  L  LE + LS   LS     +   L  ++  +++ N L  S   
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 614 ------------SGGQFDTFPSSSFRGNPDL 632
                       +         S        
Sbjct: 519 ALSHLKGIYLNLASNHISIILPSLLPILSQQ 549

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  194 bits (494), Expect = 5e-54
 Identities = 84/426 (19%), Positives = 156/426 (36%), Gaps = 16/426 (3%)

Query: 78  HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFP---SSLSSNYIKIIDLSSNHFQ 134
            L+L    ++            L  L+  +N +        SSL       ++L+ N   
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 135 GKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGS 194
           G I    F       + N        +I       +  S+      +       P     
Sbjct: 193 G-IEPGAFDSA-VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 195 CSR--LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY 252
                +++     +Y      +  +  + L++L L+  H+S  + +G+V L++L+ L L 
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLS 309

Query: 253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPS-SLKNCINLTLLNLQSNFFEG-DISV 310
           +N    L         +L  L +  N+    L +  L+N  NL  L+L  +  E  D   
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 311 FNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI-VALKSLSF 369
                L  L+ L+L  N            C  L  ++LA  +L+ + +      L  L  
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 370 LSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAE 429
           L+LS++ L     + ++  G   L+ L +  N   +   +  +  S      L++L L+ 
Sbjct: 430 LNLSHSLLDIS--SEQLFDGLPALQHLNLQGNHFPKG--NIQKTNSLQTLGRLEILVLSF 485

Query: 430 CKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFC 489
           C L          LK +  +DLS N+LT S    L ++  + +++ ++N IS   P    
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544

Query: 490 RLPALT 495
            L    
Sbjct: 545 ILSQQR 550

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  193 bits (493), Expect = 7e-54
 Identities = 93/537 (17%), Positives = 184/537 (34%), Gaps = 54/537 (10%)

Query: 86  LTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRL 144
           +      +  +   L  L L+ N L     ++LS    +K +          I       
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHN 127

Query: 145 TQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLK--TFR 202
            + L +  + +N  + +            ++ LD  NN         + S  +    +  
Sbjct: 128 QKTLESLYLGSNHISSIKLPK--GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

Query: 203 AGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVN--LTSLRILELYSNSLTGLI 260
              N +   +    + +   + L+         I  G+ N  + SL +          + 
Sbjct: 186 LNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 261 PRDIGKL--TNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFN--FSTL 316
           P     L   ++ES+ L  +       ++      L  L+L +      +S        L
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT----HLSELPSGLVGL 300

Query: 317 LKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA-LKSLSFLSLSNN 375
             L+ L L +N F     I+ ++  SLT +++  N    ++  G +  L++L  L LS++
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 376 SLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG- 434
            +         L    +L+ L +  N       +     +      L++L LA  +LK  
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-----AFKECPQLELLDLAFTRLKVK 415

Query: 435 QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPAL 494
              S    L  L+VL+LS + L  S  +    + +L H++   N       ++   L  L
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

Query: 495 TPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLD 554
                        L  S      +     +   T  +                  ++ +D
Sbjct: 476 G--------RLEILVLS----FCDLSSIDQHAFTSLKM-----------------MNHVD 506

Query: 555 LSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGS 611
           LSHN  + +  + +S L  +  ++L+ NH+S  +P  L  L      N+ +N L  +
Sbjct: 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 85  GLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRL 144
            L+     +  +L  ++H++LSHNRL+     +LS      ++L+SNH    I  ++  +
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISI-ILPSLLPI 545

Query: 145 TQNLITFNVSNNSFTG 160
                T N+  N    
Sbjct: 546 LSQQRTINLRQNPLDC 561

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  189 bits (482), Expect = 2e-52
 Identities = 90/549 (16%), Positives = 173/549 (31%), Gaps = 73/549 (13%)

Query: 98  THLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNN 156
           +   +++LS N L      S S+ + ++ +DLS    +  I    +    +L    ++ N
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGN 90

Query: 157 SFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG-SLPDD 215
                           S+ +L     +        +G    LK      N++    LP  
Sbjct: 91  PIQSFSP--GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 216 IYTATSLEQLSLSFNHISGSIKNGIVNLTSLRI----LELYSNSLTGLIPRDIGKLTNLE 271
               T+L  + LS+N+I     N +  L         L++  N +   I     +   L 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLH 207

Query: 272 SLVLHNNSLSGSLPS-SLKNCINLTLLNLQSNFFEG-------DISVFNFSTLLKLRVLD 323
            L L  N  S ++    L+N   L +  L    F+        + S+      + +    
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 324 LGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGA 383
           L          +  +   +++A++LA   ++      +        LS+    L      
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTL 325

Query: 384 -----------------IRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLG 426
                                +   +L  L +  N +  +   +    S  G  +L+ L 
Sbjct: 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCS---YSDLGTNSLRHLD 382

Query: 427 LAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPR-FLGNMSSLFHIDFSNNLISGEFP 485
           L+       + +    L++LQ LD   + L          ++  L ++D S      +F 
Sbjct: 383 LSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 486 KEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSL 545
             F  L +L             L+ +     N+F                  T S   + 
Sbjct: 442 GIFLGLTSLN-----------TLKMA----GNSFKD---------------NTLSNVFAN 471

Query: 546 LRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAE 605
              L   LDLS              L  L+ +++S N+L         +L+ LS  + + 
Sbjct: 472 TTNLTF-LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 606 NNLRGSIPS 614
           N +  S   
Sbjct: 531 NRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  182 bits (464), Expect = 6e-50
 Identities = 101/540 (18%), Positives = 176/540 (32%), Gaps = 65/540 (12%)

Query: 86  LTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSN-YIKIIDLSSNHFQGKIPSTIFRL 144
           +      +   L HLS+L L+ N +    P S S    ++ +          + S     
Sbjct: 68  IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQ 126

Query: 145 TQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRA- 203
              L   NV++N         A+  +  ++ H+DLS N         L            
Sbjct: 127 LITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 204 ---GFNYLTGSLPDDIYTATSLEQLSLSFNHISGSI-KNGIVNLTSLRILELYSNSLTGL 259
                N +   + D  +    L +L+L  N  S +I K  + NL  L +  L        
Sbjct: 186 LDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 260 IPRDIGKLTNLESLV--------LHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVF 311
              +I + + +E L         L   +             N++ ++L     +    + 
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK---YLE 301

Query: 312 NFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLS 371
           +     K + L +                  L ++ L  N+    IS   VAL SLS+L 
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLD 356

Query: 372 LSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECK 431
           LS N+L+         +G  +L+ L   L+F    +       +  G + LQ L      
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLD--LSFNGAIIMSA----NFMGLEELQHLDFQHST 410

Query: 432 LKGQVP-SWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFS-NNLISGEFPKEFC 489
           LK     S    L+KL  LD+S+             ++SL  +  + N+         F 
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 490 RLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLL 549
               LT           +L+ S              +     +                 
Sbjct: 471 NTTNLT-----------FLDLS----KCQLEQISWGVFDTLHR----------------- 498

Query: 550 LHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR 609
           L +L++SHNN         +QL +L  +D S N +     +       L+ FN+  N++ 
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  164 bits (418), Expect = 1e-43
 Identities = 83/447 (18%), Positives = 149/447 (33%), Gaps = 49/447 (10%)

Query: 85  GLTGTISLSIGNLTHLSHLNLSHNRLSG-EFPSSLSS-NYIKIIDLSSNHFQGKIPSTIF 142
            L    S  IG L  L  LN++HN +   + P+  S+   +  +DLS N+ Q  I     
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDL 173

Query: 143 R----LTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP-LGLGSCSR 197
           +      Q  ++ ++S N    +            +  L L  N  +  +    L + + 
Sbjct: 174 QFLRENPQVNLSLDMSLNPIDFI---QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG 230

Query: 198 LKTFRAGFNYLTGSLPDDIYTATSLE--------QLSLSFNHISGSIKNGIVNLTSLRIL 249
           L   R            +I+  + +E        +  L++ +           L ++  +
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290

Query: 250 ELYSNSLTGLIPRDIGKLTNLESLVLHNNSLS-------------------GSLPSSLKN 290
            L   S+  L   D+ K    +SL +    L                    GS+      
Sbjct: 291 SLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVA 348

Query: 291 CINLTLLNLQSNFFEG-DISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLA 349
             +L+ L+L  N         ++      LR LDL  N     +       + L  ++  
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQ 407

Query: 350 RNQLEGQISPGIVA-LKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMP 408
            + L+          L+ L +L +S  +         I +G  +L  L +  N   +   
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF--DGIFLGLTSLNTLKMAGNSFKDNTL 465

Query: 409 DNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMS 468
            N          NL  L L++C+L+         L +LQ+L++S N L          + 
Sbjct: 466 SN----VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 469 SLFHIDFSNNLISGEFPKEFCRLPALT 495
           SL  +D S N I            +L 
Sbjct: 522 SLSTLDCSFNRIETSKGILQHFPKSLA 548

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  164 bits (416), Expect = 2e-43
 Identities = 89/534 (16%), Positives = 161/534 (30%), Gaps = 75/534 (14%)

Query: 112 GEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSF 171
           G     +                 K+P  I   T+N+   ++S N    L S+S    +F
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLS-KVPDDIPSSTKNI---DLSFNPLKILKSYS--FSNF 55

Query: 172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH 231
             ++ LDLS                 L       N +    P      TSLE L      
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115

Query: 232 ISGSIKNGIVNLTSLRILELYSNSLTGL-IPRDIGKLTNLESLVLHNNSLSGSLPSSLKN 290
           ++      I  L +L+ L +  N +    +P     LTNL  + L  N +     + L+ 
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 291 CINLTL----LNLQSNFFEG-DISVFNFSTLLKLRVLDLGSNLFTGSLP-ITLNSCKSLT 344
                     L++  N  +      F     +KL  L L  N  + ++    L +   L 
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQ---GIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 345 AVNLARNQLEGQISPGIVA------LKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLII 398
              L   + + + +  I        L  ++          + +  I       N+  + +
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 399 PLNFMDETMPDNDRLTS---------------ANGFKNLQVLGLAECKLKGQVPSWIGKL 443
               + + + D  +                        L+ L L   K    +      L
Sbjct: 293 AGVSI-KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVAL 349

Query: 444 KKLQVLDLSFNQLTGSVPRFLGNM--SSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKN 501
             L  LDLS N L+ S      ++  +SL H+D S N         F  L  L       
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQ------ 402

Query: 502 KANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFS 561
                +L+F      ++       +    E   + +            L  LD+S+ N  
Sbjct: 403 -----HLDF-----QHS------TLKRVTEFSAFLSLEK---------LLYLDISYTNTK 437

Query: 562 GNIPDQISQLTNLERMDLSKNHLSGEIPVS-LKRLHFLSAFNVAENNLRGSIPS 614
            +       LT+L  + ++ N        +       L+  ++++  L      
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  159 bits (404), Expect = 1e-43
 Identities = 76/389 (19%), Positives = 144/389 (37%), Gaps = 59/389 (15%)

Query: 93  SIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152
              +L       L    ++                            T   L  ++    
Sbjct: 17  PDADLAEGIRAVLQKASVTD-------------------------VVTQEELE-SITKLV 50

Query: 153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSL 212
           V+      +      ++   ++ +L+L+ N+ T   P  L +  +L     G N +T   
Sbjct: 51  VAGEKVASIQG----IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-- 102

Query: 213 PDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLES 272
              +   T+L +L L+ ++IS      + NLT +  L L +N     +   +  +T L  
Sbjct: 103 ISALQNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNY 159

Query: 273 LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGS 332
           L +  + +     + + N  +L  L+L  N  E DIS    ++L  L       N  T  
Sbjct: 160 LTVTESKVKDV--TPIANLTDLYSLSLNYNQIE-DIS--PLASLTSLHYFTAYVNQITDI 214

Query: 333 LPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKN 392
            P  + +   L ++ +  N++       +  L  L++L +  N +++I      +     
Sbjct: 215 TP--VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDINA----VKDLTK 266

Query: 393 LKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLS 452
           LK+L +  N + +       ++  N    L  L L   +L  +    IG L  L  L LS
Sbjct: 267 LKMLNVGSNQISD-------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 453 FNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481
            N +T   P  L ++S +   DF+N +I 
Sbjct: 320 QNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  149 bits (380), Expect = 3e-40
 Identities = 77/353 (21%), Positives = 132/353 (37%), Gaps = 41/353 (11%)

Query: 146 QNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGF 205
              I   +   S T +++     +   SI  L ++  +       G+   + L+      
Sbjct: 22  AEGIRAVLQKASVTDVVT----QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNG 75

Query: 206 NYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIG 265
           N +T   P  +     L  L +  N I+  I   + NLT+LR L L  ++++ + P  + 
Sbjct: 76  NQITDISP--LSNLVKLTNLYIGTNKIT-DISA-LQNLTNLRELYLNEDNISDISP--LA 129

Query: 266 KLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLG 325
            LT + SL L  N    S  S L N   L  L +  +  +    V   + L  L  L L 
Sbjct: 130 NLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVK---DVTPIANLTDLYSLSLN 185

Query: 326 SNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIR 385
            N      P  L S  SL       NQ+       +  +  L+ L + NN +T+++    
Sbjct: 186 YNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--- 238

Query: 386 ILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGF---KNLQVLGLAECKLKGQVPSWIGK 442
            L     L  L I  N          +++  N       L++L +   ++     S +  
Sbjct: 239 -LANLSQLTWLEIGTN----------QISDINAVKDLTKLKMLNVGSNQISD--ISVLNN 285

Query: 443 LKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALT 495
           L +L  L L+ NQL       +G +++L  +  S N I+   P     L  + 
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (351), Expect = 2e-36
 Identities = 76/393 (19%), Positives = 145/393 (36%), Gaps = 71/393 (18%)

Query: 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNS 279
               +  L    ++  +      L S+  L +    +  +    I  LTNLE L L+ N 
Sbjct: 22  AEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQ 77

Query: 280 LSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS 339
           ++    S L N + LT L + +N    DIS      L  LR L L  +  +   P  L +
Sbjct: 78  ITD--ISPLSNLVKLTNLYIGTNKIT-DIS--ALQNLTNLRELYLNEDNISDISP--LAN 130

Query: 340 CKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIP 399
              + ++NL  N     +SP +  +  L++L+++ + + ++T     +    +L  L + 
Sbjct: 131 LTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSL- 184

Query: 400 LNFMDETMPDNDRLTSANGF---KNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQL 456
                    + +++   +      +L        ++    P  +  + +L  L +  N++
Sbjct: 185 ---------NYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233

Query: 457 TGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGS 516
           T   P  L N+S L  ++   N IS         L  L             L        
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLK-----------MLNVG----- 273

Query: 517 NNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLER 576
           +N I +   +    +                  L+ L L++N       + I  LTNL  
Sbjct: 274 SNQISDISVLNNLSQ------------------LNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 577 MDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR 609
           + LS+NH++   P  L  L  + + + A   ++
Sbjct: 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (316), Expect = 1e-31
 Identities = 71/395 (17%), Positives = 130/395 (32%), Gaps = 71/395 (17%)

Query: 222 LEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLS 281
              L+     I+        +L       L   S+T ++     +L ++  LV+    ++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 282 GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCK 341
                 ++   NL  LNL  N       +   S L+KL  L +G+N  T      L +  
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKITD--ISALQNLT 110

Query: 342 SLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLN 401
           +L  + L  + +       +  L  +  L+L  N   +    +  L     L  L +   
Sbjct: 111 NLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD---LSPLSNMTGLNYLTV--- 162

Query: 402 FMDETMPDNDRLTSANGF---KNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG 458
                     ++          +L  L L   +++   P  +  L  L       NQ+T 
Sbjct: 163 -------TESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213

Query: 459 SVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNN 518
             P  + NM+ L  +   NN I+         L  LT                +     N
Sbjct: 214 ITP--VANMTRLNSLKIGNNKITD--LSPLANLSQLT-------------WLEI---GTN 253

Query: 519 FIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMD 578
            I                +  +A   L +L   ML++  N  S      ++ L+ L  + 
Sbjct: 254 QI----------------SDINAVKDLTKL--KMLNVGSNQISD--ISVLNNLSQLNSLF 293

Query: 579 LSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP 613
           L+ N L  E    +  L  L+   +++N++    P
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.0 bits (245), Expect = 2e-22
 Identities = 49/250 (19%), Positives = 99/250 (39%), Gaps = 42/250 (16%)

Query: 78  HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKI 137
            L L        +S  + N+T L++L ++ +++              +  +++       
Sbjct: 136 SLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK------------DVTPIANLT----- 177

Query: 138 PSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSR 197
                    +L + +++ N    +      + S  S+ +     N+ T   P  + + +R
Sbjct: 178 ---------DLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDITP--VANMTR 222

Query: 198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLT 257
           L + + G N +T   P  +   + L  L +  N IS    N + +LT L++L + SN ++
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS 278

Query: 258 GLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLL 317
            +    +  L+ L SL L+NN L       +    NLT L L  N       +   ++L 
Sbjct: 279 DISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT---DIRPLASLS 333

Query: 318 KLRVLDLGSN 327
           K+   D  + 
Sbjct: 334 KMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 7e-05
 Identities = 25/175 (14%), Positives = 52/175 (29%), Gaps = 42/175 (24%)

Query: 440 IGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQD 499
              L +     L    +T  V      + S+  +  +   ++    +    L  L     
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLE---- 69

Query: 500 KNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNN 559
                  YL  +      N I +   +    +                  L  L +  N 
Sbjct: 70  -------YLNLN-----GNQITDISPLSNLVK------------------LTNLYIGTNK 99

Query: 560 FSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPS 614
            +      +  LTNL  + L+++++S   P  L  L  + + N+  N+    +  
Sbjct: 100 IT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP 150

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  161 bits (410), Expect = 2e-43
 Identities = 107/501 (21%), Positives = 177/501 (35%), Gaps = 54/501 (10%)

Query: 93  SIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152
           +   L       L    ++     +     +  +         K    +  L  NL   N
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVSQTDLDQ-VTTLQADRL--GIKSIDGVEYLN-NLTQIN 74

Query: 153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSL 212
            SNN  T +      + +   +  + ++NN+     P  L + + L       N +T   
Sbjct: 75  FSNNQLTDITP----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-- 126

Query: 213 PDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLES 272
            D +   T+L +L LS N IS    + +  LTSL+ L    N +T L P  +  LT LE 
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSF-GNQVTDLKP--LANLTTLER 181

Query: 273 LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGS 332
           L + +N +S    S L    NL  L   +N       +     L  L  L L  N     
Sbjct: 182 LDISSNKVSD--ISVLAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKD- 235

Query: 333 LPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKN 392
              TL S  +LT ++LA NQ+       +  L  L+ L L  N ++NI+     L G   
Sbjct: 236 -IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP----LAGLTA 288

Query: 393 LKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLS 452
           L  L +  N +++       ++  +  KNL  L L    +    P  +  L KLQ L   
Sbjct: 289 LTNLELNENQLED-------ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339

Query: 453 FNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSL 512
            N+++      L N++++  +   +N IS         L  +T         +  L    
Sbjct: 340 NNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRIT---------QLGLNDQA 386

Query: 513 FKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLT 572
           +  +         I    +  T    A A +S         D++ N  S    +     +
Sbjct: 387 WTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTE-PDITWNLPSYT-NEVSYTFS 444

Query: 573 NLERMDLSKNHLSGEIPVSLK 593
               +       SG +   LK
Sbjct: 445 QPVTIGKGTTTFSGTVTQPLK 465

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  158 bits (403), Expect = 2e-42
 Identities = 94/425 (22%), Positives = 172/425 (40%), Gaps = 45/425 (10%)

Query: 78  HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGK 136
              L    +T T+S +  +L  ++ L      +       +   N +  I+ S+N     
Sbjct: 28  KTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI 83

Query: 137 IPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCS 196
            P  +  LT  L+   ++NN    +      + +  ++  L L NN+ T   P  L + +
Sbjct: 84  TP--LKNLT-KLVDILMNNNQIADITP----LANLTNLTGLTLFNNQITDIDP--LKNLT 134

Query: 197 RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSL 256
            L       N ++      +   TSL+QLS   N ++      + NLT+L  L++ SN +
Sbjct: 135 NLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189

Query: 257 TGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTL 316
           + +    + KLTNLESL+  NN +S    + L    NL  L+L  N  + DI     ++L
Sbjct: 190 SDISV--LAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLK-DIG--TLASL 242

Query: 317 LKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNS 376
             L  LDL +N  +   P++      LT + L  NQ+       +  L +L+ L L+ N 
Sbjct: 243 TNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQ 298

Query: 377 LTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQV 436
           L +I+     +   KNL  L +  N + +       ++  +    LQ L     K+    
Sbjct: 299 LEDISP----ISNLKNLTYLTLYFNNISD-------ISPVSSLTKLQRLFFYNNKVSD-- 345

Query: 437 PSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTP 496
            S +  L  +  L    NQ++   P  L N++ +  +  ++   +         +     
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

Query: 497 EQDKN 501
            ++  
Sbjct: 404 VKNVT 408

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  152 bits (386), Expect = 3e-40
 Identities = 92/472 (19%), Positives = 158/472 (33%), Gaps = 77/472 (16%)

Query: 139 STIFRLTQ--NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCS 196
           + IF  T     +   +   + T  +S          +  L             G+   +
Sbjct: 15  NQIFTDTALAEKMKTVLGKTNVTDTVS----QTDLDQVTTLQADRLGIKSID--GVEYLN 68

Query: 197 RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSL 256
            L       N LT   P  +   T L  + ++ N I+      + NLT+L  L L++N +
Sbjct: 69  NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQI 124

Query: 257 TGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTL 316
           T + P  +  LTNL  L L +N++S    S+L    +L  L+  +        +   + L
Sbjct: 125 TDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQV----TDLKPLANL 176

Query: 317 LKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNS 376
             L  LD+ SN  +      L    +L ++    NQ+       +  L +L  LSL+ N 
Sbjct: 177 TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQ 232

Query: 377 LTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQV 436
           L +I      L    NL  L +  N +         L   +G   L  L L   ++    
Sbjct: 233 LKDIGT----LASLTNLTDLDLANNQISN-------LAPLSGLTKLTELKLGANQISNIS 281

Query: 437 PSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTP 496
           P  +  L  L  L+L+ NQL    P  + N+ +L ++    N IS         L  L  
Sbjct: 282 P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ- 334

Query: 497 EQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLS 556
                               NN + +   +                       ++ L   
Sbjct: 335 ------------RLFF---YNNKVSDVSSLANLTN------------------INWLSAG 361

Query: 557 HNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNL 608
           HN  S   P  ++ LT + ++ L+    +         +   +        L
Sbjct: 362 HNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  147 bits (374), Expect = 1e-38
 Identities = 93/460 (20%), Positives = 166/460 (36%), Gaps = 73/460 (15%)

Query: 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHI 232
                 L     T  V        ++ T +A    +     D +    +L Q++ S N +
Sbjct: 25  EKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQL 80

Query: 233 SGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCI 292
           +      + NLT L  + + +N +  + P  +  LTNL  L L NN ++      LKN  
Sbjct: 81  TDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--IDPLKNLT 134

Query: 293 NLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQ 352
           NL  L L SN       +   S L  L+ L  G+ +        L +  +L  ++++ N+
Sbjct: 135 NLNRLELSSNTIS---DISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNK 188

Query: 353 LEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDR 412
           +       +  L +L  L  +NN +++IT     L    NL  L +  N + +       
Sbjct: 189 VSDI--SVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKD------- 235

Query: 413 LTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFH 472
           + +     NL  L LA  ++     + +  L KL  L L  NQ++   P  L  +++L +
Sbjct: 236 IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LAGLTALTN 291

Query: 473 IDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQ 532
           ++ + N +          L  LT           YL         N I            
Sbjct: 292 LELNENQLED--ISPISNLKNLT-----------YLTLY-----FNNI------------ 321

Query: 533 YTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSL 592
                +  + VS L  L   L   +N  S      ++ LTN+  +    N +S   P  L
Sbjct: 322 -----SDISPVSSLTKL-QRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--L 371

Query: 593 KRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDL 632
             L  ++   + +     +  +     + P++       L
Sbjct: 372 ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (304), Expect = 2e-29
 Identities = 76/375 (20%), Positives = 134/375 (35%), Gaps = 67/375 (17%)

Query: 239 GIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLN 298
               L       L   ++T  +      L  + +L      +       ++   NLT +N
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 299 LQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQIS 358
             +N    DI+      L KL  + + +N      P  L +  +LT + L  NQ+     
Sbjct: 75  FSNNQLT-DIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--I 127

Query: 359 PGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANG 418
             +  L +L+ L LS+N++++I+     L G  +L+ L       D        L     
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISA----LSGLTSLQQLSFGNQVTD--------LKPLAN 175

Query: 419 FKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478
              L+ L ++  K+     S + KL  L+ L  + NQ++   P  LG +++L  +  + N
Sbjct: 176 LTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 231

Query: 479 LISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTT 538
            +          L  LT             +  L   +NN I     +    +       
Sbjct: 232 QLKD--IGTLASLTNLT-------------DLDL---ANNQISNLAPLSGLTK------- 266

Query: 539 ASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFL 598
                      L  L L  N  S   P  ++ LT L  ++L++N L    P  +  L  L
Sbjct: 267 -----------LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311

Query: 599 SAFNVAENNLRGSIP 613
           +   +  NN+    P
Sbjct: 312 TYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.2 bits (214), Expect = 6e-18
 Identities = 64/342 (18%), Positives = 111/342 (32%), Gaps = 65/342 (19%)

Query: 272 SLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG 331
           + +  +  ++     +           L        +S    + L ++  L         
Sbjct: 6   ATITQDTPINQI--FTDTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKS 60

Query: 332 SLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCK 391
                +    +LT +N + NQL       +  L  L  + ++NN + +IT     L    
Sbjct: 61  --IDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP----LANLT 112

Query: 392 NLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDL 451
           NL  L +  N + +       +       NL  L L+   +     S +  L  LQ L  
Sbjct: 113 NLTGLTLFNNQITD-------IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF 163

Query: 452 SFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFS 511
             NQ+T   P  L N+++L  +D S+N +S        +L  L                 
Sbjct: 164 G-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLE-------------SLI 205

Query: 512 LFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQL 571
               +NN I +   +                       L  L L+ N         ++ L
Sbjct: 206 A---TNNQISDITPLGILTN------------------LDELSLNGNQLKD--IGTLASL 242

Query: 572 TNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP 613
           TNL  +DL+ N +S   P  L  L  L+   +  N +    P
Sbjct: 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 49/272 (18%), Positives = 84/272 (30%), Gaps = 57/272 (20%)

Query: 342 SLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLN 401
            L +  + ++    QI     AL       L   ++T+             +  L     
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS----QTDLDQVTTLQADRL 56

Query: 402 FMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVP 461
            +         +       NL  +  +  +L    P  +  L KL  + ++ NQ+    P
Sbjct: 57  GIKS-------IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 107

Query: 462 RFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIG 521
             L N+++L  +   NN I+         L  L             LE S     +N I 
Sbjct: 108 --LANLTNLTGLTLFNNQITD--IDPLKNLTNLN-----------RLELS-----SNTIS 147

Query: 522 EYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSK 581
           +   +                       L  L    N  +   P  ++ LT LER+D+S 
Sbjct: 148 DISALSGLTS------------------LQQLSFG-NQVTDLKP--LANLTTLERLDISS 186

Query: 582 NHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP 613
           N +S      L +L  L +     N +    P
Sbjct: 187 NKVSD--ISVLAKLTNLESLIATNNQISDITP 216

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  152 bits (386), Expect = 1e-39
 Identities = 102/532 (19%), Positives = 182/532 (34%), Gaps = 76/532 (14%)

Query: 104 NLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLIS 163
                    + P +L  +  K +DLS N  +  + S  F     L   ++S      +  
Sbjct: 13  QCMELNFY-KIPDNLPFS-TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 164 WSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLE 223
            +    S   +  L L+ N             S L+   A    L       I    +L+
Sbjct: 70  GA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 224 QLSLSFNHI-SGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLE----SLVLHNN 278
           +L+++ N I S  +     NLT+L  L+L SN +  +   D+  L  +     SL L  N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 279 SLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPIT-- 336
            ++   P + K  I L  L L++NF   ++       L  L V  L    F     +   
Sbjct: 188 PMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 337 ----LNSCKSLTAVNLARNQLEGQISPGIVA---LKSLSFLSLSNNSLTNITGAIRILMG 389
               L    +LT        L+  +   I     L ++S  SL + ++  +        G
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFG 305

Query: 390 CKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVL 449
            ++L+++                       K+L+ L     K      S +  L  L+ L
Sbjct: 306 WQHLELVNCKFGQF-----------PTLKLKSLKRLTFTSNKGGN-AFSEVD-LPSLEFL 352

Query: 450 DLSFNQLT--GSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESY 507
           DLS N L+  G   +     +SL ++D S N +       F  L  L            +
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE-----------H 400

Query: 508 LEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQ 567
           L+F      ++       +    E   + +  +         L  LD+SH +        
Sbjct: 401 LDFQ-----HS------NLKQMSEFSVFLSLRN---------LIYLDISHTHTRVAFNGI 440

Query: 568 ISQLTNLERMDLSKNHLSGEIP----VSLKRLHFLSAFNVAENNLRGSIPSG 615
            + L++LE + ++ N             L+ L FL   ++++  L   +   
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL---DLSQCQLE-QLSPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  147 bits (374), Expect = 6e-38
 Identities = 102/553 (18%), Positives = 181/553 (32%), Gaps = 80/553 (14%)

Query: 98  THLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNN 156
               +L+LS N L      S  S   ++++DLS    Q  I    ++   +L T  ++ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 157 SFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLT-GSLPDD 215
               L           S++ L              +G    LK      N +    LP+ 
Sbjct: 87  PIQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 216 IYTATSLEQLSLSFNHISGSIKNGIVNLTSLRI----LELYSNSLTGLIPRDIGKLTNLE 271
               T+LE L LS N I       +  L  + +    L+L  N +   I     K   L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLH 203

Query: 272 SLVLHNNSLSGSLPS-SLKNCINLTLLNLQSNFFEG-------DISVFNFSTLLKLRVLD 323
            L L NN  S ++    ++    L +  L    F         D S       L +    
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 324 LGS-NLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI--------------------V 362
           L   + +   +    N   ++++ +L    +E ++                        +
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 363 ALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNL 422
            LKSL  L+ ++N   N        +   +L+ L +  N +      +    S  G  +L
Sbjct: 323 KLKSLKRLTFTSNKGGNAFS----EVDLPSLEFLDLSRNGLSFKGCCSQ---SDFGTTSL 375

Query: 423 QVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPR-FLGNMSSLFHIDFSNNLIS 481
           + L L+   +   + S    L++L+ LD   + L          ++ +L ++D S+    
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 482 GEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASA 541
             F   F  L +L             L+ +     N+F            Q  +      
Sbjct: 435 VAFNGIFNGLSSLE-----------VLKMA----GNSF------------QENFLPDIFT 467

Query: 542 AVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAF 601
            +  L  L    DLS        P   + L++L+ ++++ N L         RL  L   
Sbjct: 468 ELRNLTFL----DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523

Query: 602 NVAENNLRGSIPS 614
            +  N    S P 
Sbjct: 524 WLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (359), Expect = 5e-36
 Identities = 101/525 (19%), Positives = 174/525 (33%), Gaps = 66/525 (12%)

Query: 78  HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNY-IKIIDLSSNHFQGK 136
            L L    +      +  +L+HLS L L+ N +      + S    ++ +     +    
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-S 114

Query: 137 IPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCS 196
           + +      + L   NV++N          +  +  ++ HLDLS+N+        L    
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 197 RLKTFRA----GFNYLTGSLPDDIYTATSLEQLSLSFNHISGSI-KNGIVNLTSLRILEL 251
           ++           N +   +    +    L +L+L  N  S ++ K  I  L  L +  L
Sbjct: 174 QMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 252 YSNSLTG---LIPRDIGKLTNLESLVLHNNSLSG------SLPSSLKNCINLTLLNLQSN 302
                     L   D   L  L +L +    L+        +        N++  +L S 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 303 FFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIV 362
             E    V +FS     + L+L +  F           KSL  +    N+     +   V
Sbjct: 293 TIE---RVKDFSYNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKG--GNAFSEV 344

Query: 363 ALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNL 422
            L SL FL LS N L+      +   G  +LK L +  N +  TM  N       G + L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-----FLGLEQL 398

Query: 423 QVLGLAECKLKG-QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481
           + L      LK     S    L+ L  LD+S      +       +SSL  +  + N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 482 GEFPKE-FCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTAS 540
             F  + F  L  LT            L       S   +              + + +S
Sbjct: 459 ENFLPDIFTELRNLT---------FLDL-------SQCQL-------EQLSPTAFNSLSS 495

Query: 541 AAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLS 585
                    L +L+++ N           +LT+L+++ L  N   
Sbjct: 496 ---------LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  115 bits (289), Expect = 4e-27
 Identities = 68/383 (17%), Positives = 120/383 (31%), Gaps = 52/383 (13%)

Query: 89  TISLSIGNLTHLSHLNLSHNRLSGEFP----SSLSSNYIKIIDLSSNHFQGKIPSTIFRL 144
            I         L  L L +N  S          L+   +  + L     +G +       
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 145 TQNLITFNVSNNSFTGL-ISWSAWVDSFCSIRHL---DLSNNRFTGPVPL-GLGSCSRLK 199
            + L    +       L       +D F  + ++    L +                 L+
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 200 TFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLT-- 257
                F               SL++L+ + N    +     V+L SL  L+L  N L+  
Sbjct: 311 LVNCKFGQFPTLKL------KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFK 362

Query: 258 GLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLL 317
           G   +     T+L+ L L  N +  ++ S+      L  L+ Q +  +       F +L 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 318 KLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI-VALKSLSFLSLSNNS 376
            L  LD+       +     N   SL  + +A N  +    P I   L++L+FL LS   
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 377 LTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQV 436
           L  ++          +L+VL +                ++N  K++              
Sbjct: 482 LEQLSP--TAFNSLSSLQVLNM----------------ASNQLKSVP------------- 510

Query: 437 PSWIGKLKKLQVLDLSFNQLTGS 459
                +L  LQ + L  N    S
Sbjct: 511 DGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.4 bits (248), Expect = 6e-22
 Identities = 51/242 (21%), Positives = 88/242 (36%), Gaps = 14/242 (5%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN 155
              HL  +N    +       SL     K +  +SN               +L   ++S 
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSL-----KRLTFTSNKGGNAFS---EVDLPSLEFLDLSR 356

Query: 156 NSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDD 215
           N  +     S       S+++LDLS N     +        +L+      + L   + + 
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEF 414

Query: 216 IYTA--TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDI-GKLTNLES 272
                  +L  L +S  H   +       L+SL +L++  NS       DI  +L NL  
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 273 LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGS 332
           L L    L    P++  +  +L +LN+ SN  +  +    F  L  L+ + L +N +  S
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 533

Query: 333 LP 334
            P
Sbjct: 534 CP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 41/199 (20%), Positives = 74/199 (37%), Gaps = 25/199 (12%)

Query: 88  GTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQN 147
           G  S S    T L +L+LS N +     + L    ++ +D   ++ +     ++F   +N
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 148 LITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNY 207
           LI  ++S+       +     +   S+  L ++ N F                       
Sbjct: 423 LIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQENFL------------------ 462

Query: 208 LTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKL 267
                PD      +L  L LS   +         +L+SL++L + SN L  +      +L
Sbjct: 463 -----PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 268 TNLESLVLHNNSLSGSLPS 286
           T+L+ + LH N    S P 
Sbjct: 518 TSLQKIWLHTNPWDCSCPR 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  154 bits (391), Expect = 2e-39
 Identities = 99/546 (18%), Positives = 170/546 (31%), Gaps = 82/546 (15%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVS 154
            L     L LS N +     SS      +++++L S +    I    FR   NL   ++ 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 155 NNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPV--PLGLGSCSRLKTFRAGFNYLTG-S 211
           ++    L            +  L L     +  V       +   L       N +    
Sbjct: 82  SSKIYFLH--PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 212 LPDDIYTATSLEQLSLSFNHISGSIKNGIVNLT--SLRILELYSNSLTGLIPRDIGKLTN 269
           L        SL+ +  S N I    ++ +  L   +L    L +NSL   +  D GK  N
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 270 ------LESLVLHNNSLSGSLPSSLKNCI------------NLTLLNLQSNFFEG-DISV 310
                 LE L +  N  +  +  +  N I            ++       +  +  D + 
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 311 FNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA-LKSLSF 369
           F       +R LDL              + K L  +NLA N++  +I+      L +L  
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQV 318

Query: 370 LSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAE 429
           L+LS N L  +                                 ++  G   +  + L +
Sbjct: 319 LNLSYNLLGELYS-------------------------------SNFYGLPKVAYIDLQK 347

Query: 430 CKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFC 489
             +          L+KLQ LDL  N LT      +  + S+  I  S N +    PK   
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKINL 401

Query: 490 RLPALTPEQDKNKANESYLEFSLFKG------SNNFIGEYKKILTFHEQYTWKTTASAAV 543
               +   +++ +  +                + N         T  E            
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN----------P 451

Query: 544 SLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNV 603
           SL +L L    L     +    D    L++L+ + L+ N+L+   P     L  L   ++
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511

Query: 604 AENNLR 609
             N L 
Sbjct: 512 NSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  149 bits (378), Expect = 7e-38
 Identities = 94/551 (17%), Positives = 183/551 (33%), Gaps = 97/551 (17%)

Query: 96  NLTHLSHLNLSHNRLS-----GEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLIT 150
            L HL  L L    LS       +  +L +  +  +DLS N  +       F    +L +
Sbjct: 95  GLFHLFELRLYFCGLSDAVLKDGYFRNLKA--LTRLDLSKNQIRSLYLHPSFGKLNSLKS 152

Query: 151 FNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG 210
            + S+N    +           ++    L+ N     V +  G C         F  +  
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP------FRNMVL 206

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKL--T 268
            + D      +++      N IS S    ++    +       +++          L  +
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266

Query: 269 NLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
           ++  L L +  +        +   +L +LNL  N     I+   F  L  L+VL+L  NL
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNL 325

Query: 329 FTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILM 388
                         +  ++L +N +          L+ L  L L +N+LT I        
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF------ 379

Query: 389 GCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG-QVPSWIGKLKKLQ 447
              ++  +          +  N  +T         ++ L+E +L+   +  ++ ++  LQ
Sbjct: 380 -IPSIPDIF---------LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ 429

Query: 448 VLDLSFNQLTG-SVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANES 506
           +L L+ N+ +  S  +      SL  +    N++   +  E C                 
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW---------------- 473

Query: 507 YLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPD 566
                +F+G ++                               L +L L+HN  +   P 
Sbjct: 474 ----DVFEGLSH-------------------------------LQVLYLNHNYLNSLPPG 498

Query: 567 QISQLTNLERMDLSKNHLS----GEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFP 622
             S LT L  + L+ N L+     ++P +L+ L      +++ N L    P+   F +  
Sbjct: 499 VFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL------DISRNQL--LAPNPDVFVSLS 550

Query: 623 SSSFRGNPDLC 633
                 N  +C
Sbjct: 551 VLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  147 bits (372), Expect = 4e-37
 Identities = 79/424 (18%), Positives = 143/424 (33%), Gaps = 34/424 (8%)

Query: 90  ISLSIGNLTHLSHLNLSHNRLSGEFPSS---LSSNYIKIIDLSSNHFQGKIPSTIFRLTQ 146
           +  S G L  L  ++ S N++          L    +    L++N    ++     +   
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 147 -----NLITFNVSNNSFTGLISWSAWV----------DSFCSIRHLDLSNNRFTGPVPLG 191
                 L   +VS N +T  I+ +                  I       +    P    
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 192 LGS--CSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL 249
                 S ++       ++         T   L+ L+L++N I+         L +L++L
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319

Query: 250 ELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDIS 309
            L  N L  L   +   L  +  + L  N ++     + K    L  L+L+ N       
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT---- 375

Query: 310 VFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEG-QISPGIVALKSLS 368
                 +  +  + L  N       I L    +   ++L+ N+LE   I   ++ +  L 
Sbjct: 376 --TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQ 429

Query: 369 FLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLA 428
            L L+ N  ++ +G  +      +L+ L +  N +              G  +LQVL L 
Sbjct: 430 ILILNQNRFSSCSG-DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488

Query: 429 ECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEF 488
              L    P     L  L+ L L+ N+LT      L   ++L  +D S N +    P  F
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVF 546

Query: 489 CRLP 492
             L 
Sbjct: 547 VSLS 550

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  141 bits (356), Expect = 5e-35
 Identities = 105/549 (19%), Positives = 185/549 (33%), Gaps = 70/549 (12%)

Query: 103 LNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLI 162
                  L+ + P  L++   + + LS N+ +  + ++ F   + L    + +      I
Sbjct: 9   AFYRFCNLT-QVPQVLNT--TERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 163 SWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSL--PDDIYTAT 220
              A+  +  ++R LDL +++     P        L   R  F  L+ ++          
Sbjct: 65  DKEAF-RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 221 SLEQLSLSFNHISG-SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLT--NLESLVLHN 277
           +L +L LS N I    +      L SL+ ++  SN +  +   ++  L    L    L  
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 278 NSLSGSLPSSLKNCIN-LTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPIT 336
           NSL   +      C+N    + L+      D+S         + +    SN  + S   +
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEIL----DVS----GNGWTVDITGNFSNAISKSQAFS 235

Query: 337 LNSCKSLTAVNLARNQLEGQISPGI---VALKSLSFLSLSNNSLTNITGAIRILMGCKNL 393
           L     +       + ++          +A  S+  L LS+  + ++   +         
Sbjct: 236 LILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV--------- 285

Query: 394 KVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSF 453
                   F                 K+L+VL LA  K+          L  LQVL+LS+
Sbjct: 286 --------F--------------ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 454 NQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQD--KNKANESYLEFS 511
           N L          +  + +ID   N I+    + F  L  L    D   N     +   S
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ-TLDLRDNALTTIHFIPS 382

Query: 512 LFK--GSNNFIGEYKKI----LTFHEQYTWKTTASAAVSLLRLL-LHMLDLSHNNFSGNI 564
           +     S N +    KI       H              LLR+  L +L L+ N FS   
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442

Query: 565 PDQI-SQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPS 623
            DQ  S+  +LE++ L +N L       L    F    ++    L  +       ++ P 
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-----YLNSLPP 497

Query: 624 SSFRGNPDL 632
             F     L
Sbjct: 498 GVFSHLTAL 506

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  117 bits (296), Expect = 1e-27
 Identities = 64/340 (18%), Positives = 121/340 (35%), Gaps = 33/340 (9%)

Query: 83  WKGLTGTISLSIGNLTHLSHLNLSHNRLSG---EFPSSLSSNYIKIIDLSSNHFQGKIPS 139
              ++ + + S+    H+       + +        + L+ + ++ +DLS       + S
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNS 283

Query: 140 TIFRLTQNLITFNVSNNSFTGLISWSAWVDSFC---SIRHLDLSNNRFTGPVPLGLGSCS 196
            +F   ++L   N++ N    +       ++F    +++ L+LS N              
Sbjct: 284 RVFETLKDLKVLNLAYNKINKI-----ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338

Query: 197 RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSL 256
           ++       N++             L+ L L  N ++      I  + S+  + L  N L
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL 393

Query: 257 TGLIPRDIGKLTNLESLVLHNNSLSG-SLPSSLKNCINLTLLNLQSNFFEGDISVFNFST 315
             L   ++        + L  N L    +   L    +L +L L  N F         S 
Sbjct: 394 VTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449

Query: 316 LLKLRVLDLGSNLFTGSLPITLNS-----CKSLTAVNLARNQLEGQISPGIVA-LKSLSF 369
              L  L LG N+   +    L          L  + L  N L   + PG+ + L +L  
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRG 508

Query: 370 LSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPD 409
           LSL++N LT ++          NL++L I  N +    PD
Sbjct: 509 LSLNSNRLTVLSHN----DLPANLEILDISRNQLLAPNPD 544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  110 bits (276), Expect = 4e-25
 Identities = 79/396 (19%), Positives = 126/396 (31%), Gaps = 68/396 (17%)

Query: 245 SLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFF 304
             RI      +LT  +P+    L   E L+L  N +     SS      L LL L S + 
Sbjct: 5   DGRIAFYRFCNLTQ-VPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 305 EGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG--IV 362
              I    F  L  LR+LDLGS+      P        L  + L    L   +       
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 363 ALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNL 422
            LK+L+ L LS N + ++           +LK +    N +   + +++        + L
Sbjct: 121 NLKALTRLDLSKNQIRSLYLH-PSFGKLNSLKSIDFSSNQI-FLVCEHE-------LEPL 171

Query: 423 QVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFH------IDFS 476
           Q                    K L    L+ N L   V    G   + F       +D S
Sbjct: 172 Q-------------------GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212

Query: 477 NNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWK 536
            N  + +    F                 S  +      +++ +G       F       
Sbjct: 213 GNGWTVDITGNFSN-------------AISKSQAFSLILAHHIMG-----AGFGFHNIKD 254

Query: 537 TTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLH 596
              +    L R  +  LDLSH             L +L+ ++L+ N ++     +   L 
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314

Query: 597 FLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDL 632
            L   N++ N L              SS+F G P +
Sbjct: 315 NLQVLNLSYNLL----------GELYSSNFYGLPKV 340

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 32/196 (16%), Positives = 58/196 (29%), Gaps = 22/196 (11%)

Query: 95  GNLTHLSHLNLSHNRLSGEFPSSLSSNYI------KIIDLSSNHFQGKIPSTIFRLTQNL 148
                L  L L  N L   + + L  +        +++ L+ N+    +P  +F     L
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTAL 506

Query: 149 ITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYL 208
              ++++N  T L           ++  LD+S N+   P P        L       N  
Sbjct: 507 RGLSLNSNRLTVLSHNDL----PANLEILDISRNQLLAPNP---DVFVSLSVLDITHNKF 559

Query: 209 TGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLT 268
                        L       NH + +I     ++  +        SL  L      +  
Sbjct: 560 ICEC--------ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEE 611

Query: 269 NLESLVLHNNSLSGSL 284
            L+SL      +    
Sbjct: 612 VLKSLKFSLFIVCTVT 627

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  143 bits (362), Expect = 6e-37
 Identities = 62/410 (15%), Positives = 134/410 (32%), Gaps = 30/410 (7%)

Query: 90  ISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNL 148
           I     N        ++ + L     S   S   +K +DLS N       + +   T  L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KL 60

Query: 149 ITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYL 208
              N+S+N     +     ++S  ++R LDL+NN         L     ++T  A  N +
Sbjct: 61  ELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111

Query: 209 TGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRD-IGKL 267
           +  +          + + L+ N I+          + ++ L+L  N +  +   +     
Sbjct: 112 S-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 268 TNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVF--NFSTLLKLRVLDLG 325
             LE L L  N +   +   +     L  L+L SN     ++     F +   +  + L 
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSN----KLAFMGPEFQSAAGVTWISLR 222

Query: 326 SNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIR 385
           +N     +   L   ++L   +L  N      +      K+    +++  ++  +TG  +
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTG--Q 278

Query: 386 ILMGCKNLKVLIIPLNFMDET-MPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLK 444
               C    +        ++   P  DRL +    K   +L     + +  +        
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALK-RKEHALLSGQGSETER-LECERENQA 336

Query: 445 KLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPAL 494
           + + +D    Q    + +      +   ++     +  +          L
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (344), Expect = 2e-34
 Identities = 55/399 (13%), Positives = 123/399 (30%), Gaps = 28/399 (7%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
           ++ +        +   ++ + +  ++ +   +  +++ L+L  N L+ +   D+   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 271 ESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330
           E L L +N L       L++   L  L+L +N+ +             +  L   +N  +
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS 112

Query: 331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGC 390
               ++ +  +    + LA N++             + +L L  N +  +  A  +    
Sbjct: 113 R---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASS 168

Query: 391 KNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLD 450
             L+ L +  NF+ +       +     F  L+ L L+  KL   +         +  + 
Sbjct: 169 DTLEHLNLQYNFIYD-------VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 451 LSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS-GEFPKEFCRLPALTPEQDKNKANESYLE 509
           L  N+L   + + L    +L H D   N    G     F +   +     +     +   
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 510 FSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQIS 569
                                  +     A   ++L R    +L    +     +  +  
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPF-----ADRLIALKRKEHALLSGQGSETE-RLECERE 333

Query: 570 QLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNL 608
                  +D  K      I     R          +  L
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  105 bits (263), Expect = 4e-24
 Identities = 37/311 (11%), Positives = 91/311 (29%), Gaps = 11/311 (3%)

Query: 91  SLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLI 149
            +S        ++ L++N+++          + ++ +DL  N       + +   +  L 
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 150 TFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLT 209
             N+  N    +     +      ++ LDLS+N+    +     S + +       N L 
Sbjct: 173 HLNLQYNFIYDVKGQVVFA----KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227

Query: 210 GSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTN 269
             +   +  + +LE   L  N              + R+  +   ++  L  ++  + T 
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 270 LESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDIS---VFNFSTLLKLRVLDLGS 326
                                 I L          +G  +           + R +D   
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 327 NLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRI 386
             +   +       ++   +   +  L+ Q+S G  A   L            +  A   
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

Query: 387 LMGCKNLKVLI 397
               + L+ ++
Sbjct: 406 QSPLQLLRAIV 416

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.1 bits (226), Expect = 2e-19
 Identities = 49/328 (14%), Positives = 96/328 (29%), Gaps = 79/328 (24%)

Query: 283 SLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKS 342
           ++    +N     +  +  +  +         +   ++ LDL  N  +      L     
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 343 LTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNF 402
           L  +NL+ N L    +  + +L +L  L L+NN +  +                      
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLV-------------------- 97

Query: 403 MDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPR 462
                             +++ L  A   +  +V     + +  + + L+ N++T     
Sbjct: 98  ----------------GPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDL 138

Query: 463 FLGNMSSLFHIDFSNNLISG-EFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIG 521
             G  S + ++D   N I    F +       L                +L     NFI 
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE-------------HLNL---QYNFI- 181

Query: 522 EYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSK 581
                                V   +L    LDLS N  +  +  +      +  + L  
Sbjct: 182 ---------------YDVKGQVVFAKL--KTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 582 NHLSGEIPVSLKRLHFLSAFNVAENNLR 609
           N L   I  +L+    L  F++  N   
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 29/244 (11%), Positives = 60/244 (24%), Gaps = 11/244 (4%)

Query: 89  TISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQN 147
            +     +   ++ ++L +N+L      +L     ++  DL  N F        F   Q 
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 148 LITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNY 207
           +    V+  +   L   +   +                            LK        
Sbjct: 264 V--QTVAKQTVKKLTGQNE--EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLS 319

Query: 208 LTGS----LPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRD 263
             GS    L  +        ++          I    +   +   LE    +L   +   
Sbjct: 320 GQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

Query: 264 IGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLD 323
                 L+  +         L  + +    L LL      +E             +R  D
Sbjct: 380 RRAHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 438

Query: 324 LGSN 327
           +  +
Sbjct: 439 MYQH 442

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 27/203 (13%), Positives = 65/203 (32%), Gaps = 43/203 (21%)

Query: 421 NLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLI 480
             ++  + +  LK  + S       ++ LDLS N L+      L   + L  ++ S+N++
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 481 SGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTAS 540
                 +   L  L                 L   +NN++ E     +            
Sbjct: 71  YE--TLDLESLSTLR-------------TLDL---NNNYVQELLVGPS------------ 100

Query: 541 AAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSA 600
                    +  L  ++NN S  +    S+    + + L+ N ++    +       +  
Sbjct: 101 ---------IETLHAANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 601 FNVAENNLRGSIPSGGQFDTFPS 623
            ++  N +  ++       +  +
Sbjct: 149 LDLKLNEID-TVNFAELAASSDT 170

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (359), Expect = 3e-36
 Identities = 90/552 (16%), Positives = 181/552 (32%), Gaps = 79/552 (14%)

Query: 87  TGTISLSIGNLTH--------LSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKI 137
           +G       + T         +  L+LS N+++      L +   ++++ L S+     I
Sbjct: 7   SGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TI 65

Query: 138 PSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCS 196
               F    +L   ++S+N  + L   S+W     S+++L+L  N +    V     + +
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLSSL--SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 197 RLKTFR-AGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNS 255
            L+T R       +     D    TSL +L +    +       + ++  +  L L+ + 
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 256 LTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNF------------ 303
              L+      L+++  L L + +L+    S L      + +   +              
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 304 -----FEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQIS 358
                +  ++S   F       + D   +       +      ++  +++ +  L   +S
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 359 PGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANG 418
                L+ +  +++ N+ +  +          K+L+ L +  N M E    N        
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPC--SFSQHLKSLEFLDLSENLMVEEYLKNS--ACKGA 359

Query: 419 FKNLQVLGLAECKLK--GQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFS 476
           + +LQ L L++  L+   +    +  LK L  LD+S N     +P        +  ++ S
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS 418

Query: 477 NNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWK 536
           +  I          L  L                     SNN +  +   L         
Sbjct: 419 STGIRVVKTCIPQTLEVL-------------------DVSNNNLDSFSLFLPR------- 452

Query: 537 TTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLH 596
                        L  L +S N     +PD  S    L  M +S+N L         RL 
Sbjct: 453 -------------LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLT 497

Query: 597 FLSAFNVAENNL 608
            L    +  N  
Sbjct: 498 SLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (357), Expect = 6e-36
 Identities = 94/553 (16%), Positives = 172/553 (31%), Gaps = 86/553 (15%)

Query: 103 LNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLI 162
            +      +   PS L++  +K +DLS N     I     R   NL    + ++    + 
Sbjct: 10  CDGRSRSFT-SIPSGLTAA-MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIE 66

Query: 163 SWSAWVDSFC---SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG-SLPDDIYT 218
                 D+F    S+ HLDLS+N  +       G  S LK      N      +      
Sbjct: 67  G-----DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 219 ATSLEQLSLSFNHISGSIKNG-IVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHN 277
            T+L+ L +        I+      LTSL  LE+ + SL     + +  + ++  L LH 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 278 NSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITL 337
           +  +  L        ++  L L+                     +   +   +     + 
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLAR-FQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 338 NSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLI 397
           N    L    L  +++E                  + +    ++   ++      ++ L 
Sbjct: 241 NELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKV--ETVTIRRLH 292

Query: 398 IPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLT 457
           IP  ++   +         +  + ++ + +   K+     S+   LK L+ LDLS N + 
Sbjct: 293 IPQFYLFYDLST-----VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 458 GSV---PRFLGNMSSLFHIDFSNNLIS--GEFPKEFCRLPALTPEQDKNKANESYLEFSL 512
                     G   SL  +  S N +    +  +    L  LT            L+   
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT-----------SLDI-- 394

Query: 513 FKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLT 572
              S N            +   W              +  L+LS       +   I    
Sbjct: 395 ---SRNTFH------PMPDSCQWPEK-----------MRFLNLSSTGIR-VVKTCI--PQ 431

Query: 573 NLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGG-------------QFD 619
            LE +D+S N+L     + L RL  L    ++ N L+ ++P                Q  
Sbjct: 432 TLEVLDVSNNNLD-SFSLFLPRLQEL---YISRNKLK-TLPDASLFPVLLVMKISRNQLK 486

Query: 620 TFPSSSFRGNPDL 632
           + P   F     L
Sbjct: 487 SVPDGIFDRLTSL 499

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  126 bits (319), Expect = 6e-31
 Identities = 76/445 (17%), Positives = 150/445 (33%), Gaps = 42/445 (9%)

Query: 194 SCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS 253
           SC             T S+P  +    +++ L LSFN I+      +    +L++L L S
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNF 313
           + +  +       L +LE L L +N LS    S      +L  LNL  N ++       F
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 314 STLLKLRVLDLGSNLFTGSLP-ITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSL 372
             L  L+ L +G+      +  I      SL  + +    L    S  + +++ +  L+L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 373 SNNSLTNIT-GAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECK 431
             +    +      IL   + L++    L     +    D ++S       +   L +  
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 432 LKG--QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMS--------SLFHIDFSNNLIS 481
                ++  +I +L +++  D + N L    P     +S        ++  +      + 
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299

Query: 482 GEFPKEFCRLPALTPEQDKNKANESYLEFSLFKG---------SNNFIGEYKKILTFHEQ 532
            +    +  L  +        +    +  S  +          S N + E          
Sbjct: 300 YDLSTVYSLLEKVK-RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE----EYLKNS 354

Query: 533 YTWKTTASAAVSLLRLLLHMLDLSHNNFS--GNIPDQISQLTNLERMDLSKNHLSGEIPV 590
                  S         L  L LS N+        + +  L NL  +D+S+N     +P 
Sbjct: 355 ACKGAWPS---------LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD 404

Query: 591 SLKRLHFLSAFNVAENNLRGSIPSG 615
           S +    +   N++   +R  + + 
Sbjct: 405 SCQWPEKMRFLNLSSTGIR-VVKTC 428

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (261), Expect = 1e-23
 Identities = 61/341 (17%), Positives = 107/341 (31%), Gaps = 34/341 (9%)

Query: 77  SHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGK 136
            HL L        + +    L+ + +L L    L+    S L  + +             
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 137 IPS-------TIFRLTQNLITFNVSNNSFTGLISWSAWVDSFC---------SIRHLDLS 180
           +          + R    L      + +  GL  ++                +IR L + 
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 181 NNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNG- 239
                  +        ++K      + +            SLE L LS N +        
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 240 --IVNLTSLRILELYSNSLTGL--IPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLT 295
                  SL+ L L  N L  +      +  L NL SL +  N+    +P S +    + 
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR 413

Query: 296 LLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEG 355
            LNL S      I V        L VLD+ +N    S  + L     L  + ++RN+L+ 
Sbjct: 414 FLNLSSTG----IRVVKTCIPQTLEVLDVSNNNLD-SFSLFL---PRLQELYISRNKLK- 464

Query: 356 QISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVL 396
            +         L  + +S N L ++     I     +L+ +
Sbjct: 465 TLPDA-SLFPVLLVMKISRNQLKSVPD--GIFDRLTSLQKI 502

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 95.9 bits (239), Expect = 6e-21
 Identities = 45/299 (15%), Positives = 99/299 (33%), Gaps = 21/299 (7%)

Query: 14  LKLLHIIIIILSCFSSFCQACNQIDQDSLLSLGFNISSPGLNWSSSTDCCLWEGIKCDAN 73
            +   +     +      +   ++ +        N    GL   + ++  +   +     
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN----GLGDFNPSESDVVSELGKVET 285

Query: 74  GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLS---GEFPSSLSSNYIKIIDLSS 130
             +  L +P   L   +S     L  +  + + ++++      F   L S  ++ +DLS 
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS--LEFLDLSE 343

Query: 131 NHFQ--GKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPV 188
           N         S       +L T  +S N    +      + +  ++  LD+S N F  P+
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PM 402

Query: 189 PLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRI 248
           P       +++        +   +   I    +LE L +S N++     +  + L  L+ 
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ--TLEVLDVSNNNLD----SFSLFLPRLQE 455

Query: 249 LELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGD 307
           L +  N L  L          L  + +  N L            +L  + L +N ++  
Sbjct: 456 LYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.7 bits (150), Expect = 5e-10
 Identities = 42/265 (15%), Positives = 80/265 (30%), Gaps = 44/265 (16%)

Query: 362 VALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKN 421
           ++  +       + S T+I   +        +K L +  N +                 N
Sbjct: 2   LSCDASGVCDGRSRSFTSIPSGL-----TAAMKSLDLSFNKITYIGHG-----DLRACAN 51

Query: 422 LQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481
           LQVL L   ++          L  L+ LDLS N L+     + G +SSL +++   N   
Sbjct: 52  LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

Query: 482 G-EFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTAS 540
                  F  L  L                +L  G+     E ++I              
Sbjct: 112 TLGVTSLFPNLTNLQ---------------TLRIGNVETFSEIRRI-------------- 142

Query: 541 AAVSLLRLL-LHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLS 599
                  L  L+ L++   +        +  + ++  + L  +  +  + +    L  + 
Sbjct: 143 ---DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

Query: 600 AFNVAENNLRGSIPSGGQFDTFPSS 624
              + + NL     S    D   S 
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSP 224

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  134 bits (340), Expect = 1e-34
 Identities = 60/348 (17%), Positives = 131/348 (37%), Gaps = 27/348 (7%)

Query: 136 KIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSC 195
           +       L  + + ++V  +  T  + +     +  + + +   N+         L S 
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 68

Query: 196 SRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYS 253
            +++        +   +    +    ++++L + FN I   +   +  N+  L +L L  
Sbjct: 69  RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLER 126

Query: 254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNF 313
           N L+ L          L +L + NN+L      + +   +L  L L SN     ++  + 
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN----RLTHVDL 182

Query: 314 STLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLS 373
           S +  L   ++  NL +     TL    ++  ++ + N +   +         L+ L L 
Sbjct: 183 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGP--VNVELTILKLQ 234

Query: 374 NNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLK 433
           +N+LT+       L+    L  + +  N + E +  +         + L+ L ++  +L 
Sbjct: 235 HNNLTDTAW----LLNYPGLVEVDLSYNEL-EKIMYH----PFVKMQRLERLYISNNRLV 285

Query: 434 GQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481
             +  +   +  L+VLDLS N L   V R       L ++   +N I 
Sbjct: 286 -ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (315), Expect = 2e-31
 Identities = 74/397 (18%), Positives = 141/397 (35%), Gaps = 84/397 (21%)

Query: 89  TISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNY--IKIIDLSSNHFQGKIPSTIFRLTQ 146
                   L +   +   ++ +  + P++L  ++  +++++L+    + +I +  F    
Sbjct: 36  YFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAH 93

Query: 147 NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFN 206
            +    +  N+   L        +   +  L L  N  +                     
Sbjct: 94  TIQKLYMGFNAIRYLPPHV--FQNVPLLTVLVLERNDLS--------------------- 130

Query: 207 YLTGSLPDDIYTA-TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIG 265
               SLP  I+     L  LS+S N++     +     TSL+ L+L SN LT +   D+ 
Sbjct: 131 ----SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLS 183

Query: 266 KLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLG 325
            + +L    +  N L     S+L   I +  L+   N     I+V      ++L +L L 
Sbjct: 184 LIPSLFHANVSYNLL-----STLAIPIAVEELDASHN----SINVVRGPVNVELTILKLQ 234

Query: 326 SNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI-VALKSLSFLSLSNNSLTNITGAI 384
            N  T      L +   L  V+L+ N+LE +I     V ++ L  L +SNN L  +    
Sbjct: 235 HNNLT-DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYG 291

Query: 385 RILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLK 444
           + +                                  L+VL L+   L   V     +  
Sbjct: 292 QPI--------------------------------PTLKVLDLSHNHLL-HVERNQPQFD 318

Query: 445 KLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481
           +L+ L L  N +  ++   L    +L ++  S+N   
Sbjct: 319 RLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (301), Expect = 2e-29
 Identities = 63/385 (16%), Positives = 121/385 (31%), Gaps = 66/385 (17%)

Query: 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNS 279
            + + ++   + +       + +   + +L L    +  +          ++ L +  N+
Sbjct: 45  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104

Query: 280 LSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS 339
           +    P   +N   LT+L L+ N     +    F    KL  L + +N        T  +
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 340 CKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIP 399
             SL  + L+ N+L   +      + SL   ++S N L+ +   I        ++ L   
Sbjct: 164 TTSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLLSTLAIPI-------AVEELDA- 212

Query: 400 LNFMDETMPDNDRLTS--ANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLT 457
                     ++ +          L +L L    L     +W+     L  +DLS+N+L 
Sbjct: 213 ---------SHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 261

Query: 458 GSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSN 517
             +      M  L  +  SNN +          +P L                 L   S+
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK-------------VLDL---SH 304

Query: 518 NFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERM 577
           N       +L                   R  L  L L HN+    +   +S    L+ +
Sbjct: 305 N------HLLHVER---------NQPQFDR--LENLYLDHNSIV-TLK--LSTHHTLKNL 344

Query: 578 DLSKNHLSG----EIPVSLKRLHFL 598
            LS N         +  ++ R    
Sbjct: 345 TLSHNDWDCNSLRALFRNVARPAVD 369

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (299), Expect = 4e-29
 Identities = 60/406 (14%), Positives = 122/406 (30%), Gaps = 82/406 (20%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
            +  ++        + +             + L + +I+   ++++  L    +     +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 271 ESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330
           E L L++  +      +      +  L +  N     +    F  +  L VL L  N  +
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130

Query: 331 GSLPITLNSCKSLTAVNLARNQLEGQISPGI-VALKSLSFLSLSNNSLTNITGAIRILMG 389
                  ++   LT ++++ N LE +I      A  SL  L LS+N LT++      L  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD-----LSL 184

Query: 390 CKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVL 449
             +L    +  N           L++      ++ L  +   +   V        +L +L
Sbjct: 185 IPSLFHANVSYN----------LLSTLAIPIAVEELDASHNSIN-VVRG--PVNVELTIL 231

Query: 450 DLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLE 509
            L  N LT        N   L  +D S N +                           + 
Sbjct: 232 KLQHNNLT-DTAWL-LNYPGLVEVDLSYNEL-------------------------EKIM 264

Query: 510 FSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQIS 569
           +  F                                    L  L +S+N     +     
Sbjct: 265 YHPFVKMQR-------------------------------LERLYISNNRLV-ALNLYGQ 292

Query: 570 QLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG 615
            +  L+ +DLS NHL   +  +  +   L    +  N++  ++   
Sbjct: 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS 336

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (276), Expect = 3e-26
 Identities = 59/287 (20%), Positives = 107/287 (37%), Gaps = 23/287 (8%)

Query: 95  GNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNV 153
                +  L +  N +    P    +   + ++ L  N     +P  IF  T  L T ++
Sbjct: 90  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM 148

Query: 154 SNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP 213
           SNN+    I    +  +  S+++L LS+NR T    + L     L      +N L+    
Sbjct: 149 SNNNLER-IEDDTF-QATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS---- 199

Query: 214 DDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESL 273
             +    ++E+L  S N I+  ++  +     L IL+L  N+LT      +     L  +
Sbjct: 200 -TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEV 253

Query: 274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSL 333
            L  N L   +         L  L + +N     ++++    +  L+VLDL  N     +
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY-GQPIPTLKVLDLSHNHLL-HV 310

Query: 334 PITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNI 380
                    L  + L  N +   +        +L  L+LS+N     
Sbjct: 311 ERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (272), Expect = 1e-25
 Identities = 55/284 (19%), Positives = 111/284 (39%), Gaps = 27/284 (9%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSSN--YIKIIDLSSNHFQGKIPSTIFRLTQNLITFNV 153
           N+  L+ L L  N LS   P  +  N   +  + +S+N+ + +I    F+ T +L    +
Sbjct: 115 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQL 172

Query: 154 SNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP 213
           S+N  T +           S+ H ++S N  +      L     ++   A  N +   + 
Sbjct: 173 SSNRLTHVDL-----SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR 221

Query: 214 DDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESL 273
             +     L  L L  N+++ +    ++N   L  ++L  N L  ++     K+  LE L
Sbjct: 222 GPVN--VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277

Query: 274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSL 333
            + NN L  +L    +    L +L+L  N     +   N     +L  L L  N      
Sbjct: 278 YISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER-NQPQFDRLENLYLDHNSIV--- 331

Query: 334 PITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSL 377
            + L++  +L  + L+ N      +      ++++  ++ +   
Sbjct: 332 TLKLSTHHTLKNLTLSHNDW--DCNSLRALFRNVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 45/235 (19%), Positives = 88/235 (37%), Gaps = 43/235 (18%)

Query: 91  SLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLIT 150
            + +  +  L H N+S+N LS      ++   ++ +D S N     +   +      L  
Sbjct: 179 HVDLSLIPSLFHANVSYNLLS-TLAIPIA---VEELDASHNSIN-VVRGPVN---VELTI 230

Query: 151 FNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG 210
             + +N+ T      AW+ ++  +  +DLS N                            
Sbjct: 231 LKLQHNNLTDT----AWLLNYPGLVEVDLSYNELE------------------------- 261

Query: 211 SLPDDI-YTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTN 269
            +          LE+L +S N +  ++      + +L++L+L  N L   + R+  +   
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDR 319

Query: 270 LESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDL 324
           LE+L L +NS+  +L  S      L  L L  N ++ +     F  + +  V D 
Sbjct: 320 LENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 43/307 (14%), Positives = 92/307 (29%), Gaps = 38/307 (12%)

Query: 326 SNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIR 385
                  +   L        V++     +       + L +   ++  N+++  +  A  
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA-- 63

Query: 386 ILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKK 445
           +L   + +++L +    + E +       +      +Q L +    ++   P     +  
Sbjct: 64  LLDSFRQVELLNLNDLQI-EEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118

Query: 446 LQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANE 505
           L VL L  N L+        N   L  +  SNN +       F    +L      +    
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ-NLQLSSNRL 177

Query: 506 SYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIP 565
           ++++ SL     +    Y  + T                     +  LD SHN+ +  + 
Sbjct: 178 THVDLSLIPSLFHANVSYNLLSTLAIPIA---------------VEELDASHNSIN-VVR 221

Query: 566 DQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSS 625
             +     L  + L  N+L+ +    L     L   +++ N L                 
Sbjct: 222 GPV--NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELE----------KIMYHP 267

Query: 626 FRGNPDL 632
           F     L
Sbjct: 268 FVKMQRL 274

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  132 bits (333), Expect = 3e-33
 Identities = 89/529 (16%), Positives = 166/529 (31%), Gaps = 110/529 (20%)

Query: 89  TISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSN-YIKIIDLSSNHFQGKIPSTIFRLTQN 147
            + +   N+   +    + +      P        + +  L               L + 
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC------------LDRQ 72

Query: 148 LITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNY 207
                ++N   + L       +    +  L  S N  T  +P    S   L         
Sbjct: 73  AHELELNNLGLSSLP------ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125

Query: 208 LTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKL 267
           L+   P        LE L +S N +   +   + N + L+I+++ +NSL  L        
Sbjct: 126 LSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPD----LP 172

Query: 268 TNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSN 327
            +LE +   NN L   LP  L+N   LT +   +N     +        L L  +  G+N
Sbjct: 173 PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNN----SLKKL-PDLPLSLESIVAGNN 225

Query: 328 LFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRIL 387
           +    LP  L +   LT +    N L+  +        SL  L++ +N LT++    +  
Sbjct: 226 ILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLP---PSLEALNVRDNYLTDLPELPQ-- 277

Query: 388 MGCKNLKVLIIPLNFMDE--------TMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSW 439
                L V     + + E            N+  +  +   +L+ L ++  KL  ++P+ 
Sbjct: 278 -SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL 335

Query: 440 IGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQD 499
             +L++   L  SFN L   VP    N+  L       N +  EFP     +  L     
Sbjct: 336 PPRLER---LIASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLR---- 383

Query: 500 KNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNN 559
                            N+ + E  ++                       L  L +  N 
Sbjct: 384 ----------------MNSHLAEVPELPQN--------------------LKQLHVETNP 407

Query: 560 FSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNL 608
                PD    + +L    ++   +      + +    L       ++ 
Sbjct: 408 LR-EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (314), Expect = 1e-30
 Identities = 78/403 (19%), Positives = 136/403 (33%), Gaps = 64/403 (15%)

Query: 89  TISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNL 148
            +     +L  L   N +   LS + P  L     + + +S+N  + K+P  +   +  L
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALS-DLPPLL-----EYLGVSNNQLE-KLPE-LQNSS-FL 155

Query: 149 ITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYL 208
              +V NNS   L       D   S+  +   NN+      L   +   L    A  N L
Sbjct: 156 KIIDVDNNSLKKLP------DLPPSLEFIAAGNNQLEELPELQ--NLPFLTAIYADNNSL 207

Query: 209 TGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLT 268
              LPD      SLE +    N +       + NL  L  +   +N L  L         
Sbjct: 208 K-KLPDLP---LSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKTLPD----LPP 257

Query: 269 NLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
           +LE+L + +N L+  LP   ++   L +     +                L  L+  SN 
Sbjct: 258 SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS--------ELPPNLYYLNASSNE 308

Query: 329 FTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILM 388
              SL    +   SL  +N++ N+L  ++         L  L  S N L  +        
Sbjct: 309 IR-SLC---DLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLAEVPELP---- 356

Query: 389 GCKNLKVLII---PLNFMDETMPDNDRLTSAN-------GFKNLQVLGLAECKLKGQVPS 438
             +NLK L +   PL    +     + L   +         +NL+ L +    L+ + P 
Sbjct: 357 --QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPD 413

Query: 439 WIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481
               +   + L ++  ++             L    F ++   
Sbjct: 414 IPESV---EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  114 bits (287), Expect = 3e-27
 Identities = 92/521 (17%), Positives = 162/521 (31%), Gaps = 115/521 (22%)

Query: 90  ISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNL 148
           I+    + T L       + L+ E P    +         + + ++   P       +  
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 149 ITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYL 208
           ++  + +                     L+L+N   +  +P        L++  A  N L
Sbjct: 62  VS-RLRDCLDRQA-------------HELELNNLGLS-SLPELPPH---LESLVASCNSL 103

Query: 209 TGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLT 268
           T  LP+   +  SL   + +   +S            L  L + +N L  L   ++   +
Sbjct: 104 T-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLEKLP--ELQNSS 153

Query: 269 NLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
            L+ + + NNSL   LP    +   L  +   +N  E    +     L  L  +   +N 
Sbjct: 154 FLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE---ELPELQNLPFLTAIYADNNS 206

Query: 329 FTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILM 388
               LP    S +S+       N LE    P +  L  L+ +   NN L  +      L 
Sbjct: 207 LK-KLPDLPLSLESI---VAGNNILE--ELPELQNLPFLTTIYADNNLLKTLPDLPPSL- 259

Query: 389 GCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQV 448
             + L V    L  + E              ++L  L ++E      +      L  L  
Sbjct: 260 --EALNVRDNYLTDLPEL------------PQSLTFLDVSENIFS-GLSELPPNLYYL-- 302

Query: 449 LDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYL 508
            + S N++  S+     ++  L   + SNN +  E P    RL  L              
Sbjct: 303 -NASSNEIR-SLCDLPPSLEEL---NVSNNKLI-ELPALPPRLERL------------IA 344

Query: 509 EFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQI 568
                  S N + E  ++                       L  L + +N      PD  
Sbjct: 345 -------SFNHLAEVPELPQN--------------------LKQLHVEYNPLR-EFPDIP 376

Query: 569 SQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR 609
             + +L       N    E+P   + L  L   +V  N LR
Sbjct: 377 ESVEDLR-----MNSHLAEVPELPQNLKQL---HVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.9 bits (247), Expect = 3e-22
 Identities = 73/397 (18%), Positives = 132/397 (33%), Gaps = 71/397 (17%)

Query: 240 IVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNL 299
            V+ T L+    +S++LT + P +   + +        +    + P        + +  L
Sbjct: 7   NVSNTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 300 QSNFFEG----DISVFNFSTL----LKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARN 351
           +          +++    S+L      L  L    N  T  LP    S KSL   N    
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 124

Query: 352 QLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDND 411
            L             L +L +SNN L  +      L     LK++ +  N          
Sbjct: 125 ALSDLPP-------LLEYLGVSNNQLEKLPE----LQNSSFLKIIDVDNN---------- 163

Query: 412 RLTS-ANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSL 470
            L    +   +L+ +     +L+ ++P  +  L  L  +    N L   +P    ++ S+
Sbjct: 164 SLKKLPDLPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLESI 220

Query: 471 FHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFH 530
                 NN++      E   LP LT           Y + +L K   +     + +    
Sbjct: 221 ---VAGNNILE--ELPELQNLPFLT---------TIYADNNLLKTLPDLPPSLEALNVRD 266

Query: 531 EQYTWKTTASAAVSLLRLL-------------LHMLDLSHNNFSGNIPDQISQLTNLERM 577
              T       +++ L +              L+ L+ S N    ++ D    L  L   
Sbjct: 267 NYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SLCDLPPSLEEL--- 322

Query: 578 DLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPS 614
           ++S N L  E+P    RL  L     + N+L   +P 
Sbjct: 323 NVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPE 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  133 bits (337), Expect = 4e-33
 Identities = 64/354 (18%), Positives = 134/354 (37%), Gaps = 27/354 (7%)

Query: 144 LTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRA 203
           L  + + ++V  +  T  + +     +  + + +   N+         L S  +++    
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82

Query: 204 GFNYLTGSLPDDIYT-ATSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYSNSLTGLIP 261
               +   +    +  A ++++L + FN I   +   +  N+  L +L L  N L+ L  
Sbjct: 83  NDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 140

Query: 262 RDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRV 321
                   L +L + NN+L      + +   +L  L L SN     ++  + S +  L  
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN----RLTHVDLSLIPSLFH 196

Query: 322 LDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNIT 381
            ++  NL +     TL    ++  ++ + N +   +         L+ L L +N+LT+  
Sbjct: 197 ANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGP--VNVELTILKLQHNNLTDTA 248

Query: 382 GAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIG 441
                L+    L  + +  N + E +  +         + L+ L ++  +L   +  +  
Sbjct: 249 W----LLNYPGLVEVDLSYNEL-EKIMYH----PFVKMQRLERLYISNNRLV-ALNLYGQ 298

Query: 442 KLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALT 495
            +  L+VLDLS N L   V R       L ++   +N I          L  LT
Sbjct: 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  124 bits (312), Expect = 6e-30
 Identities = 74/394 (18%), Positives = 141/394 (35%), Gaps = 84/394 (21%)

Query: 89  TISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNY--IKIIDLSSNHFQGKIPSTIFRLTQ 146
                   L +   +   ++ +  + P++L  ++  +++++L+    + +I +  F    
Sbjct: 42  YFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAH 99

Query: 147 NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFN 206
            +    +  N+   L        +   +  L L  N  +                     
Sbjct: 100 TIQKLYMGFNAIRYLPPHV--FQNVPLLTVLVLERNDLS--------------------- 136

Query: 207 YLTGSLPDDIYTA-TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIG 265
               SLP  I+     L  LS+S N++     +     TSL+ L+L SN LT +   D+ 
Sbjct: 137 ----SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLS 189

Query: 266 KLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLG 325
            + +L    +  N L     S+L   I +  L+   N     I+V      ++L +L L 
Sbjct: 190 LIPSLFHANVSYNLL-----STLAIPIAVEELDASHN----SINVVRGPVNVELTILKLQ 240

Query: 326 SNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI-VALKSLSFLSLSNNSLTNITGAI 384
            N  T      L +   L  V+L+ N+LE +I     V ++ L  L +SNN L  +    
Sbjct: 241 HNNLT-DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYG 297

Query: 385 RILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLK 444
           + +                                  L+VL L+   L   V     +  
Sbjct: 298 QPI--------------------------------PTLKVLDLSHNHLL-HVERNQPQFD 324

Query: 445 KLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478
           +L+ L L  N +  ++   L    +L ++  S+N
Sbjct: 325 RLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  119 bits (299), Expect = 2e-28
 Identities = 68/424 (16%), Positives = 133/424 (31%), Gaps = 61/424 (14%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
            +  ++        + +             + L + +I+   ++++  L    +     +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 271 ESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330
           E L L++  +      +      +  L +  N     +    F  +  L VL L  N  +
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136

Query: 331 GSLPITLNSCKSLTAVNLARNQLEGQISPGI-VALKSLSFLSLSNNSLTNITGAIRILMG 389
                  ++   LT ++++ N LE +I      A  SL  L LS+N LT++  +      
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLS-----L 190

Query: 390 CKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVL 449
             +L    +  N           L++      ++ L  +   +   V        +L +L
Sbjct: 191 IPSLFHANVSYN----------LLSTLAIPIAVEELDASHNSIN-VVRG--PVNVELTIL 237

Query: 450 DLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLE 509
            L  N LT        N   L  +D S N +       F ++  L               
Sbjct: 238 KLQHNNLT-DTAWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLE-------------R 282

Query: 510 FSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQIS 569
             +   SNN +                   +     +   L +LDLSHN+   ++     
Sbjct: 283 LYI---SNNRL----------------VALNLYGQPIP-TLKVLDLSHNHLL-HVERNQP 321

Query: 570 QLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGN 629
           Q   LE + L  N +   + +S    H L    ++ N+          F      +    
Sbjct: 322 QFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD-CNSLRALFRNVARPAVDDA 377

Query: 630 PDLC 633
              C
Sbjct: 378 DQHC 381

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  109 bits (274), Expect = 3e-25
 Identities = 63/374 (16%), Positives = 129/374 (34%), Gaps = 26/374 (6%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSSN--YIKIIDLSSNHFQGKIPSTIFRLTQNLITFNV 153
           N+  L+ L L  N LS   P  +  N   +  + +S+N+ + +I    F+ T +L    +
Sbjct: 121 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQL 178

Query: 154 SNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP 213
           S+N  T +           S+ H ++S N  +      L     ++   A  N +   + 
Sbjct: 179 SSNRLTHVDL-----SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR 227

Query: 214 DDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESL 273
             +     L  L L  N+++ +    ++N   L  ++L  N L  ++     K+  LE L
Sbjct: 228 GPVN--VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283

Query: 274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSL 333
            + NN L  +L    +    L +L+L  N     +   N     +L  L L  N      
Sbjct: 284 YISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER-NQPQFDRLENLYLDHNSIV--- 337

Query: 334 PITLNSCKSLTAVNLARNQLEG-QISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKN 392
            + L++  +L  + L+ N  +   +      +   +      +   +      +     +
Sbjct: 338 TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESD 397

Query: 393 LKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLS 452
              L   L ++  T        +         +   +             L+  + L+  
Sbjct: 398 KPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAE 457

Query: 453 FNQLTGSVPRFLGN 466
            N+L   V +    
Sbjct: 458 VNELRAEVQQLTNE 471

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 90.0 bits (223), Expect = 5e-19
 Identities = 53/296 (17%), Positives = 100/296 (33%), Gaps = 24/296 (8%)

Query: 91  SLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLIT 150
            + +  +  L H N+S+N LS      ++   ++ +D S N     +   +      L  
Sbjct: 185 HVDLSLIPSLFHANVSYNLLS-TLAIPIA---VEELDASHNSIN-VVRGPVN---VELTI 236

Query: 151 FNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG 210
             + +N+ T      AW+ ++  +  +DLS N     +        RL+      N L  
Sbjct: 237 LKLQHNNLTDT----AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV- 291

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
           +L        +L+ L LS NH+   ++        L  L L  NS+  L    +     L
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTL 347

Query: 271 ESLVLHNNSLSG-SLPSSLKNCINLTLLNLQSN------FFEGDISVFNFSTLLKLRVLD 323
           ++L L +N     SL +  +N     + +   +         G     +    L   +  
Sbjct: 348 KNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQY 407

Query: 324 LGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTN 379
           +        +      C +   +N  ++        G V L+    L    N L  
Sbjct: 408 IALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRA 463

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.8 bits (181), Expect = 6e-14
 Identities = 49/334 (14%), Positives = 111/334 (33%), Gaps = 21/334 (6%)

Query: 288 LKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVN 347
           +       +   Q  +   D ++        + +     +++ G   ITLN+ K +    
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIV---T 57

Query: 348 LARNQLEGQISPGIVA-LKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDET 406
              + +  ++   ++   + +  L+L++  +  I            ++ L +  N +   
Sbjct: 58  FKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDT--YAFAYAHTIQKLYMGFNAI-RY 113

Query: 407 MPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGN 466
           +P +           L VL L    L            KL  L +S N L          
Sbjct: 114 LPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169

Query: 467 MSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFI-----G 521
            +SL ++  S+N ++         L       +        +       S+N I      
Sbjct: 170 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229

Query: 522 EYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSK 581
              ++     Q+   T  +  ++     L  +DLS+N     +     ++  LER+ +S 
Sbjct: 230 VNVELTILKLQHNNLTDTAWLLNYPG--LVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 582 NHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG 615
           N L   + +  + +  L   +++ N+L   +   
Sbjct: 288 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERN 319

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  127 bits (321), Expect = 1e-32
 Identities = 44/271 (16%), Positives = 99/271 (36%), Gaps = 21/271 (7%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
           ++ +        +   ++ + +  ++ +   +  +++ L+L  N L+ +   D+   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 271 ESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330
           E L L +N L       L++   L  L+L +N+ +             +  L   +N  +
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS 112

Query: 331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGC 390
               ++ +  +    + LA N++             + +L L  N +  +  A  +    
Sbjct: 113 R---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASS 168

Query: 391 KNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLD 450
             L+ L +  NF+ +       +     F  L+ L L+  KL   +         +  + 
Sbjct: 169 DTLEHLNLQYNFIYD-------VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 451 LSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481
           L  N+L   + + L    +L H D   N   
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  126 bits (319), Expect = 2e-32
 Identities = 52/295 (17%), Positives = 103/295 (34%), Gaps = 21/295 (7%)

Query: 90  ISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNL 148
           I     N        ++ + L     S   S   +K +DLS N    +I +        L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 149 ITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYL 208
              N+S+N     +     ++S  ++R LDL+NN         L     ++T  A  N +
Sbjct: 61  ELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111

Query: 209 TGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGL-IPRDIGKL 267
           +  +          + + L+ N I+          + ++ L+L  N +  +         
Sbjct: 112 S-RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 268 TNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSN 327
             LE L L  N +   +   +     L  L+L SN     +    F +   +  + L +N
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGP-EFQSAAGVTWISLRNN 224

Query: 328 LFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITG 382
                +   L   ++L   +L  N      +      K+    +++  ++  +TG
Sbjct: 225 KLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTG 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (307), Expect = 9e-31
 Identities = 58/302 (19%), Positives = 113/302 (37%), Gaps = 24/302 (7%)

Query: 196 SRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNS 255
           +R K  +   + L  +L     +A ++++L LS N +S      +   T L +L L SN 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 256 LTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFST 315
           L   +   +  L+ L +L L+NN +       L    ++  L+  +N     IS  + S 
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN----ISRVSCSR 118

Query: 316 LLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA-LKSLSFLSLSN 374
               + + L +N  T    +       +  ++L  N+++      + A   +L  L+L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 375 NSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG 434
           N + ++ G     +    LK L +  N +    P+            +  + L   KL  
Sbjct: 179 NFIYDVKG----QVVFAKLKTLDLSSNKLAFMGPEFQSAA------GVTWISLRNNKLV- 227

Query: 435 QVPSWIGKLKKLQVLDLSFNQLT-GSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPA 493
            +   +   + L+  DL  N    G++  F      +  +            +E C +P 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 494 LT 495
           L 
Sbjct: 288 LG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (273), Expect = 3e-26
 Identities = 51/256 (19%), Positives = 102/256 (39%), Gaps = 17/256 (6%)

Query: 93  SIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152
            +   T L  LNLS N L  E     S + ++ +DL++N+        +     ++ T +
Sbjct: 53  DLAPFTKLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLVGP-SIETLH 105

Query: 153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG-S 211
            +NN+ + +             +++ L+NN+ T    L  G  SR++      N +   +
Sbjct: 106 AANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 212 LPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLE 271
             +   ++ +LE L+L +N I   +K  +     L+ L+L SN L   +  +      + 
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVT 217

Query: 272 SLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG 331
            + L NN L   +  +L+   NL   +L+ N F        FS   +++ +   +     
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 332 SLPITLNSCKSLTAVN 347
                  +  +L    
Sbjct: 277 GQNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.7 bits (231), Expect = 7e-21
 Identities = 47/298 (15%), Positives = 94/298 (31%), Gaps = 54/298 (18%)

Query: 313 FSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSL 372
                + ++  +  +    +L     S  ++  ++L+ N L    +  +     L  L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 373 SNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKL 432
           S+N L         L     L+ L +          +N+ +       +++ L  A   +
Sbjct: 66  SSNVLYETLD----LESLSTLRTLDL----------NNNYVQELLVGPSIETLHAANNNI 111

Query: 433 KGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISG-EFPKEFCRL 491
             +V     + +  + + L+ N++T       G  S + ++D   N I    F +     
Sbjct: 112 S-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 492 PALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLH 551
             L                +L     NFI                      V   +L   
Sbjct: 169 DTLE-------------HLNL---QYNFI----------------YDVKGQVVFAKL--K 194

Query: 552 MLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR 609
            LDLS N  +  +  +      +  + L  N L   I  +L+    L  F++  N   
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 28/220 (12%), Positives = 63/220 (28%), Gaps = 35/220 (15%)

Query: 86  LTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLT 145
           +T    L  G  + + +L+L  N +                 ++               +
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEID---------------TVNFAEL--------AASS 168

Query: 146 QNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGF 205
             L   N+  N    +     +      ++ LDLS+N+    +     S + +       
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFA----KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRN 223

Query: 206 NYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIG 265
           N L   +   +  + +LE   L  N              + R+  +   ++  L      
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKL-TGQNE 280

Query: 266 KLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFE 305
           +   + +L  +       LP+         L+ L  +   
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPF----ADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 30/199 (15%), Positives = 63/199 (31%), Gaps = 24/199 (12%)

Query: 420 KNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNL 479
              ++  + +  LK  + S       ++ LDLS N L+      L   + L  ++ S+N+
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 480 ISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNF--IGEYKKILTFHEQYTWKT 537
           +      +   L  L                +L   +N    +     I T H      +
Sbjct: 70  LYE--TLDLESLSTLR---------------TLDLNNNYVQELLVGPSIETLHAANNNIS 112

Query: 538 TASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSG-EIPVSLKRLH 596
             S   S  +   + + L++N  +          + ++ +DL  N +             
Sbjct: 113 RVSC--SRGQGKKN-IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 597 FLSAFNVAENNLRGSIPSG 615
            L   N+  N +   +   
Sbjct: 170 TLEHLNLQYNFIY-DVKGQ 187

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  128 bits (323), Expect = 9e-32
 Identities = 63/310 (20%), Positives = 113/310 (36%), Gaps = 12/310 (3%)

Query: 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSF 229
               R LDL  NR          S   L+      N ++ ++    +    +L  L L  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 230 NHISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL 288
           N +   I  G+   L++L  L++  N +  L+      L NL+SL + +N L      + 
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148

Query: 289 KNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNL 348
               +L  L L+       I     S L  L VL L           +      L  + +
Sbjct: 149 SGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 349 ARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMP 408
           +       ++P  +   +L+ LS+++ +LT +      +     L+ L +  N +     
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY--LAVRHLVYLRFLNLSYNPISTIEG 265

Query: 409 DNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMS 468
                   +    LQ + L   +L    P     L  L+VL++S NQLT        ++ 
Sbjct: 266 S-----MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 469 SLFHIDFSNN 478
           +L  +   +N
Sbjct: 321 NLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  120 bits (304), Expect = 2e-29
 Identities = 67/286 (23%), Positives = 102/286 (35%), Gaps = 12/286 (4%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
           ++P+ I   T    L L  N I    ++   +   L  LEL  N ++ + P     L NL
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 271 ESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330
            +L L +N L            NLT L++  N     +  + F  L  L+ L++G N   
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 331 GSLPITLNSCKSLTAVNLARNQLEGQISPGI-VALKSLSFLSLSNNSLTNITGAIRILMG 389
                  +   SL  + L +  L   I       L  L  L L + ++  I         
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRD--YSFKR 198

Query: 390 CKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVL 449
              LKVL I      +TM  N          NL  L +  C L       +  L  L+ L
Sbjct: 199 LYRLKVLEISHWPYLDTMTPN-----CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253

Query: 450 DLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALT 495
           +LS+N ++      L  +  L  I      ++   P  F  L  L 
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (294), Expect = 5e-28
 Identities = 64/326 (19%), Positives = 113/326 (34%), Gaps = 33/326 (10%)

Query: 75  RVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQ 134
               L L    +         +  HL  L L+ N +S                +    F 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS---------------AVEPGAFN 77

Query: 135 GKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGS 194
                    L  N +   +    FTGL           ++  LD+S N+    +      
Sbjct: 78  NLFNLRTLGLRSNRLK-LIPLGVFTGLS----------NLTKLDISENKIVILLDYMFQD 126

Query: 195 CSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS 253
              LK+   G N L   +    ++   SLEQL+L   +++      + +L  L +L L  
Sbjct: 127 LYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185

Query: 254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNF 313
            ++  +      +L  L+ L + +     ++  +    +NLT L++        +     
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAV 244

Query: 314 STLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI-VALKSLSFLSL 372
             L+ LR L+L  N  +      L+    L  + L   QL   + P     L  L  L++
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNV 303

Query: 373 SNNSLTNITGAIRILMGCKNLKVLII 398
           S N LT +     +     NL+ LI+
Sbjct: 304 SGNQLTTLEE--SVFHSVGNLETLIL 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (273), Expect = 2e-25
 Identities = 56/270 (20%), Positives = 96/270 (35%), Gaps = 27/270 (10%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSSNY--IKIIDLSSNHFQGKIPSTIFR---------L 144
           NL +L  L L  NRL    P  + +    +  +D+S N     +   +F+         +
Sbjct: 78  NLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEV 135

Query: 145 TQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAG 204
             N +   +S+ +F+GL S          +  L L     T      L     L   R  
Sbjct: 136 GDNDLV-YISHRAFSGLNS----------LEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 205 FNYLTGSLPDDIYTA-TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRD 263
              +  ++ D  +     L+ L +S      ++    +   +L  L +   +LT +    
Sbjct: 185 HLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243

Query: 264 IGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLD 323
           +  L  L  L L  N +S    S L   + L  + L        +  + F  L  LRVL+
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLN 302

Query: 324 LGSNLFTGSLPITLNSCKSLTAVNLARNQL 353
           +  N  T       +S  +L  + L  N L
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.5 bits (225), Expect = 2e-19
 Identities = 59/345 (17%), Positives = 105/345 (30%), Gaps = 70/345 (20%)

Query: 272 SLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG 331
           +++ H      ++P  +       LL+L  N  +  ++   F++   L  L+L  N+ + 
Sbjct: 15  AVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA 70

Query: 332 SLPITLNSCKSLTAVNLARNQLEGQISPGI-VALKSLSFLSLSNNSLTNITGAIRILMGC 390
             P   N+  +L  + L  N+L+  I  G+   L +L+ L +S N +  +          
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILL--------- 120

Query: 391 KNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLD 450
                      F                  NL+ L + +  L          L  L+ L 
Sbjct: 121 --------DYMF--------------QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158

Query: 451 LSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEF 510
           L    LT      L ++  L  +   +  I+      F RL  L                
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK--------------- 203

Query: 511 SLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQ 570
            L      ++                        L  L L  L ++H N +      +  
Sbjct: 204 VLEISHWPYL-----------------DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246

Query: 571 LTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG 615
           L  L  ++LS N +S      L  L  L    +    L   +   
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPY 290

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 34/187 (18%), Positives = 72/187 (38%), Gaps = 4/187 (2%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSSNY-IKIIDLSSNHFQGKIPSTIFRLTQNLITFNVS 154
            L  L  L L    L+     +LS  + + ++ L   +    I    F+    L    +S
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEIS 208

Query: 155 NNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPD 214
           +  +   ++ +       ++  L +++   T    L +     L+     +N ++     
Sbjct: 209 HWPYLDTMTPNCLYG--LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

Query: 215 DIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLV 274
            ++    L+++ L    ++         L  LR+L +  N LT L       + NLE+L+
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326

Query: 275 LHNNSLS 281
           L +N L+
Sbjct: 327 LDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 46/277 (16%), Positives = 77/277 (27%), Gaps = 56/277 (20%)

Query: 370 LSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAE 429
           +         +   I         ++L +  N +     D         F +L+ L L E
Sbjct: 16  VLCHRKRFVAVPEGI-----PTETRLLDLGKNRIKTLNQD-----EFASFPHLEELELNE 65

Query: 430 CKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFC 489
             +    P     L  L+ L L  N+L          +S+L  +D S N I       F 
Sbjct: 66  NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125

Query: 490 RLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLL 549
            L  L             LE       +N +                 +  A   L  L 
Sbjct: 126 DLYNLK-----------SLEVG-----DNDLVY--------------ISHRAFSGLNSL- 154

Query: 550 LHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR 609
              L L   N +    + +S L  L  + L   +++     S KRL+ L    ++     
Sbjct: 155 -EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 610 GSIP--------------SGGQFDTFPSSSFRGNPDL 632
            ++               +       P  + R    L
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  129 bits (326), Expect = 1e-31
 Identities = 79/385 (20%), Positives = 135/385 (35%), Gaps = 51/385 (13%)

Query: 78  HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKI 137
            L +   GLT   +L      H++ L +  N L+   P+      ++ +++S N     +
Sbjct: 44  VLNVGESGLT---TLPDCLPAHITTLVIPDNNLT-SLPALPPE--LRTLEVSGNQLT-SL 96

Query: 138 PSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSR 197
           P     L   L  F+        L S          +  L +  N+ T  +P+       
Sbjct: 97  PVLPPGLL-ELSIFSNPLTHLPALPS---------GLCKLWIFGNQLTS-LPVLPPG--- 142

Query: 198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLT 257
           L+      N L  SLP      + L +L    N ++ S+      L  L    +  N L 
Sbjct: 143 LQELSVSDNQLA-SLPALP---SELCKLWAYNNQLT-SLPMLPSGLQELS---VSDNQLA 194

Query: 258 GLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLL 317
            L P    +L  L     +NN L+ SLP+       L +   +        S        
Sbjct: 195 SL-PTLPSELYKLW---AYNNRLT-SLPALPSGLKELIVSGNRLTSLPVLPS-------- 241

Query: 318 KLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSL 377
           +L+ L +  N  T SLP+  +   SL   ++ RNQL  ++   ++ L S + ++L  N L
Sbjct: 242 ELKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

Query: 378 TNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVP 437
           +  T  ++ L    +      P+   D       R T A        L  A         
Sbjct: 297 SERT--LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPAD 354

Query: 438 SW--IGKLKKLQVLDLSFNQLTGSV 460
            W   G+        L  ++L+ + 
Sbjct: 355 RWHMFGQEDNADAFSLFLDRLSETE 379

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  120 bits (303), Expect = 8e-29
 Identities = 75/342 (21%), Positives = 112/342 (32%), Gaps = 58/342 (16%)

Query: 144 LTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRA 203
           L       NV  +  T L            I  L + +N  T  +P        L+T   
Sbjct: 38  LNNGNAVLNVGESGLTTLPD-----CLPAHITTLVIPDNNLTS-LPALPPE---LRTLEV 88

Query: 204 GFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRD 263
             N LT SLP        L   S    H+           + L  L ++ N LT L P  
Sbjct: 89  SGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSL-PVL 139

Query: 264 IGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLD 323
                 L+ L + +N L+ SLP+       L   N Q        S         L+ L 
Sbjct: 140 PP---GLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPS--------GLQELS 187

Query: 324 LGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGA 383
           +  N    SLP   +    L A N     L    S        L  L +S N LT++   
Sbjct: 188 VSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPS-------GLKELIVSGNRLTSLPVL 239

Query: 384 IRILMGCKNLKVLIIPLNFMDETMPDNDRLTS-ANGFKNLQVLGLAECKLKGQVPSWIGK 442
                    LK L++            +RLTS       L  L +   +L  ++P  +  
Sbjct: 240 PS------ELKELMV----------SGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIH 282

Query: 443 LKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEF 484
           L     ++L  N L+    + L  ++S     +S  +I  + 
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSA--PGYSGPIIRFDM 322

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (280), Expect = 5e-26
 Identities = 66/379 (17%), Positives = 123/379 (32%), Gaps = 108/379 (28%)

Query: 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNS 279
                L++  + ++ ++ + +     +  L +  N+LT L P    +L  LE   +  N 
Sbjct: 40  NGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLTSL-PALPPELRTLE---VSGNQ 92

Query: 280 LSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS 339
           L+ SLP      + L++ +          S         L  L +  N  T SLP+    
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLT-SLPVLPPG 142

Query: 340 CKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIP 399
            + L   +++ NQL   +      L  L      NN LT++                   
Sbjct: 143 LQEL---SVSDNQLA-SLPALPSELCKLW---AYNNQLTSL------------------- 176

Query: 400 LNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGS 459
                   P             LQ L +++ +L   +P+   +L KL   +   N+LT S
Sbjct: 177 --------PML--------PSGLQELSVSDNQLA-SLPTLPSELYKLWAYN---NRLT-S 215

Query: 460 VPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNF 519
           +P     +  L     S N ++   P     L  L             +       S N 
Sbjct: 216 LPALPSGLKEL---IVSGNRLT-SLPVLPSELKEL------------MV-------SGNR 252

Query: 520 IGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDL 579
           +     + +                     L  L +  N  +  +P+ +  L++   ++L
Sbjct: 253 LTSLPMLPSG--------------------LLSLSVYRNQLT-RLPESLIHLSSETTVNL 291

Query: 580 SKNHLSGEIPVSLKRLHFL 598
             N LS     +L+ +   
Sbjct: 292 EGNPLSERTLQALREITSA 310

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.3 bits (242), Expect = 3e-21
 Identities = 72/368 (19%), Positives = 119/368 (32%), Gaps = 110/368 (29%)

Query: 243 LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN 302
                +L +  + LT L P  +    ++ +LV+ +N+L+ SLP+                
Sbjct: 39  NNGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLT-SLPALPPE------------ 82

Query: 303 FFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIV 362
                           LR L++  N  T SLP+       L+  +     L    S    
Sbjct: 83  ----------------LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS---- 121

Query: 363 ALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTS-ANGFKN 421
               L  L +  N LT++            L+ L +  N          +L S       
Sbjct: 122 ---GLCKLWIFGNQLTSLPVLPP------GLQELSVSDN----------QLASLPALPSE 162

Query: 422 LQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481
           L  L     +L   +P     L++L    +S NQL  S+P     +  L      NN ++
Sbjct: 163 LCKLWAYNNQLT-SLPMLPSGLQEL---SVSDNQLA-SLPTLPSELYKL---WAYNNRLT 214

Query: 482 GEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASA 541
              P     L  L             +       S N +                T+   
Sbjct: 215 -SLPALPSGLKEL------------IV-------SGNRL----------------TSLPV 238

Query: 542 AVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAF 601
             S L+     L +S N  + ++P   S L +L    + +N L+  +P SL  L   +  
Sbjct: 239 LPSELK----ELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTV 289

Query: 602 NVAENNLR 609
           N+  N L 
Sbjct: 290 NLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 50/277 (18%), Positives = 84/277 (30%), Gaps = 79/277 (28%)

Query: 340 CKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIP 399
                 +N+  + L   +   +     ++ L + +N+LT++            L+ L + 
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLTSLPALP------PELRTLEVS 89

Query: 400 LNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGS 459
            N +  ++P         G   L +       L             L  L +  NQLT S
Sbjct: 90  GNQL-TSLPV-----LPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-S 135

Query: 460 VPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNF 519
           +P     +  L     S+N ++   P     L  L                      NN 
Sbjct: 136 LPVLPPGLQEL---SVSDNQLA-SLPALPSELCKLW-------------------AYNNQ 172

Query: 520 IGEYKKILTFHEQYTWKTTASAAVSLLRLL--LHMLDLSHNNFSGNIPDQISQLTNLERM 577
           +                       SL  L   L  L +S N  + ++P   S+L  L   
Sbjct: 173 L----------------------TSLPMLPSGLQELSVSDNQLA-SLPTLPSELYKLW-- 207

Query: 578 DLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPS 614
               N L+  +P     L  L    V+ N L  S+P 
Sbjct: 208 -AYNNRLT-SLPALPSGLKEL---IVSGNRLT-SLPV 238

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.8 bits (142), Expect = 3e-09
 Identities = 40/199 (20%), Positives = 67/199 (33%), Gaps = 42/199 (21%)

Query: 420 KNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNL 479
               VL + E  L   +P  +     +  L +  N LT S+P     + +L   + S N 
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTL---EVSGNQ 92

Query: 480 ISGEFPKEFCRLPALTPEQDKNKANE-SYLEFSLFK--GSNNFIGEYKKILTFHEQYTWK 536
           ++   P     L  L+     N       L   L K     N +     +          
Sbjct: 93  LT-SLPVLPPGLLELS--IFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG------- 142

Query: 537 TTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLH 596
                        L  L +S N  + ++P   S+L  L       N L+  +P+    L 
Sbjct: 143 -------------LQELSVSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPSGLQ 184

Query: 597 FLSAFNVAENNLRGSIPSG 615
            L   +V++N L  S+P+ 
Sbjct: 185 EL---SVSDNQLA-SLPTL 199

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  121 bits (305), Expect = 2e-30
 Identities = 55/336 (16%), Positives = 103/336 (30%), Gaps = 57/336 (16%)

Query: 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHI 232
              +L    +    P    L    R         +      +      + +  + +   +
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTGRAL 68

Query: 233 SGSIKN-GIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNC 291
             +              LEL S  L    P    +L++L+ + +    L   LP +++  
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 292 INLTLLNLQSNFFEGDISVF--NFSTLLKLRVLDLGSNLFTGSLPITLNSC--------- 340
             L  L L  N     +     + ++L +LR L + +      LP  L S          
Sbjct: 127 AGLETLTLARN----PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 341 KSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPL 400
            +L ++ L    +   +   I  L++L  L + N+ L+ +  AI  L             
Sbjct: 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHL------------- 228

Query: 401 NFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLS-FNQLTGS 459
                                L+ L L  C      P   G    L+ L L   + L  +
Sbjct: 229 -------------------PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-T 268

Query: 460 VPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALT 495
           +P  +  ++ L  +D    +     P    +LPA  
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  117 bits (296), Expect = 3e-29
 Identities = 54/385 (14%), Positives = 102/385 (26%), Gaps = 81/385 (21%)

Query: 210 GSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTN 269
           GS     + ++  E L    +       + +         +                  N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 270 LESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF 329
            +       +L  +    L++                        T      L+L S   
Sbjct: 58  PQIETRTGRALK-ATADLLEDA-----------------------TQPGRVALELRSVPL 93

Query: 330 TGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMG 389
               P        L  + +    L  ++   +     L  L+L+ N L  +  +I     
Sbjct: 94  P-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIA---S 148

Query: 390 CKNLKVLIIPLNFMDETMPDN----DRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKK 445
              L+ L I        +P+     D      G  NLQ L L    ++  +P+ I  L+ 
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN 207

Query: 446 LQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANE 505
           L+ L +  + L+ ++   + ++  L  +D         +P  F     L           
Sbjct: 208 LKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK---------- 256

Query: 506 SYLEFSLFKGSN-----NFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNF 560
                 L   SN       I    +                        L  LDL     
Sbjct: 257 ---RLILKDCSNLLTLPLDIHRLTQ------------------------LEKLDLRGCVN 289

Query: 561 SGNIPDQISQLTNLERMDLSKNHLS 585
              +P  I+QL     + +  +  +
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (294), Expect = 6e-29
 Identities = 56/403 (13%), Positives = 107/403 (26%), Gaps = 83/403 (20%)

Query: 93  SIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152
              + +   +L    +     +   LS    +     +        +     + N     
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLS----QWQRHYNADRNRWHSAWRQANSNNPQIET 62

Query: 153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSL 212
            +  +            +      L+L +                               
Sbjct: 63  RTGRALKATAD-LLEDATQPGRVALELRSVPLP-------------------------QF 96

Query: 213 PDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLES 272
           PD  +  + L+ +++    +   + + +     L  L L  N L  L P  I  L  L  
Sbjct: 97  PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRE 154

Query: 273 LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGS 332
           L +        LP  L +                         L+ L+ L L       S
Sbjct: 155 LSIRACPELTELPEPLASTDASG----------------EHQGLVNLQSLRLEWTGIR-S 197

Query: 333 LPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLS-NNSLTNITGAIRILMGCK 391
           LP ++ + ++L ++ +  + L   + P I  L  L  L L    +L N            
Sbjct: 198 LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR---- 252

Query: 392 NLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDL 451
                                         L+ L L +C     +P  I +L +L+ LDL
Sbjct: 253 ----------------------------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 452 SFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPAL 494
                   +P  +  + +   I    +L +          PA 
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (278), Expect = 7e-27
 Identities = 55/385 (14%), Positives = 103/385 (26%), Gaps = 72/385 (18%)

Query: 234 GSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCIN 293
           GS  +   + +    L    ++    +      L+  +     + +          N  N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTA---LRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNN 57

Query: 294 LTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL 353
             +        +    +   +T      L+L S       P        L  + +    L
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

Query: 354 EGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDN--- 410
             ++   +     L  L+L+ N L  +  +I        L+ L I        +P+    
Sbjct: 117 M-ELPDTMQQFAGLETLTLARNPLRALPASIA---SLNRLRELSIRACPELTELPEPLAS 172

Query: 411 -DRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSS 469
            D      G  NLQ L L    ++  +P+ I  L+ L+ L +  + L+            
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS------------ 219

Query: 470 LFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTF 529
                                LP L                 L       +         
Sbjct: 220 -------------ALGPAIHHLPKLE---------------ELDLRGCTAL--------- 242

Query: 530 HEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIP 589
                              L   L L   +    +P  I +LT LE++DL        +P
Sbjct: 243 -------RNYPPIFGGRAPLKR-LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

Query: 590 VSLKRLHFLSAFNVAENNLRGSIPS 614
             + +L       V   +L+  +  
Sbjct: 295 SLIAQLPANCIILV-PPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (273), Expect = 3e-26
 Identities = 45/261 (17%), Positives = 91/261 (34%), Gaps = 23/261 (8%)

Query: 91  SLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLI 149
            L          L L    L  +FP      ++++ + + +     ++P T+ +    L 
Sbjct: 74  LLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA-GLE 130

Query: 150 TFNVSNNSFTGLISWSAWVDSFCSIRHLDLS-NNRFT--------GPVPLGLGSCSRLKT 200
           T  ++ N    L    A + S   +R L +      T                    L++
Sbjct: 131 TLTLARNPLRAL---PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 201 FRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLI 260
            R  +  +  SLP  I    +L+ L +  + +S ++   I +L  L  L+L   +     
Sbjct: 188 LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNY 245

Query: 261 PRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVF--NFSTLLK 318
           P   G    L+ L+L + S   +LP  +     L  L+L+      ++S      + L  
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC---VNLSRLPSLIAQLPA 302

Query: 319 LRVLDLGSNLFTGSLPITLNS 339
             ++ +  +L          +
Sbjct: 303 NCIILVPPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.2 bits (170), Expect = 7e-13
 Identities = 33/216 (15%), Positives = 57/216 (26%), Gaps = 78/216 (36%)

Query: 89  TISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNL 148
             S     L +L  L L    +                          +P++I  L    
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR------------------------SLPASIANLQ--- 206

Query: 149 ITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYL 208
                                   +++ L + N+  +                       
Sbjct: 207 ------------------------NLKSLKIRNSPLS----------------------- 219

Query: 209 TGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS-NSLTGLIPRDIGKL 267
             +L   I+    LE+L L       +          L+ L L   ++L  L P DI +L
Sbjct: 220 --ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRL 276

Query: 268 TNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNF 303
           T LE L L        LPS +       ++ +  + 
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  116 bits (292), Expect = 9e-29
 Identities = 70/334 (20%), Positives = 113/334 (33%), Gaps = 52/334 (15%)

Query: 172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH 231
           C +R +  S+                              +P D+        L L  N 
Sbjct: 31  CHLRVVQCSDLGLE-------------------------KVPKDL--PPDTALLDLQNNK 63

Query: 232 ISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNC 291
           I+        NL +L  L L +N ++ + P     L  LE L L  N L   LP  +   
Sbjct: 64  ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK- 121

Query: 292 INLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSL--PITLNSCKSLTAVNLA 349
             L  L +  N     +    F+ L ++ V++LG+N    S          K L+ + +A
Sbjct: 122 -TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 350 RNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPD 409
              +   I  G     SL+ L L  N +T +      L G  NL  L +  N +      
Sbjct: 180 DTNIT-TIPQG--LPPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 410 NDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG------SVPRF 463
                S     +L+ L L   KL  +VP  +   K +QV+ L  N ++         P +
Sbjct: 235 -----SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288

Query: 464 LGNMSSLFHIDFSNNLISGEF--PKEFCRLPALT 495
               +S   +   +N +      P  F  +    
Sbjct: 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  106 bits (267), Expect = 2e-25
 Identities = 55/291 (18%), Positives = 105/291 (36%), Gaps = 26/291 (8%)

Query: 98  THLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNN 156
              + L+L +N+++        +   +  + L +N    KI    F     L    +S N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 157 SFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLT-GSLPDD 215
               L           +++ L +  N  T          +++     G N L    + + 
Sbjct: 111 QLKELPE-----KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 216 IYTA-TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLV 274
            +     L  + ++  +I+ +I  G+    SL  L L  N +T +    +  L NL  L 
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 275 LHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVF--NFSTLLKLRVLDLGSNLFTG- 331
           L  NS+S     SL N  +L  L+L +N     +       +    ++V+ L +N  +  
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNN----KLVKVPGGLADHKYIQVVYLHNNNISAI 278

Query: 332 -----SLPITLNSCKSLTAVNLARNQLE-GQISPGI-VALKSLSFLSLSNN 375
                  P       S + V+L  N ++  +I P     +   + + L N 
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (251), Expect = 3e-23
 Identities = 58/363 (15%), Positives = 121/363 (33%), Gaps = 72/363 (19%)

Query: 99  HLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSF 158
           HL  +  S   L  + P  L  +   ++DL +N                     + +  F
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPD-TALLDLQNNKIT-----------------EIKDGDF 72

Query: 159 TGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYT 218
             L           ++  L L NN+ +   P       +L+      N L   LP+    
Sbjct: 73  KNL----------KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK--M 119

Query: 219 ATSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYSNSLT--GLIPRDIGKLTNLESLVL 275
             +L++L +  N I+  ++  +   L  + ++EL +N L   G+       +  L  + +
Sbjct: 120 PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 276 HNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPI 335
            + +++ ++P  L    +LT L+L  N     +   +   L  L  L L  N  +     
Sbjct: 179 ADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 336 TLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGA----IRILMGCK 391
           +L +   L  ++L  N+L  ++  G+   K +  + L NN+++ I               
Sbjct: 235 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 392 NLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDL 451
           +   + +  N                    +Q   +     +         +     + L
Sbjct: 294 SYSGVSLFSN-------------------PVQYWEIQPSTFRC--------VYVRAAVQL 326

Query: 452 SFN 454
              
Sbjct: 327 GNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 48/246 (19%), Positives = 89/246 (36%), Gaps = 39/246 (15%)

Query: 91  SLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQ-GKIPSTIFRLTQNL 148
            L       L  L +  N ++    S  +  N + +++L +N  +   I +  F+  + L
Sbjct: 114 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173

Query: 149 ITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYL 208
               +++ + T +           S+  L L  N+ T    +   S   L          
Sbjct: 174 SYIRIADTNITTIPQ-----GLPPSLTELHLDGNKITK---VDAASLKGL---------- 215

Query: 209 TGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLT 268
                       +L +L LSFN IS      + N   LR L L +N L   +P  +    
Sbjct: 216 -----------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 263

Query: 269 NLESLVLHNNSLSG------SLPSSLKNCINLTLLNLQSNFFE-GDISVFNFSTLLKLRV 321
            ++ + LHNN++S         P       + + ++L SN  +  +I    F  +     
Sbjct: 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 322 LDLGSN 327
           + LG+ 
Sbjct: 324 VQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.6 bits (202), Expect = 5e-17
 Identities = 66/348 (18%), Positives = 114/348 (32%), Gaps = 80/348 (22%)

Query: 245 SLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFF 304
            LR+++     L   +P+D+    +   L L NN ++       KN  NL  L L +N  
Sbjct: 32  HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 305 EGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI-VA 363
              IS   F+ L+KL  L L  N     LP  +   K+L  + +  N++  ++   +   
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNG 143

Query: 364 LKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQ 423
           L  +  + L  N L +                 I    F               G K L 
Sbjct: 144 LNQMIVVELGTNPLKSSG---------------IENGAF--------------QGMKKLS 174

Query: 424 VLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGE 483
            + +A+  +   +P   G    L  L L  N++T      L  +++L  +  S N IS  
Sbjct: 175 YIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231

Query: 484 FPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAV 543
                   P L              E  L   +NN +                      +
Sbjct: 232 DNGSLANTPHLR-------------ELHL---NNNKL----------------VKVPGGL 259

Query: 544 SLLRLLLHMLDLSHNNFSG------NIPDQISQLTNLERMDLSKNHLS 585
           +  + +   + L +NN S         P   ++  +   + L  N + 
Sbjct: 260 ADHKYIQV-VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 64/349 (18%), Positives = 113/349 (32%), Gaps = 101/349 (28%)

Query: 269 NLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
           +L  +   +  L   +P  L    +  LL+LQ+N    +I   +F  L  L  L L +N 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK 87

Query: 329 FTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILM 388
            +   P        L  + L++NQL+ ++       K+L  L +  N +T +        
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLK-ELPEK--MPKTLQELRVHENEITKVR------- 137

Query: 389 GCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQV--PSWIGKLKKL 446
                        F              NG   + V+ L    LK           +KKL
Sbjct: 138 ----------KSVF--------------NGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173

Query: 447 QVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANES 506
             + ++   +T ++P+  G   SL  +    N I+                         
Sbjct: 174 SYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT------------------------- 205

Query: 507 YLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPD 566
            ++ +  KG NN                               L  L LS N+ S     
Sbjct: 206 KVDAASLKGLNN-------------------------------LAKLGLSFNSISAVDNG 234

Query: 567 QISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG 615
            ++   +L  + L+ N L  ++P  L    ++    +  NN+  +I S 
Sbjct: 235 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSN 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 29/123 (23%)

Query: 78  HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSN-YIKIIDLSSNHFQGK 136
            L L +  ++   + S+ N  HL  L+L++N+L  + P  L+ + YI+++ L +N+    
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-A 277

Query: 137 IPSTIF---------------RLTQNLITF-NVSNNSFTGLISWSAWVDSFCSIRHLDLS 180
           I S  F                L  N + +  +  ++F  +               + L 
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV----------RAAVQLG 327

Query: 181 NNR 183
           N +
Sbjct: 328 NYK 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  117 bits (294), Expect = 3e-28
 Identities = 76/422 (18%), Positives = 136/422 (32%), Gaps = 74/422 (17%)

Query: 85  GLTGTISLSIGNLTHLSHLNLSHNRLS-----GEFPS----SLSSNYIKIIDLSSNHFQG 135
            +  T ++S   L  L+ L+  ++ ++      +         +SN I  +DLS N    
Sbjct: 29  EMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQN---- 84

Query: 136 KIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSC 195
                      NL      +N  T L      V     + +L+   N+ T    L +   
Sbjct: 85  ----------TNLTYLACDSNKLTNLD-----VTPLTKLTYLNCDTNKLT---KLDVSQN 126

Query: 196 SRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNS 255
             L       N LT  +  D+   T L +L    N     +   +   T L  L+   N 
Sbjct: 127 PLLTYLNCARNTLT-EI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181

Query: 256 LTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFST 315
           +T L   D+ +   L  L    N+++  L   L   I LT L+  SN     ++  + + 
Sbjct: 182 ITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSN----KLTEIDVTP 231

Query: 316 LLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNN 375
           L +L   D   N  T    + +++   LT ++  +  L          L           
Sbjct: 232 LTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKI 288

Query: 376 SLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTS--ANGFKNLQVLGLAECKLK 433
              ++T           L +L                +T    +    L  L L   +L 
Sbjct: 289 KELDVT-------HNTQLYLLDCQAA----------GITELDLSQNPKLVYLYLNNTELT 331

Query: 434 GQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPA 493
            ++   +    KL+ L      +       +G + +L +   +        PKE     +
Sbjct: 332 -ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI-TMPKETLTNNS 385

Query: 494 LT 495
           LT
Sbjct: 386 LT 387

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  104 bits (262), Expect = 4e-24
 Identities = 71/393 (18%), Positives = 126/393 (32%), Gaps = 76/393 (19%)

Query: 91  SLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLIT 150
           +L +   T+L++L    N+L+              +D++                  L  
Sbjct: 78  TLDLSQNTNLTYLACDSNKLTN-------------LDVTPL--------------TKLTY 110

Query: 151 FNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG 210
            N   N  T L      V     + +L+ + N  T    + +   ++L       N    
Sbjct: 111 LNCDTNKLTKLD-----VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKIT 162

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
            L  D+   T L  L  SFN I+      +     L  L   +N++T L   D+ +   L
Sbjct: 163 KL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQL 214

Query: 271 ESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330
             L   +N L+  +   +     LT  +   N     ++  + STL KL  L        
Sbjct: 215 TFLDCSSNKLT-EID--VTPLTQLTYFDCSVN----PLTELDVSTLSKLTTLHCIQTDLL 267

Query: 331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGC 390
               I L     L        +   ++   +     L  L      +T +      L   
Sbjct: 268 E---IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITELD-----LSQN 317

Query: 391 KNLKVLIIPLNFMDETMPDNDRLTS--ANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQV 448
             L  L +          +N  LT    +    L+ L      ++    S +GK+  L  
Sbjct: 318 PKLVYLYL----------NNTELTELDVSHNTKLKSLSCVNAHIQDF--SSVGKIPALNN 365

Query: 449 LDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481
              +  Q   ++P+     +SL  I  S +L+ 
Sbjct: 366 NFEAEGQTI-TMPKETLTNNSL-TIAVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  101 bits (253), Expect = 6e-23
 Identities = 75/405 (18%), Positives = 137/405 (33%), Gaps = 61/405 (15%)

Query: 206 NYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIG 265
             +  +         +L  L    + I+  +  GI  LT L  L   SN++T L   D+ 
Sbjct: 28  FEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITTL---DLS 82

Query: 266 KLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLG 325
           + TNL  L   +N L+ +L   +     LT LN  +N     ++  + S    L  L+  
Sbjct: 83  QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTN----KLTKLDVSQNPLLTYLNCA 135

Query: 326 SNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIR 385
            N  T    I ++    LT ++   N+        +     L+ L  S N +T +     
Sbjct: 136 RNTLT---EIDVSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKITELD---- 186

Query: 386 ILMGCKNLKVLIIPLNFMDETMPDNDRLTS--ANGFKNLQVLGLAECKLKGQVPSWIGKL 443
            +   K L  L            D + +T    N    L  L  +  KL  ++   +  L
Sbjct: 187 -VSQNKLLNRLNC----------DTNNITKLDLNQNIQLTFLDCSSNKLT-EID--VTPL 232

Query: 444 KKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKA 503
            +L   D S N LT  +   +  +S L  +      +      +      L   Q +   
Sbjct: 233 TQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCR 286

Query: 504 NESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGN 563
               L+ +          +   I                +S    L++ L L++   +  
Sbjct: 287 KIKELDVTHNTQLYLLDCQAAGITEL------------DLSQNPKLVY-LYLNNTELT-E 332

Query: 564 IPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNL 608
           +   +S  T L+ +     H+  +   S+ ++  L+    AE   
Sbjct: 333 LD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.2 bits (232), Expect = 3e-20
 Identities = 75/382 (19%), Positives = 138/382 (36%), Gaps = 54/382 (14%)

Query: 222 LEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLS 281
                 +   +  +       L +L  L+ +++S+T +    I KLT L  L+  +N+++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT 77

Query: 282 GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCK 341
            +L   L    NLT L   SN     ++  + + L KL  L+  +N  T    + ++   
Sbjct: 78  -TLD--LSQNTNLTYLACDSN----KLTNLDVTPLTKLTYLNCDTNKLT---KLDVSQNP 127

Query: 342 SLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLN 401
            LT +N ARN L       +     L+ L    N           +     L  L    N
Sbjct: 128 LLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN 180

Query: 402 FMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVP 461
            + E           +  K L  L      +  ++   + +  +L  LD S N+LT  + 
Sbjct: 181 KITE--------LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID 228

Query: 462 RFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIG 521
             +  ++ L + D S N ++ E       L  LT      + +   ++ +       F  
Sbjct: 229 --VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLT-TLHCIQTDLLEIDLTHNTQLIYFQA 282

Query: 522 EYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSK 581
           E  + +   +                  L++LD      +  +   +SQ   L  + L+ 
Sbjct: 283 EGCRKIKELDVTHNT------------QLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNN 327

Query: 582 NHLSGEIPVS-LKRLHFLSAFN 602
             L+ E+ VS   +L  LS  N
Sbjct: 328 TELT-ELDVSHNTKLKSLSCVN 348

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  110 bits (277), Expect = 1e-26
 Identities = 67/335 (20%), Positives = 116/335 (34%), Gaps = 53/335 (15%)

Query: 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFN 230
            C +R +  S+                             ++P +I  +     L L  N
Sbjct: 32  HCHLRVVQCSDLGLK-------------------------AVPKEI--SPDTTLLDLQNN 64

Query: 231 HISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKN 290
            IS   K+    L  L  L L +N ++ +  +    L  L+ L +  N L   +P +L +
Sbjct: 65  DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPS 123

Query: 291 CINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSN-LFTGSLPITLNSCKSLTAVNLA 349
             +L  L +  N     +    FS L  +  +++G N L              L  + ++
Sbjct: 124 --SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180

Query: 350 RNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPD 409
             +L   I       ++L+ L L +N +  I      L+    L  L +  N +   + +
Sbjct: 181 EAKLT-GIPKD--LPETLNELHLDHNKIQAIELE--DLLRYSKLYRLGLGHNQI-RMIEN 234

Query: 410 NDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVP-------R 462
                S +    L+ L L   KL  +VP+ +  LK LQV+ L  N +T  V         
Sbjct: 235 G----SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVG 288

Query: 463 FLGNMSSLFHIDFSNNLISGEF--PKEFCRLPALT 495
           F    +    I   NN +      P  F  +    
Sbjct: 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (260), Expect = 2e-24
 Identities = 49/291 (16%), Positives = 93/291 (31%), Gaps = 27/291 (9%)

Query: 98  THLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNN 156
              + L+L +N +S           ++  + L +N    KI    F   + L    +S N
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112

Query: 157 SFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLT-GSLPDD 215
               +       +   S+  L + +NR              +     G N L        
Sbjct: 113 HLVEIPP-----NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167

Query: 216 IYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVL 275
            +    L  L +S   ++  I   +    +L  L L  N +  +   D+ + + L  L L
Sbjct: 168 AFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224

Query: 276 HNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVF--NFSTLLKLRVLDLGSNLFTGSL 333
            +N +      SL     L  L+L +N     +S        L  L+V+ L +N  T  +
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNN----KLSRVPAGLPDLKLLQVVYLHTNNIT-KV 279

Query: 334 PIT-------LNSCKSLTAVNLARNQLE-GQISPGIVA-LKSLSFLSLSNN 375
            +                 ++L  N +   ++ P     +     +   N 
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 66/397 (16%), Positives = 121/397 (30%), Gaps = 117/397 (29%)

Query: 245 SLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFF 304
            LR+++     L   +P++I    +   L L NN +S       K   +L  L L +N  
Sbjct: 34  HLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 305 EGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI-VA 363
              I    FS L KL+ L +  N     +P  L    SL  + +  N++  ++  G+   
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSG 145

Query: 364 LKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQ 423
           L++++ + +  N L N                                       F  L 
Sbjct: 146 LRNMNCIEMGGNPLENSG--------------------------------FEPGAFDGL- 172

Query: 424 VLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGE 483
                                KL  L +S  +LT  +P+      +L  +   +N I   
Sbjct: 173 ---------------------KLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-A 207

Query: 484 FPKE-FCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAA 542
              E   R   L             L        +N      +I                
Sbjct: 208 IELEDLLRYSKLY-----------RLGLG-----HN------QIRMIENGSLSFLPT--- 242

Query: 543 VSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVS-------LKRL 595
                  L  L L +N  S  +P  +  L  L+ + L  N+++ ++ V+         + 
Sbjct: 243 -------LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKR 293

Query: 596 HFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDL 632
            + +  ++  N +         +     ++FR   D 
Sbjct: 294 AYYNGISLFNNPV--------PYWEVQPATFRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 26/197 (13%), Positives = 54/197 (27%), Gaps = 61/197 (30%)

Query: 91  SLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLIT 150
            +       L+ L+L HN++                 +               L  N I 
Sbjct: 186 GIPKDLPETLNELHLDHNKIQ---------------AIELEDLLRYSKLYRLGLGHNQIR 230

Query: 151 FNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG 210
             + N S + L           ++R L L NN+ +                         
Sbjct: 231 -MIENGSLSFLP----------TLRELHLDNNKLS------------------------- 254

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGI-------VNLTSLRILELYSNSLTGL-IPR 262
            +P  +     L+ + L  N+I+  +           V       + L++N +    +  
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

Query: 263 DI-GKLTNLESLVLHNN 278
                +T+  ++   N 
Sbjct: 314 ATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 29/105 (27%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIF------------ 142
            L  L  L+L +N+LS   P+ L     ++++ L +N+   K+    F            
Sbjct: 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYY 296

Query: 143 ---RLTQNLITF-NVSNNSFTGLISWSAWVDSFCSIRHLDLSNNR 183
               L  N + +  V   +F  +               +   N +
Sbjct: 297 NGISLFNNPVPYWEVQPATFRCV----------TDRLAIQFGNYK 331

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  106 bits (267), Expect = 1e-25
 Identities = 47/214 (21%), Positives = 79/214 (36%), Gaps = 6/214 (2%)

Query: 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLT--GSLPDDIYTATSLEQLSLS 228
             S   L+L +N+            ++L       N L+  G      +  TSL+ L LS
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 229 FNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDI-GKLTNLESLVLHNNSLSGSLPSS 287
           FN +  ++ +  + L  L  L+   ++L  +    +   L NL  L + +     +    
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 288 LKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVN 347
                +L +L +  N F+ +     F+ L  L  LDL         P   NS  SL  +N
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 348 LARNQLEGQISPGI-VALKSLSFLSLSNNSLTNI 380
           ++ N     +       L SL  L  S N +   
Sbjct: 206 MSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTS 238

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (253), Expect = 1e-23
 Identities = 56/250 (22%), Positives = 96/250 (38%), Gaps = 12/250 (4%)

Query: 245 SLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFF 304
           S   +   S  LT  +P  I   ++   L L +N L             LT L+L SN  
Sbjct: 8   SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 305 E-GDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI-V 362
                   +      L+ LDL  N    ++       + L  ++   + L+      + +
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 363 ALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNL 422
           +L++L +L +S+           I  G  +L+VL +  N   E    +         +NL
Sbjct: 124 SLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNL 177

Query: 423 QVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISG 482
             L L++C+L+   P+    L  LQVL++S N            ++SL  +D+S N I  
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237

Query: 483 EFPKEFCRLP 492
              +E    P
Sbjct: 238 SKKQELQHFP 247

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.4 bits (230), Expect = 9e-21
 Identities = 47/238 (19%), Positives = 80/238 (33%), Gaps = 11/238 (4%)

Query: 98  THLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGK-IPSTIFRLTQNLITFNVSN 155
           +  + L L  N+L             +  + LSSN    K   S     T +L   ++S 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 156 NSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGL-GSCSRLKTFRAGFNYLTGSLPD 214
           N    +   S+       + HLD  ++         +  S   L        +      +
Sbjct: 88  NGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFN 143

Query: 215 DIYTA-TSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLES 272
            I+   +SLE L ++ N    +    I   L +L  L+L    L  L P     L++L+ 
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203

Query: 273 LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLK-LRVLDLGSNLF 329
           L + +N+         K   +L +L+   N                 L  L+L  N F
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 34/189 (17%), Positives = 72/189 (38%), Gaps = 6/189 (3%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN 155
             T L +L+LS N +     + L    ++ +D   ++ +     ++F   +NLI  ++S+
Sbjct: 76  GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

Query: 156 NSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLG-LGSCSRLKTFRAGFNYLTGSLPD 214
                  +     +   S+  L ++ N F              L         L   L  
Sbjct: 136 THTRVAFN--GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 192

Query: 215 DIYTA-TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKL-TNLES 272
             + + +SL+ L++S N+           L SL++L+   N +     +++    ++L  
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252

Query: 273 LVLHNNSLS 281
           L L  N  +
Sbjct: 253 LNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 55/302 (18%), Positives = 98/302 (32%), Gaps = 52/302 (17%)

Query: 339 SCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLII 398
           SC S T +      L   +  GI    S + L L +N L ++     +      L  L +
Sbjct: 6   SC-SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPH--GVFDKLTQLTKLSL 59

Query: 399 PLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG 458
             N +      +       G  +L+ L L+   +   + S    L++L+ LD   + L  
Sbjct: 60  SSNGLSFKGCCSQSDF---GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 459 SVPR-FLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSN 517
                   ++ +L ++D S+      F   F  L +L                 L    N
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE---------------VLKMAGN 160

Query: 518 NFIGEYKKILTFHEQYTWKTTASAAVSLLRLL-LHMLDLSHNNFSGNIPDQISQ-LTNLE 575
           +F                            L  L  LDLS       +       L++L+
Sbjct: 161 SFQ-----------------ENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ 202

Query: 576 RMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSS----SFRGNPD 631
            +++S N+         K L+ L   + + N++  +     +   FPSS    +   N  
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKK-QELQHFPSSLAFLNLTQNDF 260

Query: 632 LC 633
            C
Sbjct: 261 AC 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 57/319 (17%), Positives = 96/319 (30%), Gaps = 92/319 (28%)

Query: 269 NLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
           +   +  ++  L+ S+P+ + +  + T L L+SN  +  +    F  L +L  L L SN 
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSN- 62

Query: 329 FTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILM 388
                         L+          G          SL +L LS N +  ++       
Sbjct: 63  -------------GLSFKGCCSQSDFG--------TTSLKYLDLSFNGVITMSSNFL--- 98

Query: 389 GCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG-QVPSWIGKLKKLQ 447
                                        G + L+ L      LK     S    L+ L 
Sbjct: 99  -----------------------------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 448 VLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKE-FCRLPALTPEQDKNKANES 506
            LD+S      +       +SSL  +  + N     F  + F  L  LT           
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT----------- 178

Query: 507 YLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPD 566
                L            ++           ++          L +L++SHNNF      
Sbjct: 179 ----FLDLSQC-------QLEQLSPTAFNSLSS----------LQVLNMSHNNFFSLDTF 217

Query: 567 QISQLTNLERMDLSKNHLS 585
               L +L+ +D S NH+ 
Sbjct: 218 PYKCLNSLQVLDYSLNHIM 236

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  110 bits (276), Expect = 2e-25
 Identities = 53/269 (19%), Positives = 97/269 (36%), Gaps = 33/269 (12%)

Query: 92  LSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITF 151
           L    +   S L L+   LS   P +L    I +++++ N     +P     L       
Sbjct: 53  LKECLINQFSELQLNRLNLS-SLPDNLPPQ-ITVLEITQNALI-SLPELPASLE----YL 105

Query: 152 NVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGS 211
           +  +N  + L       +   S++HLD+ NN+ T  +P        L+   A  N LT  
Sbjct: 106 DACDNRLSTL------PELPASLKHLDVDNNQLTM-LPELPAL---LEYINADNNQLT-M 154

Query: 212 LPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLE 271
           LP+     TSLE LS+  N ++   +       SL  L++ +N L  L P    +  + E
Sbjct: 155 LPELP---TSLEVLSVRNNQLTFLPE----LPESLEALDVSTNLLESL-PAVPVRNHHSE 206

Query: 272 S----LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSN 327
                     N ++  +P ++ +      + L+ N     I      +    +    G  
Sbjct: 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI--RESLSQQTAQPDYHGPR 263

Query: 328 LFTGSLPITLNSCKSLTAVNLARNQLEGQ 356
           ++        N+     A  +     E +
Sbjct: 264 IYFSMSDGQQNTLHRPLADAVTAWFPENK 292

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 95.8 bits (238), Expect = 8e-21
 Identities = 64/393 (16%), Positives = 124/393 (31%), Gaps = 45/393 (11%)

Query: 205 FNYLTGSLPDDIYTA----TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLI 260
           +N ++     D ++A            + N     +K  +  +     L+L   +L+ L 
Sbjct: 19  YNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSL- 74

Query: 261 PRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLR 320
           P ++     +  L +  N+L  SLP    +   L  L+   N     +          L+
Sbjct: 75  PDNLPP--QITVLEITQNALI-SLPELPAS---LEYLDACDNRLS-TLP----ELPASLK 123

Query: 321 VLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNI 380
            LD+ +N  T  LP      + +   N   NQL   +        SL  LS+ NN LT +
Sbjct: 124 HLDVDNNQLT-MLPELPALLEYI---NADNNQLT-MLPE---LPTSLEVLSVRNNQLTFL 175

Query: 381 TGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWI 440
                     ++L+ L +  N ++       R   +   +        E ++   +P  I
Sbjct: 176 PELP------ESLEALDVSTNLLESLPAVPVRNHHSE--ETEIFFRCRENRIT-HIPENI 226

Query: 441 GKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALT----- 495
             L     + L  N L+  +   L   ++           S    ++      L      
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

Query: 496 --PEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLL--LH 551
             PE  ++  ++ +  F   + +N F     ++                 + L  L    
Sbjct: 287 WFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASA 346

Query: 552 MLDLSHNNFSGNIPDQISQLTNLERMDLSKNHL 584
            L       + +  +       L   +L K  L
Sbjct: 347 ELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.6 bits (222), Expect = 6e-19
 Identities = 57/361 (15%), Positives = 96/361 (26%), Gaps = 89/361 (24%)

Query: 260 IPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCI-NLTLLNLQSNFFEGDISVFNFSTLLK 318
           I   I    +L     +N        +   +         L        +S+     + +
Sbjct: 3   IMLPINNNFSLSQNSFYNTISG--TYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 319 LRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT 378
              L L     + SLP  L     +T + + +N L   +        SL +L   +N L+
Sbjct: 61  FSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELP---ASLEYLDACDNRLS 113

Query: 379 NITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTS-ANGFKNLQVLGLAECKLKGQVP 437
            +           +LK L +  N          +LT        L+ +     +L   +P
Sbjct: 114 TLPELP------ASLKHLDVDNN----------QLTMLPELPALLEYINADNNQLT-MLP 156

Query: 438 SWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPE 497
                L   +VL +  NQLT  +P    ++ +L   D S NL+    P    R       
Sbjct: 157 ELPTSL---EVLSVRNNQLT-FLPELPESLEAL---DVSTNLLE-SLPAVPVRNHHS--- 205

Query: 498 QDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSH 557
                                                                       
Sbjct: 206 -------------------------------------------------EETEIFFRCRE 216

Query: 558 NNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQ 617
           N  + +IP+ I  L     + L  N LS  I  SL +      ++        S      
Sbjct: 217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275

Query: 618 F 618
            
Sbjct: 276 L 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.1 bits (218), Expect = 2e-18
 Identities = 56/268 (20%), Positives = 91/268 (33%), Gaps = 43/268 (16%)

Query: 235 SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCI-- 292
           SI   I N  SL     + N+++G            E   L   +      S LK C+  
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENR-NEAVSLLKECLIN 59

Query: 293 NLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQ 352
             + L L       ++S    +   ++ VL++  N    SLP       SL  ++   N+
Sbjct: 60  QFSELQLNRL----NLSSLPDNLPPQITVLEITQNALI-SLPELP---ASLEYLDACDNR 111

Query: 353 LEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDR 412
           L   +     +LK    L + NN LT +            L+ +            DN++
Sbjct: 112 LS-TLPELPASLKH---LDVDNNQLTMLPELPA------LLEYINA----------DNNQ 151

Query: 413 LTS-ANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSL- 470
           LT       +L+VL +   +L   +P     L+    LD+S N L  S+P          
Sbjct: 152 LTMLPELPTSLEVLSVRNNQLT-FLPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSE 206

Query: 471 ---FHIDFSNNLISGEFPKEFCRLPALT 495
                     N I+   P+    L    
Sbjct: 207 ETEIFFRCRENRIT-HIPENILSLDPTC 233

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (272), Expect = 4e-25
 Identities = 73/411 (17%), Positives = 143/411 (34%), Gaps = 38/411 (9%)

Query: 91  SLSIGNLTHLSHLNLSHNRLS----GEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQ 146
            +S     +L HL+LS N        +   ++S   +K + LS+ H +      I  L  
Sbjct: 83  KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQ--LKFLGLSTTHLEKSSVLPIAHLNI 140

Query: 147 NLITFNVSNN--------SFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPL---GLGSC 195
           + +   +                 + S  +    +     + +        L    +   
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200

Query: 196 SRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNS 255
                     + L     +   +  +L  +  ++N     ++   V  T++    + +  
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL--VWHTTVWYFSISNVK 258

Query: 256 LTGLIPRDIG-----KLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISV 310
           L G +           L  L    + ++          +   N+ + N   +     + +
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHM 317

Query: 311 FNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE--GQISPGIVALKSLS 368
              S +     LD  +NL T ++         L  + L  NQL+   +I+     +KSL 
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377

Query: 369 FLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLA 428
            L +S NS++            K+L  L +  N + +T+     L        ++VL L 
Sbjct: 378 QLDISQNSVSYD-EKKGDCSWTKSLLSLNMSSNILTDTIF--RCLPP-----RIKVLDLH 429

Query: 429 ECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPR-FLGNMSSLFHIDFSNN 478
             K+K  +P  + KL+ LQ L+++ NQL  SVP      ++SL  I    N
Sbjct: 430 SNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (259), Expect = 2e-23
 Identities = 101/531 (19%), Positives = 185/531 (34%), Gaps = 100/531 (18%)

Query: 98  THLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNN 156
              + LN+S N +S  + S + S + ++I+ +S N  Q  +  ++F+  Q L   ++S+N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 157 SFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDI 216
               +           +++HLDLS N F   +P+              F  +        
Sbjct: 80  KLVKISC-----HPTVNLKHLDLSFNAFDA-LPIC-----------KEFGNM-------- 114

Query: 217 YTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLH 276
              + L+ L LS  H+  S    I +L   ++L +   +       D   L +  +  LH
Sbjct: 115 ---SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDFNTESLH 169

Query: 277 NNSLSGSLPSSLKNCINLTLLNLQ----SNFFEGDISVFNFSTLLKLRVLDLGSNLFTGS 332
               +      + +    T+ NL+        E +   +  S L KL+     SNL   +
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 333 LPITLNS---------CKSLTAVNLARNQLEGQISPGI-----VALKSLSFLSLSNNSLT 378
           +  T NS           ++   +++  +L+GQ+          +LK+LS   + ++   
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 379 NITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPS 438
                I  +    N+ +    ++           +   +       L  +   L   V  
Sbjct: 290 FPQSYIYEIF--SNMNIKNFTVSGTRMVH-----MLCPSKISPFLHLDFSNNLLTDTVFE 342

Query: 439 WIGKLKKLQVLDLSFNQLTGSVPRFLG---NMSSLFHIDFSNNLISGEFPKEFC-RLPAL 494
             G L +L+ L L  NQL   + +       M SL  +D S N +S +  K  C    +L
Sbjct: 343 NCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 495 TPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLD 554
                           SL   SN                            L   + +LD
Sbjct: 402 L---------------SLNMSSNIL-------------------TDTIFRCLPPRIKVLD 427

Query: 555 LSHNNFSGNIPDQISQLTNLERMDLSKNHLS---GEIPVSLKRLHFLSAFN 602
           L  N    +IP Q+ +L  L+ ++++ N L      I   L  L  +    
Sbjct: 428 LHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.9 bits (223), Expect = 4e-19
 Identities = 75/407 (18%), Positives = 141/407 (34%), Gaps = 29/407 (7%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
            +P D+  +     L++S N+IS    + I++L+ LRIL +  N +  L          L
Sbjct: 14  HVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 271 ESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330
           E L L +N L   +       +NL  L+L  N F+       F  + +L+ L L +    
Sbjct: 72  EYLDLSHNKLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGC 390
            S  + +        + +       +  P    L+  +  SL     TN       ++  
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPE--GLQDFNTESLHIVFPTN--KEFHFILDV 184

Query: 391 KNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLD 450
               V  + L+ +   + DN      +    LQ                   L  ++   
Sbjct: 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT----------LNNIETTW 234

Query: 451 LSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEF 510
            SF ++   V        S+ ++     L   +F      L AL+  Q  +     + + 
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQS 293

Query: 511 SLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQ 570
            +++  +N       I  F    T          +   L   LD S+N  +  + +    
Sbjct: 294 YIYEIFSNM-----NIKNFTVSGTRMVHMLCPSKISPFL--HLDFSNNLLTDTVFENCGH 346

Query: 571 LTNLERMDLSKNHLS--GEIPVSLKRLHFLSAFNVAENNLRGSIPSG 615
           LT LE + L  N L    +I     ++  L   ++++N++      G
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.5 bits (196), Expect = 8e-16
 Identities = 61/319 (19%), Positives = 104/319 (32%), Gaps = 37/319 (11%)

Query: 17  LHIIIIILSCFSSFCQACNQIDQDSLLSLGFNISSPGLNWSSSTDCCLWEGIKCDANGRV 76
           LHI+      F        +   +  LS    +          +     +     +N  +
Sbjct: 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227

Query: 77  SHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS------NYIKIIDLSS 130
           +++   W      + L     T + + ++S+ +L G+               + I  + S
Sbjct: 228 NNIETTWNSFIRILQLV--WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285

Query: 131 NHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPL 190
           + F     S I+ +  N+   N + +    +              HLD SNN  T  V  
Sbjct: 286 DVFGF-PQSYIYEIFSNMNIKNFTVSGTRMVHMLCP--SKISPFLHLDFSNNLLTDTVFE 342

Query: 191 GLGSCSRLKTFRAGFNYLTGSLPDDIYTA---TSLEQLSLSFNHISGSIKNGI-VNLTSL 246
             G  + L+T     N L   L           SL+QL +S N +S   K G      SL
Sbjct: 343 NCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 247 RILELYSNSLTGL---------------------IPRDIGKLTNLESLVLHNNSLSGSLP 285
             L + SN LT                       IP+ + KL  L+ L + +N L     
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD 461

Query: 286 SSLKNCINLTLLNLQSNFF 304
                  +L  + L +N +
Sbjct: 462 GIFDRLTSLQKIWLHTNPW 480

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  107 bits (269), Expect = 1e-24
 Identities = 74/408 (18%), Positives = 156/408 (38%), Gaps = 34/408 (8%)

Query: 91  SLSIGNLTHLSHLNLSHNRL-----SGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLT 145
           ++S   +  L HL+LS N         EF  +L+   +  + LS+  F+      +  L 
Sbjct: 114 NISCCPMASLRHLDLSFNDFDVLPVCKEF-GNLTK--LTFLGLSAAKFRQLDLLPVAHLH 170

Query: 146 QNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGF 205
            + I  ++ +    G  + S  + +   +  +   N+ F+  V + + +   L+      
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 206 NYLTG----SLPDDIYTATSLEQLSLSFNHISGSIKNGI---VNLTSLRILELYSNSLTG 258
           N        +   ++    +L  ++L     +      +        +  L +Y+ ++T 
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 259 LIPRDIG-----KLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNF 313
            I R+        L +L    + N     S  +       + +  L  +     I +   
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT-PFIHMVCP 349

Query: 314 STLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLS 373
            +      L+   N+FT S+    ++ K L  + L RN L+       +  K++S L   
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETL 408

Query: 374 NNSLTNIT--GAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECK 431
           + SL ++      R     +++ VL +  N +  ++     L        ++VL L   +
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--CLPP-----KVKVLDLHNNR 461

Query: 432 LKGQVPSWIGKLKKLQVLDLSFNQLTGSVPR-FLGNMSSLFHIDFSNN 478
           +   +P  +  L+ LQ L+++ NQL  SVP      ++SL +I   +N
Sbjct: 462 IM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =   99 bits (249), Expect = 4e-22
 Identities = 95/550 (17%), Positives = 176/550 (32%), Gaps = 83/550 (15%)

Query: 89  TISLSIGNLTHLS-----HLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFR 143
            ++L +G++T  S      ++ S+  L+   P  L     K + LS N    ++      
Sbjct: 17  ALALIVGSMTPFSNELESMVDYSNRNLT-HVPKDLPPR-TKALSLSQNSIS-ELRMPDIS 73

Query: 144 LTQNLITFNVSNNSFTGLISWSAWV-DSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFR 202
               L    +S+N    L      V      + +LD+S+NR                   
Sbjct: 74  FLSELRVLRLSHNRIRSL---DFHVFLFNQDLEYLDVSHNRLQ----------------- 113

Query: 203 AGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIV--NLTSLRILELYSNSLTGLI 260
                   ++        SL  L LSFN     +       NLT L  L L +     L 
Sbjct: 114 --------NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLD 162

Query: 261 PRDIGKL-TNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN----FFEGDISVFNFST 315
              +  L  +   L L +  + G    SL+   N T+L+L  +    F        N   
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 316 LLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNN 375
            L+L  + L        +       +  T +N+    +E      +   +      +   
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 376 SLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQ 435
           ++ N+T                     + E +   +   S    K+L +  +        
Sbjct: 282 NIYNLT---------------------ITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320

Query: 436 VPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALT 495
             +      ++ +  LS +           + SS   ++F+ N+ +    +    L  L 
Sbjct: 321 KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380

Query: 496 PEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLL--LHML 553
               +    +     + FK +          L   +       + A          + +L
Sbjct: 381 TLILQRNGLK-----NFFKVALMTKNM--SSLETLDVSLNSLNSHAYDRTCAWAESILVL 433

Query: 554 DLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP 613
           +LS N  +G++   +     ++ +DL  N +   IP  +  L  L   NVA N L+ S+P
Sbjct: 434 NLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVP 489

Query: 614 SGGQFDTFPS 623
             G FD   S
Sbjct: 490 -DGVFDRLTS 498

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.2 bits (247), Expect = 6e-22
 Identities = 82/461 (17%), Positives = 163/461 (35%), Gaps = 38/461 (8%)

Query: 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNH 231
             + L LS N  +      +   S L+  R   N +  SL   ++     LE L +S N 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 232 ISGSIKNGIVNLTSLRILELYSNSLTGL-IPRDIGKLTNLESLVLHNNSL-SGSLPSSLK 289
           +  +I      + SLR L+L  N    L + ++ G LT L  L L         L     
Sbjct: 112 LQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 290 NCINLTLLNLQSNFFE-GDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNL 348
             ++  LL+L S   + G+           L ++   ++LF+  + +++N+   L   N+
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 349 ARNQLEGQ----ISPGIVALKSLSFLSLSNNSLT-NITGAIRILMGCKNLKVLIIPLNFM 403
             N    Q        +    +L  ++L +   T   +  +      + ++ L I    +
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 404 DETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRF 463
            E +   +   S    K+L +  +          +      ++ +  LS +         
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 464 LGNMSSLFHIDFSNNLISGEFPKEFCRLPALT------------PEQDKNKANESYLEF- 510
             + SS   ++F+ N+ +    +    L  L              +      N S LE  
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408

Query: 511 -----SLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIP 565
                SL   + +    + + +      +   T S    L   +  +LDL +N    +IP
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV-KVLDLHNNRIM-SIP 466

Query: 566 DQISQLTNLERMDLSKNHLSGEIPV----SLKRLHFLSAFN 602
             ++ L  L+ ++++ N L   +P      L  L ++   +
Sbjct: 467 KDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.9 bits (197), Expect = 7e-16
 Identities = 50/262 (19%), Positives = 93/262 (35%), Gaps = 20/262 (7%)

Query: 78  HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFP------SSLSSNYIKIIDLSSN 131
           H+   WK               + +LN+ +  ++          S  +   + I  + + 
Sbjct: 258 HIETTWKCSVK--LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315

Query: 132 HFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLG 191
            F       ++ +   +    +S +    +        S  S   L+ + N FT  V  G
Sbjct: 316 VFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCP--PSPSSFTFLNFTQNVFTDSVFQG 372

Query: 192 LGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHI----SGSIKNGIVNLTSLR 247
             +  RL+T     N L  +         ++  L      +    S +         S+ 
Sbjct: 373 CSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431

Query: 248 ILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGD 307
           +L L SN LTG + R +     ++ L LHNN +  S+P  + +   L  LN+ SN  +  
Sbjct: 432 VLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-S 487

Query: 308 ISVFNFSTLLKLRVLDLGSNLF 329
           +    F  L  L+ + L  N +
Sbjct: 488 VPDGVFDRLTSLQYIWLHDNPW 509

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  106 bits (266), Expect = 1e-24
 Identities = 76/414 (18%), Positives = 142/414 (34%), Gaps = 71/414 (17%)

Query: 98  THLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNN 156
            H+++++LS N ++    +S S    ++ + +        I +  FR   +LI   +  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 157 SFTGLISWSAWV-DSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDD 215
            F  L        +   ++  L L+     G V                       L  +
Sbjct: 90  QFLQL---ETGAFNGLANLEVLTLTQCNLDGAV-----------------------LSGN 123

Query: 216 IYTA-TSLEQLSLSFNHISGSIKNGIV--NLTSLRILELYSNSLTGLIPRDIGKLTNLES 272
            +   TSLE L L  N+I   I+      N+    +L+L  N +  +   D+        
Sbjct: 124 FFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182

Query: 273 LVL----------HNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDIS--VFNFSTLLKLR 320
            +L          +   L      +     ++T L+L  N F+  ++   F+     K++
Sbjct: 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242

Query: 321 VL----------DLGSNLFTGSLPITLN--SCKSLTAVNLARNQLEGQISPGI-VALKSL 367
            L            G   F      T        +   +L+++++   +   +      L
Sbjct: 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDL 301

Query: 368 SFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDN--DRLTSANGFKNLQVL 425
             L+L+ N +  I        G  +L  L +  NF+  ++     + L        L+VL
Sbjct: 302 EQLTLAQNEINKI--DDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLD------KLEVL 352

Query: 426 GLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPR-FLGNMSSLFHIDFSNN 478
            L+   ++         L  L+ L L  NQL  SVP      ++SL  I    N
Sbjct: 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.5 bits (230), Expect = 4e-20
 Identities = 60/312 (19%), Positives = 104/312 (33%), Gaps = 21/312 (6%)

Query: 205 FNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYSNSLTGLIPRD 263
            N +             L+ L +        I+N     L+SL IL+L  N    L    
Sbjct: 39  LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98

Query: 264 IGKLTNLESLVLHNNSLSGSL--PSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRV 321
              L NLE L L   +L G++   +  K   +L +L L+ N  +       F  + +  V
Sbjct: 99  FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158

Query: 322 LDLGSNLFTGSLPITLNSC--KSLTAVNLARNQL--------EGQISPGIVALKSLSFLS 371
           LDL  N         L +   K  T + L+   L          +         S++ L 
Sbjct: 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218

Query: 372 LSNNSLTNI-TGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLT--SANGFKNLQVLGLA 428
           LS N             +    ++ LI+  ++   +   +          FK L+  G+ 
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278

Query: 429 ECKLKG----QVPSWI-GKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGE 483
            C L       +   +      L+ L L+ N++          ++ L  ++ S N +   
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338

Query: 484 FPKEFCRLPALT 495
             + F  L  L 
Sbjct: 339 DSRMFENLDKLE 350

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.7 bits (228), Expect = 7e-20
 Identities = 75/424 (17%), Positives = 132/424 (31%), Gaps = 77/424 (18%)

Query: 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDI-GKLTNLESLVLHNN 278
             +  + LS N I+   +     L  L+ L++   +   +I  +    L++L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 279 SLSGSLPSSLKNCINLTLLNLQSN-FFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITL 337
                   +     NL +L L         +S   F  L  L +L L  N      P + 
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 338 -NSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVL 396
             + +    ++L  N+        + ++     L+      T              L++ 
Sbjct: 150 FLNMRRFHVLDLTFNK--------VKSICEEDLLNFQGKHFTL-------------LRLS 188

Query: 397 IIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWI-GKLKKLQVLDLSFNQ 455
            I L  M+E     ++  +     ++  L L+    K  +       +   ++  L  + 
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248

Query: 456 LTGSVPRFLGN--------------MSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKN 501
                  F                  S +   D S + I       F     L       
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLE------ 302

Query: 502 KANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFS 561
                  + +L   + N      +I    +   W  T           L  L+LS N   
Sbjct: 303 -------QLTL---AQN------EINKIDDNAFWGLTH----------LLKLNLSQNFLG 336

Query: 562 GNIPDQI-SQLTNLERMDLSKNHLSGEIPV-SLKRLHFLSAFNVAENNLRGSIPSGGQFD 619
            +I  ++   L  LE +DLS NH+   +   S   L  L    +  N L+ S+P G  FD
Sbjct: 337 -SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGI-FD 392

Query: 620 TFPS 623
              S
Sbjct: 393 RLTS 396

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.4 bits (222), Expect = 4e-19
 Identities = 58/285 (20%), Positives = 102/285 (35%), Gaps = 31/285 (10%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSL--SSNYIKIIDLSSNHFQGKIPSTIFR--LTQNLITF 151
            LT L  L L  N +    P+S   +     ++DL+ N  +  I          ++    
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLL 185

Query: 152 NVSNNSFTGL-ISWSAWV-----DSFCSIRHLDLSNNRFTGPVP---LGLGSCSRLKTFR 202
            +S+ +   +   W  W          SI  LDLS N F   +        + +++++  
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 203 AGFNYLTG---------SLPDDIY---TATSLEQLSLSFNHISGSIKNGI-VNLTSLRIL 249
              +Y  G            +  +    A+ ++   LS + I  ++   +  + T L  L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQL 304

Query: 250 ELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPS-SLKNCINLTLLNLQSNFFEGDI 308
            L  N +  +       LT+L  L L  N L  S+ S   +N   L +L+L  N     +
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRA-L 362

Query: 309 SVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL 353
              +F  L  L+ L L +N          +   SL  + L  N  
Sbjct: 363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.9 bits (192), Expect = 3e-15
 Identities = 54/257 (21%), Positives = 91/257 (35%), Gaps = 50/257 (19%)

Query: 78  HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRL----SGEFPSSLSSNYIKIIDLSSNHF 133
              +    L      +    T ++ L+LS N      +  F  +++   I+ + LS+++ 
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 134 QGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLG 193
            G                +  N +F GL            ++  DLS ++          
Sbjct: 252 MGS------SFGHTNFK-DPDNFTFKGL--------EASGVKTCDLSKSKIF-------- 288

Query: 194 SCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNHISGSIKNGI-VNLTSLRILEL 251
                            +L   +++  T LEQL+L+ N I+  I +     LT L  L L
Sbjct: 289 -----------------ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNL 330

Query: 252 YSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPS-SLKNCINLTLLNLQSNFFEGDISV 310
             N L  +  R    L  LE L L  N +  +L   S     NL  L L +N  +  +  
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPD 388

Query: 311 FNFSTLLKLRVLDLGSN 327
             F  L  L+ + L +N
Sbjct: 389 GIFDRLTSLQKIWLHTN 405

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  102 bits (256), Expect = 4e-23
 Identities = 53/304 (17%), Positives = 100/304 (32%), Gaps = 37/304 (12%)

Query: 222 LEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLS 281
           + +       I   I              L   S+T  +     +L +++ ++ +N+ + 
Sbjct: 1   MGETITVSTPIK-QIFP-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 282 GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPIT----L 337
            S+   ++   N+T L L  N       +   + L  L  L L  N       I     L
Sbjct: 57  -SV-QGIQYLPNVTKLFLNGNKLT---DIKPLTNLKNLGWLFLDEN------KIKDLSSL 105

Query: 338 NSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLI 397
              K L +++L  N +   I+  +V L  L  L L NN +T+IT     L     L  L 
Sbjct: 106 KDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITV----LSRLTKLDTLS 159

Query: 398 IPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLT 457
           +  N + +       +    G   LQ L L++  +       +  LK L VL+L   +  
Sbjct: 160 LEDNQISD-------IVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECL 210

Query: 458 GSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCR---LPALTPEQDKNKANESYLEFSLFK 514
                   N+     +  ++  +              P +     +     S++ +    
Sbjct: 211 NKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT 270

Query: 515 GSNN 518
               
Sbjct: 271 IGKA 274

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 95.2 bits (236), Expect = 1e-20
 Identities = 66/255 (25%), Positives = 100/255 (39%), Gaps = 44/255 (17%)

Query: 169 DSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLS 228
           D+F      +L     T  V                                S++Q+  +
Sbjct: 18  DAFAETIKDNLKKKSVTDAVTQN--------------------------ELNSIDQIIAN 51

Query: 229 FNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL 288
            + I  S++ GI  L ++  L L  N LT + P  +  L NL  L L  N +   L SSL
Sbjct: 52  NSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DL-SSL 105

Query: 289 KNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNL 348
           K+   L  L+L+ N    DI+      L +L  L LG+N  T      L+    L  ++L
Sbjct: 106 KDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSL 160

Query: 349 ARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLN-FMDETM 407
             NQ+   I P +  L  L  L LS N ++++      L G KNL VL +     +++ +
Sbjct: 161 EDNQIS-DIVP-LAGLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQECLNKPI 214

Query: 408 PDNDRLTSANGFKNL 422
                L   N  KN 
Sbjct: 215 NHQSNLVVPNTVKNT 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.1 bits (202), Expect = 2e-16
 Identities = 57/311 (18%), Positives = 98/311 (31%), Gaps = 70/311 (22%)

Query: 96  NLTHLSHLNLSHNRLSGEFP-SSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVS 154
                   NL    ++     + L+S  I  I  +++  +                    
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIK-------------------- 56

Query: 155 NNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPD 214
             S  G+           ++  L L+ N+ T   PL                        
Sbjct: 57  --SVQGI-------QYLPNVTKLFLNGNKLTDIKPLT----------------------- 84

Query: 215 DIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLV 274
                 +L  L L  N I   + + + +L  L+ L L  N ++ +    +  L  LESL 
Sbjct: 85  ---NLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGISDING--LVHLPQLESLY 137

Query: 275 LHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLP 334
           L NN ++    + L     L  L+L+ N    DI     + L KL+ L L  N  +  L 
Sbjct: 138 LGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV--PLAGLTKLQNLYLSKNHIS-DLR 191

Query: 335 ITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLK 394
             L   K+L  + L   +   +       L   + +  ++ SL      I      +   
Sbjct: 192 -ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI-ISDDGDYEKPN 249

Query: 395 VLIIPLNFMDE 405
           V      F +E
Sbjct: 250 VKWHLPEFTNE 260

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.8 bits (191), Expect = 4e-15
 Identities = 49/250 (19%), Positives = 90/250 (36%), Gaps = 24/250 (9%)

Query: 76  VSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSG-EFPSSLSSNYIKIIDLSSNHFQ 134
                L  K +T  ++ +   L  +  +  +++ +   +    L +  +  + L+ N   
Sbjct: 23  TIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYLPN--VTKLFLNGN--- 75

Query: 135 GKIPSTIFRLTQ--NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGL 192
            K+ + I  LT   NL    +  N    L S    +     ++ L L +N  +     GL
Sbjct: 76  -KL-TDIKPLTNLKNLGWLFLDENKIKDLSS----LKDLKKLKSLSLEHNGIS--DINGL 127

Query: 193 GSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY 252
               +L++   G N +T      +   T L+ LSL  N IS  I   +  LT L+ L L 
Sbjct: 128 VHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLS 183

Query: 253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFN 312
            N ++ L    +  L NL+ L L +        +   N +    +            + +
Sbjct: 184 KNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 241

Query: 313 FSTLLKLRVL 322
                K  V 
Sbjct: 242 DGDYEKPNVK 251

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.7 bits (175), Expect = 3e-13
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 22/230 (9%)

Query: 76  VSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQG 135
           +  +      +  ++   I  L +++ L L+ N+L+   P +   N +  + L  N    
Sbjct: 45  IDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKN-LGWLFLDEN---- 97

Query: 136 KIPSTIFRLTQ--NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLG 193
           KI   +  L     L + ++ +N  + +      +     +  L L NN+ T      L 
Sbjct: 98  KI-KDLSSLKDLKKLKSLSLEHNGISDING----LVHLPQLESLYLGNNKITDITV--LS 150

Query: 194 SCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS 253
             ++L T     N ++  +   +   T L+ L LS NHIS  ++  +  L +L +LEL+S
Sbjct: 151 RLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS 206

Query: 254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNF 303
                        L    ++   + SL    P  + +  +    N++ + 
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHL 254

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.4 bits (169), Expect = 2e-12
 Identities = 56/317 (17%), Positives = 99/317 (31%), Gaps = 84/317 (26%)

Query: 294 LTLLNLQSNFFEGDIS-VFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQ 352
           +      S      I  +F      +    +L     T    +T N   S+  +    + 
Sbjct: 1   MGETITVST----PIKQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSD 54

Query: 353 LEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDR 412
           ++  +  GI  L +++ L L+ N LT+I      L   KNL  L +  N          +
Sbjct: 55  IK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDEN----------K 98

Query: 413 LTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFH 472
           +   +  K+L                     KKL+ L L  N ++  +   L ++  L  
Sbjct: 99  IKDLSSLKDL---------------------KKLKSLSLEHNGIS-DIN-GLVHLPQLES 135

Query: 473 IDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQ 532
           +   NN I+        RL  L                SL    +N I      +     
Sbjct: 136 LYLGNNKITD--ITVLSRLTKLD-------------TLSL---EDNQI----SDIVPLAG 173

Query: 533 YTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSL 592
            T               L  L LS N+ S ++   ++ L NL+ ++L       +     
Sbjct: 174 LTK--------------LQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 593 KRLHFLSAFNVAENNLR 609
             L   +     + +L 
Sbjct: 218 SNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 39/213 (18%), Positives = 74/213 (34%), Gaps = 16/213 (7%)

Query: 94  IGNLTHLSHLNLSHNRLSG-EFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152
           + NL +L  L L  N++        L    +K + L  N     I + +  L   L +  
Sbjct: 83  LTNLKNLGWLFLDENKIKDLSSLKDLKK--LKSLSLEHNGIS-DI-NGLVHLP-QLESLY 137

Query: 153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSL 212
           + NN  T +      +     +  L L +N+ +  VPL     ++L+      N+++  L
Sbjct: 138 LGNNKITDITV----LSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHIS-DL 190

Query: 213 PDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLES 272
              +    +L+ L L          N   NL     ++    SL    P  I    + E 
Sbjct: 191 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEK 247

Query: 273 LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFE 305
             +  +    +   S      +T+   ++ F  
Sbjct: 248 PNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 99.0 bits (247), Expect = 5e-23
 Identities = 50/251 (19%), Positives = 101/251 (40%), Gaps = 26/251 (10%)

Query: 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNS 279
            +  +++   ++++ ++     +L  +  L  +   +T +    +  L NL  L L +N 
Sbjct: 19  ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQ 74

Query: 280 LSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS 339
           ++    + LKN   +T L L  N  +   +V   + L  ++ LDL S   T   P  L  
Sbjct: 75  ITD--LAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDVTP--LAG 127

Query: 340 CKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIP 399
             +L  + L  NQ+   ISP +  L +L +LS+ N  ++++T     L     L  L   
Sbjct: 128 LSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKAD 181

Query: 400 LNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGS 459
            N + +       ++      NL  + L   ++     S +     L ++ L+   +T  
Sbjct: 182 DNKISD-------ISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQ 232

Query: 460 VPRFLGNMSSL 470
              +  N+   
Sbjct: 233 PVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 88.6 bits (220), Expect = 2e-19
 Identities = 61/316 (19%), Positives = 120/316 (37%), Gaps = 33/316 (10%)

Query: 169 DSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLS 228
            +  +   +    +  T  V         + T  A    +T    + +    +L  L L 
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELK 71

Query: 229 FNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL 288
            N I+  +   + NLT +  LEL  N L  +    I  L ++++L L +  ++    + L
Sbjct: 72  DNQIT-DLAP-LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD--VTPL 125

Query: 289 KNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNL 348
               NL +L L  N    +IS    + L  L+ L +G+   +   P  L +   LT +  
Sbjct: 126 AGLSNLQVLYLDLNQIT-NIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180

Query: 349 ARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMP 408
             N++       + +L +L  + L NN +++++     L    NL ++ +          
Sbjct: 181 DDNKISD--ISPLASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTL---------- 224

Query: 409 DNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMS 468
            N  +T+   F N  ++      +KG   + I           +   LT ++  F+ N+S
Sbjct: 225 TNQTITNQPVFYNNNLVVPN--VVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVS 282

Query: 469 SLFHIDFSNNLISGEF 484
             F+   +    +  F
Sbjct: 283 YTFNQSVTFKNTTVPF 298

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 55/286 (19%), Positives = 98/286 (34%), Gaps = 47/286 (16%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN 155
            L +   +    + ++                            T   L   + T +   
Sbjct: 17  ALANAIKIAAGKSNVTD-------------------------TVTQADLD-GITTLSAFG 50

Query: 156 NSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDD 215
              T +      V    ++  L+L +N+ T   P  L + +++       N L       
Sbjct: 51  TGVTTIEG----VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN--VSA 102

Query: 216 IYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVL 275
           I    S++ L L+   I+      +  L++L++L L  N +T + P  +  LTNL+ L +
Sbjct: 103 IAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 158

Query: 276 HNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPI 335
            N  +S    + L N   LT L    N    DIS    ++L  L  + L +N  +   P 
Sbjct: 159 GNAQVSDL--TPLANLSKLTTLKADDNKIS-DIS--PLASLPNLIEVHLKNNQISDVSP- 212

Query: 336 TLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNIT 381
            L +  +L  V L    +  Q  P       +    +   S   I 
Sbjct: 213 -LANTSNLFIVTLTNQTITNQ--PVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.7 bits (184), Expect = 9e-15
 Identities = 50/254 (19%), Positives = 101/254 (39%), Gaps = 22/254 (8%)

Query: 78  HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSG-EFPSSLSSNYIKIIDLSSNHFQGK 136
            +      +T T++ +  +L  ++ L+     ++  E    L++  +  ++L  N     
Sbjct: 23  KIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQYLNN--LIGLELKDNQI--T 76

Query: 137 IPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCS 196
             + +  LT  +    +S N    + +    +    SI+ LDL++ + T   P  L   S
Sbjct: 77  DLAPLKNLT-KITELELSGNPLKNVSA----IAGLQSIKTLDLTSTQITDVTP--LAGLS 129

Query: 197 RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSL 256
            L+      N +T      +   T+L+ LS+    +S  +   + NL+ L  L+   N +
Sbjct: 130 NLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDNKI 185

Query: 257 TGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTL 316
           + + P  +  L NL  + L NN +S    S L N  NL ++ L +         +N + +
Sbjct: 186 SDISP--LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLV 241

Query: 317 LKLRVLDLGSNLFT 330
           +   V         
Sbjct: 242 VPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 42/208 (20%), Positives = 82/208 (39%), Gaps = 24/208 (11%)

Query: 274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSL 333
           +    +++   P       N   +    +     ++    + L  +  L       T ++
Sbjct: 3   ITQPTAINVIFP--DPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVT-TI 56

Query: 334 PITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNL 393
              +    +L  + L  NQ+   ++P +  L  ++ L LS N L N++     + G +++
Sbjct: 57  EG-VQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSA----IAGLQSI 109

Query: 394 KVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSF 453
           K L +    + +       +T   G  NLQVL L   ++    P  +  L  LQ L +  
Sbjct: 110 KTLDLTSTQITD-------VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGN 160

Query: 454 NQLTGSVPRFLGNMSSLFHIDFSNNLIS 481
            Q++   P  L N+S L  +   +N IS
Sbjct: 161 AQVSDLTP--LANLSKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 47/236 (19%), Positives = 82/236 (34%), Gaps = 43/236 (18%)

Query: 94  IGNLTHLSHLNLSHNRLSG-EFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152
           + NLT ++ L LS N L      + L S  IK +DL+S       P        NL    
Sbjct: 81  LKNLTKITELELSGNPLKNVSAIAGLQS--IKTLDLTSTQITDVTP---LAGLSNLQVLY 135

Query: 153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSL 212
           +  N  T +      +    ++++L + N + +   PL                      
Sbjct: 136 LDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTPLA--------------------- 170

Query: 213 PDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLES 272
                  + L  L    N IS  I   + +L +L  + L +N ++ + P  +   +NL  
Sbjct: 171 -----NLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221

Query: 273 LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
           + L N +++           NL + N+        I+    S        +L  NL
Sbjct: 222 VTLTNQTITNQPVFYNN---NLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNL 274

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 48/289 (16%), Positives = 96/289 (33%), Gaps = 57/289 (19%)

Query: 310 VFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSF 369
           +F    L     +  G +  T    +T      +T ++     +      G+  L +L  
Sbjct: 12  IFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIG 67

Query: 370 LSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAE 429
           L L +N +T++      L     +  L +  N +         +++  G ++++ L L  
Sbjct: 68  LELKDNQITDLAP----LKNLTKITELELSGNPLKN-------VSAIAGLQSIKTLDLTS 116

Query: 430 CKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFC 489
            ++    P  +  L  LQVL L  NQ+T   P  L  +++L ++   N  +S        
Sbjct: 117 TQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL--TPLA 170

Query: 490 RLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLL 549
            L  LT                     +N I +   + +                     
Sbjct: 171 NLSKLT-------------TLKA---DDNKISDISPLASLPN------------------ 196

Query: 550 LHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFL 598
           L  + L +N  S   P  ++  +NL  + L+   ++ +       L   
Sbjct: 197 LIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 47/267 (17%), Positives = 86/267 (32%), Gaps = 56/267 (20%)

Query: 337 LNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVL 396
             +  +   +   ++ +    +     L  ++ LS     +T I G    +    NL  L
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEG----VQYLNNLIGL 68

Query: 397 IIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQL 456
            +  N + +       L        +  L L+   LK    S I  L+ ++ LDL+  Q+
Sbjct: 69  ELKDNQITD-------LAPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQI 119

Query: 457 TGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGS 516
           T   P  L  +S+L  +    N I+         L  L                S+    
Sbjct: 120 TDVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQ-------------YLSI---G 159

Query: 517 NNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLER 576
           N  + +   +    +                  L  L    N  S +I   ++ L NL  
Sbjct: 160 NAQVSDLTPLANLSK------------------LTTLKADDNKIS-DISP-LASLPNLIE 199

Query: 577 MDLSKNHLSGEIPVS-LKRLHFLSAFN 602
           + L  N +S   P++    L  ++  N
Sbjct: 200 VHLKNNQISDVSPLANTSNLFIVTLTN 226

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  100 bits (252), Expect = 7e-23
 Identities = 64/310 (20%), Positives = 95/310 (30%), Gaps = 64/310 (20%)

Query: 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFN 230
                 +          VP G+ +    +      N +     +       LE L LS N
Sbjct: 42  SNQFSKVICVRKNLRE-VPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 231 HISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLK 289
           HI  +I+ G    L +L  LEL+ N LT +       L+ L+ L L NN +      +  
Sbjct: 99  HIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157

Query: 290 NCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLA 349
              +L  L+L        IS   F  L  LR L+L        +P  L     L  ++L+
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLS 215

Query: 350 RNQLEGQISPGIVA-LKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMP 408
            N L   I PG    L  L  L +  + +  I                            
Sbjct: 216 GNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVI---------------------------- 246

Query: 409 DNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMS 468
                   N F NL                     + L  ++L+ N LT         + 
Sbjct: 247 ------ERNAFDNL---------------------QSLVEINLAHNNLTLLPHDLFTPLH 279

Query: 469 SLFHIDFSNN 478
            L  I   +N
Sbjct: 280 HLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.9 bits (231), Expect = 3e-20
 Identities = 58/254 (22%), Positives = 87/254 (34%), Gaps = 37/254 (14%)

Query: 244 TSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNF 303
           T+ R+L L+ N +  +       L +LE L L  N +      +     NL  L L  N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 304 FEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLAR-NQLEGQISPGIV 362
               I    F  L KL+ L L +N          N   SL  ++L    +L   IS G  
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAF 181

Query: 363 A-LKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKN 421
             L +L +L+L+  +L  I                           P+   L        
Sbjct: 182 EGLSNLRYLNLAMCNLREI---------------------------PNLTPLI------K 208

Query: 422 LQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481
           L  L L+   L    P     L  LQ L +  +Q+         N+ SL  I+ ++N ++
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

Query: 482 GEFPKEFCRLPALT 495
                 F  L  L 
Sbjct: 269 LLPHDLFTPLHHLE 282

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.5 bits (230), Expect = 4e-20
 Identities = 71/311 (22%), Positives = 116/311 (37%), Gaps = 61/311 (19%)

Query: 70  CDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLS 129
           C  + + S +    K L     +  G  T+   LNL  N++                 + 
Sbjct: 39  CSCSNQFSKVICVRKNLR---EVPDGISTNTRLLNLHENQIQ---------------IIK 80

Query: 130 SNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP 189
            N F+      I +L++N I   +   +F GL           ++  L+L +NR T  +P
Sbjct: 81  VNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLA----------NLNTLELFDNRLTT-IP 128

Query: 190 LGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGI-VNLTSLRI 248
            G             F YL           + L++L L  N I  SI +     + SLR 
Sbjct: 129 NGA------------FVYL-----------SKLKELWLRNNPIE-SIPSYAFNRIPSLRR 164

Query: 249 LELYS-NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGD 307
           L+L     L+ +       L+NL  L L   +L   +P +L   I L  L+L  N     
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA- 221

Query: 308 ISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA-LKS 366
           I   +F  L+ L+ L +  +          ++ +SL  +NLA N L   +   +   L  
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHH 280

Query: 367 LSFLSLSNNSL 377
           L  + L +N  
Sbjct: 281 LERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 58/296 (19%), Positives = 94/296 (31%), Gaps = 50/296 (16%)

Query: 342 SLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLN 401
             + V   R  L  ++  GI    +   L+L  N +  I          ++L++L +  N
Sbjct: 44  QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKV--NSFKHLRHLEILQLSRN 98

Query: 402 FMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVP 461
            +           + NG  NL  L L + +L          L KL+ L L  N +     
Sbjct: 99  HIRTIEIG-----AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153

Query: 462 RFLGNMSSLFHIDFS-NNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFI 520
                + SL  +D      +S      F  L  L                 L     N  
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR---------------YLNLAMCNL- 197

Query: 521 GEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLS 580
              ++I                  L++L    LDLS N+ S   P     L +L+++ + 
Sbjct: 198 ---REIPNLT-------------PLIKL--DELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 581 KNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSS---SFRGNPDLC 633
           ++ +      +   L  L   N+A NNL   +P    F             NP  C
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLT-LLP-HDLFTPLHHLERIHLHHNPWNC 293

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.8 bits (249), Expect = 2e-22
 Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 12/232 (5%)

Query: 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSF 229
             + R+L+L  N               L+  + G N +   +    +    SL  L L  
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 230 NHISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVL-HNNSLSGSLPSS 287
           N ++  I +G    L+ LR L L +N +  +      ++ +L  L L     L      +
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 288 LKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVN 347
            +   NL  LNL     +    + N + L+ L  L++  N F    P + +   SL  + 
Sbjct: 192 FEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 348 LARNQLEGQISPG-IVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLII 398
           +  +Q+   I       L SL  L+L++N+L+++     +    + L  L +
Sbjct: 249 VMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPH--DLFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.4 bits (248), Expect = 2e-22
 Identities = 63/308 (20%), Positives = 94/308 (30%), Gaps = 64/308 (20%)

Query: 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHI 232
               +  +    +  VP G+ S    +      N +     D       LE L L  N I
Sbjct: 55  QFSKVVCTRRGLSE-VPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 233 SGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNC 291
              I+ G    L SL  LEL+ N LT +       L+ L  L L NN +      +    
Sbjct: 112 R-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 292 INLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARN 351
            +L  L+L        IS   F  L  L+ L+LG       +P  L     L  + ++ N
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGN 228

Query: 352 QLEGQISPG-IVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDN 410
               +I PG    L SL  L + N+ ++ I                              
Sbjct: 229 HFP-EIRPGSFHGLSSLKKLWVMNSQVSLI------------------------------ 257

Query: 411 DRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSL 470
                 N F  L                       L  L+L+ N L+         +  L
Sbjct: 258 ----ERNAFDGL---------------------ASLVELNLAHNNLSSLPHDLFTPLRYL 292

Query: 471 FHIDFSNN 478
             +   +N
Sbjct: 293 VELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 93.7 bits (233), Expect = 2e-20
 Identities = 60/284 (21%), Positives = 103/284 (36%), Gaps = 60/284 (21%)

Query: 98  THLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNS 157
           ++  +LNL  N +                 + ++ F+      + +L +N I   +   +
Sbjct: 75  SNTRYLNLMENNIQ---------------MIQADTFRHLHHLEVLQLGRNSIR-QIEVGA 118

Query: 158 FTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAG-FNYLTGSLPDDI 216
           F GL           S+  L+L +N               L    +G F YL        
Sbjct: 119 FNGLA----------SLNTLELFDN--------------WLTVIPSGAFEYL-------- 146

Query: 217 YTATSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYS-NSLTGLIPRDIGKLTNLESLV 274
              + L +L L  N I  SI +     + SL  L+L     L  +       L NL+ L 
Sbjct: 147 ---SKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202

Query: 275 LHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLP 334
           L   ++   +P +L   + L  L +  N F  +I   +F  L  L+ L + ++  +    
Sbjct: 203 LGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 335 ITLNSCKSLTAVNLARNQLEGQISPGIVA-LKSLSFLSLSNNSL 377
              +   SL  +NLA N L   +   +   L+ L  L L +N  
Sbjct: 260 NAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.8 bits (223), Expect = 3e-19
 Identities = 47/234 (20%), Positives = 77/234 (32%), Gaps = 32/234 (13%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN 155
           +L HL  L L  N +                 +    F G        L  N +T  + +
Sbjct: 97  HLHHLEVLQLGRNSIR---------------QIEVGAFNGLASLNTLELFDNWLT-VIPS 140

Query: 156 NSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFR-AGFNYLTGSLPD 214
            +F  L            +R L L NN               L          L   + +
Sbjct: 141 GAFEYLS----------KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISE 189

Query: 215 DIYTA-TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESL 273
             +    +L+ L+L   +I   + N +  L  L  LE+  N    + P     L++L+ L
Sbjct: 190 GAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSN 327
            + N+ +S    ++     +L  LNL  N     +    F+ L  L  L L  N
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 59/322 (18%), Positives = 92/322 (28%), Gaps = 78/322 (24%)

Query: 318 KLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI-VALKSLSFLSLSNNS 376
           +   +       +  +P  + S  +   +NL  N ++  I       L  L  L L  NS
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIPS--NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 377 LTNIT-GAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQ 435
           +  I  GA                                  G  +L  L L +  L   
Sbjct: 111 IRQIEVGAFN--------------------------------GLASLNTLELFDNWLTVI 138

Query: 436 VPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSN-NLISGEFPKEFCRLPAL 494
                  L KL+ L L  N +          + SL  +D      +       F  L  L
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198

Query: 495 TPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLD 554
                            L  G  N     K +                  L+ L    L+
Sbjct: 199 K---------------YLNLGMCNI----KDMPNLT-------------PLVGL--EELE 224

Query: 555 LSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPS 614
           +S N+F    P     L++L+++ +  + +S     +   L  L   N+A NNL  S+P 
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLP- 282

Query: 615 GGQFDTFPSS---SFRGNPDLC 633
              F             NP  C
Sbjct: 283 HDLFTPLRYLVELHLHHNPWNC 304

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.1 bits (237), Expect = 7e-22
 Identities = 53/210 (25%), Positives = 75/210 (35%), Gaps = 6/210 (2%)

Query: 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFN 230
             + + + L  NR +        +C  L       N L             LEQL LS N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 231 HISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPS-SL 288
               S+       L  L  L L    L  L P     L  L+ L L +N+L  +LP  + 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149

Query: 289 KNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNL 348
           ++  NLT L L  N     +    F  L  L  L L  N      P        L  + L
Sbjct: 150 RDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 349 ARNQLEGQISPGIVA-LKSLSFLSLSNNSL 377
             N L   +    +A L++L +L L++N  
Sbjct: 209 FANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 24/233 (10%)

Query: 253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFN 312
              L   +P  I      + + LH N +S    +S + C NLT+L L SN     I    
Sbjct: 20  QQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAA 75

Query: 313 FSTLLKLRVLDLGSNLFTGSLPI-TLNSCKSLTAVNLARNQLEGQISPGI-VALKSLSFL 370
           F+ L  L  LDL  N    S+   T +    L  ++L R  L+ ++ PG+   L +L +L
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYL 134

Query: 371 SLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTS--ANGFK---NLQVL 425
            L +N+L  +           NL  L +  N          R++S     F+   +L  L
Sbjct: 135 YLQDNALQAL--PDDTFRDLGNLTHLFLHGN----------RISSVPERAFRGLHSLDRL 182

Query: 426 GLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478
            L + ++    P     L +L  L L  N L+      L  + +L ++  ++N
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.4 bits (225), Expect = 3e-20
 Identities = 47/238 (19%), Positives = 81/238 (34%), Gaps = 12/238 (5%)

Query: 119 SSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLD 178
            +             Q  +P  I   +Q +    +  N  + + + S    +  ++  L 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIPAASQRI---FLHGNRISHVPAASFR--ACRNLTILW 62

Query: 179 LSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNHISGSIK 237
           L +N             + L+      N    S+    +     L  L L    +   + 
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELG 121

Query: 238 NGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTL 296
            G+   L +L+ L L  N+L  L       L NL  L LH N +S     + +   +L  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 297 LNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPI-TLNSCKSLTAVNLARNQL 353
           L L  N     +    F  L +L  L L +N  + +LP   L   ++L  + L  N  
Sbjct: 182 LLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 7e-16
 Identities = 42/234 (17%), Positives = 77/234 (32%), Gaps = 54/234 (23%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN 155
              +L+ L L  N L+                + +  F G        L+ N    +V  
Sbjct: 54  ACRNLTILWLHSNVLA---------------RIDAAAFTGLALLEQLDLSDNAQLRSVDP 98

Query: 156 NSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDD 215
            +F GL            +  L L                                L   
Sbjct: 99  ATFHGLG----------RLHTLHLDRCGLQ-------------------------ELGPG 123

Query: 216 IYTA-TSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLESL 273
           ++    +L+ L L  N +  ++ +    +L +L  L L+ N ++ +  R    L +L+ L
Sbjct: 124 LFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSN 327
           +LH N ++   P + ++   L  L L +N     +     + L  L+ L L  N
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 35/187 (18%), Positives = 55/187 (29%), Gaps = 78/187 (41%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN 155
            L  L +L L  N L                          +P   FR   NL       
Sbjct: 127 GLAALQYLYLQDNALQ------------------------ALPDDTFRDLGNL------- 155

Query: 156 NSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDD 215
                               HL L  NR +                         S+P+ 
Sbjct: 156 -------------------THLFLHGNRIS-------------------------SVPER 171

Query: 216 IYTA-TSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLESL 273
            +    SL++L L  N ++  +      +L  L  L L++N+L+ L    +  L  L+ L
Sbjct: 172 AFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230

Query: 274 VLHNNSL 280
            L++N  
Sbjct: 231 RLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 46/221 (20%), Positives = 74/221 (33%), Gaps = 40/221 (18%)

Query: 418 GFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFN-QLTGSVPRFLGNMSSLFHIDFS 476
             +NL +L L    L     +    L  L+ LDLS N QL    P     +  L  +   
Sbjct: 54  ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 477 NNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWK 536
              +    P  F  L AL                 L+   N                  +
Sbjct: 114 RCGLQELGPGLFRGLAALQ---------------YLYLQDNAL----------------Q 142

Query: 537 TTASAAVSLLRLLLHMLDLSHNNFSGNIPDQI-SQLTNLERMDLSKNHLSGEIPVSLKRL 595
                    L  L H L L  N  S ++P++    L +L+R+ L +N ++   P + + L
Sbjct: 143 ALPDDTFRDLGNLTH-LFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 596 HFLSAFNVAENNLRGSIPSGGQFDTFPSSSF---RGNPDLC 633
             L    +  NNL  ++P+        +  +     NP +C
Sbjct: 201 GRLMTLYLFANNLS-ALPT-EALAPLRALQYLRLNDNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 36/212 (16%), Positives = 58/212 (27%), Gaps = 40/212 (18%)

Query: 409 DNDRLTS--ANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGN 466
               L +         Q + L   ++     +     + L +L L  N L          
Sbjct: 19  PQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78

Query: 467 MSSLFHIDFSNNLISGEFPKE-FCRLPALTP-EQDKNKANESYLEFSLFKGSNNFIGEYK 524
           ++ L  +D S+N          F  L  L     D+       L   LF+G         
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAA------ 130

Query: 525 KILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQI-SQLTNLERMDLSKNH 583
                                    L  L L  N     +PD     L NL  + L  N 
Sbjct: 131 -------------------------LQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNR 164

Query: 584 LSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG 615
           +S     + + LH L    + +N +   +   
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVA-HVHPH 195

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 93.6 bits (233), Expect = 6e-21
 Identities = 65/319 (20%), Positives = 110/319 (34%), Gaps = 44/319 (13%)

Query: 70  CDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDL 128
           CD NG           L    S+  G    +  L+LS+NR++    S L     ++ + L
Sbjct: 30  CDRNGICK---GSSGSLN---SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVL 83

Query: 129 SSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPV 188
           +SN     I    F    +L   ++S N  + L S  +W     S+  L+L  N +    
Sbjct: 84  TSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSS--SWFKPLSSLTFLNLLGNPYKTLG 140

Query: 189 PLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGI-VNLTSLR 247
              L            F++LT            L+ L +        I+      LT L 
Sbjct: 141 ETSL------------FSHLT-----------KLQILRVGNMDTFTKIQRKDFAGLTFLE 177

Query: 248 ILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEG- 306
            LE+ ++ L    P+ +  + N+  L+LH       L   +    ++  L L+    +  
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 307 ------DISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG 360
                      +       R + +        +   LN    L  +  +RNQL+  +  G
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDG 295

Query: 361 IVA-LKSLSFLSLSNNSLT 378
           I   L SL  + L  N   
Sbjct: 296 IFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 62/315 (19%), Positives = 114/315 (36%), Gaps = 38/315 (12%)

Query: 272 SLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG 331
                + SL+ S+PS L     +  L+L +N     IS  +    + L+ L L SN    
Sbjct: 35  ICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINT 90

Query: 332 SLPITLNSCKSLTAVNLARNQLEGQISPGI-VALKSLSFLSLSNNSLTNITGAIRILMGC 390
               + +S  SL  ++L+ N L   +S      L SL+FL+L  N    + G   +    
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHL 148

Query: 391 KNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLD 450
             L++L +        +   D      G   L+ L +    L+   P  +  ++ +  L 
Sbjct: 149 TKLQILRVGNMDTFTKIQRKD----FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204

Query: 451 LSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEF 510
           L   Q    +  F+   SS+  ++  +  +       F  L          K     ++ 
Sbjct: 205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDT---FHFSELSTGETNSLIKKFTFRNVKI 261

Query: 511 SLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQI-S 569
                ++  + +  K+L                      L  L+ S N    ++PD I  
Sbjct: 262 -----TDESLFQVMKLLNQISG-----------------LLELEFSRNQLK-SVPDGIFD 298

Query: 570 QLTNLERMDLSKNHL 584
           +LT+L+++ L  N  
Sbjct: 299 RLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 45/297 (15%), Positives = 88/297 (29%), Gaps = 47/297 (15%)

Query: 343 LTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNF 402
                +     E   +   ++         S+ SL +I   +      + +K L +  N 
Sbjct: 9   WVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGL-----TEAVKSLDLSNNR 63

Query: 403 MDETMPDN-DRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVP 461
           +      +  R        NLQ L L    +          L  L+ LDLS+N L+    
Sbjct: 64  ITYISNSDLQRCV------NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117

Query: 462 RFLGNMSSLFHIDFSNNLISGEFPKE-FCRLPALTPEQDKNKANESYLEFSLFKGSNNFI 520
            +   +SSL  ++   N          F  L  L   +  N    + ++   F G     
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG----- 172

Query: 521 GEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLS 580
                 LTF                    L  L++  ++     P  +  + N+  + L 
Sbjct: 173 ------LTF--------------------LEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 581 KNHLSGEIPVSLKRLHFLSAFNVAENNLRG---SIPSGGQFDTFPSSSFRGNPDLCG 634
                  + + +     +    + + +L     S  S G+ ++        N  +  
Sbjct: 207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 90.7 bits (225), Expect = 3e-20
 Identities = 48/296 (16%), Positives = 91/296 (30%), Gaps = 36/296 (12%)

Query: 95  GNLTHLSHLNLSHNRLSGEFPSSLSSNYIKI--IDLSSNHFQGKIPSTIFRLTQ--NLIT 150
           G    L +L    +  +     +     + +  + + +     +I     R+     L  
Sbjct: 40  GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99

Query: 151 FNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG 210
             + N   TG         +   +  L+L N  +                     +    
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT------------------RDAWLA 141

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDI----GK 266
            L    +    L+ LS++  H        +    +L  L+L  N   G           K
Sbjct: 142 ELQQ--WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 267 LTNLESLVLHNN---SLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLD 323
              L+ L L N    + SG   +     + L  L+L  N         +     +L  L+
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 324 LGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTN 379
           L        +P  L +   L+ ++L+ N+L+   +P    L  +  LSL  N   +
Sbjct: 260 LSFTGLK-QVPKGLPA--KLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.1 bits (200), Expect = 6e-17
 Identities = 61/263 (23%), Positives = 95/263 (36%), Gaps = 32/263 (12%)

Query: 215 DIYTATSLEQLSLSFNHISGSIKNGIV---NLTSLRILELYSNSLTGLIPRDIGKLT--N 269
           DI  + SL++L++    I   I  G +    ++ L+ L L +  +TG  P  + + T  +
Sbjct: 63  DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122

Query: 270 LESLVLHNNSLSG--SLPSSLKNCINLTL--LNLQSNFFEGDISVFNFSTLLKLRVLDLG 325
           L  L L N S +   +  + L+  +   L  L++       + S         L  LDL 
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLS 181

Query: 326 SNLFTGSLPITLNSC----KSLTAVNLARNQLE---GQISPGIVALKSLSFLSLSNNSLT 378
            N   G   +    C     +L  + L    +E   G  S    A   L  L LS+NSL 
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241

Query: 379 NITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTS--ANGFKNLQVLGLAECKLKGQV 436
           +  GA         L  L +              L          L VL L+  +L    
Sbjct: 242 DAAGAPSCDW-PSQLNSLNLSFT----------GLKQVPKGLPAKLSVLDLSYNRLDR-N 289

Query: 437 PSWIGKLKKLQVLDLSFNQLTGS 459
           PS   +L ++  L L  N    S
Sbjct: 290 PS-PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 32/175 (18%), Positives = 53/175 (30%), Gaps = 13/175 (7%)

Query: 91  SLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNY--IKIIDLSSNHFQGKIP---STIFRLT 145
            L       L  L+++       F       +  +  +DLS N   G+     +      
Sbjct: 142 ELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200

Query: 146 QNLITFNVSNNSFTGL-ISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRA 203
             L    + N          SA   +   ++ LDLS+N              S+L +   
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 204 GFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTG 258
            F  L   +P  +     L  L LS+N +  +       L  +  L L  N    
Sbjct: 261 SFTGLK-QVPKGL--PAKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 54/323 (16%), Positives = 89/323 (27%), Gaps = 55/323 (17%)

Query: 278 NSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLP--- 334
           N L  +         +L  L  + +         +    L L+ L + +      +    
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 335 ITLNSCKSLTAVNLARNQLEGQISPGIVAL--KSLSFLSLSNNSLTNITGAIRILMGC-- 390
           + +     L  + L   ++ G   P ++      L+ L+L N S       +  L     
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 391 KNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWI----GKLKKL 446
             LKVL I                    F  L  L L++    G+          K   L
Sbjct: 149 PGLKVLSIAQAHSL-NFSCE----QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

Query: 447 QVLDLSFNQLT---GSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKA 503
           QVL L    +    G           L  +D S+N +        C  P          +
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP----------S 253

Query: 504 NESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGN 563
             + L       S   + +  K L                      L +LDLS+N     
Sbjct: 254 QLNSLNL-----SFTGLKQVPKGLPAK-------------------LSVLDLSYNRLDR- 288

Query: 564 IPDQISQLTNLERMDLSKNHLSG 586
            P    +L  +  + L  N    
Sbjct: 289 NPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 10/104 (9%)

Query: 86  LTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNY--IKIIDLSSNHFQGKIPSTIFR 143
            +G  S        L  L+LSHN L     +        +  ++LS    + ++P  +  
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273

Query: 144 LTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGP 187
               L   ++S N      S     D    + +L L  N F   
Sbjct: 274 --AKLSVLDLSYNRLDRNPS----PDELPQVGNLSLKGNPFLDS 311

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 90.0 bits (224), Expect = 3e-19
 Identities = 81/397 (20%), Positives = 134/397 (33%), Gaps = 69/397 (17%)

Query: 70  CDANGRVSHLWLPWKGLTGT----ISLSIGNLTHLSHLNLSHNRLSGEFPSSLS------ 119
                +   + L   GLT      IS ++     L+ LNL  N L       +       
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83

Query: 120 SNYIKIIDLSSNHFQG---KIPSTIFRLTQNLITFNVSNNSFT--GLISWS-AWVDSFCS 173
           S  I+ + L +    G    + S+  R    L   ++S+N     GL       +D  C 
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 174 IRHLDLSNNRFT--GPVPLG--LGSCSRLKTFR--------AGFNYLTGSLPDDIYTATS 221
           +  L L     +     PL   L +    K           AG   L   L D   +   
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD---SPCQ 200

Query: 222 LEQLSLSFNHIS----GSIKNGIVNLTSLRILELYSNSLTG-----LIPRDIGKLTNLES 272
           LE L L    ++      +   + +  SLR L L SN L       L P  +   + L +
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260

Query: 273 LVLHNNSLS----GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLK-----LRVLD 323
           L +    ++    G L   L+   +L  L+L  N   GD         L      L  L 
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-GDEGARLLCETLLEPGCQLESLW 319

Query: 324 LGSNLFTG----SLPITLNSCKSLTAVNLARNQLEGQISPGIVAL--------KSLSFLS 371
           + S  FT          L   + L  + ++ N+LE     G+  L          L  L 
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE---DAGVRELCQGLGQPGSVLRVLW 376

Query: 372 LSNNSLTNITGAIRI---LMGCKNLKVLIIPLNFMDE 405
           L++  +++ +    +   L+   +L+ L +  N + +
Sbjct: 377 LADCDVSD-SSCSSLAATLLANHSLRELDLSNNCLGD 412

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.8 bits (213), Expect = 7e-18
 Identities = 72/394 (18%), Positives = 127/394 (32%), Gaps = 63/394 (15%)

Query: 144 LTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFT----GPVPLGLGSCSRLK 199
           ++ ++ + ++          W+  +      + + L +   T      +   L     L 
Sbjct: 1   MSLDIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 200 TFRAGFNYLTGSLPDDIYTA-----TSLEQLSLSFNHIS----GSIKNGIVNLTSLRILE 250
                 N L       +          +++LSL    ++    G + + +  L +L+ L 
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 251 LYSNSLTGLIPRDIGKL-----TNLESLVLHNNSLS----GSLPSSLKNCINLTLLNLQS 301
           L  N L     + + +        LE L L   SLS      L S L+   +   L + +
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 302 NFFEGDISVFNFSTLLK-----LRVLDLGSNLFT----GSLPITLNSCKSLTAVNLARNQ 352
           N    +  V      LK     L  L L S   T      L   + S  SL  + L  N+
Sbjct: 180 NDI-NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 353 LEGQISPGIVAL--------KSLSFLSLSNNSLTNITGAIRI---LMGCKNLKVLIIPLN 401
           L      G+  L          L  L +    +T   G   +   L   ++LK L +  N
Sbjct: 239 LGDV---GMAELCPGLLHPSSRLRTLWIWECGITA-KGCGDLCRVLRAKESLKELSLAGN 294

Query: 402 FM-DETMPDNDRLTSA--NGFKNLQVLGLAECKLKGQ----VPSWIGKLKKLQVLDLSFN 454
            + DE       L          L+ L +  C           S + + + L  L +S N
Sbjct: 295 ELGDEGAR---LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351

Query: 455 QLTGSVPRFLG-----NMSSLFHIDFSNNLISGE 483
           +L  +  R L        S L  +  ++  +S  
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.8 bits (182), Expect = 4e-14
 Identities = 73/481 (15%), Positives = 141/481 (29%), Gaps = 119/481 (24%)

Query: 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHI 232
            I+ LD+     +                 A +  L   L          + + L    +
Sbjct: 4   DIQSLDIQCEELSD----------------ARWAELLPLL-------QQCQVVRLDDCGL 40

Query: 233 S----GSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKL-----TNLESLVLHNNSLS-- 281
           +      I + +    +L  L L SN L  +    + +        ++ L L N  L+  
Sbjct: 41  TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100

Query: 282 --GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLL-----KLRVLDLGSNLFT---- 330
             G L S+L+    L  L+L  N   GD  +      L     +L  L L     +    
Sbjct: 101 GCGVLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159

Query: 331 GSLPITLNSCKSLTAVNLARNQLEGQ----ISPGIVALK-SLSFLSLSNNSLTNITGAIR 385
             L   L +      + ++ N +       +  G+      L  L L +  +T+      
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS-DNCRD 218

Query: 386 I---LMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGK 442
           +   +    +L+ L +                 +N   ++ +  L    L          
Sbjct: 219 LCGIVASKASLRELAL----------------GSNKLGDVGMAELCPGLLHPS------- 255

Query: 443 LKKLQVLDLSFNQLT----GSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQ 498
             +L+ L +    +T    G + R L    SL  +  + N +  E  +  C    L    
Sbjct: 256 -SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE--TLL--- 309

Query: 499 DKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLL--LHMLDLS 556
              +         +    +                      S   S+L     L  L +S
Sbjct: 310 ---EPGCQLESLWV---KSCSFTA--------------ACCSHFSSVLAQNRFLLELQIS 349

Query: 557 HNNFSGNIPDQISQL-----TNLERMDLSKNHLSGE----IPVSLKRLHFLSAFNVAENN 607
           +N        ++ Q      + L  + L+   +S      +  +L   H L   +++ N 
Sbjct: 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409

Query: 608 L 608
           L
Sbjct: 410 L 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.5 bits (176), Expect = 3e-13
 Identities = 63/341 (18%), Positives = 103/341 (30%), Gaps = 76/341 (22%)

Query: 90  ISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLI 149
           ++  +        L +S+N ++      L         L  +                L 
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQ------GLKDSPC-------------QLE 202

Query: 150 TFNVSNNSFT--GLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNY 207
              + +   T          V S  S+R L L +N+                    G   
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD----------------VGMAE 246

Query: 208 LTGSLPDDIYTATSLEQLSLSFNHIS----GSIKNGIVNLTSLRILELYSNSLT-----G 258
           L   L   ++ ++ L  L +    I+    G +   +    SL+ L L  N L       
Sbjct: 247 LCPGL---LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303

Query: 259 LIPRDIGKLTNLESLVLHNNSLSG----SLPSSLKNCINLTLLNLQSNFFEGDISVFNFS 314
           L    +     LESL + + S +        S L     L  L + +N    D  V    
Sbjct: 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL-EDAGVRELC 362

Query: 315 TLLK-----LRVLDLGSNLFT----GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALK 365
             L      LRVL L     +     SL  TL +  SL  ++L+ N L      GI+ L 
Sbjct: 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA---GILQLV 419

Query: 366 --------SLSFLSLSNNSLTNITGAI--RILMGCKNLKVL 396
                    L  L L +   +         +     +L+V+
Sbjct: 420 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.8 bits (174), Expect = 5e-13
 Identities = 76/392 (19%), Positives = 130/392 (33%), Gaps = 86/392 (21%)

Query: 244 TSLRILELYSNSLTGLIPRDIGK-LTNLESLVLHNNSLS----GSLPSSLKNCINLTLLN 298
             ++ L++    L+     ++   L   + + L +  L+      + S+L+    L  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 299 LQSNFFEGDISVFNFSTLLK-----LRVLDLGSNLFT----GSLPITLNSCKSLTAVNLA 349
           L+SN   GD+ V      L+     ++ L L +   T    G L  TL +  +L  ++L+
Sbjct: 63  LRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 350 RNQLEGQISPGIVAL--------KSLSFLSLSNNSLTNITGAIRI---LMGCKNLKVLII 398
            N L      G+  L          L  L L   SL+       +   L    + K L +
Sbjct: 122 DNLLG---DAGLQLLCEGLLDPQCRLEKLQLEYCSLSA-ASCEPLASVLRAKPDFKELTV 177

Query: 399 PLNFMDETMPDNDRLTSANGFK----NLQVLGLAECKLKGQVPSWIG----KLKKLQVLD 450
             N ++    +        G K     L+ L L  C +       +         L+ L 
Sbjct: 178 SNNDIN----EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233

Query: 451 LSFNQLTGSVPRFLGNM-----SSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANE 505
           L  N+L       L        S L  +      I+ +   + CR   L       +A E
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR--VL-------RAKE 284

Query: 506 SYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLL------LHMLDLSHNN 559
           S  E SL   + N +G+                   A  L   L      L  L +   +
Sbjct: 285 SLKELSL---AGNELGD-----------------EGARLLCETLLEPGCQLESLWVKSCS 324

Query: 560 FSG----NIPDQISQLTNLERMDLSKNHLSGE 587
           F+     +    ++Q   L  + +S N L   
Sbjct: 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 87.4 bits (217), Expect = 4e-19
 Identities = 48/243 (19%), Positives = 89/243 (36%), Gaps = 32/243 (13%)

Query: 242 NLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQS 301
                    L   S+T  +     +L +++ ++ +N+ +  S+   ++   N+T L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77

Query: 302 NFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPIT----LNSCKSLTAVNLARNQLEGQI 357
           N       +   + L  L  L L  N       +     L   K L +++L  N +   I
Sbjct: 78  NKLT---DIKPLANLKNLGWLFLDEN------KVKDLSSLKDLKKLKSLSLEHNGIS-DI 127

Query: 358 SPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSAN 417
           +  +V L  L  L L NN +T+IT     L     L  L +  N + +       +    
Sbjct: 128 NG-LVHLPQLESLYLGNNKITDITV----LSRLTKLDTLSLEDNQISD-------IVPLA 175

Query: 418 GFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSN 477
           G   LQ L L++  +       +  LK L VL+L   +          N+     +  ++
Sbjct: 176 GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

Query: 478 NLI 480
             +
Sbjct: 234 GSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 17/213 (7%)

Query: 169 DSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLS 228
           D+F      +L     T  V       + +    A  + +  S+   I    ++ +L L+
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLN 76

Query: 229 FNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL 288
            N ++  IK  + NL +L  L L  N +  L    +  L  L+SL L +N +S  + + L
Sbjct: 77  GNKLT-DIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DI-NGL 130

Query: 289 KNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNL 348
            +   L  L L +N    DI+    S L KL  L L  N  +  +   L     L  + L
Sbjct: 131 VHLPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYL 185

Query: 349 ARNQLEGQISPGIVALKSLSFLSLSNNSLTNIT 381
           ++N +   +   +  LK+L  L L +    N  
Sbjct: 186 SKNHIS-DLRA-LAGLKNLDVLELFSQECLNKP 216

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 42/199 (21%), Positives = 77/199 (38%), Gaps = 28/199 (14%)

Query: 286 SSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTA 345
            S          NL+             + L  +  +   ++         +    ++T 
Sbjct: 18  FSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTK 72

Query: 346 VNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDE 405
           + L  N+L   I P +  LK+L +L L  N + +++     L   K LK L +       
Sbjct: 73  LFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSS----LKDLKKLKSLSL------- 119

Query: 406 TMPDNDRLTSANGF---KNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPR 462
              +++ ++  NG      L+ L L   K+     + + +L KL  L L  NQ++  VP 
Sbjct: 120 ---EHNGISDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP- 173

Query: 463 FLGNMSSLFHIDFSNNLIS 481
            L  ++ L ++  S N IS
Sbjct: 174 -LAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 51/264 (19%), Positives = 98/264 (37%), Gaps = 21/264 (7%)

Query: 96  NLTHLSHLNLSHNRLSG-EFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVS 154
                   NL    ++     + L+S  I  I  +++  +  +   I  L  N+    ++
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIK-SV-QGIQYLP-NVTKLFLN 76

Query: 155 NNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPD 214
            N  T +      + +  ++  L L  N+        L    +LK+     N ++  + +
Sbjct: 77  GNKLTDIKP----LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DI-N 128

Query: 215 DIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLV 274
            +     LE L L  N I+  I   +  LT L  L L  N ++ ++P  +  LT L++L 
Sbjct: 129 GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 184

Query: 275 LHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLP 334
           L  N +S  L  +L    NL +L L S     +  + + S L+    +            
Sbjct: 185 LSKNHIS-DL-RALAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSLVTPEI 241

Query: 335 ITLNSCKSLTAVNLARNQLEGQIS 358
           I+ +       V     +   ++S
Sbjct: 242 ISDDGDYEKPNVKWHLPEFTNEVS 265

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 48/248 (19%), Positives = 86/248 (34%), Gaps = 22/248 (8%)

Query: 76  VSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQG 135
                L  K +T  ++ +   L  +  +  +++ +          N +  + L+ N    
Sbjct: 26  TIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYLPN-VTKLFLNGNKL-- 80

Query: 136 KIPSTIFRLTQ--NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLG 193
              + I  L    NL    +  N    L S    +     ++ L L +N  +     GL 
Sbjct: 81  ---TDIKPLANLKNLGWLFLDENKVKDLSS----LKDLKKLKSLSLEHNGIS--DINGLV 131

Query: 194 SCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS 253
              +L++   G N +T      +   T L+ LSL  N IS  I   +  LT L+ L L  
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSK 187

Query: 254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNF 313
           N ++ L  R +  L NL+ L L +        +   N +    +            + + 
Sbjct: 188 NHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 245

Query: 314 STLLKLRV 321
               K  V
Sbjct: 246 GDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 53/299 (17%), Positives = 97/299 (32%), Gaps = 79/299 (26%)

Query: 310 VFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSF 369
           +F+     +    +L     T    +T N   S+  +    + ++  +  GI  L +++ 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTK 72

Query: 370 LSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAE 429
           L L+ N LT+I      L   KNL  L +  N          ++   +  K+L       
Sbjct: 73  LFLNGNKLTDIKP----LANLKNLGWLFLDEN----------KVKDLSSLKDL------- 111

Query: 430 CKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFC 489
                         KKL+ L L  N ++      L ++  L  +   NN I+        
Sbjct: 112 --------------KKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITD--ITVLS 153

Query: 490 RLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLL 549
           RL  L                SL    +N I +   +    +                  
Sbjct: 154 RLTKLD-------------TLSL---EDNQISDIVPLAGLTK------------------ 179

Query: 550 LHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNL 608
           L  L LS N+ S ++   ++ L NL+ ++L       +       L   +     + +L
Sbjct: 180 LQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 18/204 (8%)

Query: 94  IGNLTHLSHLNLSHNRLSG-EFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQ--NLIT 150
           + NL +L  L L  N++        L    +K + L  N       S I  L     L +
Sbjct: 86  LANLKNLGWLFLDENKVKDLSSLKDLKK--LKSLSLEHNGI-----SDINGLVHLPQLES 138

Query: 151 FNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG 210
             + NN  T +      +     +  L L +N+ +  VPL     ++L+      N+++ 
Sbjct: 139 LYLGNNKITDITV----LSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHIS- 191

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
            L   +    +L+ L L          N   NL     ++    SL              
Sbjct: 192 DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 250

Query: 271 ESLVLHNNSLSGSLPSSLKNCINL 294
            ++  H    +  +       + +
Sbjct: 251 PNVKWHLPEFTNEVSFIFYQPVTI 274

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.2 bits (214), Expect = 8e-19
 Identities = 55/212 (25%), Positives = 83/212 (39%), Gaps = 15/212 (7%)

Query: 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNH 231
           S ++LDLS N           S   L+        +  ++ D  Y + + L  L L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 232 ISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSS--L 288
           I  S+  G    L+SL+ L     +L  L    IG L  L+ L + +N +  S       
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYF 145

Query: 289 KNCINLTLLNLQSNFFEGDISVFNFSTLLKLRV----LDLGSNLFTGSLPITLNSCKSLT 344
            N  NL  L+L SN  +  I   +   L ++ +    LDL  N     +         L 
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLK 203

Query: 345 AVNLARNQLEGQISPGIVA-LKSLSFLSLSNN 375
            + L  NQL+  +  GI   L SL  + L  N
Sbjct: 204 ELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.9 bits (208), Expect = 5e-18
 Identities = 51/274 (18%), Positives = 92/274 (33%), Gaps = 66/274 (24%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTN 269
            +PD++  +T  + L LSFN +   + +    +   L++L+L    +  +       L++
Sbjct: 21  KIPDNLPFST--KNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 270 LESLVLHNNSLSGSLPSSL-KNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
           L +L+L  N +  SL         +L  L          +  F    L  L+ L++  NL
Sbjct: 78  LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL 135

Query: 329 FTGSLPITLNSCKSLTAVNLARNQLEGQISPGI-VALKSLSFLSLSNNSLTNI-TGAIRI 386
              S                          P     L +L  L LS+N + +I    +R+
Sbjct: 136 IQ-SFK-----------------------LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 387 LMGCKNLKVLIIPLNFMDETMPDNDRLTS--ANGFKNLQVLGLAECKLKGQVPSWIGKLK 444
           L     + +L + L+         + +       FK ++                     
Sbjct: 172 L---HQMPLLNLSLDL------SLNPMNFIQPGAFKEIR--------------------- 201

Query: 445 KLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478
            L+ L L  NQL          ++SL  I    N
Sbjct: 202 -LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 44/238 (18%), Positives = 79/238 (33%), Gaps = 59/238 (24%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN 155
           +   L  L+LS   +                 +    +Q     +   LT N I  +++ 
Sbjct: 50  SFPELQVLDLSRCEIQ---------------TIEDGAYQSLSHLSTLILTGNPIQ-SLAL 93

Query: 156 NSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDD 215
            +F+GL           S++ L                                 SL + 
Sbjct: 94  GAFSGL----------SSLQKLVAVETNLA-------------------------SLENF 118

Query: 216 IYTA-TSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLE-- 271
                 +L++L+++ N I          NLT+L  L+L SN +  +   D+  L  +   
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 272 --SLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSN 327
             SL L  N ++  +       I L  L L +N  +  +    F  L  L+ + L +N
Sbjct: 179 NLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 43/207 (20%), Positives = 77/207 (37%), Gaps = 34/207 (16%)

Query: 78  HLWLPWKGLTGTISLSIG---NLTHLSHLNLSHNRLS---GEFPSSLSSNYIKIIDLSSN 131
            L L    +    ++  G   +L+HLS L L+ N +        S LSS  ++ +     
Sbjct: 56  VLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS--LQKLVAVET 110

Query: 132 HFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLG 191
           +    + +      + L   NV++N          +  +  ++ HLDLS+N+    +   
Sbjct: 111 NLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQS-IYCT 167

Query: 192 LGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILEL 251
                           L   +P           L LS N ++  I+ G      L+ L L
Sbjct: 168 D------------LRVLH-QMP------LLNLSLDLSLNPMN-FIQPGAFKEIRLKELAL 207

Query: 252 YSNSLTGLIPRDIGKLTNLESLVLHNN 278
            +N L  +      +LT+L+ + LH N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 49/269 (18%), Positives = 82/269 (30%), Gaps = 87/269 (32%)

Query: 319 LRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA-LKSLSFLSLSNNSL 377
            + LDL  N        +  S   L  ++L+R +++  I  G    L  LS L L+ N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 378 TNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVP 437
            ++                     F          L+      +LQ L   E  L     
Sbjct: 89  QSLALGA-----------------F--------SGLS------SLQKLVAVETNLASLEN 117

Query: 438 SWIGKLKKLQVLDLSFNQLTG-SVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTP 496
             IG LK L+ L+++ N +    +P +  N+++L H+D S+N I   +  +   L  +  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 497 EQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLS 556
                                                                   LDLS
Sbjct: 178 LNLS----------------------------------------------------LDLS 185

Query: 557 HNNFSGNIPDQISQLTNLERMDLSKNHLS 585
            N  +  I     +   L+ + L  N L 
Sbjct: 186 LNPMN-FIQPGAFKEIRLKELALDTNQLK 213

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.5 bits (207), Expect = 1e-18
 Identities = 23/138 (16%), Positives = 56/138 (40%), Gaps = 6/138 (4%)

Query: 216 IYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVL 275
           I  A +++ L+++  H + +    I  L++L  L +    +T     ++  LT+L  L +
Sbjct: 62  IEYAHNIKDLTINNIHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 276 HNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPI 335
            +++   S+ + +     +  ++L  N    DI      TL +L+ L++  +        
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYRG- 176

Query: 336 TLNSCKSLTAVNLARNQL 353
            +     L  +      +
Sbjct: 177 -IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.1 bits (180), Expect = 5e-15
 Identities = 36/218 (16%), Positives = 72/218 (33%), Gaps = 44/218 (20%)

Query: 242 NLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQS 301
              +     L  +S   +      ++ +L  + L N +++  L + ++   N+  L + +
Sbjct: 21  TFKAYLNGLLGQSSTANITE---AQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINN 75

Query: 302 NFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI 361
                + +    S L  L  L +     T      L+   SLT ++++ +  +  I   I
Sbjct: 76  IHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 362 VALKSLSFLSLS-NNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFK 420
             L  ++ + LS N ++T+I      L     LK L I            D +    G +
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMP----LKTLPELKSLNI----------QFDGVHDYRGIE 178

Query: 421 NLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG 458
           +                       KL  L      + G
Sbjct: 179 D---------------------FPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 39/218 (17%)

Query: 266 KLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLG 325
             +  ++ +      S +   +     +LT + L +     D++         ++ L + 
Sbjct: 18  PDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTIN 74

Query: 326 SNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIR 385
           +   T   P  ++   +L  + +    +     P +  L SL+ L +S+++  +    + 
Sbjct: 75  NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI--LT 130

Query: 386 ILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKK 445
            +     +  + +           N  +T     K                      L +
Sbjct: 131 KINTLPKVNSIDL---------SYNGAITDIMPLKT---------------------LPE 160

Query: 446 LQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGE 483
           L+ L++ F+ +       + +   L  +   +  I G+
Sbjct: 161 LKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 33/198 (16%)

Query: 85  GLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRL 144
           G + T +++   +  L+++ L++                 + DL+           I   
Sbjct: 31  GQSSTANITEAQMNSLTYITLANI---------------NVTDLTG----------IEYA 65

Query: 145 TQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAG 204
             N+    ++N   T        +    ++  L +     T      L   + L      
Sbjct: 66  H-NIKDLTINNIHATNYNP----ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 205 FNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDI 264
            +    S+   I T   +  + LS+N     I   +  L  L+ L +  + +       I
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG--I 177

Query: 265 GKLTNLESLVLHNNSLSG 282
                L  L   + ++ G
Sbjct: 178 EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 8e-10
 Identities = 34/225 (15%), Positives = 65/225 (28%), Gaps = 49/225 (21%)

Query: 363 ALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNL 422
             K+     L  +S  NIT A        +L  + +    + +       LT      N+
Sbjct: 21  TFKAYLNGLLGQSSTANITEA-----QMNSLTYITLANINVTD-------LTGIEYAHNI 68

Query: 423 QVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISG 482
           + L +          + I  L  L+ L +    +T      L  ++SL  +D S++    
Sbjct: 69  KDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 483 EFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAA 542
               +   LP +                S+    N  I +   + T  E           
Sbjct: 127 SILTKINTLPKVN---------------SIDLSYNGAITDIMPLKTLPE----------- 160

Query: 543 VSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGE 587
                  L  L++  +         I     L ++      + G+
Sbjct: 161 -------LKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 29/197 (14%), Positives = 65/197 (32%), Gaps = 41/197 (20%)

Query: 408 PDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNM 467
                +T A    +L  + LA   +       I     ++ L ++    T   P  +  +
Sbjct: 33  SSTANITEAQ-MNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGL 87

Query: 468 SSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKIL 527
           S+L  +      ++ +       L +LT            L+ S     ++         
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLT-----------LLDIS-----HSAH------- 124

Query: 528 TFHEQYTWKTTASAAVSLLRLL-LHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSG 586
                       S    +  L  ++ +DLS+N    +I   +  L  L+ +++  + +  
Sbjct: 125 ----------DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD 173

Query: 587 EIPVS-LKRLHFLSAFN 602
              +    +L+ L AF+
Sbjct: 174 YRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 78  HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGK 136
            L +  K +T     ++  LT L+ L++SH+       + +++   +  IDLS N     
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 137 IPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTG 186
           I   +  L   L + N+  +           ++ F  +  L   +    G
Sbjct: 152 I-MPLKTLP-ELKSLNIQFDGVHDYRG----IEDFPKLNQLYAFSQTIGG 195

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.1 bits (203), Expect = 2e-17
 Identities = 51/211 (24%), Positives = 77/211 (36%), Gaps = 35/211 (16%)

Query: 172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH 231
            S   ++      T                         +LP D+        L LS N 
Sbjct: 10  ASHLEVNCDKRNLT-------------------------ALPPDL--PKDTTILHLSENL 42

Query: 232 ISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNC 291
           +       ++  T L  L L    LT L       L  L +L L +N L  SLP   +  
Sbjct: 43  LYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQ-SLPLLGQTL 99

Query: 292 INLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPI-TLNSCKSLTAVNLAR 350
             LT+L++  N     + +     L +L+ L L  N    +LP   L     L  ++LA 
Sbjct: 100 PALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157

Query: 351 NQLEGQISPGIVA-LKSLSFLSLSNNSLTNI 380
           N L  ++  G++  L++L  L L  NSL  I
Sbjct: 158 NNLT-ELPAGLLNGLENLDTLLLQENSLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 81.3 bits (201), Expect = 4e-17
 Identities = 48/262 (18%), Positives = 75/262 (28%), Gaps = 69/262 (26%)

Query: 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNS 279
            S  +++    +++ ++   +       IL L  N L       +   T L  L L    
Sbjct: 10  ASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 280 LSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS 339
           L+  L                              TL  L  LDL  N    SLP+   +
Sbjct: 67  LT-KLQV--------------------------DGTLPVLGTLDLSHNQLQ-SLPLLGQT 98

Query: 340 CKSLTAVNLARNQLEGQISPGI-VALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLII 398
             +LT ++++ N+L   +  G    L  L  L L  N L  +                  
Sbjct: 99  LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL------------------ 139

Query: 399 PLNFMDETMPDN--DRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQL 456
                    P               L+ L LA   L       +  L+ L  L L  N L
Sbjct: 140 ---------PPGLLTPTP------KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 457 TGSVPRFLGNMSSLFHIDFSNN 478
             ++P+       L       N
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.2 bits (198), Expect = 9e-17
 Identities = 53/204 (25%), Positives = 68/204 (33%), Gaps = 31/204 (15%)

Query: 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHI 232
               L LS N         L   +RL         LT    D   T   L  L LS N +
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQL 89

Query: 233 SGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCI 292
             S+      L +L +L++  N LT L    +  L  L+ L L  N L  +LP  L    
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGL---- 143

Query: 293 NLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPI-TLNSCKSLTAVNLARN 351
                                +   KL  L L +N  T  LP   LN  ++L  + L  N
Sbjct: 144 --------------------LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182

Query: 352 QLEGQISPGIVALKSLSFLSLSNN 375
            L   I  G      L F  L  N
Sbjct: 183 SLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.7 bits (163), Expect = 3e-12
 Identities = 49/226 (21%), Positives = 74/226 (32%), Gaps = 58/226 (25%)

Query: 79  LWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIP 138
           L L    L      ++   T L+ LNL    L+ +     +   +  +DLS N  Q  +P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQLQ-SLP 93

Query: 139 STIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRL 198
                L                             +  LD+S NR T             
Sbjct: 94  LLGQTLPA---------------------------LTVLDVSFNRLT------------- 113

Query: 199 KTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYSNSL 256
                       SLP         L++L L  N +  ++  G+      L  L L +N+L
Sbjct: 114 ------------SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL 160

Query: 257 TGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN 302
           T L    +  L NL++L+L  NSL  ++P        L    L  N
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 49/210 (23%), Positives = 79/210 (37%), Gaps = 46/210 (21%)

Query: 412 RLTS--ANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSS 469
            LT+   +  K+  +L L+E  L     + +    +L  L+L   +LT  +    G +  
Sbjct: 21  NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPV 78

Query: 470 LFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTF 529
           L  +D S+N +    P     LPALT            L+ S      N +         
Sbjct: 79  LGTLDLSHNQLQ-SLPLLGQTLPALT-----------VLDVS-----FNRL--------- 112

Query: 530 HEQYTWKTTASAAV--SLLRLLLHMLDLSHNNFSGNIPDQI-SQLTNLERMDLSKNHLSG 586
                  T+        L  L    L L  N     +P  + +    LE++ L+ N+L+ 
Sbjct: 113 -------TSLPLGALRGLGEL--QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT- 161

Query: 587 EIPVSL-KRLHFLSAFNVAENNLRGSIPSG 615
           E+P  L   L  L    + EN+L  +IP G
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKG 190

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 47/287 (16%), Positives = 84/287 (29%), Gaps = 43/287 (14%)

Query: 172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH 231
           CS R      ++ T  +P  L         R     L             LE++ +S N 
Sbjct: 9   CSNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65

Query: 232 ISGSIKNGI-VNLTSLRILEL-YSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLK 289
           +   I+  +  NL  L  + +  +N+L  + P     L NL+ L++ N  +         
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 125

Query: 290 NCINLTLLNLQSNFFEGDISVFNFSTL-LKLRVLDLGSNLFTGSLPITLNSCKSLTAVNL 348
           + +   LL++Q N     I   +F  L  +  +L L  N          N  +       
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185

Query: 349 ARNQLEGQISPGI-VALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETM 407
             N LE ++   +         L +S   + ++      L   K L+             
Sbjct: 186 DNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRAR----------- 231

Query: 408 PDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFN 454
                L      + L                       L    L++ 
Sbjct: 232 -STYNLKKLPTLEKL---------------------VALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.7 bits (181), Expect = 3e-14
 Identities = 42/267 (15%), Positives = 87/267 (32%), Gaps = 35/267 (13%)

Query: 124 KIIDLSSNHFQGKIPSTIFR------LTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHL 177
           ++     +    +IPS + R           +   +   +F+G             +  +
Sbjct: 12  RVFLCQESKVT-EIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGD----------LEKI 59

Query: 178 DLSNNRFTGPVPLG----LGSCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNHI 232
           ++S N     +       L     ++  +A  N L   +  + +    +L+ L +S   I
Sbjct: 60  EISQNDVLEVIEADVFSNLPKLHEIRIEKA--NNLL-YINPEAFQNLPNLQYLLISNTGI 116

Query: 233 SGSIKNGI-VNLTSLRILELYSNSLTGLIPRDI--GKLTNLESLVLHNNSLSGSLPSSLK 289
              + +   ++     +L++  N     I R+   G       L L+ N +     S+  
Sbjct: 117 K-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175

Query: 290 NCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLA 349
                 L    +N  E ++    F       +LD+            L + K L A +  
Sbjct: 176 GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST- 233

Query: 350 RNQLEGQISPGIVALKSLSFLSLSNNS 376
              L  +  P +  L +L   SL+  S
Sbjct: 234 -YNL--KKLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.6 bits (173), Expect = 3e-13
 Identities = 41/250 (16%), Positives = 74/250 (29%), Gaps = 14/250 (5%)

Query: 103 LNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLI 162
                ++++ E PS L  N    +       +  I    F    +L    +S N    +I
Sbjct: 14  FLCQESKVT-EIPSDLPRN-AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 163 SWSAWVDSFCSIRHLDLSN-NRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTA-T 220
               +  +   +  + +   N      P    +   L+        +   LPD       
Sbjct: 71  EADVF-SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSL 128

Query: 221 SLEQLSLSFNHISGSIKNG-IVNLTS-LRILELYSNSLTGLIPRDIGKLTNLESLVLHNN 278
               L +  N    +I+    V L+    IL L  N +  +           E  +  NN
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188

Query: 279 SLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLN 338
           +L               +L++        +  +    L KLR     +      LP TL 
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL---KKLP-TLE 243

Query: 339 SCKSLTAVNL 348
              +L   +L
Sbjct: 244 KLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 40/244 (16%), Positives = 73/244 (29%), Gaps = 31/244 (12%)

Query: 98  THLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNN 156
            +   L     +L      + S    ++ I++S N     I + +F     L    +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 157 ---------SFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNY 207
                    +F  L           ++++L +SN        +      +        N 
Sbjct: 90  NNLLYINPEAFQNLP----------NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139

Query: 208 LTGSLPDDIYT--ATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS-NSLTGLIPRDI 264
              ++  + +   +     L L+ N I   I N   N T L  L L   N+L  L     
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198

Query: 265 GKLTNLESLVLHNNSLSGSLPS-SLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLD 323
              +    L +    +  SLPS  L+N   L   +  +        +     L+ L    
Sbjct: 199 HGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL-----KKLPTLEKLVALMEAS 252

Query: 324 LGSN 327
           L   
Sbjct: 253 LTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 37/218 (16%), Positives = 74/218 (33%), Gaps = 22/218 (10%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLS---SNHFQGKIPSTIFRLTQNLITFN 152
               L  + +S N +     + + SN  K+ ++    +N+    I    F+   NL    
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLL 110

Query: 153 VSNNSFTGLISWSAWVDSFC---SIRHLDLSNNRFTGPVPLGL--GSCSRLKTFRAGFNY 207
           +SN     L                  LD+ +N     +      G            N 
Sbjct: 111 ISNTGIKHL-----PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165

Query: 208 LTGSLPDDIYTATSLEQLSLSF-NHISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIG 265
           +   + +  +  T L++L+LS  N++   + N +    +   IL++    +  L    + 
Sbjct: 166 IQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223

Query: 266 KLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNF 303
            L  L +   +N      LP +L+  + L   +L    
Sbjct: 224 NLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 43/255 (16%), Positives = 75/255 (29%), Gaps = 39/255 (15%)

Query: 245 SLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFF 304
           S R+     + +T  IP D+    N   L      L      +     +L  + +  N  
Sbjct: 10  SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 305 EGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI-VA 363
              I    FS L KL  + +                          N L   I+P     
Sbjct: 67  LEVIEADVFSNLPKLHEIRI-----------------------EKANNLL-YINPEAFQN 102

Query: 364 LKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDN--DRLTSANGFKN 421
           L +L +L +SN  + ++    +I        +L I  N    T+  N    L+       
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKI--HSLQKVLLDIQDNINIHTIERNSFVGLSF-----E 155

Query: 422 LQVLGLAECKLKGQVPSWI-GKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLI 480
             +L L +  ++ ++ +      +  ++     N L           S    +D S   I
Sbjct: 156 SVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214

Query: 481 SGEFPKEFCRLPALT 495
                     L  L 
Sbjct: 215 HSLPSYGLENLKKLR 229

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 64/356 (17%), Positives = 107/356 (30%), Gaps = 91/356 (25%)

Query: 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHI 232
           SI    L  +  T                      +   L +D     S++++ LS N I
Sbjct: 5   SIEGKSLKLDAITT----------------EDEKSVFAVLLED----DSVKEIVLSGNTI 44

Query: 233 SG----SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL 288
                  +   I +   L I E              G++ +     L        L  +L
Sbjct: 45  GTEAARWLSENIASKKDLEIAEFSDIF--------TGRVKDEIPEAL------RLLLQAL 90

Query: 289 KNCINLTLLNLQSNFFEGDISVFNFSTLLK----LRVLDLGSN-------------LFTG 331
             C  L  + L  N F G  +       L     L  L L +N             L   
Sbjct: 91  LKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 332 SLPITLNSCKSLTAVNLARNQLEGQ----ISPGIVALKSLSFLSLSNNSLTN--ITGAI- 384
           ++     +   L ++   RN+LE       +    + + L  + +  N +    I   + 
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 385 RILMGCKNLKVLIIPLNFMD--------ETMPDNDRLTSANGFKNLQVLGLAECKLKGQV 436
             L  C+ LKVL +  N             +             NL+ LGL +C L  + 
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW---------PNLRELGLNDCLLSARG 260

Query: 437 PSWIGKL------KKLQVLDLSFNQLTGSVPRFLG-----NMSSLFHIDFSNNLIS 481
            + +           LQ L L +N++     R L       M  L  ++ + N  S
Sbjct: 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 68/408 (16%), Positives = 121/408 (29%), Gaps = 105/408 (25%)

Query: 221 SLEQLSLSFNHISG----SIKNGIVNLTSLRILELYSNSLTG----LIPRDIGKLTNLES 272
           S+E  SL  + I+     S+   ++   S++ + L  N++       +  +I    +LE 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 273 LVLHNNSLS----------GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLK---- 318
               +                L  +L  C  L  + L  N F G  +       L     
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTP 123

Query: 319 LRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT 378
           L  L L +N                    +AR   E  ++        L  +    N L 
Sbjct: 124 LEHLYLHNNGLG-----------PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172

Query: 379 NITGAIRI---LMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQ 435
           N              + L  + +  N +              G ++L + GLA C+    
Sbjct: 173 N-GSMKEWAKTFQSHRLLHTVKMVQNGI-----------RPEGIEHLLLEGLAYCQ---- 216

Query: 436 VPSWIGKLKKLQVLDLSFNQLTG----SVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRL 491
                    +L+VLDL  N  T     ++   L +  +L  +  ++ L+S          
Sbjct: 217 ---------ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD- 266

Query: 492 PALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLL-- 549
            A          N       L     N I                    A  +L  ++  
Sbjct: 267 -AF-----SKLENIGLQTLRL---QYNEIEL-----------------DAVRTLKTVIDE 300

Query: 550 ----LHMLDLSHNNFS--GNIPDQISQL----TNLERMDLSKNHLSGE 587
               L  L+L+ N FS   ++ D+I ++       E  +L       +
Sbjct: 301 KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTD 348

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 52/356 (14%), Positives = 98/356 (27%), Gaps = 83/356 (23%)

Query: 94  IGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNV 153
           +   + +   +L  + ++ E   S+ +       L  +               ++    +
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFA------VLLED--------------DSVKEIVL 39

Query: 154 SNNSFT--GLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGS 211
           S N+         S  + S   +   + S+            +                 
Sbjct: 40  SGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR--------------L 85

Query: 212 LPDDIYTATSLEQLSLSFNHISG----SIKNGIVNLTSLRILELYSNSLT---------- 257
           L   +     L  + LS N         + + +   T L  L L++N L           
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 258 ---GLIPRDIGKLTNLESLVLHNNSLSG----SLPSSLKNCINLTLLNLQSNFFEGDISV 310
                + +       L S++   N L          + ++   L  + +  N    +   
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 205

Query: 311 FNFSTLLK----LRVLDLGSNLFT--GSLPI--TLNSCKSLTAVNLARNQLEGQISPGIV 362
                 L     L+VLDL  N FT  GS  +   L S  +L  + L    L  +   G  
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR---GAA 262

Query: 363 AL---------KSLSFLSLSNNSLTNITGAIRILMG----CKNLKVLIIPLNFMDE 405
           A+           L  L L  N +        +         +L  L +  N   E
Sbjct: 263 AVVDAFSKLENIGLQTLRLQYNEIEL-DAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 34/185 (18%)

Query: 89  TISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-----NYIKIIDLSSNHFQ----GKIPS 139
            ++    N   L  +    NRL        +        +  + +  N  +      +  
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 140 TIFRLTQNLITFNVSNNSFT--GLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSR 197
                 Q L   ++ +N+FT  G  + +  + S+ ++R L L++   +            
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA----------- 258

Query: 198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISG----SIKNGI-VNLTSLRILELY 252
                 G   +  +          L+ L L +N I      ++K  I   +  L  LEL 
Sbjct: 259 -----RGAAAVVDAFSK--LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311

Query: 253 SNSLT 257
            N  +
Sbjct: 312 GNRFS 316

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 74.2 bits (183), Expect = 7e-15
 Identities = 58/240 (24%), Positives = 89/240 (37%), Gaps = 66/240 (27%)

Query: 244 TSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNF 303
              + L+L SN L+ L  +   +LT L  L L++N L  +LP+ +               
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGI--------------- 80

Query: 304 FEGDISVFNFSTLLKLRVLDLGSNLFTGSLPI-TLNSCKSLTAVNLARNQLEGQISPGIV 362
                    F  L  L  L +  N    +LPI   +   +L  + L RNQL+  + P + 
Sbjct: 81  ---------FKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVF 129

Query: 363 A-LKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDN--DRLTSANGF 419
             L  L++LSL  N L ++                           P    D+LT     
Sbjct: 130 DSLTKLTYLSLGYNELQSL---------------------------PKGVFDKLT----- 157

Query: 420 KNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPR-FLGNMSSLFHIDFSNN 478
            +L+ L L   +LK        KL +L+ L L  NQL   VP     ++  L  +    N
Sbjct: 158 -SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.9 bits (177), Expect = 5e-14
 Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 13/207 (6%)

Query: 100 LSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFT 159
            + ++ S  +L+   PS++ ++  K +DL SN     +PS  F     L    +++N   
Sbjct: 18  KNSVDCSSKKLT-AIPSNIPAD-TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ 74

Query: 160 GLISWSAWV-DSFCSIRHLDLSNNRFTGPVPLGLGSC-SRLKTFRAGFNYLTGSLPDDIY 217
            L    A +     ++  L +++N+    +P+G+      L   R   N L  SLP  ++
Sbjct: 75  TL---PAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVF 129

Query: 218 TA-TSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVL 275
            + T L  LSL +N +  S+  G+   LTSL+ L LY+N L  +      KLT L++L L
Sbjct: 130 DSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188

Query: 276 HNNSLSGSLPSSLKNCINLTLLNLQSN 302
            NN L      +  +   L +L LQ N
Sbjct: 189 DNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 76.5 bits (188), Expect = 9e-15
 Identities = 63/429 (14%), Positives = 132/429 (30%), Gaps = 50/429 (11%)

Query: 91  SLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-----NYIKIIDLSSNHFQGKIPSTIFRLT 145
           S+ +    H +  NL  +   G     + +      +++ I L            I +  
Sbjct: 70  SVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSF 129

Query: 146 QNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLG----SCSRLKTF 201
           +N     +S+         +A   +  +++ LDL  +         L     + + L + 
Sbjct: 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL 189

Query: 202 R----------AGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILEL 251
                      +    L    P       +L+ L L+       +   +     L  L  
Sbjct: 190 NISCLASEVSFSALERLVTRCP-------NLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242

Query: 252 YS------NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFE 305
                     +   +   +     L  L    +++   LP+    C  LT LNL     +
Sbjct: 243 GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302

Query: 306 GDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALK 365
               V       KL+ L +   +    L +  ++CK L  + +  ++         +  +
Sbjct: 303 SYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362

Query: 366 SLSFLSLSNNSL-------TNIT--GAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTS- 415
            L  +S+    L         +T    I I     N+    + +                
Sbjct: 363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422

Query: 416 -----ANGFKNLQVLGLAECKLKGQVPSWIGK-LKKLQVLDLSFNQLTG-SVPRFLGNMS 468
                    K+L+ L L+   L  +V  +IG   KK+++L ++F   +   +   L    
Sbjct: 423 GFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481

Query: 469 SLFHIDFSN 477
           SL  ++  +
Sbjct: 482 SLRKLEIRD 490

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.8 bits (142), Expect = 4e-09
 Identities = 42/330 (12%), Positives = 105/330 (31%), Gaps = 21/330 (6%)

Query: 94  IGNLTHLSHLNLSH--NRLSGEFPSSLSSNYIKIIDLSSNHFQGKIP----STIFRLTQN 147
           +     L  L        +  +  S LS       +L                ++ +   
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 148 LITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNY 207
           L T N+S  +          +     ++ L + +      + +   +C  L+  R   + 
Sbjct: 291 LTTLNLSYATVQS-YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSE 349

Query: 208 LTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKL 267
                P+   T   L  +S+    +  S+      +T+  ++ + + +   +    +  +
Sbjct: 350 PFVMEPNVALTEQGLVSVSMGCPKLE-SVLYFCRQMTNAALITI-ARNRPNMTRFRLCII 407

Query: 268 TNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLK-LRVLDLGS 326
                  L    L     + +++C +L  L+L       D       T  K + +L +  
Sbjct: 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLL--TDKVFEYIGTYAKKMEMLSVAF 465

Query: 327 NLFTG-SLPITLNSCKSLTAVNLARNQLEGQISPGIVAL----KSLSFLSLSNNSLTNIT 381
              +   +   L+ C SL  + +            ++A     +++  L +S+ S++   
Sbjct: 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPF---GDKALLANASKLETMRSLWMSSCSVSF-G 521

Query: 382 GAIRILMGCKNLKVLIIPLNFMDETMPDND 411
               +      L V +I      ++ P++ 
Sbjct: 522 ACKLLGQKMPKLNVEVIDERGAPDSRPESC 551

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 51/337 (15%), Positives = 108/337 (32%), Gaps = 48/337 (14%)

Query: 162 ISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSR-----LKTFRAGFNYLT------G 210
           +S +  +  F  +R ++L          L            ++   + + +L        
Sbjct: 56  VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM 115

Query: 211 SLPDDIYTA-----TSLEQLSLSF-NHIS-GSIKNGIVNLTSLRILELYSNSLTGLIPRD 263
            + DD          + + L LS     S   +        +L+ L+L  + +  +    
Sbjct: 116 VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175

Query: 264 IGKL----TNLESLVLHNNSLS---GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTL 316
           +       T+L SL +   +      +L   +  C NL  L L        ++       
Sbjct: 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRA 234

Query: 317 LKLRVLDLGS------NLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFL 370
            +L  L  G             L + L+ CK L  ++   + +   +         L+ L
Sbjct: 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294

Query: 371 SLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAEC 430
           +LS  ++ +    +++L  C  L+ L +     D  +        A+  K+L+ L +   
Sbjct: 295 NLSYATVQS-YDLVKLLCQCPKLQRLWVLDYIEDAGL-----EVLASTCKDLRELRVFPS 348

Query: 431 KLKGQVPSW----------IGKLKKLQVLDLSFNQLT 457
           +     P+                KL+ +     Q+T
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 46/216 (21%), Positives = 79/216 (36%), Gaps = 47/216 (21%)

Query: 242 NLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQS 301
            L +     L   S+T L+     +L+ +++    N+++  SL + ++   NL  L+L  
Sbjct: 17  GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSH 72

Query: 302 NFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI 361
           N    D+S      L KL  L +  N       +       L+ + L  N+L       +
Sbjct: 73  NQIS-DLS--PLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELR-DTDS-L 124

Query: 362 VALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKN 421
           + LK+L  LS+ NN L +I      L     L+VL +                  N   N
Sbjct: 125 IHLKNLEILSIRNNKLKSIVM----LGFLSKLEVLDL----------------HGNEITN 164

Query: 422 LQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLT 457
              L                +LKK+  +DL+  +  
Sbjct: 165 TGGL---------------TRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 45/235 (19%)

Query: 94  IGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNV 153
              L +    NL    ++             ++                     +  FN 
Sbjct: 15  DPGLANAVKQNLGKQSVT------------DLVSQKELS--------------GVQNFNG 48

Query: 154 SNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP 213
            N++   L      +  F +++ L LS+N+ +   P  L   ++L+      N L     
Sbjct: 49  DNSNIQSLAG----MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG 102

Query: 214 DDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESL 273
                +  L +L L  N +     + +++L +L IL + +N L  ++   +G L+ LE L
Sbjct: 103 IP---SACLSRLFLDNNELR-DTDS-LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVL 155

Query: 274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
            LH N ++      L     +  ++L                  +L + +   + 
Sbjct: 156 DLHGNEITN--TGGLTRLKKVNWIDLTGQ----KCVNEPVKYQPELYITNTVKDP 204

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 38/248 (15%), Positives = 74/248 (29%), Gaps = 56/248 (22%)

Query: 351 NQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDN 410
             +  Q+ P    L +    +L   S+T++            ++      + +       
Sbjct: 7   TPIN-QVFP-DPGLANAVKQNLGKQSVTDLVS----QKELSGVQNFNGDNSNIQS----- 55

Query: 411 DRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSL 470
             L     F NL+ L L+  ++     S +  L KL+ L ++ N+L           + L
Sbjct: 56  --LAGMQFFTNLKELHLSHNQIS--DLSPLKDLTKLEELSVNRNRLKNLNG---IPSACL 108

Query: 471 FHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFH 530
             +   NN +          L  L                S+    NN +     +    
Sbjct: 109 SRLFLDNNELRD--TDSLIHLKNLE-------------ILSI---RNNKLKSIVMLGFLS 150

Query: 531 EQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPV 590
           +                  L +LDL  N  + N    +++L  +  +DL+      E   
Sbjct: 151 K------------------LEVLDLHGNEIT-NTGG-LTRLKKVNWIDLTGQKCVNEPVK 190

Query: 591 SLKRLHFL 598
               L+  
Sbjct: 191 YQPELYIT 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 10/182 (5%)

Query: 172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTA--TSLEQLSLSF 229
           C+   L  S  +    VP  L S           N L+  L  +      T+L  L LS 
Sbjct: 18  CASNILSCSKQQLPN-VPQSLPS--YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSH 73

Query: 230 NHISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL 288
           NH++  I +   V + +LR L+L SN L  L       L  LE L+L+NN +     ++ 
Sbjct: 74  NHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 132

Query: 289 KNCINLTLLNLQSNFFEG-DISVF-NFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAV 346
           ++   L  L L  N      + +  + + L KL +LDL SN         L    +    
Sbjct: 133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 347 NL 348
            L
Sbjct: 193 GL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 13/173 (7%)

Query: 137 IPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCS 196
           +P ++   T  L   ++S+N+ + L +         ++  L LS+N              
Sbjct: 33  VPQSLPSYTALL---DLSHNNLSRLRAEWTP-TRLTNLHSLLLSHNHLNFISSEAFVPVP 88

Query: 197 RLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYSN 254
            L+      N+L  +L + +++   +LE L L  NHI   +      ++  L+ L L  N
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146

Query: 255 SLTGLIP---RDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTL--LNLQSN 302
            ++       +D  KL  L  L L +N L     + L+         L L +N
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 13/185 (7%)

Query: 103 LNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLI 162
           L+ S  +L    P SL S    ++DLS N+              NL +  +S+N     I
Sbjct: 23  LSCSKQQLP-NVPQSLPSY-TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FI 79

Query: 163 SWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYT-ATS 221
           S  A+     ++R+LDLS+N               L+      N++   +  + +     
Sbjct: 80  SSEAF-VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQ 137

Query: 222 LEQLSLSFNHISGSIKNGI----VNLTSLRILELYSNSLTGLIPRDIGKLTNL--ESLVL 275
           L++L LS N IS      +      L  L +L+L SN L  L   D+ KL       L L
Sbjct: 138 LQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

Query: 276 HNNSL 280
           HNN L
Sbjct: 197 HNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 32/177 (18%)

Query: 341 KSLTAV-----------NLARNQLEGQISPGIV--ALKSLSFLSLSNNSLTNI-TGAIRI 386
           + L  V           +L+ N L  ++        L +L  L LS+N L  I + A   
Sbjct: 28  QQLPNVPQSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--- 83

Query: 387 LMGCKNLKVLIIPLNFMDETMPDN--DRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLK 444
            +   NL+ L +  N +  T+ +     L        L+VL L    +     +    + 
Sbjct: 84  FVPVPNLRYLDLSSNHL-HTLDEFLFSDLQ------ALEVLLLYNNHIVVVDRNAFEDMA 136

Query: 445 KLQVLDLSFNQLTGSVP----RFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPE 497
           +LQ L LS NQ++   P    +    +  L  +D S+N +      +  +LPA    
Sbjct: 137 QLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 33/164 (20%), Positives = 49/164 (29%), Gaps = 31/164 (18%)

Query: 418 GFKNLQVLGLAECKLKGQVPSWI-GKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFS 476
              NL  L L+   L   + S     +  L+ LDLS N L         ++ +L  +   
Sbjct: 62  RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120

Query: 477 NNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWK 536
           NN I       F  +  L             L       S N      +I  F  +    
Sbjct: 121 NNHIVVVDRNAFEDMAQLQ-----------KLYL-----SQN------QISRFPVE---- 154

Query: 537 TTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLS 580
                  + L   L +LDLS N         + +L    +  L 
Sbjct: 155 --LIKDGNKLP-KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 48/240 (20%)

Query: 244 TSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNF 303
                  L   S+T  + ++  +L +++ ++ +N+ +  S+   ++   N+  L L  N 
Sbjct: 19  AETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNK 74

Query: 304 FEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITL-NSCKSLTAVNLARNQLEGQISPGIV 362
              DIS      L  L  L L  N    SLP  + +   +L  + L  NQL+  +  G+ 
Sbjct: 75  LH-DISALK--ELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVF 129

Query: 363 -ALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKN 421
             L +L++L+L++N L ++   +                 F        D+LT      N
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGV-----------------F--------DKLT------N 158

Query: 422 LQVLGLAECKLKGQVPSWI-GKLKKLQVLDLSFNQLTGSVPR--FLGNMSSLFHIDFSNN 478
           L  L L+  +L+  +P  +  KL +L+ L L  NQL  SVP   F   ++SL +I   +N
Sbjct: 159 LTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVF-DRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 21/185 (11%)

Query: 124 KIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNR 183
              +L          +       ++     +N+    +      +    ++R+L L  N+
Sbjct: 22  IKANLKKKSVT-DAVT--QNELNSIDQIIANNSDIKSVQG----IQYLPNVRYLALGGNK 74

Query: 184 FTGPVPLGLG---SCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNHISGSIKNG 239
                   +      + L       N L  SLP+ ++   T+L++L L  N +  S+ +G
Sbjct: 75  LHD-----ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDG 127

Query: 240 IVN-LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL-KNCINLTLL 297
           + + LT+L  L L  N L  L      KLTNL  L L  N L  SLP  +      L  L
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDL 186

Query: 298 NLQSN 302
            L  N
Sbjct: 187 RLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 22/207 (10%)

Query: 103 LNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLI 162
            NL    ++ +  +    N I  I  +++  +  +     +   N+    +  N    + 
Sbjct: 24  ANLKKKSVT-DAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS 79

Query: 163 SWSAWVDSFCSIRHLDLSNNRFTGPVPLGL-GSCSRLKTFRAGFNYLTGSLPDDIYTA-T 220
           +         ++ +L L+ N+    +P G+    + LK      N L  SLPD ++   T
Sbjct: 80  AL----KELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLT 133

Query: 221 SLEQLSLSFNHISGSIKNGIV-NLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNS 279
           +L  L+L+ N +  S+  G+   LT+L  L+L  N L  L      KLT L+ L L+ N 
Sbjct: 134 NLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192

Query: 280 LSGSLPS----SLKNCINLTLLNLQSN 302
           L  S+P      L    +L  + L  N
Sbjct: 193 LK-SVPDGVFDRLT---SLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 40/192 (20%)

Query: 93  SIGNLTHLSHLNLSHNRLS--GEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLIT 150
            I  L ++ +L L  N+L         L++  +  + L+ N  Q  +P+ +F    NL  
Sbjct: 58  GIQYLPNVRYLALGGNKLHDISAL-KELTN--LTYLILTGNQLQ-SLPNGVFDKLTNLKE 113

Query: 151 FNVSNNSFTGLISWSAWV-DSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLT 209
             +  N    L      V D   ++ +L+L++N+                          
Sbjct: 114 LVLVENQLQSL---PDGVFDKLTNLTYLNLAHNQLQ------------------------ 146

Query: 210 GSLPDDIY-TATSLEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIPRDI-GK 266
            SLP  ++   T+L +L LS+N +  S+  G+ + LT L+ L LY N L   +P  +  +
Sbjct: 147 -SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDR 203

Query: 267 LTNLESLVLHNN 278
           LT+L+ + LH+N
Sbjct: 204 LTSLQYIWLHDN 215

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 68.8 bits (168), Expect = 3e-12
 Identities = 64/428 (14%), Positives = 123/428 (28%), Gaps = 40/428 (9%)

Query: 91  SLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-----NYIKIIDLSSNHFQGKIPSTIFRLT 145
           SL +      +  NL      G     ++        +K +              + +  
Sbjct: 77  SLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKAR 136

Query: 146 -QNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLG----SCSRLKT 200
             +L T  +   S        + V     I+ L +  + F+      L       + L+ 
Sbjct: 137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEV 196

Query: 201 FRAGFNYLTGSLPDDIYTA----TSLEQLSLSFNHIS--GSIKNGIVNLTSLRILELYSN 254
                       P D+ T      SL  + +    I           NL       L  +
Sbjct: 197 LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNED 256

Query: 255 SLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFS 314
                   ++     L  L L     +  +P        +  L+L     E +       
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315

Query: 315 TLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISP--------GIVAL-- 364
               L VL+  + +    L +    CK L  + + R   E  +          G++AL  
Sbjct: 316 KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375

Query: 365 --KSLSFLSLSNNSLTNITGAIRILMGCKNLKVLII-----PLNFMDETMPDNDRLTSAN 417
             + L ++++  + +TN      I    KNL    +          D  + DN   +   
Sbjct: 376 GCQELEYMAVYVSDITN-ESLESIGTYLKNLCDFRLVLLDREERITDLPL-DNGVRSLLI 433

Query: 418 GFKNLQVLGLAEC--KLKGQVPSWIGKL-KKLQVLDLSFNQLT-GSVPRFLGNMSSLFHI 473
           G K L+          L     S+IG+    ++ + L +   +   +  F     +L  +
Sbjct: 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493

Query: 474 DFSNNLIS 481
           +      S
Sbjct: 494 EMRGCCFS 501

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 64.2 bits (156), Expect = 6e-11
 Identities = 69/405 (17%), Positives = 134/405 (33%), Gaps = 41/405 (10%)

Query: 88  GTISLSIGNLTHLSHLNLSH-NRLSGEFPSSLSSN--YIKIIDLSSNHFQGKIPSTIFRL 144
               L+      L  L L   +  + +   S+ ++   IK + +  + F  K    +  L
Sbjct: 128 DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187

Query: 145 TQNLITFNVSNNSFTGLI-----SWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLK 199
            Q+  +  V N   T               +  S+  + + +      V     + + L+
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLE 246

Query: 200 TFRAGFNYLTGSLPDDIYTATSLEQLS-LSFNHIS-GSIKNGIVNLTSLRILEL-YSNSL 256
            F  G       +P+         +L  L  +++    +         +R L+L Y+   
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306

Query: 257 TGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFE----------G 306
           T      I K  NLE L   N      L    + C  L  L ++    E           
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

Query: 307 DISVFNFSTLL-KLRVLDLGSNLFT-GSLPITLNSCKSLTAVNLARNQLEGQIS-----P 359
              +   +    +L  + +  +  T  SL       K+L    L     E +I+      
Sbjct: 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426

Query: 360 GIVAL----KSLSFLSLSNNSLTNIT--GAIRILMGCKNLKVLIIPLNFMDETMPDNDRL 413
           G+ +L    K L   +        +T  G   I     N++ ++  L ++ E+  D   +
Sbjct: 427 GVRSLLIGCKKLRRFAFYLRQ-GGLTDLGLSYIGQYSPNVRWML--LGYVGES--DEGLM 481

Query: 414 TSANGFKNLQVLGLAECKLKGQ-VPSWIGKLKKLQVLDLSFNQLT 457
             + G  NLQ L +  C    + + + + KL  L+ L +   + +
Sbjct: 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 40/277 (14%), Positives = 81/277 (29%), Gaps = 33/277 (11%)

Query: 244 TSLRILELYSNSLTGLIPRDIGKLTNLESLVLHN---------------NSLSGSLPSSL 288
             + +   Y+ +   L  R      NL SL L                   ++  +    
Sbjct: 53  EHVTMALCYTATPDRLSRR----FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEIS 108

Query: 289 KNCINLTLLNLQSNFF-EGDISVFNFSTLLKLRVLDLG--SNLFTGSLPITLNSCKSLTA 345
            N   L  ++ +     + D+     +    L  L L   S   T  L   +  C+ +  
Sbjct: 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKT 168

Query: 346 VNLARNQLEGQISPGIVAL----KSLSFLSLSNNSLTNIT--GAIRILMGCKNLKVLIIP 399
           + +  +    +    +  L     SL  L+        I+      I   C++L  + + 
Sbjct: 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228

Query: 400 LNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGS 459
              + E         +A   +      L E     +    +   +KL  L LS+      
Sbjct: 229 DFEILE---LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE- 284

Query: 460 VPRFLGNMSSLFHIDFSN-NLISGEFPKEFCRLPALT 495
           +P      + +  +D     L + +      + P L 
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 48/167 (28%), Positives = 69/167 (41%), Gaps = 7/167 (4%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
           S+P  I   T  E+L L    ++         LT L  L L  N L  L       LT L
Sbjct: 28  SVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85

Query: 271 ESLVLHNNSLSGSLPSSL-KNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF 329
            +L L NN L+ SLP  +  +   L  L L  N  +  +    F  L KL+ L L +N  
Sbjct: 86  GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQL 143

Query: 330 TGSLPI-TLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNN 375
             S+P    +   +L  ++L+ NQL+         L  L  ++L  N
Sbjct: 144 Q-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 41/178 (23%), Positives = 63/178 (35%), Gaps = 29/178 (16%)

Query: 177 LDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNHISGS 235
           LDL +              ++L      +N L  +L   ++   T L  L L+ N ++ S
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-S 97

Query: 236 IKNGIV-NLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINL 294
           +  G+  +LT L  L L  N L  L      +LT L+ L L+ N L  S+P+        
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGA------ 150

Query: 295 TLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQ 352
                             F  L  L+ L L +N          +    L  + L  NQ
Sbjct: 151 ------------------FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 50/180 (27%), Positives = 70/180 (38%), Gaps = 39/180 (21%)

Query: 320 RVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIV-ALKSLSFLSLSNNSLT 378
             LDL S         T      LT +NL  NQL+  +S G+   L  L  L L+NN L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 379 NITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPS 438
           ++   +                 F        D LT       L  L L   +LK  +PS
Sbjct: 97  SLPLGV-----------------F--------DHLT------QLDKLYLGGNQLKS-LPS 124

Query: 439 WI-GKLKKLQVLDLSFNQLTGSVPR--FLGNMSSLFHIDFSNNLISGEFPKEFCRLPALT 495
            +  +L KL+ L L+ NQL  S+P   F   +++L  +  S N +       F RL  L 
Sbjct: 125 GVFDRLTKLKELRLNTNQLQ-SIPAGAF-DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 54/208 (25%), Positives = 80/208 (38%), Gaps = 43/208 (20%)

Query: 252 YSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVF 311
              SL   +P  I    + E L L +  L+    ++ +    LT LNL  N  +  +S  
Sbjct: 22  QGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAG 77

Query: 312 NFSTLLKLRVLDLGSNLFTGSLPITL-NSCKSLTAVNLARNQLEGQISPGIV-ALKSLSF 369
            F  L +L  L L +N    SLP+ + +    L  + L  NQL+  +  G+   L  L  
Sbjct: 78  VFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKE 135

Query: 370 LSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDN--DRLTSANGFKNLQVLGL 427
           L L+ N L +I                           P    D+LT      NLQ L L
Sbjct: 136 LRLNTNQLQSI---------------------------PAGAFDKLT------NLQTLSL 162

Query: 428 AECKLKGQVPSWIGKLKKLQVLDLSFNQ 455
           +  +L+        +L KLQ + L  NQ
Sbjct: 163 STNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 46/204 (22%), Positives = 72/204 (35%), Gaps = 58/204 (28%)

Query: 79  LWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIP 138
           L L   GL      +   LT L+ LNL +N+L                          + 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------------------------TLS 75

Query: 139 STIFRLTQNLITFNVSNNSFTGLISWSAWV-DSFCSIRHLDLSNNRFTGPVPLGLGSCSR 197
           + +F     L T  ++NN    L      V D    +  L L  N+              
Sbjct: 76  AGVFDDLTELGTLGLANNQLASL---PLGVFDHLTQLDKLYLGGNQLK------------ 120

Query: 198 LKTFRAGFNYLTGSLPDDIYT-ATSLEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNS 255
                        SLP  ++   T L++L L+ N +  SI  G  + LT+L+ L L +N 
Sbjct: 121 -------------SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ 166

Query: 256 LTGLIPRDI-GKLTNLESLVLHNN 278
           L   +P     +L  L+++ L  N
Sbjct: 167 LQS-VPHGAFDRLGKLQTITLFGN 189

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.6 bits (167), Expect = 3e-12
 Identities = 46/257 (17%), Positives = 84/257 (32%), Gaps = 48/257 (18%)

Query: 205 FNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDI 264
                     D  T   L +  LS    +  +++ + +   L+ LE  +          I
Sbjct: 334 LKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCL---LTII 389

Query: 265 GKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLL----KLR 320
             +  L+ L+    +L             +  +            +   S L      +R
Sbjct: 390 LLMRALDPLLYEKETLQ-----YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR 444

Query: 321 VLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNI 380
           VL L     T  L   L     +T ++L+ N+L   + P + AL+ L  L  S+N+L N+
Sbjct: 445 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV 501

Query: 381 TGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWI 440
            G    +     L+ L++           N+RL  +   + L                  
Sbjct: 502 DG----VANLPRLQELLL----------CNNRLQQSAAIQPL------------------ 529

Query: 441 GKLKKLQVLDLSFNQLT 457
               +L +L+L  N L 
Sbjct: 530 VSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.7 bits (162), Expect = 1e-11
 Identities = 38/318 (11%), Positives = 87/318 (27%), Gaps = 42/318 (13%)

Query: 17  LHIIIIILSCFSSFCQACNQIDQDSLLSLGFNISSPGLNW-------SSSTDCCLWEGIK 69
               + + S   +     ++             + P   W       S +          
Sbjct: 261 FSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRV 320

Query: 70  CDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLS 129
                      +  K               L    LS  + +       S   ++ ++  
Sbjct: 321 IWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPE 380

Query: 130 SNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP 189
           +                 L+T  +   +   L+     +  F +++ +D           
Sbjct: 381 NKWC--------------LLTIILLMRALDPLLYEKETLQYFSTLKAVD----------- 415

Query: 190 LGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL 249
                  R        +               +  L L+   ++  + + +  L  +  L
Sbjct: 416 -----PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHL 468

Query: 250 ELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDIS 309
           +L  N L   +P  +  L  LE L   +N+L  ++   + N   L  L L +N  +   +
Sbjct: 469 DLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAA 525

Query: 310 VFNFSTLLKLRVLDLGSN 327
           +    +  +L +L+L  N
Sbjct: 526 IQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 1e-11
 Identities = 50/318 (15%), Positives = 95/318 (29%), Gaps = 37/318 (11%)

Query: 81  LPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPST 140
           + W+   G    S   L  L   +L+       F    + +  +   +            
Sbjct: 285 VEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD 344

Query: 141 IFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKT 200
                + L    +S           + ++S   ++ L+  N      + L + +   L  
Sbjct: 345 SATD-EQLFRCELSVEK---STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 201 FRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLI 260
            +    Y +     D         L    +          +    +R+L L    LT L 
Sbjct: 401 EKETLQYFSTLKAVDP---MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC 457

Query: 261 PRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLR 320
              + +L  +  L L +N L  +LP +L     L +L    N  E   +V   + L +L+
Sbjct: 458 H--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQ 511

Query: 321 VLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNI 380
            L L +N           + + L +                     L  L+L  NSL   
Sbjct: 512 ELLLCNNRLQ-----QSAAIQPLVS------------------CPRLVLLNLQGNSLCQE 548

Query: 381 TGAIRILMG-CKNLKVLI 397
            G    L     ++  ++
Sbjct: 549 EGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 7e-09
 Identities = 50/312 (16%), Positives = 95/312 (30%), Gaps = 25/312 (8%)

Query: 205 FNYLTGSL-PDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRD 263
           + Y    L   + +       +S     +S      +   + +  L L  +     +   
Sbjct: 229 WFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWR 288

Query: 264 IGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVF-------NFSTL 316
                N  S V   +  + SL   L       +     +  E  +          + +T 
Sbjct: 289 TPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATD 348

Query: 317 LKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNS 376
            +L   +L     T  L   L SCK L  +          I   + AL  L +   +   
Sbjct: 349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 407

Query: 377 LTNITGA----IRILMGCKNLKVLIIPLNFMDETMP-----DNDRLTSANG---FKNLQV 424
            + +          L   ++  +L   +  M+          +  LT          +  
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTH 467

Query: 425 LGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISG-E 483
           L L+  +L+  +P  +  L+ L+VL  S N L  +V   + N+  L  +   NN +    
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSA 524

Query: 484 FPKEFCRLPALT 495
             +     P L 
Sbjct: 525 AIQPLVSCPRLV 536

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 36/206 (17%), Positives = 64/206 (31%), Gaps = 21/206 (10%)

Query: 440 IGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQD 499
               ++L   +LS  + T  +   L +   L  ++  N             L  L  E++
Sbjct: 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE 403

Query: 500 KNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLH-------- 551
             +   S L+      +        K L  +     +      + L    L         
Sbjct: 404 TLQ-YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQL 462

Query: 552 ----MLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENN 607
                LDLSHN     +P  ++ L  LE +  S N L   +   +  L  L    +  N 
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR 519

Query: 608 LRGSIPSGGQFDTFPS---SSFRGNP 630
           L+    +     + P     + +GN 
Sbjct: 520 LQ-QSAAIQPLVSCPRLVLLNLQGNS 544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 55/366 (15%), Positives = 103/366 (28%), Gaps = 81/366 (22%)

Query: 90  ISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSN------YIKIIDLSSNHFQGK----IPS 139
           +         ++ L+LS N L       L          +  ++LS N    K    +  
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 140 TIFRLTQNLITFNVSNNSFTG----LISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSC 195
            +  +  N+ + N+S N  +      +          +I  LDL  N F+          
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELV-KTLAAIPFTITVLDLGWNDFSS--------- 123

Query: 196 SRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNL--------TSLR 247
                     +    +  +      S+  L+L  N +          L         ++ 
Sbjct: 124 -------KSSSEFKQAFSN---LPASITSLNLRGNDLGIK---SSDELIQILAAIPANVN 170

Query: 248 ILELYSNSLTGLIPRDIGKL-----TNLESLVLHNNSLSGS----LPSSLKNC-INLTLL 297
            L L  N+L      ++ K       ++ SL L  N L       L     +   ++  L
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230

Query: 298 NLQSNFFEGDISVFNFSTLLK----LRVLDLGSNLFTG-------SLPITLNSCKSLTAV 346
           NL  N      S+ N   L      L+ + L  ++          +L     + + +  V
Sbjct: 231 NLCLNCL-HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289

Query: 347 NLARNQLEGQISPGIVAL--------KSLSFLSLSNNSLTNITG---AIRILMGCKNLKV 395
           +    ++        + +              SL N  L         I  L     L+ 
Sbjct: 290 DKNGKEIHPS---HSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRE 346

Query: 396 LIIPLN 401
            I    
Sbjct: 347 SIQTCK 352

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 59/391 (15%), Positives = 106/391 (27%), Gaps = 94/391 (24%)

Query: 236 IKNGIVNLTSLRILELYSNSLTGLIPRDIGKL-----TNLESLVLHNNSLS----GSLPS 286
           ++        +  L+L  N+L  +   ++ +       ++ SL L  NSL       L  
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 287 SLK-NCINLTLLNLQSNFFEGDISVFNFSTLLK-----LRVLDLGSNLFTGSLPITLNSC 340
            L     N+T LNL  NF     S       L      + VLDLG N        +  S 
Sbjct: 74  ILAAIPANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLDLGWN------DFSSKSS 126

Query: 341 KSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPL 400
                                    S++ L+L  N L     +  ++     +   +  L
Sbjct: 127 SEFKQAFSNLP-------------ASITSLNLRGNDLGI-KSSDELIQILAAIPANVNSL 172

Query: 401 NFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSV 460
           N               N   +     LA+  L             +  LDLS N L    
Sbjct: 173 NL------------RGNNLASKNCAELAKF-LAS-------IPASVTSLDLSANLLGLKS 212

Query: 461 PRFLG-----NMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANES-YLEFSLFK 514
              L        + +  ++   N + G   +    L      +D  K  ++ YL      
Sbjct: 213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL------KDSLKHLQTVYL------ 260

Query: 515 GSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLL-----LHMLDLSHNNFSGNIPDQIS 569
              + +                 +     +L         + ++D +      +    IS
Sbjct: 261 -DYDIVKN--------------MSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305

Query: 570 QLTNLERMDLSKNHLSGEIPVSLKRLHFLSA 600
            L            L  +  +  ++      
Sbjct: 306 NLIRELSGKADVPSLLNQCLIFAQKHQTNIE 336

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 7/143 (4%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTN 269
            +P ++       ++ L  N I   I  G       LR ++L +N ++ L P     L +
Sbjct: 25  EIPTNLPETI--TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81

Query: 270 LESLVLHNNSLSGSLPSSL-KNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
           L SLVL+ N ++  LP SL +   +L LL L +N     + V  F  L  L +L L  N 
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNK 139

Query: 329 FTGSLPITLNSCKSLTAVNLARN 351
                  T +  +++  ++LA+N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 205 FNYLTGSLPDDIYTA-TSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYSNSLTGLIPR 262
            N +   +P   ++    L ++ LS N IS  +       L SL  L LY N +T L   
Sbjct: 41  QNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKS 98

Query: 263 DIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVL 322
               L +L+ L+L+ N ++     + ++  NL LL+L  N  +  I+   FS L  ++ +
Sbjct: 99  LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTM 157

Query: 323 DLGSNLF 329
            L  N F
Sbjct: 158 HLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 35/176 (19%)

Query: 106 SHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWS 165
               L+ E P++L    I  I L  N  +  IP   F   + L   ++SNN  + L   +
Sbjct: 19  RGKGLT-EIPTNLPET-ITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISEL---A 72

Query: 166 AWV-DSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDI-YTATSLE 223
                   S+  L L  N+ T                          LP  +     SL+
Sbjct: 73  PDAFQGLRSLNSLVLYGNKIT-------------------------ELPKSLFEGLFSLQ 107

Query: 224 QLSLSFNHISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNN 278
            L L+ N I+  ++     +L +L +L LY N L  +       L  ++++ L  N
Sbjct: 108 LLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 26/155 (16%)

Query: 339 SCKSLTAV-----------NLARNQLEGQISPGI-VALKSLSFLSLSNNSLTNITGAIRI 386
             K LT +            L +N ++  I PG     K L  + LSNN ++ +  A   
Sbjct: 19  RGKGLTEIPTNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISEL--APDA 75

Query: 387 LMGCKNLKVLIIPLNFMDETMPDN--DRLTSANGFKNLQVLGLAECKLKGQVPSWI-GKL 443
             G ++L  L++  N +   +P +  + L       +LQ+L L   K+   +       L
Sbjct: 76  FQGLRSLNSLVLYGNKI-TELPKSLFEGLF------SLQLLLLNANKIN-CLRVDAFQDL 127

Query: 444 KKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478
             L +L L  N+L          + ++  +  + N
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 64.3 bits (157), Expect = 8e-12
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 6/145 (4%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTN 269
            +P+ I   T   +L L+ N  +     GI   L  LR +   +N +T +        + 
Sbjct: 25  KIPEHIPQYT--AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 270 LESLVLHNNSLSGSLPSSL-KNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
           +  ++L +N L  ++   + K   +L  L L+SN     +   +F  L  +R+L L  N 
Sbjct: 83  VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQ 140

Query: 329 FTGSLPITLNSCKSLTAVNLARNQL 353
            T   P   ++  SL+ +NL  N  
Sbjct: 141 ITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 61.2 bits (149), Expect = 9e-11
 Identities = 31/129 (24%), Positives = 64/129 (49%), Gaps = 5/129 (3%)

Query: 177 LDLSNNRFTGPVPLGL-GSCSRLKTFRAGFNYLTGSLPDDIYT-ATSLEQLSLSFNHISG 234
           L L+NN FT     G+     +L+      N +T  + +  +  A+ + ++ L+ N +  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE- 94

Query: 235 SIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCIN 293
           ++++ +   L SL+ L L SN +T +       L+++  L L++N ++   P +     +
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 294 LTLLNLQSN 302
           L+ LNL +N
Sbjct: 155 LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 38/163 (23%)

Query: 320 RVLDLGSNLFTGSLPIT--LNSCKSLTAVNLARNQLEGQISPGIVA-LKSLSFLSLSNNS 376
             L L +N FT  L  T        L  +N + N++   I  G       ++ + L++N 
Sbjct: 35  AELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR 92

Query: 377 LTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQV 436
           L N+   +                 F          L       +L+ L L   ++    
Sbjct: 93  LENVQHKM-----------------F--------KGLE------SLKTLMLRSNRITCVG 121

Query: 437 PSWIGKLKKLQVLDLSFNQLTGSVPR-FLGNMSSLFHIDFSNN 478
                 L  +++L L  NQ+T +V       + SL  ++   N
Sbjct: 122 NDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 78/185 (42%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN 155
            L  L  +N S+N+++                         I    F     +       
Sbjct: 55  KLPQLRKINFSNNKIT------------------------DIEEGAFEGASGV------- 83

Query: 156 NSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAG-FNYLTGSLPD 214
                                + L++N              RL+  +   F  L      
Sbjct: 84  -------------------NEILLTSN--------------RLENVQHKMFKGL------ 104

Query: 215 DIYTATSLEQLSLSFNHISGSIKNGI-VNLTSLRILELYSNSLTGLIPRDIGKLTNLESL 273
                 SL+ L L  N I+  + N   + L+S+R+L LY N +T + P     L +L +L
Sbjct: 105 -----ESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158

Query: 274 VLHNN 278
            L  N
Sbjct: 159 NLLAN 163

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 3/111 (2%)

Query: 218 TATSLEQLSLSFNHIS-GSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLH 276
           T + +++L L  +  + G ++        L  L   +  LT +   ++ KL  L+ L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 277 NNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSN 327
           +N +SG L    + C NLT LNL  N  +   ++     L  L+ LDL + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 8/135 (5%)

Query: 266 KLTNLESLVLHNNSLS-GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDL 324
             ++++ LVL N+  + G L         L  L+  +       S+ N   L KL+ L+L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---SIANLPKLNKLKKLEL 71

Query: 325 GSNLFTGSLPITLNSCKSLTAVNLARNQLE--GQISPGIVALKSLSFLSLSNNSLTNITG 382
             N  +G L +    C +LT +NL+ N+++    I P +  L++L  L L N  +TN+  
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNCEVTNLND 130

Query: 383 -AIRILMGCKNLKVL 396
               +      L  L
Sbjct: 131 YRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 419 FKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478
           F+ L+ L      L   + + + KL KL+ L+LS N+++G +        +L H++ S N
Sbjct: 41  FEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98

Query: 479 LIS 481
            I 
Sbjct: 99  KIK 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 3/108 (2%)

Query: 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNS 279
               +L L    I   I+N    L     ++   N +  L       L  L++L+++NN 
Sbjct: 19  VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNR 75

Query: 280 LSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSN 327
           +        +   +LT L L +N       +   ++L  L  L +  N
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 60.1 bits (146), Expect = 9e-11
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 8/134 (5%)

Query: 266 KLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLG 325
                  L L    +   + +          ++   N       +  F  L +L+ L + 
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLLVN 72

Query: 326 SNLFTGSLPITLNSCKSLTAVNLARNQLE--GQISPGIVALKSLSFLSLSNNSLTNITG- 382
           +N           +   LT + L  N L   G + P + +LKSL++L +  N +TN    
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRNPVTNKKHY 131

Query: 383 AIRILMGCKNLKVL 396
            + ++     ++VL
Sbjct: 132 RLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 286 SSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTA 345
           +   N +    L+L+       I     +TL +   +D   N     L       + L  
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLG-ATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKT 68

Query: 346 VNLARNQLEGQISPGIV-ALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVL 396
           + +  N++  +I  G+  AL  L+ L L+NNSL  + G +  L   K+L  L
Sbjct: 69  LLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVEL-GDLDPLASLKSLTYL 118

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 3/108 (2%)

Query: 221 SLEQLSLSFNHIS-GSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNS 279
           ++ +L L     + G I+       +L  L L +  L  +   ++ KL  L+ L L  N 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENR 82

Query: 280 LSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSN 327
           + G L    +   NLT LNL  N  +   ++     L  L+ LDL + 
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 8/134 (5%)

Query: 267 LTNLESLVLHNNSLS-GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLG 325
              +  LVL N   + G +       +NL  L+L +       SV N   L KL+ L+L 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLELS 79

Query: 326 SNLFTGSLPITLNSCKSLTAVNLARNQLE--GQISPGIVALKSLSFLSLSNNSLTNITG- 382
            N   G L +      +LT +NL+ N+L+    + P +  L+ L  L L N  +TN+   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCEVTNLNDY 138

Query: 383 AIRILMGCKNLKVL 396
              +      L  L
Sbjct: 139 RESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 170 SFCSIRHLDLSNNRFTGPVPLGLGS-CSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLS 228
           +  ++R L L N +       GL +    L+        L  S+  ++     L++L LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 229 FNHISGSIKNGIVNLTSLRILELYSN---SLTGLIPRDIGKLTNLESLVLHNNSLS 281
            N I G +      L +L  L L  N    ++ L P  + KL  L+SL L N  ++
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP--LKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 419 FKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478
           F NL+ L L    L   V + + KL KL+ L+LS N++ G +      + +L H++ S N
Sbjct: 48  FVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105

Query: 479 LIS 481
            + 
Sbjct: 106 KLK 108

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 32/210 (15%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN 155
           NL ++S + +S +              + +  L S+ F      T   +        +  
Sbjct: 53  NLPNISRIYVSID--------------VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98

Query: 156 NSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLPD 214
           ++   L            ++ L + N      P    + S           N    S+P 
Sbjct: 99  DALKELP----------LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 215 DIYT--ATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDI--GKLTNL 270
           + +         L L  N  + S++    N T L  + L  N    +I +D   G  +  
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 271 ESLVLHNNSLSGSLPS-SLKNCINLTLLNL 299
             L +   S++ +LPS  L++   L   N 
Sbjct: 208 SLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 43/261 (16%), Positives = 79/261 (30%), Gaps = 48/261 (18%)

Query: 244 TSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNF 303
                  +    +   IP       + ++L L    L      +  N  N++ + +  + 
Sbjct: 11  HQEEDFRVTCKDIQR-IP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 304 FEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI-V 362
               +   +F  L K+  +++ +              ++LT            I P    
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNT-------------RNLT-----------YIDPDALK 102

Query: 363 ALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTS--ANGFK 420
            L  L FL + N  L      +  +       +L          + DN  +TS   N F+
Sbjct: 103 ELPLLKFLGIFNTGLKMFP-DLTKVYSTDIFFIL---------EITDNPYMTSIPVNAFQ 152

Query: 421 NL----QVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPR--FLGNMSSLFHID 474
            L      L L        V  +     KL  + L+ N+    + +  F G  S    +D
Sbjct: 153 GLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 475 FSNNLISGEFPKEFCRLPALT 495
            S   ++    K    L  L 
Sbjct: 212 VSQTSVTALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 38/221 (17%)

Query: 243 LTSLRILELYSNSLTGLIPRDIGKLTNLESLVL-HNNSLSGSLPSSLKNCINLTLLNLQS 301
             S + L+L    L  +       L N+  + +  + +L      S  N   +T + +++
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 302 NFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLP--ITLNSCKSLTAVNLARNQLEGQISP 359
                 I       L  L+ L + +       P    + S      + +  N     I  
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 360 GIVA--LKSLSFLSLSNNSLTNI-TGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSA 416
                       L L NN  T++   A         L  + +  N     +         
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNGT----KLDAVYLNKNKYLTVID-------K 197

Query: 417 NGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLT 457
           + F  +                         +LD+S   +T
Sbjct: 198 DAFGGVY--------------------SGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 32/241 (13%), Positives = 73/241 (30%), Gaps = 23/241 (9%)

Query: 339 SCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLII 398
            C       +    ++ +I P +    S   L L    L  I           N+  + +
Sbjct: 9   ECHQEEDFRVTCKDIQ-RI-PSL--PPSTQTLKLIETHLRTIPS--HAFSNLPNISRIYV 62

Query: 399 PLNFMDETMPDNDRLTSANGFKNLQVLGLAECK-LKGQVPSWIGKLKKLQVLDLSFNQLT 457
            ++   + +  +    S      +  + +   + L    P  + +L  L+ L +    L 
Sbjct: 63  SIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

Query: 458 GSVP--RFLGNMSSLFHIDFSNNLISGEFPKE-FCRLPALTPEQDKNKANESYLEFSLFK 514
              P    + +    F ++ ++N      P   F  L   T          + ++   F 
Sbjct: 119 -MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177

Query: 515 GSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQI-SQLTN 573
           G+          +  ++          A   +     +LD+S  + +  +P +    L  
Sbjct: 178 GTKL------DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKE 230

Query: 574 L 574
           L
Sbjct: 231 L 231

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 1e-09
 Identities = 86/498 (17%), Positives = 151/498 (30%), Gaps = 148/498 (29%)

Query: 61  DCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGN-------LTHLSHLNLSHNRLSGE 113
           D CL   ++C  + ++   WL           ++ N       L  L    L +      
Sbjct: 169 DVCLSYKVQCKMDFKI--FWL-----------NLKNCNSPETVLEML--QKLLYQ----- 208

Query: 114 FPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLI---SWSAWVDS 170
               +  N+    D SSN    +I S    L + L+      N    L+     +A    
Sbjct: 209 ----IDPNWTSRSDHSSNIKL-RIHSIQAEL-RRLLKSKPYENCL--LVLLNVQNAKA-- 258

Query: 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFN 230
                  +LS              C  L T R  F  +T  L     T  SL+  S++  
Sbjct: 259 ---WNAFNLS--------------CKILLTTR--FKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 231 HISGSIKNGIVNLTSLRILELYSNSLTGLIPRD-----------IGKLTNLESLVLHNNS 279
                            +L  Y +     +PR+           I +   +   +   ++
Sbjct: 300 PDE-----------VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWDN 346

Query: 280 LSGSLPSSLKNCINLTLLNLQSN----FFEGDISVFNFSTLLKLRVLD-LGSNLFTGSLP 334
                   L   I  +L  L+       F+  +SVF  S  +   +L  +  ++    + 
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 335 ITLNSC--KSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKN 392
           + +N     SL    + +   E  IS     + S+           N     R ++   N
Sbjct: 406 VVVNKLHKYSL----VEKQPKESTIS-----IPSIYLELKVKLE--NEYALHRSIVDHYN 454

Query: 393 LKVLIIPLNFM--DETMPDNDR---------LTSA------NGFKNLQV-LGLAECKLKG 434
                IP  F   D   P  D+         L +         F+ + +     E K++ 
Sbjct: 455 -----IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509

Query: 435 QVPSWIGK---LKKLQVL----------DLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481
              +W      L  LQ L          D  + +L  ++  FL  +          NLI 
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE--------NLIC 561

Query: 482 GEFPKEFCRLPALTPEQD 499
            ++  +  R+ AL  E +
Sbjct: 562 SKY-TDLLRI-ALMAEDE 577

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 64/417 (15%), Positives = 127/417 (30%), Gaps = 113/417 (27%)

Query: 287 SLKNCINLTLLNLQSN---FFEGDI----SVFNFSTLLKLRVLD-LGSNLFTGSLPITLN 338
            L+      LL L+       +G +    +       L  +V   +   +F     + L 
Sbjct: 139 KLRQA----LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW----LNLK 190

Query: 339 SCKSLTAVNLARNQLEGQISPGIVALKSLSF-LSLSNNSLTNITGAIRILMGCKNLK-VL 396
           +C S   V     +L  QI P   +    S  + L  +S+      +R L+  K  +  L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA---ELRRLLKSKPYENCL 247

Query: 397 IIPLNFMDE------------------TMPDN---DRLTSANGFK---NLQVLGLAECKL 432
           ++    +                    T       D L++A       +   + L   ++
Sbjct: 248 LV----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 433 KGQVPSWIG-KLKKLQVLDLSFNQLTGS-VPRFLGNMSSLFHIDFSNNLISGEFPK--EF 488
           K  +  ++  + + L    L+ N    S +   + +  +    D   ++   +     E 
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA--TWDNWKHVNCDKLTTIIES 361

Query: 489 CRLPALTPEQDKNKANESYLEFSLF-KGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLR 547
             L  L P + +    + +   S+F   ++  I     +L       W     + V ++ 
Sbjct: 362 S-LNVLEPAEYR----KMFDRLSVFPPSAH--IPT--ILL----SLIWFDVIKSDVMVVV 408

Query: 548 LLLH---MLDLSHNNFSGNIPD-------QISQLTNLERM--------------DLSKN- 582
             LH   +++      + +IP        ++     L R               DL    
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 583 -----------HLSGEIP---VSLKRLHFLSAFNVAENNLRGSIP----SGGQFDTF 621
                      HL        ++L R+ FL  F   E  +R        SG   +T 
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTL 524

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 3/112 (2%)

Query: 194 SCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNG-IVNLTSLRILELY 252
                   R   +         +  A +L +L +        ++   +  L  LR L + 
Sbjct: 6   CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFF 304
            + L  + P        L  L L  N+L  SL       ++L  L L  N  
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 277 NNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPIT 336
               +      L    NLT L +++      + + +   L +LR L +  +      P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 337 LNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT 378
            +    L+ +NL+ N LE  +S   V   SL  L LS N L 
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 8e-04
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 93  SIGNLTHLSHLNLSHNRLSGEFPSSLSSNY--IKIIDLSSNHFQGKIPSTIFRLTQNLIT 150
            +    +L+ L + + +               ++ + +  +  +  +    F  T  L  
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSR 84

Query: 151 FNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFT 185
            N+S N+   L SW        S++ L LS N   
Sbjct: 85  LNLSFNALESL-SWKTVQGL--SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 8e-04
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 550 LHMLDLSHNNFSGNIPDQ-ISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNL 608
           L  L + +     ++  + +  L  L  + + K+ L    P +      LS  N++ N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 609 RGSIPSGGQFDTFPSSSFR--GNPDLC 633
             S+                 GNP  C
Sbjct: 93  E-SLS-WKTVQGLSLQELVLSGNPLHC 117

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 212 LPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLE 271
           +   + T  + + L+LS N+I   I + +  + +LRIL L  N +  +   D      LE
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIKKIENLD-AVADTLE 96

Query: 272 SLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSN 327
            L +  N ++ SL S ++  +NL +L + +N       +   + L KL  L L  N
Sbjct: 97  ELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 28/149 (18%)

Query: 347 NLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDET 406
           +     +E  +   +  LK+   L+LS N++  I+     L G +NL++L +  N     
Sbjct: 31  HGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISS----LSGMENLRILSLGRN----- 80

Query: 407 MPDNDRLTSANGF----KNLQVLGLAE---CKLKGQVPSWIGKLKKLQVLDLSFNQLTG- 458
                 +            L+ L ++      L G     I KL  L+VL +S N++T  
Sbjct: 81  -----LIKKIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNW 130

Query: 459 SVPRFLGNMSSLFHIDFSNNLISGEFPKE 487
                L  +  L  +  + N +  ++ + 
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKEN 159

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 11/125 (8%)

Query: 78  HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSG-EFPSSLSSNYIKIIDLSSNHFQGK 136
            L      +   +  ++  L    HL LS N +      S + +  ++I+ L  N  + K
Sbjct: 29  ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISSLSGMEN--LRILSLGRNLIK-K 84

Query: 137 IPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLG-LGSC 195
           I   +  +   L    +S N    L      ++   ++R L +SNN+ T    +  L + 
Sbjct: 85  I-ENLDAVADTLEELWISYNQIASLSG----IEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 196 SRLKT 200
            +L+ 
Sbjct: 140 DKLED 144

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 205 FNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIV-NLTSLRILELYSNSLTGLIPRD 263
            N  T  +P ++     L  + LS N IS ++ N    N+T L  L L  N L  + PR 
Sbjct: 40  GNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97

Query: 264 IGKLTNLESLVLHNNSLSGSLP-SSLKNCINLTLLNLQSN 302
              L +L  L LH N +S  +P  +  +   L+ L + +N
Sbjct: 98  FDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 30/144 (20%), Positives = 52/144 (36%), Gaps = 30/144 (20%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
            LP  I       +L L  N  +  +   + N   L +++L +N ++ L  +    +T L
Sbjct: 24  VLPKGIPRDV--TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80

Query: 271 ESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330
            +L+L  N L   +P                           F  L  LR+L L  N  +
Sbjct: 81  LTLILSYNRLR-CIPPRT------------------------FDGLKSLRLLSLHGNDIS 115

Query: 331 GSLPI-TLNSCKSLTAVNLARNQL 353
             +P    N   +L+ + +  N L
Sbjct: 116 -VVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 51/155 (32%)

Query: 339 SCKSLTAV-----------NLARNQLEGQISPGIV-ALKSLSFLSLSNNSLTNITGAIRI 386
           S K L  +            L  NQ    + P  +   K L+ + LSNN ++        
Sbjct: 18  SNKGLKVLPKGIPRDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRIS-------- 67

Query: 387 LMGCKNLKVLIIPLNFMDETMPDN--DRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLK 444
                              T+ +     +T       L  L L+  +L+   P     LK
Sbjct: 68  -------------------TLSNQSFSNMT------QLLTLILSYNRLRCIPPRTFDGLK 102

Query: 445 KLQVLDLSFNQLTGSVPRFL-GNMSSLFHIDFSNN 478
            L++L L  N ++  VP     ++S+L H+    N
Sbjct: 103 SLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 36/145 (24%)

Query: 137 IPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCS 196
           +P  I R    L    +  N FT        + ++  +  +DLSNNR +           
Sbjct: 25  LPKGIPRDVTEL---YLDGNQFT---LVPKELSNYKHLTLIDLSNNRIS----------- 67

Query: 197 RLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNHISGSIKNGIVN-LTSLRILELYSN 254
                         +L +  ++  T L  L LS+N +   I     + L SLR+L L+ N
Sbjct: 68  --------------TLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGN 112

Query: 255 SLTGLIPRDI-GKLTNLESLVLHNN 278
            ++  +P      L+ L  L +  N
Sbjct: 113 DISV-VPEGAFNDLSALSHLAIGAN 136

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 46/331 (13%), Positives = 90/331 (27%), Gaps = 61/331 (18%)

Query: 90  ISLSIGNLTHLSHLNLSHNRLSGEFPSSL------SSNYIKIIDLSSNHFQGKIPSTIFR 143
              S   L+ L  LNL+  R++    + +        + +  ++L+S         T+  
Sbjct: 64  QRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP 123

Query: 144 LTQNLITFNVSNNSFT----GLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLK 199
           +        +  NS        +     +   C I  L LSNN  T              
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLR-DLLLHDQCQITTLRLSNNPLTA------------- 169

Query: 200 TFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHIS----GSIKNGIVNLTSLRILELYSNS 255
              AG   L   L       TS+  LSL    +       +   +     L+ L +  N 
Sbjct: 170 ---AGVAVLMEGLA----GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222

Query: 256 LTGLIPRDIGKL----TNLESLVLHNNSLS-------GSLPSSLKNCINLTLLNLQSNFF 304
                   + +      +LE L L+ N LS         L  + +    + +   +    
Sbjct: 223 AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282

Query: 305 EGDISVFNFSTLLK----LRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG 360
             +      S + +         +  +L      +  +   +L     A+          
Sbjct: 283 -SEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQ---------L 332

Query: 361 IVALKSLSFLSLSNNSLTNITGAIRILMGCK 391
           +     +  L     S  +           +
Sbjct: 333 LRVEGEVRALLEQLGSSGSP-SGSWSHPQFE 362

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 12/220 (5%)

Query: 284 LPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDL-GSNLFTGSLPITLNSCKS 342
            P      ++  ++  +      D  +    +  +++ +DL  S +   +L   L+ C  
Sbjct: 60  HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119

Query: 343 LTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIP--L 400
           L  ++L   +L   I   +    +L  L+LS  S  +      +L  C  L  L +    
Sbjct: 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179

Query: 401 NFMDETMPDNDRLTSANGFKNLQVLGLAECKLK---GQVPSWIGKLKKLQVLDLSF-NQL 456
           +F ++ +    ++  A+  + +  L L+  +       + + + +   L  LDLS    L
Sbjct: 180 DFTEKHV----QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235

Query: 457 TGSVPRFLGNMSSLFHIDFSN-NLISGEFPKEFCRLPALT 495
                +    ++ L H+  S    I  E   E   +P L 
Sbjct: 236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 14/182 (7%)

Query: 225 LSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSL 284
                + +   +           +    S      +   + + + L++L L    LS  +
Sbjct: 75  FRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI 134

Query: 285 PSSLKNCINLTLLNLQSNFFEGDISVFNFSTLL-KLRVLDLGSNLF---TGSLPITLNSC 340
            ++L    NL  LNL       + ++    +   +L  L+L                +  
Sbjct: 135 VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194

Query: 341 KSLTAVNLARNQLEGQIS-PGIVAL----KSLSFLSLSNNSLTNIT-GAIRILMGCKNLK 394
           +++T +NL+       +    +  L     +L  L LS++    +     +       L+
Sbjct: 195 ETITQLNLSG--YRKNLQKSDLSTLVRRCPNLVHLDLSDS--VMLKNDCFQEFFQLNYLQ 250

Query: 395 VL 396
            L
Sbjct: 251 HL 252

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 31/186 (16%), Positives = 59/186 (31%), Gaps = 13/186 (6%)

Query: 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILEL-YSNSLTGLIPRDIGK-LTNLESLVLHN 277
           + L+ LSL    +S  I N +   ++L  L L   +  +    + +    + L+ L L  
Sbjct: 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177

Query: 278 NSL---SGSLPSSLKNCINLTLLNLQSNFFE-GDISVFNFSTLL-KLRVLDL-GSNLFTG 331
                      +       +T LNL           +         L  LDL  S +   
Sbjct: 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237

Query: 332 SLPITLNSCKSLTAVNLARNQLEGQISP-GIVALKSLSFL-SLSNNSLTNITGAIRILMG 389
                      L  ++L+R      I P  ++ L  +  L +L    +        +   
Sbjct: 238 DCFQEFFQLNYLQHLSLSRCY---DIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA 294

Query: 390 CKNLKV 395
             +L++
Sbjct: 295 LPHLQI 300

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 11/159 (6%)

Query: 172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH 231
           CS   +D  + R    VP G+ + +  +      N +T   P    +  +L++L L  N 
Sbjct: 19  CSGTTVDCRSKRHAS-VPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75

Query: 232 ISGSIKNGIVN-LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKN 290
           +  ++  G+ + LT L +L+L +N LT L      +L +L+ L +  N L+  LP  ++ 
Sbjct: 76  LG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER 133

Query: 291 CINLTLLNLQSNFFEGDISVFN--FSTLLKLRVLDLGSN 327
             +LT L L  N  +   S+ +  F  L  L    L  N
Sbjct: 134 LTHLTHLALDQNQLK---SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 44/161 (27%), Positives = 62/161 (38%), Gaps = 36/161 (22%)

Query: 320 RVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIV-ALKSLSFLSLSNNSLT 378
           ++L L  N  T   P   +S  +L  + L  NQL   +  G+  +L  L+ L L  N LT
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 379 NITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPS 438
            +  A+                 F        DRL       +L+ L +   KL   +P 
Sbjct: 102 VLPSAV-----------------F--------DRLV------HLKELFMCCNKLTE-LPR 129

Query: 439 WIGKLKKLQVLDLSFNQLTGSVPRF-LGNMSSLFHIDFSNN 478
            I +L  L  L L  NQL  S+P      +SSL H     N
Sbjct: 130 GIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 45/169 (26%)

Query: 339 SCKSLTAV-----------NLARNQLEGQISPGIV-ALKSLSFLSLSNNSLTNITGAIRI 386
             K   +V            L  NQ+  ++ PG+  +L +L  L L +N L  +   +  
Sbjct: 27  RSKRHASVPAGIPTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGV-- 83

Query: 387 LMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKL 446
                          F        D LT       L VL L   +L     +   +L  L
Sbjct: 84  ---------------F--------DSLT------QLTVLDLGTNQLTVLPSAVFDRLVHL 114

Query: 447 QVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALT 495
           + L +  N+LT  +PR +  ++ L H+    N +       F RL +LT
Sbjct: 115 KELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 47/167 (28%), Positives = 64/167 (38%), Gaps = 31/167 (18%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
           S+P  I   T    L L  N +          LTSL  L L  N L  L      KLT+L
Sbjct: 21  SVPTGIPAQT--TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78

Query: 271 ESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330
             L L  N L  SLP+ +                        F  L +L+ L L +N   
Sbjct: 79  TYLNLSTNQLQ-SLPNGV------------------------FDKLTQLKELALNTNQLQ 113

Query: 331 GSLPI-TLNSCKSLTAVNLARNQLEGQISPGIV-ALKSLSFLSLSNN 375
            SLP    +    L  + L +NQL+  +  G+   L SL ++ L +N
Sbjct: 114 -SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 37/162 (22%)

Query: 320 RVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIV-ALKSLSFLSLSNNSLT 378
             LDL +N          +   SLT + L  N+L+  +  G+   L SL++L+LS N L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 379 NITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPS 438
           ++   +                 F        D+LT       L+ L L   +L+  +P 
Sbjct: 90  SLPNGV-----------------F--------DKLT------QLKELALNTNQLQ-SLPD 117

Query: 439 WI-GKLKKLQVLDLSFNQLTGSVPR-FLGNMSSLFHIDFSNN 478
            +  KL +L+ L L  NQL  SVP      ++SL +I   +N
Sbjct: 118 GVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 220 TSLEQLSLSFNHISGSIKNGIV-NLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNN 278
             L +L L  N ++  I+       + ++ L+L  N +  +  +    L  L++L L++N
Sbjct: 54  PHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112

Query: 279 SLSGSLPSSLKNCINLTLLNLQSN 302
            +S  +P S ++  +LT LNL SN
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 30/135 (22%)

Query: 244 TSLRILELYSNSLTGLIPRDI-GKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN 302
                L L  N L  +    + G+L +L  L L  N L+  +  +               
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNA-------------- 73

Query: 303 FFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPI-TLNSCKSLTAVNLARNQLEGQISPGI 361
                     F     ++ L LG N     +          L  +NL  NQ+   + PG 
Sbjct: 74  ----------FEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGS 121

Query: 362 VA-LKSLSFLSLSNN 375
              L SL+ L+L++N
Sbjct: 122 FEHLNSLTSLNLASN 136

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.1 bits (121), Expect = 6e-07
 Identities = 24/187 (12%), Positives = 58/187 (31%), Gaps = 28/187 (14%)

Query: 130 SNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP 189
           S   Q  + S +      L    +   +   +           +++ L++ +      V 
Sbjct: 157 SWIEQVDL-SPVLDAMPLLNNLKIKGTNNLSIGKKP-----RPNLKSLEIISGGLPDSVV 210

Query: 190 LGLGSCS-----RLKTFRAGFNYLTGSLPDDIYTA------TSLEQLSLSFNHISGSIKN 238
             +         +L  +    +Y      +            +L+ L +        +  
Sbjct: 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270

Query: 239 GIVN---LTSLRILELYSNSLTG----LIPRDIGKLTNLESLVLHNNSLSG----SLPSS 287
             +    L  L  +++ +  LT     L+   + K+ +L+ + +  N LS      L  S
Sbjct: 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330

Query: 288 LKNCINL 294
           L   I++
Sbjct: 331 LPMKIDV 337

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIPRDIGKLTN 269
           S+P  I ++    +L L  N +  S+ +G+ + LT L  L L  N +  L      KLT 
Sbjct: 21  SVPTGIPSSA--TRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77

Query: 270 LESLVLHNNSLSGSLPSSL-KNCINLTLLNLQSN 302
           L  L LH N L  SLP+ +      L  L L +N
Sbjct: 78  LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTN 110

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 12/97 (12%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIPRDIGKLTN 269
           S+P  I T T  + L L  N I+  ++ G+ + LT L  L+L +N LT L      KLT 
Sbjct: 23  SVPTGIPTTT--QVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79

Query: 270 LESLVLHNNSLSGSLPS----SLKNCINLTLLNLQSN 302
           L  L L++N L  S+P     +LK   +LT + L +N
Sbjct: 80  LTQLSLNDNQLK-SIPRGAFDNLK---SLTHIWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 12/97 (12%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIPRDIGKLTN 269
           S+P  I T    ++L L+ N I+  ++ G+ + L +L+ L   SN LT +      KLT 
Sbjct: 26  SVPAGIPTDK--QRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82

Query: 270 LESLVLHNNSLSGSLPS----SLKNCINLTLLNLQSN 302
           L  L L++N L  S+P     +LK   +LT + L +N
Sbjct: 83  LTQLDLNDNHLK-SIPRGAFDNLK---SLTHIYLYNN 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	653
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.44
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.23
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.89
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.82
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.59
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.53
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.33
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.86
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.2
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.92
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.62
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.45

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-82  Score=729.55  Aligned_cols=604  Identities=30%  Similarity=0.448  Sum_probs=460.8

Q ss_pred             ccCCcCCHHhHHHHHHhhhcCCCCC--CCCCCCCCCccccceEeCCCCCEEEEEcCCCCccee---cc------------
Q 041562           29 SFCQACNQIDQDSLLSLGFNISSPG--LNWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGT---IS------------   91 (653)
Q Consensus        29 ~~~~~~~~~~~~~ll~~k~~~~~~~--~~W~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~---~~------------   91 (653)
                      ++++++.++|++||++||+++.++.  ++|+.++|||+|+||+|+ .|||++|+|+++++.|.   ++            
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l   82 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL   82 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred             CccccCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence            3444557889999999999998775  799888899999999998 79999999999999987   44            


Q ss_pred             -----------ccccCCCCCCEEECCCCCCCCCCCc--cccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCc
Q 041562           92 -----------LSIGNLTHLSHLNLSHNRLSGEFPS--SLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNS  157 (653)
Q Consensus        92 -----------~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~  157 (653)
                                 +.++++++|++|||++|.++|.+|.  .++. ++|++|+|++|.+.+.+|..++..+++|++|++++|.
T Consensus        83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  162 (768)
T 3rgz_A           83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS  162 (768)
T ss_dssp             ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred             CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence                       4678889999999999999888887  6666 8888888888888877777655567777777777777


Q ss_pred             CcccCChhhh-h----------------------cCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccc
Q 041562          158 FTGLISWSAW-V----------------------DSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPD  214 (653)
Q Consensus       158 l~~~~~~~~~-~----------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~  214 (653)
                      +++..+..+. .                      ..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|.
T Consensus       163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~  241 (768)
T 3rgz_A          163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR  241 (768)
T ss_dssp             CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH
T ss_pred             cCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH
Confidence            7665554310 1                      2456677777777777766665 77777777777777777777777


Q ss_pred             cccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCC-CCCCeEEeecCcCcccCCccccCCCC
Q 041562          215 DIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKL-TNLESLVLHNNSLSGSLPSSLKNCIN  293 (653)
Q Consensus       215 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~  293 (653)
                      .+..+++|++|++++|.+.+.+|..  .+++|++|++++|++++.+|..+... ++|++|++++|.+++.+|..++++++
T Consensus       242 ~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  319 (768)
T 3rgz_A          242 AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL  319 (768)
T ss_dssp             HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred             HHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence            7777777777777777776655543  56667777777777766777766654 77888888888877777777777888


Q ss_pred             CcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcC---------------------------CCCCCeE
Q 041562          294 LTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS---------------------------CKSLTAV  346 (653)
Q Consensus       294 L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---------------------------l~~L~~L  346 (653)
                      |++|++++|.+.|.+|...+..+++|++|++++|.+++.+|..+..                           +++|++|
T Consensus       320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L  399 (768)
T 3rgz_A          320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL  399 (768)
T ss_dssp             CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred             ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence            8888888887777777655777777777777777776655555443                           3455666


Q ss_pred             EccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEE
Q 041562          347 NLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLG  426 (653)
Q Consensus       347 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~  426 (653)
                      ++++|.+++.+|..+..+++|++|++++|.++....  ..+..+++|+.|++++|.+.+.+|..+.     .+++|++|+
T Consensus       400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~  472 (768)
T 3rgz_A          400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLNMLEGEIPQELM-----YVKTLETLI  472 (768)
T ss_dssp             ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGG-----GCTTCCEEE
T ss_pred             ECCCCccccccCHHHhcCCCCCEEECcCCcccCccc--HHHhcCCCCCEEECCCCcccCcCCHHHc-----CCCCceEEE
Confidence            666666666666666777777777777776653221  3456677788888888887777765443     578888889


Q ss_pred             ccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccccccccc
Q 041562          427 LAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANES  506 (653)
Q Consensus       427 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  506 (653)
                      +++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..+..+++|+.+++.++....
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            99998888888888888899999999999888888888888899999999999988888888888888888887665432


Q ss_pred             ccccccccCCcc------------------------------------------------ccc--------------ccc
Q 041562          507 YLEFSLFKGSNN------------------------------------------------FIG--------------EYK  524 (653)
Q Consensus       507 ~~~~~~~~~~~~------------------------------------------------~~~--------------~~~  524 (653)
                      .++...+.....                                                ...              ...
T Consensus       553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~  632 (768)
T 3rgz_A          553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG  632 (768)
T ss_dssp             BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred             cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence            222111110000                                                000              001


Q ss_pred             ccccccccc-ceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeec
Q 041562          525 KILTFHEQY-TWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNV  603 (653)
Q Consensus       525 ~~~~~~~~~-~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  603 (653)
                      .+..++.+. .++|.+|.+++.++ .|+.|||++|+++|.+|..|+++++|++||||+|+++|.+|..+..+++|++||+
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMP-YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred             cccEEECcCCcccccCCHHHhccc-cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence            111122221 27899999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCCCCCCCCCcCCCccCCCCCCCCCCCCCCCCCCC
Q 041562          604 AENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCSVQP  645 (653)
Q Consensus       604 s~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~~~~c~~~~  645 (653)
                      ++|+++|.||++++|.+|+..+|.|||+|||+|+. +|....
T Consensus       712 s~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             CSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             cCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            99999999999999999999999999999999985 897543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.9e-59  Score=536.07  Aligned_cols=520  Identities=31%  Similarity=0.440  Sum_probs=410.1

Q ss_pred             CCEEEEEcCCCCcceecccc---ccCCCCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcE
Q 041562           74 GRVSHLWLPWKGLTGTISLS---IGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLIT  150 (653)
Q Consensus        74 ~~v~~L~L~~~~l~g~~~~~---l~~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  150 (653)
                      .++++|+|+++.+++..+..   +.++++|++|++++|.+++.+|. ...++|++|+|++|.+++.+|.  +..+++|++
T Consensus       151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~  227 (768)
T 3rgz_A          151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPF--LGDCSALQH  227 (768)
T ss_dssp             TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCB--CTTCCSCCE
T ss_pred             CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcc--cccCCCCCE
Confidence            47899999999999988877   88899999999999998876654 2338899999999999877776  667889999


Q ss_pred             EEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCC-CCCCEEeccC
Q 041562          151 FNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSF  229 (653)
Q Consensus       151 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~  229 (653)
                      |++++|.+++.+|..+.  .+++|++|++++|.+++.+|..  .+++|++|++++|.+++.+|..+... ++|++|++++
T Consensus       228 L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~  303 (768)
T 3rgz_A          228 LDISGNKLSGDFSRAIS--TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG  303 (768)
T ss_dssp             EECCSSCCCSCHHHHTT--TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS
T ss_pred             EECcCCcCCCcccHHHh--cCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC
Confidence            99999999888776654  6889999999999888877765  78889999999998888888888775 8899999999


Q ss_pred             CcCcccccccccCCCCCcEEEcccCcCCcccCcc-ccCCCCCCeEEeecCcCcccCCccccCCC-CCcEEEccCCcCccc
Q 041562          230 NHISGSIKNGIVNLTSLRILELYSNSLTGLIPRD-IGKLTNLESLVLHNNSLSGSLPSSLKNCI-NLTLLNLQSNFFEGD  307 (653)
Q Consensus       230 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~  307 (653)
                      |.+.+.+|..++++++|++|++++|++++.+|.. ++.+++|++|++++|++++.+|..+.+++ +|++|++++|.+++.
T Consensus       304 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~  383 (768)
T 3rgz_A          304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP  383 (768)
T ss_dssp             SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred             CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC
Confidence            9888888888889999999999999888777765 88888999999999988888888888887 889999999888877


Q ss_pred             cChhhccC--CCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchh
Q 041562          308 ISVFNFST--LLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIR  385 (653)
Q Consensus       308 i~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  385 (653)
                      ++. .+..  +++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.++...  ..
T Consensus       384 ~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~  460 (768)
T 3rgz_A          384 ILP-NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI--PQ  460 (768)
T ss_dssp             CCT-TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC--CG
T ss_pred             cCh-hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC--CH
Confidence            764 4444  778888888888888888888888888888888888888888888888888888888888887422  13


Q ss_pred             hccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhc
Q 041562          386 ILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLG  465 (653)
Q Consensus       386 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  465 (653)
                      .+..+++|++|++++|.+.+.+|...     ..+++|++|++++|++++.+|.+++.+++|++|++++|++.+.+|..+.
T Consensus       461 ~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~  535 (768)
T 3rgz_A          461 ELMYVKTLETLILDFNDLTGEIPSGL-----SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG  535 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGG-----GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred             HHcCCCCceEEEecCCcccCcCCHHH-----hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence            46678888888888888888877644     3678888888888888888888888888888888888888888888888


Q ss_pred             CCCCCCEEEccCCcCcccCCccccCCCCCCcccccc--------------------------------------------
Q 041562          466 NMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKN--------------------------------------------  501 (653)
Q Consensus       466 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~--------------------------------------------  501 (653)
                      .+++|++|++++|+++|.+|..+.....+..+....                                            
T Consensus       536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  615 (768)
T 3rgz_A          536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI  615 (768)
T ss_dssp             GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred             CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence            888888888888888888887665543322211100                                            


Q ss_pred             --cc--cccccccccccCCcccccccc--------------ccccccccc-ceeeeCChHHHhHHhccCeeecCCccCcc
Q 041562          502 --KA--NESYLEFSLFKGSNNFIGEYK--------------KILTFHEQY-TWKTTASAAVSLLRLLLHMLDLSHNNFSG  562 (653)
Q Consensus       502 --~~--~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~-~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~  562 (653)
                        +.  ......+........+....+              .+..+..+. .++|.||..++.++ .|++|||++|+++|
T Consensus       616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~-~L~~LdLs~N~l~g  694 (768)
T 3rgz_A          616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR-GLNILDLSSNKLDG  694 (768)
T ss_dssp             TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEE
T ss_pred             ccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC-CCCEEECCCCcccC
Confidence              00  000000000011111111111              112222222 27899999999999 99999999999999


Q ss_pred             ccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCc-ccc
Q 041562          563 NIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENN-LRG  610 (653)
Q Consensus       563 ~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~-l~g  610 (653)
                      .+|..++++++|++||||+|+++|.||+. ..+.++....+.+|+ +.|
T Consensus       695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg  742 (768)
T 3rgz_A          695 RIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG  742 (768)
T ss_dssp             CCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred             cCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence            99999999999999999999999999975 456667777788886 554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.8e-59  Score=521.62  Aligned_cols=473  Identities=21%  Similarity=0.295  Sum_probs=315.4

Q ss_pred             CCHHhHHHHHHhhhcCCCCC-----------CCCCCCCCCccc---cceEeCCCCCEEEEEcCCCCcceeccccccCCCC
Q 041562           34 CNQIDQDSLLSLGFNISSPG-----------LNWSSSTDCCLW---EGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTH   99 (653)
Q Consensus        34 ~~~~~~~~ll~~k~~~~~~~-----------~~W~~~~~~c~w---~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~   99 (653)
                      ....|+.||.+++.++.++.           .+|+.+.+||.|   .||+|+..|||++|+|++++++|.+|+++++|++
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~  106 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTE  106 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCcc
Confidence            34579999999999876542           379888999999   9999998899999999999999999999999999


Q ss_pred             CCEEECCCCCC------CC------CCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEcc-------------
Q 041562          100 LSHLNLSHNRL------SG------EFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVS-------------  154 (653)
Q Consensus       100 L~~L~Ls~n~~------~~------~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls-------------  154 (653)
                      |++|+|++|.+      .|      .+|... ...|+ +++++|.+.+.+|..+...+..+..+++.             
T Consensus       107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~-~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~  184 (636)
T 4eco_A          107 LEVLALGSHGEKVNERLFGPKGISANMSDEQ-KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK  184 (636)
T ss_dssp             CCEEESCCGGGGGTCCSBSTTSBCTTCCHHH-HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred             ceEEECcCCccccCCccccccccccCchHHH-HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence            99999999976      22      233222 25566 77777877777776544322222222222             


Q ss_pred             -------CCcCcccCChhhhhcCCCCCCEEEccCCcCccC-----------------CCccCC--CCCCCCEEEcccCCC
Q 041562          155 -------NNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGP-----------------VPLGLG--SCSRLKTFRAGFNYL  208 (653)
Q Consensus       155 -------~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~l  208 (653)
                             +|.+++ +|..+.  ++++|++|++++|.+++.                 +|..++  ++++|++|++++|.+
T Consensus       185 ~l~l~~~~n~l~~-ip~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l  261 (636)
T 4eco_A          185 DTQIGQLSNNITF-VSKAVM--RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN  261 (636)
T ss_dssp             TTTTTCCSCEEEE-ECGGGG--GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT
T ss_pred             hhhhccccCCCcc-CCHHHh--cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC
Confidence                   455666 555433  566666666666666664                 666666  666666666666666


Q ss_pred             CCCccccccCCCCCCEEeccCCc-Ccc-cccccccCC------CCCcEEEcccCcCCcccCc--cccCCCCCCeEEeecC
Q 041562          209 TGSLPDDIYTATSLEQLSLSFNH-ISG-SIKNGIVNL------TSLRILELYSNSLTGLIPR--DIGKLTNLESLVLHNN  278 (653)
Q Consensus       209 ~~~~p~~l~~l~~L~~L~Ls~n~-i~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n  278 (653)
                      .+.+|..++++++|++|++++|. +++ .+|..++++      ++|++|++++|+++ .+|.  .++++++|++|++++|
T Consensus       262 ~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N  340 (636)
T 4eco_A          262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN  340 (636)
T ss_dssp             CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred             CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence            66666666666666666666666 665 566666554      66666666666666 5565  6666666666666666


Q ss_pred             cCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCC-cCEEEccCCcccccCCccCcCCC--CCCeEEccCccccc
Q 041562          279 SLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLK-LRVLDLGSNLFTGSLPITLNSCK--SLTAVNLARNQLEG  355 (653)
Q Consensus       279 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~  355 (653)
                      +++|.+| .+..+++|++|++++|.++ .+|. .+..+++ |++|++++|.++ .+|..+..++  +|++|++++|.+++
T Consensus       341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~  416 (636)
T 4eco_A          341 QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPA-NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS  416 (636)
T ss_dssp             CCEEECC-CCEEEEEESEEECCSSEEE-ECCT-TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             cCccchh-hhCCCCCCCEEECCCCccc-cccH-hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence            6666666 6666666666666666666 5553 4566666 666666666666 5565555443  66666666666666


Q ss_pred             cCchhhc-------CCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEcc
Q 041562          356 QISPGIV-------ALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLA  428 (653)
Q Consensus       356 ~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~  428 (653)
                      ..|..+.       .+++|++|++++|.++.++..  .+..+                             ++|++|+++
T Consensus       417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~--~~~~l-----------------------------~~L~~L~Ls  465 (636)
T 4eco_A          417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE--LFSTG-----------------------------SPLSSINLM  465 (636)
T ss_dssp             TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH--HHHTT-----------------------------CCCSEEECC
T ss_pred             cchhhhcccccccccCCCCCEEECcCCccCcCCHH--HHccC-----------------------------CCCCEEECC
Confidence            6665555       455666666666665544432  12233                             445555555


Q ss_pred             CCcCcccchhhh--------cCCccCCeeeCcCCcCccCCchhhc--CCCCCCEEEccCCcCcccCCccccCCCCCCccc
Q 041562          429 ECKLKGQVPSWI--------GKLKKLQVLDLSFNQLTGSVPRFLG--NMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQ  498 (653)
Q Consensus       429 ~n~l~~~~p~~l--------~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  498 (653)
                      +|+++ .+|...        .++++|++|++++|+++ .+|..+.  .+++|++|++++|++++ +|..+..++      
T Consensus       466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~------  536 (636)
T 4eco_A          466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS------  536 (636)
T ss_dssp             SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS------
T ss_pred             CCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCC------
Confidence            55544 333221        12236667777777666 5555554  66677777777776665 555554443      


Q ss_pred             ccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeec------CCccCccccccccccCC
Q 041562          499 DKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDL------SHNNFSGNIPDQISQLT  572 (653)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~L------s~N~l~~~~p~~l~~l~  572 (653)
                                                                        .|+.|+|      ++|++.+.+|..+++++
T Consensus       537 --------------------------------------------------~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~  566 (636)
T 4eco_A          537 --------------------------------------------------TLKGFGIRNQRDAQGNRTLREWPEGITLCP  566 (636)
T ss_dssp             --------------------------------------------------SCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred             --------------------------------------------------CCCEEECCCCcccccCcccccChHHHhcCC
Confidence                                                              4555555      56778888888888888


Q ss_pred             CCCeEeCCCCeeeeecCcccccCCCCCeeecCCCccc
Q 041562          573 NLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR  609 (653)
Q Consensus       573 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  609 (653)
                      +|++|||++|++ +.+|..+.  ++|++|++++|++.
T Consensus       567 ~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          567 SLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             SCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             CCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            888888888888 57887765  78888888888776

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.5e-56  Score=502.96  Aligned_cols=552  Identities=20%  Similarity=0.202  Sum_probs=396.1

Q ss_pred             CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562           74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN  152 (653)
Q Consensus        74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  152 (653)
                      .++++|+|+++.+++..+..|+++++|++|+|++|.+++..|..++. ++|++|+|++|.++ .+|...+..+++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEE
Confidence            57999999999999988889999999999999999999998988877 99999999999999 78887778899999999


Q ss_pred             ccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCcccccc--CCCCCCEEeccCC
Q 041562          153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIY--TATSLEQLSLSFN  230 (653)
Q Consensus       153 Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n  230 (653)
                      +++|.+++..+..+.  .+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.  .+++|++|++++|
T Consensus       104 L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CCSSCCCCCCSCTTT--TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             CCCCccCccChhHcc--ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence            999999987766554  799999999999999999899999999999999999999977766554  5689999999999


Q ss_pred             cCcccccccccCC---------------------------CCCcEEEcccCcCCcccCccccCCCC--CCeEEeecCcCc
Q 041562          231 HISGSIKNGIVNL---------------------------TSLRILELYSNSLTGLIPRDIGKLTN--LESLVLHNNSLS  281 (653)
Q Consensus       231 ~i~~~~~~~l~~l---------------------------~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~  281 (653)
                      .+.+..|..+..+                           ++|++|++++|.+++..|..+..++.  |++|++++|.++
T Consensus       182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~  261 (680)
T 1ziw_A          182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN  261 (680)
T ss_dssp             CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred             cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence            9987777666543                           45777777788887777777777644  888888888888


Q ss_pred             ccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccc-----cCCc----cCcCCCCCCeEEccCcc
Q 041562          282 GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG-----SLPI----TLNSCKSLTAVNLARNQ  352 (653)
Q Consensus       282 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~-----~~~~----~l~~l~~L~~L~L~~n~  352 (653)
                      +..|..++.+++|++|++++|.+.+..+ ..+..+++|++|++++|...+     .+|.    .+..+++|++|++++|.
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~  340 (680)
T 1ziw_A          262 VVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND  340 (680)
T ss_dssp             EECTTTTTTCTTCCEEECCSCCBSEECT-TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred             ccCcccccCcccccEeeCCCCccCccCh-hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence            7777778888888888888888875544 367777788888887765442     2222    56677788888888888


Q ss_pred             ccccCchhhcCCCCCCEEECCCCCCC--CCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCC
Q 041562          353 LEGQISPGIVALKSLSFLSLSNNSLT--NITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAEC  430 (653)
Q Consensus       353 l~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n  430 (653)
                      +.+..+..+..+++|++|++++|.+.  .++.........++|+.|++++|.+.+..+..+     ..+++|++|++++|
T Consensus       341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N  415 (680)
T 1ziw_A          341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-----SWLGHLEVLDLGLN  415 (680)
T ss_dssp             BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-----TTCTTCCEEECCSS
T ss_pred             cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-----hCCCCCCEEeCCCC
Confidence            87777777777777777777777543  111111001122456666666666655544322     34566666666666


Q ss_pred             cCcccch-hhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCc--ccCCccccCCCCCCcccccccccccc
Q 041562          431 KLKGQVP-SWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS--GEFPKEFCRLPALTPEQDKNKANESY  507 (653)
Q Consensus       431 ~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~l~~~~~~~~~~  507 (653)
                      .+++.+| ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.  +.+|..|..+++|+.++++++.....
T Consensus       416 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i  495 (680)
T 1ziw_A          416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI  495 (680)
T ss_dssp             CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC
T ss_pred             cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC
Confidence            6655444 45556666666666666665555555555666666666666554  34555555566666555554432211


Q ss_pred             cc--cccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeee
Q 041562          508 LE--FSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLS  585 (653)
Q Consensus       508 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  585 (653)
                      ..  +........+....+++..+.... +.+..+..++.++ .|++|+|++|+++...+..|+.+++|++|||++|+++
T Consensus       496 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  573 (680)
T 1ziw_A          496 NDDMLEGLEKLEILDLQHNNLARLWKHA-NPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN  573 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCGGGGSTT-STTSCCCTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ChhhhccccccCEEeCCCCCccccchhh-ccCCcchhhcCCC-CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC
Confidence            11  111111122222223322221100 0011112356666 8999999999999655567999999999999999999


Q ss_pred             eecCcccccCCCCCeeecCCCcccccCCCC-C-CCCCcCCCccCCCCCCCCCC
Q 041562          586 GEIPVSLKRLHFLSAFNVAENNLRGSIPSG-G-QFDTFPSSSFRGNPDLCGAI  636 (653)
Q Consensus       586 ~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~-~~~~~~~~~~~gn~~lc~~~  636 (653)
                      +..+..+..+++|++|++++|++++..|.. + .+.++....+.|||..|..+
T Consensus       574 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             cCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            666666789999999999999999766643 1 46778888899999999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.7e-56  Score=505.21  Aligned_cols=432  Identities=22%  Similarity=0.255  Sum_probs=275.7

Q ss_pred             CCcCCHHhHHHHHHhhhcCCCCCCCCCCCC-----CC--ccc------------cceEeCCCCCEEEEEcCCCCcceecc
Q 041562           31 CQACNQIDQDSLLSLGFNISSPGLNWSSST-----DC--CLW------------EGIKCDANGRVSHLWLPWKGLTGTIS   91 (653)
Q Consensus        31 ~~~~~~~~~~~ll~~k~~~~~~~~~W~~~~-----~~--c~w------------~gv~c~~~~~v~~L~L~~~~l~g~~~   91 (653)
                      .+++..+|++||++||+++.++  +|+.+.     +|  |.|            .||+|+..+||++|+|+++++.|.+|
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~--~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip  340 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK--NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP  340 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG--GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEEC
T ss_pred             ccccchHHHHHHHHHHHHcCCC--CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCc
Confidence            3445578999999999999776  797543     56  999            99999988999999999999999999


Q ss_pred             ccccCCCCCCEEEC-CCCCCCCCCCccccCC--C--------cCE------EE-ccCCCCCCCCchHHH----------h
Q 041562           92 LSIGNLTHLSHLNL-SHNRLSGEFPSSLSSN--Y--------IKI------ID-LSSNHFQGKIPSTIF----------R  143 (653)
Q Consensus        92 ~~l~~l~~L~~L~L-s~n~~~~~~p~~~~~~--~--------L~~------L~-Ls~n~l~~~ip~~~~----------~  143 (653)
                      ++|++|++|++|+| ++|.+.|..|......  .        ++.      ++ .....+.+.++..+.          .
T Consensus       341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~  420 (876)
T 4ecn_A          341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD  420 (876)
T ss_dssp             GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred             hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence            99999999999999 8898877644221000  0        000      00 000000000000000          0


Q ss_pred             cCCCCcEEEccC--CcCcccCChhhhhcCCCCCCEEEccCCcCcc-----------------CCCccCC--CCCCCCEEE
Q 041562          144 LTQNLITFNVSN--NSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-----------------PVPLGLG--SCSRLKTFR  202 (653)
Q Consensus       144 ~l~~L~~L~Ls~--n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------~~~~~~~--~l~~L~~L~  202 (653)
                      ....++.+.+..  |.+++ +|..+.  ++++|++|+|++|.+++                 .+|..++  ++++|++|+
T Consensus       421 ~~l~l~~l~l~~~~N~L~~-IP~~l~--~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~  497 (876)
T 4ecn_A          421 SRISLKDTQIGNLTNRITF-ISKAIQ--RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE  497 (876)
T ss_dssp             CCCCCCTTTTTCCSCEEEE-ECGGGG--GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             cccchhhceeccccCcccc-hhHHHh--cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence            111222223322  55555 444433  46666666666666665                 3777766  777777777


Q ss_pred             cccCCCCCCccccccCCCCCCEEeccCCc-Ccc-cccccccCCC-------CCcEEEcccCcCCcccCc--cccCCCCCC
Q 041562          203 AGFNYLTGSLPDDIYTATSLEQLSLSFNH-ISG-SIKNGIVNLT-------SLRILELYSNSLTGLIPR--DIGKLTNLE  271 (653)
Q Consensus       203 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-i~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~p~--~l~~l~~L~  271 (653)
                      +++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+++++       +|++|++++|+++ .+|.  .++++++|+
T Consensus       498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~  576 (876)
T 4ecn_A          498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG  576 (876)
T ss_dssp             EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred             CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence            77777777777777777778888887776 776 6676555544       7888888888777 6676  777777888


Q ss_pred             eEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCC-cCEEEccCCcccccCCccCcCCCC--CCeEEc
Q 041562          272 SLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLK-LRVLDLGSNLFTGSLPITLNSCKS--LTAVNL  348 (653)
Q Consensus       272 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L  348 (653)
                      .|+|++|.++ .+| .+..+++|+.|++++|.+. .+|. .+..+++ |+.|++++|.++ .+|..+..++.  |+.|++
T Consensus       577 ~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~L  651 (876)
T 4ecn_A          577 LLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPE-DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF  651 (876)
T ss_dssp             EEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCT-TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEEC
T ss_pred             EEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchH-HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEEC
Confidence            8888888777 666 6777777888888888777 6664 5677777 888888888777 66766666543  778888


Q ss_pred             cCccccccCchh---hc--CCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccC---CCCCC
Q 041562          349 ARNQLEGQISPG---IV--ALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTS---ANGFK  420 (653)
Q Consensus       349 ~~n~l~~~~~~~---l~--~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~---~~~~~  420 (653)
                      ++|.+.+.+|..   +.  ..++|+.|++++|.++.++..  .+..+++|+.|++++|.+. .+|.......   ..+++
T Consensus       652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~--~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~  728 (876)
T 4ecn_A          652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE--LFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTY  728 (876)
T ss_dssp             CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH--HHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGG
T ss_pred             cCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHH--HHccCCCCCEEECCCCcCC-ccChHHhccccccccccC
Confidence            888777655432   22  334778888888887765542  2345566666666666655 3333211100   11223


Q ss_pred             CcCEEEccCCcCcccchhhhc--CCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCC
Q 041562          421 NLQVLGLAECKLKGQVPSWIG--KLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN  478 (653)
Q Consensus       421 ~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  478 (653)
                      +|++|+|++|+++ .+|..+.  .+++|+.|+|++|++.+ +|..+..+++|+.|+|++|
T Consensus       729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N  786 (876)
T 4ecn_A          729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ  786 (876)
T ss_dssp             GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCC
T ss_pred             CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCC
Confidence            5555555555555 4454444  55555555555555554 4444555555555555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.2e-55  Score=487.42  Aligned_cols=490  Identities=19%  Similarity=0.188  Sum_probs=283.9

Q ss_pred             CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562           74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN  152 (653)
Q Consensus        74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  152 (653)
                      .+++.|+|+++.+++..+.+|+++++|++|+|++|.+.+..|..|.. ++|++|+|++|.+++..|. .+..+++|++|+
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~  111 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLF  111 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEEE
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEee
Confidence            46888999999998888888999999999999999988888888877 8899999999988854444 456788899999


Q ss_pred             ccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCC--EEeccCC
Q 041562          153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLE--QLSLSFN  230 (653)
Q Consensus       153 Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~Ls~n  230 (653)
                      +++|.+++..+..+.  .+++|++|++++|.+++.....+..+++|++|++++|.+++..|..+..+++|+  +|++++|
T Consensus       112 L~~n~i~~l~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          112 FIQTGISSIDFIPLH--NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             CTTSCCSCGGGSCCT--TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred             ccccCcccCCcchhc--cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence            999988886554433  688899999999988875444555588899999999988877788888888888  8888888


Q ss_pred             cCcccccccccCCCCCcEEEcccCcCCcccCccccCCC-------------------------------CCCeEEeecCc
Q 041562          231 HISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLT-------------------------------NLESLVLHNNS  279 (653)
Q Consensus       231 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-------------------------------~L~~L~L~~n~  279 (653)
                      .+.+..|..+. ..+|++|++++|..   ++..+..+.                               +|+.|++++|.
T Consensus       190 ~l~~~~~~~~~-~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~  265 (606)
T 3t6q_A          190 DIAGIEPGAFD-SAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY  265 (606)
T ss_dssp             CCCEECTTTTT-TCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC
T ss_pred             ccCccChhHhh-hccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc
Confidence            88876665554 35788888877751   122222222                               34444444444


Q ss_pred             CcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCch
Q 041562          280 LSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISP  359 (653)
Q Consensus       280 l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  359 (653)
                      +++..+..+..+++|++|++++|.++ .+|. .+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++.
T Consensus       266 l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  343 (606)
T 3t6q_A          266 FFNISSNTFHCFSGLQELDLTATHLS-ELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT  343 (606)
T ss_dssp             CSSCCTTTTTTCTTCSEEECTTSCCS-CCCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred             cCccCHHHhccccCCCEEeccCCccC-CCCh-hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence            44444444444444444444444444 3332 344444444444444444444444444444444444444444433332


Q ss_pred             h-hcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchh
Q 041562          360 G-IVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPS  438 (653)
Q Consensus       360 ~-l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~  438 (653)
                      . +..+++|++|++++|.++.+......+..+++|++|++++|.+.+..+..+     ..+++|++|++++|++++..+.
T Consensus       344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~  418 (606)
T 3t6q_A          344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF-----KECPQLELLDLAFTRLKVKDAQ  418 (606)
T ss_dssp             STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT-----TTCTTCSEEECTTCCEECCTTC
T ss_pred             hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh-----cCCccCCeEECCCCcCCCcccc
Confidence            2 444444444444444444332112233444444444444444443333221     2344444444444444433322


Q ss_pred             -hhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCccc---CCccccCCCCCCccccccccccccccccccc
Q 041562          439 -WIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGE---FPKEFCRLPALTPEQDKNKANESYLEFSLFK  514 (653)
Q Consensus       439 -~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  514 (653)
                       .+..+++|++|++++|++.+..|..+..+++|++|++++|++++.   .+..+..++                      
T Consensus       419 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~----------------------  476 (606)
T 3t6q_A          419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG----------------------  476 (606)
T ss_dssp             CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT----------------------
T ss_pred             hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC----------------------
Confidence             244444444444444444444444444444444444444444431   112233333                      


Q ss_pred             CCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCccccc
Q 041562          515 GSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKR  594 (653)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~  594 (653)
                                                        +|++|+|++|.+++..|..|+.+++|++|||++|++++.+|..+..
T Consensus       477 ----------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  522 (606)
T 3t6q_A          477 ----------------------------------RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH  522 (606)
T ss_dssp             ----------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT
T ss_pred             ----------------------------------CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc
Confidence                                              5555555555555555555555555555555555555555555555


Q ss_pred             CCCCCeeecCCCcccccCCCC-CCCCCcCCCccCCCCCCCC
Q 041562          595 LHFLSAFNVAENNLRGSIPSG-GQFDTFPSSSFRGNPDLCG  634 (653)
Q Consensus       595 l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lc~  634 (653)
                      ++.| +|++++|++++.+|.. ..+..+....+.|||..|.
T Consensus       523 l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          523 LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             CCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             cccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            5555 5555555555444432 2233444455555555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.6e-53  Score=477.33  Aligned_cols=488  Identities=20%  Similarity=0.221  Sum_probs=315.9

Q ss_pred             CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562           74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN  152 (653)
Q Consensus        74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  152 (653)
                      .++++|+|+++.+++..+..|.++++|++|+|++|.+++..|..|.. ++|++|+|++|.+++..|. .+..+++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCEEE
Confidence            57899999999999888889999999999999999999888888876 8999999999999854454 456799999999


Q ss_pred             ccCCcCcccCChhhhhcCCCCCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCC----EEec
Q 041562          153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLE----QLSL  227 (653)
Q Consensus       153 Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L  227 (653)
                      +++|.+++..+..+.  .+++|++|++++|.+++ .+|..++++++|++|++++|.+++..|..+..+++|+    +|++
T Consensus       111 L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l  188 (606)
T 3vq2_A          111 AVETKLASLESFPIG--QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM  188 (606)
T ss_dssp             CTTSCCCCSSSSCCT--TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred             ccCCccccccccccC--CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence            999999887765543  78999999999999886 5688999999999999999999987777777666554    8999


Q ss_pred             cCCcCcccccccccCCCCCcEEEcccCcCC-cccCccccCCCCCCeEEee------------------------------
Q 041562          228 SFNHISGSIKNGIVNLTSLRILELYSNSLT-GLIPRDIGKLTNLESLVLH------------------------------  276 (653)
Q Consensus       228 s~n~i~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~------------------------------  276 (653)
                      ++|.+.+..+..+.. .+|++|++++|.+. +..|..++++++|+.+++.                              
T Consensus       189 ~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  267 (606)
T 3vq2_A          189 SLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR  267 (606)
T ss_dssp             TTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred             cCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence            999998655555544 48999999999886 3455666777777766663                              


Q ss_pred             ---cCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccc
Q 041562          277 ---NNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL  353 (653)
Q Consensus       277 ---~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  353 (653)
                         .+.+.+.+|. +..+++|+.|++++|.+. .++  .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|..
T Consensus       268 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~  340 (606)
T 3vq2_A          268 LTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG  340 (606)
T ss_dssp             ECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS
T ss_pred             ccccccccccccc-cccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcC
Confidence               3344444444 555566666666666654 344  455556666666666666 3455 23 556666666666644


Q ss_pred             cccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCc
Q 041562          354 EGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLK  433 (653)
Q Consensus       354 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~  433 (653)
                      .+..  .+..+++|++|++++|.++.+......+..+++|++|++++|.+.+. |.     .+..+++|++|++++|++.
T Consensus       341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~-----~~~~l~~L~~L~l~~n~l~  412 (606)
T 3vq2_A          341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SA-----NFMGLEELQHLDFQHSTLK  412 (606)
T ss_dssp             CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CC-----CCTTCTTCCEEECTTSEEE
T ss_pred             ccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hh-----hccCCCCCCeeECCCCccC
Confidence            3332  34455666666666665554322223445556666666666655432 11     1234556666666666665


Q ss_pred             ccch-hhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcc-cCCccccCCCCCCcccccccccccccccc
Q 041562          434 GQVP-SWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISG-EFPKEFCRLPALTPEQDKNKANESYLEFS  511 (653)
Q Consensus       434 ~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~  511 (653)
                      +..| ..+..+++|++|++++|++.+..|..+..+++|++|++++|++++ .+|..+..+++|+.++++++.        
T Consensus       413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~--------  484 (606)
T 3vq2_A          413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ--------  484 (606)
T ss_dssp             STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC--------
T ss_pred             CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc--------
Confidence            5544 455556666666666666665555556666666666666666655 245555555555544443321        


Q ss_pred             cccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcc
Q 041562          512 LFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVS  591 (653)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~  591 (653)
                                             +.+..|..++.++ .|++|+|++|++++.+|..|+++++|++|||++|+++ .+|..
T Consensus       485 -----------------------l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~  539 (606)
T 3vq2_A          485 -----------------------LEQISWGVFDTLH-RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI  539 (606)
T ss_dssp             -----------------------CCEECTTTTTTCT-TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred             -----------------------CCccChhhhcccc-cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence                                   1222233333344 5555555555555555555555555555555555555 44444


Q ss_pred             cccCC-CCCeeecCCCcccccCC
Q 041562          592 LKRLH-FLSAFNVAENNLRGSIP  613 (653)
Q Consensus       592 l~~l~-~L~~L~ls~N~l~g~iP  613 (653)
                      +..++ +|++|++++|++.+..|
T Consensus       540 ~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          540 LQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             GGGSCTTCCEEECCSCCCCCSST
T ss_pred             HhhhcccCcEEEccCCCcccCCc
Confidence            55554 35555555555554443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.4e-53  Score=488.40  Aligned_cols=524  Identities=19%  Similarity=0.194  Sum_probs=405.9

Q ss_pred             ccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCC-CccccC-CCcCEEEccCCCCCCCCchH
Q 041562           63 CLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEF-PSSLSS-NYIKIIDLSSNHFQGKIPST  140 (653)
Q Consensus        63 c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~-~~L~~L~Ls~n~l~~~ip~~  140 (653)
                      |.|..|.+ -..+++.|+|++|.+++..+..|.++++|++|||++|.+.+.+ |..+.. ++|++|+|++|.+.+..|. 
T Consensus        14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-   91 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-   91 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-
T ss_pred             CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-
Confidence            56777777 5678999999999999999999999999999999999777666 667777 9999999999999955555 


Q ss_pred             HHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCC-ccCCCCCCCCEEEcccCCCCCCccccccCC
Q 041562          141 IFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP-LGLGSCSRLKTFRAGFNYLTGSLPDDIYTA  219 (653)
Q Consensus       141 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  219 (653)
                      .+..+++|++|+|++|.+++.++.......+++|++|++++|.+++..+ ..++++++|++|++++|.+++..+..+..+
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            4667999999999999999876665444589999999999999987655 579999999999999999998888888877


Q ss_pred             --CCCCEEeccCCcCcccccccccCCCC------CcEEEcccCcCCcccCccccCC---CCCCeEEeecC---------c
Q 041562          220 --TSLEQLSLSFNHISGSIKNGIVNLTS------LRILELYSNSLTGLIPRDIGKL---TNLESLVLHNN---------S  279 (653)
Q Consensus       220 --~~L~~L~Ls~n~i~~~~~~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n---------~  279 (653)
                        ++|+.|++++|.+.+..+..++.+.+      |++|++++|.+++..+..+...   .+++.+.++.+         .
T Consensus       172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~  251 (844)
T 3j0a_A          172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN  251 (844)
T ss_dssp             HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred             cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence              89999999999999888887777665      9999999999988777666543   56777776633         2


Q ss_pred             CcccCCccccCC--CCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccC
Q 041562          280 LSGSLPSSLKNC--INLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQI  357 (653)
Q Consensus       280 l~~~~p~~l~~l--~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  357 (653)
                      +.+..+..+..+  ++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus       252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  330 (844)
T 3j0a_A          252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS-RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY  330 (844)
T ss_dssp             STTGGGTTTTTTTTSCCCEEECTTCCCCEECS-CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred             cCCCChhhhhccccCCccEEECCCCcccccCh-hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence            222223334443  678888888888875444 46778888888888888888777778888888888888888888777


Q ss_pred             chhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccch
Q 041562          358 SPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVP  437 (653)
Q Consensus       358 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  437 (653)
                      +..+..+++|++|++++|.++.++.  ..+..+++|+.|++++|.+.+.          ..+++|+.|++++|+++ .+|
T Consensus       331 ~~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~Ls~N~l~~i----------~~~~~L~~L~l~~N~l~-~l~  397 (844)
T 3j0a_A          331 SSNFYGLPKVAYIDLQKNHIAIIQD--QTFKFLEKLQTLDLRDNALTTI----------HFIPSIPDIFLSGNKLV-TLP  397 (844)
T ss_dssp             SCSCSSCTTCCEEECCSCCCCCCCS--SCSCSCCCCCEEEEETCCSCCC----------SSCCSCSEEEEESCCCC-CCC
T ss_pred             HHHhcCCCCCCEEECCCCCCCccCh--hhhcCCCCCCEEECCCCCCCcc----------cCCCCcchhccCCCCcc-ccc
Confidence            7788888888888888888876654  2467778888888888877632          12577888888888887 445


Q ss_pred             hhhcCCccCCeeeCcCCcCccCC-chhhcCCCCCCEEEccCCcCcccCCc-cccCCCCCCcccccccccccccccccccC
Q 041562          438 SWIGKLKKLQVLDLSFNQLTGSV-PRFLGNMSSLFHIDFSNNLISGEFPK-EFCRLPALTPEQDKNKANESYLEFSLFKG  515 (653)
Q Consensus       438 ~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~  515 (653)
                      ..   ..+++.|++++|++.+.. +..+..+++|++|++++|++++..+. .+..+++|+.++++++.......      
T Consensus       398 ~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~------  468 (844)
T 3j0a_A          398 KI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE------  468 (844)
T ss_dssp             CC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC------
T ss_pred             cc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc------
Confidence            43   456788888888887542 23456788888888888888765443 34556777777765543221100      


Q ss_pred             CcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccC
Q 041562          516 SNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRL  595 (653)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l  595 (653)
                                          .+..+..+..++ .|+.|+|++|.+++..|..|..+++|++|||++|++++..|..+.  
T Consensus       469 --------------------~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--  525 (844)
T 3j0a_A          469 --------------------TELCWDVFEGLS-HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--  525 (844)
T ss_dssp             --------------------SCCCSSCSSCBC-CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--
T ss_pred             --------------------cccchhhhcCcc-cccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--
Confidence                                011222333444 899999999999999999999999999999999999976666655  


Q ss_pred             CCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCCCC
Q 041562          596 HFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAI  636 (653)
Q Consensus       596 ~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~  636 (653)
                      ++|++|++++|+++|.+|..  |..+....+.|||..|..+
T Consensus       526 ~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          526 ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE  564 (844)
T ss_dssp             SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred             ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence            89999999999999988854  6778888899999999543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.5e-52  Score=472.79  Aligned_cols=531  Identities=21%  Similarity=0.220  Sum_probs=424.8

Q ss_pred             CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562           74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN  152 (653)
Q Consensus        74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  152 (653)
                      .+++.|+|+++.+++..|..++++++|++|+|++|.+++..+..|+. ++|++|+|++|.++ .+|+..+..+++|++|+
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  127 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLD  127 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEE
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEE
Confidence            47899999999999888888999999999999999998666656766 89999999999998 56655567799999999


Q ss_pred             ccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCC--CCCCCCEEEcccCCCCCCccccccCC-----------
Q 041562          153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLG--SCSRLKTFRAGFNYLTGSLPDDIYTA-----------  219 (653)
Q Consensus       153 Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l-----------  219 (653)
                      +++|.+++..+..+.  .+++|++|++++|.+++..+..+.  .+++|++|++++|.+++..|..+..+           
T Consensus       128 Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~  205 (680)
T 1ziw_A          128 LSHNGLSSTKLGTQV--QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV  205 (680)
T ss_dssp             CCSSCCSCCCCCSSS--CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTC
T ss_pred             CCCCcccccCchhhc--ccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccc
Confidence            999999887765543  688999999999998876665543  56889999999999887777655433           


Q ss_pred             ----------------CCCCEEeccCCcCcccccccccCCCC--CcEEEcccCcCCcccCccccCCCCCCeEEeecCcCc
Q 041562          220 ----------------TSLEQLSLSFNHISGSIKNGIVNLTS--LRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLS  281 (653)
Q Consensus       220 ----------------~~L~~L~Ls~n~i~~~~~~~l~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  281 (653)
                                      ++|++|++++|.+.+..|..+..++.  |++|++++|++++..|..++.+++|++|++++|.+.
T Consensus       206 ~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  285 (680)
T 1ziw_A          206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ  285 (680)
T ss_dssp             CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS
T ss_pred             ccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccC
Confidence                            57888899999999888888888765  999999999999888889999999999999999999


Q ss_pred             ccCCccccCCCCCcEEEccCCcCccc--------cChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccc
Q 041562          282 GSLPSSLKNCINLTLLNLQSNFFEGD--------ISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL  353 (653)
Q Consensus       282 ~~~p~~l~~l~~L~~L~L~~n~l~~~--------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  353 (653)
                      +..|..+.++++|++|++++|...+.        +....+..+++|++|++++|.+++..+..+.++++|++|++++|.+
T Consensus       286 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~  365 (680)
T 1ziw_A          286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT  365 (680)
T ss_dssp             EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred             ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence            99999999999999999998765542        2223677899999999999999988888899999999999999975


Q ss_pred             ccc--CchhhcC--CCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccC
Q 041562          354 EGQ--ISPGIVA--LKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAE  429 (653)
Q Consensus       354 ~~~--~~~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~  429 (653)
                      ...  ....+..  .++|+.|++++|+++.+..  ..+..+++|+.|++++|.+.+.++..    .+.++++|++|++++
T Consensus       366 ~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~~l~~L~~L~Ls~  439 (680)
T 1ziw_A          366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIES--DAFSWLGHLEVLDLGLNEIGQELTGQ----EWRGLENIFEIYLSY  439 (680)
T ss_dssp             CCCEECTTTTGGGTTSCCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCEEECCSG----GGTTCTTCCEEECCS
T ss_pred             hhhhcchhhhcccccCcCceEECCCCCCCeECh--hhhhCCCCCCEEeCCCCcCccccCcc----cccCcccccEEecCC
Confidence            432  2222332  3689999999999886543  45778899999999999998776642    235788999999999


Q ss_pred             CcCcccchhhhcCCccCCeeeCcCCcCc--cCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccc
Q 041562          430 CKLKGQVPSWIGKLKKLQVLDLSFNQLT--GSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESY  507 (653)
Q Consensus       430 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  507 (653)
                      |++.+..+..+..+++|+.|++++|.+.  +.+|..+..+++|++|++++|++++..+..|..+++|+.++++++.....
T Consensus       440 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~  519 (680)
T 1ziw_A          440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL  519 (680)
T ss_dssp             CSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred             CCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence            9998888888999999999999999886  56788899999999999999999988888899999999999887654332


Q ss_pred             cccccccCCcccccccccccccccccceeeeCCh-HHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeee
Q 041562          508 LEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASA-AVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSG  586 (653)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~-~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~  586 (653)
                      ..................+..+....+--..+|. .++.++ .|+.|+|++|++++..+..|..+++|++|+|++|++++
T Consensus       520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  598 (680)
T 1ziw_A          520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF-ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS  598 (680)
T ss_dssp             GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred             chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc-CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence            1100000000000111112222222221224554 467788 99999999999998777888999999999999999998


Q ss_pred             ecCcccc-cCCCCCeeecCCCcccccCCC
Q 041562          587 EIPVSLK-RLHFLSAFNVAENNLRGSIPS  614 (653)
Q Consensus       587 ~ip~~l~-~l~~L~~L~ls~N~l~g~iP~  614 (653)
                      ..|..+. .+++|+++++++|++.+.-+.
T Consensus       599 ~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          599 VEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             cChhHhcccccccCEEEccCCCcccCCcc
Confidence            8777777 789999999999999987764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.4e-51  Score=459.69  Aligned_cols=473  Identities=19%  Similarity=0.196  Sum_probs=408.8

Q ss_pred             CCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEE
Q 041562           73 NGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITF  151 (653)
Q Consensus        73 ~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L  151 (653)
                      -.+++.|+|+++.+++..|.+|+++++|++|+|++|.+++..|..++. ++|++|++++|.++ .++...+..+++|++|
T Consensus        56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L  134 (606)
T 3t6q_A           56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESL  134 (606)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEE
T ss_pred             CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCcchhccCCcccEE
Confidence            357999999999999999999999999999999999999988988887 99999999999999 4544446779999999


Q ss_pred             EccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCC--EEEcccCCCCCCccccccCCCCCCEEeccC
Q 041562          152 NVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLK--TFRAGFNYLTGSLPDDIYTATSLEQLSLSF  229 (653)
Q Consensus       152 ~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  229 (653)
                      ++++|.+++.....+.  .+++|++|++++|.+++..+..++.+++|+  .|++++|.+++..|..+ ....|++|++++
T Consensus       135 ~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~  211 (606)
T 3t6q_A          135 YLGSNHISSIKLPKGF--PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGG  211 (606)
T ss_dssp             ECCSSCCCCCCCCTTC--CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT-TTCEEEEEECTT
T ss_pred             ECCCCcccccCccccc--CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh-hhccccccccCC
Confidence            9999999985433332  489999999999999988888899999999  99999999997666554 456899999988


Q ss_pred             CcCcc--------------------------cccccccCCC--CCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCc
Q 041562          230 NHISG--------------------------SIKNGIVNLT--SLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLS  281 (653)
Q Consensus       230 n~i~~--------------------------~~~~~l~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  281 (653)
                      |....                          ..+..+..+.  +|++|++++|.+++..+..|+.+++|++|++++|.++
T Consensus       212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  291 (606)
T 3t6q_A          212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS  291 (606)
T ss_dssp             CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred             chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence            75110                          1111222222  7899999999999888888999999999999999998


Q ss_pred             ccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCc-cCcCCCCCCeEEccCccccccC--c
Q 041562          282 GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPI-TLNSCKSLTAVNLARNQLEGQI--S  358 (653)
Q Consensus       282 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~--~  358 (653)
                       .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+..  +
T Consensus       292 -~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  369 (606)
T 3t6q_A          292 -ELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN  369 (606)
T ss_dssp             -CCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred             -CCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence             788899999999999999999985544 4788999999999999999876665 4889999999999999998765  7


Q ss_pred             hhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchh
Q 041562          359 PGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPS  438 (653)
Q Consensus       359 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~  438 (653)
                      ..+..+++|++|++++|.++.+..  ..+..+++|+.|++++|.+.+..+..    .+..+++|++|++++|.+++..|.
T Consensus       370 ~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~  443 (606)
T 3t6q_A          370 LQLRNLSHLQSLNLSYNEPLSLKT--EAFKECPQLELLDLAFTRLKVKDAQS----PFQNLHLLKVLNLSHSLLDISSEQ  443 (606)
T ss_dssp             TTTTTCTTCCEEECCSCSCEEECT--TTTTTCTTCSEEECTTCCEECCTTCC----TTTTCTTCCEEECTTCCCBTTCTT
T ss_pred             hhcccCCCCCEEECCCCcCCcCCH--HHhcCCccCCeEECCCCcCCCcccch----hhhCcccCCEEECCCCccCCcCHH
Confidence            789999999999999999875532  45778999999999999988766543    235789999999999999988899


Q ss_pred             hhcCCccCCeeeCcCCcCccC---CchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccC
Q 041562          439 WIGKLKKLQVLDLSFNQLTGS---VPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKG  515 (653)
Q Consensus       439 ~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~  515 (653)
                      .+..+++|++|++++|++.+.   .+..+..+++|++|++++|++++..|..|..++                       
T Consensus       444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----------------------  500 (606)
T 3t6q_A          444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK-----------------------  500 (606)
T ss_dssp             TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT-----------------------
T ss_pred             HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc-----------------------
Confidence            999999999999999999873   336789999999999999999988887776654                       


Q ss_pred             CcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccC
Q 041562          516 SNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRL  595 (653)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l  595 (653)
                                                       .|++|+|++|++++.+|..+.+++.| +||+++|++++.+|..+..+
T Consensus       501 ---------------------------------~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l  546 (606)
T 3t6q_A          501 ---------------------------------MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL  546 (606)
T ss_dssp             ---------------------------------TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHH
T ss_pred             ---------------------------------CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccC
Confidence                                             68899999999999999999999999 99999999999888889999


Q ss_pred             CCCCeeecCCCcccccCCC
Q 041562          596 HFLSAFNVAENNLRGSIPS  614 (653)
Q Consensus       596 ~~L~~L~ls~N~l~g~iP~  614 (653)
                      ++|+++++++|++.+..+.
T Consensus       547 ~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          547 SQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             HTSSEEECTTCCEECSGGG
T ss_pred             CCCCEEeCCCCCccccCCc
Confidence            9999999999999987663

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.9e-50  Score=452.33  Aligned_cols=464  Identities=19%  Similarity=0.170  Sum_probs=399.2

Q ss_pred             CCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEE
Q 041562           73 NGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITF  151 (653)
Q Consensus        73 ~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L  151 (653)
                      -.++++|+++++.+++..+.+|+++++|++|+|++|.+++..|..++. ++|++|++++|.++ .++...+..+++|++|
T Consensus        55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  133 (606)
T 3vq2_A           55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKL  133 (606)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEE
T ss_pred             CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEE
Confidence            357999999999999998999999999999999999999988998887 99999999999998 4554446779999999


Q ss_pred             EccCCcCcc-cCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCC----EEEcccCCCCCCccccccCCCCCCEEe
Q 041562          152 NVSNNSFTG-LISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLK----TFRAGFNYLTGSLPDDIYTATSLEQLS  226 (653)
Q Consensus       152 ~Ls~n~l~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~  226 (653)
                      ++++|.+++ .+|..+.  ++++|++|++++|.+++..+..++.+++|+    +|++++|.+++..+ ......+|++|+
T Consensus       134 ~L~~n~l~~~~lp~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~  210 (606)
T 3vq2_A          134 NVAHNFIHSCKLPAYFS--NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD-QAFQGIKLHELT  210 (606)
T ss_dssp             ECCSSCCCCCCCCGGGG--TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECT-TTTTTCEEEEEE
T ss_pred             eCCCCcccceechHhHh--hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCc-ccccCceeeeee
Confidence            999999987 4566554  799999999999999998888888777665    89999999995444 444455999999


Q ss_pred             ccCCcCc-ccccccccCCCCCcEEEc---------------------------------ccCcCCcccCccccCCCCCCe
Q 041562          227 LSFNHIS-GSIKNGIVNLTSLRILEL---------------------------------YSNSLTGLIPRDIGKLTNLES  272 (653)
Q Consensus       227 Ls~n~i~-~~~~~~l~~l~~L~~L~L---------------------------------~~n~l~~~~p~~l~~l~~L~~  272 (653)
                      +++|.+. +..|..+.++++|+.+++                                 ..+.+.+.+|. +..+++|+.
T Consensus       211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~  289 (606)
T 3vq2_A          211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSA  289 (606)
T ss_dssp             EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSE
T ss_pred             ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCE
Confidence            9999986 456777888888887776                                 55666777766 888999999


Q ss_pred             EEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcc
Q 041562          273 LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQ  352 (653)
Q Consensus       273 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  352 (653)
                      |++++|.+. .+| .+..+++|++|++++|.+ +.+|  .+ .+++|++|++++|...+.+  .+..+++|++|++++|.
T Consensus       290 L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp--~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  361 (606)
T 3vq2_A          290 MSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP--TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA  361 (606)
T ss_dssp             EEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC--CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC
T ss_pred             EEecCccch-hhh-hccccccCCEEEcccccC-cccc--cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCc
Confidence            999999997 566 799999999999999999 5888  45 8999999999999665544  57789999999999999


Q ss_pred             cccc--CchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCC
Q 041562          353 LEGQ--ISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAEC  430 (653)
Q Consensus       353 l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n  430 (653)
                      +++.  .+..+..+++|++|++++|.++.++   ..+..+++|+.|++++|.+.+..+..    .+..+++|++|++++|
T Consensus       362 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          362 LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQHSTLKRVTEFS----AFLSLEKLLYLDISYT  434 (606)
T ss_dssp             EEEEEECCHHHHCCSCCCEEECCSCSEEEEC---CCCTTCTTCCEEECTTSEEESTTTTT----TTTTCTTCCEEECTTS
T ss_pred             cCCCcchhhhhccCCcccEeECCCCccccch---hhccCCCCCCeeECCCCccCCccChh----hhhccccCCEEECcCC
Confidence            9876  4788999999999999999988766   45778999999999999998776521    2357899999999999


Q ss_pred             cCcccchhhhcCCccCCeeeCcCCcCcc-CCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccc
Q 041562          431 KLKGQVPSWIGKLKKLQVLDLSFNQLTG-SVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLE  509 (653)
Q Consensus       431 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~  509 (653)
                      .+++..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++++..|..+..+++|+.++++++.      
T Consensus       435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~------  508 (606)
T 3vq2_A          435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN------  508 (606)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC------
T ss_pred             CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc------
Confidence            9999899999999999999999999998 478889999999999999999999999999999999999887642      


Q ss_pred             cccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCC-CCCeEeCCCCeeeeec
Q 041562          510 FSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLT-NLERMDLSKNHLSGEI  588 (653)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~LdLs~N~l~~~i  588 (653)
                                               +.+.+|..++.++ +|++|+|++|+++ .+|..+..++ +|++|++++|++.+..
T Consensus       509 -------------------------l~~~~~~~~~~l~-~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          509 -------------------------LLFLDSSHYNQLY-SLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             -------------------------CSCEEGGGTTTCT-TCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred             -------------------------CCCcCHHHccCCC-cCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence                                     3344566667777 9999999999999 6888899997 6999999999998755


Q ss_pred             C
Q 041562          589 P  589 (653)
Q Consensus       589 p  589 (653)
                      +
T Consensus       562 ~  562 (606)
T 3vq2_A          562 E  562 (606)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-49  Score=442.10  Aligned_cols=513  Identities=18%  Similarity=0.175  Sum_probs=325.0

Q ss_pred             CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562           74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN  152 (653)
Q Consensus        74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  152 (653)
                      .+++.|+++++.+++..+.+|..+++|++|+|++|.+++..+..|.. ++|++|+|++|.++ .+|...+..+++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccccc
Confidence            46888888888888887788888888888888888888777777776 88888888888887 45555566788888888


Q ss_pred             ccCCcCcccCChhhhhcCCCCCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCccccccCCCCC----CEEec
Q 041562          153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSL----EQLSL  227 (653)
Q Consensus       153 Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~L  227 (653)
                      +++|.+++..+..+  ..+++|++|++++|.+++ .+|..++++++|++|++++|.+++..|..+..+++|    ++|++
T Consensus       107 L~~n~l~~l~~~~~--~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          107 AVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             CTTSCCCCSTTCSC--TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             ccccccccCCCccc--cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence            88888887655443  268888888888888876 468888888888888888888887767777777777    78888


Q ss_pred             cCCcCcccccccccCCCCCcEEEcccCcCCc-ccCccccCCCCCCeEEeecCcCc------ccCCccccCCC--CCcEEE
Q 041562          228 SFNHISGSIKNGIVNLTSLRILELYSNSLTG-LIPRDIGKLTNLESLVLHNNSLS------GSLPSSLKNCI--NLTLLN  298 (653)
Q Consensus       228 s~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~------~~~p~~l~~l~--~L~~L~  298 (653)
                      ++|.+.+..+..+... +|++|++++|.... .++..+..+++++.+.+....+.      ......+..++  .++.++
T Consensus       185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            8888887666666655 78888888774331 22333444444444433321111      00111111111  133444


Q ss_pred             ccCC-cCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCC
Q 041562          299 LQSN-FFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSL  377 (653)
Q Consensus       299 L~~n-~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  377 (653)
                      ++++ .+.+.++. .+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|.  ..+++|++|++++|.+
T Consensus       264 l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~  337 (570)
T 2z63_A          264 LAYLDYYLDDIID-LFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKG  337 (570)
T ss_dssp             EEETTEEESCSTT-TTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBS
T ss_pred             hhcchhhhhhchh-hhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcc
Confidence            4444 33333332 4445555555555555555 345555555 5555555555554 3332  3445555555555554


Q ss_pred             CCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCc
Q 041562          378 TNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLT  457 (653)
Q Consensus       378 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  457 (653)
                      .....    ...+++|+.|++++|.+.+....   ...+..+++|++|++++|.+.+..+. +..+++|++|++++|++.
T Consensus       338 ~~~~~----~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~  409 (570)
T 2z63_A          338 GNAFS----EVDLPSLEFLDLSRNGLSFKGCC---SQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLK  409 (570)
T ss_dssp             CCBCC----CCBCTTCCEEECCSSCCBEEEEE---EHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEE
T ss_pred             ccccc----cccCCCCCEEeCcCCccCccccc---cccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccc
Confidence            42221    13455555555555555432100   00112445566666666655533222 555666666666666655


Q ss_pred             cCCc-hhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCccccccccccccccccccee
Q 041562          458 GSVP-RFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWK  536 (653)
Q Consensus       458 ~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  536 (653)
                      +..+ ..+..+++|++|++++|++++..|..+..+++|+.+++.++...                              .
T Consensus       410 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------------~  459 (570)
T 2z63_A          410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ------------------------------E  459 (570)
T ss_dssp             SCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG------------------------------G
T ss_pred             cccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCc------------------------------c
Confidence            4443 34555566666666666665555555555555555555432110                              0


Q ss_pred             eeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCC
Q 041562          537 TTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGG  616 (653)
Q Consensus       537 g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~  616 (653)
                      +.+|..++.++ .|++|+|++|++++..|..|+.+++|++|++++|++++..|..+..+++|++|++++|+++|.+|...
T Consensus       460 ~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          460 NFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             GEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             ccchhhhhccc-CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            22333344444 89999999999999889999999999999999999998888889999999999999999999998754


Q ss_pred             CCCCc---CCCccCCCCCCCCCC
Q 041562          617 QFDTF---PSSSFRGNPDLCGAI  636 (653)
Q Consensus       617 ~~~~~---~~~~~~gn~~lc~~~  636 (653)
                      .+..+   ....+.+.+ .|..|
T Consensus       539 ~~~~wl~~~~~~~~~~~-~C~~~  560 (570)
T 2z63_A          539 YLSRWLNKNSQKEQGSA-KCSGS  560 (570)
T ss_dssp             HHHHHHHHTGGGEESCC-BBTTT
T ss_pred             HHHHHHHhccccCCCch-hhCCC
Confidence            33111   223455665 77654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.3e-48  Score=432.25  Aligned_cols=491  Identities=20%  Similarity=0.217  Sum_probs=295.8

Q ss_pred             CccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchH
Q 041562           62 CCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPST  140 (653)
Q Consensus        62 ~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~  140 (653)
                      .|.|.|| |+.         ++++++ .+|+.+.  ++|++|+|++|.+++..|..+.. ++|++|+|++|++++ +++.
T Consensus         3 ~C~~~~~-c~~---------~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~   68 (549)
T 2z81_A            3 SCDASGV-CDG---------RSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGD   68 (549)
T ss_dssp             EECTTSE-EEC---------TTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTT
T ss_pred             cCCCCce-EEC---------CCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChh
Confidence            4899998 863         223333 3444332  56666666666666555555555 666666666666663 3333


Q ss_pred             HHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCcc-ccccC
Q 041562          141 IFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLP-DDIYT  218 (653)
Q Consensus       141 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~  218 (653)
                      .+..+++|++|++++|.+++..+..+.  .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.+
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~  146 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFG--PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG  146 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHT--TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             hccccccCCEEECCCCccCccCHHHhc--cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence            344566666666666666665554332  56666666666666664 345566666666666666666433443 45666


Q ss_pred             CCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccC--C-ccccCCCCCc
Q 041562          219 ATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSL--P-SSLKNCINLT  295 (653)
Q Consensus       219 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p-~~l~~l~~L~  295 (653)
                      +++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|++++..  | .....+++|+
T Consensus       147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~  226 (549)
T 2z81_A          147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK  226 (549)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred             ccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhccc
Confidence            666666666666666666666666666666666666655322222345666666666666666431  1 1123456666


Q ss_pred             EEEccCCcCccccCh---hhccCCCCcCEEEccCCcccccC------CccCcCCCCCCeEEccCcccccc-----Cchhh
Q 041562          296 LLNLQSNFFEGDISV---FNFSTLLKLRVLDLGSNLFTGSL------PITLNSCKSLTAVNLARNQLEGQ-----ISPGI  361 (653)
Q Consensus       296 ~L~L~~n~l~~~i~~---~~~~~l~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~L~~n~l~~~-----~~~~l  361 (653)
                      .|++++|.+++..+.   ..+..+++|+.+++++|.+.+..      ...+..+++|+.+++.++.+...     ++..+
T Consensus       227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~  306 (549)
T 2z81_A          227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY  306 (549)
T ss_dssp             EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred             ceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhh
Confidence            666666666543221   12344566666666666655421      12234556666777666655421     11222


Q ss_pred             cCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccch--hh
Q 041562          362 VALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVP--SW  439 (653)
Q Consensus       362 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p--~~  439 (653)
                      ...++|++|++++|.++.++..+  +..+++|++|++++|.+.+.+|..  ...+..+++|++|++++|++++..+  ..
T Consensus       307 ~~~~~L~~L~l~~n~l~~ip~~~--~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  382 (549)
T 2z81_A          307 SLLEKVKRITVENSKVFLVPCSF--SQHLKSLEFLDLSENLMVEEYLKN--SACKGAWPSLQTLVLSQNHLRSMQKTGEI  382 (549)
T ss_dssp             HHSTTCCEEEEESSCCCCCCHHH--HHHCTTCCEEECCSSCCCHHHHHH--HTCTTSSTTCCEEECTTSCCCCHHHHHHH
T ss_pred             hhcccceEEEeccCccccCCHHH--HhcCccccEEEccCCccccccccc--hhhhhccccCcEEEccCCcccccccchhh
Confidence            33456777777777776555322  235667777777777766544321  0112356777777777777764322  44


Q ss_pred             hcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCccc
Q 041562          440 IGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNF  519 (653)
Q Consensus       440 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~  519 (653)
                      +..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+.  +.|+.++++++....             
T Consensus       383 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~--~~L~~L~Ls~N~l~~-------------  445 (549)
T 2z81_A          383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDS-------------  445 (549)
T ss_dssp             GGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSC--TTCSEEECCSSCCSC-------------
T ss_pred             hhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhc--CCceEEECCCCChhh-------------
Confidence            667777777777777777 566667777777777777777762 333221  344544444321110             


Q ss_pred             ccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCC
Q 041562          520 IGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLS  599 (653)
Q Consensus       520 ~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~  599 (653)
                               +.             +.++ .|++|+|++|+++ .+|. ...+++|++|||++|++++.+|..+..+++|+
T Consensus       446 ---------~~-------------~~l~-~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  500 (549)
T 2z81_A          446 ---------FS-------------LFLP-RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ  500 (549)
T ss_dssp             ---------CC-------------CCCT-TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred             ---------hc-------------ccCC-hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence                     00             1122 7888888888888 5665 46788888889988888888787788888888


Q ss_pred             eeecCCCcccccCCC
Q 041562          600 AFNVAENNLRGSIPS  614 (653)
Q Consensus       600 ~L~ls~N~l~g~iP~  614 (653)
                      +|++++|++.|..|.
T Consensus       501 ~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          501 KIWLHTNPWDCSCPR  515 (549)
T ss_dssp             EEECCSSCBCCCHHH
T ss_pred             EEEecCCCccCCCcc
Confidence            888888888888774

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.5e-48  Score=428.24  Aligned_cols=442  Identities=20%  Similarity=0.205  Sum_probs=354.4

Q ss_pred             CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562           74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN  152 (653)
Q Consensus        74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  152 (653)
                      .+++.|+|+++.+++..+..|+++++|++|+|++|.+++..|..+.. ++|++|++++|.++ .+|...+..+++|++|+
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  130 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELN  130 (570)
T ss_dssp             SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEE
T ss_pred             CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEe
Confidence            57999999999999988889999999999999999999888888877 99999999999998 56654467899999999


Q ss_pred             ccCCcCccc-CChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCC----CEEEcccCCCCCCccccccCCCCCCEEec
Q 041562          153 VSNNSFTGL-ISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRL----KTFRAGFNYLTGSLPDDIYTATSLEQLSL  227 (653)
Q Consensus       153 Ls~n~l~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  227 (653)
                      +++|.+++. +|..+.  ++++|++|++++|.+++..+..++.+++|    +.+++++|.+++..|..+... +|++|++
T Consensus       131 L~~n~l~~~~lp~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l  207 (570)
T 2z63_A          131 VAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTL  207 (570)
T ss_dssp             CCSSCCCCCCCCGGGG--GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEE
T ss_pred             cCCCccceecChhhhc--ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEec
Confidence            999999884 566554  69999999999999998888888888888    899999999998777766655 8999999


Q ss_pred             cCCcCcc-cccccccCCCCC--------------------------------cEEEcccC-cCCcccCccccCCCCCCeE
Q 041562          228 SFNHISG-SIKNGIVNLTSL--------------------------------RILELYSN-SLTGLIPRDIGKLTNLESL  273 (653)
Q Consensus       228 s~n~i~~-~~~~~l~~l~~L--------------------------------~~L~L~~n-~l~~~~p~~l~~l~~L~~L  273 (653)
                      ++|.... .++..+..++.+                                +.++++++ .+.+..|..+..+++|++|
T Consensus       208 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L  287 (570)
T 2z63_A          208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF  287 (570)
T ss_dssp             ESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEE
T ss_pred             ccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEE
Confidence            9885331 223333333333                                44555555 5566677778888888888


Q ss_pred             EeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccc
Q 041562          274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL  353 (653)
Q Consensus       274 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  353 (653)
                      ++++|.+. .+|..+..+ +|++|++++|.+. .+|.   ..+++|+.|++++|.+.+..+.  ..+++|++|++++|.+
T Consensus       288 ~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l  359 (570)
T 2z63_A          288 SLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGL  359 (570)
T ss_dssp             EEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCC
T ss_pred             EecCccch-hhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCcc
Confidence            88888887 577777777 8888888888887 5553   4677888888888887765554  6678888888888888


Q ss_pred             cccC--chhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCc
Q 041562          354 EGQI--SPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECK  431 (653)
Q Consensus       354 ~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~  431 (653)
                      ++..  +..+..+++|++|++++|.++.++..   +..+++|+.|++++|.+.+..+..    .+..+++|++|++++|.
T Consensus       360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~  432 (570)
T 2z63_A          360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIYLDISHTH  432 (570)
T ss_dssp             BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTTSEEESCTTSC----TTTTCTTCCEEECTTSC
T ss_pred             CccccccccccccCccCEEECCCCcccccccc---ccccCCCCEEEccCCccccccchh----hhhcCCCCCEEeCcCCc
Confidence            7554  66778888888888888887765432   667888888888888777654421    23467888888888888


Q ss_pred             CcccchhhhcCCccCCeeeCcCCcCc-cCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccccccccccccc
Q 041562          432 LKGQVPSWIGKLKKLQVLDLSFNQLT-GSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEF  510 (653)
Q Consensus       432 l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~  510 (653)
                      +.+..|..+..+++|++|++++|++. +.+|..+..+++|++|++++|++++..|..+..++                  
T Consensus       433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------------  494 (570)
T 2z63_A          433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------------------  494 (570)
T ss_dssp             CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT------------------
T ss_pred             ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc------------------
Confidence            88777888888888888888888887 56777788888888888888888877676665544                  


Q ss_pred             ccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCc
Q 041562          511 SLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPV  590 (653)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~  590 (653)
                                                            +|++|+|++|++++..|..|+++++|++|++++|++++..|.
T Consensus       495 --------------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          495 --------------------------------------SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             --------------------------------------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             --------------------------------------CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence                                                  788999999999998888999999999999999999988774

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-47  Score=444.14  Aligned_cols=500  Identities=20%  Similarity=0.167  Sum_probs=409.3

Q ss_pred             EEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCC
Q 041562           78 HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNN  156 (653)
Q Consensus        78 ~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n  156 (653)
                      ..+.++++++. +|.   -.++|++|||++|.+++..|..+.. ++|++|+|++|...+.+++..+..+++|++|+|++|
T Consensus         8 ~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            8 IAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             EEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            34556677764 444   4589999999999999988888888 999999999998888887777889999999999999


Q ss_pred             cCcccCChhhhhcCCCCCCEEEccCCcCccCCCcc--CCCCCCCCEEEcccCCCCCCcc-ccccCCCCCCEEeccCCcCc
Q 041562          157 SFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLG--LGSCSRLKTFRAGFNYLTGSLP-DDIYTATSLEQLSLSFNHIS  233 (653)
Q Consensus       157 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~i~  233 (653)
                      .+++..|..+.  .+++|++|++++|.+++.++..  +.++++|++|++++|.+++..+ ..+.++++|++|++++|.+.
T Consensus        84 ~l~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           84 KIYFLHPDAFQ--GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             CCCEECTTSSC--SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             cCcccCHhHcc--CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            99998877654  7999999999999999866665  9999999999999999987655 57999999999999999999


Q ss_pred             ccccccccCC--CCCcEEEcccCcCCcccCccccCCCC------CCeEEeecCcCcccCCccccCC---CCCcEEEccCC
Q 041562          234 GSIKNGIVNL--TSLRILELYSNSLTGLIPRDIGKLTN------LESLVLHNNSLSGSLPSSLKNC---INLTLLNLQSN  302 (653)
Q Consensus       234 ~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n  302 (653)
                      +..+..+..+  ++|+.|++++|.+.+..|..++.+++      |++|++++|.+++..+..+...   .+++.|.+..+
T Consensus       162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred             eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence            8888888887  89999999999999988887777665      9999999999988888776543   67888888744


Q ss_pred             cCcc--------ccChhhccCC--CCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEEC
Q 041562          303 FFEG--------DISVFNFSTL--LKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSL  372 (653)
Q Consensus       303 ~l~~--------~i~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  372 (653)
                      ....        .+....+..+  ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus       242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  321 (844)
T 3j0a_A          242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL  321 (844)
T ss_dssp             CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred             cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence            3221        1122234443  78999999999999888999999999999999999999998999999999999999


Q ss_pred             CCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCc
Q 041562          373 SNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLS  452 (653)
Q Consensus       373 s~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  452 (653)
                      ++|.++.+..  ..+..+++|+.|++++|.+.+..+..     +..+++|++|++++|.+++ ++    .+++|+.|+++
T Consensus       322 s~N~l~~~~~--~~~~~l~~L~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~  389 (844)
T 3j0a_A          322 SYNLLGELYS--SNFYGLPKVAYIDLQKNHIAIIQDQT-----FKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLS  389 (844)
T ss_dssp             ESCCCSCCCS--CSCSSCTTCCEEECCSCCCCCCCSSC-----SCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEE
T ss_pred             CCCCCCccCH--HHhcCCCCCCEEECCCCCCCccChhh-----hcCCCCCCEEECCCCCCCc-cc----CCCCcchhccC
Confidence            9999986643  45788999999999999987665542     3578999999999999984 33    38899999999


Q ss_pred             CCcCccCCchhhcCCCCCCEEEccCCcCcccCC-ccccCCCCCCcccccccccccccccccccCCccccccccccccccc
Q 041562          453 FNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFP-KEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHE  531 (653)
Q Consensus       453 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (653)
                      +|++. .+|..   ..+++.|++++|++++... ..+..+++|+.++++++.........                    
T Consensus       390 ~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------------------  445 (844)
T 3j0a_A          390 GNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ--------------------  445 (844)
T ss_dssp             SCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS--------------------
T ss_pred             CCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc--------------------
Confidence            99998 55543   5689999999999986532 34568899998888765332111000                    


Q ss_pred             ccceeeeCChHHHhHHhccCeeecCCccCc-----cccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCC
Q 041562          532 QYTWKTTASAAVSLLRLLLHMLDLSHNNFS-----GNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAEN  606 (653)
Q Consensus       532 ~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  606 (653)
                                ....++ +|+.|+|++|.++     +..|..|..+++|++|||++|++++..|..+..+++|++|++++|
T Consensus       446 ----------~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  514 (844)
T 3j0a_A          446 ----------TPSENP-SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN  514 (844)
T ss_dssp             ----------SSCSCT-TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred             ----------ccccCC-ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC
Confidence                      001123 8999999999997     455677899999999999999999998998999999999999999


Q ss_pred             cccccCCCCCCCCCcCCCccCCCCC
Q 041562          607 NLRGSIPSGGQFDTFPSSSFRGNPD  631 (653)
Q Consensus       607 ~l~g~iP~~~~~~~~~~~~~~gn~~  631 (653)
                      ++++..|.. ....+....+.+|..
T Consensus       515 ~l~~l~~~~-~~~~L~~L~Ls~N~l  538 (844)
T 3j0a_A          515 RLTVLSHND-LPANLEILDISRNQL  538 (844)
T ss_dssp             CCSSCCCCC-CCSCCCEEEEEEECC
T ss_pred             CCCccChhh-hhccccEEECCCCcC
Confidence            999654443 235566666666643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.8e-47  Score=418.56  Aligned_cols=453  Identities=20%  Similarity=0.251  Sum_probs=354.8

Q ss_pred             EEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccC
Q 041562           77 SHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN  155 (653)
Q Consensus        77 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~  155 (653)
                      +.+|+++++++ .+|..+.  ++|++|+|++|.+++..|..+.. ++|++|+|++|++++..| ..+..+++|++|++++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCC
Confidence            36888899888 5777666  89999999999998877777776 889999999999884434 4456788999999999


Q ss_pred             CcCcccCChhhhhcCCCCCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCccccccCCCCC--CEEeccCCcC
Q 041562          156 NSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSL--EQLSLSFNHI  232 (653)
Q Consensus       156 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~Ls~n~i  232 (653)
                      |.+++..+.     .+++|++|++++|.+++ .+|..++++++|++|++++|.+++   ..+..+++|  ++|++++|.+
T Consensus        79 N~l~~lp~~-----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           79 NKLVKISCH-----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             SCCCEEECC-----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             CceeecCcc-----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence            988854332     58889999999999887 577888999999999999998876   356667777  9999999988


Q ss_pred             --cccccccccCCC-CCcEEEcccCcCCcccCc-cccCCCCCCeEEeecCc-------CcccCCccccCCCCCcEEEccC
Q 041562          233 --SGSIKNGIVNLT-SLRILELYSNSLTGLIPR-DIGKLTNLESLVLHNNS-------LSGSLPSSLKNCINLTLLNLQS  301 (653)
Q Consensus       233 --~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-------l~~~~p~~l~~l~~L~~L~L~~  301 (653)
                        .+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|.       +.+.+| .+..+++|+.|++++
T Consensus       151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~  229 (520)
T 2z7x_B          151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN  229 (520)
T ss_dssp             TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred             cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence              777777777665 344567778887765554 56778889999999887       666665 688889999999988


Q ss_pred             CcCccccChhh--ccCCCCcCEEEccCCcccccCCccC-----cCCCCCCeEEccCccccccCc-hhhcCC---CCCCEE
Q 041562          302 NFFEGDISVFN--FSTLLKLRVLDLGSNLFTGSLPITL-----NSCKSLTAVNLARNQLEGQIS-PGIVAL---KSLSFL  370 (653)
Q Consensus       302 n~l~~~i~~~~--~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L  370 (653)
                      |.+.+......  ....++|++|++++|.++|.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|
T Consensus       230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L  307 (520)
T 2z7x_B          230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF  307 (520)
T ss_dssp             EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred             cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence            88765322111  1124588999999999988888888     8888899999998888  445 444444   678999


Q ss_pred             ECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcc--cchhhhcCCccCCe
Q 041562          371 SLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG--QVPSWIGKLKKLQV  448 (653)
Q Consensus       371 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~  448 (653)
                      ++++|.+..++    ....+++|++|++++|.+.+.+|...     ..+++|++|++++|++++  .+|..+..+++|++
T Consensus       308 ~l~~n~l~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~  378 (520)
T 2z7x_B          308 TVSGTRMVHML----CPSKISPFLHLDFSNNLLTDTVFENC-----GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ  378 (520)
T ss_dssp             EEESSCCCCCC----CCSSCCCCCEEECCSSCCCTTTTTTC-----CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred             EcCCCcccccc----chhhCCcccEEEeECCccChhhhhhh-----ccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence            99998876543    12577888888888888887666533     467888888888888886  55677888888888


Q ss_pred             eeCcCCcCccCCch-hhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCccccccccccc
Q 041562          449 LDLSFNQLTGSVPR-FLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKIL  527 (653)
Q Consensus       449 L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (653)
                      |++++|++.+.+|. .+..+++|++|++++|++++.+|..+.                                      
T Consensus       379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--------------------------------------  420 (520)
T 2z7x_B          379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--------------------------------------  420 (520)
T ss_dssp             EECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--------------------------------------
T ss_pred             EECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--------------------------------------
Confidence            88888888875664 377788888888888888766554332                                      


Q ss_pred             ccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcc-cccCCCCCeeecCCC
Q 041562          528 TFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVS-LKRLHFLSAFNVAEN  606 (653)
Q Consensus       528 ~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N  606 (653)
                                         + .|+.|+|++|+++ .+|..+..+++|++|||++|+++ .+|.. +..+++|++|++++|
T Consensus       421 -------------------~-~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          421 -------------------P-RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             -------------------T-TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             -------------------c-cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCC
Confidence                               1 7899999999999 78888889999999999999999 56765 889999999999999


Q ss_pred             cccccCC
Q 041562          607 NLRGSIP  613 (653)
Q Consensus       607 ~l~g~iP  613 (653)
                      ++++..+
T Consensus       479 ~~~c~c~  485 (520)
T 2z7x_B          479 PWDCSCP  485 (520)
T ss_dssp             CBCCCHH
T ss_pred             CCcccCC
Confidence            9998665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.9e-48  Score=436.40  Aligned_cols=461  Identities=19%  Similarity=0.223  Sum_probs=339.2

Q ss_pred             CCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCC------CC------CCchHHHhcCCCCcEEEccCCcCcccCCh
Q 041562           98 THLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHF------QG------KIPSTIFRLTQNLITFNVSNNSFTGLISW  164 (653)
Q Consensus        98 ~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l------~~------~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~  164 (653)
                      .+++.|+|+++.+.|.+|+.++. ++|++|+|++|.+      .|      .+|...   +..|+ +++++|.+.+.++.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence            57889999999999999998888 9999999999976      33      566655   34566 78888877777665


Q ss_pred             hhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEc--ccCCCCCCccccccCCCCCCEEeccCCcCccc-------
Q 041562          165 SAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRA--GFNYLTGSLPDDIYTATSLEQLSLSFNHISGS-------  235 (653)
Q Consensus       165 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~-------  235 (653)
                      .+.. .+..+..+++....+..      .....++.+.+  ..|.+++ +|..++++++|++|+|++|.+++.       
T Consensus       157 ~~~~-~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  228 (636)
T 4eco_A          157 DFSD-LIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE  228 (636)
T ss_dssp             GSCH-HHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS
T ss_pred             hHHH-HHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccc
Confidence            4321 11222222322221110      11112222222  2456666 777777777777777777777764       


Q ss_pred             ----------cccccc--CCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCc-Ccc-cCCccccCC------CCCc
Q 041562          236 ----------IKNGIV--NLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNS-LSG-SLPSSLKNC------INLT  295 (653)
Q Consensus       236 ----------~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~  295 (653)
                                +|..++  ++++|++|++++|++.+.+|..++++++|++|++++|+ +++ .+|..++.+      ++|+
T Consensus       229 ~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~  308 (636)
T 4eco_A          229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ  308 (636)
T ss_dssp             CTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC
T ss_pred             ccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC
Confidence                      777777  77788888888887777777777777888888888877 776 677766665      7788


Q ss_pred             EEEccCCcCccccCh-hhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCC-CCEEECC
Q 041562          296 LLNLQSNFFEGDISV-FNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKS-LSFLSLS  373 (653)
Q Consensus       296 ~L~L~~n~l~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls  373 (653)
                      +|++++|.++ .+|. ..++.+++|++|++++|.++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|+++
T Consensus       309 ~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls  385 (636)
T 4eco_A          309 IIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFA  385 (636)
T ss_dssp             EEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECC
T ss_pred             EEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEcc
Confidence            8888888777 6663 257777888888888888877777 7777788888888888877 67777777777 8888888


Q ss_pred             CCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCC--CCCCCcCEEEccCCcCcccchhhhcCCccCCeeeC
Q 041562          374 NNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSA--NGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDL  451 (653)
Q Consensus       374 ~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  451 (653)
                      +|.++.++..+. ...+++|+.|++++|.+.+.+|..+.....  -.+++|++|++++|++++..+..+..+++|++|++
T Consensus       386 ~N~l~~lp~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~L  464 (636)
T 4eco_A          386 HNKLKYIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL  464 (636)
T ss_dssp             SSCCSSCCSCCC-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEEC
T ss_pred             CCcCcccchhhh-hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEEC
Confidence            888876664321 122347888888888888777764431111  14568999999999999544445667999999999


Q ss_pred             cCCcCccCCchh-hcCC-------CCCCEEEccCCcCcccCCcccc--CCCCCCcccccccccccccccccccCCccccc
Q 041562          452 SFNQLTGSVPRF-LGNM-------SSLFHIDFSNNLISGEFPKEFC--RLPALTPEQDKNKANESYLEFSLFKGSNNFIG  521 (653)
Q Consensus       452 s~n~l~~~~~~~-~~~l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  521 (653)
                      ++|+++ .+|.. +...       ++|++|++++|+++ .+|..+.  .++                             
T Consensus       465 s~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~-----------------------------  513 (636)
T 4eco_A          465 MGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP-----------------------------  513 (636)
T ss_dssp             CSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT-----------------------------
T ss_pred             CCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC-----------------------------
Confidence            999999 55543 3332       38999999999998 6666554  333                             


Q ss_pred             ccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeC------CCCeeeeecCcccccC
Q 041562          522 EYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDL------SKNHLSGEIPVSLKRL  595 (653)
Q Consensus       522 ~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdL------s~N~l~~~ip~~l~~l  595 (653)
                                                 .|+.|+|++|++++ +|..+.++++|++|+|      ++|++.+.+|..+..+
T Consensus       514 ---------------------------~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l  565 (636)
T 4eco_A          514 ---------------------------YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC  565 (636)
T ss_dssp             ---------------------------TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred             ---------------------------CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC
Confidence                                       78999999999997 8999999999999999      5688999999999999


Q ss_pred             CCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCCC
Q 041562          596 HFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGA  635 (653)
Q Consensus       596 ~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~  635 (653)
                      ++|++|++++|++ +.||.. .+.++....+.+|+..|-.
T Consensus       566 ~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          566 PSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISID  603 (636)
T ss_dssp             SSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred             CCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcccc
Confidence            9999999999999 799986 3478888899999988843

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.4e-46  Score=415.88  Aligned_cols=478  Identities=18%  Similarity=0.185  Sum_probs=360.2

Q ss_pred             ccccceEeCC---CCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCc
Q 041562           63 CLWEGIKCDA---NGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIP  138 (653)
Q Consensus        63 c~w~gv~c~~---~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip  138 (653)
                      |++.+++.-.   ..+++.|+|+++.+++..+..|.++++|++|+|++|.+++..|..+.. ++|++|+|++|.++ .+|
T Consensus        12 ~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~   90 (549)
T 2z81_A           12 GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLS   90 (549)
T ss_dssp             CTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCC
T ss_pred             CCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccC
Confidence            3455554422   358999999999999999999999999999999999999988888887 99999999999999 566


Q ss_pred             hHHHhcCCCCcEEEccCCcCccc-CChhhhhcCCCCCCEEEccCCcCccCCC-ccCCCCCCCCEEEcccCCCCCCccccc
Q 041562          139 STIFRLTQNLITFNVSNNSFTGL-ISWSAWVDSFCSIRHLDLSNNRFTGPVP-LGLGSCSRLKTFRAGFNYLTGSLPDDI  216 (653)
Q Consensus       139 ~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l  216 (653)
                      ...+..+++|++|++++|.+++. .+..+  ..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+
T Consensus        91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A           91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLF--PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             HHHHTTCTTCCEEECTTCCCSSSCSSCSC--TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             HHHhccCCCCcEEECCCCcccccchhhhh--hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence            66667899999999999999874 33333  379999999999999555554 689999999999999999999999999


Q ss_pred             cCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCccc--C-ccccCCCCCCeEEeecCcCcccCC----cccc
Q 041562          217 YTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLI--P-RDIGKLTNLESLVLHNNSLSGSLP----SSLK  289 (653)
Q Consensus       217 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p-~~l~~l~~L~~L~L~~n~l~~~~p----~~l~  289 (653)
                      ..+++|++|+++.|.+.......+..+++|++|++++|++++..  | .....+++|+.|++++|.+++..+    ..+.
T Consensus       169 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~  248 (549)
T 2z81_A          169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR  248 (549)
T ss_dssp             TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGG
T ss_pred             hccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhh
Confidence            99999999999999987433333467999999999999998752  2 223457899999999998876443    3346


Q ss_pred             CCCCCcEEEccCCcCccccC-----hhhccCCCCcCEEEccCCccccc-----CCccCcCCCCCCeEEccCccccccCch
Q 041562          290 NCINLTLLNLQSNFFEGDIS-----VFNFSTLLKLRVLDLGSNLFTGS-----LPITLNSCKSLTAVNLARNQLEGQISP  359 (653)
Q Consensus       290 ~l~~L~~L~L~~n~l~~~i~-----~~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~  359 (653)
                      .+++|+.+++++|.+.+...     ...+..+++|+.|++.++.+...     ++..+...++|++|++++|.+. .+|.
T Consensus       249 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~  327 (549)
T 2z81_A          249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPC  327 (549)
T ss_dssp             GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCH
T ss_pred             hhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCH
Confidence            77899999999998765211     11345677788888887766532     1111233467888888888876 5565


Q ss_pred             hh-cCCCCCCEEECCCCCCCCCC-cchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccch
Q 041562          360 GI-VALKSLSFLSLSNNSLTNIT-GAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVP  437 (653)
Q Consensus       360 ~l-~~l~~L~~L~Ls~n~l~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  437 (653)
                      .+ ..+++|++|++++|+++... .....+..+++|+.|++++|.+.+..+..   ..+..+++|++|++++|+++ .+|
T Consensus       328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~~~l~~L~~L~Ls~N~l~-~lp  403 (549)
T 2z81_A          328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG---EILLTLKNLTSLDISRNTFH-PMP  403 (549)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHH---HHGGGCTTCCEEECTTCCCC-CCC
T ss_pred             HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccch---hhhhcCCCCCEEECCCCCCc-cCC
Confidence            55 46788888888888876421 11223567788888888888776432100   11345678888888888887 577


Q ss_pred             hhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCc
Q 041562          438 SWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSN  517 (653)
Q Consensus       438 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  517 (653)
                      ..+..+++|++|++++|++. .+|..+  .++|++|++++|++++.+    ..++.|+.++++++...            
T Consensus       404 ~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~------------  464 (549)
T 2z81_A          404 DSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK------------  464 (549)
T ss_dssp             SCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS------------
T ss_pred             hhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC------------
Confidence            77777888888888888877 334333  257888888888887643    46677777776653221            


Q ss_pred             ccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecC
Q 041562          518 NFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIP  589 (653)
Q Consensus       518 ~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip  589 (653)
                                          .+|. .+.++ .|++|+|++|++++.+|..++.+++|++||+++|++++..|
T Consensus       465 --------------------~ip~-~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          465 --------------------TLPD-ASLFP-VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             --------------------SCCC-GGGCT-TCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             --------------------cCCC-cccCc-cCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence                                1222 12344 89999999999999999999999999999999999998776

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-46  Score=414.01  Aligned_cols=455  Identities=22%  Similarity=0.248  Sum_probs=378.5

Q ss_pred             CEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEcc
Q 041562          101 SHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLS  180 (653)
Q Consensus       101 ~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls  180 (653)
                      ++||+++|.++ .+|..+. ++|++|+|++|.++ .++...+..+++|++|++++|.+++..|..+.  .+++|++|+++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS-QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFK--FNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC-TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGT--TCTTCCEEECC
T ss_pred             ceEecCCCCcc-ccccccc-ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhh--cccCCCEEecC
Confidence            68999999999 5776665 89999999999999 55555667799999999999999998776654  79999999999


Q ss_pred             CCcCccCCCccCCCCCCCCEEEcccCCCCC-CccccccCCCCCCEEeccCCcCcccccccccCCCCC--cEEEcccCcC-
Q 041562          181 NNRFTGPVPLGLGSCSRLKTFRAGFNYLTG-SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSL--RILELYSNSL-  256 (653)
Q Consensus       181 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L--~~L~L~~n~l-  256 (653)
                      +|+++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+   ..+..+++|  ++|++++|.+ 
T Consensus        78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~  151 (520)
T 2z7x_B           78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY  151 (520)
T ss_dssp             SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred             CCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence            99998 45655  89999999999999997 578999999999999999999986   457777888  9999999999 


Q ss_pred             -CcccCccccCCC-CCCeEEeecCcCcccCCc-cccCCCCCcEEEccCCc-------CccccChhhccCCCCcCEEEccC
Q 041562          257 -TGLIPRDIGKLT-NLESLVLHNNSLSGSLPS-SLKNCINLTLLNLQSNF-------FEGDISVFNFSTLLKLRVLDLGS  326 (653)
Q Consensus       257 -~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-------l~~~i~~~~~~~l~~L~~L~L~~  326 (653)
                       .+..|..+..+. +...+++++|.+.+.++. .+..+++|+.|++++|.       +.+.++  .+..+++|+.|++++
T Consensus       152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~  229 (520)
T 2z7x_B          152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNN  229 (520)
T ss_dssp             TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEE
T ss_pred             ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccccc
Confidence             778888777765 344677888888765554 56789999999999997       666665  688899999999999


Q ss_pred             CcccccCCccCc---CCCCCCeEEccCccccccCchhh-----cCCCCCCEEECCCCCCCCCC-cchhhccCCCCCcEEE
Q 041562          327 NLFTGSLPITLN---SCKSLTAVNLARNQLEGQISPGI-----VALKSLSFLSLSNNSLTNIT-GAIRILMGCKNLKVLI  397 (653)
Q Consensus       327 n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~-~~~~~l~~l~~L~~L~  397 (653)
                      |.+++..+..+.   ..++|++|++++|.++|.+|..+     ..+++|+.+++++|.+ .++ ..+..+....+|+.|+
T Consensus       230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~  308 (520)
T 2z7x_B          230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT  308 (520)
T ss_dssp             EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred             cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence            988764322221   24689999999999999999888     8899999999999998 565 2333332336799999


Q ss_pred             CCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCcc--CCchhhcCCCCCCEEEc
Q 041562          398 IPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG--SVPRFLGNMSSLFHIDF  475 (653)
Q Consensus       398 l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L  475 (653)
                      +++|.+.+...       +..+++|++|++++|++++.+|..+..+++|++|++++|++.+  .+|..+..+++|++|++
T Consensus       309 l~~n~l~~~~~-------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          309 VSGTRMVHMLC-------PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             EESSCCCCCCC-------CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred             cCCCccccccc-------hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence            99998765321       1367899999999999998899999999999999999999997  56678999999999999


Q ss_pred             cCCcCcccCCcc-ccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeee
Q 041562          476 SNNLISGEFPKE-FCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLD  554 (653)
Q Consensus       476 s~N~l~~~~p~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~  554 (653)
                      ++|++++.+|.. +..++                                                        .|+.|+
T Consensus       382 s~N~l~~~l~~~~~~~l~--------------------------------------------------------~L~~L~  405 (520)
T 2z7x_B          382 SQNSVSYDEKKGDCSWTK--------------------------------------------------------SLLSLN  405 (520)
T ss_dssp             CSSCCBCCGGGCSCCCCT--------------------------------------------------------TCCEEE
T ss_pred             CCCcCCcccccchhccCc--------------------------------------------------------cCCEEE
Confidence            999998766653 33322                                                        789999


Q ss_pred             cCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCC--CCCCCcCCCccCCCCCC
Q 041562          555 LSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG--GQFDTFPSSSFRGNPDL  632 (653)
Q Consensus       555 Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~--~~~~~~~~~~~~gn~~l  632 (653)
                      +++|.+++.+|..+.  ++|++|||++|+++ .+|..+..+++|++|++++|+++ .+|..  ..+..+....+.|||.-
T Consensus       406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCc
Confidence            999999988888775  79999999999999 89998889999999999999999 67764  45666778889999999


Q ss_pred             CCCC
Q 041562          633 CGAI  636 (653)
Q Consensus       633 c~~~  636 (653)
                      |..+
T Consensus       482 c~c~  485 (520)
T 2z7x_B          482 CSCP  485 (520)
T ss_dssp             CCHH
T ss_pred             ccCC
Confidence            9654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.9e-44  Score=410.65  Aligned_cols=445  Identities=19%  Similarity=0.209  Sum_probs=248.8

Q ss_pred             CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEc-cCCcCcccCChhhhhc--CCCC-----CCE------EE-ccCCcCc
Q 041562          121 NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNV-SNNSFTGLISWSAWVD--SFCS-----IRH------LD-LSNNRFT  185 (653)
Q Consensus       121 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~--~l~~-----L~~------L~-Ls~n~l~  185 (653)
                      ..++.|+|++|.+.|.+|+.+. .+++|++|+| ++|.+.|..+......  .+..     ++.      ++ .....+.
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~-~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGG-GCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCchHHh-ccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            5788999999999999998754 5999999999 8888877644221000  0000     000      00 0000000


Q ss_pred             -----------cCCCccCCCCCCCCEEEccc--CCCCCCccccccCCCCCCEEeccCCcCcc-----------------c
Q 041562          186 -----------GPVPLGLGSCSRLKTFRAGF--NYLTGSLPDDIYTATSLEQLSLSFNHISG-----------------S  235 (653)
Q Consensus       186 -----------~~~~~~~~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~-----------------~  235 (653)
                                 ...+........++.+.+..  |.+++ +|..++++++|++|+|++|.+++                 .
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                       00000001111222222222  44443 45555555555555555555554                 2


Q ss_pred             cccccc--CCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCc-Ccc-cCCccccCCC-------CCcEEEccCCcC
Q 041562          236 IKNGIV--NLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNS-LSG-SLPSSLKNCI-------NLTLLNLQSNFF  304 (653)
Q Consensus       236 ~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l  304 (653)
                      +|..++  ++++|++|++++|++.+.+|..++++++|++|+|++|+ +++ .+|..++.++       +|++|++++|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            555544  55555555555555555555555555555555555555 554 4444333332       555555555555


Q ss_pred             ccccCh-hhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCC-CCEEECCCCCCCCCCc
Q 041562          305 EGDISV-FNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKS-LSFLSLSNNSLTNITG  382 (653)
Q Consensus       305 ~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~  382 (653)
                      + .+|. ..+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++.++.
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~  636 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN  636 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCch
Confidence            5 4442 23555555555555555555 455 5555555555555555555 45555555555 5566666555554442


Q ss_pred             chhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhh-hcCCccCCeeeCcCCcCccCCc
Q 041562          383 AIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSW-IGKLKKLQVLDLSFNQLTGSVP  461 (653)
Q Consensus       383 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~  461 (653)
                      .+. ....++|+.|++++|.+.+.+|........-.+++|+.|++++|.++ .+|.. +..+++|+.|+|++|++. .+|
T Consensus       637 ~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip  713 (876)
T 4ecn_A          637 IFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIP  713 (876)
T ss_dssp             CCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred             hhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence            211 11122356666666665554443221111112345666666666666 34433 335666666666666666 444


Q ss_pred             hhhcC--------CCCCCEEEccCCcCcccCCcccc--CCCCCCcccccccccccccccccccCCccccccccccccccc
Q 041562          462 RFLGN--------MSSLFHIDFSNNLISGEFPKEFC--RLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHE  531 (653)
Q Consensus       462 ~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (653)
                      ..+..        +++|++|+|++|+++ .+|..+.  .+++|+.++++++.                            
T Consensus       714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~----------------------------  764 (876)
T 4ecn_A          714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC----------------------------  764 (876)
T ss_dssp             TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC----------------------------
T ss_pred             hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC----------------------------
Confidence            33322        226666666666666 5565555  56666655554321                            


Q ss_pred             ccceeeeCChHHHhHHhccCeeecCC------ccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCC
Q 041562          532 QYTWKTTASAAVSLLRLLLHMLDLSH------NNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAE  605 (653)
Q Consensus       532 ~~~l~g~ip~~l~~l~~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  605 (653)
                         +.+ +|..++.++ .|+.|+|++      |.+.+.+|..|+++++|++|+|++|++ +.+|..+.  ++|+.|+|++
T Consensus       765 ---L~~-lp~~l~~L~-~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~  836 (876)
T 4ecn_A          765 ---FSS-FPTQPLNSS-QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIAD  836 (876)
T ss_dssp             ---CSS-CCCGGGGCT-TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCS
T ss_pred             ---CCc-cchhhhcCC-CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCC
Confidence               112 444555555 788888866      888889999999999999999999999 68998765  6999999999


Q ss_pred             Cccccc
Q 041562          606 NNLRGS  611 (653)
Q Consensus       606 N~l~g~  611 (653)
                      |++...
T Consensus       837 N~l~~i  842 (876)
T 4ecn_A          837 NPNISI  842 (876)
T ss_dssp             CTTCEE
T ss_pred             CCCCcc
Confidence            998743

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.3e-43  Score=395.89  Aligned_cols=488  Identities=20%  Similarity=0.192  Sum_probs=269.8

Q ss_pred             CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562           74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN  152 (653)
Q Consensus        74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  152 (653)
                      ..+++|||++|.+++..+.+|.++++|++|||++|++++..|..|.. ++|++|+|++|+++ .+|...|..+++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEE
Confidence            36889999999998877788999999999999999998777777776 88999999999988 67777788889999999


Q ss_pred             ccCCcCcccCChhhhhcCCCCCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCccccccCCCC----CCEEec
Q 041562          153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATS----LEQLSL  227 (653)
Q Consensus       153 Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~----L~~L~L  227 (653)
                      +++|++++..+..+.  .+++|++|++++|.+++ ..|..++.+++|++|++++|.+++..+..+..+.+    ...+++
T Consensus       131 Ls~N~l~~l~~~~~~--~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l  208 (635)
T 4g8a_A          131 AVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  208 (635)
T ss_dssp             CTTSCCCCSTTCCCT--TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             CCCCcCCCCChhhhh--cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence            999988887665443  68889999999998875 46778888899999999999888777777665443    346788


Q ss_pred             cCCcCcccccccccCCCCCcEEEcccCcCCcc-cCccccCCCCCCeEEeecCcCc------ccC----------------
Q 041562          228 SFNHISGSIKNGIVNLTSLRILELYSNSLTGL-IPRDIGKLTNLESLVLHNNSLS------GSL----------------  284 (653)
Q Consensus       228 s~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~------~~~----------------  284 (653)
                      +.|.+....+ .......++.+++.+|..... .+..+..+..++...+..+...      ...                
T Consensus       209 s~n~l~~i~~-~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~  287 (635)
T 4g8a_A          209 SLNPMNFIQP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  287 (635)
T ss_dssp             TTCCCCEECT-TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred             ccCcccccCc-ccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence            8888774433 333344566677766654322 1223444444444443322111      111                


Q ss_pred             -----------CccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccc
Q 041562          285 -----------PSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL  353 (653)
Q Consensus       285 -----------p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  353 (653)
                                 +..+..+.+++.+++.++.+.. +.  .+.....++.|++.+|.+.+..+   ..+..|+.+++..|.+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~  361 (635)
T 4g8a_A          288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-VK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKG  361 (635)
T ss_dssp             EECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-CG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCS
T ss_pred             hhhhcccccchhhhhhhhccccccccccccccc-cc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccC
Confidence                       1122223344444444444331 11  22333444444444444432211   1223444444444443


Q ss_pred             cccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCc
Q 041562          354 EGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLK  433 (653)
Q Consensus       354 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~  433 (653)
                      ...  .....+++|+.+++++|.+............+.+|+.+++..+......+.      +..+++|+.+++.++...
T Consensus       362 ~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~------~~~l~~L~~l~l~~~~~~  433 (635)
T 4g8a_A          362 GNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN------FLGLEQLEHLDFQHSNLK  433 (635)
T ss_dssp             CCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC------CTTCTTCCEEECTTSEEE
T ss_pred             CCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc------ccccccccchhhhhcccc
Confidence            321  112234444444444444432222222233344444444444433222111      123344444444444333


Q ss_pred             ccch-hhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCc-ccCCccccCCCCCCcccccccccccccccc
Q 041562          434 GQVP-SWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS-GEFPKEFCRLPALTPEQDKNKANESYLEFS  511 (653)
Q Consensus       434 ~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~  511 (653)
                      ...+ ..+..+++++.+++++|++.+..+..+..+++|+.|++++|++. +..|..|..++                   
T Consensus       434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~-------------------  494 (635)
T 4g8a_A          434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-------------------  494 (635)
T ss_dssp             STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-------------------
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc-------------------
Confidence            2221 22334444444444444444444444444444444444444322 12333333333                   


Q ss_pred             cccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcc
Q 041562          512 LFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVS  591 (653)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~  591 (653)
                                                           +|++|||++|++++.+|..|+++++|++|+|++|++++..|..
T Consensus       495 -------------------------------------~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~  537 (635)
T 4g8a_A          495 -------------------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP  537 (635)
T ss_dssp             -------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG
T ss_pred             -------------------------------------ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhH
Confidence                                                 4555666666666555555666666666666666665555555


Q ss_pred             cccCCCCCeeecCCCcccccCCCCC-CC-CCcCCCccCCCCCCCCC
Q 041562          592 LKRLHFLSAFNVAENNLRGSIPSGG-QF-DTFPSSSFRGNPDLCGA  635 (653)
Q Consensus       592 l~~l~~L~~L~ls~N~l~g~iP~~~-~~-~~~~~~~~~gn~~lc~~  635 (653)
                      +..+++|++|++++|++++.+|..- .+ .++....+.|||.-|.+
T Consensus       538 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          538 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             HhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            5555666666666666655555431 11 33444555566665543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.8e-44  Score=394.57  Aligned_cols=454  Identities=22%  Similarity=0.270  Sum_probs=351.3

Q ss_pred             EEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccC
Q 041562           77 SHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN  155 (653)
Q Consensus        77 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~  155 (653)
                      +.++++++++++ +|..+.  ++|++|+|++|.+++..|..+.. ++|++|+|++|.+++ +++..+..+++|++|++++
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTT
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCC
Confidence            788999999985 776664  89999999999999887778877 999999999999994 4444566799999999999


Q ss_pred             CcCcccCChhhhhcCCCCCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCccccccCCCCC--CEEeccCCcC
Q 041562          156 NSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSL--EQLSLSFNHI  232 (653)
Q Consensus       156 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~Ls~n~i  232 (653)
                      |.++...+.     .+++|++|++++|.+++ .+|..++++++|++|++++|.+++.   .+..+++|  ++|++++|.+
T Consensus       110 N~l~~lp~~-----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          110 NRLQNISCC-----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             SCCCEECSC-----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred             CcCCccCcc-----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence            999854432     58899999999999987 4568899999999999999998863   34455555  9999999998


Q ss_pred             --cccccccccCCC-CCcEEEcccCcCCcccCc-cccCCCCCCeEEeecCc-----CcccCCccccCCCCCcEEEccCCc
Q 041562          233 --SGSIKNGIVNLT-SLRILELYSNSLTGLIPR-DIGKLTNLESLVLHNNS-----LSGSLPSSLKNCINLTLLNLQSNF  303 (653)
Q Consensus       233 --~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~L~~n~  303 (653)
                        .+..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|+     +.+. ...+..+++|+.|++.++.
T Consensus       182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~  260 (562)
T 3a79_B          182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIE  260 (562)
T ss_dssp             CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEE
T ss_pred             cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCc
Confidence              777888887765 122567888888776554 45678899999999985     2222 2356788889999888887


Q ss_pred             CccccCh--hhccCCCCcCEEEccCCcccccCCccC-----cCCCCCCeEEccCccccccCc-hhhc---CCCCCCEEEC
Q 041562          304 FEGDISV--FNFSTLLKLRVLDLGSNLFTGSLPITL-----NSCKSLTAVNLARNQLEGQIS-PGIV---ALKSLSFLSL  372 (653)
Q Consensus       304 l~~~i~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~l~---~l~~L~~L~L  372 (653)
                      +.+....  ......++|++|++++|.++|.+|..+     ..++.|+.+++..+.+  .+| ..+.   ...+|++|++
T Consensus       261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l  338 (562)
T 3a79_B          261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI  338 (562)
T ss_dssp             ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred             CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence            6542110  012234589999999999998888877     6666666667776766  344 2222   2367999999


Q ss_pred             CCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcc--cchhhhcCCccCCeee
Q 041562          373 SNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG--QVPSWIGKLKKLQVLD  450 (653)
Q Consensus       373 s~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~  450 (653)
                      ++|.+..+.    ....+++|++|++++|.+.+.+|...     ..+++|++|++++|++++  .+|..+..+++|++|+
T Consensus       339 ~~n~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  409 (562)
T 3a79_B          339 SDTPFIHMV----CPPSPSSFTFLNFTQNVFTDSVFQGC-----STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD  409 (562)
T ss_dssp             ESSCCCCCC----CCSSCCCCCEEECCSSCCCTTTTTTC-----CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred             cCCCccccc----CccCCCCceEEECCCCccccchhhhh-----cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence            999886443    12577888888998888887666543     467888889998888886  3456688888888999


Q ss_pred             CcCCcCccCCch-hhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCccccccccccccc
Q 041562          451 LSFNQLTGSVPR-FLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTF  529 (653)
Q Consensus       451 Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (653)
                      +++|++.+.+|. .+..+++|++|++++|++++.+|..+.                                        
T Consensus       410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~----------------------------------------  449 (562)
T 3a79_B          410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP----------------------------------------  449 (562)
T ss_dssp             CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC----------------------------------------
T ss_pred             CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc----------------------------------------
Confidence            998888874554 477888888899988888765554331                                        


Q ss_pred             ccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcc-cccCCCCCeeecCCCcc
Q 041562          530 HEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVS-LKRLHFLSAFNVAENNL  608 (653)
Q Consensus       530 ~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l  608 (653)
                                       + .|++|+|++|+++ .+|..+..+++|++|||++|+++ .+|.. +..+++|++|++++|++
T Consensus       450 -----------------~-~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          450 -----------------P-KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             -----------------T-TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred             -----------------C-cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence                             0 6899999999999 78888889999999999999999 67766 89999999999999999


Q ss_pred             cccCCC
Q 041562          609 RGSIPS  614 (653)
Q Consensus       609 ~g~iP~  614 (653)
                      .+..|.
T Consensus       510 ~c~c~~  515 (562)
T 3a79_B          510 DCTCPG  515 (562)
T ss_dssp             CCCHHH
T ss_pred             CCCcch
Confidence            987764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-43  Score=392.19  Aligned_cols=454  Identities=22%  Similarity=0.225  Sum_probs=362.4

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEE
Q 041562           99 HLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLD  178 (653)
Q Consensus        99 ~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~  178 (653)
                      ..+++|+++|.+++ +|..+. ++|++|+|++|.++ .++...+..+++|++|++++|.+++..|..+.  .+++|++|+
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~-~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~  106 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP-PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFL--FNQDLEYLD  106 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC-TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTT--TCTTCCEEE
T ss_pred             CCcEEEcCCCCCcc-CCCCCC-CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhC--CCCCCCEEE
Confidence            45899999999995 666554 89999999999999 56655677899999999999999988776654  689999999


Q ss_pred             ccCCcCccCCCccCCCCCCCCEEEcccCCCCC-CccccccCCCCCCEEeccCCcCcccccccccCCCCC--cEEEcccCc
Q 041562          179 LSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG-SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSL--RILELYSNS  255 (653)
Q Consensus       179 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L--~~L~L~~n~  255 (653)
                      +++|.++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+.   .+..+++|  ++|++++|+
T Consensus       107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred             CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence            9999998 56665  89999999999999987 4568899999999999999999853   45555666  999999999


Q ss_pred             C--CcccCccccCCC--CCCeEEeecCcCcccCCc-cccCCCCCcEEEccCCc-----CccccChhhccCCCCcCEEEcc
Q 041562          256 L--TGLIPRDIGKLT--NLESLVLHNNSLSGSLPS-SLKNCINLTLLNLQSNF-----FEGDISVFNFSTLLKLRVLDLG  325 (653)
Q Consensus       256 l--~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-----l~~~i~~~~~~~l~~L~~L~L~  325 (653)
                      +  ++..|..+..+.  .+ .+++++|.+.+.++. .+..+++|+.+++++|.     +.+.++  .+..+++|+.+++.
T Consensus       181 l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~--~l~~l~~L~~L~L~  257 (562)
T 3a79_B          181 YHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS--ELTRGPTLLNVTLQ  257 (562)
T ss_dssp             CCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH--HHHSCSSCEEEEEE
T ss_pred             ccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH--HHhccCcceEEEec
Confidence            9  888888887764  33 567888888776554 45678899999999985     222232  57788999999998


Q ss_pred             CCccccc----CCccCcCCCCCCeEEccCccccccCchhh-----cCCCCCCEEECCCCCCCCCCc-chhhccCCCCCcE
Q 041562          326 SNLFTGS----LPITLNSCKSLTAVNLARNQLEGQISPGI-----VALKSLSFLSLSNNSLTNITG-AIRILMGCKNLKV  395 (653)
Q Consensus       326 ~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~  395 (653)
                      ++.+.+.    ++..+ ..++|++|++++|.++|.+|..+     ..++.|+.+++..+.+ .++. .+..+....+|+.
T Consensus       258 ~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~  335 (562)
T 3a79_B          258 HIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKM  335 (562)
T ss_dssp             EEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSE
T ss_pred             CCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceE
Confidence            8877642    12222 23589999999999998888877     5666666666776766 4442 2222223467999


Q ss_pred             EECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccC--CchhhcCCCCCCEE
Q 041562          396 LIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGS--VPRFLGNMSSLFHI  473 (653)
Q Consensus       396 L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L  473 (653)
                      |++++|.+.....       ...+++|++|++++|.+++.+|..+..+++|++|++++|++++.  +|..+..+++|++|
T Consensus       336 L~l~~n~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  408 (562)
T 3a79_B          336 LSISDTPFIHMVC-------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL  408 (562)
T ss_dssp             EEEESSCCCCCCC-------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred             EEccCCCcccccC-------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence            9999998754321       13678999999999999988999999999999999999999963  45678999999999


Q ss_pred             EccCCcCcccCCcc-ccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCe
Q 041562          474 DFSNNLISGEFPKE-FCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHM  552 (653)
Q Consensus       474 ~Ls~N~l~~~~p~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~  552 (653)
                      ++++|++++.+|.. +..++                                                        .|++
T Consensus       409 ~l~~N~l~~~~~~~~~~~l~--------------------------------------------------------~L~~  432 (562)
T 3a79_B          409 DVSLNSLNSHAYDRTCAWAE--------------------------------------------------------SILV  432 (562)
T ss_dssp             ECTTSCCBSCCSSCCCCCCT--------------------------------------------------------TCCE
T ss_pred             ECCCCcCCCccChhhhcCcc--------------------------------------------------------cCCE
Confidence            99999998756643 33322                                                        7899


Q ss_pred             eecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCC--CCCCCcCCCccCCCC
Q 041562          553 LDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG--GQFDTFPSSSFRGNP  630 (653)
Q Consensus       553 L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~--~~~~~~~~~~~~gn~  630 (653)
                      |+|++|++++.+|..+.  ++|++|||++|+++ .+|..+..+++|++|++++|+++ .+|..  ..+..+....+.|||
T Consensus       433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             EECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCC
T ss_pred             EECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCC
Confidence            99999999988887665  79999999999999 88888889999999999999999 67764  456677788899999


Q ss_pred             CCCCC
Q 041562          631 DLCGA  635 (653)
Q Consensus       631 ~lc~~  635 (653)
                      .-|..
T Consensus       509 ~~c~c  513 (562)
T 3a79_B          509 WDCTC  513 (562)
T ss_dssp             BCCCH
T ss_pred             cCCCc
Confidence            99864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.4e-42  Score=354.69  Aligned_cols=290  Identities=28%  Similarity=0.446  Sum_probs=186.2

Q ss_pred             CcCCHHhHHHHHHhhhcCCCCC--CCCCCCCCCcc--ccceEeCCC---CCEEEEEcCCCCcce--eccccccCCCCCCE
Q 041562           32 QACNQIDQDSLLSLGFNISSPG--LNWSSSTDCCL--WEGIKCDAN---GRVSHLWLPWKGLTG--TISLSIGNLTHLSH  102 (653)
Q Consensus        32 ~~~~~~~~~~ll~~k~~~~~~~--~~W~~~~~~c~--w~gv~c~~~---~~v~~L~L~~~~l~g--~~~~~l~~l~~L~~  102 (653)
                      +.|.++|++||++||+++.++.  .+|..+.+||.  |.||+|+..   ++|++|+|+++.++|  .+|+.++++++|++
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~   80 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence            3699999999999999998765  78987889998  999999863   899999999999999  99999999999999


Q ss_pred             EECCC-CCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEcc
Q 041562          103 LNLSH-NRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLS  180 (653)
Q Consensus       103 L~Ls~-n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls  180 (653)
                      |++++ |.+.+.+|..++. ++|++|+|++|.+++.+|..+ ..+++|++|++++|.+++.+|..+.  .+++|++|+++
T Consensus        81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~  157 (313)
T 1ogq_A           81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSIS--SLPNLVGITFD  157 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGG--GCTTCCEEECC
T ss_pred             eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCCCCEEeCCCCccCCcCChHHh--cCCCCCeEECc
Confidence            99995 9998888877766 777777777777776666543 3355566666666655555544432  35555555555


Q ss_pred             CCcCccCCCccCCCCC-CCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcc
Q 041562          181 NNRFTGPVPLGLGSCS-RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGL  259 (653)
Q Consensus       181 ~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  259 (653)
                      +|.+++.+|..+..++ +|++|++++|.+++                        .+|..+..++ |++|++++|++++.
T Consensus       158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~------------------------~~~~~~~~l~-L~~L~Ls~N~l~~~  212 (313)
T 1ogq_A          158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTG------------------------KIPPTFANLN-LAFVDLSRNMLEGD  212 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEE------------------------ECCGGGGGCC-CSEEECCSSEEEEC
T ss_pred             CCcccCcCCHHHhhhhhcCcEEECcCCeeec------------------------cCChHHhCCc-ccEEECcCCcccCc
Confidence            5555544554444444 44555555444444                        4444444444 55555555555444


Q ss_pred             cCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcC
Q 041562          260 IPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS  339 (653)
Q Consensus       260 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  339 (653)
                      .|..++.+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|. .+..+++|++|++++|.+++.+|.. ..
T Consensus       213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~-~~  289 (313)
T 1ogq_A          213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQG-GN  289 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred             CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh-HHhcCcCCCEEECcCCcccccCCCC-cc
Confidence            444455555555555555555433333 44455555555555555544442 4455555555555555555555543 44


Q ss_pred             CCCCCeEEccCcc
Q 041562          340 CKSLTAVNLARNQ  352 (653)
Q Consensus       340 l~~L~~L~L~~n~  352 (653)
                      +++|+.+++++|.
T Consensus       290 l~~L~~l~l~~N~  302 (313)
T 1ogq_A          290 LQRFDVSAYANNK  302 (313)
T ss_dssp             GGGSCGGGTCSSS
T ss_pred             ccccChHHhcCCC
Confidence            5555555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.5e-41  Score=366.52  Aligned_cols=370  Identities=19%  Similarity=0.191  Sum_probs=233.7

Q ss_pred             CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCc-cccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEc
Q 041562          173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSL-PDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILEL  251 (653)
Q Consensus       173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  251 (653)
                      +|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..|..+++|++|++++|.+.+..|..++++++|++|++
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            3444444444444434444444444444444444444333 233444445555555555444444444455555555555


Q ss_pred             ccCcCCcccCcc--ccCCCCCCeEEeecCcCcccCCcc-ccCCCCCcEEEccCCcCccccChhhccCC--CCcCEEEccC
Q 041562          252 YSNSLTGLIPRD--IGKLTNLESLVLHNNSLSGSLPSS-LKNCINLTLLNLQSNFFEGDISVFNFSTL--LKLRVLDLGS  326 (653)
Q Consensus       252 ~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~i~~~~~~~l--~~L~~L~L~~  326 (653)
                      ++|++++..|..  ++.+++|++|++++|.+++..|.. +.++++|++|++++|.+++..+. .+..+  .+|+.|++++
T Consensus       111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTT
T ss_pred             CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh-hhhcccccccccccccc
Confidence            555544432222  444555555555555554444433 44555555555555555433221 23222  4555555555


Q ss_pred             CcccccCCcc--------CcCCCCCCeEEccCccccccCchhhcCC---CCCCEEECCCCCCCCCCcchhhccCCCCCcE
Q 041562          327 NLFTGSLPIT--------LNSCKSLTAVNLARNQLEGQISPGIVAL---KSLSFLSLSNNSLTNITGAIRILMGCKNLKV  395 (653)
Q Consensus       327 n~l~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~  395 (653)
                      |.+.+..+..        +..+++|++|++++|.+.+..+..+...   ++|+.|++++|.......             
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------  256 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF-------------  256 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-------------
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc-------------
Confidence            5555333222        2345667777777777766666655433   667777777765542110             


Q ss_pred             EECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEc
Q 041562          396 LIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDF  475 (653)
Q Consensus       396 L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  475 (653)
                         ..+.+.+..+..+.  . ...++|++|++++|.+++..|..+..+++|++|++++|++.+..|..|..+++|++|++
T Consensus       257 ---~~~~~~~~~~~~~~--~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  330 (455)
T 3v47_A          257 ---GHTNFKDPDNFTFK--G-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL  330 (455)
T ss_dssp             ---TCCSSCCCCTTTTG--G-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ---chhhhccCcccccc--c-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence               01111111111000  0 12468999999999999889999999999999999999999888989999999999999


Q ss_pred             cCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeec
Q 041562          476 SNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDL  555 (653)
Q Consensus       476 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~L  555 (653)
                      ++|++++..|..|..++                                                        .|++|+|
T Consensus       331 s~N~l~~~~~~~~~~l~--------------------------------------------------------~L~~L~L  354 (455)
T 3v47_A          331 SQNFLGSIDSRMFENLD--------------------------------------------------------KLEVLDL  354 (455)
T ss_dssp             CSSCCCEECGGGGTTCT--------------------------------------------------------TCCEEEC
T ss_pred             CCCccCCcChhHhcCcc--------------------------------------------------------cCCEEEC
Confidence            99999877777766554                                                        6889999


Q ss_pred             CCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCCCC
Q 041562          556 SHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQF  618 (653)
Q Consensus       556 s~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~  618 (653)
                      ++|++++..|..|+.+++|++|||++|++++..+..+..+++|++|++++|++++.+|....+
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            999999988999999999999999999999766677889999999999999999999965433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.1e-40  Score=357.35  Aligned_cols=325  Identities=21%  Similarity=0.243  Sum_probs=143.9

Q ss_pred             CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CC-------------cCEEEccCCCCCCCCch
Q 041562           74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NY-------------IKIIDLSSNHFQGKIPS  139 (653)
Q Consensus        74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~-------------L~~L~Ls~n~l~~~ip~  139 (653)
                      .++++++++++.+ |.+|++++++++|++|++++|.+.|.+|..++. .+             +++|++++|.++ .+|.
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCC
Confidence            4677888888888 788888888888888888888888888877765 33             355666666555 3333


Q ss_pred             HHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCC
Q 041562          140 TIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTA  219 (653)
Q Consensus       140 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  219 (653)
                          ..++|++|++++|.+++. |.     ..++|++|++++|.+++ ++..   .++|++|++++|.+++ +| .++++
T Consensus        89 ----~~~~L~~L~l~~n~l~~l-p~-----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l  152 (454)
T 1jl5_A           89 ----LPPHLESLVASCNSLTEL-PE-----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNS  152 (454)
T ss_dssp             ----CCTTCSEEECCSSCCSSC-CC-----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred             ----CcCCCCEEEccCCcCCcc-cc-----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence                134555555555555552 21     13455555555555543 1110   1345555555555543 44 34455


Q ss_pred             CCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEc
Q 041562          220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNL  299 (653)
Q Consensus       220 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  299 (653)
                      ++|++|++++|++++ +|..+   .+|++|++++|++++ +| .++++++|++|++++|++++ +|...   ++|++|++
T Consensus       153 ~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEEC
T ss_pred             CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEEC
Confidence            555555555554442 23221   244445555444443 23 34444444444444444442 22211   24444444


Q ss_pred             cCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCC
Q 041562          300 QSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTN  379 (653)
Q Consensus       300 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  379 (653)
                      ++|.++ .+|  .+..+++|++|++++|.+++ +|..                           .++|++|++++|+++.
T Consensus       223 ~~n~l~-~lp--~~~~l~~L~~L~l~~N~l~~-l~~~---------------------------~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          223 GNNILE-ELP--ELQNLPFLTTIYADNNLLKT-LPDL---------------------------PPSLEALNVRDNYLTD  271 (454)
T ss_dssp             CSSCCS-SCC--CCTTCTTCCEEECCSSCCSS-CCSC---------------------------CTTCCEEECCSSCCSC
T ss_pred             cCCcCC-ccc--ccCCCCCCCEEECCCCcCCc-cccc---------------------------ccccCEEECCCCcccc
Confidence            444444 333  24444444444444444442 2221                           2344444444444443


Q ss_pred             CCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCC-ccCCeeeCcCCcCcc
Q 041562          380 ITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKL-KKLQVLDLSFNQLTG  458 (653)
Q Consensus       380 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~  458 (653)
                      ++..      .++|+.|++++|.+.+. +.        -.++|++|++++|++++ ++    .+ ++|++|++++|++.+
T Consensus       272 l~~~------~~~L~~L~ls~N~l~~l-~~--------~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~  331 (454)
T 1jl5_A          272 LPEL------PQSLTFLDVSENIFSGL-SE--------LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE  331 (454)
T ss_dssp             CCCC------CTTCCEEECCSSCCSEE-SC--------CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC
T ss_pred             cCcc------cCcCCEEECcCCccCcc-cC--------cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc
Confidence            3321      13444444444444331 00        01345555555555553 11    12 355666666666553


Q ss_pred             CCchhhcCCCCCCEEEccCCcCc
Q 041562          459 SVPRFLGNMSSLFHIDFSNNLIS  481 (653)
Q Consensus       459 ~~~~~~~~l~~L~~L~Ls~N~l~  481 (653)
                       +|..   +++|++|++++|+++
T Consensus       332 -lp~~---~~~L~~L~L~~N~l~  350 (454)
T 1jl5_A          332 -LPAL---PPRLERLIASFNHLA  350 (454)
T ss_dssp             -CCCC---CTTCCEEECCSSCCS
T ss_pred             -cccc---CCcCCEEECCCCccc
Confidence             3332   355666666666555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.4e-40  Score=356.01  Aligned_cols=386  Identities=21%  Similarity=0.193  Sum_probs=231.8

Q ss_pred             CEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEcc
Q 041562          101 SHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLS  180 (653)
Q Consensus       101 ~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls  180 (653)
                      +.++.+++.++ .+|.  -.++|++|+|++|.+++..|. .+..+++|++|++++|.+.+.++                 
T Consensus        13 ~~~~c~~~~l~-~lp~--l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~-----------------   71 (455)
T 3v47_A           13 YNAICINRGLH-QVPE--LPAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIR-----------------   71 (455)
T ss_dssp             TEEECCSSCCS-SCCC--CCTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEEC-----------------
T ss_pred             cccCcCCCCcc-cCCC--CCCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceEC-----------------
Confidence            34555655555 3333  115566666666655532232 23345555555555555543332                 


Q ss_pred             CCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCccccccc--ccCCCCCcEEEcccCcCCc
Q 041562          181 NNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNG--IVNLTSLRILELYSNSLTG  258 (653)
Q Consensus       181 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~--l~~l~~L~~L~L~~n~l~~  258 (653)
                              +..|.++++|++|++++|.+++..|..+.++++|++|++++|.+.+..+..  +..+++|++|++++|++++
T Consensus        72 --------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  143 (455)
T 3v47_A           72 --------NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK  143 (455)
T ss_dssp             --------TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS
T ss_pred             --------cccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc
Confidence                    233444444444444444444444444444444444454444444433322  4445555555555555544


Q ss_pred             ccCcc-ccCCCCCCeEEeecCcCcccCCccccCC--CCCcEEEccCCcCccccCh-------hhccCCCCcCEEEccCCc
Q 041562          259 LIPRD-IGKLTNLESLVLHNNSLSGSLPSSLKNC--INLTLLNLQSNFFEGDISV-------FNFSTLLKLRVLDLGSNL  328 (653)
Q Consensus       259 ~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~i~~-------~~~~~l~~L~~L~L~~n~  328 (653)
                      ..|.. ++++++|++|++++|.+.+..+..+..+  .+|+.|++++|.+.+..+.       ..+..+++|++|++++|.
T Consensus       144 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  223 (455)
T 3v47_A          144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG  223 (455)
T ss_dssp             CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred             cCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence            44433 4445555555555555554444444433  3455555555554421110       012234556666666666


Q ss_pred             ccccCCccCcCC---CCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCc
Q 041562          329 FTGSLPITLNSC---KSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDE  405 (653)
Q Consensus       329 l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~  405 (653)
                      +++..|..+...   ++|+.|++++|...+....              .+.+.........-...++|+.+++++|.+.+
T Consensus       224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  289 (455)
T 3v47_A          224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA  289 (455)
T ss_dssp             CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred             ccccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccc
Confidence            665555444332   5666666666655432110              11111110000001123566777777777666


Q ss_pred             cCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCC
Q 041562          406 TMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFP  485 (653)
Q Consensus       406 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  485 (653)
                      ..+..+     ..+++|++|++++|++++..|..+..+++|++|++++|++.+..|..+..+++|++|++++|++++..|
T Consensus       290 ~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  364 (455)
T 3v47_A          290 LLKSVF-----SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD  364 (455)
T ss_dssp             ECTTTT-----TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred             cchhhc-----ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence            655433     467899999999999998888899999999999999999998889999999999999999999998778


Q ss_pred             ccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccc
Q 041562          486 KEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIP  565 (653)
Q Consensus       486 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p  565 (653)
                      ..|..++                                                        .|++|+|++|++++..+
T Consensus       365 ~~~~~l~--------------------------------------------------------~L~~L~L~~N~l~~~~~  388 (455)
T 3v47_A          365 QSFLGLP--------------------------------------------------------NLKELALDTNQLKSVPD  388 (455)
T ss_dssp             TTTTTCT--------------------------------------------------------TCCEEECCSSCCSCCCT
T ss_pred             hhccccc--------------------------------------------------------cccEEECCCCccccCCH
Confidence            7776654                                                        68899999999998777


Q ss_pred             cccccCCCCCeEeCCCCeeeeecCc
Q 041562          566 DQISQLTNLERMDLSKNHLSGEIPV  590 (653)
Q Consensus       566 ~~l~~l~~L~~LdLs~N~l~~~ip~  590 (653)
                      ..++.+++|++|++++|++++..|.
T Consensus       389 ~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          389 GIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hHhccCCcccEEEccCCCcccCCCc
Confidence            7889999999999999999988773

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.5e-40  Score=352.68  Aligned_cols=404  Identities=22%  Similarity=0.280  Sum_probs=252.0

Q ss_pred             cCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCC
Q 041562           95 GNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCS  173 (653)
Q Consensus        95 ~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~  173 (653)
                      .+.++|++|++++|.+ |.+|..++. ++|++|++++|.+.|.+|..+. .+++|+.+++..|.             ..+
T Consensus         8 ~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~-------------~~~   72 (454)
T 1jl5_A            8 VSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCL-------------DRQ   72 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHH-------------HHT
T ss_pred             cccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhh-------------ccC
Confidence            3456777777777777 566666665 6677777777666666666533 24444333333321             135


Q ss_pred             CCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEccc
Q 041562          174 IRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS  253 (653)
Q Consensus       174 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  253 (653)
                      +++|++++|.+++ +|..   .++|++|++++|.+++ +|..   .++|++|++++|.+.+ ++..   .++|++|++++
T Consensus        73 l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~  140 (454)
T 1jl5_A           73 AHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSN  140 (454)
T ss_dssp             CSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCS
T ss_pred             CCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcC
Confidence            6888888888775 3331   3678888888888885 6643   3788888888888874 2321   16888999999


Q ss_pred             CcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccC
Q 041562          254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSL  333 (653)
Q Consensus       254 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~  333 (653)
                      |++++ +| .++++++|++|++++|++++ +|..+   ++|++|++++|.+++ +|  .++.+++|++|++++|.+++ +
T Consensus       141 n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~-l  210 (454)
T 1jl5_A          141 NQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKK-L  210 (454)
T ss_dssp             SCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSS-C
T ss_pred             CCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCc-C
Confidence            98886 66 58888899999999998884 56543   588999999998885 66  57889999999999998885 4


Q ss_pred             CccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccc
Q 041562          334 PITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRL  413 (653)
Q Consensus       334 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  413 (653)
                      |...   ++|++|++++|.+. .+| .+..+++|++|++++|+++.++.      ..++|+.|++++|.+.+ +|.    
T Consensus       211 ~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l~~-l~~----  274 (454)
T 1jl5_A          211 PDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLTD-LPE----  274 (454)
T ss_dssp             CCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCSC-CCC----
T ss_pred             CCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCcccc-cCc----
Confidence            4432   58999999999998 566 48899999999999999987664      24789999999999876 443    


Q ss_pred             cCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCC-CCCCEEEccCCcCcccCCccccCCC
Q 041562          414 TSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNM-SSLFHIDFSNNLISGEFPKEFCRLP  492 (653)
Q Consensus       414 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~  492 (653)
                          ..++|++|++++|++++ +|..   .++|++|++++|++.+ ++    .+ ++|++|++++|++++ +|..   ++
T Consensus       275 ----~~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~  337 (454)
T 1jl5_A          275 ----LPQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PP  337 (454)
T ss_dssp             ----CCTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred             ----ccCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CC
Confidence                24789999999999986 2221   2689999999999985 22    23 589999999999985 4432   12


Q ss_pred             CCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCC
Q 041562          493 ALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLT  572 (653)
Q Consensus       493 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~  572 (653)
                                                                              .|++|++++|+++ .+|.   .++
T Consensus       338 --------------------------------------------------------~L~~L~L~~N~l~-~lp~---~l~  357 (454)
T 1jl5_A          338 --------------------------------------------------------RLERLIASFNHLA-EVPE---LPQ  357 (454)
T ss_dssp             --------------------------------------------------------TCCEEECCSSCCS-CCCC---CCT
T ss_pred             --------------------------------------------------------cCCEEECCCCccc-cccc---hhh
Confidence                                                                    5677777777777 3555   356


Q ss_pred             CCCeEeCCCCeeee--ecCcccccC-------------CCCCeeecCCCcccc--cCCCCCCCCCcCCCccCCCCCCC
Q 041562          573 NLERMDLSKNHLSG--EIPVSLKRL-------------HFLSAFNVAENNLRG--SIPSGGQFDTFPSSSFRGNPDLC  633 (653)
Q Consensus       573 ~L~~LdLs~N~l~~--~ip~~l~~l-------------~~L~~L~ls~N~l~g--~iP~~~~~~~~~~~~~~gn~~lc  633 (653)
                      +|++||+++|++++  .+|.++..+             ++|++|++++|+++|  .||..     +....+.+|..-|
T Consensus       358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s-----l~~L~~~~~~~~~  430 (454)
T 1jl5_A          358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES-----VEDLRMNSERVVD  430 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------------------
T ss_pred             hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh-----HhheeCcCcccCC
Confidence            77777777777776  667777666             889999999999998  78853     3344455554433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.6e-39  Score=360.34  Aligned_cols=463  Identities=21%  Similarity=0.226  Sum_probs=370.9

Q ss_pred             CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562           74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN  152 (653)
Q Consensus        74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  152 (653)
                      .+++.|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.. ++|++|+|++|+++ .+|...+..+++|++|+
T Consensus        76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~  154 (635)
T 4g8a_A           76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELN  154 (635)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeec
Confidence            47999999999999888889999999999999999999877777776 99999999999999 67777788899999999


Q ss_pred             ccCCcCcccC-ChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCC----CEEEcccCCCCCCccccccCCCCCCEEec
Q 041562          153 VSNNSFTGLI-SWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRL----KTFRAGFNYLTGSLPDDIYTATSLEQLSL  227 (653)
Q Consensus       153 Ls~n~l~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  227 (653)
                      +++|.+++.. |..+.  .+++|++|++++|++++..+..+..+.++    ..++++.|.+.. ++........++.+++
T Consensus       155 Ls~N~l~~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~~~~~~~~~~l~l  231 (635)
T 4g8a_A          155 VAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTL  231 (635)
T ss_dssp             CCSSCCCCCCCCGGGG--GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTTTTTCEEEEEEE
T ss_pred             cccCccccCCCchhhc--cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc-cCcccccchhhhhhhh
Confidence            9999998753 44333  68999999999999998888877665544    478899998884 4444444556677777


Q ss_pred             cCCcCccc-ccccccCCCCCcEEEccc------------------------------CcCC---cccCccccCCCCCCeE
Q 041562          228 SFNHISGS-IKNGIVNLTSLRILELYS------------------------------NSLT---GLIPRDIGKLTNLESL  273 (653)
Q Consensus       228 s~n~i~~~-~~~~l~~l~~L~~L~L~~------------------------------n~l~---~~~p~~l~~l~~L~~L  273 (653)
                      .+|..... .+..+..+..++...+..                              +...   ...+..+..+.+++.+
T Consensus       232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l  311 (635)
T 4g8a_A          232 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSF  311 (635)
T ss_dssp             ESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEE
T ss_pred             hcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccc
Confidence            77754422 223344455544444322                              2111   1122344556788899


Q ss_pred             EeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccc
Q 041562          274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL  353 (653)
Q Consensus       274 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  353 (653)
                      ++.++.+...  ..+.....|+.|++.+|.+.+ ++   ...++.|+.+++..|.+....  ....+++|+.+++++|.+
T Consensus       312 ~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~-~~---~~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l  383 (635)
T 4g8a_A          312 SLVSVTIERV--KDFSYNFGWQHLELVNCKFGQ-FP---TLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGL  383 (635)
T ss_dssp             EEESCEEEEC--GGGGSCCCCSEEEEESCEESS-CC---CCBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCC
T ss_pred             cccccccccc--cccccchhhhhhhcccccccC-cC---cccchhhhhcccccccCCCCc--ccccccccccchhhcccc
Confidence            9998887743  346677899999999998873 33   235678999999999876432  355789999999999988


Q ss_pred             c--ccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCc
Q 041562          354 E--GQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECK  431 (653)
Q Consensus       354 ~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~  431 (653)
                      .  +..+..+..+.+|+.+++..+....++   ..+..+++|+.+++..+......+..    .+..+++++.+++++|.
T Consensus       384 ~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~l~~l~~l~ls~n~  456 (635)
T 4g8a_A          384 SFKGCCSQSDFGTISLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIYLDISHTH  456 (635)
T ss_dssp             BEEEECCHHHHSCSCCCEEECCSCSEEEEC---SCCTTCTTCCEEECTTSEEESTTSSC----TTTTCTTCCEEECTTSC
T ss_pred             ccccccccchhhhhhhhhhhcccccccccc---ccccccccccchhhhhcccccccccc----ccccccccccccccccc
Confidence            5  345667788999999999999876544   34677899999999988776655432    34578999999999999


Q ss_pred             CcccchhhhcCCccCCeeeCcCCcCc-cCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccccccccccccc
Q 041562          432 LKGQVPSWIGKLKKLQVLDLSFNQLT-GSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEF  510 (653)
Q Consensus       432 l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~  510 (653)
                      +.+..+..+..++.|++|++++|++. +..|..+..+++|++|+|++|++++..|..|.+++                  
T Consensus       457 l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~------------------  518 (635)
T 4g8a_A          457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------------------  518 (635)
T ss_dssp             CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT------------------
T ss_pred             cccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC------------------
Confidence            99989999999999999999999854 45788899999999999999999988888877665                  


Q ss_pred             ccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCc
Q 041562          511 SLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPV  590 (653)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~  590 (653)
                                                            +|++|+|++|+|++..|..|+.+++|++|||++|++++..|.
T Consensus       519 --------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  560 (635)
T 4g8a_A          519 --------------------------------------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  560 (635)
T ss_dssp             --------------------------------------TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred             --------------------------------------CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence                                                  688999999999999999999999999999999999999999


Q ss_pred             ccccC-CCCCeeecCCCccccc
Q 041562          591 SLKRL-HFLSAFNVAENNLRGS  611 (653)
Q Consensus       591 ~l~~l-~~L~~L~ls~N~l~g~  611 (653)
                      .+..+ ++|++|++++|++...
T Consensus       561 ~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          561 ELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CTTCCCTTCCEEECTTCCBCCS
T ss_pred             HHHhhhCcCCEEEeeCCCCccc
Confidence            99988 6899999999999763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2e-37  Score=332.45  Aligned_cols=212  Identities=21%  Similarity=0.273  Sum_probs=107.5

Q ss_pred             cccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhc
Q 041562           91 SLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVD  169 (653)
Q Consensus        91 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  169 (653)
                      +..++++++|++|++++|.+++. | .++. ++|++|++++|.+++ +|   +..+++|++|++++|.+++. +    ..
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~----~~  103 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D----VT  103 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C----CT
T ss_pred             ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e----cC
Confidence            33556667777777777776653 3 2333 566666666666653 33   33455555555555555553 1    12


Q ss_pred             CCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEE
Q 041562          170 SFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL  249 (653)
Q Consensus       170 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  249 (653)
                      .+++|++|++++|.+++. +  ++.+++|++|++++|.+++. +  +..+++|++|++++|...+.+  .+..+++|++|
T Consensus       104 ~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L  175 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL  175 (457)
T ss_dssp             TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred             CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence            455555555555555542 2  55555555555555555542 1  445555555555555333232  24445555555


Q ss_pred             EcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562          250 ELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF  329 (653)
Q Consensus       250 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l  329 (653)
                      ++++|++++. |  ++.+++|+.|++++|++++.   .++.+++|++|++++|.+++ +|   +..+++|+.|++++|.+
T Consensus       176 ~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          176 DCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             ECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCC
T ss_pred             ECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcC
Confidence            5555555442 2  44455555555555555432   24444555555555555443 32   34444455555555544


Q ss_pred             cc
Q 041562          330 TG  331 (653)
Q Consensus       330 ~~  331 (653)
                      ++
T Consensus       246 ~~  247 (457)
T 3bz5_A          246 TE  247 (457)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.9e-37  Score=330.16  Aligned_cols=362  Identities=17%  Similarity=0.180  Sum_probs=245.9

Q ss_pred             CCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCC
Q 041562          111 SGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP  189 (653)
Q Consensus       111 ~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  189 (653)
                      .+..+..++. ++|++|++++|.+++ +| . +..+++|++|++++|.+++. +    ...+++|++|++++|.+++. +
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~-~----~~~l~~L~~L~Ls~N~l~~~-~  101 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL-D----LSQNTNLTYLACDSNKLTNL-D  101 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC-C----CTTCTTCSEEECCSSCCSCC-C
T ss_pred             CcccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE-c----cccCCCCCEEECcCCCCcee-e
Confidence            3344444444 888888888888884 55 2 45688888888888888875 2    23678888888888888764 2


Q ss_pred             ccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCC
Q 041562          190 LGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTN  269 (653)
Q Consensus       190 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  269 (653)
                        ++.+++|++|++++|.+++ +|  +..+++|++|++++|.+++.   .++.+++|++|++++|+..+.+  .++.+++
T Consensus       102 --~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~  171 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ  171 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred             --cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence              7788888888888888875 44  77788888888888888763   3777888888888888655554  4677888


Q ss_pred             CCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEcc
Q 041562          270 LESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLA  349 (653)
Q Consensus       270 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  349 (653)
                      |++|++++|++++ +|  +..+++|++|++++|.+++ +   .++.+++|++|++++|++++ +|  +..+++|+.|+++
T Consensus       172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~  241 (457)
T 3bz5_A          172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS  241 (457)
T ss_dssp             CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred             CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence            8888888888875 44  7777888888888888774 2   36677888888888888876 45  6777888888888


Q ss_pred             CccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccC
Q 041562          350 RNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAE  429 (653)
Q Consensus       350 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~  429 (653)
                      +|++++..   +..+++|+.|++++|++                +.+++++|.+.+.+|.       ..+++|+.|++++
T Consensus       242 ~N~l~~~~---~~~l~~L~~L~l~~n~L----------------~~L~l~~n~~~~~~~~-------~~l~~L~~L~Ls~  295 (457)
T 3bz5_A          242 VNPLTELD---VSTLSKLTTLHCIQTDL----------------LEIDLTHNTQLIYFQA-------EGCRKIKELDVTH  295 (457)
T ss_dssp             SSCCSCCC---CTTCTTCCEEECTTCCC----------------SCCCCTTCTTCCEEEC-------TTCTTCCCCCCTT
T ss_pred             CCcCCCcC---HHHCCCCCEEeccCCCC----------------CEEECCCCccCCcccc-------cccccCCEEECCC
Confidence            88887643   34567777777766543                3445556655554442       3456777777777


Q ss_pred             CcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccc
Q 041562          430 CKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLE  509 (653)
Q Consensus       430 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~  509 (653)
                      |...+.+|.   ..++|+.|++++|             ++|++|++++|++++. +  +..++                 
T Consensus       296 n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~-----------------  339 (457)
T 3bz5_A          296 NTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNT-----------------  339 (457)
T ss_dssp             CTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCT-----------------
T ss_pred             Ccccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCC-----------------
Confidence            776666653   2344455544443             5677777777777652 2  33332                 


Q ss_pred             cccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecC
Q 041562          510 FSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIP  589 (653)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip  589 (653)
                                                             .|+.|++++|++++        ++.|+.|++++|.++|.  
T Consensus       340 ---------------------------------------~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~--  370 (457)
T 3bz5_A          340 ---------------------------------------KLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE--  370 (457)
T ss_dssp             ---------------------------------------TCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE--
T ss_pred             ---------------------------------------cCcEEECCCCCCCC--------ccccccccccCCcEEec--
Confidence                                                   46666666666664        23455556666666654  


Q ss_pred             cccccCCCCCeeecCCCcccccCCCC
Q 041562          590 VSLKRLHFLSAFNVAENNLRGSIPSG  615 (653)
Q Consensus       590 ~~l~~l~~L~~L~ls~N~l~g~iP~~  615 (653)
                         ..+..|..+++++|+++|.||..
T Consensus       371 ---~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          371 ---GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             ---EEEEECCCBCCBTTBEEEECCTT
T ss_pred             ---ceeeecCccccccCcEEEEcChh
Confidence               23445566667777777777653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.1e-36  Score=325.62  Aligned_cols=344  Identities=27%  Similarity=0.398  Sum_probs=187.6

Q ss_pred             CCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEE
Q 041562          146 QNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQL  225 (653)
Q Consensus       146 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  225 (653)
                      ++++.|+++++.+.....    ...+++|++|++++|.+++..+  +.++++|++|++++|.+++..+  +.++++|++|
T Consensus        46 ~~l~~L~l~~~~i~~l~~----~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HTCCEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             ccccEEecCCCCCccCcc----hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            344555555554443221    1134555555555555553322  5555555555555555553322  5555566666


Q ss_pred             eccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCc
Q 041562          226 SLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFE  305 (653)
Q Consensus       226 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  305 (653)
                      ++++|.+.+..+  +.++++|++|++++|.+.+. + .++.+++|++|++++ .+.+.  ..+.++++|++|++++|.+.
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCC
Confidence            666655553322  55556666666666655542 2 355566666666642 33322  12555666666666666555


Q ss_pred             cccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchh
Q 041562          306 GDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIR  385 (653)
Q Consensus       306 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  385 (653)
                       .++  .+..+++|++|++++|.+++..+  ++.+++|++|++++|.+.+.  +.+..+++|++|++++|.++.++.   
T Consensus       191 -~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---  260 (466)
T 1o6v_A          191 -DIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---  260 (466)
T ss_dssp             -CCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---
T ss_pred             -CCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---
Confidence             222  34555666666666666554333  44556666666666665532  245556666666666666554332   


Q ss_pred             hccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhc
Q 041562          386 ILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLG  465 (653)
Q Consensus       386 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  465 (653)
                       +..+++|+.|++++|.+.+..+       +..+++|++|++++|++++..+  +..+++|++|++++|++.+..|  +.
T Consensus       261 -~~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~  328 (466)
T 1o6v_A          261 -LSGLTKLTELKLGANQISNISP-------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS  328 (466)
T ss_dssp             -GTTCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG
T ss_pred             -hhcCCCCCEEECCCCccCcccc-------ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc
Confidence             4445555555555555443221       2345666666666666664333  5566666666666666665544  55


Q ss_pred             CCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHh
Q 041562          466 NMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSL  545 (653)
Q Consensus       466 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~  545 (653)
                      .+++|++|++++|++++.  ..+..++                                                     
T Consensus       329 ~l~~L~~L~l~~n~l~~~--~~l~~l~-----------------------------------------------------  353 (466)
T 1o6v_A          329 SLTKLQRLFFYNNKVSDV--SSLANLT-----------------------------------------------------  353 (466)
T ss_dssp             GCTTCCEEECCSSCCCCC--GGGTTCT-----------------------------------------------------
T ss_pred             cCccCCEeECCCCccCCc--hhhccCC-----------------------------------------------------
Confidence            666666666666666543  1222221                                                     


Q ss_pred             HHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeee
Q 041562          546 LRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSG  586 (653)
Q Consensus       546 l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~  586 (653)
                         .|+.|++++|++++..|  +..+++|+.|++++|.+++
T Consensus       354 ---~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          354 ---NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ---TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ---CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence               56667777777766655  6667777777777777764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.3e-36  Score=326.52  Aligned_cols=346  Identities=25%  Similarity=0.347  Sum_probs=296.2

Q ss_pred             CCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEE
Q 041562          170 SFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL  249 (653)
Q Consensus       170 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  249 (653)
                      .++++++|+++++.+.. +| .+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+..+  +.++++|++|
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            35789999999999874 44 48889999999999999996544  8999999999999999986554  9999999999


Q ss_pred             EcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562          250 ELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF  329 (653)
Q Consensus       250 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l  329 (653)
                      ++++|.+++..+  +..+++|++|++++|.+.+ ++ .+..+++|++|+++ |.+.+ ++  .+..+++|++|++++|.+
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~-~~--~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTD-LK--PLANLTTLERLDISSNKV  189 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCC-CG--GGTTCTTCCEEECCSSCC
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccC-ch--hhccCCCCCEEECcCCcC
Confidence            999999997633  8999999999999999985 34 58999999999997 44542 33  488999999999999999


Q ss_pred             cccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCC
Q 041562          330 TGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPD  409 (653)
Q Consensus       330 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  409 (653)
                      ++.  ..+..+++|++|++++|.+.+..+  ++.+++|++|++++|.++.+    ..+..+++|+.|++++|.+.+..+ 
T Consensus       190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~-  260 (466)
T 1o6v_A          190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI----GTLASLTNLTDLDLANNQISNLAP-  260 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc----hhhhcCCCCCEEECCCCccccchh-
Confidence            853  358889999999999999987655  77899999999999999865    357788999999999999876543 


Q ss_pred             cccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCcccc
Q 041562          410 NDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFC  489 (653)
Q Consensus       410 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  489 (653)
                            +..+++|++|++++|.+++..+  +..+++|++|++++|++.+..+  +..+++|++|++++|++++..|  +.
T Consensus       261 ------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~  328 (466)
T 1o6v_A          261 ------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS  328 (466)
T ss_dssp             ------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG
T ss_pred             ------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc
Confidence                  3578999999999999996544  8889999999999999987544  7889999999999999986544  22


Q ss_pred             CCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccc
Q 041562          490 RLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQIS  569 (653)
Q Consensus       490 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~  569 (653)
                      .++                                                        .|+.|++++|.+++.  ..+.
T Consensus       329 ~l~--------------------------------------------------------~L~~L~l~~n~l~~~--~~l~  350 (466)
T 1o6v_A          329 SLT--------------------------------------------------------KLQRLFFYNNKVSDV--SSLA  350 (466)
T ss_dssp             GCT--------------------------------------------------------TCCEEECCSSCCCCC--GGGT
T ss_pred             cCc--------------------------------------------------------cCCEeECCCCccCCc--hhhc
Confidence            222                                                        789999999999975  4789


Q ss_pred             cCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccc
Q 041562          570 QLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRG  610 (653)
Q Consensus       570 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  610 (653)
                      ++++|++|++++|++++..|  +..+++|++|++++|++++
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            99999999999999998877  8999999999999999997

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.2e-37  Score=333.76  Aligned_cols=347  Identities=23%  Similarity=0.234  Sum_probs=194.4

Q ss_pred             CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccC
Q 041562          175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSN  254 (653)
Q Consensus       175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  254 (653)
                      +.++.+++.++ .+|..+.  +++++|++++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            45566655555 3343332  34555555555555444444555555555555555555444445555555555555555


Q ss_pred             cCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCC
Q 041562          255 SLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLP  334 (653)
Q Consensus       255 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~  334 (653)
                      ++++..+..|+++++|++|+|++|++.+..+..+..++                         +|++|++++|.+++..+
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-------------------------~L~~L~l~~n~l~~~~~  145 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-------------------------NLKSLEVGDNDLVYISH  145 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-------------------------TCCEEEECCTTCCEECT
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccc-------------------------cCCEEECCCCccceeCh
Confidence            55443333444455555555555554444444444444                         44444444444444444


Q ss_pred             ccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCccccc
Q 041562          335 ITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLT  414 (653)
Q Consensus       335 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  414 (653)
                      ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++.++.  ..+..+++|+.|++++|...+.++....  
T Consensus       146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~--  221 (477)
T 2id5_A          146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTPNCL--  221 (477)
T ss_dssp             TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEECTTTT--
T ss_pred             hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCccccccCcccc--
Confidence            444555555555555555544444445555555555555555443322  1233444444444444443333333221  


Q ss_pred             CCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 041562          415 SANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPAL  494 (653)
Q Consensus       415 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  494 (653)
                         ...+|++|++++|++++..+..+..+++|++|+|++|++.+..+..+..+++|++|++++|++++..|..|..++  
T Consensus       222 ---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--  296 (477)
T 2id5_A          222 ---YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN--  296 (477)
T ss_dssp             ---TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT--
T ss_pred             ---cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcc--
Confidence               234788888888888755556777788888888888888777777777888888888888888776666665543  


Q ss_pred             CcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCC
Q 041562          495 TPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNL  574 (653)
Q Consensus       495 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L  574 (653)
                                                                            .|+.|+|++|.+++..+..|..+++|
T Consensus       297 ------------------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L  322 (477)
T 2id5_A          297 ------------------------------------------------------YLRVLNVSGNQLTTLEESVFHSVGNL  322 (477)
T ss_dssp             ------------------------------------------------------TCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred             ------------------------------------------------------cCCEEECCCCcCceeCHhHcCCCccc
Confidence                                                                  57778888888887777777788888


Q ss_pred             CeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCC
Q 041562          575 ERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP  613 (653)
Q Consensus       575 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  613 (653)
                      ++|+|++|.+....+.. .-...+..+++..+.....-|
T Consensus       323 ~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          323 ETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             CEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEES
T ss_pred             CEEEccCCCccCccchH-hHHhhhhccccCccCceeCCc
Confidence            88888888887543211 112223334455554444334

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.4e-35  Score=310.06  Aligned_cols=310  Identities=22%  Similarity=0.228  Sum_probs=232.2

Q ss_pred             CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCE
Q 041562          121 NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKT  200 (653)
Q Consensus       121 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  200 (653)
                      +++++|++++|.++ .+|..++..+++|++|++++|.+++..+..+.  .+++|++|++++|.+++..|..++++++|++
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            44555555555555 67777777788888888888888776654443  6788888888888888777777888888888


Q ss_pred             EEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcC
Q 041562          201 FRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSL  280 (653)
Q Consensus       201 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  280 (653)
                      |++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++.   .++.+++|+.|++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            88888888743333457788888888888888877777788888888888888888754   356677888888888877


Q ss_pred             cccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchh
Q 041562          281 SGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG  360 (653)
Q Consensus       281 ~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  360 (653)
                      ++     +...++|++|++++|.+.. ++.   ...++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..|..
T Consensus       199 ~~-----~~~~~~L~~L~l~~n~l~~-~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          199 ST-----LAIPIAVEELDASHNSINV-VRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             SE-----EECCSSCSEEECCSSCCCE-EEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             cc-----cCCCCcceEEECCCCeeee-ccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence            63     2334578888888887763 332   2346788888888887753  46777788888888888887777777


Q ss_pred             hcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhh
Q 041562          361 IVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWI  440 (653)
Q Consensus       361 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l  440 (653)
                      +..+++|++|++++|+++.++..                                ...+++|++|++++|+++ .+|..+
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~--------------------------------~~~l~~L~~L~L~~n~l~-~~~~~~  314 (390)
T 3o6n_A          268 FVKMQRLERLYISNNRLVALNLY--------------------------------GQPIPTLKVLDLSHNHLL-HVERNQ  314 (390)
T ss_dssp             GTTCSSCCEEECCSSCCCEEECS--------------------------------SSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred             ccccccCCEEECCCCcCcccCcc--------------------------------cCCCCCCCEEECCCCcce-ecCccc
Confidence            77788888888888777643321                                124678999999999988 577778


Q ss_pred             cCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCccc
Q 041562          441 GKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGE  483 (653)
Q Consensus       441 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  483 (653)
                      ..+++|++|++++|++++. +  +..+++|++|++++|++.+.
T Consensus       315 ~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          315 PQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             HHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             cccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            8899999999999999854 3  67889999999999998764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.7e-35  Score=310.89  Aligned_cols=336  Identities=22%  Similarity=0.210  Sum_probs=223.9

Q ss_pred             CCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEE
Q 041562          195 CSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLV  274 (653)
Q Consensus       195 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  274 (653)
                      ++++++++++++.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..|..++.+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45666777776666633223345666666666666666655555666666666666666666655555566666666666


Q ss_pred             eecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccc
Q 041562          275 LHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE  354 (653)
Q Consensus       275 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  354 (653)
                      +++|.++...+..+.++++|++|++++|.+++ ++...+..+++|++|++++|.+++.   .+..+++|+.|++++|.++
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            66666653333334556666666666665553 2223455555555555555555532   1333445555555555444


Q ss_pred             ccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcc
Q 041562          355 GQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG  434 (653)
Q Consensus       355 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  434 (653)
                      +.     ...++                          |+.|++++|.+.....        ..+++|++|++++|.+++
T Consensus       200 ~~-----~~~~~--------------------------L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~n~l~~  240 (390)
T 3o6n_A          200 TL-----AIPIA--------------------------VEELDASHNSINVVRG--------PVNVELTILKLQHNNLTD  240 (390)
T ss_dssp             EE-----ECCSS--------------------------CSEEECCSSCCCEEEC--------CCCSSCCEEECCSSCCCC
T ss_pred             cc-----CCCCc--------------------------ceEEECCCCeeeeccc--------cccccccEEECCCCCCcc
Confidence            21     12234                          4444444444433211        124689999999999985


Q ss_pred             cchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccccccccccccccccc
Q 041562          435 QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFK  514 (653)
Q Consensus       435 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  514 (653)
                      .  ..+..+++|++|++++|++.+..|..+..+++|++|++++|++++ +|..+..++                      
T Consensus       241 ~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~----------------------  295 (390)
T 3o6n_A          241 T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP----------------------  295 (390)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT----------------------
T ss_pred             c--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCC----------------------
Confidence            3  578889999999999999998889999999999999999999874 333222221                      


Q ss_pred             CCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCccccc
Q 041562          515 GSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKR  594 (653)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~  594 (653)
                                                        +|++|+|++|+++ .+|..+..+++|++|+|++|++++ +|  +..
T Consensus       296 ----------------------------------~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~  337 (390)
T 3o6n_A          296 ----------------------------------TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LST  337 (390)
T ss_dssp             ----------------------------------TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCT
T ss_pred             ----------------------------------CCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chh
Confidence                                              7899999999999 577788999999999999999984 44  678


Q ss_pred             CCCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCCCCC
Q 041562          595 LHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIV  637 (653)
Q Consensus       595 l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~  637 (653)
                      +++|++|++++|++.+.-. ...+..+....+.+++..|+.+.
T Consensus       338 ~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~~  379 (390)
T 3o6n_A          338 HHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKIDY  379 (390)
T ss_dssp             TCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTTC
T ss_pred             hccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceecccc
Confidence            8999999999999987422 23466677778899999998653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4e-35  Score=326.54  Aligned_cols=335  Identities=22%  Similarity=0.221  Sum_probs=239.5

Q ss_pred             CCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEE
Q 041562          195 CSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLV  274 (653)
Q Consensus       195 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  274 (653)
                      +.+++.+++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+.+++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45677777777777644444456677777777777777766666777777777777777777766666667777777777


Q ss_pred             eecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccc
Q 041562          275 LHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE  354 (653)
Q Consensus       275 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  354 (653)
                      |++|.+++..+..|.++++|++|++++|.+++..+ ..+..+++|++|++++|.+++.   .+..+++|+.|++++|.++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence            77777764444445666666666666666664333 3556666666666666666542   1344555666666665554


Q ss_pred             ccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcc
Q 041562          355 GQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG  434 (653)
Q Consensus       355 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  434 (653)
                      +.     ...++|+.|++++|.++.++.                          .        ..++|+.|++++|.+++
T Consensus       206 ~l-----~~~~~L~~L~ls~n~l~~~~~--------------------------~--------~~~~L~~L~L~~n~l~~  246 (597)
T 3oja_B          206 TL-----AIPIAVEELDASHNSINVVRG--------------------------P--------VNVELTILKLQHNNLTD  246 (597)
T ss_dssp             EE-----ECCTTCSEEECCSSCCCEEEC--------------------------S--------CCSCCCEEECCSSCCCC
T ss_pred             cc-----cCCchhheeeccCCccccccc--------------------------c--------cCCCCCEEECCCCCCCC
Confidence            31     223445555555555443221                          1        23579999999999985


Q ss_pred             cchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccccccccccccccccc
Q 041562          435 QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFK  514 (653)
Q Consensus       435 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  514 (653)
                        +..+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|++++ +|..+..++                      
T Consensus       247 --~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~----------------------  301 (597)
T 3oja_B          247 --TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP----------------------  301 (597)
T ss_dssp             --CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT----------------------
T ss_pred             --ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC----------------------
Confidence              4678899999999999999999999999999999999999999985 333332222                      


Q ss_pred             CCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCccccc
Q 041562          515 GSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKR  594 (653)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~  594 (653)
                                                        .|+.|+|++|.++ .+|..+..+++|++|+|++|.+++. |  +..
T Consensus       302 ----------------------------------~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~  343 (597)
T 3oja_B          302 ----------------------------------TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST  343 (597)
T ss_dssp             ----------------------------------TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred             ----------------------------------CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhh
Confidence                                              7899999999999 6888899999999999999999854 3  677


Q ss_pred             CCCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCCCC
Q 041562          595 LHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAI  636 (653)
Q Consensus       595 l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~  636 (653)
                      +++|++|++++|++.+..+. ..+..+....+.+++..|+.+
T Consensus       344 ~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          344 HHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             TCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             cCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence            89999999999999876432 356777788899999999874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=313.41  Aligned_cols=322  Identities=20%  Similarity=0.208  Sum_probs=184.0

Q ss_pred             CEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEc
Q 041562          124 KIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRA  203 (653)
Q Consensus       124 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  203 (653)
                      +.++.+++.++ .+|..+   .+++++|++++|.+++..+..+.  .+++|++|++++|.+++..|..|.++++|++|++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L   87 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL   87 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChhhhhCCccCCEEEC
Confidence            46677777776 666543   24566666666666655444332  4556666666666555555555555555555555


Q ss_pred             ccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCccc
Q 041562          204 GFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGS  283 (653)
Q Consensus       204 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  283 (653)
                      ++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus        88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence            55555543333445555555555555555554455555555555555555555555455555555555555555555543


Q ss_pred             CCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcC
Q 041562          284 LPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA  363 (653)
Q Consensus       284 ~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  363 (653)
                      .+..+.++++|+.|++++|.+.+ ++...+..+++|++|++++|.+.+.++.......+|++|++++|.+++..+..+..
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  246 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH  246 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred             ChhHhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence            33344555555555555555542 22234444555555555554444444444333344455555554444332233444


Q ss_pred             CCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCC
Q 041562          364 LKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKL  443 (653)
Q Consensus       364 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l  443 (653)
                                                +++|+.|++++|.+.+..+.     .+..+++|++|++++|++++..|..|..+
T Consensus       247 --------------------------l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  295 (477)
T 2id5_A          247 --------------------------LVYLRFLNLSYNPISTIEGS-----MLHELLRLQEIQLVGGQLAVVEPYAFRGL  295 (477)
T ss_dssp             --------------------------CTTCCEEECCSSCCCEECTT-----SCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred             --------------------------ccccCeeECCCCcCCccChh-----hccccccCCEEECCCCccceECHHHhcCc
Confidence                                      44455555555544433322     12456778888888888887777778888


Q ss_pred             ccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCccc
Q 041562          444 KKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGE  483 (653)
Q Consensus       444 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  483 (653)
                      ++|++|++++|++++..+..|..+++|++|++++|++...
T Consensus       296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            8888888888888876666777788888888888887643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.9e-34  Score=318.53  Aligned_cols=312  Identities=22%  Similarity=0.219  Sum_probs=238.5

Q ss_pred             CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCE
Q 041562          121 NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKT  200 (653)
Q Consensus       121 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  200 (653)
                      ++++.+++++|.+. .+|..++..+++|++|++++|.+++..+..+.  .+++|++|++++|.+++..|..|+++++|++
T Consensus        51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            44555555555555 67777777788888888888888877665543  6788888888888888877777888888888


Q ss_pred             EEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcC
Q 041562          201 FRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSL  280 (653)
Q Consensus       201 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  280 (653)
                      |++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.   .++.+++|+.|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence            88888888855445567888888888888888877777888888888888888888765   356678888888888877


Q ss_pred             cccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchh
Q 041562          281 SGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG  360 (653)
Q Consensus       281 ~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  360 (653)
                      ++     +...++|+.|++++|.+.. ++.   ...++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~-~~~---~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINV-VRG---PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCE-EEC---SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             cc-----ccCCchhheeeccCCcccc-ccc---ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence            64     2344678888888888763 332   123678888888888875  356777888888888888888877888


Q ss_pred             hcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhh
Q 041562          361 IVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWI  440 (653)
Q Consensus       361 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l  440 (653)
                      +..+++|++|++++|.++.++..                                ...+++|+.|+|++|.++ .+|..+
T Consensus       274 ~~~l~~L~~L~Ls~N~l~~l~~~--------------------------------~~~l~~L~~L~Ls~N~l~-~i~~~~  320 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLVALNLY--------------------------------GQPIPTLKVLDLSHNHLL-HVERNQ  320 (597)
T ss_dssp             GTTCSSCCEEECTTSCCCEEECS--------------------------------SSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred             hcCccCCCEEECCCCCCCCCCcc--------------------------------cccCCCCcEEECCCCCCC-ccCccc
Confidence            88888888888888877644321                                124678889999999888 677788


Q ss_pred             cCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCC
Q 041562          441 GKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFP  485 (653)
Q Consensus       441 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  485 (653)
                      ..+++|++|++++|++.+. +  +..+++|++|++++|++.+...
T Consensus       321 ~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          321 PQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             HHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred             ccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence            8899999999999999854 3  6778899999999999876533

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.4e-35  Score=299.85  Aligned_cols=164  Identities=29%  Similarity=0.553  Sum_probs=131.7

Q ss_pred             CCcCEEEccCCcCcccchhhhcCCc-cCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccc
Q 041562          420 KNLQVLGLAECKLKGQVPSWIGKLK-KLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQ  498 (653)
Q Consensus       420 ~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  498 (653)
                      ++|++|++++|++++.+|..+..++ +|++|++++|++.+.+|..+..++ |++|++++|++++..|..+..++      
T Consensus       149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~------  221 (313)
T 1ogq_A          149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK------  221 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS------
T ss_pred             CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC------
Confidence            3444445555555555666666666 777777777777777777777776 88888888888777776665543      


Q ss_pred             ccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEe
Q 041562          499 DKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMD  578 (653)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~Ld  578 (653)
                                                                        .|+.|+|++|.+++.+|. +..+++|++||
T Consensus       222 --------------------------------------------------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~  250 (313)
T 1ogq_A          222 --------------------------------------------------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLD  250 (313)
T ss_dssp             --------------------------------------------------CCSEEECCSSEECCBGGG-CCCCTTCCEEE
T ss_pred             --------------------------------------------------CCCEEECCCCceeeecCc-ccccCCCCEEE
Confidence                                                              677888888888876665 78889999999


Q ss_pred             CCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCCCCCCCCCC
Q 041562          579 LSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCS  642 (653)
Q Consensus       579 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~~~~c~  642 (653)
                      |++|++++.+|..+..+++|++|++++|+++|.+|..+++.++....+.|||++||.|+. .|.
T Consensus       251 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C~  313 (313)
T 1ogq_A          251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT  313 (313)
T ss_dssp             CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred             CcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CCC
Confidence            999999999999999999999999999999999999988999999999999999999874 674

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=8.1e-33  Score=287.15  Aligned_cols=263  Identities=26%  Similarity=0.368  Sum_probs=145.3

Q ss_pred             ccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCc
Q 041562          240 IVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKL  319 (653)
Q Consensus       240 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L  319 (653)
                      +..+++|++|++++|.+++.  +.+..+++|++|++++|.+.+. +. +..+++|++|++++|.....++  .+..+++|
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L  157 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS--PLSNMTGL  157 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG--GGTTCTTC
T ss_pred             hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc--chhhCCCC
Confidence            33344444444444443321  1234444444444444444322 11 3444444444444443332222  24444444


Q ss_pred             CEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECC
Q 041562          320 RVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIP  399 (653)
Q Consensus       320 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~  399 (653)
                      ++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.++.++.                 
T Consensus       158 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-----------------  216 (347)
T 4fmz_A          158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-----------------  216 (347)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-----------------
T ss_pred             cEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-----------------
Confidence            444444444442211  3444445555555544442211  4444555555555554443221                 


Q ss_pred             CCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCc
Q 041562          400 LNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNL  479 (653)
Q Consensus       400 ~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  479 (653)
                                      +..+++|++|++++|.+++..+  +..+++|++|++++|++.+.  ..+..+++|++|++++|+
T Consensus       217 ----------------~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~  276 (347)
T 4fmz_A          217 ----------------VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQ  276 (347)
T ss_dssp             ----------------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             ----------------hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCc
Confidence                            1244566667777776664333  66777777778877777743  357777888888888887


Q ss_pred             CcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCcc
Q 041562          480 ISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNN  559 (653)
Q Consensus       480 l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~  559 (653)
                      +++. + .+..+                                                       + .|+.|++++|.
T Consensus       277 l~~~-~-~~~~l-------------------------------------------------------~-~L~~L~L~~n~  298 (347)
T 4fmz_A          277 ISDI-S-VLNNL-------------------------------------------------------S-QLNSLFLNNNQ  298 (347)
T ss_dssp             CCCC-G-GGGGC-------------------------------------------------------T-TCSEEECCSSC
T ss_pred             cCCC-h-hhcCC-------------------------------------------------------C-CCCEEECcCCc
Confidence            7642 1 12221                                                       1 67888888888


Q ss_pred             CccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCccc
Q 041562          560 FSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR  609 (653)
Q Consensus       560 l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  609 (653)
                      +++..|..++.+++|++|++++|++++..|  +..++.|++|++++|+++
T Consensus       299 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            888888888888888888888888886655  777888888888888775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.5e-32  Score=282.38  Aligned_cols=260  Identities=25%  Similarity=0.360  Sum_probs=135.4

Q ss_pred             CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562          171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  250 (653)
                      +++|++|++++|.++..  ..+..+++|++|++++|.+++. +. +..+++|++|++++|.....+ ..+..+++|++|+
T Consensus        87 l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~  161 (347)
T 4fmz_A           87 LVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLT  161 (347)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEE
T ss_pred             CCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEE
Confidence            44444444444444321  1344444444444444444422 21 444444444444444333222 2244444444444


Q ss_pred             cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562          251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      +++|.+.+..+  +..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.+ ++  .+..+++|++|++++|.++
T Consensus       162 l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~--~~~~~~~L~~L~l~~n~l~  234 (347)
T 4fmz_A          162 VTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITD-IT--PVANMTRLNSLKIGNNKIT  234 (347)
T ss_dssp             CCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCC
T ss_pred             ecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCC-Cc--hhhcCCcCCEEEccCCccC
Confidence            44444443321  44444444454444444422 11 4444444444444444442 11  1334444444444444444


Q ss_pred             ccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCc
Q 041562          331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDN  410 (653)
Q Consensus       331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  410 (653)
                      +..+  +..+++|++|++++|.+++.  +.+..+++|++|++++|.++.++                             
T Consensus       235 ~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-----------------------------  281 (347)
T 4fmz_A          235 DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS-----------------------------  281 (347)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-----------------------------
T ss_pred             CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh-----------------------------
Confidence            2211  34444444444444444421  23444444444444444443221                             


Q ss_pred             ccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCc
Q 041562          411 DRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS  481 (653)
Q Consensus       411 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  481 (653)
                          .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|  +..+++|++|++++|.|+
T Consensus       282 ----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          282 ----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ----GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ----hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence                12356889999999999988888889999999999999999987666  788999999999999875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=4.7e-34  Score=293.14  Aligned_cols=266  Identities=18%  Similarity=0.176  Sum_probs=169.6

Q ss_pred             CCcCCHHhHHHHHHhhhcCCCCC----CCC----CCCCCCccccceEeC---------CCCCEEEEEcCCCCcceecccc
Q 041562           31 CQACNQIDQDSLLSLGFNISSPG----LNW----SSSTDCCLWEGIKCD---------ANGRVSHLWLPWKGLTGTISLS   93 (653)
Q Consensus        31 ~~~~~~~~~~~ll~~k~~~~~~~----~~W----~~~~~~c~w~gv~c~---------~~~~v~~L~L~~~~l~g~~~~~   93 (653)
                      ..++..+|++||++||+++..+.    .+|    ....++|.|.|+.|+         ..++|+.|+|+++.++ .+|+.
T Consensus        21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~   99 (328)
T 4fcg_A           21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ   99 (328)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred             ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence            34556789999999999884333    567    346789999999995         2478999999999998 78888


Q ss_pred             ccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhh----
Q 041562           94 IGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWV----  168 (653)
Q Consensus        94 l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----  168 (653)
                      ++++++|++|+|++|.++ .+|..++. ++|++|+|++|.++ .+|..+ ..+++|++|++++|++.+.+|..+..    
T Consensus       100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~  176 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELPEPLASTDAS  176 (328)
T ss_dssp             GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred             hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEEECCCCCCccccChhHhhccch
Confidence            999999999999999998 78887776 88999999999888 788764 45788888888887777776654421    


Q ss_pred             ---cCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCC
Q 041562          169 ---DSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTS  245 (653)
Q Consensus       169 ---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~  245 (653)
                         ..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..++.+++
T Consensus       177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  254 (328)
T 4fcg_A          177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP  254 (328)
T ss_dssp             CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred             hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence               12445555555555554 44444455555555555555544 23334444445555555554444444444444444


Q ss_pred             CcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCC
Q 041562          246 LRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN  302 (653)
Q Consensus       246 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  302 (653)
                      |++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++++++|+.+++..+
T Consensus       255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            444544444444444444444444444444444444444444444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1.5e-31  Score=275.70  Aligned_cols=294  Identities=21%  Similarity=0.275  Sum_probs=170.5

Q ss_pred             CCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEee
Q 041562          197 RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLH  276 (653)
Q Consensus       197 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  276 (653)
                      +++.++++++.++ .+|..+  .++|++|++++|.+.+..+..+.++++|++|++++|++++..|..|+++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            5666666666665 455544  2466666666666665555566666666666666666665556666666666666666


Q ss_pred             cCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccc--cCCccCcCCCCCCeEEccCcccc
Q 041562          277 NNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG--SLPITLNSCKSLTAVNLARNQLE  354 (653)
Q Consensus       277 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~  354 (653)
                      +|.++ .+|..+.  ++|++|++++|.++ .++...+..+++|++|++++|.++.  ..+..+..+ +|++|++++|.++
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            66665 3444333  55666666666555 3333345555555555555555532  334444444 4555555555444


Q ss_pred             ccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcc
Q 041562          355 GQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG  434 (653)
Q Consensus       355 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  434 (653)
                      + +|..+.  ++|++|+++                          +|.+.+..+.     .+..+++|++|++++|++++
T Consensus       186 ~-l~~~~~--~~L~~L~l~--------------------------~n~i~~~~~~-----~l~~l~~L~~L~L~~N~l~~  231 (332)
T 2ft3_A          186 G-IPKDLP--ETLNELHLD--------------------------HNKIQAIELE-----DLLRYSKLYRLGLGHNQIRM  231 (332)
T ss_dssp             S-CCSSSC--SSCSCCBCC--------------------------SSCCCCCCTT-----SSTTCTTCSCCBCCSSCCCC
T ss_pred             c-cCcccc--CCCCEEECC--------------------------CCcCCccCHH-----HhcCCCCCCEEECCCCcCCc
Confidence            2 222221  334444444                          4433333222     12356777777777777776


Q ss_pred             cchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccccccccccccccccc
Q 041562          435 QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFK  514 (653)
Q Consensus       435 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  514 (653)
                      ..+..+..+++|++|++++|++. .+|..+..+++|++|++++|++++..+..|........                  
T Consensus       232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~------------------  292 (332)
T 2ft3_A          232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK------------------  292 (332)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS------------------
T ss_pred             CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccc------------------
Confidence            66667777777888888888777 66666777777888888888777655555543211000                  


Q ss_pred             CCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCc--cccccccccCCCCCeEeCCCCe
Q 041562          515 GSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFS--GNIPDQISQLTNLERMDLSKNH  583 (653)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~LdLs~N~  583 (653)
                                                     .. .|+.|++++|.+.  +..|..|..+++|+.+++++|+
T Consensus       293 -------------------------------~~-~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          293 -------------------------------RA-YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             -------------------------------SC-CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             -------------------------------cc-cccceEeecCcccccccCcccccccchhhhhhccccc
Confidence                                           00 5677777777776  5566777777777777777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=4.7e-31  Score=271.72  Aligned_cols=253  Identities=25%  Similarity=0.342  Sum_probs=141.5

Q ss_pred             CCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEee
Q 041562          197 RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLH  276 (653)
Q Consensus       197 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  276 (653)
                      +++.++++++.++ .+|..+.  +.+++|++++|.+++..+..+.++++|++|++++|++++..|..++.+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            5666666666665 4454432  456666666666665555556666666666666666665555566666666666666


Q ss_pred             cCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccccc
Q 041562          277 NNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQ  356 (653)
Q Consensus       277 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  356 (653)
                      +|.++ .+|..+.  ++|++|++++|.++ .++...+..+++|++|++++|.+..                      .+.
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~  162 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKS----------------------SGI  162 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCG----------------------GGB
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCc----------------------cCc
Confidence            66655 3443332  45555555555555 2333344555555555555555432                      113


Q ss_pred             CchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccc
Q 041562          357 ISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQV  436 (653)
Q Consensus       357 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  436 (653)
                      .+..+..+++|++|++++|.++.++..+     .++|++|++++|.+.+..+..     +..+++|++|++++|.+++..
T Consensus       163 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~-----~~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~  232 (330)
T 1xku_A          163 ENGAFQGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDGNKITKVDAAS-----LKGLNNLAKLGLSFNSISAVD  232 (330)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCSCCSSC-----CTTCSEEECTTSCCCEECTGG-----GTTCTTCCEEECCSSCCCEEC
T ss_pred             ChhhccCCCCcCEEECCCCccccCCccc-----cccCCEEECCCCcCCccCHHH-----hcCCCCCCEEECCCCcCceeC
Confidence            3344444555555555555554433211     133444444444443332221     235566777777777777655


Q ss_pred             hhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCcccc
Q 041562          437 PSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFC  489 (653)
Q Consensus       437 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  489 (653)
                      +..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.
T Consensus       233 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             TTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             hhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence            656667777777777777776 5666667777777777777777655444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=9.1e-31  Score=269.80  Aligned_cols=201  Identities=21%  Similarity=0.231  Sum_probs=105.1

Q ss_pred             CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcc
Q 041562          173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY  252 (653)
Q Consensus       173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  252 (653)
                      +|++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+.  ++|++|+++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH  131 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence            4444555555444444444555555555555555555444455555555555555555554 3333332  455555555


Q ss_pred             cCcCCcccCccccCCCCCCeEEeecCcCc--ccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562          253 SNSLTGLIPRDIGKLTNLESLVLHNNSLS--GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       253 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      +|++++..+..++.+++|++|++++|.++  +..+..+..+ +|++|++++|.+++ +|. .+  .++|++|++++|.++
T Consensus       132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~-~~--~~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPK-DL--PETLNELHLDHNKIQ  206 (332)
T ss_dssp             SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCS-SS--CSSCSCCBCCSSCCC
T ss_pred             CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCc-cc--cCCCCEEECCCCcCC
Confidence            55555444444555555555555555553  2344444444 55555555555552 332 11  145556666666665


Q ss_pred             ccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCC
Q 041562          331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNIT  381 (653)
Q Consensus       331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  381 (653)
                      +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++.++
T Consensus       207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp  257 (332)
T 2ft3_A          207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP  257 (332)
T ss_dssp             CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC
Confidence            555555555666666666666665555555555666666666666555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.1e-34  Score=311.16  Aligned_cols=339  Identities=20%  Similarity=0.135  Sum_probs=184.5

Q ss_pred             cCCCCcEEEccCCcCcccCChhhhhcCCC----CCCEEEccCCcCcc----CCCccCCCCCCCCEEEcccCCCCCCcccc
Q 041562          144 LTQNLITFNVSNNSFTGLISWSAWVDSFC----SIRHLDLSNNRFTG----PVPLGLGSCSRLKTFRAGFNYLTGSLPDD  215 (653)
Q Consensus       144 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~----~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  215 (653)
                      .+++|++|++++|.+.+..+..+.. .++    +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..
T Consensus        54 ~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  132 (461)
T 1z7x_W           54 VNPALAELNLRSNELGDVGVHCVLQ-GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL  132 (461)
T ss_dssp             TCTTCCEEECTTCCCHHHHHHHHHH-TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred             hCCCcCEEeCCCCcCChHHHHHHHH-HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence            3455555555555554432222211 222    46666666666553    33555666666666666666665433322


Q ss_pred             cc-----CCCCCCEEeccCCcCccc----ccccccCCCCCcEEEcccCcCCcccCcccc-----CCCCCCeEEeecCcCc
Q 041562          216 IY-----TATSLEQLSLSFNHISGS----IKNGIVNLTSLRILELYSNSLTGLIPRDIG-----KLTNLESLVLHNNSLS  281 (653)
Q Consensus       216 l~-----~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~  281 (653)
                      +.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.++
T Consensus       133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  212 (461)
T 1z7x_W          133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT  212 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred             HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence            22     244567777777666643    244455566777777777766544333332     2456777777777666


Q ss_pred             cc----CCccccCCCCCcEEEccCCcCcccc----ChhhccCCCCcCEEEccCCccccc----CCccCcCCCCCCeEEcc
Q 041562          282 GS----LPSSLKNCINLTLLNLQSNFFEGDI----SVFNFSTLLKLRVLDLGSNLFTGS----LPITLNSCKSLTAVNLA  349 (653)
Q Consensus       282 ~~----~p~~l~~l~~L~~L~L~~n~l~~~i----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~  349 (653)
                      +.    ++..+..+++|++|++++|.+++..    ....+..+++|++|++++|.+++.    ++..+..+++|++|+++
T Consensus       213 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls  292 (461)
T 1z7x_W          213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA  292 (461)
T ss_dssp             TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECC
Confidence            42    3455566677777777777665321    111223466777777777776643    45555566777777777


Q ss_pred             CccccccCchhhcC-----CCCCCEEECCCCCCCCCCc--chhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCc
Q 041562          350 RNQLEGQISPGIVA-----LKSLSFLSLSNNSLTNITG--AIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNL  422 (653)
Q Consensus       350 ~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~l~~~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L  422 (653)
                      +|.+.+..+..+..     .++|++|++++|.++....  ....+..+++|+.|++++|.+.+..+...........++|
T Consensus       293 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L  372 (461)
T 1z7x_W          293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL  372 (461)
T ss_dssp             TCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred             CCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCce
Confidence            77765443333322     2567777777776653211  1123444556666666666554332211110000114567


Q ss_pred             CEEEccCCcCcc----cchhhhcCCccCCeeeCcCCcCccCCchhhc-----CCCCCCEEEccCCcCccc
Q 041562          423 QVLGLAECKLKG----QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLG-----NMSSLFHIDFSNNLISGE  483 (653)
Q Consensus       423 ~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~  483 (653)
                      ++|++++|.+++    .+|..+..+++|++|++++|++++.....+.     ....|+.|++.++.+...
T Consensus       373 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~  442 (461)
T 1z7x_W          373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  442 (461)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             EEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence            777777777764    5666666677777777777776643222211     233566676666665543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.8e-30  Score=264.98  Aligned_cols=245  Identities=20%  Similarity=0.287  Sum_probs=136.0

Q ss_pred             CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCE
Q 041562          121 NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKT  200 (653)
Q Consensus       121 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  200 (653)
                      .++++++++++.++ .+|..+   .+++++|++++|.+++..+..+.  .+++|++|++++|.+++..|..+..+++|++
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLER  104 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhc--cCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence            46777777777776 666543   35666777777766665543332  4666666666666666555666666666666


Q ss_pred             EEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCc--ccCccccCCCCCCeEEeecC
Q 041562          201 FRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTG--LIPRDIGKLTNLESLVLHNN  278 (653)
Q Consensus       201 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n  278 (653)
                      |++++|.++ .+|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+..  ..+..+..+++|++|++++|
T Consensus       105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  181 (330)
T 1xku_A          105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  181 (330)
T ss_dssp             EECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             EECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence            666666665 3444432  556666666666665555555666666666666665542  34445555555555555555


Q ss_pred             cCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCc
Q 041562          279 SLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQIS  358 (653)
Q Consensus       279 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  358 (653)
                      .++ .+|..+.  ++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|
T Consensus       182 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp  256 (330)
T 1xku_A          182 NIT-TIPQGLP--PSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP  256 (330)
T ss_dssp             CCC-SCCSSCC--TTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCC
T ss_pred             ccc-cCCcccc--ccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCC
Confidence            555 2333332  455555555555543222 24455555555555555555444444445555555555555554 344


Q ss_pred             hhhcCCCCCCEEECCCCCCCC
Q 041562          359 PGIVALKSLSFLSLSNNSLTN  379 (653)
Q Consensus       359 ~~l~~l~~L~~L~Ls~n~l~~  379 (653)
                      ..+..+++|++|++++|+++.
T Consensus       257 ~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          257 GGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             TTTTTCSSCCEEECCSSCCCC
T ss_pred             hhhccCCCcCEEECCCCcCCc
Confidence            444444455555555554443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.8e-34  Score=310.23  Aligned_cols=305  Identities=19%  Similarity=0.173  Sum_probs=174.2

Q ss_pred             CCCCEEEccCCcCccCCCcc-CCCCCCCCEEEcccCCCCC----CccccccCCCCCCEEeccCCcCccccccccc-CCC-
Q 041562          172 CSIRHLDLSNNRFTGPVPLG-LGSCSRLKTFRAGFNYLTG----SLPDDIYTATSLEQLSLSFNHISGSIKNGIV-NLT-  244 (653)
Q Consensus       172 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~-  244 (653)
                      ++|++|++++|+++...... +..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..+. .++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            46788888888876543332 6677888888888888774    3456667778888888888887654443332 344 


Q ss_pred             ---CCcEEEcccCcCCc----ccCccccCCCCCCeEEeecCcCcccCCcccc-----CCCCCcEEEccCCcCccccC---
Q 041562          245 ---SLRILELYSNSLTG----LIPRDIGKLTNLESLVLHNNSLSGSLPSSLK-----NCINLTLLNLQSNFFEGDIS---  309 (653)
Q Consensus       245 ---~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~i~---  309 (653)
                         +|++|++++|+++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++...   
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               58888888887774    3466677777888888888777643333222     24567777777777764221   


Q ss_pred             hhhccCCCCcCEEEccCCcccccCCccCc-----CCCCCCeEEccCcccccc----CchhhcCCCCCCEEECCCCCCCCC
Q 041562          310 VFNFSTLLKLRVLDLGSNLFTGSLPITLN-----SCKSLTAVNLARNQLEGQ----ISPGIVALKSLSFLSLSNNSLTNI  380 (653)
Q Consensus       310 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~  380 (653)
                      ...+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.++..
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            12345567777777777776644333332     245677777777777653    355556667777777777766532


Q ss_pred             Ccc-h-h-hccCCCCCcEEECCCCCCCcc----CCCcccccCCCCCCCcCEEEccCCcCcccchhhhcC-----CccCCe
Q 041562          381 TGA-I-R-ILMGCKNLKVLIIPLNFMDET----MPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGK-----LKKLQV  448 (653)
Q Consensus       381 ~~~-~-~-~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~  448 (653)
                      ... + . ....+++|+.|++++|.+++.    ++.     .+..+++|++|++++|.+++..+..+..     .++|++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~  317 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR-----VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES  317 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-----HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH-----HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence            100 0 1 112345555555555544432    111     0112345555555555554333222221     135555


Q ss_pred             eeCcCCcCccC----CchhhcCCCCCCEEEccCCcCc
Q 041562          449 LDLSFNQLTGS----VPRFLGNMSSLFHIDFSNNLIS  481 (653)
Q Consensus       449 L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~  481 (653)
                      |++++|++++.    ++..+..+++|++|++++|+++
T Consensus       318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence            55555555433    2333444455555555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=1.2e-33  Score=315.42  Aligned_cols=455  Identities=14%  Similarity=0.069  Sum_probs=244.0

Q ss_pred             CCCccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCC---CCCCCcccc------------C-CCc
Q 041562           60 TDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRL---SGEFPSSLS------------S-NYI  123 (653)
Q Consensus        60 ~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~---~~~~p~~~~------------~-~~L  123 (653)
                      .-|++|.++.+....+   +.+.. ......+..+.++++|++|+|+++..   .+.+|..++            . ++|
T Consensus        39 ~vck~W~~~~~~~~~~---l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L  114 (592)
T 3ogk_B           39 LVCRRWFKIDSETREH---VTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL  114 (592)
T ss_dssp             TSCHHHHHHHHHHCCE---EEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred             HHhHHHHHhhhccccE---EEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence            3456899886532222   22222 12333445667889999999988542   123333222            1 677


Q ss_pred             CEEEccCCCCCCCCchHHHhcCCC-CcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccC----CCccCCCCCCC
Q 041562          124 KIIDLSSNHFQGKIPSTIFRLTQN-LITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGP----VPLGLGSCSRL  198 (653)
Q Consensus       124 ~~L~Ls~n~l~~~ip~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L  198 (653)
                      ++|+|++|.+++..+..+...+++ |++|++++|.-............+++|++|++++|.+++.    ++..+..+++|
T Consensus       115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L  194 (592)
T 3ogk_B          115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL  194 (592)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred             CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence            888888777765555555443444 7777777765211111111122567777777777776544    22234456677


Q ss_pred             CEEEcccCCCC----CCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCC---cccCccccCCCCCC
Q 041562          199 KTFRAGFNYLT----GSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLT---GLIPRDIGKLTNLE  271 (653)
Q Consensus       199 ~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~  271 (653)
                      ++|++++|.++    +.++..+..+++|++|++++|.+.+ ++..+..+++|++|+++.....   +..+..+..+++|+
T Consensus       195 ~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~  273 (592)
T 3ogk_B          195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC  273 (592)
T ss_dssp             CEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC
T ss_pred             cEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccc
Confidence            77777777665    2334444566677777777766663 5566666677777776643222   22233455566666


Q ss_pred             eEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccC-
Q 041562          272 SLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLAR-  350 (653)
Q Consensus       272 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-  350 (653)
                      .|+++++.. +.+|..+..+++|++|++++|.+++......+..+++|++|+++++...+.++.....+++|++|++++ 
T Consensus       274 ~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g  352 (592)
T 3ogk_B          274 RLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG  352 (592)
T ss_dssp             EEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred             ccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecC
Confidence            666665432 245555556666666666666654332222345566666666662222222233334455566666652 


Q ss_pred             ----------ccccccCch-hhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCC
Q 041562          351 ----------NQLEGQISP-GIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGF  419 (653)
Q Consensus       351 ----------n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  419 (653)
                                +.+++.... ....+++|++|+++.+.++                          +..+....    ..+
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~--------------------------~~~~~~l~----~~~  402 (592)
T 3ogk_B          353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT--------------------------NESLESIG----TYL  402 (592)
T ss_dssp             CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC--------------------------HHHHHHHH----HHC
T ss_pred             ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc--------------------------HHHHHHHH----hhC
Confidence                      334322111 1233455555555444443                          22111110    124


Q ss_pred             CCcCEEEcc----CCcCccc-----chhhhcCCccCCeeeCcCCc--CccCCchhhc-CCCCCCEEEccCCcCcccC-Cc
Q 041562          420 KNLQVLGLA----ECKLKGQ-----VPSWIGKLKKLQVLDLSFNQ--LTGSVPRFLG-NMSSLFHIDFSNNLISGEF-PK  486 (653)
Q Consensus       420 ~~L~~L~L~----~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~-p~  486 (653)
                      ++|++|+++    .|.+++.     ++..+..+++|++|++++|.  +++..+..+. .+++|++|++++|++++.. +.
T Consensus       403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  482 (592)
T 3ogk_B          403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME  482 (592)
T ss_dssp             CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred             CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence            556666664    4455542     44445667777777776543  5544444443 3677777777777765421 11


Q ss_pred             cccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccc-cc
Q 041562          487 EFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGN-IP  565 (653)
Q Consensus       487 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~-~p  565 (653)
                      .+..+                                                       + +|++|+|++|.+++. ++
T Consensus       483 ~~~~~-------------------------------------------------------~-~L~~L~l~~n~l~~~~~~  506 (592)
T 3ogk_B          483 FSRGC-------------------------------------------------------P-NLQKLEMRGCCFSERAIA  506 (592)
T ss_dssp             HHTCC-------------------------------------------------------T-TCCEEEEESCCCBHHHHH
T ss_pred             HHhcC-------------------------------------------------------c-ccCeeeccCCCCcHHHHH
Confidence            11221                                                       1 577777777776654 34


Q ss_pred             cccccCCCCCeEeCCCCeeeeecCccc-ccCCCCCeeecCCC
Q 041562          566 DQISQLTNLERMDLSKNHLSGEIPVSL-KRLHFLSAFNVAEN  606 (653)
Q Consensus       566 ~~l~~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L~~L~ls~N  606 (653)
                      ..+..+++|++|+|++|++++.-...+ ..++.+....+..+
T Consensus       507 ~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             HHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            444567777777777777765433323 24555555544443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=4.2e-29  Score=259.66  Aligned_cols=286  Identities=19%  Similarity=0.199  Sum_probs=202.9

Q ss_pred             CCCCCCCCccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCC
Q 041562           55 NWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHF  133 (653)
Q Consensus        55 ~W~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l  133 (653)
                      .|.....+|.|.|+ |+         .++++++ .+|..+.  ++|++|++++|.+++..+..+.. ++|++|++++|.+
T Consensus        22 ~~~~~~~~C~~~~~-c~---------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   88 (353)
T 2z80_A           22 SSNQASLSCDRNGI-CK---------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI   88 (353)
T ss_dssp             -----CCEECTTSE-EE---------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCccCCCCCCCeE-ee---------CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence            35445677999988 75         2344444 3454443  47788888888877655555655 7788888888877


Q ss_pred             CCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCC-ccCCCCCCCCEEEcccC-CCCCC
Q 041562          134 QGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP-LGLGSCSRLKTFRAGFN-YLTGS  211 (653)
Q Consensus       134 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~  211 (653)
                      + .++...+..+++|++|++++|.+++..+..+.  .+++|++|++++|.+++..+ ..+..+++|++|++++| .+.+.
T Consensus        89 ~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~  165 (353)
T 2z80_A           89 N-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK--PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI  165 (353)
T ss_dssp             C-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHT--TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             C-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC--CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc
Confidence            7 34444455678888888888887765543332  57788888888888874333 36788888888888887 45555


Q ss_pred             ccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccc---
Q 041562          212 LPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL---  288 (653)
Q Consensus       212 ~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---  288 (653)
                      .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++....+..+..+++|++|++++|.+++..+..+   
T Consensus       166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  245 (353)
T 2z80_A          166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG  245 (353)
T ss_dssp             CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred             CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc
Confidence            56677888888888888888887778888888888888888888864433334567888888888888876554433   


Q ss_pred             cCCCCCcEEEccCCcCcc----ccChhhccCCCCcCEEEccCCcccccCCcc-CcCCCCCCeEEccCccccccCc
Q 041562          289 KNCINLTLLNLQSNFFEG----DISVFNFSTLLKLRVLDLGSNLFTGSLPIT-LNSCKSLTAVNLARNQLEGQIS  358 (653)
Q Consensus       289 ~~l~~L~~L~L~~n~l~~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~  358 (653)
                      .....++.++++++.+.+    .+|. .+..+++|++|++++|.++ .+|.. +..+++|++|++++|.+.+..|
T Consensus       246 ~~~~~l~~l~L~~~~l~~~~l~~l~~-~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          246 ETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             -CCCCCCEEEEESCBCCHHHHHHHHH-HHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccchhhccccccccccCcchhhhHH-HHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            245678888888887765    2442 5778899999999999998 45555 5889999999999999887654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=3.3e-29  Score=255.09  Aligned_cols=283  Identities=19%  Similarity=0.201  Sum_probs=215.7

Q ss_pred             ccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCC--CCch
Q 041562           63 CLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQG--KIPS  139 (653)
Q Consensus        63 c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~--~ip~  139 (653)
                      |.|.+|.|+..+           ++ .+|..+.  ++|++|+|++|.++...+..+.. ++|++|+|++|.++.  .+|.
T Consensus         7 C~~~~l~c~~~~-----------l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   72 (306)
T 2z66_A            7 CSGTEIRCNSKG-----------LT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ   72 (306)
T ss_dssp             EETTEEECCSSC-----------CS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH
T ss_pred             eCCCEEEcCCCC-----------cc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc
Confidence            789999997422           22 3343332  57888999988888544444555 889999999888872  2255


Q ss_pred             HHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCC-ccCCCCCCCCEEEcccCCCCCCccccccC
Q 041562          140 TIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP-LGLGSCSRLKTFRAGFNYLTGSLPDDIYT  218 (653)
Q Consensus       140 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  218 (653)
                      .+. .+++|++|++++|.+++..+.   ...+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus        73 ~~~-~~~~L~~L~Ls~n~i~~l~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  148 (306)
T 2z66_A           73 SDF-GTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG  148 (306)
T ss_dssp             HHH-SCSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred             ccc-cccccCEEECCCCccccChhh---cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence            544 488999999999988764332   2368899999999998886554 57888999999999999998888888888


Q ss_pred             CCCCCEEeccCCcCcc-cccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEE
Q 041562          219 ATSLEQLSLSFNHISG-SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLL  297 (653)
Q Consensus       219 l~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  297 (653)
                      +++|++|++++|.+.+ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  228 (306)
T 2z66_A          149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  228 (306)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred             CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence            9999999999998876 578888999999999999999998878888899999999999999987777778889999999


Q ss_pred             EccCCcCccccChhhccCCC-CcCEEEccCCcccccCCc--cCcCCCCCCeEEccCccccccCchhhcCC
Q 041562          298 NLQSNFFEGDISVFNFSTLL-KLRVLDLGSNLFTGSLPI--TLNSCKSLTAVNLARNQLEGQISPGIVAL  364 (653)
Q Consensus       298 ~L~~n~l~~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  364 (653)
                      ++++|.+++..+. .+..++ +|++|++++|.+++....  ....+...+.+....+.+....|..+...
T Consensus       229 ~L~~N~l~~~~~~-~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~  297 (306)
T 2z66_A          229 DYSLNHIMTSKKQ-ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM  297 (306)
T ss_dssp             ECTTSCCCBCSSS-SCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred             ECCCCCCcccCHH-HHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence            9999999876663 677774 899999999988754221  11112344455666677777777766543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=5e-31  Score=294.09  Aligned_cols=329  Identities=17%  Similarity=0.130  Sum_probs=187.1

Q ss_pred             CCCCCCEEeccCCcCccc----ccccccCCCCCcEEEcccCcCCc----ccCccccCCCCCCeEEeecCcCcccCCcccc
Q 041562          218 TATSLEQLSLSFNHISGS----IKNGIVNLTSLRILELYSNSLTG----LIPRDIGKLTNLESLVLHNNSLSGSLPSSLK  289 (653)
Q Consensus       218 ~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  289 (653)
                      .+++|++|+|++|.+.+.    ++..+..+++|++|++++|.+++    .++..+.++++|++|++++|.+.+ +|..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            344455555555444332    22223344455555555554441    122223344555555555554442 334444


Q ss_pred             CCCCCcEEEccCCcCc---cccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCc-hhhcCCC
Q 041562          290 NCINLTLLNLQSNFFE---GDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQIS-PGIVALK  365 (653)
Q Consensus       290 ~l~~L~~L~L~~n~l~---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~  365 (653)
                      .+++|++|+++.....   +... ..+..+++|+.|+++++... .+|..+..+++|++|++++|.+++... ..+..++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~  318 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKY-MNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP  318 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSS-SCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred             hhhHHHhhcccccccccchHHHH-HHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence            4555555555432111   0111 13344455555555543222 344444555555555555555443322 2234555


Q ss_pred             CCCEEECCCCCCCCCCcch-hhccCCCCCcEEECCC-----------CCCCccCCCcccccCCCCCCCcCEEEccCCcCc
Q 041562          366 SLSFLSLSNNSLTNITGAI-RILMGCKNLKVLIIPL-----------NFMDETMPDNDRLTSANGFKNLQVLGLAECKLK  433 (653)
Q Consensus       366 ~L~~L~Ls~n~l~~~~~~~-~~l~~l~~L~~L~l~~-----------n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~  433 (653)
                      +|++|+++ +.+..  ..+ .....+++|++|+++.           +.+++....    .....+++|++|+++.+.++
T Consensus       319 ~L~~L~L~-~~~~~--~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~----~l~~~~~~L~~L~l~~~~l~  391 (592)
T 3ogk_B          319 NLEVLETR-NVIGD--RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI----ALAQGCQELEYMAVYVSDIT  391 (592)
T ss_dssp             TCCEEEEE-GGGHH--HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH----HHHHHCTTCSEEEEEESCCC
T ss_pred             CCCEEecc-CccCH--HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH----HHHhhCccCeEEEeecCCcc
Confidence            55555555 22211  111 1223455566666652           233221100    00124789999999999999


Q ss_pred             ccchhhhcC-CccCCeeeCc----CCcCccC-----CchhhcCCCCCCEEEccCCc--CcccCCccccCCCCCCcccccc
Q 041562          434 GQVPSWIGK-LKKLQVLDLS----FNQLTGS-----VPRFLGNMSSLFHIDFSNNL--ISGEFPKEFCRLPALTPEQDKN  501 (653)
Q Consensus       434 ~~~p~~l~~-l~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~l~~~~  501 (653)
                      +..+..+.. +++|+.|+++    .|++++.     ++..+..+++|++|++++|.  +++..+..+..           
T Consensus       392 ~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~-----------  460 (592)
T 3ogk_B          392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ-----------  460 (592)
T ss_dssp             HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH-----------
T ss_pred             HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH-----------
Confidence            887777776 9999999996    6677763     44457789999999998654  54332222211           


Q ss_pred             cccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCcc-ccccccccCCCCCeEeCC
Q 041562          502 KANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSG-NIPDQISQLTNLERMDLS  580 (653)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~LdLs  580 (653)
                                                                 .++ .|+.|+|++|.+++ .++..+..+++|++|+|+
T Consensus       461 -------------------------------------------~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  496 (592)
T 3ogk_B          461 -------------------------------------------YSP-NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR  496 (592)
T ss_dssp             -------------------------------------------SCT-TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred             -------------------------------------------hCc-cceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence                                                       122 79999999999987 356667889999999999


Q ss_pred             CCeeeee-cCcccccCCCCCeeecCCCccccc
Q 041562          581 KNHLSGE-IPVSLKRLHFLSAFNVAENNLRGS  611 (653)
Q Consensus       581 ~N~l~~~-ip~~l~~l~~L~~L~ls~N~l~g~  611 (653)
                      +|.+++. ++.....+++|++|++++|++++.
T Consensus       497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             SCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            9998765 444456799999999999998754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.7e-28  Score=254.98  Aligned_cols=283  Identities=21%  Similarity=0.191  Sum_probs=180.0

Q ss_pred             CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562          171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  250 (653)
                      ++.....+++++.++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|+
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            334444555555555 3444333  3566666666666644444566666666666666666655555666666666666


Q ss_pred             cccCcCCcccCccccCCCCCCeEEeecCcCcccCC-ccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562          251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLP-SSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF  329 (653)
Q Consensus       251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l  329 (653)
                      +++|++++..+..++.+++|++|++++|++++..+ ..+..+++|++|++++|...+.++...+..+++|++|++++|.+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            66666665433346666666666666666663222 25666666666666666322244334566677777777777777


Q ss_pred             cccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCC
Q 041562          330 TGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPD  409 (653)
Q Consensus       330 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  409 (653)
                      ++..|..+..+++|++|++++|.+.......+..+++|++|++++|.++.++..                          
T Consensus       187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------------------  240 (353)
T 2z80_A          187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS--------------------------  240 (353)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------
T ss_pred             CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc--------------------------
Confidence            766667777777777777777776543333344567777777777776643210                          


Q ss_pred             cccccCCCCCCCcCEEEccCCcCcc----cchhhhcCCccCCeeeCcCCcCccCCchh-hcCCCCCCEEEccCCcCcccC
Q 041562          410 NDRLTSANGFKNLQVLGLAECKLKG----QVPSWIGKLKKLQVLDLSFNQLTGSVPRF-LGNMSSLFHIDFSNNLISGEF  484 (653)
Q Consensus       410 ~~~~~~~~~~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~  484 (653)
                      ..  ........++.++++++.+.+    .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++..
T Consensus       241 ~l--~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          241 EL--STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             --------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cc--ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            00  001234567788888888775    47888999999999999999999 45554 689999999999999998765


Q ss_pred             C
Q 041562          485 P  485 (653)
Q Consensus       485 p  485 (653)
                      |
T Consensus       318 ~  318 (353)
T 2z80_A          318 P  318 (353)
T ss_dssp             H
T ss_pred             C
Confidence            4

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.3e-27  Score=243.23  Aligned_cols=247  Identities=23%  Similarity=0.315  Sum_probs=156.0

Q ss_pred             CEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccC--ChhhhhcCCCCCCEEE
Q 041562          101 SHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLI--SWSAWVDSFCSIRHLD  178 (653)
Q Consensus       101 ~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~l~~L~~L~  178 (653)
                      +.++.+++.++ .+|..+. ++|++|+|++|+++ .+|..++..+++|++|++++|.++...  +..+.  .+++|++|+
T Consensus        10 ~~l~c~~~~l~-~ip~~~~-~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP-SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF--GTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC-TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH--SCSCCCEEE
T ss_pred             CEEEcCCCCcc-cCCCCCC-CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccc--cccccCEEE
Confidence            56788888877 4554333 67888888888888 788777777888888888888877432  33332  577788888


Q ss_pred             ccCCcCccCCCccCCCCCCCCEEEcccCCCCCCcc-ccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCC
Q 041562          179 LSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP-DDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLT  257 (653)
Q Consensus       179 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  257 (653)
                      +++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus        85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            8777776 345556666777777777666664333 35566666666666666666555566666666666666666665


Q ss_pred             c-ccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCcc
Q 041562          258 G-LIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPIT  336 (653)
Q Consensus       258 ~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~  336 (653)
                      + ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ++...+..+++|++|++++|.+++..+..
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcccCHHH
Confidence            4 345556666666666666666665555556666666666666666553 22234555555555555555555555555


Q ss_pred             CcCCC-CCCeEEccCcccc
Q 041562          337 LNSCK-SLTAVNLARNQLE  354 (653)
Q Consensus       337 l~~l~-~L~~L~L~~n~l~  354 (653)
                      +..++ +|++|++++|.++
T Consensus       243 ~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCCCCTTCCEEECTTCCEE
T ss_pred             HHhhhccCCEEEccCCCee
Confidence            55542 5555555555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2.8e-27  Score=242.66  Aligned_cols=235  Identities=19%  Similarity=0.238  Sum_probs=156.0

Q ss_pred             CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCE
Q 041562          121 NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKT  200 (653)
Q Consensus       121 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  200 (653)
                      .++++|+|++|.++ .+|..++. +++|++|++++|.++ .+|..+.  .+++|++|++++|.++ .+|..+.++++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~--~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQ--QFAGLETLTLARNPLR-ALPASIASLNRLRE  154 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGG--GGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred             cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHh--ccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence            56777777777776 66665544 566666666666555 3333322  3555555555555555 44555555555555


Q ss_pred             EEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcC
Q 041562          201 FRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSL  280 (653)
Q Consensus       201 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  280 (653)
                      |++++|.+.+.+|..+...               ..+..+.++++|++|++++|+++ .+|..++.+++|++|++++|.+
T Consensus       155 L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l  218 (328)
T 4fcg_A          155 LSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL  218 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred             EECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence            5555554444444433220               01112334777777777777777 5677777777888888888877


Q ss_pred             cccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchh
Q 041562          281 SGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG  360 (653)
Q Consensus       281 ~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  360 (653)
                      + .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..
T Consensus       219 ~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          219 S-ALGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             C-CCCGGGGGCTTCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred             C-cCchhhccCCCCCEEECcCCcchhhhHH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence            7 3556677778888888888777777664 6777788888888888777778877888888888888888888888888


Q ss_pred             hcCCCCCCEEECCCCCCCC
Q 041562          361 IVALKSLSFLSLSNNSLTN  379 (653)
Q Consensus       361 l~~l~~L~~L~Ls~n~l~~  379 (653)
                      ++.+++|+.+++..+.+..
T Consensus       297 l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          297 IAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             GGGSCTTCEEECCGGGSCC
T ss_pred             HhhccCceEEeCCHHHHHH
Confidence            8888888888887766543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=7.4e-27  Score=235.07  Aligned_cols=206  Identities=24%  Similarity=0.247  Sum_probs=132.8

Q ss_pred             CCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCc-CcccccccccCCCCCcEEE
Q 041562          172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH-ISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       172 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~  250 (653)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            345555555555555444555666666666666666665555566666666666666665 5544456666666666666


Q ss_pred             cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562          251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      +++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCccc
Confidence            6666666665666666677777777777666555555666677777777777666 344335666777777777777777


Q ss_pred             ccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562          331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT  378 (653)
Q Consensus       331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  378 (653)
                      +..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            666667777777777777777777655555666777777777777655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=1.3e-30  Score=290.94  Aligned_cols=460  Identities=17%  Similarity=0.121  Sum_probs=245.8

Q ss_pred             CCccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCC---CCCccc-------------cCCCcC
Q 041562           61 DCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSG---EFPSSL-------------SSNYIK  124 (653)
Q Consensus        61 ~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~---~~p~~~-------------~~~~L~  124 (653)
                      -|++|.++...   ....+++...... .....+.++++|++|+++++....   ..|..+             ..++|+
T Consensus        33 vck~W~~~~~~---~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~  108 (594)
T 2p1m_B           33 VCKSWYEIERW---CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE  108 (594)
T ss_dssp             SCHHHHHHHHH---HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHhhhh---hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCC
Confidence            45678877321   2334555443221 112346778999999999876321   122111             117888


Q ss_pred             EEEccCCCCCCCCchHHHhcCCCCcEEEccCC-cCcccCChhhhhcCCCCCCEEEccCCcCccCCCcc----CCCCCCCC
Q 041562          125 IIDLSSNHFQGKIPSTIFRLTQNLITFNVSNN-SFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLG----LGSCSRLK  199 (653)
Q Consensus       125 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~  199 (653)
                      +|+|++|.+++..+..+...+++|++|++++| .++......+ ...+++|++|++++|.+++..+..    ...+++|+
T Consensus       109 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~  187 (594)
T 2p1m_B          109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI-AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV  187 (594)
T ss_dssp             EEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHH-HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred             eEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH-HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence            88888888877666666656888888888888 4433211112 225788888888888876543333    23566777


Q ss_pred             EEEcccCC--CCCC-ccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCc-------CCcccCccccCCCC
Q 041562          200 TFRAGFNY--LTGS-LPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNS-------LTGLIPRDIGKLTN  269 (653)
Q Consensus       200 ~L~L~~n~--l~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~p~~l~~l~~  269 (653)
                      +|++++|.  +... ++..+..+++|++|++++|...+.++..+..+++|++|+++.+.       +.+ ++..+.++++
T Consensus       188 ~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~  266 (594)
T 2p1m_B          188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKE  266 (594)
T ss_dssp             EEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTT
T ss_pred             EEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCC
Confidence            88777775  2211 11222345777777777773222366666677777777755442       222 2234556666


Q ss_pred             CCeE-EeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccccc-CCccCcCCCCCCeEE
Q 041562          270 LESL-VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGS-LPITLNSCKSLTAVN  347 (653)
Q Consensus       270 L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~  347 (653)
                      |+.| .+.+... +.++..+..+++|++|++++|.+++......+..+++|++|++++| +... ++.....+++|++|+
T Consensus       267 L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~  344 (594)
T 2p1m_B          267 LRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR  344 (594)
T ss_dssp             CCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred             cccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence            6666 2322221 2333333445566666666665443222222345555666665555 2211 111122345555555


Q ss_pred             ccC---------ccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCC
Q 041562          348 LAR---------NQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANG  418 (653)
Q Consensus       348 L~~---------n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  418 (653)
                      +++         +.+++.....+.                         ..+++|+.|.+..+.+++.......    ..
T Consensus       345 L~~~~~~g~~~~~~l~~~~l~~l~-------------------------~~~~~L~~L~~~~~~l~~~~~~~l~----~~  395 (594)
T 2p1m_B          345 VFPSEPFVMEPNVALTEQGLVSVS-------------------------MGCPKLESVLYFCRQMTNAALITIA----RN  395 (594)
T ss_dssp             EECSCTTCSSCSSCCCHHHHHHHH-------------------------HHCTTCCEEEEEESCCCHHHHHHHH----HH
T ss_pred             EecCcccccccCCCCCHHHHHHHH-------------------------HhchhHHHHHHhcCCcCHHHHHHHH----hh
Confidence            522         222222111111                         1234444444433333322111000    12


Q ss_pred             CCCcCEEEcc--C----CcCcc-----cchhhhcCCccCCeeeCcCCcCccCCchhhcC-CCCCCEEEccCCcCcccCCc
Q 041562          419 FKNLQVLGLA--E----CKLKG-----QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGN-MSSLFHIDFSNNLISGEFPK  486 (653)
Q Consensus       419 ~~~L~~L~L~--~----n~l~~-----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~  486 (653)
                      +++|++|+++  +    +.+++     .++..+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+.
T Consensus       396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~  474 (594)
T 2p1m_B          396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH  474 (594)
T ss_dssp             CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH
T ss_pred             CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH
Confidence            4556666666  2    33431     2233356677778888766 555554444544 77788888887776543222


Q ss_pred             cccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCcccccc
Q 041562          487 EFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPD  566 (653)
Q Consensus       487 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~  566 (653)
                      .+                                                      ...++ +|++|+|++|.+++..+.
T Consensus       475 ~l------------------------------------------------------~~~~~-~L~~L~L~~n~~~~~~~~  499 (594)
T 2p1m_B          475 HV------------------------------------------------------LSGCD-SLRKLEIRDCPFGDKALL  499 (594)
T ss_dssp             HH------------------------------------------------------HHHCT-TCCEEEEESCSCCHHHHH
T ss_pred             HH------------------------------------------------------HhcCC-CcCEEECcCCCCcHHHHH
Confidence            11                                                      01223 678888888888655443


Q ss_pred             -ccccCCCCCeEeCCCCeeeeecCccc-ccCCCCCeeecCCCcccccCC
Q 041562          567 -QISQLTNLERMDLSKNHLSGEIPVSL-KRLHFLSAFNVAENNLRGSIP  613 (653)
Q Consensus       567 -~l~~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L~~L~ls~N~l~g~iP  613 (653)
                       .+..+++|++|++++|+++......+ ..++.|+...+..+.-....|
T Consensus       500 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~  548 (594)
T 2p1m_B          500 ANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRP  548 (594)
T ss_dssp             HTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSC
T ss_pred             HHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcccccc
Confidence             34457888888888888864433444 456777666666654443333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=2.3e-26  Score=253.77  Aligned_cols=279  Identities=24%  Similarity=0.322  Sum_probs=208.9

Q ss_pred             CCCCCCCCCccccceEeC-------CCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccCCCcCEE
Q 041562           54 LNWSSSTDCCLWEGIKCD-------ANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKII  126 (653)
Q Consensus        54 ~~W~~~~~~c~w~gv~c~-------~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L  126 (653)
                      +.|..+.+||.|+|..|.       ....++.|++++++++ .+|..+.  ++|++|+|++|.++ .+|.  ..++|++|
T Consensus        13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~--~l~~L~~L   86 (622)
T 3g06_A           13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA--LPPELRTL   86 (622)
T ss_dssp             HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC--CCTTCCEE
T ss_pred             HHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC--cCCCCCEE
Confidence            357667789999775431       1235889999999988 7777665  79999999999988 4555  34889999


Q ss_pred             EccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccC
Q 041562          127 DLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFN  206 (653)
Q Consensus       127 ~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  206 (653)
                      +|++|.++ .+|.    .+++|++|++++|.+++..+      .+++|++|++++|.+++ +|..   +++|++|++++|
T Consensus        87 ~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N  151 (622)
T 3g06_A           87 EVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDN  151 (622)
T ss_dssp             EECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred             EcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCC
Confidence            99999988 6776    57889999999998887644      36788999999988875 4443   478888888888


Q ss_pred             CCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCc
Q 041562          207 YLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPS  286 (653)
Q Consensus       207 ~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  286 (653)
                      .+++ +|.   .+++|+.|++++|.+++ +|   ..+++|++|++++|.+++ +|..   +++|+.|++++|.++ .+|.
T Consensus       152 ~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~  218 (622)
T 3g06_A          152 QLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA  218 (622)
T ss_dssp             CCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             cCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC
Confidence            8874 443   34678888888888874 44   456788888888888875 3432   467888888888887 4554


Q ss_pred             cccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCC
Q 041562          287 SLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKS  366 (653)
Q Consensus       287 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  366 (653)
                      .   +++|+.|++++|.+++ +|    ..+++|+.|++++|.++ .+|.   .+++|+.|++++|.++ .+|..+..+++
T Consensus       219 ~---~~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~  285 (622)
T 3g06_A          219 L---PSGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSS  285 (622)
T ss_dssp             C---CTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCT
T ss_pred             C---CCCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccc
Confidence            2   4678888888888874 54    34577888888888887 4554   4577888888888887 66777788888


Q ss_pred             CCEEECCCCCCCC
Q 041562          367 LSFLSLSNNSLTN  379 (653)
Q Consensus       367 L~~L~Ls~n~l~~  379 (653)
                      |+.|++++|.++.
T Consensus       286 L~~L~L~~N~l~~  298 (622)
T 3g06_A          286 ETTVNLEGNPLSE  298 (622)
T ss_dssp             TCEEECCSCCCCH
T ss_pred             cCEEEecCCCCCC
Confidence            8888888887763

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=5.4e-27  Score=236.07  Aligned_cols=223  Identities=22%  Similarity=0.251  Sum_probs=116.5

Q ss_pred             EEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccC
Q 041562           77 SHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN  155 (653)
Q Consensus        77 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~  155 (653)
                      +.++.++.+++ .+|..+  .++|++|++++|.+++..+..+.. ++|++|++++|.++                     
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~---------------------   69 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA---------------------   69 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC---------------------
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc---------------------
Confidence            44555555554 233322  346666666666666544444433 44555555555444                     


Q ss_pred             CcCcccCChhhhhcCCCCCCEEEccCCc-CccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcc
Q 041562          156 NSFTGLISWSAWVDSFCSIRHLDLSNNR-FTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISG  234 (653)
Q Consensus       156 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~  234 (653)
                          +..+..+.  .+++|++|++++|. ++...+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+
T Consensus        70 ----~~~~~~~~--~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  143 (285)
T 1ozn_A           70 ----RIDAAAFT--GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA  143 (285)
T ss_dssp             ----EECTTTTT--TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ----eeCHhhcC--CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc
Confidence                33332221  34455555555554 443334455555555555555555554445555555555555555555554


Q ss_pred             cccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhcc
Q 041562          235 SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFS  314 (653)
Q Consensus       235 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~  314 (653)
                      ..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ++...+.
T Consensus       144 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~  222 (285)
T 1ozn_A          144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALA  222 (285)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHT
T ss_pred             cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcc
Confidence            444445555555555555555554444445555555555555555555555555555555556655555553 3333455


Q ss_pred             CCCCcCEEEccCCccc
Q 041562          315 TLLKLRVLDLGSNLFT  330 (653)
Q Consensus       315 ~l~~L~~L~L~~n~l~  330 (653)
                      .+++|++|++++|.+.
T Consensus       223 ~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          223 PLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TCTTCCEEECCSSCEE
T ss_pred             cCcccCEEeccCCCcc
Confidence            5555566666555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=8.5e-29  Score=252.50  Aligned_cols=203  Identities=20%  Similarity=0.214  Sum_probs=124.9

Q ss_pred             CCCCCEEEccCCcCccCCCccC--CCCCCCCEEEcccCCCCCCccccccCC-----CCCCEEeccCCcCcccccccccCC
Q 041562          171 FCSIRHLDLSNNRFTGPVPLGL--GSCSRLKTFRAGFNYLTGSLPDDIYTA-----TSLEQLSLSFNHISGSIKNGIVNL  243 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~i~~~~~~~l~~l  243 (653)
                      +++|++|++++|.+++.+|..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..++.+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            5556666666666655555554  5666666666666666644 5555444     666666666666665555666666


Q ss_pred             CCCcEEEcccCcCCcc--cCccc--cCCCCCCeEEeecCcCcc--cCC-ccccCCCCCcEEEccCCcCccccChhhccCC
Q 041562          244 TSLRILELYSNSLTGL--IPRDI--GKLTNLESLVLHNNSLSG--SLP-SSLKNCINLTLLNLQSNFFEGDISVFNFSTL  316 (653)
Q Consensus       244 ~~L~~L~L~~n~l~~~--~p~~l--~~l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l  316 (653)
                      ++|++|++++|++.+.  .|..+  +.+++|++|++++|++++  .++ ..+..+++|++|++++|.+++.++...+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            6666666666665543  22233  566666666766666652  111 2234566777777777777655543345556


Q ss_pred             CCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCC
Q 041562          317 LKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTN  379 (653)
Q Consensus       317 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  379 (653)
                      ++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|+++.
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            67777777777776 5565555  6777777777777654 44 6677777777777777653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=4.7e-28  Score=246.97  Aligned_cols=252  Identities=20%  Similarity=0.171  Sum_probs=157.5

Q ss_pred             ccCCCCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCC-CCCCchHHH------hcCCCCcEEEccCCcCcccCChhh
Q 041562           94 IGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHF-QGKIPSTIF------RLTQNLITFNVSNNSFTGLISWSA  166 (653)
Q Consensus        94 l~~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l-~~~ip~~~~------~~l~~L~~L~Ls~n~l~~~~~~~~  166 (653)
                      ++..++|++|++++|.+  .+|..+... |++|+|++|.+ .+.+|..+.      ..+++|++|++++|.+++.+|..+
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI-IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH-HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH-HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            34456677777777777  556544433 66777777776 344555443      136677777777777776666554


Q ss_pred             hhcCCCCCCEEEccCCcCccCCCccCCCC-----CCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCccc--cccc
Q 041562          167 WVDSFCSIRHLDLSNNRFTGPVPLGLGSC-----SRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGS--IKNG  239 (653)
Q Consensus       167 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~--~~~~  239 (653)
                      +...+++|++|++++|.+++. |..++.+     ++|++|++++|.+++..|..+..+++|++|++++|++.+.  .+..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence            333566777777777777655 5555555     6777777777777666666677777777777777766543  2333


Q ss_pred             c--cCCCCCcEEEcccCcCCcc--cC-ccccCCCCCCeEEeecCcCcccCC-ccccCCCCCcEEEccCCcCccccChhhc
Q 041562          240 I--VNLTSLRILELYSNSLTGL--IP-RDIGKLTNLESLVLHNNSLSGSLP-SSLKNCINLTLLNLQSNFFEGDISVFNF  313 (653)
Q Consensus       240 l--~~l~~L~~L~L~~n~l~~~--~p-~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~i~~~~~  313 (653)
                      +  ..+++|++|++++|++++.  ++ ..+..+++|++|++++|++++..| ..+..+++|++|++++|.++ .+|. .+
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~  272 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK-GL  272 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS-SC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh-hc
Confidence            3  6667777777777776631  11 223456677777777777766553 34455667777777777776 5553 22


Q ss_pred             cCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccc
Q 041562          314 STLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEG  355 (653)
Q Consensus       314 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  355 (653)
                      .  ++|++|++++|++++. |. +..+++|++|++++|.+++
T Consensus       273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            2  6677777777777644 44 6666777777777776654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=9.2e-26  Score=241.66  Aligned_cols=247  Identities=24%  Similarity=0.261  Sum_probs=152.4

Q ss_pred             CCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeec
Q 041562          198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHN  277 (653)
Q Consensus       198 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  277 (653)
                      .+.++..+..++ .+|..+.  ++++.|+|++|.+.+..+..|.++++|++|++++|++++..+..|.++++|++|+|++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            455666666665 4555443  4566666666666655556666666666666666666655555566666666666666


Q ss_pred             CcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCc-ccccCCccCcCCCCCCeEEccCcccccc
Q 041562          278 NSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL-FTGSLPITLNSCKSLTAVNLARNQLEGQ  356 (653)
Q Consensus       278 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~  356 (653)
                      |++++..+..+..+++|++|++++|.++ .++...|..+++|++|++++|+ +....+..+.++                
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l----------------  184 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL----------------  184 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC----------------
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc----------------
Confidence            6666444445556666666666666555 3333345555555555555532 222222234444                


Q ss_pred             CchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccc
Q 041562          357 ISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQV  436 (653)
Q Consensus       357 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  436 (653)
                              ++|++|++++|.++.++    .+..+++|+.|++++|.+.+..+..     +.++++|++|++++|++++..
T Consensus       185 --------~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~  247 (440)
T 3zyj_A          185 --------SNLRYLNLAMCNLREIP----NLTPLIKLDELDLSGNHLSAIRPGS-----FQGLMHLQKLWMIQSQIQVIE  247 (440)
T ss_dssp             --------SSCCEEECTTSCCSSCC----CCTTCSSCCEEECTTSCCCEECTTT-----TTTCTTCCEEECTTCCCCEEC
T ss_pred             --------cccCeecCCCCcCcccc----ccCCCcccCEEECCCCccCccChhh-----hccCccCCEEECCCCceeEEC
Confidence                    44455555555444333    1344455555555555555444432     346778888888888888777


Q ss_pred             hhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCc
Q 041562          437 PSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS  481 (653)
Q Consensus       437 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  481 (653)
                      +..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++.
T Consensus       248 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            778888888888888888888777777888888888888888875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=7.3e-26  Score=243.29  Aligned_cols=247  Identities=21%  Similarity=0.184  Sum_probs=131.3

Q ss_pred             CCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEc
Q 041562          100 LSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDL  179 (653)
Q Consensus       100 L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L  179 (653)
                      .+.++.++..++ .+|..+. +++++|+|++|+++                         +..+..+.  .+++|++|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~-~~l~~L~L~~n~i~-------------------------~~~~~~~~--~l~~L~~L~L  106 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP-SNTRYLNLMENNIQ-------------------------MIQADTFR--HLHHLEVLQL  106 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCC-------------------------EECTTTTT--TCTTCCEEEC
T ss_pred             CcEEEECCCCcC-ccCCCCC-CCccEEECcCCcCc-------------------------eECHHHcC--CCCCCCEEEC
Confidence            345666666665 3443222 45555555555555                         33332221  3444555555


Q ss_pred             cCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCc-CCc
Q 041562          180 SNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNS-LTG  258 (653)
Q Consensus       180 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-l~~  258 (653)
                      ++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+....+..+.++++|++|++++|. +..
T Consensus       107 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~  186 (452)
T 3zyi_A          107 GRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY  186 (452)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred             CCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc
Confidence            5555544444455555555555555555554334445555555555555555554444455555555555555532 222


Q ss_pred             ccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCc
Q 041562          259 LIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLN  338 (653)
Q Consensus       259 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  338 (653)
                      ..+..|..+++|++|++++|++++ +| .+..+++|++|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+.
T Consensus       187 i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~  263 (452)
T 3zyi_A          187 ISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLIERNAFD  263 (452)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECG-GGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCc-ccccCccCCCEEEeCCCcCceECHHHhc
Confidence            222345555566666666665553 23 35555666666666666653323 3555666666666666666655555666


Q ss_pred             CCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562          339 SCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT  378 (653)
Q Consensus       339 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  378 (653)
                      .+++|+.|+|++|++++..+..+..+++|++|++++|.+.
T Consensus       264 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            6666666666666666555555555666666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=9.1e-26  Score=242.57  Aligned_cols=247  Identities=21%  Similarity=0.236  Sum_probs=161.4

Q ss_pred             CCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeec
Q 041562          198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHN  277 (653)
Q Consensus       198 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  277 (653)
                      .+.++.++..++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|+|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            456677666666 4565443  5677777777777766667777777777777777777766666777777777777777


Q ss_pred             CcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCC-cccccCCccCcCCCCCCeEEccCcccccc
Q 041562          278 NSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSN-LFTGSLPITLNSCKSLTAVNLARNQLEGQ  356 (653)
Q Consensus       278 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  356 (653)
                      |++++..+..+..+++|++|++++|.++ .++...|..+++|++|++++| .+....+..+.++++|++|++++|.+++.
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            7777555555666777777777777766 444445666666666666663 33322233455555555555555555432


Q ss_pred             CchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccc
Q 041562          357 ISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQV  436 (653)
Q Consensus       357 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  436 (653)
                       | .+..+++|++|++++|.+                          .+..+..     +.++++|++|++++|++++..
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l--------------------------~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~  258 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHF--------------------------PEIRPGS-----FHGLSSLKKLWVMNSQVSLIE  258 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCC--------------------------SEECGGG-----GTTCTTCCEEECTTSCCCEEC
T ss_pred             -c-cccccccccEEECcCCcC--------------------------cccCccc-----ccCccCCCEEEeCCCcCceEC
Confidence             2 244444455555544444                          4333322     235677788888888887777


Q ss_pred             hhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCc
Q 041562          437 PSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS  481 (653)
Q Consensus       437 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  481 (653)
                      +..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++.
T Consensus       259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            777888888888888888888766677777888888888888765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=6.2e-26  Score=243.00  Aligned_cols=247  Identities=22%  Similarity=0.228  Sum_probs=118.5

Q ss_pred             CCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEc
Q 041562          100 LSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDL  179 (653)
Q Consensus       100 L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L  179 (653)
                      .+.++.+++.++ .+|..+. +++++|+|++|+++ .++...+..+++|++|+|++|.+++..+..+.  .+++|++|++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~--~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS-TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN--GLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC-TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGT--TCSSCCEEEC
T ss_pred             CCEEEeCCCCcC-cCCCCCC-CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhcc--CCccCCEEEC
Confidence            456777777776 4554332 56666666666666 33333344455555555555555544433322  3455555555


Q ss_pred             cCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcc
Q 041562          180 SNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGL  259 (653)
Q Consensus       180 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  259 (653)
                      ++|+++...+..+..+++|++|++++|.++...+..+..+++|++|++++|.                       .+...
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-----------------------~l~~i  176 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-----------------------RLSYI  176 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----------------------TCCEE
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC-----------------------Cccee
Confidence            5555544333344444444444444444443333344444444444444422                       22211


Q ss_pred             cCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcC
Q 041562          260 IPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS  339 (653)
Q Consensus       260 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  339 (653)
                      .+..|.++++|++|++++|.++ .+| .+..+++|++|++++|.+++..+ ..|..+++|+.|++++|.+++..+..|..
T Consensus       177 ~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  253 (440)
T 3zyj_A          177 SEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIERNAFDN  253 (440)
T ss_dssp             CTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred             CcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeEEChhhhcC
Confidence            1223444444444444444444 222 24444444444444444442222 24444455555555555555444444555


Q ss_pred             CCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCC
Q 041562          340 CKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSL  377 (653)
Q Consensus       340 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  377 (653)
                      +++|++|+|++|++++..+..+..+++|+.|++++|.+
T Consensus       254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            55555555555555544444444555555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=5.3e-26  Score=226.75  Aligned_cols=217  Identities=28%  Similarity=0.347  Sum_probs=140.9

Q ss_pred             CCCccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCc
Q 041562           60 TDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIP  138 (653)
Q Consensus        60 ~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip  138 (653)
                      .++|.|.|+.|.-.+.++.+++++++++. +|..+.  +++++|+|++|.+++..+..+.. ++|++|++++|.++ .+|
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCC
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeC
Confidence            58999999999765667788888888773 555443  56778888888777655555554 66666666666666 555


Q ss_pred             hHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccC
Q 041562          139 STIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYT  218 (653)
Q Consensus       139 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  218 (653)
                      ..++..+++|++|++++|                          .+++..+..+..+++|++|++++|.+++..+..+..
T Consensus        78 ~~~~~~l~~L~~L~l~~n--------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  131 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDN--------------------------KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS  131 (270)
T ss_dssp             TTTTSSCTTCCEEECCSS--------------------------CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred             hhhhcCCCCCCEEECCCC--------------------------cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc
Confidence            555444555555555555                          444444444555555666666666655555555566


Q ss_pred             CCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEE
Q 041562          219 ATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLN  298 (653)
Q Consensus       219 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  298 (653)
                      +++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+
T Consensus       132 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  211 (270)
T 2o6q_A          132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ  211 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence            66666666666666654445566667777777777777665555666777777777777777755555566777777777


Q ss_pred             ccCCcCcc
Q 041562          299 LQSNFFEG  306 (653)
Q Consensus       299 L~~n~l~~  306 (653)
                      +++|.+..
T Consensus       212 l~~N~~~c  219 (270)
T 2o6q_A          212 LQENPWDC  219 (270)
T ss_dssp             CCSSCBCC
T ss_pred             ecCCCeeC
Confidence            77777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=8.6e-25  Score=241.18  Aligned_cols=266  Identities=27%  Similarity=0.271  Sum_probs=134.2

Q ss_pred             CCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEccc
Q 041562          174 IRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS  253 (653)
Q Consensus       174 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  253 (653)
                      +++|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|+|++|.++ .+|.   .+++|++|++++
T Consensus        42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~  110 (622)
T 3g06_A           42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFS  110 (622)
T ss_dssp             CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECS
T ss_pred             CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcC
Confidence            444444444444 3333332  34444444444444 2332   2344455555555444 2332   344455555555


Q ss_pred             CcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccC
Q 041562          254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSL  333 (653)
Q Consensus       254 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~  333 (653)
                      |++++. |.   .+++|+.|++++|++++ +|..   +++|++|++++|.+++ ++.    .+++|+.|++++|.+++ +
T Consensus       111 N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~-l  176 (622)
T 3g06_A          111 NPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTS-L  176 (622)
T ss_dssp             CCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-C
T ss_pred             CcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC----ccCCCCEEECCCCCCCC-C
Confidence            554432 22   33445555555555542 3322   2455555555555542 221    23445555555555552 3


Q ss_pred             CccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccc
Q 041562          334 PITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRL  413 (653)
Q Consensus       334 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  413 (653)
                      |   ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.++.++.      .+++|+.|++++|.+.+ +|     
T Consensus       177 ~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~------~~~~L~~L~Ls~N~L~~-lp-----  237 (622)
T 3g06_A          177 P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPA------LPSGLKELIVSGNRLTS-LP-----  237 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCC------CCTTCCEEECCSSCCSC-CC-----
T ss_pred             c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCC------CCCCCCEEEccCCccCc-CC-----
Confidence            3   223455555555555543 222   12455555555555554442      12455566666555544 22     


Q ss_pred             cCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCC
Q 041562          414 TSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRL  491 (653)
Q Consensus       414 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  491 (653)
                         ..+++|++|++++|.++ .+|.   .+++|+.|+|++|+++ .+|..+.++++|+.|+|++|++++.+|..+..+
T Consensus       238 ---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          238 ---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             ---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence               13456777777777766 3444   4566777777777776 556667777777777777777776666655443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.5e-27  Score=243.94  Aligned_cols=257  Identities=18%  Similarity=0.162  Sum_probs=131.8

Q ss_pred             CEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEc
Q 041562           75 RVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNV  153 (653)
Q Consensus        75 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L  153 (653)
                      +....+++.+.+...+...+..+++|++|+|++|.+++..|..+.. ++|++|+|++|.+++..|   +..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence            3445556666665554455555666777777777766555555544 556666666665553332   344555555555


Q ss_pred             cCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCc
Q 041562          154 SNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHIS  233 (653)
Q Consensus       154 s~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~  233 (653)
                      ++|.+++..       ..++|++|++++|.+++..+.                           .+++|++|++++|.++
T Consensus        88 s~n~l~~l~-------~~~~L~~L~l~~n~l~~~~~~---------------------------~~~~L~~L~l~~N~l~  133 (317)
T 3o53_A           88 NNNYVQELL-------VGPSIETLHAANNNISRVSCS---------------------------RGQGKKNIYLANNKIT  133 (317)
T ss_dssp             CSSEEEEEE-------ECTTCCEEECCSSCCSEEEEC---------------------------CCSSCEEEECCSSCCC
T ss_pred             cCCcccccc-------CCCCcCEEECCCCccCCcCcc---------------------------ccCCCCEEECCCCCCC
Confidence            555554432       124555555555555433222                           1344555555555554


Q ss_pred             ccccccccCCCCCcEEEcccCcCCcccCccc-cCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhh
Q 041562          234 GSIKNGIVNLTSLRILELYSNSLTGLIPRDI-GKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFN  312 (653)
Q Consensus       234 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~  312 (653)
                      +..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++ ++. .
T Consensus       134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~-~  209 (317)
T 3o53_A          134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGP-E  209 (317)
T ss_dssp             SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECG-G
T ss_pred             CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chh-h
Confidence            4444444455555555555555554444333 2445555555555555433 1 12234555555555555552 322 2


Q ss_pred             ccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccc-ccCchhhcCCCCCCEEECC
Q 041562          313 FSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE-GQISPGIVALKSLSFLSLS  373 (653)
Q Consensus       313 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls  373 (653)
                      +..+++|++|++++|.++ .+|..+..+++|+.|++++|.+. +..+.++..+++|+.++++
T Consensus       210 ~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            445555555555555555 34445555555555555555555 4445555555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=6.1e-29  Score=277.32  Aligned_cols=374  Identities=16%  Similarity=0.159  Sum_probs=201.5

Q ss_pred             CCCCCCEEEccCCcCccCCCccCC-CCCCCCEEEcccC-CCCCC-ccccccCCCCCCEEeccCCcCcccccccc----cC
Q 041562          170 SFCSIRHLDLSNNRFTGPVPLGLG-SCSRLKTFRAGFN-YLTGS-LPDDIYTATSLEQLSLSFNHISGSIKNGI----VN  242 (653)
Q Consensus       170 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l----~~  242 (653)
                      .+++|++|++++|.+++..+..+. .+++|++|++++| .+++. ++..+..+++|++|++++|.+++..+..+    ..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            355666666666655544444443 4556666666655 33321 23333356666666666666554333322    24


Q ss_pred             CCCCcEEEcccCc--CCcc-cCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCc-------CccccChhh
Q 041562          243 LTSLRILELYSNS--LTGL-IPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNF-------FEGDISVFN  312 (653)
Q Consensus       243 l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------l~~~i~~~~  312 (653)
                      +++|++|++++|.  +... ++..+..+++|++|++++|...+.++..+..+++|++|+++.+.       +.+ ++. .
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~-~  260 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSV-A  260 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHH-H
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHH-H
Confidence            5566666666664  2111 11112335666666666662222355555666666666644332       221 221 4


Q ss_pred             ccCCCCcCEE-EccCCcccccCCccCcCCCCCCeEEccCccccccCch-hhcCCCCCCEEECCCCCCCCCCcchh-hccC
Q 041562          313 FSTLLKLRVL-DLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISP-GIVALKSLSFLSLSNNSLTNITGAIR-ILMG  389 (653)
Q Consensus       313 ~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~  389 (653)
                      +.++++|+.| .+.+... +.++..+..+++|++|++++|.+++.... .+..+++|++|++++| ++  ...+. ....
T Consensus       261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~--~~~l~~l~~~  336 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE--DAGLEVLAST  336 (594)
T ss_dssp             HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH--HHHHHHHHHH
T ss_pred             HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC--HHHHHHHHHh
Confidence            5566666666 3332222 23343444556677777766665533222 2345666777777665 22  11111 1223


Q ss_pred             CCCCcEEECCC---------CCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhc-CCccCCeeeCc--C----
Q 041562          390 CKNLKVLIIPL---------NFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIG-KLKKLQVLDLS--F----  453 (653)
Q Consensus       390 l~~L~~L~l~~---------n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls--~----  453 (653)
                      +++|+.|++..         +.+++.....    ...++++|++|.+..+.+++..+..+. .+++|+.|+++  +    
T Consensus       337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~----l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~  412 (594)
T 2p1m_B          337 CKDLRELRVFPSEPFVMEPNVALTEQGLVS----VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP  412 (594)
T ss_dssp             CTTCCEEEEECSCTTCSSCSSCCCHHHHHH----HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred             CCCCCEEEEecCcccccccCCCCCHHHHHH----HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence            56666665532         1221110000    001256666666666666655444443 36667777766  2    


Q ss_pred             CcCccC-----CchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccc
Q 041562          454 NQLTGS-----VPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILT  528 (653)
Q Consensus       454 n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (653)
                      +.+++.     ++..+..+++|++|++++ .+++..+                                           
T Consensus       413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~-------------------------------------------  448 (594)
T 2p1m_B          413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF-------------------------------------------  448 (594)
T ss_dssp             CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH-------------------------------------------
T ss_pred             ccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH-------------------------------------------
Confidence            344321     112245566666666655 3332211                                           


Q ss_pred             cccccceeeeCChHHHh-HHhccCeeecCCccCcccccccc-ccCCCCCeEeCCCCeeeeecCc-ccccCCCCCeeecCC
Q 041562          529 FHEQYTWKTTASAAVSL-LRLLLHMLDLSHNNFSGNIPDQI-SQLTNLERMDLSKNHLSGEIPV-SLKRLHFLSAFNVAE  605 (653)
Q Consensus       529 ~~~~~~l~g~ip~~l~~-l~~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~ls~  605 (653)
                                  ..++. ++ .|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|++|++++
T Consensus       449 ------------~~l~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~  515 (594)
T 2p1m_B          449 ------------EYIGTYAK-KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS  515 (594)
T ss_dssp             ------------HHHHHHCT-TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEES
T ss_pred             ------------HHHHHhch-hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeC
Confidence                        22222 33 79999999999987766665 6799999999999999765444 345689999999999


Q ss_pred             Ccccc
Q 041562          606 NNLRG  610 (653)
Q Consensus       606 N~l~g  610 (653)
                      |+++.
T Consensus       516 ~~~~~  520 (594)
T 2p1m_B          516 CSVSF  520 (594)
T ss_dssp             SCCBH
T ss_pred             CCCCH
Confidence            99853

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=7.8e-27  Score=238.54  Aligned_cols=242  Identities=20%  Similarity=0.210  Sum_probs=122.5

Q ss_pred             CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcc
Q 041562          173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY  252 (653)
Q Consensus       173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  252 (653)
                      +|++|++++|.+++..|..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..     ..++|++|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence            33344444443333333334444444444444444443222  444555555555555544211     22455555555


Q ss_pred             cCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccccc
Q 041562          253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGS  332 (653)
Q Consensus       253 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~  332 (653)
                      +|++++..+.   .+++|++|++++|++++..+..+..+++|++|++++|.+++..+...+..+++|++|++++|.+++.
T Consensus       108 ~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  184 (317)
T 3o53_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (317)
T ss_dssp             SSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence            5555543322   2345555555555555544445555555666666666555333321223455666666666665533


Q ss_pred             CCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCccc
Q 041562          333 LPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDR  412 (653)
Q Consensus       333 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  412 (653)
                       + ....+++|++|++++|.+++. +..+..+++|++|++++|.++.++..                             
T Consensus       185 -~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~-----------------------------  232 (317)
T 3o53_A          185 -K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKA-----------------------------  232 (317)
T ss_dssp             -E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTT-----------------------------
T ss_pred             -c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhH-----------------------------
Confidence             1 122355666666666666533 33355556666666666655433211                             


Q ss_pred             ccCCCCCCCcCEEEccCCcCc-ccchhhhcCCccCCeeeCcCC-cCccC
Q 041562          413 LTSANGFKNLQVLGLAECKLK-GQVPSWIGKLKKLQVLDLSFN-QLTGS  459 (653)
Q Consensus       413 ~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n-~l~~~  459 (653)
                         +..+++|+.|++++|.+. +.+|.++..+++|+.|+++++ .+.+.
T Consensus       233 ---~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          233 ---LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             ---CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             ---hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence               124456667777777666 566667777777777777644 34443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.2e-26  Score=247.59  Aligned_cols=220  Identities=23%  Similarity=0.269  Sum_probs=151.8

Q ss_pred             CCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEE
Q 041562          292 INLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLS  371 (653)
Q Consensus       292 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  371 (653)
                      ++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+     .++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISA-ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCG-GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCH-HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            366777777776664333 356666667777777766665444  6666666666666666654321     25566666


Q ss_pred             CCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeC
Q 041562          372 LSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDL  451 (653)
Q Consensus       372 Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  451 (653)
                      +++|.++.++                          +        ..+++|+.|++++|.+++..|..++.+++|++|++
T Consensus       106 L~~N~l~~~~--------------------------~--------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  151 (487)
T 3oja_A          106 AANNNISRVS--------------------------C--------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL  151 (487)
T ss_dssp             CCSSCCCCEE--------------------------E--------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred             CcCCcCCCCC--------------------------c--------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence            6666555332                          2        13467888888888888777777888888888888


Q ss_pred             cCCcCccCCchhhc-CCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccc
Q 041562          452 SFNQLTGSVPRFLG-NMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFH  530 (653)
Q Consensus       452 s~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (653)
                      ++|++++.+|..+. .+++|++|+|++|.+++..+.  ..++                                      
T Consensus       152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--~~l~--------------------------------------  191 (487)
T 3oja_A          152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFA--------------------------------------  191 (487)
T ss_dssp             TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCT--------------------------------------
T ss_pred             CCCCCCCcChHHHhhhCCcccEEecCCCcccccccc--ccCC--------------------------------------
Confidence            88888887777765 688888888888888754211  1111                                      


Q ss_pred             cccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCccc-
Q 041562          531 EQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR-  609 (653)
Q Consensus       531 ~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~-  609 (653)
                                        .|+.|+|++|.+++..| .+..+++|+.|||++|.+++ +|..+..+++|+.|++++|++. 
T Consensus       192 ------------------~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          192 ------------------KLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             ------------------TCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred             ------------------CCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence                              67888888888886444 47788888888888888884 6777888888888888888887 


Q ss_pred             ccCC
Q 041562          610 GSIP  613 (653)
Q Consensus       610 g~iP  613 (653)
                      +.+|
T Consensus       252 ~~~~  255 (487)
T 3oja_A          252 GTLR  255 (487)
T ss_dssp             HHHH
T ss_pred             cchH
Confidence            4444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=7.8e-26  Score=244.53  Aligned_cols=235  Identities=19%  Similarity=0.171  Sum_probs=122.5

Q ss_pred             CCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCC
Q 041562           96 NLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSI  174 (653)
Q Consensus        96 ~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L  174 (653)
                      .+++|++|+|++|.+++..|..+.. ++|++|+|++|.+++..|   +..+++|++|++++|.+++..+       .++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-------~~~L  101 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-------GPSI  101 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-------CTTC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-------CCCc
Confidence            3446777777777777655555554 666666666666654333   3445556666666665554331       2455


Q ss_pred             CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccC
Q 041562          175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSN  254 (653)
Q Consensus       175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  254 (653)
                      ++|++++|.+++..+.                           .+++|++|++++|.+++..|..++.+++|++|++++|
T Consensus       102 ~~L~L~~N~l~~~~~~---------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  154 (487)
T 3oja_A          102 ETLHAANNNISRVSCS---------------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN  154 (487)
T ss_dssp             CEEECCSSCCCCEEEC---------------------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS
T ss_pred             CEEECcCCcCCCCCcc---------------------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC
Confidence            5555555555443222                           2344445555555554444444445555555555555


Q ss_pred             cCCcccCcccc-CCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccC
Q 041562          255 SLTGLIPRDIG-KLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSL  333 (653)
Q Consensus       255 ~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~  333 (653)
                      .+++..|..+. .+++|++|+|++|.+++..  ....+++|+.|++++|.+++..+  .+..+++|+.|++++|.+++ +
T Consensus       155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~-l  229 (487)
T 3oja_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVL-I  229 (487)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCE-E
T ss_pred             CCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcCcc-c
Confidence            55544444443 4455555555555554331  12235555555555555553222  24455555555555555553 4


Q ss_pred             CccCcCCCCCCeEEccCcccc-ccCchhhcCCCCCCEEEC
Q 041562          334 PITLNSCKSLTAVNLARNQLE-GQISPGIVALKSLSFLSL  372 (653)
Q Consensus       334 ~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L  372 (653)
                      |..+..+++|+.|++++|.+. +.+|.++..++.|+.+++
T Consensus       230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence            445555556666666666555 444455555555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.8e-23  Score=209.23  Aligned_cols=204  Identities=23%  Similarity=0.219  Sum_probs=89.1

Q ss_pred             CCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEe
Q 041562          147 NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLS  226 (653)
Q Consensus       147 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  226 (653)
                      +|++|++++|.+++..+..+.  .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CccEEECCCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            344444444444443332221  344455555555544444444444455555555555554444444444445555555


Q ss_pred             ccCCcCcccccccccCCCCCcEEEcccCcCCcc-cCccccCCCCCCeEEeecCcCcccCCccccCCCCCc----EEEccC
Q 041562          227 LSFNHISGSIKNGIVNLTSLRILELYSNSLTGL-IPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLT----LLNLQS  301 (653)
Q Consensus       227 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~  301 (653)
                      +++|.+.+..+..+..+++|++|++++|++++. +|..++.+++|++|++++|++++..+..+..+++|+    +|++++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            555544443333444445555555555544432 244444445555555555544443333333333333    444444


Q ss_pred             CcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccc
Q 041562          302 NFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE  354 (653)
Q Consensus       302 n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  354 (653)
                      |.+++ ++...+ ...+|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       187 n~l~~-~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          187 NPMNF-IQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             SCCCE-ECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             Ccccc-cCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            44442 221111 1224444444444444333333344444444444444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.91  E-value=7.7e-26  Score=233.39  Aligned_cols=237  Identities=18%  Similarity=0.194  Sum_probs=152.6

Q ss_pred             CCCCccccceEeCCCCCEEEEEcCCCCcceeccccccCC--CCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCC
Q 041562           59 STDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNL--THLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGK  136 (653)
Q Consensus        59 ~~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l--~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~  136 (653)
                      +.-|.+|.++.|+ ...++.++++++.+.   +..+..+  +++++|++++|.+.+..+..+..++|++|++++|.+++.
T Consensus        33 ~~vc~~W~~~~~~-~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~  108 (336)
T 2ast_B           33 SGVCKRWYRLASD-ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS  108 (336)
T ss_dssp             TSSCHHHHHHHTC-STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH
T ss_pred             HHHHHHHHHHhcC-chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH
Confidence            3456689999987 346888999988776   4556666  889999999999988877766568888888888887754


Q ss_pred             -CchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCC-cCcc-CCCccCCCCCCCCEEEcccC-CCCCC-
Q 041562          137 -IPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNN-RFTG-PVPLGLGSCSRLKTFRAGFN-YLTGS-  211 (653)
Q Consensus       137 -ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-  211 (653)
                       +|. ++..+++|++|++++|.+++..+..+.  .+++|++|++++| .+++ .++..+..+++|++|++++| .+++. 
T Consensus       109 ~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~  185 (336)
T 2ast_B          109 TLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH  185 (336)
T ss_dssp             HHHH-HHTTBCCCSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred             HHHH-HHhhCCCCCEEeCcCcccCHHHHHHHh--cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence             443 455677888888887777665554443  4677777777777 4554 24444556666666666666 66543 


Q ss_pred             ccccccCCC-CCCEEeccCC--cCc-ccccccccCCCCCcEEEcccCc-CCcccCccccCCCCCCeEEeecCc-CcccCC
Q 041562          212 LPDDIYTAT-SLEQLSLSFN--HIS-GSIKNGIVNLTSLRILELYSNS-LTGLIPRDIGKLTNLESLVLHNNS-LSGSLP  285 (653)
Q Consensus       212 ~p~~l~~l~-~L~~L~Ls~n--~i~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p  285 (653)
                      ++..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..++.+++|++|++++|. +.....
T Consensus       186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  265 (336)
T 2ast_B          186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL  265 (336)
T ss_dssp             HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred             HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH
Confidence            455555666 6666666666  333 3344555566666666666666 444445555666666666666653 221111


Q ss_pred             ccccCCCCCcEEEccCC
Q 041562          286 SSLKNCINLTLLNLQSN  302 (653)
Q Consensus       286 ~~l~~l~~L~~L~L~~n  302 (653)
                      ..+.++++|++|++++|
T Consensus       266 ~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          266 LELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGCTTCCEEECTTS
T ss_pred             HHHhcCCCCCEEeccCc
Confidence            23455555555555555

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=6.5e-23  Score=205.16  Aligned_cols=205  Identities=25%  Similarity=0.221  Sum_probs=155.8

Q ss_pred             CCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEc
Q 041562          172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILEL  251 (653)
Q Consensus       172 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  251 (653)
                      ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46888888888888777778888888888888888888666667888888888888888888777778888888888888


Q ss_pred             ccCcCCcccCccccCCCCCCeEEeecCcCccc-CCccccCCCCCcEEEccCCcCccccChhhccCCCCcC----EEEccC
Q 041562          252 YSNSLTGLIPRDIGKLTNLESLVLHNNSLSGS-LPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLR----VLDLGS  326 (653)
Q Consensus       252 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~----~L~L~~  326 (653)
                      ++|++.+..+..++.+++|++|++++|.+++. +|..+..+++|++|++++|.+++ ++...+..+++|+    .|++++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHHhhhhhhccccceeeecCC
Confidence            88888877666788888888888888888753 57788888888888888888874 3333455555555    788888


Q ss_pred             CcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562          327 NLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT  378 (653)
Q Consensus       327 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  378 (653)
                      |.+++..+..+. ..+|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus       187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            887754444443 347777888877777655555667777777777777765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.4e-22  Score=200.21  Aligned_cols=201  Identities=23%  Similarity=0.243  Sum_probs=102.8

Q ss_pred             CCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEccc
Q 041562          174 IRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS  253 (653)
Q Consensus       174 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  253 (653)
                      .++++++++.++ .+|..+.  +++++|++++|.+++..+..+..+++|++|++++|.++...+..+.++++|++|++++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            344444444444 2333222  3445555555555443333455555555555555555433333345555555555555


Q ss_pred             CcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccC
Q 041562          254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSL  333 (653)
Q Consensus       254 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~  333 (653)
                      |++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeC
Confidence            5555444444555555555555555555444444555555555555555555 233334555555555555555555444


Q ss_pred             CccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562          334 PITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT  378 (653)
Q Consensus       334 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  378 (653)
                      +..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            444555555666666665555444444555555666666555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=2.5e-22  Score=201.94  Aligned_cols=204  Identities=23%  Similarity=0.272  Sum_probs=144.3

Q ss_pred             cccCCCCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCC
Q 041562           93 SIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFC  172 (653)
Q Consensus        93 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~  172 (653)
                      .+.+++++++++++++.++ .+|..+. +++++|+|++|.++ .++...+..+++|++|++++|.+++..+.    ..++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~-~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~   77 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP-KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLP   77 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC-TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCT
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC-CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC----CCCC
Confidence            4677888999999998887 4554443 67888888888887 44445566688888888888888776543    2577


Q ss_pred             CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcc
Q 041562          173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY  252 (653)
Q Consensus       173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  252 (653)
                      +|++|++++|.++ .+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence            7888888888776 566667777777777777777775555667777777777777777776555566677777777777


Q ss_pred             cCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCc
Q 041562          253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFE  305 (653)
Q Consensus       253 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  305 (653)
                      +|++++..+..+..+++|++|+|++|+++ .+|..+...++|+.|++++|.+.
T Consensus       157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            77776555455566777777777777776 55666666666666666666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=8.4e-23  Score=203.73  Aligned_cols=184  Identities=23%  Similarity=0.197  Sum_probs=87.8

Q ss_pred             CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562          171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  250 (653)
                      +++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        62 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  139 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN  139 (272)
T ss_dssp             CTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence            34444444444444321  2344444444444444444433333344444455555555544444444444555555555


Q ss_pred             cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562          251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      +++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus       140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCCcc
Confidence            55555554444444455555555555555554444444555555555555555553222 23455555555555555443


Q ss_pred             ccCCccCcCCCCCCeEEccCccccccCchhhcCC
Q 041562          331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVAL  364 (653)
Q Consensus       331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  364 (653)
                      +       .+++|+.++++.|.++|.+|.+++.+
T Consensus       219 ~-------~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          219 C-------TCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             C-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             c-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence            2       23345555555555555555555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.4e-22  Score=202.22  Aligned_cols=228  Identities=19%  Similarity=0.180  Sum_probs=174.2

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEE
Q 041562           99 HLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLD  178 (653)
Q Consensus        99 ~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~  178 (653)
                      ++..+++..+.+.+... .-..++|+.|++++|.++ .++.  +..+++|++|++++|.+++..  .  ...+++|++|+
T Consensus        20 ~l~~l~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~--~--l~~l~~L~~L~   91 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVT-QNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS--A--LKELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHTCSCTTSEEC-HHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCG--G--GTTCTTCCEEE
T ss_pred             HHHHHHhcCcccccccc-cccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCch--h--hcCCCCCCEEE
Confidence            34445555555553321 111278888888888887 4553  456888888888888887742  2  23688888888


Q ss_pred             ccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCc
Q 041562          179 LSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTG  258 (653)
Q Consensus       179 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  258 (653)
                      +++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus        92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  171 (272)
T 3rfs_A           92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS  171 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence            88888887777778888888888888888887666677888888888888888887666777888888888888888887


Q ss_pred             ccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCc
Q 041562          259 LIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLN  338 (653)
Q Consensus       259 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  338 (653)
                      ..+..++.+++|++|++++|++++..+..+..+++|++|++++|.+.+.        +++|+.++++.|.++|.+|.+++
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHHHhCCCcccCccc
Confidence            7776778888888888888888877777788888888888888877643        45678888888888888888777


Q ss_pred             CCCC
Q 041562          339 SCKS  342 (653)
Q Consensus       339 ~l~~  342 (653)
                      .+..
T Consensus       244 ~~~~  247 (272)
T 3rfs_A          244 SVAP  247 (272)
T ss_dssp             CBCG
T ss_pred             ccCC
Confidence            5543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=9.1e-22  Score=197.81  Aligned_cols=201  Identities=23%  Similarity=0.188  Sum_probs=113.2

Q ss_pred             CCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEE
Q 041562          170 SFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL  249 (653)
Q Consensus       170 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  249 (653)
                      +++++++++++++.++ .+|..+.  +++++|++++|.+++..+..+..+++|++|++++|.+++. +. .+.+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEE
T ss_pred             ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEE
Confidence            3445555555555554 3333332  4555555555555555555555566666666666655532 22 1455666666


Q ss_pred             EcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562          250 ELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF  329 (653)
Q Consensus       250 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l  329 (653)
                      ++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.++ .++...|..+++|+.|++++|++
T Consensus        83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcC
Confidence            66666665 34555556666666666666666554455666666666666666665 33333455566666666666666


Q ss_pred             cccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562          330 TGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT  378 (653)
Q Consensus       330 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  378 (653)
                      ++..+..+..+++|+.|++++|+++ .+|..+....+|+.+++++|.+.
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            6444444555666666666666665 45555555556666666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=4.2e-23  Score=210.17  Aligned_cols=201  Identities=21%  Similarity=0.177  Sum_probs=95.6

Q ss_pred             CCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCC----ccCCCCCCCCEEEcccCCCCCCccccccCCCCC
Q 041562          147 NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP----LGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSL  222 (653)
Q Consensus       147 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  222 (653)
                      +|++|++++|.+++..|..+....+++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            3444444444444444433211234444444444444443322    223344455555555555544444445555555


Q ss_pred             CEEeccCCcCccc--c--cccccCCCCCcEEEcccCcCCcccCc----cccCCCCCCeEEeecCcCcccCCccccCC---
Q 041562          223 EQLSLSFNHISGS--I--KNGIVNLTSLRILELYSNSLTGLIPR----DIGKLTNLESLVLHNNSLSGSLPSSLKNC---  291 (653)
Q Consensus       223 ~~L~Ls~n~i~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l---  291 (653)
                      ++|++++|++.+.  +  +..+..+++|++|++++|+++.. +.    .++.+++|++|+|++|++++..|..+..+   
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            5555555544321  1  11224455555555555555421 11    13444555555555555554444444444   


Q ss_pred             CCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccc
Q 041562          292 INLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE  354 (653)
Q Consensus       292 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  354 (653)
                      ++|++|++++|.++ .+|. .+  .++|++|++++|++++. |. +..+++|+.|++++|.++
T Consensus       251 ~~L~~L~Ls~N~l~-~lp~-~~--~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          251 SALNSLNLSFAGLE-QVPK-GL--PAKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TTCCCEECCSSCCC-SCCS-CC--CSCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             CcCCEEECCCCCCC-chhh-hh--cCCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            35555555555555 4442 12  14566666666666532 22 445566666666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=5.5e-22  Score=195.35  Aligned_cols=136  Identities=24%  Similarity=0.235  Sum_probs=74.3

Q ss_pred             CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562          171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  250 (653)
                      +++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  137 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR  137 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence            44444444444444444444455555555555555555544444455555555555555555544444455556666666


Q ss_pred             cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCcc
Q 041562          251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEG  306 (653)
Q Consensus       251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  306 (653)
                      +++|++++..+..|+.+++|++|+|++|++++..+..+..+++|++|++++|.+.+
T Consensus       138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            66666655444455556666666666666655544455555666666666665554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.6e-23  Score=218.05  Aligned_cols=83  Identities=17%  Similarity=0.164  Sum_probs=39.4

Q ss_pred             EEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCC----ccccC-C-CcCEEEccCCCCCCCCchHHHhc----CCCC
Q 041562           79 LWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFP----SSLSS-N-YIKIIDLSSNHFQGKIPSTIFRL----TQNL  148 (653)
Q Consensus        79 L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p----~~~~~-~-~L~~L~Ls~n~l~~~ip~~~~~~----l~~L  148 (653)
                      .+++.++++|.+|..+...++|++|||++|.+++..+    ..+.. + +|++|+|++|.+++..+..+...    .++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4455555555555555555556666666665554443    22222 3 45555555555543333322221    1444


Q ss_pred             cEEEccCCcCccc
Q 041562          149 ITFNVSNNSFTGL  161 (653)
Q Consensus       149 ~~L~Ls~n~l~~~  161 (653)
                      ++|++++|.+++.
T Consensus        83 ~~L~Ls~n~l~~~   95 (362)
T 3goz_A           83 TSLNLSGNFLSYK   95 (362)
T ss_dssp             CEEECCSSCGGGS
T ss_pred             cEEECcCCcCChH
Confidence            4444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.5e-23  Score=220.55  Aligned_cols=237  Identities=22%  Similarity=0.261  Sum_probs=140.6

Q ss_pred             cCCCCcEEEccCCcCcccCChhhh--hcCCCCCCEEEccCCc---CccCCCccC-------CCCCCCCEEEcccCCCCC-
Q 041562          144 LTQNLITFNVSNNSFTGLISWSAW--VDSFCSIRHLDLSNNR---FTGPVPLGL-------GSCSRLKTFRAGFNYLTG-  210 (653)
Q Consensus       144 ~l~~L~~L~Ls~n~l~~~~~~~~~--~~~l~~L~~L~Ls~n~---l~~~~~~~~-------~~l~~L~~L~L~~n~l~~-  210 (653)
                      .+++|++|++++|.+++..+..+.  ...+++|++|++++|.   +++.+|..+       ..+++|++|++++|.+++ 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            355666666666665554332221  2245666666666643   333334333       566677777777776665 


Q ss_pred             ---CccccccCCCCCCEEeccCCcCcccccccc----cCC---------CCCcEEEcccCcCC-cccC---ccccCCCCC
Q 041562          211 ---SLPDDIYTATSLEQLSLSFNHISGSIKNGI----VNL---------TSLRILELYSNSLT-GLIP---RDIGKLTNL  270 (653)
Q Consensus       211 ---~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l----~~l---------~~L~~L~L~~n~l~-~~~p---~~l~~l~~L  270 (653)
                         .+|..+..+++|++|+|++|.+.+..+..+    ..+         ++|++|++++|+++ +.++   ..+..+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               355566667777777777777654333322    233         67777777777765 2333   345566677


Q ss_pred             CeEEeecCcCcc-----cCCccccCCCCCcEEEccCCcCc----cccChhhccCCCCcCEEEccCCccccc----CCccC
Q 041562          271 ESLVLHNNSLSG-----SLPSSLKNCINLTLLNLQSNFFE----GDISVFNFSTLLKLRVLDLGSNLFTGS----LPITL  337 (653)
Q Consensus       271 ~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~----~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l  337 (653)
                      ++|++++|+++.     ..+..+..+++|++|++++|.++    +.++. .+..+++|++|++++|.+++.    ++..+
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l  268 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAF  268 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence            777777776652     23335666777777777777764    33443 456667777777777776654    34444


Q ss_pred             --cCCCCCCeEEccCccccc----cCchhh-cCCCCCCEEECCCCCCCCCC
Q 041562          338 --NSCKSLTAVNLARNQLEG----QISPGI-VALKSLSFLSLSNNSLTNIT  381 (653)
Q Consensus       338 --~~l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~Ls~n~l~~~~  381 (653)
                        +.+++|++|+|++|.+++    .+|..+ ..+++|++|++++|.++...
T Consensus       269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence              236777777777777765    355555 44677777777777766443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=3.9e-23  Score=215.15  Aligned_cols=176  Identities=23%  Similarity=0.238  Sum_probs=80.9

Q ss_pred             EcccCCCCCCccccccCCCCCCEEeccCCcCccccc----ccccCCC-CCcEEEcccCcCCcccCccccCC-----CCCC
Q 041562          202 RAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIK----NGIVNLT-SLRILELYSNSLTGLIPRDIGKL-----TNLE  271 (653)
Q Consensus       202 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~L~  271 (653)
                      +++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|++++..+..+..+     ++|+
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~   83 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT   83 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence            344444444444444444445555555555544333    3444444 45555555555554444333332     5555


Q ss_pred             eEEeecCcCcccCCccc----cCC-CCCcEEEccCCcCccccChhh----ccC-CCCcCEEEccCCcccccC----CccC
Q 041562          272 SLVLHNNSLSGSLPSSL----KNC-INLTLLNLQSNFFEGDISVFN----FST-LLKLRVLDLGSNLFTGSL----PITL  337 (653)
Q Consensus       272 ~L~L~~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~~i~~~~----~~~-l~~L~~L~L~~n~l~~~~----~~~l  337 (653)
                      +|+|++|.+++..+..+    ..+ ++|++|++++|.+++..+ ..    +.. .++|++|++++|.+++..    +..+
T Consensus        84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS-SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH-HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            55555555544333322    222 455555555555542211 11    222 235555555555555322    2222


Q ss_pred             cCCC-CCCeEEccCccccccCchhhc----CC-CCCCEEECCCCCCC
Q 041562          338 NSCK-SLTAVNLARNQLEGQISPGIV----AL-KSLSFLSLSNNSLT  378 (653)
Q Consensus       338 ~~l~-~L~~L~L~~n~l~~~~~~~l~----~l-~~L~~L~Ls~n~l~  378 (653)
                      ...+ +|++|++++|.+++..+..+.    .. ++|++|++++|.++
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            3333 555566665555544443222    23 35556666555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=2.3e-23  Score=214.84  Aligned_cols=224  Identities=15%  Similarity=0.194  Sum_probs=117.0

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCccc-CChhhhhcCCCCCCEE
Q 041562           99 HLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGL-ISWSAWVDSFCSIRHL  177 (653)
Q Consensus        99 ~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~l~~L~~L  177 (653)
                      .++.+|++++.+.......+..+++++|++++|.+.+..+. ++ .+++|++|++++|.+++. ++..+  ..+++|++|
T Consensus        48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~--~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGIL--SQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHH--TTBCCCSEE
T ss_pred             hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHH--hhCCCCCEE
Confidence            36677777766652111111115666666666666654443 22 356666666666665543 32222  245666666


Q ss_pred             EccCCcCccCCCccCCCCCCCCEEEcccC-CCCC-CccccccCCCCCCEEeccCC-cCccc-ccccccCCC-CCcEEEcc
Q 041562          178 DLSNNRFTGPVPLGLGSCSRLKTFRAGFN-YLTG-SLPDDIYTATSLEQLSLSFN-HISGS-IKNGIVNLT-SLRILELY  252 (653)
Q Consensus       178 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~Ls~n-~i~~~-~~~~l~~l~-~L~~L~L~  252 (653)
                      ++++|.+++..+..++.+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            66666655555555555666666666665 4443 24444555566666666666 55532 344455555 56666666


Q ss_pred             cC--cCC-cccCccccCCCCCCeEEeecCc-CcccCCccccCCCCCcEEEccCCc-CccccChhhccCCCCcCEEEccCC
Q 041562          253 SN--SLT-GLIPRDIGKLTNLESLVLHNNS-LSGSLPSSLKNCINLTLLNLQSNF-FEGDISVFNFSTLLKLRVLDLGSN  327 (653)
Q Consensus       253 ~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~-l~~~i~~~~~~~l~~L~~L~L~~n  327 (653)
                      +|  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. +. ......+..+++|++|++++|
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII-PETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC-GGGGGGGGGCTTCCEEECTTS
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC-HHHHHHHhcCCCCCEEeccCc
Confidence            55  333 2334444555556666665555 444444455555555555555553 11 111113444555555555555

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.5e-23  Score=220.43  Aligned_cols=248  Identities=24%  Similarity=0.328  Sum_probs=148.8

Q ss_pred             CccccccCCCCCCEEeccCCcCccccc----ccccCCCCCcEEEcccC---cCCcccCccc-------cCCCCCCeEEee
Q 041562          211 SLPDDIYTATSLEQLSLSFNHISGSIK----NGIVNLTSLRILELYSN---SLTGLIPRDI-------GKLTNLESLVLH  276 (653)
Q Consensus       211 ~~p~~l~~l~~L~~L~Ls~n~i~~~~~----~~l~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~L~  276 (653)
                      .++..+..+++|++|+|++|.+.+..+    ..+..+++|++|++++|   ++++.+|..+       ..+++|++|+|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            355566677788888888887776533    34667778888888775   3344445444       566777777777


Q ss_pred             cCcCcc----cCCccccCCCCCcEEEccCCcCccccCh---hhccCC---------CCcCEEEccCCccc-ccCC---cc
Q 041562          277 NNSLSG----SLPSSLKNCINLTLLNLQSNFFEGDISV---FNFSTL---------LKLRVLDLGSNLFT-GSLP---IT  336 (653)
Q Consensus       277 ~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~i~~---~~~~~l---------~~L~~L~L~~n~l~-~~~~---~~  336 (653)
                      +|.+.+    .+|..+..+++|++|++++|.+++..+.   ..+..+         ++|++|++++|.++ +.++   ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            777765    3555666677777777777766532111   012222         56666666666654 2222   23


Q ss_pred             CcCCCCCCeEEccCccccc-----cCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcc
Q 041562          337 LNSCKSLTAVNLARNQLEG-----QISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDND  411 (653)
Q Consensus       337 l~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  411 (653)
                      +..+++|++|++++|.++.     ..+..+..+++|++|+|++|.++...                      ...++.  
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g----------------------~~~l~~--  238 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----------------------SSALAI--  238 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----------------------HHHHHH--
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH----------------------HHHHHH--
Confidence            4445555555555555542     12224445555555555555542100                      011221  


Q ss_pred             cccCCCCCCCcCEEEccCCcCccc----chhhhcC--CccCCeeeCcCCcCcc----CCchhh-cCCCCCCEEEccCCcC
Q 041562          412 RLTSANGFKNLQVLGLAECKLKGQ----VPSWIGK--LKKLQVLDLSFNQLTG----SVPRFL-GNMSSLFHIDFSNNLI  480 (653)
Q Consensus       412 ~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~--l~~L~~L~Ls~n~l~~----~~~~~~-~~l~~L~~L~Ls~N~l  480 (653)
                         .+..+++|++|+|++|.+++.    ++..+..  +++|++|+|++|++++    .+|..+ .++++|++|++++|++
T Consensus       239 ---~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          239 ---ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             ---HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             ---HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence               123456777888888887754    4566633  7888888888888886    366666 5678888888888888


Q ss_pred             cccCC
Q 041562          481 SGEFP  485 (653)
Q Consensus       481 ~~~~p  485 (653)
                      ++..+
T Consensus       316 ~~~~~  320 (386)
T 2ca6_A          316 SEEDD  320 (386)
T ss_dssp             CTTSH
T ss_pred             Ccchh
Confidence            86654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=2.4e-21  Score=189.26  Aligned_cols=196  Identities=15%  Similarity=0.227  Sum_probs=115.1

Q ss_pred             CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCC-CCCCccccccCCCCCCEEeccC-CcCcccccccccCCCCCcEEE
Q 041562          173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNY-LTGSLPDDIYTATSLEQLSLSF-NHISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~  250 (653)
                      +|++|++++|++++..+..+..+++|++|++++|. +++..+..|..+++|++|++++ |.+++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            34455555555544444455555666666666664 5433334556666666666666 666654455666666666666


Q ss_pred             cccCcCCcccCccccCCCCCC---eEEeecC-cCcccCCccccCCCCCc-EEEccCCcCccccChhhccCCCCcCEEEcc
Q 041562          251 LYSNSLTGLIPRDIGKLTNLE---SLVLHNN-SLSGSLPSSLKNCINLT-LLNLQSNFFEGDISVFNFSTLLKLRVLDLG  325 (653)
Q Consensus       251 L~~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~  325 (653)
                      +++|++++ +|. ++.+++|+   +|++++| .+++..+..|.++++|+ +|++++|.++ .++...+.. ++|++|+++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence            66666664 443 66666666   6777776 66655555566666676 7777776666 555434444 566666666


Q ss_pred             CCc-ccccCCccCcCC-CCCCeEEccCccccccCchhhcCCCCCCEEECCCC
Q 041562          326 SNL-FTGSLPITLNSC-KSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNN  375 (653)
Q Consensus       326 ~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  375 (653)
                      +|. +++..+..+..+ ++|+.|++++|++++ +|..  .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            663 665445556666 666666666666653 2322  4555666665544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=4.6e-22  Score=202.45  Aligned_cols=136  Identities=17%  Similarity=0.189  Sum_probs=77.0

Q ss_pred             CCCcEEEccCCcCcccCChhh-hhcCCCCCCEEEccCCcCccCCCccC--CCCCCCCEEEcccCCCCCCcc----ccccC
Q 041562          146 QNLITFNVSNNSFTGLISWSA-WVDSFCSIRHLDLSNNRFTGPVPLGL--GSCSRLKTFRAGFNYLTGSLP----DDIYT  218 (653)
Q Consensus       146 ~~L~~L~Ls~n~l~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~  218 (653)
                      ..++.+.+.++.++...-..+ ....+++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            457788888777653211111 01124568888888888777777766  677777777777777765433    22344


Q ss_pred             CCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcc--c--CccccCCCCCCeEEeecCcCc
Q 041562          219 ATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGL--I--PRDIGKLTNLESLVLHNNSLS  281 (653)
Q Consensus       219 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~L~~n~l~  281 (653)
                      +++|++|++++|.+.+..+..+..+++|++|++++|++.+.  +  +..++.+++|++|++++|+++
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  210 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME  210 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence            55666666666665555555555555555555555554431  1  112234455555555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=5e-21  Score=187.04  Aligned_cols=189  Identities=22%  Similarity=0.259  Sum_probs=140.5

Q ss_pred             CCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCc-CcccccccccCCCCCcEEEccc-CcCCcccCccc
Q 041562          187 PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH-ISGSIKNGIVNLTSLRILELYS-NSLTGLIPRDI  264 (653)
Q Consensus       187 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l  264 (653)
                      .+|. +.  ++|++|++++|.+++..+..+..+++|++|++++|. ++...+..+.++++|++|++++ |++++..+..|
T Consensus        25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            4555 33  378888888888886666678888888888888886 7755556788888888888887 88887666778


Q ss_pred             cCCCCCCeEEeecCcCcccCCccccCCCCCc---EEEccCC-cCccccChhhccCCCCcC-EEEccCCcccccCCccCcC
Q 041562          265 GKLTNLESLVLHNNSLSGSLPSSLKNCINLT---LLNLQSN-FFEGDISVFNFSTLLKLR-VLDLGSNLFTGSLPITLNS  339 (653)
Q Consensus       265 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~i~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~  339 (653)
                      ..+++|++|++++|++++ +|. +..+++|+   +|++++| .++ .++...|..+++|+ +|++++|.++ .+|.....
T Consensus       102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~  177 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN  177 (239)
T ss_dssp             ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT
T ss_pred             CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHhhcC
Confidence            888888888888888875 565 77777777   8888888 776 45545677788888 8888888887 44443333


Q ss_pred             CCCCCeEEccCcc-ccccCchhhcCC-CCCCEEECCCCCCCCCCc
Q 041562          340 CKSLTAVNLARNQ-LEGQISPGIVAL-KSLSFLSLSNNSLTNITG  382 (653)
Q Consensus       340 l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~  382 (653)
                      .++|++|++++|+ +++..+..+..+ ++|++|++++|+++.++.
T Consensus       178 ~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~  222 (239)
T 2xwt_C          178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS  222 (239)
T ss_dssp             TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred             CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence            3778888888884 776666667777 788888888887776553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.4e-20  Score=183.54  Aligned_cols=178  Identities=22%  Similarity=0.262  Sum_probs=87.3

Q ss_pred             CCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEccc
Q 041562          174 IRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS  253 (653)
Q Consensus       174 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  253 (653)
                      .++++++++.++ .+|..+.  +++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            344555555444 2333332  3455555555555544444455555555555555555544444455555555555555


Q ss_pred             CcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccC
Q 041562          254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSL  333 (653)
Q Consensus       254 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~  333 (653)
                      |++++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            5555444444455555555555555555443334445555555555555554 222223444555555555555555444


Q ss_pred             CccCcCCCCCCeEEccCccccc
Q 041562          334 PITLNSCKSLTAVNLARNQLEG  355 (653)
Q Consensus       334 ~~~l~~l~~L~~L~L~~n~l~~  355 (653)
                      +..+..+++|+.|++++|.+.+
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCT
T ss_pred             HHHHhCCCCCCEEEeeCCceeC
Confidence            4444445555555555555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.1e-20  Score=191.83  Aligned_cols=193  Identities=25%  Similarity=0.329  Sum_probs=108.9

Q ss_pred             CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562          171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  250 (653)
                      +++|++|++++|.++. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+.  ..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            4455555555555542 22 355555566666665555532 22 55566666666666665532  2455666666666


Q ss_pred             cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562          251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      +++|++++. + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++  .+..+++|+.|++++|.++
T Consensus       114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LT--PLANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Ch--hhcCCCCCCEEECCCCccC
Confidence            666666543 2 25566666666666666653322  5566666666666666652 33  2556666666666666665


Q ss_pred             ccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCC
Q 041562          331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNI  380 (653)
Q Consensus       331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  380 (653)
                      +..+  +..+++|++|++++|++++..  .+..+++|++|++++|.++..
T Consensus       187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred             cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence            4322  555666666666666665433  256666666666666666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=2.1e-20  Score=189.69  Aligned_cols=147  Identities=23%  Similarity=0.351  Sum_probs=75.5

Q ss_pred             CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562          171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  250 (653)
                      +++|++|++++|.+++.  ..+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus        84 l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~  157 (308)
T 1h6u_A           84 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLS  157 (308)
T ss_dssp             CCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred             CCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEE
Confidence            44444444444444321  134444555555555555443 22 24555555555555555553222  55555555666


Q ss_pred             cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562          251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      +++|++++..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|.+++ ++  .+..+++|+.|++++|.++
T Consensus       158 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          158 IGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-VS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CG--GGTTCTTCCEEEEEEEEEE
T ss_pred             ccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc-cc--cccCCCCCCEEEccCCeee
Confidence            65555554322  5555666666666666553322  5556666666666666653 22  2455666666666666655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=2.6e-21  Score=210.78  Aligned_cols=203  Identities=24%  Similarity=0.321  Sum_probs=124.4

Q ss_pred             CCCCCCCCc-----cccce-EeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccCCCcCEEEc
Q 041562           55 NWSSSTDCC-----LWEGI-KCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDL  128 (653)
Q Consensus        55 ~W~~~~~~c-----~w~gv-~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~L  128 (653)
                      +|..+.++|     .|.|+ .|. .++++.|+++++++++ +|..+.  ++|++|+|++|.++ .+|.  ..++|++|+|
T Consensus        35 ~W~~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip~--~l~~L~~L~L  107 (571)
T 3cvr_A           35 KWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLPE--LPASLEYLDA  107 (571)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCCC--CCTTCCEEEC
T ss_pred             HHhccCCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-cccc--ccCCCCEEEc
Confidence            365455667     79999 785 3578889999988887 776663  78888888888887 5551  1277788888


Q ss_pred             cCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCC
Q 041562          129 SSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYL  208 (653)
Q Consensus       129 s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  208 (653)
                      ++|.+++ +|. +.   .+|++|++++|.+++..+      .+++|++|++++|.+++ +|.   .+++|++|++++|.+
T Consensus       108 s~N~l~~-ip~-l~---~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L  172 (571)
T 3cvr_A          108 CDNRLST-LPE-LP---ASLKHLDVDNNQLTMLPE------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL  172 (571)
T ss_dssp             CSSCCSC-CCC-CC---TTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred             cCCCCCC-cch-hh---cCCCEEECCCCcCCCCCC------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC
Confidence            8887774 666 22   267777777777776332      35667777777776664 443   455666666666666


Q ss_pred             CCCccccccCCCCCCEEeccCCcCcccccccccCCCCC-------cEEEcccCcCCcccCccccCCCCCCeEEeecCcCc
Q 041562          209 TGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSL-------RILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLS  281 (653)
Q Consensus       209 ~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  281 (653)
                      ++ +|. +.  ++|++|+|++|.|+ .+|. +..  +|       ++|++++|+++ .+|..+..+++|+.|+|++|.++
T Consensus       173 ~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          173 TF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             SC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred             CC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence            64 454 43  56666666666665 3444 332  34       55555555554 23444444555555555555554


Q ss_pred             ccCCccc
Q 041562          282 GSLPSSL  288 (653)
Q Consensus       282 ~~~p~~l  288 (653)
                      +.+|..+
T Consensus       244 ~~~p~~l  250 (571)
T 3cvr_A          244 SRIRESL  250 (571)
T ss_dssp             HHHHHHH
T ss_pred             CcCHHHH
Confidence            4444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=2e-20  Score=178.56  Aligned_cols=182  Identities=20%  Similarity=0.262  Sum_probs=101.1

Q ss_pred             CccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchH
Q 041562           62 CCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPST  140 (653)
Q Consensus        62 ~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~  140 (653)
                      .|.|.+|.|+..+           ++ .+|..+  .++|++|++++|.+++..+..+.. ++|++|++++|+++ .+|..
T Consensus         6 ~C~~~~v~c~~~~-----------l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~   70 (208)
T 2o6s_A            6 SCSGTTVECYSQG-----------RT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNG   70 (208)
T ss_dssp             EEETTEEECCSSC-----------CS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTT
T ss_pred             EECCCEEEecCCC-----------cc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChh
Confidence            3789999997432           22 233322  357888888888887655555544 67777777777776 55555


Q ss_pred             HHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCC
Q 041562          141 IFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTAT  220 (653)
Q Consensus       141 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  220 (653)
                      .+..+++|++|++++|.+++..+..+.  .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++
T Consensus        71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~  148 (208)
T 2o6s_A           71 VFNKLTSLTYLNLSTNQLQSLPNGVFD--KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT  148 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             hcCCCCCcCEEECCCCcCCccCHhHhc--CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence            555566666666666666554433221  455555555555555544444455555555555555555543333344455


Q ss_pred             CCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCC
Q 041562          221 SLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKL  267 (653)
Q Consensus       221 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  267 (653)
                      +|++|++++|.+.+       .+++|++|+++.|+++|.+|..++.+
T Consensus       149 ~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          149 SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            55555555554332       23344445555555555444444433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=5.5e-20  Score=190.34  Aligned_cols=202  Identities=20%  Similarity=0.189  Sum_probs=114.4

Q ss_pred             CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCccccc-ccccCCCCCcE-EEcc
Q 041562          175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIK-NGIVNLTSLRI-LELY  252 (653)
Q Consensus       175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~-L~L~  252 (653)
                      ++++.++++++ .+|..+  .+++++|++++|+++...+.+|.++++|++|+|++|.+.+.++ .+|.+++++++ +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45666666665 445444  2456666666666663333456666666666666666654444 34566666554 4445


Q ss_pred             cCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCC-cCccccChhhccCCC-CcCEEEccCCccc
Q 041562          253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN-FFEGDISVFNFSTLL-KLRVLDLGSNLFT  330 (653)
Q Consensus       253 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~i~~~~~~~l~-~L~~L~L~~n~l~  330 (653)
                      .|+++...|..|..+++|++|++++|++.+..+..+....++..|++.++ .+. .++...|..+. .++.|++++|.++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccccc
Confidence            56666665666667777777777777766554444555556666666543 333 44443444443 4666666666666


Q ss_pred             ccCCccCcCCCCCCeEEccC-ccccccCchhhcCCCCCCEEECCCCCCCCCC
Q 041562          331 GSLPITLNSCKSLTAVNLAR-NQLEGQISPGIVALKSLSFLSLSNNSLTNIT  381 (653)
Q Consensus       331 ~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  381 (653)
                      . ++.......+|+++++.+ |.++...+..|..+++|++|++++|+++.++
T Consensus       168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp  218 (350)
T 4ay9_X          168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  218 (350)
T ss_dssp             E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred             C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence            3 333333445566666654 4444332334556666666666666665544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.2e-19  Score=187.94  Aligned_cols=105  Identities=12%  Similarity=0.119  Sum_probs=50.4

Q ss_pred             CEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCE-EEc
Q 041562          101 SHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRH-LDL  179 (653)
Q Consensus       101 ~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~-L~L  179 (653)
                      ++++.++++++ .+|..+ .+++++|+|++|+|+ .+|...|..+++|++|+|++|.+.+.++...+. +++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l-~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~-~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS-NLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC-CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBC-SCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc-CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhh-cchhhhhhhcc
Confidence            45666666665 344433 145566666666665 555555555555555555555554443332211 3333332 333


Q ss_pred             cCCcCccCCCccCCCCCCCCEEEcccCCCC
Q 041562          180 SNNRFTGPVPLGLGSCSRLKTFRAGFNYLT  209 (653)
Q Consensus       180 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  209 (653)
                      +.|+++...|..|..+++|++|++++|.++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred             cCCcccccCchhhhhccccccccccccccc
Confidence            334444444444444444444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.4e-19  Score=172.57  Aligned_cols=160  Identities=25%  Similarity=0.205  Sum_probs=81.5

Q ss_pred             CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcc
Q 041562          173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY  252 (653)
Q Consensus       173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  252 (653)
                      +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            45555555555554444444555555555555555553333334555555555555555554444445555555555555


Q ss_pred             cCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccccc
Q 041562          253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGS  332 (653)
Q Consensus       253 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~  332 (653)
                      +|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+        .+++|+.|+++.|.++|.
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTTT
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCce
Confidence            555554444445555555555555555554444445555555555555554432        223445555555555555


Q ss_pred             CCccCcCC
Q 041562          333 LPITLNSC  340 (653)
Q Consensus       333 ~~~~l~~l  340 (653)
                      +|.+++.+
T Consensus       181 ip~~~~~l  188 (208)
T 2o6s_A          181 VRNSAGSV  188 (208)
T ss_dssp             BBCTTSSB
T ss_pred             eeccCccc
Confidence            55544433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=9e-19  Score=190.79  Aligned_cols=166  Identities=25%  Similarity=0.339  Sum_probs=82.8

Q ss_pred             CCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEc
Q 041562          172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILEL  251 (653)
Q Consensus       172 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  251 (653)
                      ++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|++++|.+++ +|.   .+++|++|++
T Consensus        80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence            34444444444444 233   234445555555554443 443 332  45555555555543 333   3455555555


Q ss_pred             ccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCc-------CEEEc
Q 041562          252 YSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKL-------RVLDL  324 (653)
Q Consensus       252 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L-------~~L~L  324 (653)
                      ++|++++ +|.   .+++|++|+|++|.+++ +|. +.  ++|+.|++++|.++ .+|.  +..  +|       +.|++
T Consensus       148 s~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~L  214 (571)
T 3cvr_A          148 DNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRC  214 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC--CC----------CCEEEEC
T ss_pred             CCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEec
Confidence            5555553 332   34455555555555553 443 33  55555555555555 3442  222  34       66666


Q ss_pred             cCCcccccCCccCcCCCCCCeEEccCccccccCchhhcC
Q 041562          325 GSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA  363 (653)
Q Consensus       325 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  363 (653)
                      ++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..
T Consensus       215 s~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             CCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            666666 45555555666666666666666666555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=1.5e-19  Score=173.85  Aligned_cols=138  Identities=21%  Similarity=0.209  Sum_probs=109.6

Q ss_pred             CCcCEEEccCCcCcccch-hhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccc
Q 041562          420 KNLQVLGLAECKLKGQVP-SWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQ  498 (653)
Q Consensus       420 ~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  498 (653)
                      ..+++|++++|++++..+ ..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..++      
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------  105 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE------  105 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS------
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc------
Confidence            346778888888876544 4577888888888888888877777788888888888888888866666665543      


Q ss_pred             ccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEe
Q 041562          499 DKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMD  578 (653)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~Ld  578 (653)
                                                                        .|++|+|++|.+++..|..|..+++|++|+
T Consensus       106 --------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A          106 --------------------------------------------------SLKTLMLRSNRITCVGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             --------------------------------------------------SCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred             --------------------------------------------------CCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence                                                              677888888888888888888888888888


Q ss_pred             CCCCeeeeecCcccccCCCCCeeecCCCcccccCC
Q 041562          579 LSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP  613 (653)
Q Consensus       579 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  613 (653)
                      |++|++++..|..+..+++|++|++++|++.+..+
T Consensus       136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            88888887778888888888888888888887655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=2.9e-18  Score=165.92  Aligned_cols=163  Identities=23%  Similarity=0.279  Sum_probs=98.9

Q ss_pred             CCCCCCCCccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCC
Q 041562           55 NWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHF  133 (653)
Q Consensus        55 ~W~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l  133 (653)
                      .|..+...|+|.+|.|...+           + +.+|..+.  ++|++|+|++|.+++..|..+.. ++|++|+|++|.+
T Consensus        11 ~~~~~~~~Cs~~~v~c~~~~-----------l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l   76 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRSKR-----------H-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL   76 (229)
T ss_dssp             CCCCTTCEEETTEEECTTSC-----------C-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccCCCCCEEeCCEeEccCCC-----------c-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence            34457888999999996321           2 24444333  78888888888888776766655 6677777777776


Q ss_pred             CCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCcc
Q 041562          134 QGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP  213 (653)
Q Consensus       134 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  213 (653)
                      + .+|...+..+++|++|+|++|.+++.                          .+..+..+++|++|++++|.++ .+|
T Consensus        77 ~-~i~~~~~~~l~~L~~L~Ls~N~l~~l--------------------------~~~~~~~l~~L~~L~Ls~N~l~-~lp  128 (229)
T 3e6j_A           77 G-ALPVGVFDSLTQLTVLDLGTNQLTVL--------------------------PSAVFDRLVHLKELFMCCNKLT-ELP  128 (229)
T ss_dssp             C-CCCTTTTTTCTTCCEEECCSSCCCCC--------------------------CTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred             C-CcChhhcccCCCcCEEECCCCcCCcc--------------------------ChhHhCcchhhCeEeccCCccc-ccC
Confidence            5 55555555555555555555555443                          3334445555555555555555 455


Q ss_pred             ccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcc
Q 041562          214 DDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGL  259 (653)
Q Consensus       214 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  259 (653)
                      ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+...
T Consensus       129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            5555556666666666666544445555666666666666665543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=5.9e-18  Score=162.64  Aligned_cols=117  Identities=21%  Similarity=0.235  Sum_probs=62.2

Q ss_pred             CCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCe
Q 041562          193 GSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLES  272 (653)
Q Consensus       193 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  272 (653)
                      ..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|++++|++++..|..|..+++|++
T Consensus        54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  133 (220)
T 2v70_A           54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL  133 (220)
T ss_dssp             GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred             ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence            33444444444444444333334444555555555555555444444555555555555555555555555555556666


Q ss_pred             EEeecCcCcccCCccccCCCCCcEEEccCCcCccccC
Q 041562          273 LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDIS  309 (653)
Q Consensus       273 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~  309 (653)
                      |+|++|++++..|..+..+++|++|++++|.+.++.+
T Consensus       134 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          134 LSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             EECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             EECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            6666666655555556666666666666666554433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=1e-17  Score=168.33  Aligned_cols=169  Identities=25%  Similarity=0.312  Sum_probs=86.4

Q ss_pred             CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562          171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  250 (653)
                      +++|++|++++|.+... + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+ + ..+..+++|++|+
T Consensus        45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEE
Confidence            44555555555555432 2 24555555555555555553322  5555555666665555553 2 2255555555555


Q ss_pred             cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562          251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      +++|++++.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|.+++ ++  .+..+++|+.|++++|.++
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV--PLAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-ch--hhcCCCccCEEECCCCcCC
Confidence            555555543  2455555555555555555533  345555555555555555542 22  1445555555555555554


Q ss_pred             ccCCccCcCCCCCCeEEccCcccc
Q 041562          331 GSLPITLNSCKSLTAVNLARNQLE  354 (653)
Q Consensus       331 ~~~~~~l~~l~~L~~L~L~~n~l~  354 (653)
                      + ++ .+..+++|+.|++++|.+.
T Consensus       192 ~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          192 D-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             B-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             C-Ch-hhccCCCCCEEECcCCccc
Confidence            3 22 2444455555555555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=5.7e-18  Score=170.22  Aligned_cols=170  Identities=27%  Similarity=0.355  Sum_probs=115.9

Q ss_pred             CCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCE
Q 041562          145 TQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQ  224 (653)
Q Consensus       145 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  224 (653)
                      +++|++|++++|.+.....    ...+++|++|++++|.+++..+  +..+++|++|++++|.+++ +| .+..+++|++
T Consensus        45 l~~L~~L~l~~~~i~~~~~----~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~  116 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             cCcccEEEccCCCcccChh----HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence            5556666666666655422    2246667777777776665433  6677777777777777664 33 3677777777


Q ss_pred             EeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcC
Q 041562          225 LSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFF  304 (653)
Q Consensus       225 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  304 (653)
                      |++++|.+.+.  ..+..+++|++|++++|++++.  ..++.+++|++|++++|++++..+  +..+++|++|++++|.+
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence            77777777643  4567777777777777777754  467777788888888887775433  77777888888888877


Q ss_pred             ccccChhhccCCCCcCEEEccCCcccc
Q 041562          305 EGDISVFNFSTLLKLRVLDLGSNLFTG  331 (653)
Q Consensus       305 ~~~i~~~~~~~l~~L~~L~L~~n~l~~  331 (653)
                      + .++  .+..+++|+.|++++|.++.
T Consensus       191 ~-~l~--~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          191 S-DLR--ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             C-BCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred             C-CCh--hhccCCCCCEEECcCCcccC
Confidence            6 344  46777888888888887764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.75  E-value=1.3e-19  Score=204.84  Aligned_cols=214  Identities=22%  Similarity=0.210  Sum_probs=74.7

Q ss_pred             CCHHhHHHHHHhhhcCCCC----CCCCCC-CCCCccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCC
Q 041562           34 CNQIDQDSLLSLGFNISSP----GLNWSS-STDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHN  108 (653)
Q Consensus        34 ~~~~~~~~ll~~k~~~~~~----~~~W~~-~~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n  108 (653)
                      ....++++++++.......    ...|.. .+..+.|.++.+. .++++.++|.++++... +..     .|+.++|+.|
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~  201 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS-TPLTPKIELFANGKDEA-NQA-----LLQHKKLSQY  201 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec-CCccceEEeeCCCCCcc-hhh-----HhhcCccCcc
Confidence            3456788999988665322    145643 4456789999886 47899999999888763 333     3444555555


Q ss_pred             CCCC---------CCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEE
Q 041562          109 RLSG---------EFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLD  178 (653)
Q Consensus       109 ~~~~---------~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~  178 (653)
                      .+.+         ..+..+.. +.|++|+|++|.+. .+|..++ .+++|++|+|++|.++ .+|..+.  .+++|++|+
T Consensus       202 ~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~--~l~~L~~L~  276 (727)
T 4b8c_D          202 SIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIK--NLSNLRVLD  276 (727)
T ss_dssp             --------------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGG--GGTTCCEEE
T ss_pred             cccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhh--CCCCCCEEe
Confidence            5442         12233332 55555555555555 4554444 2455555555555554 3333322  345555555


Q ss_pred             ccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCC-CcEEEcccCcCC
Q 041562          179 LSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTS-LRILELYSNSLT  257 (653)
Q Consensus       179 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~-L~~L~L~~n~l~  257 (653)
                      |++|.++ .+|..|+.+++|++|+|++|.++ .+|..|+.+++|++|+|++|.+.+.+|..+..+.. +..+++++|.++
T Consensus       277 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~  354 (727)
T 4b8c_D          277 LSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE  354 (727)
T ss_dssp             CTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             CcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence            5555554 44444555555555555555444 44444555555555555555554444444432211 112344444444


Q ss_pred             cccC
Q 041562          258 GLIP  261 (653)
Q Consensus       258 ~~~p  261 (653)
                      +.+|
T Consensus       355 ~~~p  358 (727)
T 4b8c_D          355 IPLP  358 (727)
T ss_dssp             CCCC
T ss_pred             CcCc
Confidence            4444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=2.2e-17  Score=158.62  Aligned_cols=133  Identities=20%  Similarity=0.271  Sum_probs=69.1

Q ss_pred             CCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEc
Q 041562          245 SLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDL  324 (653)
Q Consensus       245 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L  324 (653)
                      +|++|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|++++|.++ .++...|..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEEC
Confidence            4444444444444443334444555555555555554444444555555555555555554 333334455555555555


Q ss_pred             cCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562          325 GSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT  378 (653)
Q Consensus       325 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  378 (653)
                      ++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|++++|.+.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            555555544555555555555555555555544445555555666666665554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=2.8e-17  Score=157.85  Aligned_cols=107  Identities=27%  Similarity=0.304  Sum_probs=39.2

Q ss_pred             CCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeec
Q 041562          198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHN  277 (653)
Q Consensus       198 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  277 (653)
                      |+.|++++|.+++..+..|..+++|++|+|++|.+.+..|..|.++++|++|++++|+++...+..|..+++|++|+|++
T Consensus        34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~  113 (220)
T 2v9t_B           34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA  113 (220)
T ss_dssp             CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence            33333333333332222333333333333333333333333333333333333333333332222233333333333333


Q ss_pred             CcCcccCCccccCCCCCcEEEccCCcC
Q 041562          278 NSLSGSLPSSLKNCINLTLLNLQSNFF  304 (653)
Q Consensus       278 n~l~~~~p~~l~~l~~L~~L~L~~n~l  304 (653)
                      |++++..|..|..+++|++|++++|.+
T Consensus       114 N~l~~~~~~~~~~l~~L~~L~L~~N~l  140 (220)
T 2v9t_B          114 NKINCLRVDAFQDLHNLNLLSLYDNKL  140 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence            333333333333333333333333333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=7.5e-18  Score=185.61  Aligned_cols=190  Identities=22%  Similarity=0.302  Sum_probs=136.7

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEE
Q 041562           99 HLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLD  178 (653)
Q Consensus        99 ~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~  178 (653)
                      .+..++++.+.+.+..+ .-..++|+.|++++|.+. .+|.  +..+++|++|+|++|.+++..+    ...+++|++|+
T Consensus        22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~   93 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEE
T ss_pred             HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh----hccCCCCCEEE
Confidence            34555666666664433 112277888888888887 5553  4568888888888888887665    23678888888


Q ss_pred             ccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCc
Q 041562          179 LSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTG  258 (653)
Q Consensus       179 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  258 (653)
                      |++|.+++ + ..+..+++|+.|++++|.+.+ + ..+..+++|+.|+|++|.+.+.  ..+..+++|++|+|++|++.+
T Consensus        94 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           94 LDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             CcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            88888874 2 367788888888888888775 3 3577778888888888887754  567778888888888888876


Q ss_pred             ccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCcc
Q 041562          259 LIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEG  306 (653)
Q Consensus       259 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  306 (653)
                      ..|  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            655  77778888888888877753  357777888888888887764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=1.1e-17  Score=173.68  Aligned_cols=152  Identities=29%  Similarity=0.275  Sum_probs=71.1

Q ss_pred             CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCcccccc-CCCCCCEEeccCCcCcccccccccCCCCCcEEEccc
Q 041562          175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIY-TATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS  253 (653)
Q Consensus       175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  253 (653)
                      ++++++++.++ .+|..+.  +.++.|++++|.+++..+..+. .+++|++|+|++|.|.+..+..|.++++|++|+|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            34455554444 2333222  2344455555555443333343 455555555555555544444455555555555555


Q ss_pred             CcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhc---cCCCCcCEEEccCCccc
Q 041562          254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNF---STLLKLRVLDLGSNLFT  330 (653)
Q Consensus       254 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~---~~l~~L~~L~L~~n~l~  330 (653)
                      |++++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|.++ .++...+   ..+++|+.|+|++|.++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            5555444444555555555555555555444445555555555555555554 2332222   23444444444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.9e-17  Score=172.00  Aligned_cols=156  Identities=22%  Similarity=0.225  Sum_probs=91.8

Q ss_pred             CCEEEccCCcCccCCCccCC-CCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcc
Q 041562          174 IRHLDLSNNRFTGPVPLGLG-SCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY  252 (653)
Q Consensus       174 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  252 (653)
                      +++|+|++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|+|++|.+.+..+..|..+++|++|+|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            44555555555544444444 55666666666666655444556666666666666666665555556666666666666


Q ss_pred             cCcCCcccCccccCCCCCCeEEeecCcCcccCCccc---cCCCCCcEEEccCCcCccccChhhccCCCC--cCEEEccCC
Q 041562          253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL---KNCINLTLLNLQSNFFEGDISVFNFSTLLK--LRVLDLGSN  327 (653)
Q Consensus       253 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~--L~~L~L~~n  327 (653)
                      +|++++..|..|..+++|++|+|++|++++..+..+   ..+++|+.|++++|.++ .++...+..++.  ++.|++++|
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCC
Confidence            666666556666666666666666666664322223   45677777777777776 455445555554  355666666


Q ss_pred             ccc
Q 041562          328 LFT  330 (653)
Q Consensus       328 ~l~  330 (653)
                      .+.
T Consensus       200 ~~~  202 (361)
T 2xot_A          200 PLE  202 (361)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=3.1e-18  Score=160.89  Aligned_cols=132  Identities=22%  Similarity=0.307  Sum_probs=72.3

Q ss_pred             CEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCch-hhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccc
Q 041562          423 QVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPR-FLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKN  501 (653)
Q Consensus       423 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~  501 (653)
                      +.+++++++++ .+|..+..  +|++|++++|++.+..+. .+..+++|++|+|++|++++..|..|..++         
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------   78 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS---------   78 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc---------
Confidence            44555555554 34443322  555566666655544432 355556666666666665555554444332         


Q ss_pred             cccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCC
Q 041562          502 KANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSK  581 (653)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~  581 (653)
                                                                     .|++|+|++|++++..|..|+.+++|++|||++
T Consensus        79 -----------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  111 (192)
T 1w8a_A           79 -----------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             -----------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred             -----------------------------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence                                                           455556666666555555555566666666666


Q ss_pred             CeeeeecCcccccCCCCCeeecCCCcccccCC
Q 041562          582 NHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP  613 (653)
Q Consensus       582 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  613 (653)
                      |++++.+|..+..+++|++|++++|++.+..|
T Consensus       112 N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          112 NQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            66665555555556666666666666555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=2.1e-17  Score=182.00  Aligned_cols=190  Identities=24%  Similarity=0.302  Sum_probs=110.4

Q ss_pred             CcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEE
Q 041562          122 YIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTF  201 (653)
Q Consensus       122 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  201 (653)
                      .+..++++.+.+.+.++.   ..+++|+.|++++|.+.....    ...+++|++|+|++|.+++..+  +..+++|+.|
T Consensus        22 ~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l~~----l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L   92 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL   92 (605)
T ss_dssp             HHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCCTT----GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred             HHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCChH----HccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence            344455555655533332   235666666776666655432    2246666666666666665433  6666666666


Q ss_pred             EcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCc
Q 041562          202 RAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLS  281 (653)
Q Consensus       202 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  281 (653)
                      +|++|.+.+ +| .+..+++|++|+|++|.+.+.  ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+.
T Consensus        93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A           93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            666666653 22 456666666666666666542  3456666666666666666644  35566666666666666666


Q ss_pred             ccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccc
Q 041562          282 GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG  331 (653)
Q Consensus       282 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~  331 (653)
                      +..|  +..+++|+.|+|++|.+.+ ++  .+..+++|+.|+|++|.+.+
T Consensus       167 ~~~~--l~~l~~L~~L~Ls~N~i~~-l~--~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          167 DIVP--LAGLTKLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCB-CG--GGTTCTTCSEEECCSEEEEC
T ss_pred             Cchh--hccCCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEccCCcCcC
Confidence            4433  5566666666666666653 33  35556666666666666553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=1e-16  Score=155.07  Aligned_cols=151  Identities=26%  Similarity=0.289  Sum_probs=67.8

Q ss_pred             CCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEccc
Q 041562          174 IRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS  253 (653)
Q Consensus       174 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  253 (653)
                      -+.++++++.++ .+|..+.  ++|++|++++|.+++..|..+..+++|++|+|++|.+....+..+..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            445555555544 3333222  4445555555555444444444445555555555544433333344444455555554


Q ss_pred             CcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562          254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF  329 (653)
Q Consensus       254 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l  329 (653)
                      |++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCB
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCc
Confidence            4444443333444444444444444444 34444444444444444444444 22222333344444444444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=2.6e-17  Score=155.36  Aligned_cols=150  Identities=21%  Similarity=0.228  Sum_probs=66.4

Q ss_pred             CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562          171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  250 (653)
                      +++|++|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            445555555555554 223 3444555555555555333  112344444455555555444444444444444444444


Q ss_pred             cccCcCCcccCccccCCCCCCeEEeecCc-CcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562          251 LYSNSLTGLIPRDIGKLTNLESLVLHNNS-LSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF  329 (653)
Q Consensus       251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l  329 (653)
                      +++|++++..|..++.+++|++|++++|. ++ .+| .+..+++|++|++++|.+++ ++  .+..+++|++|++++|.+
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEECBC--
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEeeCccc
Confidence            44444444344444444444444444444 32 222 34444444444444444432 22  233344444444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3.9e-17  Score=154.13  Aligned_cols=153  Identities=18%  Similarity=0.198  Sum_probs=79.9

Q ss_pred             CCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCe
Q 041562          193 GSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLES  272 (653)
Q Consensus       193 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  272 (653)
                      +.+++|++|++++|.++ .+| .+..+++|++|++++|.+..  +..+..+++|++|++++|++++..+..++.+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            44556666666666665 344 45556666666666664432  234555555666666655555544555555555555


Q ss_pred             EEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcc
Q 041562          273 LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQ  352 (653)
Q Consensus       273 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  352 (653)
                      |++++|.+++..|..+..+++|++|++++|...+.++  .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence            5555555555445555555555555555554222333  34455555555555555543 22 34444444444444444


Q ss_pred             c
Q 041562          353 L  353 (653)
Q Consensus       353 l  353 (653)
                      +
T Consensus       193 i  193 (197)
T 4ezg_A          193 I  193 (197)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=4.9e-20  Score=201.85  Aligned_cols=104  Identities=28%  Similarity=0.397  Sum_probs=51.9

Q ss_pred             CCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeec
Q 041562          198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHN  277 (653)
Q Consensus       198 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  277 (653)
                      |+.|++++|.+++ +|. +..+++|++|+|++|.++ .+|..++.+++|++|++++|++++ +| .++.+++|++|+|++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            4445555555443 343 445555555555555554 444455555555555555555553 33 445555555555555


Q ss_pred             CcCcccC-CccccCCCCCcEEEccCCcCcc
Q 041562          278 NSLSGSL-PSSLKNCINLTLLNLQSNFFEG  306 (653)
Q Consensus       278 n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~  306 (653)
                      |++++.. |..++.+++|+.|++++|.+++
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            5555443 4455555555555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=2.7e-19  Score=195.99  Aligned_cols=63  Identities=22%  Similarity=0.249  Sum_probs=31.8

Q ss_pred             ccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeec-CcccccCCCCCeeecCCCcccccCC
Q 041562          549 LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEI-PVSLKRLHFLSAFNVAENNLRGSIP  613 (653)
Q Consensus       549 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~iP  613 (653)
                      .|+.|+|++|.+++ +| .++.+++|++|+|++|++++.+ |..+..+++|++|++++|++++.+|
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            34455555555553 34 4555555555555555555443 5555555555555555555554443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=4.3e-17  Score=161.18  Aligned_cols=168  Identities=29%  Similarity=0.336  Sum_probs=86.9

Q ss_pred             CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562          171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  250 (653)
                      +.+++.++++++.+++..  .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            344556666666665322  3555666666666666665 333 45556666666666666654332  55556666666


Q ss_pred             cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562          251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      +++|++++. |. +.. ++|++|++++|++++.  ..+..+++|++|++++|.+++ ++  .+..+++|+.|++++|.++
T Consensus        92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCC
T ss_pred             CCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCc
Confidence            666655542 22 222 5555555555555532  235555555555555555542 22  3444555555555555554


Q ss_pred             ccCCccCcCCCCCCeEEccCcccc
Q 041562          331 GSLPITLNSCKSLTAVNLARNQLE  354 (653)
Q Consensus       331 ~~~~~~l~~l~~L~~L~L~~n~l~  354 (653)
                      +.  ..+..+++|+.|++++|.+.
T Consensus       164 ~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          164 NT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             ch--HHhccCCCCCEEeCCCCccc
Confidence            33  33444444444444444444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=1.8e-16  Score=148.76  Aligned_cols=163  Identities=22%  Similarity=0.283  Sum_probs=121.4

Q ss_pred             CCcCEEEccCCcCcccchh-hhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccc
Q 041562          420 KNLQVLGLAECKLKGQVPS-WIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQ  498 (653)
Q Consensus       420 ~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  498 (653)
                      .++++|++++|++++..+. .+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..++      
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------  102 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH------  102 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT------
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCC------
Confidence            3788999999999866554 488999999999999999988899999999999999999999987776665544      


Q ss_pred             ccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEe
Q 041562          499 DKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMD  578 (653)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~Ld  578 (653)
                                                                        +|++|+|++|++++.+|..|..+++|++|+
T Consensus       103 --------------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A          103 --------------------------------------------------QLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             --------------------------------------------------TCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             --------------------------------------------------CCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence                                                              688999999999999999999999999999


Q ss_pred             CCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCCCCCCCCC
Q 041562          579 LSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSC  641 (653)
Q Consensus       579 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~~~~c  641 (653)
                      |++|.+++..+... -...++...+..+......|..  +....-..+..+..-|..+-...|
T Consensus       133 L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~~~~~c  192 (192)
T 1w8a_A          133 LASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSENSEGC  192 (192)
T ss_dssp             CTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC---CC
T ss_pred             eCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcCCCCCCCC
Confidence            99999998665211 0112333344455555555542  333334455666667765543444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1.1e-16  Score=158.08  Aligned_cols=168  Identities=24%  Similarity=0.324  Sum_probs=96.8

Q ss_pred             CCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEE
Q 041562          146 QNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQL  225 (653)
Q Consensus       146 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  225 (653)
                      .+++.+++++|.+++....    ..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|
T Consensus        19 ~~l~~l~l~~~~i~~~~~~----~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQ----KELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECH----HHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHhcCCCcccccch----hhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            3455555666666554421    135566666666666653 33 45666666666666666664332  6666666666


Q ss_pred             eccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCc
Q 041562          226 SLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFE  305 (653)
Q Consensus       226 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  305 (653)
                      ++++|.+++ ++. +.. ++|++|++++|++++.  ..++.+++|++|++++|++++. + .+..+++|++|++++|.++
T Consensus        91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred             ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence            666666653 222 222 6666666666666643  2466666666666666666643 2 4566666666666666665


Q ss_pred             cccChhhccCCCCcCEEEccCCcccc
Q 041562          306 GDISVFNFSTLLKLRVLDLGSNLFTG  331 (653)
Q Consensus       306 ~~i~~~~~~~l~~L~~L~L~~n~l~~  331 (653)
                      +.   ..+..+++|+.|++++|.+.+
T Consensus       164 ~~---~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          164 NT---GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             BC---TTSTTCCCCCEEEEEEEEEEC
T ss_pred             ch---HHhccCCCCCEEeCCCCcccC
Confidence            33   245566666666666666653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=2.2e-17  Score=186.59  Aligned_cols=222  Identities=21%  Similarity=0.223  Sum_probs=96.0

Q ss_pred             CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCE
Q 041562          121 NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKT  200 (653)
Q Consensus       121 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  200 (653)
                      +.++.|+|.+|.+. .++..      .|+.++|+.|.+.+                ++++.|.+. ..+..+..++.|+.
T Consensus       173 ~~~~~l~L~~n~~~-~~~~~------~l~~l~Ls~~~i~~----------------~~~~~n~~~-~~~~~~~~l~~L~~  228 (727)
T 4b8c_D          173 PLTPKIELFANGKD-EANQA------LLQHKKLSQYSIDE----------------DDDIENRMV-MPKDSKYDDQLWHA  228 (727)
T ss_dssp             -------------------------------------------------------------------------CCCCCCE
T ss_pred             CccceEEeeCCCCC-cchhh------HhhcCccCcccccC----------------cccccccee-cChhhhccCCCCcE
Confidence            56777888877776 33432      24445555554332                233344443 44566677777777


Q ss_pred             EEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcC
Q 041562          201 FRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSL  280 (653)
Q Consensus       201 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  280 (653)
                      |+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|+++ .+|..|+.+++|++|+|++|.+
T Consensus       229 L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l  305 (727)
T 4b8c_D          229 LDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV  305 (727)
T ss_dssp             EECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC
T ss_pred             EECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC
Confidence            777777776 56666667777777777777777 66777777777777777777777 5577777777777777777777


Q ss_pred             cccCCccccCCCCCcEEEccCCcCccccChhhccCC-CCcCEEEccCCcccccCCccCcCCCCCCeEEccCc--------
Q 041562          281 SGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTL-LKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARN--------  351 (653)
Q Consensus       281 ~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--------  351 (653)
                      + .+|..|+.+++|++|+|++|.+++.+|. .+..+ ..+..+++++|.+++.+|..      |+.|+++.|        
T Consensus       306 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~  377 (727)
T 4b8c_D          306 T-TLPWEFGNLCNLQFLGVEGNPLEKQFLK-ILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYD  377 (727)
T ss_dssp             C-CCCSSTTSCTTCCCEECTTSCCCSHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------
T ss_pred             C-ccChhhhcCCCccEEeCCCCccCCCChH-HHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccC
Confidence            6 6666677777777777777777765553 23221 11223567777777666643      344455544        


Q ss_pred             cccccCchhhcCCCCCCEEECCCCCC
Q 041562          352 QLEGQISPGIVALKSLSFLSLSNNSL  377 (653)
Q Consensus       352 ~l~~~~~~~l~~l~~L~~L~Ls~n~l  377 (653)
                      .+.+..+..+..+..+....+++|.+
T Consensus       378 ~l~~~~~~~~~~l~~~~~~~ls~Nil  403 (727)
T 4b8c_D          378 SLQQSTEHLATDLAKRTFTVLSYNTL  403 (727)
T ss_dssp             ------------------------CC
T ss_pred             Cccccccchhhcccccceeeeecccc
Confidence            22222222333444444455555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=2.3e-16  Score=144.70  Aligned_cols=137  Identities=21%  Similarity=0.246  Sum_probs=111.7

Q ss_pred             CCCcCEEEccCCcCc-ccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcc
Q 041562          419 FKNLQVLGLAECKLK-GQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPE  497 (653)
Q Consensus       419 ~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  497 (653)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|++.+.  ..+..+++|++|++++|++++.+|..+..+      
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------   94 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL------   94 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC------
Confidence            467899999999987 67888888899999999999998865  678889999999999999886555444333      


Q ss_pred             cccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCcccc-ccccccCCCCCe
Q 041562          498 QDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNI-PDQISQLTNLER  576 (653)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~  576 (653)
                                                                       + .|++|+|++|.+++.. +..+..+++|++
T Consensus        95 -------------------------------------------------~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~  124 (168)
T 2ell_A           95 -------------------------------------------------P-NLTHLNLSGNKLKDISTLEPLKKLECLKS  124 (168)
T ss_dssp             -------------------------------------------------T-TCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred             -------------------------------------------------C-CCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence                                                             3 7889999999998643 378899999999


Q ss_pred             EeCCCCeeeeecC---cccccCCCCCeeecCCCcccccCCC
Q 041562          577 MDLSKNHLSGEIP---VSLKRLHFLSAFNVAENNLRGSIPS  614 (653)
Q Consensus       577 LdLs~N~l~~~ip---~~l~~l~~L~~L~ls~N~l~g~iP~  614 (653)
                      |++++|++++..+   ..+..+++|++|++++|.+. .+|.
T Consensus       125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            9999999985544   47888999999999999886 5554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=1.7e-16  Score=162.63  Aligned_cols=291  Identities=13%  Similarity=0.071  Sum_probs=152.0

Q ss_pred             CCCCCEEeccCCcCcccccccccC-CCCCcEEEcccCcCC--cccCccccCCCCCCeEEeecCcCcccCCccccC-----
Q 041562          219 ATSLEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLT--GLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKN-----  290 (653)
Q Consensus       219 l~~L~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-----  290 (653)
                      +.+++.|.++++- .......+.. +++|++|||++|++.  ...+   +.++.++.+.+..+.+.   +..|.+     
T Consensus        24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~---~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVP---AYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred             hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccccC---HHHhccccccc
Confidence            4567777776541 1111122333 566777777776665  1111   11222344444444222   223444     


Q ss_pred             ---CCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCC
Q 041562          291 ---CINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSL  367 (653)
Q Consensus       291 ---l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  367 (653)
                         +++|+.|++.+ .++ .|+...|.++++|+.+++++|.+....+..|.++.++..+.+..+....            
T Consensus        97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~------------  162 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR------------  162 (329)
T ss_dssp             EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH------------
T ss_pred             ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh------------
Confidence               66666666665 444 4554556666666666666665554445555554444444433321100            


Q ss_pred             CEEECCCCCCCCCCcchhhccCCCCCc-EEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccC
Q 041562          368 SFLSLSNNSLTNITGAIRILMGCKNLK-VLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKL  446 (653)
Q Consensus       368 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L  446 (653)
                              ....+..  ..+.+|..|+ .+.+....   .++.... ...-...+++.+.+.++-...........+++|
T Consensus       163 --------~~~~i~~--~~f~~~~~L~~~i~~~~~~---~l~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L  228 (329)
T 3sb4_A          163 --------FKNRWEH--FAFIEGEPLETTIQVGAMG---KLEDEIM-KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNL  228 (329)
T ss_dssp             --------TSTTTTT--SCEEESCCCEEEEEECTTC---CHHHHHH-HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTC
T ss_pred             --------ccccccc--cccccccccceeEEecCCC---cHHHHHh-hcccCccccceEEEeeeecHHHHHHHHHhcCCC
Confidence                    0000000  1122333333 22221110   0000000 000123455666666553322222222337888


Q ss_pred             CeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccc
Q 041562          447 QVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKI  526 (653)
Q Consensus       447 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (653)
                      +.++|++|+++...+..|.++++|+.+++.+| ++...+.+|.+++                                  
T Consensus       229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~----------------------------------  273 (329)
T 3sb4_A          229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG----------------------------------  273 (329)
T ss_dssp             CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT----------------------------------
T ss_pred             eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh----------------------------------
Confidence            88888888888666677888888888888887 6655556666655                                  


Q ss_pred             cccccccceeeeCChHHHhHHhccC-eeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeee
Q 041562          527 LTFHEQYTWKTTASAAVSLLRLLLH-MLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFN  602 (653)
Q Consensus       527 ~~~~~~~~l~g~ip~~l~~l~~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  602 (653)
                                            .|+ .+++.+ .++...+.+|.++++|+.+++++|+++..-+..|.++++|+.++
T Consensus       274 ----------------------~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          274 ----------------------RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ----------------------TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             ----------------------hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence                                  456 667766 56655667788888888888888888766666777788887775

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=4.7e-16  Score=159.34  Aligned_cols=218  Identities=12%  Similarity=0.145  Sum_probs=106.8

Q ss_pred             CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCc----CcccccccccCCCCC
Q 041562          171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH----ISGSIKNGIVNLTSL  246 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~----i~~~~~~~l~~l~~L  246 (653)
                      +++|++|++.+ .++......|.+|++|+.+++..|.+....+..|..+.++..+....+.    .......+|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            55666666655 5554445556666666666666666554444555555555555544321    111122334455555


Q ss_pred             c-EEEcccCcCCcccCccc----cCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCE
Q 041562          247 R-ILELYSNSLTGLIPRDI----GKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRV  321 (653)
Q Consensus       247 ~-~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~  321 (653)
                      + .+.+....   .++..+    ....+++.+.+.++-...........+++|+.+++++|.++ .++...|.++.+|+.
T Consensus       179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLK  254 (329)
T ss_dssp             EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCE
T ss_pred             ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCE
Confidence            5 33333211   111111    11234444444443211110000112555666666665555 455555666666666


Q ss_pred             EEccCCcccccCCccCcCCCCCC-eEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEE
Q 041562          322 LDLGSNLFTGSLPITLNSCKSLT-AVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLI  397 (653)
Q Consensus       322 L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~  397 (653)
                      +++.+| ++...+.+|.+|++|+ .+++.+ .++...+..|..+++|+.+++++|+++.++.  ..|.+|++|+.++
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~--~aF~~~~~L~~ly  327 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD--ELFGNGVPSKLIY  327 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT--TTTCTTCCCCEEE
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch--hhhcCCcchhhhc
Confidence            666555 4444445556666666 666655 4444445556666666666666666555443  3455666666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=4.5e-16  Score=139.62  Aligned_cols=129  Identities=20%  Similarity=0.229  Sum_probs=100.8

Q ss_pred             CCCcCEEEccCCcCc-ccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcc
Q 041562          419 FKNLQVLGLAECKLK-GQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPE  497 (653)
Q Consensus       419 ~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  497 (653)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|++.+.  ..+..+++|++|++++|++++.+|..+..+      
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l------   87 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKC------   87 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHC------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhC------
Confidence            467888888888887 67777778888888888888888865  667888888888888888876555443332      


Q ss_pred             cccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccc-cccccccCCCCCe
Q 041562          498 QDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGN-IPDQISQLTNLER  576 (653)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~  576 (653)
                                                                       + .|++|++++|.+++. .|..++.+++|++
T Consensus        88 -------------------------------------------------~-~L~~L~ls~N~i~~~~~~~~~~~l~~L~~  117 (149)
T 2je0_A           88 -------------------------------------------------P-NLTHLNLSGNKIKDLSTIEPLKKLENLKS  117 (149)
T ss_dssp             -------------------------------------------------T-TCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred             -------------------------------------------------C-CCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence                                                             2 688888999988864 3477888899999


Q ss_pred             EeCCCCeeeeecC---cccccCCCCCeeecCC
Q 041562          577 MDLSKNHLSGEIP---VSLKRLHFLSAFNVAE  605 (653)
Q Consensus       577 LdLs~N~l~~~ip---~~l~~l~~L~~L~ls~  605 (653)
                      |++++|++++..+   ..+..+++|++|++++
T Consensus       118 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          118 LDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999998886555   4678888898888864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=3.7e-15  Score=139.75  Aligned_cols=128  Identities=30%  Similarity=0.297  Sum_probs=84.5

Q ss_pred             CEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccccc
Q 041562          423 QVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNK  502 (653)
Q Consensus       423 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  502 (653)
                      +.++++++.++ .+|..+.  ++|++|++++|++. .+|..|..+++|++|++++|++++..+..|..++          
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~----------   78 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT----------   78 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT----------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC----------
Confidence            45666666666 4554332  46777777777776 5556677777777777777777655555554443          


Q ss_pred             ccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCC
Q 041562          503 ANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKN  582 (653)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N  582 (653)
                                                                    .|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus        79 ----------------------------------------------~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           79 ----------------------------------------------QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN  112 (193)
T ss_dssp             ----------------------------------------------TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             ----------------------------------------------CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence                                                          5666777777777666667777777777777777


Q ss_pred             eeeeecCcccccCCCCCeeecCCCcccc
Q 041562          583 HLSGEIPVSLKRLHFLSAFNVAENNLRG  610 (653)
Q Consensus       583 ~l~~~ip~~l~~l~~L~~L~ls~N~l~g  610 (653)
                      ++++..+..+..+++|++|++++|++.+
T Consensus       113 ~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          113 DISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCeeChhhhhcCccccEEEeCCCCeec
Confidence            7775444456677777777777777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.9e-15  Score=138.49  Aligned_cols=131  Identities=24%  Similarity=0.178  Sum_probs=63.4

Q ss_pred             CCCCEEEccCCcCc-cCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562          172 CSIRHLDLSNNRFT-GPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       172 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  250 (653)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45555555555555 44455555555555555555555533  3444555555555555555544444444455555555


Q ss_pred             cccCcCCccc-CccccCCCCCCeEEeecCcCcccCC---ccccCCCCCcEEEccCCcC
Q 041562          251 LYSNSLTGLI-PRDIGKLTNLESLVLHNNSLSGSLP---SSLKNCINLTLLNLQSNFF  304 (653)
Q Consensus       251 L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l  304 (653)
                      +++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            5555554321 1344444445555555444443222   2344444444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=3.2e-15  Score=138.29  Aligned_cols=134  Identities=22%  Similarity=0.221  Sum_probs=101.5

Q ss_pred             cCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccc
Q 041562          422 LQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKN  501 (653)
Q Consensus       422 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~  501 (653)
                      .+.+++++++++ .+|..+  .++|++|++++|++.+..+..+..+++|++|++++|++++..+..|..++         
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------   76 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT---------   76 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT---------
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC---------
Confidence            466777777777 455433  36788888888888876666778888888888888888755544444433         


Q ss_pred             cccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCC
Q 041562          502 KANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSK  581 (653)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~  581 (653)
                                                                     .|++|+|++|.+++..+..+..+++|++|++++
T Consensus        77 -----------------------------------------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  109 (177)
T 2o6r_A           77 -----------------------------------------------KLTILYLHENKLQSLPNGVFDKLTQLKELALDT  109 (177)
T ss_dssp             -----------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             -----------------------------------------------ccCEEECCCCCccccCHHHhhCCcccCEEECcC
Confidence                                                           677888888888877777788888888888888


Q ss_pred             CeeeeecCcccccCCCCCeeecCCCcccccCCC
Q 041562          582 NHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPS  614 (653)
Q Consensus       582 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~  614 (653)
                      |++++..+..+..+++|++|++++|++.+..|.
T Consensus       110 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A          110 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            888865555567788888888888888877663

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1.8e-15  Score=135.66  Aligned_cols=128  Identities=25%  Similarity=0.215  Sum_probs=77.3

Q ss_pred             CCCCCEEEccCCcCc-cCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEE
Q 041562          171 FCSIRHLDLSNNRFT-GPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL  249 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  249 (653)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            345666666666666 55666666666666666666666644  455666666666666666665555555566666666


Q ss_pred             EcccCcCCcc-cCccccCCCCCCeEEeecCcCcccCC---ccccCCCCCcEEEcc
Q 041562          250 ELYSNSLTGL-IPRDIGKLTNLESLVLHNNSLSGSLP---SSLKNCINLTLLNLQ  300 (653)
Q Consensus       250 ~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~  300 (653)
                      ++++|++++. .+..++.+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            6666666543 22455566666666666666654433   245555555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=2.7e-14  Score=133.82  Aligned_cols=128  Identities=25%  Similarity=0.287  Sum_probs=77.7

Q ss_pred             CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccC
Q 041562          175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSN  254 (653)
Q Consensus       175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  254 (653)
                      ++++++++.++ .+|..+.  ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45666666655 3444332  45666666666665 45556666666666666666666555556666666666666666


Q ss_pred             cCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCcc
Q 041562          255 SLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEG  306 (653)
Q Consensus       255 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  306 (653)
                      ++++..|..|..+++|++|+|++|.++...+..+..+++|+.|++++|.+..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            6666555566666666666666666664444455666666666666665543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.56  E-value=2.3e-13  Score=142.36  Aligned_cols=267  Identities=12%  Similarity=0.121  Sum_probs=196.8

Q ss_pred             CCCCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCC
Q 041562           96 NLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIR  175 (653)
Q Consensus        96 ~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~  175 (653)
                      .+..++.+.+.. .++......|...+|+.+++..+ ++ .|+...|..+ +|+.+++.. .++...+..+  ..+++|+
T Consensus       111 ~~~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF--~~c~~L~  183 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIF--YYCYNLK  183 (401)
T ss_dssp             ECSSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTT--TTCTTCC
T ss_pred             ecCCccEEEECC-ccCEehHhhcccCCccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHh--hCcccCC
Confidence            346777777764 34444555666677888888766 55 6777777764 688888875 4544433333  2688888


Q ss_pred             EEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCc
Q 041562          176 HLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNS  255 (653)
Q Consensus       176 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  255 (653)
                      .+++++|.++......|. +.+|+.+.+..+ ++..-..+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~  258 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG  258 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred             eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence            898888888755555555 688888888754 55455567888889999998875 55455566766 789999984 55


Q ss_pred             CCcccCccccCCCCCCeEEeecCcCc-----ccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562          256 LTGLIPRDIGKLTNLESLVLHNNSLS-----GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       256 l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      ++......|.++++|+.+++.++.+.     ...+..|.+|++|+.+++.. .++ .++...|.++.+|+.+++..+ ++
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~  335 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VT  335 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CC
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-cc
Confidence            66566678889999999999887764     35566788999999999984 465 677778999999999999655 66


Q ss_pred             ccCCccCcCCCCCCeEEccCccccccCchhhcCCC-CCCEEECCCCCCC
Q 041562          331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALK-SLSFLSLSNNSLT  378 (653)
Q Consensus       331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~  378 (653)
                      .....+|.++ +|+.+++.+|.+.......|..++ .++.|++..+.+.
T Consensus       336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            5667788999 999999999988766666677774 7888988876544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=5.9e-14  Score=129.75  Aligned_cols=130  Identities=27%  Similarity=0.263  Sum_probs=63.8

Q ss_pred             CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccC
Q 041562          175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSN  254 (653)
Q Consensus       175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  254 (653)
                      +.+++++++++ .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            44555555444 222222  134555555555554333334445555555555555555443344455555555555555


Q ss_pred             cCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccc
Q 041562          255 SLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGD  307 (653)
Q Consensus       255 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  307 (653)
                      ++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            55544444445555555555555555543333344555555555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.54  E-value=4.5e-13  Score=140.23  Aligned_cols=265  Identities=12%  Similarity=0.193  Sum_probs=206.9

Q ss_pred             CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCE
Q 041562          121 NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKT  200 (653)
Q Consensus       121 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  200 (653)
                      ..++.+.+.+ .++ .|+...|..+ +|+.+++..+ ++......+.  + ++|+.+.+.. .++......|.+|++|+.
T Consensus       113 ~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~--~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          113 KGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFF--N-STVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             SSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTT--T-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             CCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcC--C-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence            6777888765 355 7778888775 7999999877 5544433332  3 5799999986 666667788999999999


Q ss_pred             EEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcC
Q 041562          201 FRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSL  280 (653)
Q Consensus       201 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  280 (653)
                      +++..|.++ .++.....+++|+.+.+..+ +......+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+
T Consensus       185 l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i  259 (401)
T 4fdw_A          185 ADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV  259 (401)
T ss_dssp             EECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred             eecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence            999999998 45554445799999999855 66566788999999999999875 55555567777 799999995 456


Q ss_pred             cccCCccccCCCCCcEEEccCCcCc----cccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccccc
Q 041562          281 SGSLPSSLKNCINLTLLNLQSNFFE----GDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQ  356 (653)
Q Consensus       281 ~~~~p~~l~~l~~L~~L~L~~n~l~----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  356 (653)
                      +......|.+|++|+.+++.+|.+.    ..++...|..+++|+.+++.+ .++......|.+|++|+.+.+..+ ++..
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I  337 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI  337 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence            6566788999999999999988764    136667899999999999994 577667788999999999999665 6656


Q ss_pred             CchhhcCCCCCCEEECCCCCCCCCCcchhhccCCC-CCcEEECCCCCC
Q 041562          357 ISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCK-NLKVLIIPLNFM  403 (653)
Q Consensus       357 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~-~L~~L~l~~n~~  403 (653)
                      ....|..+ +|+.+++.+|.+..+..  ..+.+++ .++.+.+..+.+
T Consensus       338 ~~~aF~~~-~L~~l~l~~n~~~~l~~--~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          338 NFSAFNNT-GIKEVKVEGTTPPQVFE--KVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CTTSSSSS-CCCEEEECCSSCCBCCC--SSCCCSCTTCCEEEECGGGH
T ss_pred             cHHhCCCC-CCCEEEEcCCCCccccc--ccccCCCCCccEEEeCHHHH
Confidence            67788888 99999999998877654  3456664 788888876643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=1.9e-14  Score=132.95  Aligned_cols=132  Identities=16%  Similarity=0.136  Sum_probs=99.1

Q ss_pred             CCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcc
Q 041562          418 GFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPE  497 (653)
Q Consensus       418 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  497 (653)
                      .+.+|++|++++|+++ .+|......++|++|++++|++++.  ..+..+++|++|++++|++++..+..+..+      
T Consensus        17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l------   87 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL------   87 (176)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC------
T ss_pred             CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC------
Confidence            4567888888888887 3454333344888888888888864  567888888889988888874433322322      


Q ss_pred             cccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCcccccc--ccccCCCCC
Q 041562          498 QDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPD--QISQLTNLE  575 (653)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~  575 (653)
                                                                       + .|++|+|++|.++ .+|.  .+..+++|+
T Consensus        88 -------------------------------------------------~-~L~~L~L~~N~i~-~~~~~~~l~~l~~L~  116 (176)
T 1a9n_A           88 -------------------------------------------------P-DLTELILTNNSLV-ELGDLDPLASLKSLT  116 (176)
T ss_dssp             -------------------------------------------------T-TCCEEECCSCCCC-CGGGGGGGGGCTTCC
T ss_pred             -------------------------------------------------C-CCCEEECCCCcCC-cchhhHhhhcCCCCC
Confidence                                                             2 6888999999886 4565  788899999


Q ss_pred             eEeCCCCeeeeecCcc----cccCCCCCeeecCCCcccc
Q 041562          576 RMDLSKNHLSGEIPVS----LKRLHFLSAFNVAENNLRG  610 (653)
Q Consensus       576 ~LdLs~N~l~~~ip~~----l~~l~~L~~L~ls~N~l~g  610 (653)
                      .|++++|.++ .+|..    +..++.|++||+++|....
T Consensus       117 ~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          117 YLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999999998 56664    7888999999999998764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=9.3e-14  Score=128.25  Aligned_cols=41  Identities=29%  Similarity=0.293  Sum_probs=15.3

Q ss_pred             ccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcC
Q 041562          240 IVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSL  280 (653)
Q Consensus       240 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  280 (653)
                      +..+++|++|++++|++++..+..++.+++|++|++++|.+
T Consensus        60 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i  100 (176)
T 1a9n_A           60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL  100 (176)
T ss_dssp             CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred             cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence            33333444444444443322222223334444444444433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.44  E-value=6.8e-12  Score=131.66  Aligned_cols=63  Identities=8%  Similarity=0.205  Sum_probs=28.3

Q ss_pred             CCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEE
Q 041562          136 KIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFR  202 (653)
Q Consensus       136 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  202 (653)
                      .|....|..+.+|+.+.+..+ ++......  +.++++|+.+++..+ ++......|.++.+|+.+.
T Consensus        61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~a--F~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~  123 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPST-VREIGEFA--FENCSKLEIINIPDS-VKMIGRCTFSGCYALKSIL  123 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCTT-CCEECTTT--TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCC
T ss_pred             EhHHHHhhCCCCceEEEeCCC-ccCcchhH--hhCCCCCcEEEeCCC-ceEccchhhcccccchhhc
Confidence            455555666666666666532 33222111  114555555555432 3222333444444444433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.43  E-value=6.9e-12  Score=131.60  Aligned_cols=326  Identities=12%  Similarity=0.096  Sum_probs=164.9

Q ss_pred             CccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCC
Q 041562          115 PSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLG  193 (653)
Q Consensus       115 p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  193 (653)
                      ..+|.. .+|+.+++..+ ++ .|+...|..+++|+.+++..+ ++.... .. +..+.+|+.+.+..+ +.......|.
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~a-F~~c~~L~~i~~p~~-l~~i~~~aF~  137 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGR-CT-FSGCYALKSILLPLM-LKSIGVEAFK  137 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECT-TT-TTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             HHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccc-hh-hcccccchhhcccCc-eeeecceeee
Confidence            344544 78888888743 66 778888888888988888755 332222 22 225777777666543 3333344555


Q ss_pred             CCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeE
Q 041562          194 SCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESL  273 (653)
Q Consensus       194 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  273 (653)
                      ++..++.........  .-..+|.++++|+.+.+..+. ......+|.++.+|+.+++..+ ++......|.++..|+.+
T Consensus       138 ~~~~~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          138 GCDFKEITIPEGVTV--IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM  213 (394)
T ss_dssp             TCCCSEEECCTTCCE--ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred             cccccccccCccccc--cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence            554433332222111  223456666777777776543 2233455666666776666554 333334455666666666


Q ss_pred             EeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccc
Q 041562          274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL  353 (653)
Q Consensus       274 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  353 (653)
                      .+..+...  +........+|+.+.+.... + .+....+..+..++.+.+..+... .....+..+..++.+....+.+
T Consensus       214 ~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i  288 (394)
T 4fs7_A          214 EFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV  288 (394)
T ss_dssp             CCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE
T ss_pred             ecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee
Confidence            65554322  22233344556666554332 1 233334555566666665554332 3344455555555555544332


Q ss_pred             cccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCc
Q 041562          354 EGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLK  433 (653)
Q Consensus       354 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~  433 (653)
                      .   ...+..+.+|+.+.+..+ ++.+..                               .+|.++.+|+.+++.++ ++
T Consensus       289 ~---~~~F~~~~~L~~i~l~~~-i~~I~~-------------------------------~aF~~c~~L~~i~lp~~-v~  332 (394)
T 4fs7_A          289 P---EKTFYGCSSLTEVKLLDS-VKFIGE-------------------------------EAFESCTSLVSIDLPYL-VE  332 (394)
T ss_dssp             C---TTTTTTCTTCCEEEECTT-CCEECT-------------------------------TTTTTCTTCCEECCCTT-CC
T ss_pred             c---cccccccccccccccccc-cceech-------------------------------hhhcCCCCCCEEEeCCc-cc
Confidence            1   123444445555544332 222211                               12334445555555432 33


Q ss_pred             ccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 041562          434 GQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPAL  494 (653)
Q Consensus       434 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  494 (653)
                      ..-..+|.+|++|+.+++..+ +.......|.++++|+.+++..+ +. .+..+|.++++|
T Consensus       333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L  390 (394)
T 4fs7_A          333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKF  390 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEE
T ss_pred             EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCC
Confidence            233445556666666666544 44334455666666666666543 11 223445555444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=4.3e-13  Score=122.86  Aligned_cols=58  Identities=28%  Similarity=0.295  Sum_probs=28.6

Q ss_pred             cCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcc
Q 041562          422 LQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISG  482 (653)
Q Consensus       422 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  482 (653)
                      .+.+++++|.++ .+|..+  .++|++|+|++|++++..|..|..+++|++|+|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~   68 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV   68 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc
Confidence            345555555555 244333  1445555555555554444445555555555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=1.5e-15  Score=143.40  Aligned_cols=127  Identities=24%  Similarity=0.241  Sum_probs=70.1

Q ss_pred             cccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCC
Q 041562          239 GIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLK  318 (653)
Q Consensus       239 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~  318 (653)
                      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ ++  .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH--HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC--ccccCCC
Confidence            55555556666666555554 34 5555556666666666555 445444555556666666665553 33  3455556


Q ss_pred             cCEEEccCCcccccCC-ccCcCCCCCCeEEccCccccccCch----------hhcCCCCCCEEE
Q 041562          319 LRVLDLGSNLFTGSLP-ITLNSCKSLTAVNLARNQLEGQISP----------GIVALKSLSFLS  371 (653)
Q Consensus       319 L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~----------~l~~l~~L~~L~  371 (653)
                      |++|++++|.+++..+ ..+..+++|++|++++|.+.+..|.          .+..+++|+.|+
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            6666666665553211 2455566666666666666544332          255566666665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=2.1e-15  Score=142.35  Aligned_cols=159  Identities=21%  Similarity=0.254  Sum_probs=87.1

Q ss_pred             CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562          171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  250 (653)
                      ...++.++++.+.+++..|.                 ++ .+|..+..+++|++|++++|.+.+ +| .+..+++|++|+
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~-----------------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~   76 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPP-----------------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILS   76 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTT-----------------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEE
T ss_pred             cccccCcchheeEeccccCc-----------------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEE
Confidence            45666666666666655443                 11 222355555555555555555553 34 555556666666


Q ss_pred             cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562          251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      +++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|++|++++|.+++..+...+..+++|++|++++|.+.
T Consensus        77 l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           77 LGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            6666555 344445555566666666666653 33 35556666666666666652111124556666666666666665


Q ss_pred             ccCCcc----------CcCCCCCCeEEccCcccc
Q 041562          331 GSLPIT----------LNSCKSLTAVNLARNQLE  354 (653)
Q Consensus       331 ~~~~~~----------l~~l~~L~~L~L~~n~l~  354 (653)
                      +..|..          +..+++|+.|+  ++.++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          154 NDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             cccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            544332          55666777665  44443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=1.3e-12  Score=120.08  Aligned_cols=57  Identities=25%  Similarity=0.330  Sum_probs=32.3

Q ss_pred             CEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcc
Q 041562          423 QVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISG  482 (653)
Q Consensus       423 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  482 (653)
                      +.+++++|+++ .+|..+.  ++|++|+|++|++.+..|..|..+++|++|+|++|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~   71 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA   71 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc
Confidence            45666666665 4444332  556666666666655555555555556666666555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=4.6e-12  Score=115.98  Aligned_cols=86  Identities=31%  Similarity=0.281  Sum_probs=44.8

Q ss_pred             CCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEc
Q 041562          220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNL  299 (653)
Q Consensus       220 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  299 (653)
                      ++|++|+|++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            44555555555555444445555555555555555555444444455555555555555555444444555555555555


Q ss_pred             cCCcCc
Q 041562          300 QSNFFE  305 (653)
Q Consensus       300 ~~n~l~  305 (653)
                      ++|.+.
T Consensus       110 ~~N~~~  115 (170)
T 3g39_A          110 LNNPWD  115 (170)
T ss_dssp             CSSCBC
T ss_pred             CCCCCC
Confidence            555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=9.3e-12  Score=114.31  Aligned_cols=86  Identities=29%  Similarity=0.291  Sum_probs=41.3

Q ss_pred             CCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEc
Q 041562          220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNL  299 (653)
Q Consensus       220 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  299 (653)
                      ++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            44444444444444444444445555555555555554433333444555555555555554333333444555555555


Q ss_pred             cCCcCc
Q 041562          300 QSNFFE  305 (653)
Q Consensus       300 ~~n~l~  305 (653)
                      ++|.+.
T Consensus       113 ~~N~~~  118 (174)
T 2r9u_A          113 YNNPWD  118 (174)
T ss_dssp             CSSCBC
T ss_pred             CCCCcc
Confidence            555444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=1.1e-13  Score=143.43  Aligned_cols=137  Identities=19%  Similarity=0.224  Sum_probs=68.3

Q ss_pred             CCCCCEEECCCCCCCCCCCccccC------CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhh--
Q 041562           97 LTHLSHLNLSHNRLSGEFPSSLSS------NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWV--  168 (653)
Q Consensus        97 l~~L~~L~Ls~n~~~~~~p~~~~~------~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--  168 (653)
                      +++|++|+|++|.++......+..      ++|++|+|++|.+++.....+...+++|++|+|++|.++......+..  
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            356777777777776433322221      467777777776654433344444556677777777665433222211  


Q ss_pred             -cCCCCCCEEEccCCcCccC----CCccCCCCCCCCEEEcccCCCCCC----ccccccCCCCCCEEeccCCcCc
Q 041562          169 -DSFCSIRHLDLSNNRFTGP----VPLGLGSCSRLKTFRAGFNYLTGS----LPDDIYTATSLEQLSLSFNHIS  233 (653)
Q Consensus       169 -~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~i~  233 (653)
                       ...++|++|+|++|.++..    ++..+..+++|++|++++|.+++.    ++..+...++|++|+|++|.|+
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence             1345566666666665431    222223444455555555544421    1223333444444444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=3.3e-13  Score=139.79  Aligned_cols=164  Identities=18%  Similarity=0.186  Sum_probs=79.1

Q ss_pred             CCcCEEEccCCCCCCCCchHHHh----cCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCC
Q 041562          121 NYIKIIDLSSNHFQGKIPSTIFR----LTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCS  196 (653)
Q Consensus       121 ~~L~~L~Ls~n~l~~~ip~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  196 (653)
                      +.|++|+|++|.++......+..    ..++|++|+|++|.++......+. ..+++|++|+|++|.++......+    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~-~~L~~L~~L~Ls~n~l~~~~~~~L----  146 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLL-PVFLRARKLGLQLNSLGPEACKDL----  146 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTH-HHHHTEEEEECCSSCCCHHHHHHH----
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHH-HHHHhccHhhcCCCCCCHHHHHHH----
Confidence            56777777777766322222211    124666666666665443222211 123455555555555543211111    


Q ss_pred             CCCEEEcccCCCCCCccccc-cCCCCCCEEeccCCcCcc----cccccccCCCCCcEEEcccCcCCcc----cCccccCC
Q 041562          197 RLKTFRAGFNYLTGSLPDDI-YTATSLEQLSLSFNHISG----SIKNGIVNLTSLRILELYSNSLTGL----IPRDIGKL  267 (653)
Q Consensus       197 ~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~i~~----~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l  267 (653)
                                      ...+ ...++|++|+|++|.++.    .++..+..+++|++|+|++|.+++.    ++..+...
T Consensus       147 ----------------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~  210 (372)
T 3un9_A          147 ----------------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN  210 (372)
T ss_dssp             ----------------HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred             ----------------HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence                            0111 123455555555555543    1223334555566666666555432    13334455


Q ss_pred             CCCCeEEeecCcCccc----CCccccCCCCCcEEEccCCcCc
Q 041562          268 TNLESLVLHNNSLSGS----LPSSLKNCINLTLLNLQSNFFE  305 (653)
Q Consensus       268 ~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~  305 (653)
                      ++|++|+|++|.+++.    ++..+...++|++|++++|.++
T Consensus       211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            5666666666666532    2233344566666666666665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.23  E-value=1.5e-09  Score=113.69  Aligned_cols=132  Identities=15%  Similarity=0.216  Sum_probs=61.3

Q ss_pred             CCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCccc
Q 041562          333 LPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDR  412 (653)
Q Consensus       333 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  412 (653)
                      ....|.++..|+.+.+..+... .....|..++.|+.+.+. +.++.++.  ..|.+|.+|+.+.+..+ +. .    ..
T Consensus       257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~--~aF~~c~~L~~i~lp~~-v~-~----I~  326 (394)
T 4gt6_A          257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPE--SVFAGCISLKSIDIPEG-IT-Q----IL  326 (394)
T ss_dssp             CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECT--TTTTTCTTCCEEECCTT-CC-E----EC
T ss_pred             ccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCc--eeecCCCCcCEEEeCCc-cc-E----eh
Confidence            3445666666666666544332 334455566666666664 23333332  34555666666655432 11 1    11


Q ss_pred             ccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCC
Q 041562          413 LTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN  478 (653)
Q Consensus       413 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  478 (653)
                      ..+|.+|.+|+++.+..+ ++..-..+|.+|++|+.+++.++....   ..+..+..|+.+.+..+
T Consensus       327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          327 DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred             HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence            123445556666665433 433334455566666666665554321   23444555555555444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.21  E-value=2.3e-09  Score=112.27  Aligned_cols=56  Identities=14%  Similarity=0.125  Sum_probs=27.3

Q ss_pred             ccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcc
Q 041562          549 LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNL  608 (653)
Q Consensus       549 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  608 (653)
                      +|+.+.+..+ ++..-..+|.++++|+.+++.++....   ..+.....|+.+.+..|.+
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            4555555433 443445667777777777777765431   3455566677776665543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=6.3e-11  Score=122.00  Aligned_cols=105  Identities=21%  Similarity=0.176  Sum_probs=84.9

Q ss_pred             CEEEccCC-cCcccchhhhcCCccCCeeeCcC-CcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccc
Q 041562          423 QVLGLAEC-KLKGQVPSWIGKLKKLQVLDLSF-NQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDK  500 (653)
Q Consensus       423 ~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  500 (653)
                      ..++++++ +++ .+|. +..+++|++|+|++ |++.+..+..|..+++|++|+|++|+|++..|..|.+++        
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~--------   80 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP--------   80 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS--------
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc--------
Confidence            35688887 787 5777 88888899999986 888877778888899999999999988887777776654        


Q ss_pred             ccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCC
Q 041562          501 NKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLS  580 (653)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs  580 (653)
                                                                      .|+.|||++|+|++..+..|..++ |+.|+|+
T Consensus        81 ------------------------------------------------~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~  111 (347)
T 2ifg_A           81 ------------------------------------------------RLSRLNLSFNALESLSWKTVQGLS-LQELVLS  111 (347)
T ss_dssp             ------------------------------------------------CCCEEECCSSCCSCCCSTTTCSCC-CCEEECC
T ss_pred             ------------------------------------------------CCCEEeCCCCccceeCHHHcccCC-ceEEEee
Confidence                                                            677889999999876666666665 8999999


Q ss_pred             CCeeee
Q 041562          581 KNHLSG  586 (653)
Q Consensus       581 ~N~l~~  586 (653)
                      +|.+..
T Consensus       112 ~N~~~c  117 (347)
T 2ifg_A          112 GNPLHC  117 (347)
T ss_dssp             SSCCCC
T ss_pred             CCCccC
Confidence            998874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.12  E-value=1.1e-10  Score=120.15  Aligned_cols=92  Identities=22%  Similarity=0.192  Sum_probs=47.3

Q ss_pred             ccccccCCCCCCEEeccC-CcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccC
Q 041562          212 LPDDIYTATSLEQLSLSF-NHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKN  290 (653)
Q Consensus       212 ~p~~l~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  290 (653)
                      +|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++..+..+..
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  102 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG  102 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence            444 44455555555553 5555444445555555555555555555555555555555555555555555333333333


Q ss_pred             CCCCcEEEccCCcCc
Q 041562          291 CINLTLLNLQSNFFE  305 (653)
Q Consensus       291 l~~L~~L~L~~n~l~  305 (653)
                      ++ |+.|++.+|.+.
T Consensus       103 ~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A          103 LS-LQELVLSGNPLH  116 (347)
T ss_dssp             CC-CCEEECCSSCCC
T ss_pred             CC-ceEEEeeCCCcc
Confidence            33 555555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.92  E-value=2.3e-07  Score=96.41  Aligned_cols=295  Identities=13%  Similarity=0.140  Sum_probs=127.4

Q ss_pred             CEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEcc
Q 041562           75 RVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVS  154 (653)
Q Consensus        75 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls  154 (653)
                      +++.+.+.. +++..-..+|.++.+|+.++|..+ ++.....+|...+|+.+.+..+ ++ .++...|.. .+|+.+.+.
T Consensus        47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~-~I~~~aF~~-~~L~~i~lp  121 (379)
T 4h09_A           47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VK-KFGDYVFQG-TDLDDFEFP  121 (379)
T ss_dssp             GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CC-EECTTTTTT-CCCSEEECC
T ss_pred             CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCce-ee-Eeccceecc-CCcccccCC
Confidence            355555542 344333457788888888888643 5544445555566777666543 33 555555654 367777776


Q ss_pred             CCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcc
Q 041562          155 NNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISG  234 (653)
Q Consensus       155 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~  234 (653)
                      .+- +.... ..+  ...+++.+.+..+ ++......+..+.+++...+..+.........+ ..          +. ..
T Consensus       122 ~~~-~~i~~-~~F--~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~-~~----------~~-~~  184 (379)
T 4h09_A          122 GAT-TEIGN-YIF--YNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV-LY----------NK-NK  184 (379)
T ss_dssp             TTC-CEECT-TTT--TTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE-EE----------ET-TS
T ss_pred             Ccc-ccccc-ccc--ccceeeeeeccce-eeccccchhcccccccccccccccceeecccce-ec----------cc-cc
Confidence            542 11111 111  1234555544432 222334455566666666554432211000000 00          00 00


Q ss_pred             cccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhcc
Q 041562          235 SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFS  314 (653)
Q Consensus       235 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~  314 (653)
                      .....+.....+..+.+.... .......+....+|+.+.+..+ +.......+.++..|+.+.+..+ ++ .+....|.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~  260 (379)
T 4h09_A          185 TILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQ  260 (379)
T ss_dssp             SEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTT
T ss_pred             ceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccc
Confidence            111122223333333332211 1112223333444444444332 22122333444445555554433 22 23333444


Q ss_pred             CCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCc
Q 041562          315 TLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLK  394 (653)
Q Consensus       315 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~  394 (653)
                      .+.+|+.+.+..+ +.......|.+|++|+.+.+.++.++......|..+.+|+.+.+..+ ++.+..  .+|.+|.+|+
T Consensus       261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~--~aF~~C~~L~  336 (379)
T 4h09_A          261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV--YAFKNCKALS  336 (379)
T ss_dssp             TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCC
T ss_pred             eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH--HHhhCCCCCC
Confidence            4555555554332 22223334445555555555544444333444555555555555432 332222  3355555555


Q ss_pred             EEECC
Q 041562          395 VLIIP  399 (653)
Q Consensus       395 ~L~l~  399 (653)
                      .+.+.
T Consensus       337 ~i~ip  341 (379)
T 4h09_A          337 TISYP  341 (379)
T ss_dssp             CCCCC
T ss_pred             EEEEC
Confidence            55554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.92  E-value=3.3e-10  Score=116.29  Aligned_cols=84  Identities=14%  Similarity=0.200  Sum_probs=47.7

Q ss_pred             CCCCCCEEeccCCcCccccccccc---CCCCCcEEEcccCcCCcc----cCccccCCCCCCeEEeecCcCcccCCccccC
Q 041562          218 TATSLEQLSLSFNHISGSIKNGIV---NLTSLRILELYSNSLTGL----IPRDIGKLTNLESLVLHNNSLSGSLPSSLKN  290 (653)
Q Consensus       218 ~l~~L~~L~Ls~n~i~~~~~~~l~---~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  290 (653)
                      .+++|++|+|.+|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++...-..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            356677777776666543332222   456777777777776653    2233345677777777777766433233332


Q ss_pred             -CCCCcEEEccCCc
Q 041562          291 -CINLTLLNLQSNF  303 (653)
Q Consensus       291 -l~~L~~L~L~~n~  303 (653)
                       +  ...++++.+.
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3456676665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.89  E-value=7.8e-10  Score=113.46  Aligned_cols=134  Identities=19%  Similarity=0.242  Sum_probs=87.1

Q ss_pred             CCCcCEEEccCCcCcccchhhhc--CCccCCeeeCcC--CcCccC-----Cchhh--cCCCCCCEEEccCCcCcccCCcc
Q 041562          419 FKNLQVLGLAECKLKGQVPSWIG--KLKKLQVLDLSF--NQLTGS-----VPRFL--GNMSSLFHIDFSNNLISGEFPKE  487 (653)
Q Consensus       419 ~~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~--n~l~~~-----~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~  487 (653)
                      .++|++|+|..|.+.......+.  .+|+|+.|+|+.  |...+.     +...+  ..+++|++|+|++|.+.+..+..
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            46788888888887755444444  688888888853  222111     11122  24788999999988876433322


Q ss_pred             ccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccc----
Q 041562          488 FCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGN----  563 (653)
Q Consensus       488 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~----  563 (653)
                      +...+                                                    .++ .|++|+|+.|.+.+.    
T Consensus       272 la~a~----------------------------------------------------~~~-~L~~LdLs~n~L~d~G~~~  298 (362)
T 2ra8_A          272 FLESD----------------------------------------------------ILP-QLETMDISAGVLTDEGARL  298 (362)
T ss_dssp             HHHCS----------------------------------------------------SGG-GCSEEECCSSCCBHHHHHH
T ss_pred             HHhCc----------------------------------------------------cCC-CCCEEECCCCCCChHHHHH
Confidence            22111                                                    122 799999999999874    


Q ss_pred             cccccccCCCCCeEeCCCCeeeeecCccccc-CCCCCeeecCCCc
Q 041562          564 IPDQISQLTNLERMDLSKNHLSGEIPVSLKR-LHFLSAFNVAENN  607 (653)
Q Consensus       564 ~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~-l~~L~~L~ls~N~  607 (653)
                      ++..+..+++|+.|+|++|.++...-..+.. +  ...++++.++
T Consensus       299 L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          299 LLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             HHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            4555567899999999999988644333443 2  3667888876

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.82  E-value=8.4e-07  Score=92.16  Aligned_cols=147  Identities=18%  Similarity=0.200  Sum_probs=80.6

Q ss_pred             CccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccc
Q 041562          334 PITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRL  413 (653)
Q Consensus       334 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  413 (653)
                      ...+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++.+..  ..+.++.+|+.+.+..+ +. .+    ..
T Consensus       210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~--~aF~~~~~l~~i~l~~~-i~-~i----~~  279 (379)
T 4h09_A          210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS--FLLQNCTALKTLNFYAK-VK-TV----PY  279 (379)
T ss_dssp             TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT--TTTTTCTTCCEEEECCC-CS-EE----CT
T ss_pred             ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc--cccceeehhcccccccc-ce-ec----cc
Confidence            344555566666665443 22233344555666666666543 332222  34555666666665432 11 11    11


Q ss_pred             cCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCC
Q 041562          414 TSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLP  492 (653)
Q Consensus       414 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  492 (653)
                      .+|.++.+|+.+.+.++.++......|.+|.+|+.++|..+ ++......|.++++|+.+.+..+ ++..-..+|.++.
T Consensus       280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            23456677777777776666455566777777777777644 44344456777777777777544 4434445565554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.59  E-value=4.4e-10  Score=109.30  Aligned_cols=21  Identities=14%  Similarity=-0.081  Sum_probs=14.4

Q ss_pred             CccccceEeCCCC-CEEEEEcC
Q 041562           62 CCLWEGIKCDANG-RVSHLWLP   82 (653)
Q Consensus        62 ~c~w~gv~c~~~~-~v~~L~L~   82 (653)
                      .|.|.|+.|+..+ +|..+...
T Consensus        77 l~~~~g~i~~~~~~ki~~~v~~   98 (267)
T 3rw6_A           77 LKAVNYKILDRENRRISIIINS   98 (267)
T ss_dssp             HHHTTSSCBCTTSCBCCCEEEE
T ss_pred             HHhcCcEEECCCCCEEEEEEec
Confidence            4889999998644 55544443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.53  E-value=2.9e-08  Score=91.79  Aligned_cols=61  Identities=20%  Similarity=0.252  Sum_probs=39.2

Q ss_pred             ccCeeecCCccCccc----cccccccCCCCCeEeC--CCCeeeee----cCcccccCCCCCeeecCCCccc
Q 041562          549 LLHMLDLSHNNFSGN----IPDQISQLTNLERMDL--SKNHLSGE----IPVSLKRLHFLSAFNVAENNLR  609 (653)
Q Consensus       549 ~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdL--s~N~l~~~----ip~~l~~l~~L~~L~ls~N~l~  609 (653)
                      .|++|+|++|.|.+.    +...+...++|++|+|  ++|.+...    +.+.+...++|++|++++|.+.
T Consensus        94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            566777777776643    3455666667777777  66777643    3344455577777777777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.33  E-value=1.3e-07  Score=87.42  Aligned_cols=12  Identities=17%  Similarity=0.179  Sum_probs=5.5

Q ss_pred             CCCCCEEEccCC
Q 041562          171 FCSIRHLDLSNN  182 (653)
Q Consensus       171 l~~L~~L~Ls~n  182 (653)
                      .+.|++|+|++|
T Consensus        35 ~~~L~~L~L~~n   46 (185)
T 1io0_A           35 DPDLEEVNLNNI   46 (185)
T ss_dssp             CTTCCEEECTTC
T ss_pred             CCCCCEEEecCC
Confidence            344444444444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=1.6e-07  Score=91.29  Aligned_cols=40  Identities=23%  Similarity=0.325  Sum_probs=18.7

Q ss_pred             CCccCCeeeCcCCcCcc--CCchhhcCCCCCCEEEccCCcCc
Q 041562          442 KLKKLQVLDLSFNQLTG--SVPRFLGNMSSLFHIDFSNNLIS  481 (653)
Q Consensus       442 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~  481 (653)
                      ++++|+.|+|++|++++  .+|..+..+++|+.|+|++|+|+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  209 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence            34455555555555544  22333444445555555555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.90  E-value=3.6e-06  Score=75.76  Aligned_cols=82  Identities=11%  Similarity=0.084  Sum_probs=37.6

Q ss_pred             CCCEEeccCCcCcccccccccCCCCCcEEEcccCc-CCcccCccccCC----CCCCeEEeecCc-CcccCCccccCCCCC
Q 041562          221 SLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNS-LTGLIPRDIGKL----TNLESLVLHNNS-LSGSLPSSLKNCINL  294 (653)
Q Consensus       221 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~L  294 (653)
                      .|++||++++.|+..--..+..+++|++|+|++|. +++..-..++.+    ++|++|+|++|. +++.--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            44555555555444333444455555555555553 333222223332    245555555542 443322334455555


Q ss_pred             cEEEccCC
Q 041562          295 TLLNLQSN  302 (653)
Q Consensus       295 ~~L~L~~n  302 (653)
                      ++|+++++
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.86  E-value=8.2e-06  Score=73.39  Aligned_cols=84  Identities=18%  Similarity=0.160  Sum_probs=48.0

Q ss_pred             CCCCEEEcccCCCCCCccccccCCCCCCEEeccCCc-CcccccccccCC----CCCcEEEcccCc-CCcccCccccCCCC
Q 041562          196 SRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH-ISGSIKNGIVNL----TSLRILELYSNS-LTGLIPRDIGKLTN  269 (653)
Q Consensus       196 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~  269 (653)
                      .+|+.||++++.++..--..+..+++|++|+|++|. |++..-..++.+    ++|++|++++|. +++..-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            345566666655554444445566666666666663 554434444443    356777777663 55443344566677


Q ss_pred             CCeEEeecCc
Q 041562          270 LESLVLHNNS  279 (653)
Q Consensus       270 L~~L~L~~n~  279 (653)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.20  E-value=0.00017  Score=66.14  Aligned_cols=60  Identities=8%  Similarity=0.160  Sum_probs=32.9

Q ss_pred             ccCeeecCCccCccc----cccccccCCCCCeEeCCCC---eeee----ecCcccccCCCCCeeecCCCcc
Q 041562          549 LLHMLDLSHNNFSGN----IPDQISQLTNLERMDLSKN---HLSG----EIPVSLKRLHFLSAFNVAENNL  608 (653)
Q Consensus       549 ~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdLs~N---~l~~----~ip~~l~~l~~L~~L~ls~N~l  608 (653)
                      .|+.|+|++|.|.+.    +-+.+..-+.|++|+|++|   .+..    .+-+.+..-++|+.|++++|.+
T Consensus        99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A           99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            566666666666543    2334444456677777654   2322    2334455556677777766654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.92  E-value=0.00023  Score=65.14  Aligned_cols=15  Identities=27%  Similarity=0.410  Sum_probs=7.3

Q ss_pred             CCCCCEEeccCCcCc
Q 041562          219 ATSLEQLSLSFNHIS  233 (653)
Q Consensus       219 l~~L~~L~Ls~n~i~  233 (653)
                      -+.|++|+|++|.|.
T Consensus        97 N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           97 SPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSSCCEEECCSSBCC
T ss_pred             CCccCeEecCCCcCC
Confidence            344555555555444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.62  E-value=0.0023  Score=54.58  Aligned_cols=57  Identities=19%  Similarity=0.329  Sum_probs=40.7

Q ss_pred             CeeecCCccCc-cccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCccc
Q 041562          551 HMLDLSHNNFS-GNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR  609 (653)
Q Consensus       551 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  609 (653)
                      ..++.+++.++ ..+|..+.  ++|++|||++|+|+..-+..|..+++|++|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36788888876 34565433  36888888888888555556777888888888888764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.45  E-value=0.0054  Score=52.26  Aligned_cols=56  Identities=14%  Similarity=0.297  Sum_probs=36.2

Q ss_pred             EEECCCCCCC-CCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCc
Q 041562          102 HLNLSHNRLS-GEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFT  159 (653)
Q Consensus       102 ~L~Ls~n~~~-~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~  159 (653)
                      +++.+++.++ ..+|..+. .+|++|+|++|+|+ .+|..+|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC-cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            4444555543 23333221 45677777777777 778878888888888888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	653
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 90.2 bits (222), Expect = 2e-20
 Identities = 69/320 (21%), Positives = 123/320 (38%), Gaps = 19/320 (5%)

Query: 32  QACNQIDQDSLLSLGFNISSPGL--NWSSSTDCC--LWEGIKCDANG---RVSHLWLPWK 84
           + CN  D+ +LL +  ++ +P    +W  +TDCC   W G+ CD +    RV++L L   
Sbjct: 1   ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 85  GLTGTISL--SIGNLTHLSHLNLS--HNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPST 140
            L     +  S+ NL +L+ L +   +N +    P+      +  + ++  +  G IP  
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

Query: 141 IFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKT 200
           + ++   +      N       +    + S  ++  +    NR +G +P   GS S+L T
Sbjct: 121 LSQIKTLVTLDFSYNALS---GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177

Query: 201 FRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLI 260
                           +   +L  + LS N + G       +  +       + +     
Sbjct: 178 SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN-TQKIHLAKNSLAFD 236

Query: 261 PRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLR 320
              +G   NL  L L NN + G+LP  L     L  LN+  N   G+I       L +  
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--QGGNLQRFD 294

Query: 321 VLDLGSNLFTGSLPITLNSC 340
           V    +N      P  L +C
Sbjct: 295 VSAYANNKCLCGSP--LPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.2 bits (178), Expect = 9e-15
 Identities = 61/276 (22%), Positives = 103/276 (37%), Gaps = 14/276 (5%)

Query: 367 LSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLG 426
           ++ L LS  +L         L     L  L I                +      L  L 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLY 107

Query: 427 LAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPK 486
           +    + G +P ++ ++K L  LD S+N L+G++P  + ++ +L  I F  N ISG  P 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 487 EFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLL 546
            +     L      ++   +      F   N    +  + +   +      +        
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN----- 222

Query: 547 RLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAEN 606
                       N       ++    NL  +DL  N + G +P  L +L FL + NV+ N
Sbjct: 223 ----TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 607 NLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCS 642
           NL G IP GG    F  S++  N  LCG+ +  +C+
Sbjct: 279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.9 bits (206), Expect = 2e-18
 Identities = 56/277 (20%), Positives = 93/277 (33%), Gaps = 21/277 (7%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
            +P D+        L L  N I+        NL +L  L L +N ++ + P     L  L
Sbjct: 24  KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 271 ESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330
           E L L  N L        K    L +   +       +  FN    + +  L       +
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV--FNGLNQMIVVELGTNPLKSS 139

Query: 331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGC 390
           G         K L+ + +A   +   I  G+    SL+ L L  N +T +  A   L G 
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAA--SLKGL 194

Query: 391 KNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLD 450
            NL  L +  N +      +   T      +L    L +       P  +   K +QV+ 
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV------PGGLADHKYIQVVY 248

Query: 451 LSFNQLTG------SVPRFLGNMSSLFHIDFSNNLIS 481
           L  N ++         P +    +S   +   +N + 
Sbjct: 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 7e-13
 Identities = 59/304 (19%), Positives = 105/304 (34%), Gaps = 26/304 (8%)

Query: 63  CLWEGIKCDANG----------RVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSG 112
           C    ++C   G            + L L    +T        NL +L  L L +N++S 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 113 EFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSF 171
             P + +    ++ + LS N  +  +P  + +  Q L    V  N  T +        + 
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQEL---RVHENEITKVRKSVFNGLNQ 125

Query: 172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH 231
             +  L  +  + +G          +L   R     +T ++P  +    SL +L L  N 
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNK 182

Query: 232 ISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNC 291
           I+      +  L +L  L L  NS++ +    +    +L  L L+NN L    P  L + 
Sbjct: 183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADH 241

Query: 292 INLTLLNLQSNFFEG-----DISVFNFSTLLKLRVLDLGSN--LFTGSLPITLNSCKSLT 344
             + ++ L +N                +       + L SN   +    P T        
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301

Query: 345 AVNL 348
           AV L
Sbjct: 302 AVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.4 bits (158), Expect = 4e-12
 Identities = 42/273 (15%), Positives = 79/273 (28%), Gaps = 26/273 (9%)

Query: 319 LRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT 378
             +LDL +N  T        + K+L  + L  N++          L  L  L LS N L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 379 NITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPS 438
            +   +      + L+V    +  + +++ +            +  LG    K  G    
Sbjct: 93  ELPEKMP--KTLQELRVHENEITKVRKSVFNG------LNQMIVVELGTNPLKSSGIENG 144

Query: 439 WIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQ 498
               +KKL  + ++   +T       G   SL  +    N I+         L  L    
Sbjct: 145 AFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 499 DKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHN 558
               +  +    SL    +                                + ++ L +N
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY---------IQVVYLHNN 252

Query: 559 NFSG------NIPDQISQLTNLERMDLSKNHLS 585
           N S         P   ++  +   + L  N + 
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 33/215 (15%), Positives = 70/215 (32%), Gaps = 14/215 (6%)

Query: 409 DNDRLTS--ANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGN 466
            +  L     +   +  +L L   K+          LK L  L L  N+++   P     
Sbjct: 18  SDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 77

Query: 467 MSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKI 526
           +  L  +  S N +     K    L  L   +++           + K   N + +   +
Sbjct: 78  LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI--------TKVRKSVFNGLNQMIVV 129

Query: 527 LTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSG 586
                        + A   ++ L ++  ++  N +  IP  +    +L  + L  N ++ 
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKKLSYI-RIADTNIT-TIPQGL--PPSLTELHLDGNKITK 185

Query: 587 EIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTF 621
               SLK L+ L+   ++ N++             
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 220

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 4e-08
 Identities = 48/295 (16%), Positives = 89/295 (30%), Gaps = 23/295 (7%)

Query: 269 NLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
           +L  +   +  L   +P  L    +  LL+LQ+N     I   +F  L  L  L L +N 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNK 66

Query: 329 FTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILM 388
            +   P        L  + L++NQL+         L+ L       N +T +  ++   +
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV---HENEITKVRKSVFNGL 123

Query: 389 GCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQV 448
               +  L                  +  G K L  + +A+  +             L  
Sbjct: 124 NQMIVVELGTNPLKSSGIENG-----AFQGMKKLSYIRIADTNITTIPQGL---PPSLTE 175

Query: 449 LDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYL 508
           L L  N++T      L  +++L  +  S N IS          P L       + + +  
Sbjct: 176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL------RELHLNNN 229

Query: 509 EFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGN 563
           +     G        + +   +   +     S               S  +   N
Sbjct: 230 KLVKVPGGLADHKYIQVVYLHNNNIS--AIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 5/172 (2%)

Query: 15  KLLHIIIIILSCFSSFCQACNQIDQDSLLSLGFNISSPGLNWSSSTDCCLWEGIKCDANG 74
           +L  +   +           N+I    +    FN  +  +     T+     GI+  A  
Sbjct: 90  QLKELPEKMPKTLQELRVHENEIT--KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 75  RVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQ 134
            +  L       T   ++  G    L+ L+L  N+++    +SL           S +  
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 135 GKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTG 186
             + +     T +L   +++NN    L+     +     I+ + L NN  + 
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNK---LVKVPGGLADHKYIQVVYLHNNNISA 256

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (188), Expect = 4e-16
 Identities = 62/286 (21%), Positives = 95/286 (33%), Gaps = 10/286 (3%)

Query: 70  CDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLS 129
           C    +V     P +GL    ++ +G       + L  NR+S    +S  +     I   
Sbjct: 8   CYNEPKV-TTSCPQQGLQ---AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 130 SNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP 189
            ++   +I +  F     L   ++S+N+    +   A       +  L L         P
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 190 LGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL 249
                 + L+      N L     D      +L  L L  N IS   +     L SL  L
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 250 ELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDIS 309
            L+ N +  + P     L  L +L L  N+LS     +L     L  L L  N +  D  
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

Query: 310 VFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEG 355
                    L+     S+    SLP  L          LA N L+G
Sbjct: 243 ARPL--WAWLQKFRGSSSEVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 8e-13
 Identities = 47/245 (19%), Positives = 82/245 (33%), Gaps = 8/245 (3%)

Query: 244 TSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNF 303
            + + + L+ N ++ +         NL  L LH+N L+    ++      L  L+L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 304 FEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA 363
               +    F  L +L  L L         P       +L  + L  N L+         
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 364 LKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQ 423
           L +L+ L L  N ++++    R   G  +L  L++  N +    P   R         L 
Sbjct: 152 LGNLTHLFLHGNRISSVP--ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 424 VLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGE 483
                   L       +  L+ LQ L L+ N       R     + L     S++ +   
Sbjct: 210 -----ANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCS 263

Query: 484 FPKEF 488
            P+  
Sbjct: 264 LPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 9e-11
 Identities = 59/287 (20%), Positives = 89/287 (31%), Gaps = 37/287 (12%)

Query: 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHI 232
           + + + L  NR +        +C  L       N L             LEQL LS N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 233 SGSIK-NGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNC 291
             S+       L  L  L L    L  L P     L  L+ L L +N+L      + ++ 
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 292 INLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARN 351
            NLT L L  N     +    F  L  L  L L  N      P        L  + L  N
Sbjct: 153 GNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 352 QLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDND 411
            L    +  +  L++L +L L++N           +  C+   +                
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPW---------VCDCRARPLW--------------- 247

Query: 412 RLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG 458
                     LQ    +  ++   +P     L    +  L+ N L G
Sbjct: 248 --------AWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 57/327 (17%), Positives = 94/327 (28%), Gaps = 69/327 (21%)

Query: 260 IPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKL 319
           +P  I      + + LH N +S    +S + C NLT+L L SN      +       L  
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 320 RVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTN 379
           ++    +       P T +    L  ++L R  L+         L +L +L L +N+L  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 380 ITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSW 439
           +                     F D                NL  L L   ++       
Sbjct: 144 L-----------------PDDTFRD--------------LGNLTHLFLHGNRISSVPERA 172

Query: 440 IGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQD 499
              L  L  L L  N++    P    ++  L  +    N +S    +    L AL     
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ---- 228

Query: 500 KNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNN 559
                       L    N ++                         L   L     S + 
Sbjct: 229 -----------YLRLNDNPWVC------------------DCRARPLWAWLQKFRGSSSE 259

Query: 560 FSGNIPDQISQLTNLERMDLSKNHLSG 586
              ++P    +L   +   L+ N L G
Sbjct: 260 VPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 44/294 (14%), Positives = 93/294 (31%), Gaps = 23/294 (7%)

Query: 339 SCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLII 398
             +     +  +  L+  +  GI    +   + L  N ++++  A      C+NL +L +
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAAS--FRACRNLTILWL 63

Query: 399 PLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG 458
             N +           +     +L        +L+   P+    L +L  L L    L  
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSD----NAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119

Query: 459 SVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNN 518
             P     +++L ++   +N +       F  L  L            +L  +       
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL---------THLFLHGNRISSVPE 170

Query: 519 FIGEYKKILTFHEQYTWKTTASAAVSLLRLL-LHMLDLSHNNFSGNIPDQISQLTNLERM 577
                   L     +  +       +   L  L  L L  NN S    + ++ L  L+ +
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230

Query: 578 DLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPS---GGQFDTFPSSSFRG 628
            L+ N    +   +     +L  F  + + +  S+P    G       ++  +G
Sbjct: 231 RLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.7 bits (190), Expect = 6e-16
 Identities = 74/409 (18%), Positives = 145/409 (35%), Gaps = 61/409 (14%)

Query: 79  LWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSG-EFPSSLSSNYIKIIDLSSNHFQGKI 137
             L    +T T+S +  +L  ++ L      +   +    L++  +  I+ S+N      
Sbjct: 27  TVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVEYLNN--LTQINFSNNQLTDIT 82

Query: 138 P-STIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCS 196
           P   + +L   L+  N   +        +    +  + +  D+   +    +     S +
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 197 RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKN-------GIVNLTSLRIL 249
            +    A     +          T L+ L+         I +        +  LT+L  L
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 250 ELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDIS 309
              +N ++ + P  I   TNL+ L L+ N L      +L +  NLT L+L +N       
Sbjct: 203 IATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 258

Query: 310 VFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSF 369
               S L KL  L LG+N  +   P+   +  +        N+ + +    I  LK+L++
Sbjct: 259 ---LSGLTKLTELKLGANQISNISPLAGLTALTNLE----LNENQLEDISPISNLKNLTY 311

Query: 370 LSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAE 429
           L+L  N++++I                  P++                    LQ L  A 
Sbjct: 312 LTLYFNNISDI-----------------SPVS----------------SLTKLQRLFFAN 338

Query: 430 CKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478
            K+     S +  L  +  L    NQ++   P  L N++ +  +  ++ 
Sbjct: 339 NKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.0 bits (188), Expect = 1e-15
 Identities = 62/375 (16%), Positives = 123/375 (32%), Gaps = 29/375 (7%)

Query: 242 NLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQS 301
            L       L   ++T  + +    L  + +L      +  S+   ++   NLT +N  +
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSN 75

Query: 302 NFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI 361
           N       + N + L+ + + +      T    +T  +  +L    +        ++   
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 362 VALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKN 421
               S + +S  +      +               +  L  ++     +++++  +    
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 422 LQ---VLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478
           L     L     ++    P  I     L  L L+ NQL       L ++++L  +D +NN
Sbjct: 196 LTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 479 LISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTT 538
            IS   P     L  LT         E  L  +     +   G          +   +  
Sbjct: 252 QISNLAP--LSGLTKLT---------ELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 539 ASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFL 598
           +  +       L  L L  NN S   P  +S LT L+R+  + N +S     SL  L  +
Sbjct: 301 SPISNLKN---LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 599 SAFNVAENNLRGSIP 613
           +  +   N +    P
Sbjct: 354 NWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.2 bits (160), Expect = 4e-12
 Identities = 48/248 (19%), Positives = 78/248 (31%), Gaps = 40/248 (16%)

Query: 55  NWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEF 114
                                 +   L       +    +G LT+L  L+L+ N+L    
Sbjct: 176 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-- 233

Query: 115 PSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSI 174
                                    T+  LT NL   +++NN  + L   S        +
Sbjct: 234 -----------------------IGTLASLT-NLTDLDLANNQISNLAPLSGL----TKL 265

Query: 175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISG 234
             L L  N+ +   PL   +                     I    +L  L+L FN+IS 
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLE----DISPISNLKNLTYLTLYFNNISD 321

Query: 235 SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINL 294
                + +LT L+ L   +N ++      +  LTN+  L   +N +S   P  L N   +
Sbjct: 322 IS--PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRI 375

Query: 295 TLLNLQSN 302
           T L L   
Sbjct: 376 TQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.9 bits (154), Expect = 2e-11
 Identities = 61/383 (15%), Positives = 125/383 (32%), Gaps = 26/383 (6%)

Query: 214 DDIYTATSLEQ---LSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
           + I+T T+L +     L   +++ ++     +L  +  L+     +  +    +  L NL
Sbjct: 13  NQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNL 68

Query: 271 ESLVLHNNSLSGSLP-SSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF 329
             +   NN L+   P  +L   +++ + N Q        ++ N + L          +  
Sbjct: 69  TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 128

Query: 330 TGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMG 389
                +      S T  +++       +       +      L+N +           + 
Sbjct: 129 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 188

Query: 390 CKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVL 449
             ++   +  L  +  T      +T      NL  L L   +LK      +  L  L  L
Sbjct: 189 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 246

Query: 450 DLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLE 509
           DL+ NQ++   P  L  ++ L  +    N IS   P             +    + S + 
Sbjct: 247 DLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 510 F-----SLFKGSNNF-----IGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNN 559
                  L    NN      +    K+          +  S+  +L  +  + L   HN 
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNI--NWLSAGHNQ 362

Query: 560 FSGNIPDQISQLTNLERMDLSKN 582
            S   P  ++ LT + ++ L+  
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 43/227 (18%), Positives = 65/227 (28%), Gaps = 37/227 (16%)

Query: 419 FKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478
              +  L      +K      +  L  L  ++ S NQLT   P  L N++ L  I  +NN
Sbjct: 43  LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN 98

Query: 479 LISGEFPKEFCRLPALT-----PEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQY 533
            I+   P                  D +          L   SN              Q 
Sbjct: 99  QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 158

Query: 534 TWKTTASAAVSLLRLLLHM------------------------LDLSHNNFSGNIPDQIS 569
                    +  L  L  +                        L  ++N  S   P  I 
Sbjct: 159 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 218

Query: 570 QLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGG 616
             TNL+ + L+ N L      +L  L  L+  ++A N +    P  G
Sbjct: 219 --TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSG 261

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 4e-10
 Identities = 46/226 (20%), Positives = 77/226 (34%), Gaps = 9/226 (3%)

Query: 93  SIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152
            +  +     +N     L+   P  L  +   I+ LS N       +T+   T  L   N
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD-TTILHLSENLLYTFSLATLMPYT-RLTQLN 61

Query: 153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSL 212
           +              VD    +      ++     +PL   +   L      FN LT   
Sbjct: 62  LDRAEL-----TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 213 PDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLES 272
              +     L++L L  N +       +     L  L L +N+LT L    +  L NL++
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 273 LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLK 318
           L+L  NSL  ++P        L    L  N +  +  +  F   L+
Sbjct: 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 43/212 (20%), Positives = 71/212 (33%), Gaps = 9/212 (4%)

Query: 69  KCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDL 128
           +         +    + LT   +L        + L+LS N L     ++L   Y ++  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT---ALPPDLPKDTTILHLSENLLYTFSLATL-MPYTRLTQL 60

Query: 129 SSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPV 188
           + +  +         L          N   +          +  ++  LD+S NR T   
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQS----LPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 189 PLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRI 248
              L     L+      N L    P  +     LE+LSL+ N+++      +  L +L  
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 249 LELYSNSLTGLIPRDIGKLTNLESLVLHNNSL 280
           L L  NSL   IP+       L    LH N  
Sbjct: 177 LLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 29/188 (15%), Positives = 54/188 (28%), Gaps = 16/188 (8%)

Query: 435 QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSN-------------NLIS 481
            +P  + K     +L LS N L       L   + L  ++                 L +
Sbjct: 24  ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81

Query: 482 GEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASA 541
            +      +   L  +              L       +    ++   + +     T   
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

Query: 542 AVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAF 601
            +      L  L L++NN +      ++ L NL+ + L +N L   IP      H L   
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200

Query: 602 NVAENNLR 609
            +  N   
Sbjct: 201 FLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 7e-06
 Identities = 35/216 (16%), Positives = 66/216 (30%), Gaps = 15/216 (6%)

Query: 263 DIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVL 322
           ++ K+ +   +     +L+ +LP  L    + T+L+L  N      S+       +L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYT-FSLATLMPYTRLTQL 60

Query: 323 DLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITG 382
           +L            L    +L  +           S  ++     +   L  +     + 
Sbjct: 61  NLDRAEL-----TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 383 AIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGK 442
            +  L G   L+ L +  N +    P     T      +L         L       +  
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-----NNNLTELPAGLLNG 170

Query: 443 LKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478
           L+ L  L L  N L  ++P+       L       N
Sbjct: 171 LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 40/215 (18%), Positives = 61/215 (28%), Gaps = 15/215 (6%)

Query: 242 NLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQS 301
            + S   +     +LT  +P D+ K  +   L L  N L     ++L     LT LNL  
Sbjct: 8   KVASHLEVNCDKRNLTA-LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 302 NFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI 361
                         L  L +                        ++++ N+L       +
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV----LDVSFNRLTSLPLGAL 120

Query: 362 VALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKN 421
             L  L  L L  N L  +   +             +  N + E           NG +N
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKL--SLANNNLTELPAG-----LLNGLEN 173

Query: 422 LQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQL 456
           L  L L E  L   +P        L    L  N  
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 7e-04
 Identities = 44/210 (20%), Positives = 60/210 (28%), Gaps = 8/210 (3%)

Query: 168 VDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSL 227
           V    S   ++      T  +P  L             N L       +   T L QL+L
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 228 SFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSS 287
                  +       L  L  L+L  N L  L              V   N L+     +
Sbjct: 63  D--RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV-SFNRLTSLPLGA 119

Query: 288 LKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVN 347
           L+    L  L L+ N  +         T      L L +N  T      LN  ++L  + 
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKL-EKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 348 LARNQLEGQISPGIVALKSLSFLSLSNNSL 377
           L  N L   I  G      L F  L  N  
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 34/236 (14%), Positives = 71/236 (30%), Gaps = 26/236 (11%)

Query: 242 NLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQS 301
            L +   +    +++T  +      L  + +L      ++      ++   NL  L L+ 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 302 NFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI 361
           N       + N +                      L    +      A   L+   +  +
Sbjct: 73  NQITDLAPLKNLT------------------KITELELSGNPLKNVSAIAGLQSIKTLDL 114

Query: 362 VALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKN 421
            + +      L+  S   +       +   +    +  L ++         LT       
Sbjct: 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK 174

Query: 422 LQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSN 477
           L  L   + K+     S +  L  L  + L  NQ++   P  L N S+LF +  +N
Sbjct: 175 LTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 40/221 (18%), Positives = 71/221 (32%), Gaps = 20/221 (9%)

Query: 79  LWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIP 138
           +      +T T++ +  +L  ++ L+     ++         N +  ++L  N       
Sbjct: 24  IAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQIT---- 76

Query: 139 STIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRL 198
                  +NL        S   L + SA             S          GL +   L
Sbjct: 77  --DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 199 KTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTG 258
                        + +    A       LS  +   S    + NL+ L  L+   N ++ 
Sbjct: 135 -------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 259 LIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNL 299
           + P  +  L NL  + L NN +S   P  L N  NL ++ L
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 7e-06
 Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 14/126 (11%)

Query: 56  WSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFP 115
              S                +          +  I         L  LN+S+N+L  E P
Sbjct: 242 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP 300

Query: 116 SSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIR 175
           +      ++ +  S NH      + +  L QNL   +V  N            D   S+ 
Sbjct: 301 ALPPR--LERLIASFNHL-----AEVPELPQNLKQLHVEYNPLREF------PDIPESVE 347

Query: 176 HLDLSN 181
            L +++
Sbjct: 348 DLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 399 PLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG 458
           P N        N+  +  +   +L+ L ++  KL  ++P+   +L++   L  SFN L  
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA- 317

Query: 459 SVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPAL 494
            VP    N+  L       N +  EFP     +  L
Sbjct: 318 EVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 61/351 (17%), Positives = 98/351 (27%), Gaps = 51/351 (14%)

Query: 268 TNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSN 327
                L L+N  LS SLP    +                            L  L    N
Sbjct: 38  RQAHELELNNLGLS-SLPELPPH----------------------------LESLVASCN 68

Query: 328 LFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRIL 387
             T  LP      +SL ++ +  N L       +  L  L      +N+       ++  
Sbjct: 69  SLT-ELP---ELPQSLKSLLVDNNNL-----KALSDLPPLLEYLGVSNNQLEKLPELQNS 119

Query: 388 MGCKNLKVLIIPLNFMDETMPDNDRLTSANG----FKNLQVLGLAECKLKGQVPSWIGKL 443
              K + V    L  + +  P  + + + N        LQ L                  
Sbjct: 120 SFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD 179

Query: 444 KKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKA 503
             L +  +            L N+  L  I   NNL+                +      
Sbjct: 180 LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDL 239

Query: 504 NESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGN 563
            E     +    S N      ++          +    ++  L   L  L++S+N     
Sbjct: 240 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-E 298

Query: 564 IPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPS 614
           +P    +L  L     S NHL+ E+P   + L  L   +V  N LR   P 
Sbjct: 299 LPALPPRLERL---IASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 227 LSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPS 286
              N  S  I++      SL  L + +N L  L          LE L+   N L+  +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLA-EVPE 321

Query: 287 SLKNCINLTLLNLQSN 302
             +   NL  L+++ N
Sbjct: 322 LPQ---NLKQLHVEYN 334

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 11/129 (8%)

Query: 150 TFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLT 209
             ++++   T L      ++    + HLDLS+NR     P  L +   L+  +A  N L 
Sbjct: 2   VLHLAHKDLTVL----CHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE 56

Query: 210 GSLPDDIYTATSLEQLSLSFNHI-SGSIKNGIVNLTSLRILELYSNSLT---GLIPRDIG 265
               D +     L++L L  N +   +    +V+   L +L L  NSL    G+  R   
Sbjct: 57  N--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 266 KLTNLESLV 274
            L ++ S++
Sbjct: 115 MLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 4/94 (4%)

Query: 93  SIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152
            +  L  ++HL+LSHNRL    P+  +   ++++  S N  +           Q L    
Sbjct: 15  HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQEL---L 71

Query: 153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTG 186
           + NN      +      S   +  L+L  N    
Sbjct: 72  LCNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 225 LSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSL 284
           L L+   ++  +   +  L  +  L+L  N L  L P  +  L  LE  VL  +  +   
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLE--VLQASDNALEN 57

Query: 285 PSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG 331
              + N   L  L L +N  +   ++    +  +L +L+L  N    
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 8/109 (7%)

Query: 103 LNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLI 162
           L+L+H  L+           +  +DLS N  +   P+      + L     S+N+   + 
Sbjct: 3   LHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALENVD 59

Query: 163 SWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTG 210
             +        ++ L L NNR         L SC RL       N L  
Sbjct: 60  GVANL----PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 13/113 (11%)

Query: 347 NLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDET 406
           +LA   L   +   +  L  ++ L LS+N L  +  A+  L            L  +  +
Sbjct: 4   HLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRC----------LEVLQAS 51

Query: 407 MPDNDRLTSANGFKNLQVLGLAECKLKG-QVPSWIGKLKKLQVLDLSFNQLTG 458
               + +        LQ L L   +L+       +    +L +L+L  N L  
Sbjct: 52  DNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 33/256 (12%), Positives = 77/256 (30%), Gaps = 16/256 (6%)

Query: 99  HLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSF 158
            +       + +        S   ++ +DLS++  +      I      L   ++     
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83

Query: 159 TGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYT 218
           +  I  +  +    ++  L+LS         L     S  +      ++        +  
Sbjct: 84  SDPIVNT--LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 219 ATSLEQLSLSFNHISGSIKNGIVN---------LTSLRILELYSNSLTGLIPRDIGKLTN 269
           A +    +++  ++SG  KN   +            + +    S  L     ++  +L  
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 270 LESLVLHN-NSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
           L+ L L     +       L     L  L +     +G + +        L  L +  + 
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL----KEALPHLQINCSH 257

Query: 329 FTGSLPITLNSCKSLT 344
           FT     T+ + K+  
Sbjct: 258 FTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 26/254 (10%), Positives = 73/254 (28%), Gaps = 10/254 (3%)

Query: 344 TAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFM 403
             ++L    L   ++  +++   ++F        + +   +        ++ + +  + +
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAF----RCPRSFMDQPLAEHFSPFRVQHMDLSNSVI 58

Query: 404 DETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRF 463
           +     +      +    LQ L L   +L   + + + K   L  L+LS           
Sbjct: 59  E----VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ 114

Query: 464 LGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEY 523
               S     + + +       K      A   E         Y +       +  +   
Sbjct: 115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 524 KKILTFHEQYTWKTTASAAVSLLRL-LLHMLDLSH-NNFSGNIPDQISQLTNLERMDLSK 581
             ++      +            +L  L  L LS   +       ++ ++  L+ + +  
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234

Query: 582 NHLSGEIPVSLKRL 595
               G + +  + L
Sbjct: 235 IVPDGTLQLLKEAL 248

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 39/252 (15%), Positives = 86/252 (34%), Gaps = 18/252 (7%)

Query: 86  LTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSS--NHFQGKIPSTIFR 143
                     +   + H++LS++ +       + S   K+ +LS         I +T+ +
Sbjct: 34  FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 93

Query: 144 LTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDL------SNNRFTGPVPLGLGSCSR 197
            + NL+  N+S  S     +    + S   +  L+L      +       V     + ++
Sbjct: 94  NS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 152

Query: 198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH-ISGSIKNGIVNLTSLRILEL-YSNS 255
           L       N     L   +    +L  L LS +  +          L  L+ L L     
Sbjct: 153 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 212

Query: 256 LTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLK-------NCINLTLLNLQSNFFEGDI 308
           +      ++G++  L++L +      G+L    +       NC + T +   +   + + 
Sbjct: 213 IIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQ 272

Query: 309 SVFNFSTLLKLR 320
            ++     L L+
Sbjct: 273 EIWGIKCRLTLQ 284

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 30/242 (12%), Positives = 63/242 (26%), Gaps = 16/242 (6%)

Query: 63  CLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-N 121
           C      C  +            +T    +      +   L     +L      + S   
Sbjct: 8   CSNRVFLCQESK-----------VT---EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFG 53

Query: 122 YIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSN 181
            ++ I++S N     I + +F     L    +   +    I+  A+ +       L  + 
Sbjct: 54  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 113

Query: 182 NRFTGPVPLGLGSCSRLKTFRAG-FNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGI 240
                P    + S  ++        N  T      +  +     L L+ N I        
Sbjct: 114 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF 173

Query: 241 VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQ 300
                  +    +N+L  L        +    L +    +       L+N   L   +  
Sbjct: 174 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

Query: 301 SN 302
           + 
Sbjct: 234 NL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 35/235 (14%), Positives = 69/235 (29%), Gaps = 9/235 (3%)

Query: 245 SLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFF 304
           S R+     + +T  IP D+    N   L      L      +     +L  + +  N  
Sbjct: 9   SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 305 EGDISVFNFSTLLKLRVLDLGS-NLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA 363
              I    FS L KL  + +   N      P    +  +L  + ++   ++       + 
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 364 LKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQ 423
                 L + +N   +       +       +L +  N + E           NG +  +
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-----NGTQLDE 180

Query: 424 VLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478
           +       L+              +LD+S  ++       L N+  L      N 
Sbjct: 181 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 5e-05
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 9/90 (10%)

Query: 417 NGFKNLQVLGLAECKLKGQ----VPSWIGKLKKLQVLDLSFNQLTGSVPRFLG-----NM 467
                L+VL LA+C +       + + +     L+ LDLS N L  +    L        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 468 SSLFHIDFSNNLISGEFPKEFCRLPALTPE 497
             L  +   +   S E       L    P 
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQALEKDKPS 455

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 421 NLQVLGLAECKLK-GQVPSWIGKLKKLQVLDLSFNQLTG----SVPRFLGNMSSLFHIDF 475
           ++Q L +   +L   +    +  L++ QV+ L    LT      +   L    +L  ++ 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 476 SNNLISGEFPKEFCRL 491
            +N +         + 
Sbjct: 63  RSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 7e-05
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 245 SLRILELYSNSLTGL-IPRDIGKLTNLESLVLHNNSLSG----SLPSSLKNCINLTLLNL 299
            ++ L++    L+       +  L   + + L +  L+      + S+L+    L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 300 QSNFFEGD----ISVFNFSTLLKLRVLDLGSN 327
           +SN         +     +   K++ L L + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 221 SLEQLSLSFNHISGSIKNGIV-NLTSLRILELYSNSLTGLIPRDIGK----LTNLESLVL 275
            ++ L +    +S +    ++  L   +++ L    LT    +DI         L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 276 HNNSLSGSLPSSL-----KNCINLTLLNLQSNFF 304
            +N L       +          +  L+LQ+   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 220 TSLEQLSLSFNHISG----SIKNGIVNLTSLRILELYSNSLTGLIPRDIGK-----LTNL 270
           + L  L L+   +S     S+   ++   SLR L+L +N L       + +        L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 271 ESLVLHNNSLSGSLPSSL----KNCINLTLL 297
           E LVL++   S  +   L    K+  +L ++
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 4/92 (4%)

Query: 292 INLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG----SLPITLNSCKSLTAVN 347
           +++  L++Q               L + +V+ L     T      +   L    +L  +N
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 348 LARNQLEGQISPGIVALKSLSFLSLSNNSLTN 379
           L  N+L       ++         +   SL N
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 9/75 (12%), Positives = 23/75 (30%), Gaps = 2/75 (2%)

Query: 123 IKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFT--GLISWSAWVDSFCSIRHLDLS 180
           I+ +D+          + +  L Q      + +   T       S+ +    ++  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 181 NNRFTGPVPLGLGSC 195
           +N         +   
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 25/109 (22%)

Query: 164 WSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLE 223
                     +R L L++   +      L +                     +    SL 
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT--------------------LLANHSLR 400

Query: 224 QLSLSFNHISGSIKNGIV-----NLTSLRILELYSNSLTGLIPRDIGKL 267
           +L LS N +  +    +V         L  L LY    +  +   +  L
Sbjct: 401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 317 LKLRVLDLGSNLFTGS-LPITLNSCKSLTAVNLARNQLEGQ----ISPGIVALKSLSFLS 371
           L ++ LD+     + +     L   +    V L    L       IS  +    +L+ L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 372 LSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETM 407
           L +N L ++ G   +L G +     I  L+  +  +
Sbjct: 62  LRSNELGDV-GVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 9/183 (4%)

Query: 172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYT-ATSLEQLSLSFN 230
           C    +D +       +P  +             N L     D ++     L +L L  N
Sbjct: 8   CEGTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN 64

Query: 231 HISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKN 290
            ++G   N     + ++ L+L  N +  +  +    L  L++L L++N +S  +P S ++
Sbjct: 65  QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

Query: 291 CINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLAR 350
             +LT LNL SN F  +  +  F+  L+ + L+          P  +   +     +L  
Sbjct: 125 LNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLN--GGAARCGAPSKVRDVQIK---DLPH 179

Query: 351 NQL 353
           ++ 
Sbjct: 180 SEF 182

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 28/194 (14%), Positives = 65/194 (33%), Gaps = 13/194 (6%)

Query: 417 NGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFS 476
           + F       L +  +   V     +L  +  +  + + +       +  + ++  +  +
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 477 NNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILT------FH 530
            N ++   P    +        +    + S L+      S +        +         
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 531 EQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPV 590
           E           +++L  L  +  LS  +   +    ++ LT L+ + LSKNH+S ++  
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRA 195

Query: 591 --SLKRLHFLSAFN 602
              LK L  L  F+
Sbjct: 196 LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 6e-04
 Identities = 32/199 (16%), Positives = 66/199 (33%), Gaps = 24/199 (12%)

Query: 214 DDIYTATSLEQL---SLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
             I++  +  +    +L    ++ ++      L S+  +   ++ +  +    I  L N+
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNV 70

Query: 271 ESLVLHNNSLSGSLPSS------LKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDL 324
             L L+ N L+   P +              + +L S      +   +        +  L
Sbjct: 71  TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGL 130

Query: 325 GSNLFTGSLPITLNSCKSLTAVNLARNQLEGQIS-------PGIVALKSLSFLSLSNNSL 377
                  SL +  N    +T ++         +          +  L  L  L LS N +
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 190

Query: 378 TNITGAIRILMGCKNLKVL 396
           +++      L G KNL VL
Sbjct: 191 SDLRA----LAGLKNLDVL 205

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 34/206 (16%), Positives = 67/206 (32%), Gaps = 18/206 (8%)

Query: 96  NLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN 155
                   NL    ++     +  ++ I  I  +++  +      I  L  N+    ++ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNS-IDQIIANNSDIKSVQG--IQYLP-NVTKLFLNG 77

Query: 156 NSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDD 215
           N  T +   +   +        +   +  +      L S S      +  N L      +
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 216 IYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVL 275
                          +   +    +  LT L  L L  N ++ ++P  +  LT L++L L
Sbjct: 138 SLY----------LGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185

Query: 276 HNNSLSGSLPSSLKNCINLTLLNLQS 301
             N +S     +L    NL +L L S
Sbjct: 186 SKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 29/200 (14%), Positives = 62/200 (31%), Gaps = 37/200 (18%)

Query: 309 SVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLS 368
            +F+     +    +L     T    +T N   S+  +    + ++     GI  L +++
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVT 71

Query: 369 FLSLSNNSLT-------------------------------NITGAIRILMGCKNLKVLI 397
            L L+ N LT                                +        G  ++  L+
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 398 IPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLT 457
                    + +N         +  ++  L+    +      +  L KLQ L LS N ++
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS 191

Query: 458 GSVPRFLGNMSSLFHIDFSN 477
               R L  + +L  ++  +
Sbjct: 192 D--LRALAGLKNLDVLELFS 209

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 47/296 (15%), Positives = 96/296 (32%), Gaps = 23/296 (7%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISG----SIKNGIVNLTSLRILELYSNSLTGLIPRDIGK 266
           S+   +    S++++ LS N I       +   I +   L I E        +       
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 267 LTNLESLVLHNNSLS--GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDL 324
           L  L   +L    L       ++        L++  S     +    + + L       +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 325 GSNLFTGSLPITLNSCKSLTAVNLARNQLE----GQISPGIVALKSLSFLSLSNNSLTNI 380
              L   ++     +   L ++   RN+LE     + +    + + L  + +  N +   
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 381 TGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTS--ANGFKNLQVLGLAECKLKGQVPS 438
                +L G    + L +     +          +     + NL+ LGL +C L  +  +
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 439 WIG------KLKKLQVLDLSFNQLTGSVPRFL-----GNMSSLFHIDFSNNLISGE 483
            +       +   LQ L L +N++     R L       M  L  ++ + N  S E
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 45/331 (13%), Positives = 89/331 (26%), Gaps = 17/331 (5%)

Query: 317 LKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQ----ISPGIVALKSLSFLSL 372
             L++  + +     S+   L    S+  + L+ N +  +    +S  I + K L     
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 373 SNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKL 432
           S+     +   I   +      +L  P         +    T+     +          L
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 433 KGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLP 492
                    +        L    +           S +   +   N    E+ K F    
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 493 AL-TPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLH 551
            L T +  +N      +E  L +G           L  +      ++A A        L 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 552 MLDLSHNNFSGNIPDQISQ------LTNLERMDLSKNHLSGEIPVSL-----KRLHFLSA 600
            L L+    S      +           L+ + L  N +  +   +L     +++  L  
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 601 FNVAENNLRGSIPSGGQFDTFPSSSFRGNPD 631
             +  N          +     S+  RG  D
Sbjct: 307 LELNGNRFSEEDDVVDEIREVFSTRGRGELD 337

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 6/140 (4%)

Query: 313 FSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSL 372
           ++  ++ R LDL        +     +     A++ + N++  +   G   L+ L  L +
Sbjct: 14  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLV 70

Query: 373 SNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKL 432
           +NN +  I   +   +      +L    N     + D D L S      L +L       
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILT---NNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 433 KGQVPSWIGKLKKLQVLDLS 452
           K      I K+ +++VLD  
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQ 147

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 6/130 (4%)

Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNL 270
            L   +       Q +L    +       +V      +L    +S+   +      +  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNR-RSSMAATLRIIEENIPEL 67

Query: 271 ESLVLHNNSLSG--SLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
            SL L NN L     + S ++   NL +LNL  N  +      +    LKL  L L  N 
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNS 126

Query: 329 FTGSLPITLN 338
            + +      
Sbjct: 127 LSDTFRDQST 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	653
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.98
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.17
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.54
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.53
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.87
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.83

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.7e-41  Score=344.68  Aligned_cols=289  Identities=27%  Similarity=0.442  Sum_probs=183.3

Q ss_pred             cCCHHhHHHHHHhhhcCCCCC--CCCCCCCCCc--cccceEeCC---CCCEEEEEcCCCCcce--eccccccCCCCCCEE
Q 041562           33 ACNQIDQDSLLSLGFNISSPG--LNWSSSTDCC--LWEGIKCDA---NGRVSHLWLPWKGLTG--TISLSIGNLTHLSHL  103 (653)
Q Consensus        33 ~~~~~~~~~ll~~k~~~~~~~--~~W~~~~~~c--~w~gv~c~~---~~~v~~L~L~~~~l~g--~~~~~l~~l~~L~~L  103 (653)
                      -|.++||+||++||+++.++.  ++|..++|||  .|+||+|+.   .+||++|+|++++++|  .+|+++++|++|++|
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L   81 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL   81 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccccc
Confidence            499999999999999998877  8998889999  499999985   3489999999999988  588999999999999


Q ss_pred             ECCC-CCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccC
Q 041562          104 NLSH-NRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSN  181 (653)
Q Consensus       104 ~Ls~-n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~  181 (653)
                      +|++ |+++|.+|..++. ++|++|+|++|++.+..+. .+..+.+|+++++++|.+.+.                    
T Consensus        82 ~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-~~~~~~~L~~l~l~~N~~~~~--------------------  140 (313)
T d1ogqa_          82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGT--------------------  140 (313)
T ss_dssp             EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTCCEEECCSSEEESC--------------------
T ss_pred             ccccccccccccccccccccccchhhhccccccccccc-cccchhhhccccccccccccc--------------------
Confidence            9986 7888888877666 6666666666666643333 233355555555555555444                    


Q ss_pred             CcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCC-CEEeccCCcCcccccccccCCCCCcEEEcccCcCCccc
Q 041562          182 NRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSL-EQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLI  260 (653)
Q Consensus       182 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~  260 (653)
                            +|..+.++++++++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..+ +++++.+...+.+
T Consensus       141 ------~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~  213 (313)
T d1ogqa_         141 ------LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDA  213 (313)
T ss_dssp             ------CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECC
T ss_pred             ------CchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence                  44444445555555555555544455444444443 445555555555555444444332 4555555555555


Q ss_pred             CccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCC
Q 041562          261 PRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSC  340 (653)
Q Consensus       261 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  340 (653)
                      |..++.+++++.+++++|.+.+.+| .+..+++|+.|++++|+++|.+|. .++.+++|++|+|++|+++|.+|. ++++
T Consensus       214 ~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~-~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L  290 (313)
T d1ogqa_         214 SVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQ-GGNL  290 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccCccCeecccCCh-HHhCCCCCCEEECcCCcccccCCC-cccC
Confidence            5555555555555555555554333 345555555555555555555553 455555555555555555555553 3455


Q ss_pred             CCCCeEEccCcc
Q 041562          341 KSLTAVNLARNQ  352 (653)
Q Consensus       341 ~~L~~L~L~~n~  352 (653)
                      ++|+.+++++|+
T Consensus       291 ~~L~~l~l~~N~  302 (313)
T d1ogqa_         291 QRFDVSAYANNK  302 (313)
T ss_dssp             GGSCGGGTCSSS
T ss_pred             CCCCHHHhCCCc
Confidence            555556666554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.98  E-value=3.1e-32  Score=275.88  Aligned_cols=258  Identities=27%  Similarity=0.484  Sum_probs=157.0

Q ss_pred             cCEEEccCCcccc--cCCccCcCCCCCCeEEccC-ccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcE
Q 041562          319 LRVLDLGSNLFTG--SLPITLNSCKSLTAVNLAR-NQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKV  395 (653)
Q Consensus       319 L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~  395 (653)
                      ++.|+|+++.+.|  .+|..++++++|++|+|++ |.++|.+|..++++++|++|++++|++..+...  .+..+..|+.
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~--~~~~~~~L~~  129 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD--FLSQIKTLVT  129 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG--GGGGCTTCCE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccc--cccchhhhcc
Confidence            4444444444443  2444555555555555543 445555555555555555555555544432211  1111222222


Q ss_pred             EECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccC-CeeeCcCCcCccCCchhhcCCCCCCEEE
Q 041562          396 LIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKL-QVLDLSFNQLTGSVPRFLGNMSSLFHID  474 (653)
Q Consensus       396 L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  474 (653)
                      ++++.|.+.+.+|...     ..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+.. ..++
T Consensus       130 l~l~~N~~~~~~p~~l-----~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~  203 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSI-----SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVD  203 (313)
T ss_dssp             EECCSSEEESCCCGGG-----GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEE
T ss_pred             cccccccccccCchhh-----ccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            2222222222222111     133444445555555544444444444443 44555555555444444444332 2455


Q ss_pred             ccCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeee
Q 041562          475 FSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLD  554 (653)
Q Consensus       475 Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~  554 (653)
                      ++++.+.+.+|.                                                       .++.++ .++.++
T Consensus       204 l~~~~~~~~~~~-------------------------------------------------------~~~~~~-~l~~l~  227 (313)
T d1ogqa_         204 LSRNMLEGDASV-------------------------------------------------------LFGSDK-NTQKIH  227 (313)
T ss_dssp             CCSSEEEECCGG-------------------------------------------------------GCCTTS-CCSEEE
T ss_pred             cccccccccccc-------------------------------------------------------cccccc-cccccc
Confidence            555444444443                                                       334444 789999


Q ss_pred             cCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCC
Q 041562          555 LSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCG  634 (653)
Q Consensus       555 Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~  634 (653)
                      +++|.+.+.+| .++.+++|+.|||++|+++|.+|+.+.++++|++|+|++|+++|.||+.+.+.+++...+.||+.+||
T Consensus       228 ~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         228 LAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             ccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccC
Confidence            99999997765 68899999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             CCCCCCCC
Q 041562          635 AIVQRSCS  642 (653)
Q Consensus       635 ~~~~~~c~  642 (653)
                      .|+ +.|.
T Consensus       307 ~pl-p~c~  313 (313)
T d1ogqa_         307 SPL-PACT  313 (313)
T ss_dssp             TTS-SCCC
T ss_pred             CCC-CCCC
Confidence            997 6783

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.6e-27  Score=248.28  Aligned_cols=341  Identities=24%  Similarity=0.274  Sum_probs=197.8

Q ss_pred             CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562          171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  250 (653)
                      +.+|++|+++++.++..  ..+..+++|++|++++|++++. | .+.++++|++|++++|.+.+..  .++.+++|+.|+
T Consensus        43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~  116 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  116 (384)
T ss_dssp             HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             hCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccccc--cccccccccccc
Confidence            34555555555555421  2345555556666666555532 2 2555666666666666655322  255666666666


Q ss_pred             cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562          251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      ++++.+++..  .......+.......+.+....+...................      ..+.............|...
T Consensus       117 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  188 (384)
T d2omza2         117 LFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL------KPLANLTTLERLDISSNKVS  188 (384)
T ss_dssp             CCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC------GGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--cccccccccccccccccccccccccccccccccccccccchh------hhhccccccccccccccccc
Confidence            6666655432  223344555555555554432221111111111111111111      12333344444444444332


Q ss_pred             ccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCc
Q 041562          331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDN  410 (653)
Q Consensus       331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  410 (653)
                        ....+..+++++.+++++|.+++..+  +...++|++|++++|.++.++    .+..+++|+.+++++|.+.+..+  
T Consensus       189 --~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--  258 (384)
T d2omza2         189 --DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--  258 (384)
T ss_dssp             --CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             --cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc----hhhcccccchhccccCccCCCCc--
Confidence              23344555666666666666654332  344556666666666665432    34555666666666666554322  


Q ss_pred             ccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccC
Q 041562          411 DRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCR  490 (653)
Q Consensus       411 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  490 (653)
                           +..+++|++|+++++++++..  .+..++.++.+++++|++.+.  ..+..+++++.|++++|++++..+  +..
T Consensus       259 -----~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~  327 (384)
T d2omza2         259 -----LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSS  327 (384)
T ss_dssp             -----GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGG
T ss_pred             -----ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--ccc
Confidence                 245677888888888887433  266778888888888888753  346778888888888888875322  222


Q ss_pred             CCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCcccccccccc
Q 041562          491 LPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQ  570 (653)
Q Consensus       491 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~  570 (653)
                      ++                                                        +|++|++++|++++ ++ .+++
T Consensus       328 l~--------------------------------------------------------~L~~L~L~~n~l~~-l~-~l~~  349 (384)
T d2omza2         328 LT--------------------------------------------------------KLQRLFFANNKVSD-VS-SLAN  349 (384)
T ss_dssp             CT--------------------------------------------------------TCCEEECCSSCCCC-CG-GGGG
T ss_pred             CC--------------------------------------------------------CCCEEECCCCCCCC-Ch-hHcC
Confidence            22                                                        68888999998884 44 5888


Q ss_pred             CCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCC
Q 041562          571 LTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAEN  606 (653)
Q Consensus       571 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  606 (653)
                      +++|++||+++|++++..|  +.++++|++|+|++|
T Consensus       350 l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         350 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            8999999999999986554  788889999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=3.3e-26  Score=238.07  Aligned_cols=355  Identities=25%  Similarity=0.327  Sum_probs=218.1

Q ss_pred             ccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCC
Q 041562          128 LSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNY  207 (653)
Q Consensus       128 Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  207 (653)
                      ++.+.+++.++..   .+.+|++|+++++.++...    +...+++|++|++++|++++..  .++++++|++|++++|.
T Consensus        29 l~~~~~~~~~~~~---~l~~l~~L~l~~~~I~~l~----gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~   99 (384)
T d2omza2          29 LGKTNVTDTVSQT---DLDQVTTLQADRLGIKSID----GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQ   99 (384)
T ss_dssp             TTCSSTTSEECHH---HHTTCCEEECCSSCCCCCT----TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             hCCCCCCCccCHH---HhCCCCEEECCCCCCCCcc----ccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccc
Confidence            4444444444332   2445666666666655431    1224666666777666666432  26667777777777777


Q ss_pred             CCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCcc
Q 041562          208 LTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSS  287 (653)
Q Consensus       208 l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  287 (653)
                      +.+..  .+..+++|+.|+++++.+.+..+  ......+.......+.+....+.....  ..+........   .....
T Consensus       100 i~~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~---~~~~~  170 (384)
T d2omza2         100 IADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLT--SLQQLSFGNQV---TDLKP  170 (384)
T ss_dssp             CCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCT--TCSEEEEEESC---CCCGG
T ss_pred             ccccc--ccccccccccccccccccccccc--ccccccccccccccccccccccccccc--ccccccccccc---chhhh
Confidence            66432  26667777777777776664322  334455666666666554332221111  11111111111   11123


Q ss_pred             ccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCC
Q 041562          288 LKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSL  367 (653)
Q Consensus       288 l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  367 (653)
                      +...+.........|.... .  ..+..+++++.+++++|.+++..|  +..+++|++|++++|.+++.  +.+..+++|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~-~--~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L  243 (384)
T d2omza2         171 LANLTTLERLDISSNKVSD-I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNL  243 (384)
T ss_dssp             GTTCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred             hcccccccccccccccccc-c--cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhccccc
Confidence            3444445555555554431 1  134556667777777776664433  34456677777777776532  346666777


Q ss_pred             CEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCC
Q 041562          368 SFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQ  447 (653)
Q Consensus       368 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~  447 (653)
                      +.|++++|.++.++    .+..+++|+.++++.+.+.+..+       +..++.++.+++.+|.+++ + ..+..+++++
T Consensus       244 ~~L~l~~n~l~~~~----~~~~~~~L~~L~l~~~~l~~~~~-------~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~  310 (384)
T d2omza2         244 TDLDLANNQISNLA----PLSGLTKLTELKLGANQISNISP-------LAGLTALTNLELNENQLED-I-SPISNLKNLT  310 (384)
T ss_dssp             SEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCSC-C-GGGGGCTTCS
T ss_pred             chhccccCccCCCC----cccccccCCEeeccCcccCCCCc-------ccccccccccccccccccc-c-cccchhcccC
Confidence            77777777766543    25566777777777776654321       2466788999999999884 2 3478889999


Q ss_pred             eeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCccccccccccc
Q 041562          448 VLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKIL  527 (653)
Q Consensus       448 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (653)
                      .|++++|++.+..  .+..+++|++|++++|++++ ++ .+..++                                   
T Consensus       311 ~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~-----------------------------------  351 (384)
T d2omza2         311 YLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLT-----------------------------------  351 (384)
T ss_dssp             EEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCT-----------------------------------
T ss_pred             eEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCC-----------------------------------
Confidence            9999999998653  37889999999999999874 22 233332                                   


Q ss_pred             ccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCC
Q 041562          528 TFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKN  582 (653)
Q Consensus       528 ~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N  582 (653)
                                           +|++|++++|++++..|  ++++++|++|+|++|
T Consensus       352 ---------------------~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         352 ---------------------NINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ---------------------TCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ---------------------CCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence                                 78899999999997665  889999999999988

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=5.6e-24  Score=213.79  Aligned_cols=81  Identities=25%  Similarity=0.347  Sum_probs=40.2

Q ss_pred             CCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccC
Q 041562          222 LEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQS  301 (653)
Q Consensus       222 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  301 (653)
                      .+.++-++..++ .+|..+.  +++++|++++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            444555554444 3344332  3455555555555543333455555555555555555544444455555555555555


Q ss_pred             CcCc
Q 041562          302 NFFE  305 (653)
Q Consensus       302 n~l~  305 (653)
                      |+++
T Consensus        89 n~l~   92 (305)
T d1xkua_          89 NQLK   92 (305)
T ss_dssp             SCCS
T ss_pred             CccC
Confidence            5544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=7.8e-24  Score=212.71  Aligned_cols=244  Identities=25%  Similarity=0.323  Sum_probs=160.0

Q ss_pred             CCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEee
Q 041562          197 RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLH  276 (653)
Q Consensus       197 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  276 (653)
                      ..+.++.+++.++ .+|..+.  +++++|+|++|+|+...+.+|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            5677888888888 6787663  689999999999986555679999999999999999998878889999999999999


Q ss_pred             cCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccc--cCCccCcCCCCCCeEEccCcccc
Q 041562          277 NNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG--SLPITLNSCKSLTAVNLARNQLE  354 (653)
Q Consensus       277 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~  354 (653)
                      +|+++ .+|..+  ...++.|++.+|.+. .++...+.....++.++...|....  ..+..+..+++|+.+++++|.+.
T Consensus        88 ~n~l~-~l~~~~--~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SSCCS-BCCSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCccC-cCccch--hhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            99998 455543  357888999888887 4555566677777777777664331  22333444445555555544443


Q ss_pred             ccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcc
Q 041562          355 GQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG  434 (653)
Q Consensus       355 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  434 (653)
                      . ++..  ..++|++|++++|.                          .....+.     .+.+++.+++|++++|.+++
T Consensus       164 ~-l~~~--~~~~L~~L~l~~n~--------------------------~~~~~~~-----~~~~~~~l~~L~~s~n~l~~  209 (305)
T d1xkua_         164 T-IPQG--LPPSLTELHLDGNK--------------------------ITKVDAA-----SLKGLNNLAKLGLSFNSISA  209 (305)
T ss_dssp             S-CCSS--CCTTCSEEECTTSC--------------------------CCEECTG-----GGTTCTTCCEEECCSSCCCE
T ss_pred             c-cCcc--cCCccCEEECCCCc--------------------------CCCCChh-----Hhhccccccccccccccccc
Confidence            1 2211  12333333333333                          3222221     12345556666666666665


Q ss_pred             cchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcc
Q 041562          435 QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISG  482 (653)
Q Consensus       435 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  482 (653)
                      ..+.++.++++|++|+|++|+++ .+|..+..+++|++|+|++|+|+.
T Consensus       210 ~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         210 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             cccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence            55566666666666666666665 445566666666666666666653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.2e-24  Score=211.02  Aligned_cols=220  Identities=22%  Similarity=0.210  Sum_probs=114.3

Q ss_pred             cCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccC-CcC
Q 041562           81 LPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN-NSF  158 (653)
Q Consensus        81 L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~-n~l  158 (653)
                      .++.+++ .+|..+.  +.+++|+|++|+|+...+..|.. ++|++|++++|.+. .++...+..+..++.++... +.+
T Consensus        18 c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          18 CPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             CCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTC
T ss_pred             cCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-cccccccccccccccccccccccc
Confidence            3444444 4444432  45677777777776544444544 66666666666665 44444445555555555442 233


Q ss_pred             cccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccc
Q 041562          159 TGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKN  238 (653)
Q Consensus       159 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~  238 (653)
                      +...+..+.  ++++|++|++++|.+....+..+...++|+.+++++|.+++..+..+..+++|++|++++|.+.+..+.
T Consensus        94 ~~l~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          94 RSVDPATFH--GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             CCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccchhhc--ccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence            333332221  455555555555555544444455555555555555555543344444555555555555555544444


Q ss_pred             cccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCcc
Q 041562          239 GIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEG  306 (653)
Q Consensus       239 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  306 (653)
                      ++.++++|+++++++|++++..|..|..+++|++|++++|++.+..+..+..+++|++|++++|.+..
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            55555555555555555555445555555555555555555554444445555555555555555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.7e-23  Score=202.63  Aligned_cols=205  Identities=23%  Similarity=0.247  Sum_probs=134.3

Q ss_pred             CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEecc-CCcCcccccccccCCCCCcEEEc
Q 041562          173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLS-FNHISGSIKNGIVNLTSLRILEL  251 (653)
Q Consensus       173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls-~n~i~~~~~~~l~~l~~L~~L~L  251 (653)
                      .+++|+|++|+++...+..|.++++|++|++++|.+....+..+..++.++.++.. .+.+....+..+.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            34555555555554444455566666666666666655555555555666666543 34454444566667777777777


Q ss_pred             ccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccc
Q 041562          252 YSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG  331 (653)
Q Consensus       252 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~  331 (653)
                      ++|.+....+..+....+|+.+++++|.+++..+..|..+++|++|++++|.++ .++...|.++++|+++++++|++++
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc-ccchhhhccccccchhhhhhccccc
Confidence            777766555556666677777777777777555566667777777777777776 3444466777777777777777777


Q ss_pred             cCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562          332 SLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT  378 (653)
Q Consensus       332 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  378 (653)
                      ..|..|..+++|++|++++|++.+..+..+..+++|++|++++|.+.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            67777777777777777777777666667777777777777777664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.3e-22  Score=194.20  Aligned_cols=203  Identities=25%  Similarity=0.264  Sum_probs=126.0

Q ss_pred             ccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCC
Q 041562          313 FSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKN  392 (653)
Q Consensus       313 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~  392 (653)
                      +.....+.+++.+++.++ .+|..+.  +++++|+|++|++++..+..|..+++|++|+|++|+++.++.    +.    
T Consensus         6 ~~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~----~~----   74 (266)
T d1p9ag_           6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV----DG----   74 (266)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----CS----
T ss_pred             EcccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc----cc----
Confidence            344555666777777777 4565553  467778888887776655667777778888887777764331    12    


Q ss_pred             CcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCE
Q 041562          393 LKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFH  472 (653)
Q Consensus       393 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  472 (653)
                                               .+++|++|++++|+++ ..+..+..+++|+.|++++|++.+..+..+..+.++++
T Consensus        75 -------------------------~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~  128 (266)
T d1p9ag_          75 -------------------------TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE  128 (266)
T ss_dssp             -------------------------CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred             -------------------------cccccccccccccccc-ccccccccccccccccccccccceeecccccccccccc
Confidence                                     2345555555555555 23445555666666666666666555555566666666


Q ss_pred             EEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCe
Q 041562          473 IDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHM  552 (653)
Q Consensus       473 L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~  552 (653)
                      |++++|.++...+..+..++                                                        .|+.
T Consensus       129 L~l~~n~l~~l~~~~~~~l~--------------------------------------------------------~l~~  152 (266)
T d1p9ag_         129 LYLKGNELKTLPPGLLTPTP--------------------------------------------------------KLEK  152 (266)
T ss_dssp             EECTTSCCCCCCTTTTTTCT--------------------------------------------------------TCCE
T ss_pred             ccccccccceeccccccccc--------------------------------------------------------cchh
Confidence            66666666543333333222                                                        4556


Q ss_pred             eecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCccc
Q 041562          553 LDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR  609 (653)
Q Consensus       553 L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  609 (653)
                      |++++|++++..++.|+.+++|++|||++|+|+ .+|+++..+++|+.|+|++|++.
T Consensus       153 l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            666666666666666666666666666666666 56666666666666666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-21  Score=190.97  Aligned_cols=199  Identities=24%  Similarity=0.268  Sum_probs=129.4

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEE
Q 041562           98 THLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHL  177 (653)
Q Consensus        98 ~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L  177 (653)
                      ..+.+.|.++++++ .+|..+. +++++|+|++|+++ .+|...|..+++|++|+|++|.++...+.    ..+++|++|
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp-~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~~~----~~l~~L~~L   82 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP-KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPVLGTL   82 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC-TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTTCCEE
T ss_pred             CCCeEEEccCCCCC-eeCcCcC-cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccccccc----ccccccccc
Confidence            34444455555555 2343332 45666666666665 56655566677777777777776654321    246777777


Q ss_pred             EccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCC
Q 041562          178 DLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLT  257 (653)
Q Consensus       178 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  257 (653)
                      ++++|++++ .+..+..+++|++|++++|.+.+..+..+..+.++++|++++|.+....+..+..+++++++++++|+++
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            777777763 4556677777777777777776655566666777777777777776555566666777777777777777


Q ss_pred             cccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCc
Q 041562          258 GLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFE  305 (653)
Q Consensus       258 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  305 (653)
                      +..+..|+.+++|++|+|++|+++ .+|+.+..+++|+.|+|++|.+.
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            666666777777777777777776 56666666777777777777654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=2.8e-18  Score=175.02  Aligned_cols=305  Identities=28%  Similarity=0.327  Sum_probs=169.6

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEE
Q 041562           98 THLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHL  177 (653)
Q Consensus        98 ~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L  177 (653)
                      .++++|||+++.++ .+|+..  ++|++|+|++|+++ .+|..    ..+|+.|++++|.++....      -.+.|++|
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~~--~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~l~~------lp~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPELP--PHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKALSD------LPPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSCC--TTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCCCS------CCTTCCEE
T ss_pred             cCCCEEEeCCCCCC-CCCCCC--CCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccchhhh------hccccccc
Confidence            36889999999987 466532  67888999988888 77753    5678888888887765431      12357777


Q ss_pred             EccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCC
Q 041562          178 DLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLT  257 (653)
Q Consensus       178 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  257 (653)
                      ++++|.+. .+| .++.+++|++|+++++.+... +.   ....+..+.+..+...  ....+..++.++.+++++|...
T Consensus       104 ~L~~n~l~-~lp-~~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         104 GVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             ECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccccc-ccc-chhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceeccccccccc
Confidence            77777776 344 356677777777777766532 21   2345556666555443  2334555666666666666554


Q ss_pred             cccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccC
Q 041562          258 GLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITL  337 (653)
Q Consensus       258 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  337 (653)
                      .. +.   .....+.+...++.+. .++ .+..++.|+.+++++|... .++    ....++..+.+..+.+.. .+.  
T Consensus       176 ~~-~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~----~~~~~l~~~~~~~~~~~~-~~~--  241 (353)
T d1jl5a_         176 KL-PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLP----DLPPSLEALNVRDNYLTD-LPE--  241 (353)
T ss_dssp             SC-CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCC----SCCTTCCEEECCSSCCSC-CCC--
T ss_pred             cc-cc---cccccccccccccccc-ccc-ccccccccccccccccccc-ccc----cccccccccccccccccc-ccc--
Confidence            32 11   1122344444444433 222 2445556666666655443 122    123445555555554432 111  


Q ss_pred             cCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCC
Q 041562          338 NSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSAN  417 (653)
Q Consensus       338 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  417 (653)
                       ....+...++..+.+.                        .+...      .......++..+.+.+..         .
T Consensus       242 -~~~~l~~~~~~~~~~~------------------------~l~~l------~~~~~~~~~~~~~~~~~~---------~  281 (353)
T d1jl5a_         242 -LPQSLTFLDVSENIFS------------------------GLSEL------PPNLYYLNASSNEIRSLC---------D  281 (353)
T ss_dssp             -CCTTCCEEECCSSCCS------------------------EESCC------CTTCCEEECCSSCCSEEC---------C
T ss_pred             -cccccccccccccccc------------------------ccccc------cchhcccccccCcccccc---------c
Confidence             1223334444333332                        11110      012222333333322211         1


Q ss_pred             CCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCcc
Q 041562          418 GFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKE  487 (653)
Q Consensus       418 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  487 (653)
                      .+++|++|++++|+++ .+|.   .+++|+.|++++|+|+ .+|.   .+++|++|++++|+++ .+|..
T Consensus       282 ~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~~  342 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDI  342 (353)
T ss_dssp             CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCCC
T ss_pred             cCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCcc
Confidence            3467788888888777 4554   3567888888888877 4554   2457888888888876 45543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=3.6e-18  Score=174.29  Aligned_cols=56  Identities=36%  Similarity=0.490  Sum_probs=27.4

Q ss_pred             ccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCC
Q 041562          549 LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP  613 (653)
Q Consensus       549 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  613 (653)
                      +|++|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|+.   +++|++|++++|+++ .+|
T Consensus       285 ~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp  340 (353)
T d1jl5a_         285 SLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFP  340 (353)
T ss_dssp             TCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCC
T ss_pred             CCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCC
Confidence            4555555555555 34432   344555555555554 34432   234555555555554 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.8e-21  Score=206.57  Aligned_cols=113  Identities=19%  Similarity=0.230  Sum_probs=71.2

Q ss_pred             CcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChh--hhhcCCCCCCEEEccCCcCccC----CCccCC-C
Q 041562          122 YIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWS--AWVDSFCSIRHLDLSNNRFTGP----VPLGLG-S  194 (653)
Q Consensus       122 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~-~  194 (653)
                      +|+.||+++|++++..-..++..++++++|+|++|.++......  .....+++|++|||++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            68899999999885444556667888889999888876422111  1233677888888888877531    112222 2


Q ss_pred             CCCCCEEEcccCCCCCC----ccccccCCCCCCEEeccCCcCcc
Q 041562          195 CSRLKTFRAGFNYLTGS----LPDDIYTATSLEQLSLSFNHISG  234 (653)
Q Consensus       195 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~i~~  234 (653)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.+..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            34577777777766543    33445566666666666666653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.3e-20  Score=199.96  Aligned_cols=388  Identities=19%  Similarity=0.160  Sum_probs=244.5

Q ss_pred             CCCEEECCCCCCCCCCCcc-ccC-CCcCEEEccCCCCCCCCch---HHHhcCCCCcEEEccCCcCcccCChhhh---hcC
Q 041562           99 HLSHLNLSHNRLSGEFPSS-LSS-NYIKIIDLSSNHFQGKIPS---TIFRLTQNLITFNVSNNSFTGLISWSAW---VDS  170 (653)
Q Consensus        99 ~L~~L~Ls~n~~~~~~p~~-~~~-~~L~~L~Ls~n~l~~~ip~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~~~  170 (653)
                      +|++||+++|++++..-.. +.. +++++|+|++|.++..-..   ..+..+++|++|||++|.++......+.   ...
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            6899999999998643222 222 8999999999998732221   2346789999999999998642211111   113


Q ss_pred             CCCCCEEEccCCcCccC----CCccCCCCCCCCEEEcccCCCCCCccccc----c-CCCCCCEEeccCCcCccc----cc
Q 041562          171 FCSIRHLDLSNNRFTGP----VPLGLGSCSRLKTFRAGFNYLTGSLPDDI----Y-TATSLEQLSLSFNHISGS----IK  237 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l----~-~l~~L~~L~Ls~n~i~~~----~~  237 (653)
                      .++|++|++++|.+++.    ++..+..+++|++|++++|.++......+    . ..............+...    ..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            45899999999999753    45568889999999999999875322221    1 223344555544443321    11


Q ss_pred             ccccCCCCCcEEEcccCcCCcccC----ccc-cCCCCCCeEEeecCcCccc----CCccccCCCCCcEEEccCCcCccc-
Q 041562          238 NGIVNLTSLRILELYSNSLTGLIP----RDI-GKLTNLESLVLHNNSLSGS----LPSSLKNCINLTLLNLQSNFFEGD-  307 (653)
Q Consensus       238 ~~l~~l~~L~~L~L~~n~l~~~~p----~~l-~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~-  307 (653)
                      ..+.....++.++++++......-    ..+ ..-.....+++..+.+...    ....+...+.++.+++.+|.+... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            234456778888888776643210    111 1223566777777765421    112345667888999988876421 


Q ss_pred             ---cChhhccCCCCcCEEEccCCccccc----CCccCcCCCCCCeEEccCccccccCchhh-----cCCCCCCEEECCCC
Q 041562          308 ---ISVFNFSTLLKLRVLDLGSNLFTGS----LPITLNSCKSLTAVNLARNQLEGQISPGI-----VALKSLSFLSLSNN  375 (653)
Q Consensus       308 ---i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n  375 (653)
                         ...........++.+++++|.+...    ....+...+.++.+++++|.+++.....+     .....|+.++++++
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               1112344567889999998887642    22334567888899999988865433322     23457889999988


Q ss_pred             CCCCCCcc--hhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCccc----chhhhcCCccCCee
Q 041562          376 SLTNITGA--IRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQ----VPSWIGKLKKLQVL  449 (653)
Q Consensus       376 ~l~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L  449 (653)
                      .++.....  ...+..+++|++|++++|.+++.........-....+.|++|+|++|.++..    ++..+..+++|++|
T Consensus       323 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L  402 (460)
T d1z7xw1         323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  402 (460)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             chhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEE
Confidence            87643211  1234566788888888887754211100000012346788999999988743    44556677889999


Q ss_pred             eCcCCcCccCCchh----hc-CCCCCCEEEccCCcCcccCCc
Q 041562          450 DLSFNQLTGSVPRF----LG-NMSSLFHIDFSNNLISGEFPK  486 (653)
Q Consensus       450 ~Ls~n~l~~~~~~~----~~-~l~~L~~L~Ls~N~l~~~~p~  486 (653)
                      +|++|+++......    +. +...|+.|++.+|.+......
T Consensus       403 ~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~  444 (460)
T d1z7xw1         403 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED  444 (460)
T ss_dssp             ECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             ECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHH
Confidence            99999887543332    22 344788999998888754443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=3.6e-17  Score=155.79  Aligned_cols=189  Identities=25%  Similarity=0.405  Sum_probs=93.9

Q ss_pred             cCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcC
Q 041562          241 VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLR  320 (653)
Q Consensus       241 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~  320 (653)
                      ..+.+|++|++.+|.++..  +.+..+++|++|++++|.+++..  .+..+++|+++++++|.++ .++  .+..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~--~l~~l~~L~  110 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS--AIAGLQSIK  110 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG--GGTTCTTCC
T ss_pred             HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-ccc--ccccccccc
Confidence            3444455555555554432  23445555555555555554322  2445555555555555444 232  344455555


Q ss_pred             EEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCC
Q 041562          321 VLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPL  400 (653)
Q Consensus       321 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~  400 (653)
                      .++++++...+.  ..+...+.++.+.++++.+...  ..+...++|++|++++|.++...                   
T Consensus       111 ~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~-------------------  167 (227)
T d1h6ua2         111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT-------------------  167 (227)
T ss_dssp             EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG-------------------
T ss_pred             cccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch-------------------
Confidence            555555544321  1233344445555544444322  12334444555555544443211                   


Q ss_pred             CCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccC
Q 041562          401 NFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSN  477 (653)
Q Consensus       401 n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  477 (653)
                                    .+.++++|++|++++|++++ ++. +.++++|++|++++|++++. + .+.++++|++|++++
T Consensus       168 --------------~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 --------------PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             --------------GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             --------------hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence                          12345566666666666663 332 66677777777777776643 2 266777777777653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4.2e-17  Score=155.31  Aligned_cols=186  Identities=25%  Similarity=0.334  Sum_probs=97.2

Q ss_pred             CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562          171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  250 (653)
                      +.+|++|++.+|.++. + ..+.++++|++|++++|.+++..|  +..+++|+++++++|.++. + ..+..+++|++++
T Consensus        40 l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccccc
Confidence            4455666666665553 2 235556666666666665553322  5556666666666665542 2 2355566666666


Q ss_pred             cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562          251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      ++++...+.  ..+...+.++.+.++++.+...  ..+..+++|++|++++|.+.+ .+  .++.+++|++|++++|+++
T Consensus       114 l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~-~~--~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         114 LTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD-LT--PLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             CTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--chhccccchhhhhchhhhhchh--hhhcccccccccccccccccc-ch--hhcccccceecccCCCccC
Confidence            666555433  2344455566666655555432  224455556666666655542 22  2455555555555555554


Q ss_pred             ccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECC
Q 041562          331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLS  373 (653)
Q Consensus       331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  373 (653)
                      + ++ .++++++|++|++++|++++. + .+..+++|++|+++
T Consensus       187 ~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         187 D-IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             C-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             C-Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEee
Confidence            3 22 245555555555555555532 2 24455555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=153.99  Aligned_cols=85  Identities=18%  Similarity=0.242  Sum_probs=39.7

Q ss_pred             CCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCccc-CccccCCCCCCeEEeec-CcCcccCCccccCCCCCcEEE
Q 041562          221 SLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLI-PRDIGKLTNLESLVLHN-NSLSGSLPSSLKNCINLTLLN  298 (653)
Q Consensus       221 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  298 (653)
                      ++++|++++|.|+...+.+|.++++|++|++++|.+.+.+ +..|..+++++++.+.. |.+....+..+.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4445555555544332334445555555555555444322 22344455555554432 344444444445555555555


Q ss_pred             ccCCcCc
Q 041562          299 LQSNFFE  305 (653)
Q Consensus       299 L~~n~l~  305 (653)
                      +++|.+.
T Consensus       110 l~~~~l~  116 (242)
T d1xwdc1         110 ISNTGIK  116 (242)
T ss_dssp             EESCCCC
T ss_pred             cchhhhc
Confidence            5555444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.7e-17  Score=158.41  Aligned_cols=46  Identities=20%  Similarity=0.164  Sum_probs=19.9

Q ss_pred             cCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeE
Q 041562          300 QSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAV  346 (653)
Q Consensus       300 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  346 (653)
                      ++|.++ .++...|.++++|++|++++|+++...+..+.++++|+.+
T Consensus       185 ~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         185 DNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             TCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             cccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            334443 3433344455555555555555543222233444444333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.1e-16  Score=148.30  Aligned_cols=162  Identities=26%  Similarity=0.330  Sum_probs=78.1

Q ss_pred             CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcc
Q 041562          173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY  252 (653)
Q Consensus       173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  252 (653)
                      +|++|++++|.++...  .+..+++|++|++++|.+++ ++ .+..+++|++|++++|++++ ++ .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            4444444444443211  23444445555555544443 22 23445555555555555542 22 34455555555555


Q ss_pred             cCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccccc
Q 041562          253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGS  332 (653)
Q Consensus       253 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~  332 (653)
                      +|.+...  ..+..+++++.+++++|.+++.  ..+..+++|+++++++|.++ .++  .+.++++|++|++++|.++. 
T Consensus       121 ~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~-~i~--~l~~l~~L~~L~Ls~N~i~~-  192 (210)
T d1h6ta2         121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIV--PLAGLTKLQNLYLSKNHISD-  192 (210)
T ss_dssp             TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCB-
T ss_pred             ccccccc--cccccccccccccccccccccc--cccccccccccccccccccc-ccc--cccCCCCCCEEECCCCCCCC-
Confidence            5554422  2345555555555555555421  23445555555555555554 232  24555555555555555552 


Q ss_pred             CCccCcCCCCCCeEEcc
Q 041562          333 LPITLNSCKSLTAVNLA  349 (653)
Q Consensus       333 ~~~~l~~l~~L~~L~L~  349 (653)
                      ++ .+.++++|++|+|+
T Consensus       193 l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CG-GGTTCTTCSEEEEE
T ss_pred             Ch-hhcCCCCCCEEEcc
Confidence            32 35555566666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=4.1e-17  Score=150.92  Aligned_cols=163  Identities=22%  Similarity=0.274  Sum_probs=122.5

Q ss_pred             CCcCEEEccCCcCcccc-hhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccc
Q 041562          420 KNLQVLGLAECKLKGQV-PSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQ  498 (653)
Q Consensus       420 ~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  498 (653)
                      +++++|+|++|++++.+ +..|..+++|+.|++++|++.+..+..+..+++|++|+|++|++++..|..|.+++      
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~------  102 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH------  102 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT------
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCC------
Confidence            56888888888887543 55678889999999999999888888888899999999999999877777776654      


Q ss_pred             ccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEe
Q 041562          499 DKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMD  578 (653)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~Ld  578 (653)
                                                                        .|++|+|++|+|++..|+.|..+++|++|+
T Consensus       103 --------------------------------------------------~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~  132 (192)
T d1w8aa_         103 --------------------------------------------------QLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             --------------------------------------------------TCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             --------------------------------------------------cccccccCCccccccCHHHhcCCccccccc
Confidence                                                              678899999999988888899999999999


Q ss_pred             CCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCCCCCCCCC
Q 041562          579 LSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSC  641 (653)
Q Consensus       579 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~~~~c  641 (653)
                      |++|.+....+.. .-...++.+.+..|.+.+..|..  ++...-..+..|..-|..+-...|
T Consensus       133 L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~--l~~~~l~~L~~n~l~C~~~~~~g~  192 (192)
T d1w8aa_         133 LASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSENSEGC  192 (192)
T ss_dssp             CTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC---CC
T ss_pred             ccccccccccchH-HHhhhhhhhcccCCCeEeCCChh--hcCCEeeecCHhhCcCCCCCCCCC
Confidence            9999987543321 11234667778888888777753  445555566777777865433333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.2e-16  Score=148.17  Aligned_cols=179  Identities=25%  Similarity=0.317  Sum_probs=91.1

Q ss_pred             EccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccC
Q 041562          127 DLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFN  206 (653)
Q Consensus       127 ~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  206 (653)
                      ++..+.+++.++..   .+.+|++|++++|.+++..+    ...+++|++|++++|++++..  .++.+++|++|++++|
T Consensus        30 ~l~~~~~~~~~~~~---~L~~L~~L~l~~~~i~~l~~----l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n  100 (210)
T d1h6ta2          30 NLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDEN  100 (210)
T ss_dssp             HTTCSCTTSEECHH---HHHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred             HhCcCccCCccCHH---HhcCccEEECcCCCCCCchh----HhhCCCCCEEeCCCccccCcc--ccccCccccccccccc
Confidence            34444444444432   13455555555555554332    123555555555555555322  2455555555555555


Q ss_pred             CCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCc
Q 041562          207 YLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPS  286 (653)
Q Consensus       207 ~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  286 (653)
                      ++++ +| .+..+++|+.|++++|.+..  ...+..+++++.+++++|.+++.  ..+..+++|+++++++|++++. + 
T Consensus       101 ~i~~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-  172 (210)
T d1h6ta2         101 KVKD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-  172 (210)
T ss_dssp             CCCC-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-
T ss_pred             cccc-cc-cccccccccccccccccccc--ccccccccccccccccccccccc--cccccccccccccccccccccc-c-
Confidence            5552 33 35555555555555555542  22355555555555555555432  2344555555555555555532 2 


Q ss_pred             cccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEcc
Q 041562          287 SLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLG  325 (653)
Q Consensus       287 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~  325 (653)
                      .+.++++|++|++++|.++ .++  .+..+++|++|+|+
T Consensus       173 ~l~~l~~L~~L~Ls~N~i~-~l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         173 PLAGLTKLQNLYLSKNHIS-DLR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             GGTTCTTCCEEECCSSCCC-BCG--GGTTCTTCSEEEEE
T ss_pred             cccCCCCCCEEECCCCCCC-CCh--hhcCCCCCCEEEcc
Confidence            2555555555555555554 343  35555555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=5.2e-16  Score=144.25  Aligned_cols=147  Identities=29%  Similarity=0.380  Sum_probs=68.4

Q ss_pred             CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562          171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE  250 (653)
Q Consensus       171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  250 (653)
                      +.++++|++++|.++..  ..+..+++|++|++++|++++..|  +.++++|++|++++|.+.. ++ .+.++++|++|+
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccccc
Confidence            34555555555555421  234445555555555555543221  4455555555555555442 11 244555555555


Q ss_pred             cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562          251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  330 (653)
                      ++++.....  ..+..+++|+.|++++|++.. + +.+..+++|++|++.+|.++ .++  .++++++|++|++++|+++
T Consensus       113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~-~l~--~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         113 LFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVT-DLK--PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--cccchhhhhHHhhhhhhhhcc-c-cccccccccccccccccccc-CCc--cccCCCCCCEEECCCCCCC
Confidence            555544432  234445555555555554442 1 23444455555555555444 222  2344444444444444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=7.2e-16  Score=143.23  Aligned_cols=161  Identities=25%  Similarity=0.356  Sum_probs=98.3

Q ss_pred             CCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCE
Q 041562          145 TQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQ  224 (653)
Q Consensus       145 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  224 (653)
                      ++++++|++++|.++....    .+.+++|++|++++|++++..  .++++++|++|++++|.+.. ++ .+..++.|++
T Consensus        39 l~~l~~L~l~~~~i~~l~~----l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~  110 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTG  110 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred             hcCCCEEECCCCCCCCccc----cccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc-cccccccccc
Confidence            4455556665555554321    124566666666666665432  26666666666666666652 33 3666677777


Q ss_pred             EeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcC
Q 041562          225 LSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFF  304 (653)
Q Consensus       225 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  304 (653)
                      |++++|.+...  ..+..+++|+.|++++|++...  +.+..+++|++|++.+|++++.  ..++++++|++|++++|++
T Consensus       111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKV  184 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCC
Confidence            77776666532  3466677777777777776532  3466677777777777777643  2366777777777777777


Q ss_pred             ccccChhhccCCCCcCEE
Q 041562          305 EGDISVFNFSTLLKLRVL  322 (653)
Q Consensus       305 ~~~i~~~~~~~l~~L~~L  322 (653)
                      + +++  .++.+++|++|
T Consensus       185 ~-~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         185 S-DIS--VLAKLTNLESL  199 (199)
T ss_dssp             C-CCG--GGGGCTTCSEE
T ss_pred             C-CCc--cccCCCCCCcC
Confidence            6 344  35666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=1.3e-16  Score=147.48  Aligned_cols=173  Identities=20%  Similarity=0.220  Sum_probs=104.9

Q ss_pred             CCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCc-cccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcc
Q 041562          174 IRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSL-PDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY  252 (653)
Q Consensus       174 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~  252 (653)
                      .++++.++++++ .+|..+.  +++++|+|++|.+++.+ +..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            346666666666 4555442  46667777777776433 3445667777777777777776666777777777777777


Q ss_pred             cCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccccc
Q 041562          253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGS  332 (653)
Q Consensus       253 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~  332 (653)
                      +|+++...|..|.++++|++|+|++|++++..+..|..+++|++|++++|.+........+.  ..++.+.+..+.++..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCG  164 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeC
Confidence            77777666666777777777777777777666666777777777777777766443322221  1233344444444443


Q ss_pred             CCccCcCCCCCCeEEccCcccc
Q 041562          333 LPITLNSCKSLTAVNLARNQLE  354 (653)
Q Consensus       333 ~~~~l~~l~~L~~L~L~~n~l~  354 (653)
                      .|..+   ..++.++++.|.+.
T Consensus       165 ~p~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         165 APSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             SSTTT---TTSBGGGSCTTTCC
T ss_pred             CChhh---cCCEeeecCHhhCc
Confidence            44322   23334444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.1e-16  Score=157.72  Aligned_cols=222  Identities=17%  Similarity=0.166  Sum_probs=132.3

Q ss_pred             EEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCc
Q 041562           78 HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNS  157 (653)
Q Consensus        78 ~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~  157 (653)
                      .+||++..+.+.....+.. ..+..+.++...........+...+|++||++++.+++.....++..+++|++|+++++.
T Consensus         4 ~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~   82 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR   82 (284)
T ss_dssp             EEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB
T ss_pred             EEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC
Confidence            5677777665433322221 245677777666654444444457888888888887765556677778888888888887


Q ss_pred             CcccCChhhhhcCCCCCCEEEccCC-cCccC-CCccCCCCCCCCEEEcccCC-CCCC-cccccc-CCCCCCEEeccCC--
Q 041562          158 FTGLISWSAWVDSFCSIRHLDLSNN-RFTGP-VPLGLGSCSRLKTFRAGFNY-LTGS-LPDDIY-TATSLEQLSLSFN--  230 (653)
Q Consensus       158 l~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~-~p~~l~-~l~~L~~L~Ls~n--  230 (653)
                      +.+.....+.  .+++|++|++++| .++.. +......+++|++|+++++. +++. +...+. ..+.|+.|+++++  
T Consensus        83 l~~~~~~~l~--~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          83 LSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             CCcHHHHHHh--cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            7665544433  5778888888875 34421 11123456777777777653 3321 122222 2356777777654  


Q ss_pred             cCccc-ccccccCCCCCcEEEcccC-cCCcccCccccCCCCCCeEEeecC-cCcccCCccccCCCCCcEEEccCC
Q 041562          231 HISGS-IKNGIVNLTSLRILELYSN-SLTGLIPRDIGKLTNLESLVLHNN-SLSGSLPSSLKNCINLTLLNLQSN  302 (653)
Q Consensus       231 ~i~~~-~~~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n  302 (653)
                      .++.. +.....++++|++|++++| .+++.....++++++|++|++++| .+++.....++++++|+.|+++++
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            23321 2223345667777777665 355555556666677777777764 455444445666666666666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.4e-16  Score=151.63  Aligned_cols=38  Identities=26%  Similarity=0.272  Sum_probs=16.5

Q ss_pred             ccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccC
Q 041562          313 FSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLAR  350 (653)
Q Consensus       313 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  350 (653)
                      +..+++|++|+++++.+++..+..++.+++|++|++++
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            33444444444444444433333344444444444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=1.1e-14  Score=147.68  Aligned_cols=40  Identities=10%  Similarity=-0.031  Sum_probs=20.3

Q ss_pred             cCCCCcEEEccCCcCcccCChhh--hhcCCCCCCEEEccCCc
Q 041562          144 LTQNLITFNVSNNSFTGLISWSA--WVDSFCSIRHLDLSNNR  183 (653)
Q Consensus       144 ~l~~L~~L~Ls~n~l~~~~~~~~--~~~~l~~L~~L~Ls~n~  183 (653)
                      ....|++|+|++|.+.......+  .....++|+.++++++.
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~   70 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF   70 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCc
Confidence            35667777777766543321111  12234556666665554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=2.4e-14  Score=145.16  Aligned_cols=65  Identities=17%  Similarity=0.095  Sum_probs=37.7

Q ss_pred             CCcCEEEccCCCCCCCCchHH---HhcCCCCcEEEccCCcCcccC---Chhh-----hhcCCCCCCEEEccCCcCc
Q 041562          121 NYIKIIDLSSNHFQGKIPSTI---FRLTQNLITFNVSNNSFTGLI---SWSA-----WVDSFCSIRHLDLSNNRFT  185 (653)
Q Consensus       121 ~~L~~L~Ls~n~l~~~ip~~~---~~~l~~L~~L~Ls~n~l~~~~---~~~~-----~~~~l~~L~~L~Ls~n~l~  185 (653)
                      ..|+.|+|++|.+...-...+   +...++|+.++++++......   +...     ....+++|++|++++|.++
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            778899999888764333333   234678888888877543221   1111     1123455666666666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.2e-13  Score=122.93  Aligned_cols=106  Identities=22%  Similarity=0.177  Sum_probs=42.1

Q ss_pred             CCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEe
Q 041562          196 SRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVL  275 (653)
Q Consensus       196 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  275 (653)
                      .++++|++++|+|+ .++..+..+++|++|++++|.|+. + +.+..+++|++|++++|+++...+..+..+++|++|++
T Consensus        18 ~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            33444444444443 223333334444444444444432 2 12344444444444444444332222333444444444


Q ss_pred             ecCcCcccCC-ccccCCCCCcEEEccCCcC
Q 041562          276 HNNSLSGSLP-SSLKNCINLTLLNLQSNFF  304 (653)
Q Consensus       276 ~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l  304 (653)
                      ++|++..... ..+..+++|++|++++|.+
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             ccccccccccccccccccccchhhcCCCcc
Confidence            4444432100 1233444444444444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.4e-13  Score=122.50  Aligned_cols=111  Identities=22%  Similarity=0.169  Sum_probs=54.5

Q ss_pred             ccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCc
Q 041562          216 IYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLT  295 (653)
Q Consensus       216 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  295 (653)
                      +.+..++++|+|++|+|+ .++..+..+++|++|++++|+++..  +.+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            344555566666666655 2344444555555555555555532  2355555555555555555533333334455555


Q ss_pred             EEEccCCcCccccCh-hhccCCCCcCEEEccCCccc
Q 041562          296 LLNLQSNFFEGDISV-FNFSTLLKLRVLDLGSNLFT  330 (653)
Q Consensus       296 ~L~L~~n~l~~~i~~-~~~~~l~~L~~L~L~~n~l~  330 (653)
                      +|++++|.++. ++. ..+..+++|++|++++|.++
T Consensus        91 ~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cceeccccccc-cccccccccccccchhhcCCCccc
Confidence            55555555542 211 23344444444444444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=5.2e-13  Score=112.79  Aligned_cols=86  Identities=30%  Similarity=0.456  Sum_probs=35.0

Q ss_pred             ccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccC-CccccCCCCC
Q 041562          216 IYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSL-PSSLKNCINL  294 (653)
Q Consensus       216 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L  294 (653)
                      +..+++|++|++++|.++ .+|..++.+++|++|++++|++++. | .++.+++|++|++++|+++... ...+..+++|
T Consensus        16 l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCC
Confidence            333444444444444443 2333344444444444444444422 1 2444444444444444443211 1233444444


Q ss_pred             cEEEccCCcC
Q 041562          295 TLLNLQSNFF  304 (653)
Q Consensus       295 ~~L~L~~n~l  304 (653)
                      +.|++++|.+
T Consensus        93 ~~L~l~~N~i  102 (124)
T d1dcea3          93 VLLNLQGNSL  102 (124)
T ss_dssp             CEEECTTSGG
T ss_pred             CEEECCCCcC
Confidence            4444444444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=6e-13  Score=112.38  Aligned_cols=77  Identities=25%  Similarity=0.314  Sum_probs=33.5

Q ss_pred             EEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCc
Q 041562          224 QLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNF  303 (653)
Q Consensus       224 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  303 (653)
                      +|++++|+++ .++ .+..+++|++|++++|+++ .+|..++.+++|++|++++|.+++ +| .++.+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            4444555444 222 2444444444444444444 233344444444444444444442 22 24444444444444444


Q ss_pred             Cc
Q 041562          304 FE  305 (653)
Q Consensus       304 l~  305 (653)
                      ++
T Consensus        77 i~   78 (124)
T d1dcea3          77 LQ   78 (124)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.8e-11  Score=106.46  Aligned_cols=105  Identities=21%  Similarity=0.171  Sum_probs=59.4

Q ss_pred             CEEEcccCCCCCCccccccCCCCCCEEeccCC-cCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeec
Q 041562          199 KTFRAGFNYLTGSLPDDIYTATSLEQLSLSFN-HISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHN  277 (653)
Q Consensus       199 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  277 (653)
                      +.++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|++++|+++...+..|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            33444444444 34445555566666666544 35544445566666666666666666655555666666666666666


Q ss_pred             CcCcccCCccccCCCCCcEEEccCCcCc
Q 041562          278 NSLSGSLPSSLKNCINLTLLNLQSNFFE  305 (653)
Q Consensus       278 n~l~~~~p~~l~~l~~L~~L~L~~n~l~  305 (653)
                      |+++ .+|.......+|++|+|++|.+.
T Consensus        90 N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCc-ccChhhhccccccccccCCCccc
Confidence            6666 33333333335666666666653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=1.5e-13  Score=126.81  Aligned_cols=111  Identities=23%  Similarity=0.249  Sum_probs=48.8

Q ss_pred             ccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCC
Q 041562          238 NGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLL  317 (653)
Q Consensus       238 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~  317 (653)
                      ..+..+++|++|++++|+++.. + .+..+++|++|++++|.++ .+|.....+++|++|++++|.++ .++  .+..++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~--~~~~l~  115 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS--GIEKLV  115 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH--HHHHHH
T ss_pred             hHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc--cccccc
Confidence            3444444555555555544422 2 3444455555555555444 23332233334555555555444 222  233444


Q ss_pred             CcCEEEccCCcccccCC-ccCcCCCCCCeEEccCcccc
Q 041562          318 KLRVLDLGSNLFTGSLP-ITLNSCKSLTAVNLARNQLE  354 (653)
Q Consensus       318 ~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~  354 (653)
                      +|+.|++++|.++.... ..+..+++|+.|++++|.+.
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccc
Confidence            45555555554442111 23444455555555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5e-11  Score=104.80  Aligned_cols=59  Identities=22%  Similarity=0.214  Sum_probs=34.0

Q ss_pred             ccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcc
Q 041562          549 LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNL  608 (653)
Q Consensus       549 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  608 (653)
                      .|+.|+|++|+|+...|..|..+++|++|||++|+++ .+|........|++|+|++|++
T Consensus        57 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          57 ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             ccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCcc
Confidence            4555666666666555556666666666666666666 3343333333566666666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.17  E-value=3.6e-13  Score=124.13  Aligned_cols=115  Identities=25%  Similarity=0.306  Sum_probs=77.5

Q ss_pred             ccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCC
Q 041562          212 LPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNC  291 (653)
Q Consensus       212 ~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  291 (653)
                      ++..+..+++|++|+|++|.|+. ++ .+..+++|++|++++|.++. +|..+..+++|++|++++|+++..  ..+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccccc--cccccc
Confidence            44566667777777777777763 33 46777777777777777763 344444456677788887777643  346677


Q ss_pred             CCCcEEEccCCcCccccC-hhhccCCCCcCEEEccCCccccc
Q 041562          292 INLTLLNLQSNFFEGDIS-VFNFSTLLKLRVLDLGSNLFTGS  332 (653)
Q Consensus       292 ~~L~~L~L~~n~l~~~i~-~~~~~~l~~L~~L~L~~n~l~~~  332 (653)
                      ++|+.|++++|.++. ++ ...+..+++|+.|++++|.+...
T Consensus       115 ~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         115 VNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccccccchhcc-ccccccccCCCccceeecCCCccccC
Confidence            778888888887763 32 23567788888888888877643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.1e-08  Score=86.33  Aligned_cols=37  Identities=30%  Similarity=0.260  Sum_probs=14.8

Q ss_pred             ccCeeecCCccCccccccccccCCCCCeEeCCCCeee
Q 041562          549 LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLS  585 (653)
Q Consensus       549 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  585 (653)
                      +|+.|||++|.|+...+-.+.....|+.|++++|+++
T Consensus        92 ~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          92 NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             TCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             cccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3444444444444322212222234444444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.3e-07  Score=81.39  Aligned_cols=86  Identities=27%  Similarity=0.209  Sum_probs=43.0

Q ss_pred             hhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhh
Q 041562          360 GIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSW  439 (653)
Q Consensus       360 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~  439 (653)
                      ....+++|++|++++|+++.+++....+.                             .+++|+.|++++|.++...+..
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~-----------------------------~l~~L~~L~Ls~N~i~~l~~l~  110 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQ-----------------------------KAPNLKILNLSGNELKSERELD  110 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHH-----------------------------HSTTCCCCCCTTSCCCCGGGHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHh-----------------------------hCCcccccccccCccccchhhh
Confidence            33456667777777777665543222121                             2344555555555555322222


Q ss_pred             hcCCccCCeeeCcCCcCccCCc-------hhhcCCCCCCEEE
Q 041562          440 IGKLKKLQVLDLSFNQLTGSVP-------RFLGNMSSLFHID  474 (653)
Q Consensus       440 l~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~  474 (653)
                      +.....|+.|++++|.+.....       ..+..+|+|+.||
T Consensus       111 ~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         111 KIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             hhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            2333456666666666654332       1234566666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.54  E-value=1.6e-05  Score=69.56  Aligned_cols=12  Identities=25%  Similarity=0.326  Sum_probs=6.4

Q ss_pred             cCCCCcEEEccC
Q 041562          144 LTQNLITFNVSN  155 (653)
Q Consensus       144 ~l~~L~~L~Ls~  155 (653)
                      +.+.|++|+|++
T Consensus        13 n~~~L~~L~L~~   24 (167)
T d1pgva_          13 DDTDLKEVNINN   24 (167)
T ss_dssp             TCSSCCEEECTT
T ss_pred             CCCCCcEEEeCC
Confidence            345555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.53  E-value=2e-05  Score=68.97  Aligned_cols=11  Identities=9%  Similarity=0.265  Sum_probs=7.2

Q ss_pred             CCcCEEEccCC
Q 041562          121 NYIKIIDLSSN  131 (653)
Q Consensus       121 ~~L~~L~Ls~n  131 (653)
                      ++|++|+|+++
T Consensus        15 ~~L~~L~L~~~   25 (167)
T d1pgva_          15 TDLKEVNINNM   25 (167)
T ss_dssp             SSCCEEECTTC
T ss_pred             CCCcEEEeCCC
Confidence            56777777653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.87  E-value=0.00014  Score=63.32  Aligned_cols=16  Identities=6%  Similarity=0.210  Sum_probs=7.8

Q ss_pred             CCCCCCEEEccCCcCc
Q 041562          170 SFCSIRHLDLSNNRFT  185 (653)
Q Consensus       170 ~l~~L~~L~Ls~n~l~  185 (653)
                      ..++|++|++++|.++
T Consensus        44 ~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TCCSCCEEECTTSCCC
T ss_pred             cCCccCeeeccCCccc
Confidence            3444555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.83  E-value=0.00016  Score=62.95  Aligned_cols=40  Identities=18%  Similarity=0.195  Sum_probs=16.5

Q ss_pred             CCCCCCEEeccCCcCcccc----cccccCCCCCcEEEcccCcCC
Q 041562          218 TATSLEQLSLSFNHISGSI----KNGIVNLTSLRILELYSNSLT  257 (653)
Q Consensus       218 ~l~~L~~L~Ls~n~i~~~~----~~~l~~l~~L~~L~L~~n~l~  257 (653)
                      ..++|++|++++|.+....    ...+...+.++.+++++|.+.
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            3444444444444443211    122233344444444444443