Citrus Sinensis ID: 041569

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MDETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEIKLRIYVCPLDVEGSSPLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLRLWTYV
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccEEEEEccccccccccEEEEEEEcccccccccHHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccEEEEccEEEEccccccccccEEEEEEEEEcHHHHcHHHHccccccEEEEEEEccccEEEEEcccccEEEEEEEEcccEEEEEcccccEEEEEEccEEEEEccccEEEEEEEEcccccccHHHHHHHHHHcccccccEEEEcccEEEEEcccccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccEEEccccccccccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEccccccEEcccHHEEcccEEEEEEEEEEccccccccHHHEEEEEEEEEccHHHHHHHHHcccHHHEEEEEEccccEEEEEEccccEEEEEEccccccEEEEEcccEEEEEEccccccEEEEEccccEEEEEEEEEccccccHHHHHHHHHHcHcccEEEEccccEEEEcccccEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
mdetvdqisdlppsIIHHIMTYLSAKEVTRTSILSTSwnqfqnsfpildfdlMNFIVRIEIKLRIYvcpldvegssplFDKWIELATENGLEVLDFMViadentyyalpQTIFSAKLLTSLKLvgcklelpsftCAHLKKLLlsefplndrelhhliskcplledlsishchslgrimissNKLEHLLISScyglnaldvdaprllsfifdlnpipiistnalcpwnvtldcdsnldcdWFLSLKEFLGASSQIERLCIDfssvetnsedatLHFLYKLRLWTYV
Flexible Loop (DISEMBL)
mdetvdqisdlppsiIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEIKLRIYVCPLDVEGSSPLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSvetnsedatlhflyklrlwtyv
Low Complexity Region (SEG)
MDETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEIKLRIYVCPLDVEGSSPLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLRLWTYV
Disordered region (IsUnstruct)
************PSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEIKLRIYVCPLDVEGSSPLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLRLWTY*
Disordered Region (DISOPRED)
*DETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEIKLRIYVCPLDVEGSSPLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLRLWTYV
Disordered Region (DISEMBL)
MDETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEIKLRIYVCPLDVEGSSPLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLRLWTYV
Disordered Region (DISPRO)
****VDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEIKLRIYVCPLDVEGSSPLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLRLWTYV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEIKLRIYVCPLDVEGSSPLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLRLWTYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q9FLA2	438	Putative F-box/FBD/LRR-re	yes	no	0.803	0.522	0.289	9e-13
Q9FZ70	416	F-box/FBD/LRR-repeat prot	no	no	0.6	0.411	0.301	6e-12
Q9LZ15	456	Putative F-box/LRR-repeat	no	no	0.877	0.548	0.269	1e-11
Q9LSJ3	465	Putative F-box/LRR-repeat	no	no	0.877	0.537	0.261	7e-11
Q9LXR6	457	Putative F-box protein At	no	no	0.705	0.439	0.285	3e-10
Q93ZX6	327	F-box/LRR-repeat protein	no	no	0.705	0.614	0.279	1e-09
Q9ZVA3	439	Putative F-box/FBD/LRR-re	no	no	0.894	0.580	0.259	1e-09
Q56XS8	456	F-box/FBD/LRR-repeat prot	no	no	0.705	0.440	0.284	1e-09
Q9FGQ3	444	F-box/FBD/LRR-repeat prot	no	no	0.694	0.445	0.299	2e-09
Q9FWZ1	451	F-box/LRR-repeat protein	no	no	0.698	0.441	0.260	2e-09

>sp|Q9FLA2|FDL34_ARATH Putative F-box/FBD/LRR-repeat protein At5g44950 OS=Arabidopsis thaliana GN=At5g44950 PE=4 SV=1

 Score = 74.3 bits (181), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 123/259 (47%), Gaps = 30/259 (11%)

Query: 6   DQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVR------- 58
           D+IS+LP  +++HI+ YL  +E  RTS+LS+ W +     P LD ++ +F          
Sbjct: 4   DRISELPDGLLNHILMYLHIEESIRTSVLSSRWRKLWLKVPGLDVNVHDFPADGNLFESL 63

Query: 59  ----IEI-KLRIYVCPLDVEGS----SPLFDKWIELATENGLEVLDFMVIADEN---TYY 106
               +E+ + R+    L+ E +       F  WI    + G++ LD  V A +    T  
Sbjct: 64  MDKFLEVNRGRLQNFKLNYESNLYYLMDRFVPWIATVVDRGIQHLD--VTATDCPPWTID 121

Query: 107 ALPQTIFSAKLLTSLKLVGCKLELPSFTCAH--LKKLLLSEFPLNDRELHHLISKCPLLE 164
            +P  I  +K L SLKLV   L+ P F  +   LK + L +   +     +LIS CP+LE
Sbjct: 122 FMPANICKSKTLVSLKLVNVGLDTPKFVVSLPCLKIMHLEDIFYSPLIAENLISGCPVLE 181

Query: 165 DLSISHCHS--LGRIMISSNKLEHLLISSCYGLN----ALDVDAPRLLSFIF-DLNPIPI 217
           DL+I   H   L  + + S  L++  ++  +G+     ++++DAP L    F D     I
Sbjct: 182 DLTIVRNHEDFLNFLRVMSQTLKNFRLTFDWGMGSNDFSVEIDAPGLKYMSFRDSQSDRI 241

Query: 218 ISTNALCPWNVTLDCDSNL 236
           +  N      + LD + NL
Sbjct: 242 VVKNLSSLVKIDLDTEFNL 260

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 25/196 (12%)

Query: 1   MDETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFD--------- 51
           M E+ D ISDLP SII +I+T LS ++  RTS+LS+ W    ++   L FD         
Sbjct: 1   MGESPDFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSND 60

Query: 52  -------LMNFIVRI----EIKLRIYVCPLDVEGSSPLFDKWIELATENGLEVLDFMVIA 100
                  L+ FI  +    +  +  +      +   P  D+W+   + NG++ L   +  
Sbjct: 61  RCVVETNLVRFITGVLLLHQGPIHKFQLSTSFKQCRPDIDQWLLFLSRNGIKELVLKLGE 120

Query: 101 DENTYYALPQTIFSAKLLTSLKLVGCKLELPSF--TCAHLKKLLLSEFPLNDRELHHLIS 158
            E   + +P  +F+   LT L+L  C+ + P +    ++LK L L +  +    +  LIS
Sbjct: 121 GE---FRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLIS 177

Query: 159 KCPLLEDLSISHCHSL 174
            CPLLE LS+S+  SL
Sbjct: 178 GCPLLEFLSLSYFDSL 193

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 128/282 (45%), Gaps = 32/282 (11%)

Query: 3   ETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEIK 62
           +  D I+ +P  I+HHI++++      RTS+LS  W       P LD  L +    +   
Sbjct: 24  DGADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDITLKHGA--MNQT 81

Query: 63  LRIYVCP--------LDVEGSS-PLFDKWIELATENGLEVLDFMVIADENTY---YALPQ 110
           L  Y  P        +D+  ++ P  D WIE A    ++ L   V   + TY   Y  P 
Sbjct: 82  LTSYTAPIITSFKLVMDLNSNTVPQVDSWIEFALSRNVQNLS--VFVRDFTYSKTYRFPD 139

Query: 111 TIFSAKLLTSLKLVGCKLE----LPSFTCA--HLKKLLLSEFPLNDRELHHLISKCPLLE 164
             +   L +SLKL+   L+    +P+ T +   L+ L L    + D  +H+++S CP+LE
Sbjct: 140 IFY---LSSSLKLLDVTLDFFDMIPTCTVSWKSLRNLTLRFCQIPDESIHNILSGCPILE 196

Query: 165 DLSISHCHSLGRIMIS-SNKLEHLLISSCYGLNA-LDVDAPRL--LSFIFDLNPIPIIST 220
            L++  C  L R+ +S S  L  L I+  Y     + + AP +  L   +   P  I+  
Sbjct: 197 SLTLDTCRLLERLDLSKSPNLRRLDINQQYRRTGPVAIVAPHIYYLRLTYSSTPSTIVDV 256

Query: 221 NALCPWNVTLDCD--SNLDCDWFLSLK-EFLGASSQIERLCI 259
           ++L   N+T+     S L  D + ++  E L     ++RL +
Sbjct: 257 SSLSEANLTIISSLLSPLTADGYQTMALEMLSKFHNVKRLTV 298

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ3|FBL48_ARATH Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana GN=At3g28410 PE=4 SV=2

 Score = 68.2 bits (165), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 122/283 (43%), Gaps = 33/283 (11%)

Query: 3   ETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEIK 62
           +  D I+ +P  I+HHI++++      RTS+LS  W       P LD  L +        
Sbjct: 25  DGADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIKLKHG--ETNQT 82

Query: 63  LRIYVCPLDV---------EGSSPLFDKWIELATENGLEVLDFMVIADENTY---YALPQ 110
           L  Y  P+           + + P  D WIE A    ++ L   V   + TY   Y  P 
Sbjct: 83  LTSYTAPIITSFKLVMDLNDNTVPQVDSWIEFALSRNVQNLS--VFVRDFTYTKTYRFPD 140

Query: 111 TIFSAKLLTSLKLVGCKLELPSF--TCA----HLKKLLLSEFPLNDRELHHLISKCPLLE 164
             + +   +SLK +   L+      TCA     L+ L L    + D  +H+++S CP+LE
Sbjct: 141 IFYIS---SSLKQLDVTLDFFDMIPTCAVSWKSLRNLTLRFCQIPDESMHNILSGCPILE 197

Query: 165 DLSISHCHSLGRIMIS-SNKLEHLLISSCYGLNA-LDVDAPRL--LSFIFDLNPIPIIST 220
            L++  C  L R+ +S S  L  L I+  Y     + + AP +  L   +   P  I+  
Sbjct: 198 SLTLDTCRLLERLDLSKSPNLRRLDINRQYRRTGPIAIVAPHIYYLRLTYSSTPSTIVDV 257

Query: 221 NALCPWNVTLDCD---SNLDCDWFLSLK-EFLGASSQIERLCI 259
           ++L   N+ +  D   S L  D + ++  E L     ++RL +
Sbjct: 258 SSLSEANLNIISDRLLSPLTADRYQTMALEMLSKFHNVKRLTV 300

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR6|FB207_ARATH Putative F-box protein At3g58860 OS=Arabidopsis thaliana GN=At3g58860 PE=4 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)

Query: 3   ETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEIK 62
           E +D  S LP  +I HI++ L  KE   TS+L+  W       P LDF+  +F+   E K
Sbjct: 4   EKMDLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHPQEGK 63

Query: 63  ------LRIYVCPLD----VEGSSPL---------------FDKWIELATENGLEVLDFM 97
                 LR ++  +D    ++G+SP+                D+WI    + G+  L   
Sbjct: 64  REKDGILRSFMDFVDRVLALQGASPIKKFSLNVKTGVDPDRVDRWICNVLQRGVSHLALF 123

Query: 98  VIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDREL 153
           +  +E   Y+LP  I  +K L  LK  G  ++L           LK L+L        + 
Sbjct: 124 MDFEEE--YSLPYEISVSKTLVELK-TGYGVDLYLWDDDMFLPMLKTLVLESVEFGRGQF 180

Query: 154 HHLISKCPLLEDLSISHCHSLGR-IMISSNKLEHLLISSCYG-LNALDVDAPRLL 206
             L+  CP+LE+L + +     R +++SS+ L++L I+S  G L  L  D P L+
Sbjct: 181 QTLLPACPVLEELMLLNMEWKDRNVILSSSSLKNLKITSEDGCLGTLSFDTPNLV 235

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZX6|FBL57_ARATH F-box/LRR-repeat protein At3g58900 OS=Arabidopsis thaliana GN=At3g58900 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 105/243 (43%), Gaps = 42/243 (17%)

Query: 5   VDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFD------------- 51
           +D  S LP  +++HI+++LS KE   TS+LS  W       P L+FD             
Sbjct: 1   MDLFSSLPNELLYHILSFLSTKEAALTSVLSKRWRNLFAFVPYLEFDDSVFLHPEERKRE 60

Query: 52  -------LMNFIVRI-------EIKLRIYVCPLDVEGSSPLFDKWIELATENGLEVLDFM 97
                   M+F+ R+        IK     C   V+  S   D+WI      G+  LD  
Sbjct: 61  KEGILQSFMDFVDRVLDLHGDSLIKTFSLKCKTGVD--SDHVDRWICNVLARGVSDLDLF 118

Query: 98  VIADENTYYALPQTIFSAKLLTSLKLVGCKLEL---PSFTC-AHLKKLLLSEFPLNDREL 153
           +  D    Y+LP  +  ++ L  L+ VG + +L     F C   LK L+L    L   + 
Sbjct: 119 I--DFRDLYSLPHEVGVSRTLVVLR-VGSESDLYWWQKFLCLPMLKTLVLDSCWLCIGQF 175

Query: 154 HHLISKCPLLEDLSISHCH-SLGRIMISSNKLEHLLIS-----SCYGLNALDVDAPRLLS 207
             L+  CP LE+L +++       + +SS+ L+ L I      S   L +L  DAP L+ 
Sbjct: 176 QILLLACPALEELDMTNTRWKDSNVTVSSSILKELTIDLHGCCSVVNLKSLSFDAPSLVY 235

Query: 208 FIF 210
           F +
Sbjct: 236 FYY 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVA3|FDL12_ARATH Putative F-box/FBD/LRR-repeat protein At1g78840 OS=Arabidopsis thaliana GN=At1g78840 PE=4 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 127/301 (42%), Gaps = 46/301 (15%)

Query: 3   ETVDQISDL-PPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVR--- 58
           E  D IS L P  ++H I+  L+ K+  +TSILST W       P LD +  NF  +   
Sbjct: 2   ENKDLISQLLPDHVLHEILLKLATKDSVKTSILSTRWRYIWQRVPGLDLNQTNFRYKGLK 61

Query: 59  --------IEIKLRIYVCPLDVEG-----SSPLFDKWIELATENGLEVLDFMVIADENTY 105
                   ++ K  IY   L+ +G        LF+KW++     G++ L        N Y
Sbjct: 62  GFVNRFLDLDKKSLIYQLKLEFDGRKYETEGSLFNKWVDSVVTRGVQHL-------VNNY 114

Query: 106 --YALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKL----LLSEFPLNDRELHHLISK 159
               LP +I   + L  LKLV   ++  SF    L +L    LLS +  ++  L  LIS 
Sbjct: 115 CPIKLPGSISMCETLVHLKLVEVGID--SFDSVSLPRLETMHLLSVWFSSEAALERLISS 172

Query: 160 CPLLEDLSISHCHSLGRIMISSNKLEHLLI---------SSCYGLNALDVDAPRLLSFIF 210
            P+L+ L I    ++  I + S  L  L +         +       L +DAPRL S   
Sbjct: 173 SPVLQVLYIEKVWNVEVIRVRSQTLYSLRMRIWKRDLDWNKDLTKIGLVIDAPRLKSLNL 232

Query: 211 DLNPIPIISTNALC-PWNVTLDCDSN----LDCDWFLSLKEFLGASSQIERLCIDFSSVE 265
            ++    +  N++C P  V +         ++     +L+ F+   S +  L +++  +E
Sbjct: 233 QIHRFKDLVLNSVCSPLKVDISISKGEFNPINSLTMKTLRTFIAWISNVTNLALNYCCLE 292

Query: 266 T 266
            
Sbjct: 293 A 293

Arabidopsis thaliana (taxid: 3702)

>sp|Q56XS8|FDL2_ARATH F-box/FBD/LRR-repeat protein At1g13780 OS=Arabidopsis thaliana GN=At1g13780 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 104/250 (41%), Gaps = 49/250 (19%)

Query: 1   MDETV----DQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQ---------------- 40
           M+ TV    D+IS+LP S+I  I+ +L  K   +TS+LST W                  
Sbjct: 1   MESTVMPGFDRISELPESLISQILLHLPTKASVKTSVLSTRWKNLWLNVPGLDLNCRDFP 60

Query: 41  FQNSFPILDFDLMNFIVRIEIKLRIYVCPLDVEGSSPL-FDKWIELATENGLEVLDFMVI 99
           FQN+   L  D ++  ++   + R+    +D      + F   I  A   G+ VLD    
Sbjct: 61  FQNNNEKLLIDFIDRFLQFNNESRLQKFKVDYSRDKIIKFSDRIGDAISRGIRVLD---- 116

Query: 100 ADENTYYA-------------LPQTIFSAKLLTSLKLVGCKLELPSFT-CAHLKKLLLSE 145
            + NTYY              +P  ++S K L SLKL    LE P F     LK + L E
Sbjct: 117 VESNTYYRDADDCIDYPCIEFMPLNLYSCKTLVSLKLSYSGLEDPGFVYLPCLKFMHLRE 176

Query: 146 FPLNDR---ELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYGLN------ 196
              +      L  L+S CP+LE+L   H   L    + S  L+   I   + L+      
Sbjct: 177 VRWDSSGTMNLEKLVSGCPVLEELIYLHDDKLVVTRVRSRSLKRFSIPFRHKLSLFRRVT 236

Query: 197 -ALDVDAPRL 205
              ++DAP L
Sbjct: 237 QTFEIDAPGL 246

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGQ3|FDL37_ARATH F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidopsis thaliana GN=At5g53840 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 29/227 (12%)

Query: 6   DQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFD---LMNFIVRIEI- 61
           +++S LP  +I  I+++LS K+  RTSILST W       P+LDFD   L +F   +   
Sbjct: 18  ERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFDSRELRSFSEFVSFA 77

Query: 62  -------------KLRIYVCPLDVEGSSPLFDKWIELATENGLEVLDFMVIADENTYYAL 108
                        KLR  VC  D+ G+  L   WI+L T + ++ +D  V      +  +
Sbjct: 78  GSFFYLHKDSYIQKLR--VCIYDLAGNYYL-TSWIDLVTRHRIQHIDISVFTCSG-FGVI 133

Query: 109 PQTIFSAKLLTSLKL---VGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED 165
           P ++++   L  LKL       +E  S  C  +  L    F  N+  L  +IS  P+LE+
Sbjct: 134 PLSLYTCDTLVHLKLSRVTMVNVEFVSLPCLKILDLDFVNFT-NETTLDKIISCSPVLEE 192

Query: 166 LSI--SHCHSLGRIMISSNKLEHLLISSCYGL-NALDVDAPRLLSFI 209
           L+I  S   ++  I + S  L+ + I   +   N L +D P LL F+
Sbjct: 193 LTIVKSSEDNVKIIQVRSQTLKRVEIHRRFDRHNGLVIDTP-LLQFL 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWZ1|FBL13_ARATH F-box/LRR-repeat protein 13 OS=Arabidopsis thaliana GN=FBL13 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 104/234 (44%), Gaps = 35/234 (14%)

Query: 3   ETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFP---------------- 46
           + VD IS LP  ++  ++  L  K+V +TS+LS  W       P                
Sbjct: 15  DEVDWISKLPDCLLCEVLLNLPTKDVVKTSVLSRRWRNLWKHVPGLDLDNTDFQEFNTFL 74

Query: 47  -----ILDFDLMNFIVRIEIKLRIYVCPLDVEGSSPLFDKWIELATENGLEVLDFMVIAD 101
                 LDF+  +F+ +  +K   Y C  + +    L  +WI       ++ +D +  + 
Sbjct: 75  SFVDSFLDFNSESFLQKFILK---YDCDDEYDPDIFLIGRWINTIVTRKVQHIDVLDDSY 131

Query: 102 ENTYYALPQTIFSAKLLTSLKLVGCKLELPSFT---CAHLKKLLLSEFPLNDRELHHLIS 158
            +    LP +I++ + L SLKL G  L  P F       +  L++++F  +D  L  LI+
Sbjct: 132 GSWEVQLPSSIYTCESLVSLKLCGLTLASPEFVSLPSLKVMDLIITKFA-DDMGLETLIT 190

Query: 159 KCPLLEDLSI--SHCHSLGRIMISSNKLEHL--LISSCYGLN---ALDVDAPRL 205
           KCP+LE L+I  S C  +  + + S  L     +  S  G+     + +DAP+L
Sbjct: 191 KCPVLESLTIERSFCDEIEVLRVRSQSLLRFTHVADSDEGVVEDLVVSIDAPKL 244

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
255590973	337	conserved hypothetical protein [Ricinus	0.712	0.602	0.312	4e-24
356557323	833	PREDICTED: uncharacterized protein LOC10	0.733	0.250	0.298	6e-21
147810265	310	hypothetical protein VITISV_027852 [Viti	0.736	0.677	0.323	8e-21
224121624	528	predicted protein [Populus trichocarpa]	0.747	0.403	0.306	9e-21
225442254	520	PREDICTED: putative F-box protein At3g44	0.736	0.403	0.323	1e-20
297743071	552	unnamed protein product [Vitis vinifera]	0.736	0.380	0.323	1e-20
147833276	521	hypothetical protein VITISV_011919 [Viti	0.750	0.410	0.311	8e-19
449476919	575	PREDICTED: uncharacterized protein LOC10	0.715	0.354	0.326	1e-17
449458245	575	PREDICTED: uncharacterized protein LOC10	0.715	0.354	0.326	1e-17
357454739	607	F-box/FBD/LRR-repeat protein [Medicago t	0.726	0.341	0.297	3e-15

>gi|255590973|ref|XP_002535407.1| conserved hypothetical protein [Ricinus communis] gi|223523200|gb|EEF26976.1| conserved hypothetical protein [Ricinus communis]

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 134/256 (52%), Gaps = 53/256 (20%)

Query: 3   ETVDQISDLPPSIIHHIMTYLS-AKEVTRTSILSTSWNQFQNSFPILDFDLMNF-----I 56
           +++D IS LP  +IHHI++ L   K+  RTSILS  W     S+ ILDFD   F      
Sbjct: 67  DSIDLISQLPNHVIHHILSLLRCKKDAARTSILSKRWRAIWASYLILDFDQRKFQKQEKK 126

Query: 57  VR-----------IEI--------------------------KLRIYVCPLDVEGSSPLF 79
           VR           +EI                          K ++++   +VE S+ + 
Sbjct: 127 VRRLSSKSKKRKEVEINKKNEMFRAFVENTLRTHIEQDSGIQKFKLHLTSYNVELSAHV- 185

Query: 80  DKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTC---- 135
           D+WI  AT N ++ LD  + + ++  Y LPQT+F+A  +T+L++ GCKL     TC    
Sbjct: 186 DQWIGFATTNNIKDLDLYIPSKKDRCYNLPQTVFAASTITALRISGCKLR----TCIDIK 241

Query: 136 -AHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYG 194
            ++L+KL  ++  ++ + + +L+  CPL++DL + +C  L  +++SSNKL  + I  C+G
Sbjct: 242 LSNLQKLCFAKLRVDGQMIQNLMLSCPLIDDLRLIYCTGLKTLLLSSNKLYRVDIHFCHG 301

Query: 195 LNALDVDAPRLLSFIF 210
           L  ++V +P L +F +
Sbjct: 302 LKNVEVLSPNLQTFWY 317

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 32/241 (13%)

Query: 2   DETVDQISDLPPSIIHHIMTYL-SAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIE 60
           D +VD+IS  P  +IHHI+++L +  +  RTS+LS  W +   S+ +L FD   F  +I 
Sbjct: 156 DGSVDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDERKFAAKIG 215

Query: 61  -----------------------------IKLRIYVCPLDVEGSSPLFDKWIELATENGL 91
                                         KL +++   D+   +P  + W+ +A    +
Sbjct: 216 HEDSSNKGMMFRDYVSNSLLTSNAKNLQIRKLVLHMTSFDLLEDAPCLELWLNIAIYRNI 275

Query: 92  EVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLND 150
           + LD  V       Y LPQT+FS+K LT ++L GCKL    +    +L+KL L + PL +
Sbjct: 276 KELDLHVGIKNGECYTLPQTVFSSKTLTGIRLSGCKLGTCNNIKLPYLQKLYLRKIPLVE 335

Query: 151 RELHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLLISSCYGLNALDVDAPRLLSFI 209
             + +LIS C  +EDL I  C  L  + +S+  +L+   I  C  L  +++ AP L +F 
Sbjct: 336 NFIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRAEIHHCIQLKKVEISAPNLDTFW 395

Query: 210 F 210
           +
Sbjct: 396 Y 396

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810265|emb|CAN71448.1| hypothetical protein VITISV_027852 [Vitis vinifera]

 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 121/241 (50%), Gaps = 31/241 (12%)

Query: 1   MDETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQ--NSFPIL---------- 48
           M E  D+IS LP  I+  I++ L  KE+ RTS+LS +W +    +S  +L          
Sbjct: 1   MVEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFFHS 60

Query: 49  ---DFDLMNFIVRIEIKLRIYVCPL------------DVEGSSPLFDKWIELATENGLEV 93
              +FD+ +FI  I+  LR+    +            D+E  S L D WI+ A E  ++ 
Sbjct: 61  RRKNFDVSSFINAIDSSLRLRQKDVSLARLQLRLHLNDIESES-LIDSWIDAALERKVKE 119

Query: 94  LDFMVIADE-NTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDR 151
           LD  ++       Y LP  IFS   +T L L  C+LE+        L+KL L +   +++
Sbjct: 120 LDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEICGDVDLPALRKLCLRKILCDEQ 179

Query: 152 ELHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLLISSCYGLNALDVDAPRLLSFIF 210
            +  LIS CPL+EDL I  C  L ++ +S    L  L+++ CY L  +++DAP L  F++
Sbjct: 180 AIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYNLRRIEIDAPSLQYFMY 239

Query: 211 D 211
           D
Sbjct: 240 D 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 133/271 (49%), Gaps = 58/271 (21%)

Query: 5   VDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDF-------------- 50
           +D IS  P  ++HHI+++L  K+V RTSILS  W    +++PILDF              
Sbjct: 1   MDHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQSSDAMY 60

Query: 51  -------------DLMNFI---------VRIEI-KLRIYVCPLDVEGSSPLFDKWIELAT 87
                          MN++          +  + K ++++   D+E SS L DKW++   
Sbjct: 61  SENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFLVLPDLELSSHL-DKWVQKVI 119

Query: 88  ENGLEVLDFMVIADENTY------YALPQTIFSAKLLTSLKLVGCKLELPSFTCAHL--- 138
           ENG + +DF +  D   Y      Y++P  IF+AK +T LKL GC ++L    C  L   
Sbjct: 120 ENGAKEVDFGI--DLPGYLHFKKPYSMPDAIFAAKSVTVLKLFGCNVKLEESFCIKLHSL 177

Query: 139 KKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS----NKLEHLLISSCYG 194
           +KL L E  ++D  L  +++ CPLLED+S+  C  L +I +       K E  + S    
Sbjct: 178 QKLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFE--IYSHLSK 235

Query: 195 LNALDVDAPRLLSF--IFDLNPI-PIISTNA 222
             ++++ +P L SF   F +  + PI+S +A
Sbjct: 236 PESVEIKSPSLESFHCSFTVRSVKPIVSVDA 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 121/241 (50%), Gaps = 31/241 (12%)

Query: 1   MDETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQ--NSFPIL---------- 48
           M E  D+IS LP  I+  I++ L  KE+ RTS+LS +W +    +S  +L          
Sbjct: 1   MVEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFFHS 60

Query: 49  ---DFDLMNFIVRIEIKLRIYVCPL------------DVEGSSPLFDKWIELATENGLEV 93
              +FD+ +FI  I+  LR+    +            D+E  S L D WI+ A E  ++ 
Sbjct: 61  RRKNFDVSSFINAIDSSLRLRQKDVSLARLQLRLHLNDIESES-LIDSWIDAALERKVKE 119

Query: 94  LDFMVIADE-NTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDR 151
           LD  ++       Y LP  IFS   +T L L  C+LE+        L+KL L +   +++
Sbjct: 120 LDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEICGDVDLPALRKLCLRKILCDEQ 179

Query: 152 ELHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLLISSCYGLNALDVDAPRLLSFIF 210
            +  LIS CPL+EDL I  C  L ++ +S    L  L+++ CY L  +++DAP L  F++
Sbjct: 180 AIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYNLRRIEIDAPSLQYFMY 239

Query: 211 D 211
           D
Sbjct: 240 D 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera]

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 121/241 (50%), Gaps = 31/241 (12%)

Query: 1   MDETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQ--NSFPIL---------- 48
           M E  D+IS LP  I+  I++ L  KE+ RTS+LS +W +    +S  +L          
Sbjct: 33  MVEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFFHS 92

Query: 49  ---DFDLMNFIVRIEIKLRIYVCPL------------DVEGSSPLFDKWIELATENGLEV 93
              +FD+ +FI  I+  LR+    +            D+E  S L D WI+ A E  ++ 
Sbjct: 93  RRKNFDVSSFINAIDSSLRLRQKDVSLARLQLRLHLNDIESES-LIDSWIDAALERKVKE 151

Query: 94  LDFMVIADE-NTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDR 151
           LD  ++       Y LP  IFS   +T L L  C+LE+        L+KL L +   +++
Sbjct: 152 LDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEICGDVDLPALRKLCLRKILCDEQ 211

Query: 152 ELHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLLISSCYGLNALDVDAPRLLSFIF 210
            +  LIS CPL+EDL I  C  L ++ +S    L  L+++ CY L  +++DAP L  F++
Sbjct: 212 AIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYNLRRIEIDAPSLQYFMY 271

Query: 211 D 211
           D
Sbjct: 272 D 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera]

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 115/247 (46%), Gaps = 33/247 (13%)

Query: 1   MDETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNS-------FPILDF--- 50
           M E  D+IS LP  I+  I+  L  K+V R+S+LS +W +           F   DF   
Sbjct: 1   MAEEQDRISHLPDDILIRILGLLPTKDVARSSLLSQAWRKLSPFSSLSLLMFQCPDFLES 60

Query: 51  -----DLMNFIVRIEIKLRIYVCPLDVE-------------GSSPLFDKWIELATENGLE 92
                D+ +FI  I+  LR+   P DV               S  L D WI+ A E  ++
Sbjct: 61  CRKNTDVSSFINAIDSSLRLR--PKDVNLARLRLHLDLDDIESESLIDSWIDAALERKVK 118

Query: 93  VLD-FMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLND 150
            LD ++        Y LP  IFS   +T L L  C+LE+        L+KL L +   ++
Sbjct: 119 ELDLYLRPRSIAKPYGLPAKIFSTTTITVLSLEQCRLEICGDIDLPALRKLCLRQIRCDE 178

Query: 151 RELHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLLISSCYGLNALDVDAPRLLSFI 209
           + +  LIS CPL+EDL I+ C  L ++ +S    L  L +  CY L  +++DAP L   +
Sbjct: 179 QAIRQLISSCPLIEDLDIASCGGLQKLHVSGLANLHRLEVICCYNLRRIEIDAPSLQHLV 238

Query: 210 FDLNPIP 216
           +    +P
Sbjct: 239 YHCGRLP 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476919|ref|XP_004154876.1| PREDICTED: uncharacterized protein LOC101224445 [Cucumis sativus]

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 116/239 (48%), Gaps = 35/239 (14%)

Query: 3   ETVDQISDLPPSIIHHIMTYL-SAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEI 61
           E VD IS LP S IHHI+++L SAKE  RTSILS  W     SF +L F+  +++ + E+
Sbjct: 51  EPVDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSYL-KAEV 109

Query: 62  KL------RIYVCPLDVEGSSPL--------------------FDKWIELATENGLEVLD 95
            L      + ++  +D    S L                      +W+++A ENGL  LD
Sbjct: 110 GLNSDKQRQKFIDSIDNSLQSHLTQNLGIYKLVLRITPELVSHLKRWVDMAGENGLGELD 169

Query: 96  FMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTC---AHLKKLLLSEFPLNDRE 152
             V         +P  + S K L+ L+L G  L   SF      +L+KL L    ++ + 
Sbjct: 170 IHV-ETTRKRCKVPLCMHSIKTLSGLRLQG--LYWSSFEALEFNNLQKLYLRRLHVDPQL 226

Query: 153 LHHLISKCPLLEDLSISHCHSLGRIMIS-SNKLEHLLISSCYGLNALDVDAPRLLSFIF 210
           +  L+S CPLL DL I  C  L  + IS S KLE + +  C+ L  +++  P L +F +
Sbjct: 227 IQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVDLYQCHFLRRIELQVPSLKTFWY 285

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458245|ref|XP_004146858.1| PREDICTED: uncharacterized protein LOC101214024 [Cucumis sativus]

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 116/239 (48%), Gaps = 35/239 (14%)

Query: 3   ETVDQISDLPPSIIHHIMTYL-SAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEI 61
           E VD IS LP S IHHI+++L SAKE  RTSILS  W     SF +L F+  +++ + E+
Sbjct: 51  EPVDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSYL-KAEV 109

Query: 62  KL------RIYVCPLDVEGSSPL--------------------FDKWIELATENGLEVLD 95
            L      + ++  +D    S L                      +W+++A ENGL  LD
Sbjct: 110 GLNSDKQRQKFIDSIDNSLQSHLTQNLGIYKLVLRITPELVSHLKRWVDMAGENGLGELD 169

Query: 96  FMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTC---AHLKKLLLSEFPLNDRE 152
             V         +P  + S K L+ L+L G  L   SF      +L+KL L    ++ + 
Sbjct: 170 IHV-ETTRKRCKVPLCMHSIKTLSGLRLQG--LYWSSFEALEFNNLQKLYLRRLHVDPQL 226

Query: 153 LHHLISKCPLLEDLSISHCHSLGRIMIS-SNKLEHLLISSCYGLNALDVDAPRLLSFIF 210
           +  L+S CPLL DL I  C  L  + IS S KLE + +  C+ L  +++  P L +F +
Sbjct: 227 IQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVDLYQCHFLRRVELQVPSLKTFWY 285

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454739|ref|XP_003597650.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|355486698|gb|AES67901.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 32/239 (13%)

Query: 3   ETVDQISDLPPSIIHHIMTYL-SAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEI 61
           E+VD+IS+LP  +IHHI+++L + K+  RT  LS  W     SF  L F    F+  I  
Sbjct: 69  ESVDRISELPNHVIHHILSFLRNVKDAIRTRSLSKRWRTMWFSFAALMFYEQKFVAGIGP 128

Query: 62  -----------------------------KLRIYVCPLDVEGSSPLFDKWIELATENGLE 92
                                        K  +++   D+   +PL D W+  A    ++
Sbjct: 129 EDGSNKENLFRQHVADSLHTYLANNAQIHKFLLHMTSFDLT-DAPLVDSWLTSAVSQDIK 187

Query: 93  VLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLE-LPSFTCAHLKKLLLSEFPLNDR 151
            +D  V   ++  Y LP+ + S++ LT L+L GC L+   +     L+KL L +  L++ 
Sbjct: 188 EIDLQVGFKDSKLYTLPEVVLSSETLTGLRLSGCILQSFSNIMLPRLQKLYLRKIHLSEL 247

Query: 152 ELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIF 210
            L  LIS+CP +EDL +  C  L  + I    L  + I +C  L  +D+ AP L +F F
Sbjct: 248 ILLSLISRCPSIEDLRLIQCSGLKFLCILHPSLSRVDIHNCNQLKKVDIIAPNLDTFWF 306

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.764	0.478	0.279	1.1e-14
TAIR|locus:2088882	465	AT3G28410 "AT3G28410" [Arabido	0.775	0.475	0.272	6.8e-13
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.442	0.302	0.293	1.4e-12
TAIR|locus:2037578	458	AT1G78750 "AT1G78750" [Arabido	0.694	0.432	0.268	8.5e-11
TAIR|locus:2157922	444	AT5G53840 "AT5G53840" [Arabido	0.561	0.360	0.292	1.9e-10
TAIR|locus:2081408	427	AT3G44060 "AT3G44060" [Arabido	0.652	0.435	0.269	2.4e-10
TAIR|locus:2099019	457	AT3G58860 "AT3G58860" [Arabido	0.522	0.326	0.283	3.2e-10
TAIR|locus:505006162	422	AT1G32375 "AT1G32375" [Arabido	0.680	0.459	0.246	5.4e-10
TAIR|locus:2201527	442	AT1G66310 "AT1G66310" [Arabido	0.189	0.122	0.407	2e-09
TAIR|locus:2175861	388	AT5G60610 "AT5G60610" [Arabido	0.575	0.422	0.312	2.1e-09

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 69/247 (27%), Positives = 114/247 (46%)

Query:     6 DQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEIKLRI 65
             D I+ +P  I+HHI++++      RTS+LS  W       P LD  L +  +     L  
Sbjct:    27 DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDITLKHGAMNQT--LTS 84

Query:    66 YVCPL--------DVEGSS-PLFDKWIELATENGLEVLDFMVIADENTY---YALPQTIF 113
             Y  P+        D+  ++ P  D WIE A    ++ L   V   + TY   Y  P   +
Sbjct:    85 YTAPIITSFKLVMDLNSNTVPQVDSWIEFALSRNVQNLS--VFVRDFTYSKTYRFPDIFY 142

Query:   114 SAKLLTSLKLVGCKLE----LPSFTCA--HLKKLLLSEFPLNDRELHHLISKCPLLEDLS 167
                L +SLKL+   L+    +P+ T +   L+ L L    + D  +H+++S CP+LE L+
Sbjct:   143 ---LSSSLKLLDVTLDFFDMIPTCTVSWKSLRNLTLRFCQIPDESIHNILSGCPILESLT 199

Query:   168 ISHCHSLGRIMIS-SNKLEHLLISSCYGLNA-LDVDAPRL--LSFIFDLNPIPIISTNAL 223
             +  C  L R+ +S S  L  L I+  Y     + + AP +  L   +   P  I+  ++L
Sbjct:   200 LDTCRLLERLDLSKSPNLRRLDINQQYRRTGPVAIVAPHIYYLRLTYSSTPSTIVDVSSL 259

Query:   224 CPWNVTL 230
                N+T+
Sbjct:   260 SEANLTI 266

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088882 AT3G28410 "AT3G28410" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 6.8e-13, P = 6.8e-13
 Identities = 68/250 (27%), Positives = 110/250 (44%)

Query:     6 DQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNFIVRIEIKLRI 65
             D I+ +P  I+HHI++++      RTS+LS  W       P LD  L +        L  
Sbjct:    28 DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIKLKHG--ETNQTLTS 85

Query:    66 YVCPL--------DVEGSS-PLFDKWIELATENGLEVLDFMVIADENTY---YALPQTIF 113
             Y  P+        D+  ++ P  D WIE A    ++ L   V   + TY   Y  P   +
Sbjct:    86 YTAPIITSFKLVMDLNDNTVPQVDSWIEFALSRNVQNLS--VFVRDFTYTKTYRFPDIFY 143

Query:   114 SAKLLTSLKLVGCKLELPSF--TCA----HLKKLLLSEFPLNDRELHHLISKCPLLEDLS 167
                + +SLK +   L+      TCA     L+ L L    + D  +H+++S CP+LE L+
Sbjct:   144 ---ISSSLKQLDVTLDFFDMIPTCAVSWKSLRNLTLRFCQIPDESMHNILSGCPILESLT 200

Query:   168 ISHCHSLGRIMIS-SNKLEHLLISSCYGLNA-LDVDAPRL--LSFIFDLNPIPIISTNAL 223
             +  C  L R+ +S S  L  L I+  Y     + + AP +  L   +   P  I+  ++L
Sbjct:   201 LDTCRLLERLDLSKSPNLRRLDINRQYRRTGPIAIVAPHIYYLRLTYSSTPSTIVDVSSL 260

Query:   224 CPWNVTLDCD 233
                N+ +  D
Sbjct:   261 SEANLNIISD 270

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 39/133 (29%), Positives = 70/133 (52%)

Query:    77 PLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFT-- 134
             P  D+W+   + NG++ L   +   E   + +P  +F+   LT L+L  C+ + P +   
Sbjct:    97 PDIDQWLLFLSRNGIKELVLKLGEGE---FRVPACLFNCLKLTCLELCHCEFDPPQYFKG 153

Query:   135 CAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYG 194
              ++LK L L +  +    +  LIS CPLLE LS+S+  SL  + IS+  L +L +   + 
Sbjct:   154 FSYLKSLNLHQILVAPEVIESLISGCPLLEFLSLSYFDSLV-LSISAPNLMYLYLDGEFK 212

Query:   195 LNALDVDAPRLLS 207
                L+ + P+L++
Sbjct:   213 DIFLE-NTPKLVA 224

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
 Identities = 57/212 (26%), Positives = 91/212 (42%)

Query:    78 LFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSF-TCA 136
             L  +WI       ++ L  +  + +N  + +P T+++ + L  L L G  L  P F +  
Sbjct:   115 LIRRWINSVVSRKVKYLGVLDDSCDNYEFEMPPTLYTCETLVYLTLDGLSLASPKFVSLP 174

Query:   137 HLKKLLLSEFPLNDR-ELHHLISKCPLLEDLSI--SHCHSLGRIMISSNKLEHL--LISS 191
              LK+L LS     D   L  LIS+CP+LE+L+I  S C       + S  L     +  +
Sbjct:   175 SLKELHLSIVKFADHMALETLISQCPVLENLNINRSFCDDFEFTCVRSQSLLSFTHVADT 234

Query:   192 CYGLN---ALDVDAPRLLSFIFDLNPIPIISTNALCPWNVTLDCDS--NLDCDWFLSLKE 246
                LN    + +DAP+L       + I     N L    V  D D+  NL C    +  +
Sbjct:   235 DEMLNEDLVVAIDAPKLKYLRLSDHRIASFILNDLASL-VEADIDTVFNLICKKMFNPND 293

Query:   247 FLGASSQIERLCIDFSSVETNS-EDATLHFLY 277
              L   + I    +  SS++T     +TL  +Y
Sbjct:   294 -LNKRNMIRDFLVGISSIKTLIIASSTLEVIY 324

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157922 AT5G53840 "AT5G53840" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
 Identities = 53/181 (29%), Positives = 86/181 (47%)

Query:     6 DQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFD---LMNFIVRIEIK 62
             +++S LP  +I  I+++LS K+  RTSILST W       P+LDFD   L +F   +   
Sbjct:    18 ERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFDSRELRSFSEFVSFA 77

Query:    63 ------------LRIYVCPLDVEGSSPLFDKWIELATENGLEVLDFMVIADENTYYALPQ 110
                          ++ VC  D+ G+  L   WI+L T + ++ +D  V      +  +P 
Sbjct:    78 GSFFYLHKDSYIQKLRVCIYDLAGNYYL-TSWIDLVTRHRIQHIDISVFTCSG-FGVIPL 135

Query:   111 TIFSAKLLTSLKL---VGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLS 167
             ++++   L  LKL       +E  S  C  +  L    F  N+  L  +IS  P+LE+L+
Sbjct:   136 SLYTCDTLVHLKLSRVTMVNVEFVSLPCLKILDLDFVNFT-NETTLDKIISCSPVLEELT 194

Query:   168 I 168
             I
Sbjct:   195 I 195

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2081408 AT3G44060 "AT3G44060" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
 Identities = 56/208 (26%), Positives = 100/208 (48%)

Query:    78 LFDKWIELATENGLEVLDFMVIADENTY-YALPQTIFSAKLLTSLKLVGCKLELPSF--- 133
             + D+WI  A E+G+  L   ++ +   + +++P  +F++  L  L L G +L  PSF   
Sbjct:    90 VLDRWICNALEHGVSELHLHLMHESWPWLFSIPSKVFNSSTLVKLSL-GSRLYCPSFPPD 148

Query:   134 -TCAHLKKLLLSEFPLNDRELHHL-ISKCPLLEDLSISHCHSLGRIMISSNKLEHLLIS- 190
              +   LK LLL      D +L ++ ++ CP LEDL+I H +     +ISS  ++ L +S 
Sbjct:   149 TSLPALKVLLLDSILFRDDQLSNVFLAACPALEDLTIHHTYH--PCVISSKSIKKLSLSV 206

Query:   191 --SCYGLN-ALDVDAPRLLSFIFDLNP---IPIISTNALCPWNVTLDC----DSNLDCDW 240
                 YG    L +D P ++   +  +P    P+   ++L    VTLD     ++N +   
Sbjct:   207 NSGYYGAGYILTLDTPSVVDLYYSDSPRHNAPLFHLDSLA--KVTLDLHFIENNNREVQN 264

Query:   241 FLSLKEFLGASSQIERLCIDFSSVETNS 268
                +K  +     ++ L +  S+VE  S
Sbjct:   265 DADVKNLIREICNVKTLHLTCSTVEVIS 292

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099019 AT3G58860 "AT3G58860" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
 Identities = 45/159 (28%), Positives = 71/159 (44%)

Query:    80 DKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKL-VGCKLEL--PSFTCA 136
             D+WI    + G+  L   +  +E   Y+LP  I  +K L  LK   G  L L        
Sbjct:   106 DRWICNVLQRGVSHLALFMDFEEE--YSLPYEISVSKTLVELKTGYGVDLYLWDDDMFLP 163

Query:   137 HLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGR-IMISSNKLEHLLISSCYG- 194
              LK L+L        +   L+  CP+LE+L + +     R +++SS+ L++L I+S  G 
Sbjct:   164 MLKTLVLESVEFGRGQFQTLLPACPVLEELMLLNMEWKDRNVILSSSSLKNLKITSEDGC 223

Query:   195 LNALDVDAPRLLSF-IFDL--NPIPIISTNALCPWNVTL 230
             L  L  D P L+    +D      PI++   L    + L
Sbjct:   224 LGTLSFDTPNLVFLDYYDYVAEDYPIVNLKNLVEVGINL 262

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006162 AT1G32375 "AT1G32375" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
 Identities = 54/219 (24%), Positives = 106/219 (48%)

Query:    82 WIELATENGLE--VLDFMVIADENTYYALPQTIFSA-KLLTSLKLVGCKL--ELPSFTCA 136
             WI+ A ++ L   +++      +N+   LP+++++  ++L +LKL    L     SF+  
Sbjct:    94 WIKTAEKSCLRELIIEIDKSNSDNSSVVLPRSLYTCCRMLVTLKLNNAVLVDATSSFSFP 153

Query:   137 HLKKL-LLS-EFPLNDRELHHLISKCPLLEDLSISHC--HSLGRIMISSNKLEHLLISSC 192
              LK L L+S +FP  D  +  L+S CP+LEDL +  C   ++    +  + L+ L++   
Sbjct:   154 SLKTLSLVSMKFP-GDELIKMLLSNCPVLEDLVVKRCPYDNVTTFTVRVSSLKCLVLHET 212

Query:   193 YGLNALDVDAPRLLSFIFDLNPIPIISTN----ALCPW--NVTLDCDSNLDCDWFLSLKE 246
               L +++ D      F+ D   +  +         C    N+T    +N+ C+ ++  ++
Sbjct:   213 E-LASINADC----GFVIDTPSLECLDIEDGRGGFCVIENNMTKVVKANV-CNSYVHTQQ 266

Query:   247 FLGASSQIERL--CIDFSSVETNSEDATLHFLYKLRLWT 283
              +G+ S ++RL  CI  SS +     +  H L +L + T
Sbjct:   267 LMGSISSVKRLYVCIP-SSKDAYPVGSVFHCLVRLTICT 304

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2201527 AT1G66310 "AT1G66310" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query:     2 DETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDLMNF 55
             D+ VD + DLP S++ HI+  L  K+V +TS+LS+ W       P LD D  +F
Sbjct:    15 DDEVDWLRDLPESLLCHILLNLPTKDVVKTSVLSSKWRNLWRLVPGLDLDSSDF 68

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175861 AT5G60610 "AT5G60610" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 56/179 (31%), Positives = 90/179 (50%)

Query:     5 VDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFD-----LMNFIVR- 58
             +D+IS LP  ++  I++++  K    TSILS  W       P L+ D     L +FI++ 
Sbjct:     1 MDRISGLPDELLVKIISFVPTKVAVSTSILSKRWESLWKWVPKLECDCTEPALRDFILKN 60

Query:    59 IEIKLRIYVCP-LDVEGSSPLFDK---WIELATENGLEVLDFMVIAD-ENTYYALPQTIF 113
             + ++ RI     L     S LF     W  +A  + L  L     +   N Y  LP++++
Sbjct:    61 LPLQARIIESLYLRFRRESFLFQDIKLWGGIAISHCLRELRIDFFSHYANPYVILPRSLY 120

Query:   114 SAKLLTSLKLVGC--KLELPSFTCA-HLKKLLLSEFPLNDRE-LHHLISKCPLLEDLSI 168
             + K L +LKL+G   ++++P   C   LK LLL     ++ + L  L+S CP+LEDL I
Sbjct:   121 TCKSLVTLKLLGLGIRVDVPRDVCLPSLKTLLLQCVAYSEEDPLRLLLSCCPVLEDLVI 179

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034157001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (520 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
pfam00646	48	pfam00646, F-box, F-box domain	0.002

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 6  DQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFDL 52
            + DLP  ++  I++ L  K++ R S++S  W    +S  +    L
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRL 47

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.78
KOG4341	483	consensus F-box protein containing LRR [General fu	99.29
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.53
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.49
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.37
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.34
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.17
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.13
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.12
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.07
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.03
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.97
KOG4341	483	consensus F-box protein containing LRR [General fu	97.94
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.79
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.76
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.69
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.57
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.35
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.34
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.32
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.25
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.09
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.74
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.59
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.57
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.54
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.39
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.05
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.87
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	95.69
PRK15386	426	type III secretion protein GogB; Provisional	95.68
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.49
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.35
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	95.3
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.21
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.99
PRK15386	426	type III secretion protein GogB; Provisional	94.66
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	94.44
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.38
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.37
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.97
KOG2997	366	consensus F-box protein FBX9 [General function pre	93.76
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	93.25
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.21
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	92.91
KOG0617	264	consensus Ras suppressor protein (contains leucine	92.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	91.85
PLN03150	623	hypothetical protein; Provisional	91.82
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	91.17
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	90.28
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	90.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	89.45
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	88.23
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	88.09
PLN03150	623	hypothetical protein; Provisional	86.87
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	81.73
PF13013	109	F-box-like_2: F-box-like domain	81.59

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=8e-21  Score=156.33  Aligned_cols=200  Identities=21%  Similarity=0.255  Sum_probs=144.2

Q ss_pred             CCCCCHHHHHHHhcCCChhhHHhhhhcccchhhc------ccccceeeEecccccccccccccccccccccC-----CCh
Q 041569            8 ISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQF------QNSFPILDFDLMNFIVRIEIKLRIYVCPLDVE-----GSS   76 (285)
Q Consensus         8 ~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~l------w~~~~~l~~~~~~~~~~v~~~~~l~~~~~~~~-----~~~   76 (285)
                      |..|||||+..||+.|+-+++.+++.|||||+++      |..   ++.......+.+- .+.+++-...++     .+.
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p~~l-~~l~~rgV~v~Rlar~~~~~  173 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHPDVL-GRLLSRGVIVFRLARSFMDQ  173 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccChhHH-HHHHhCCeEEEEcchhhhcC
Confidence            8899999999999999999999999999999987      654   3444433333221 111111111111     011


Q ss_pred             hHHHHHHHHHHHCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeee-ecChH
Q 041569           77 PLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEF-PLNDR  151 (285)
Q Consensus        77 ~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~-~~~~~  151 (285)
                      ..+.... ..+..+++.++++.  .......+...+..|..|+.|.|.|..+.+    -.+.-.+|+.|+|+.| .++..
T Consensus       174 prlae~~-~~frsRlq~lDLS~--s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n  250 (419)
T KOG2120|consen  174 PRLAEHF-SPFRSRLQHLDLSN--SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN  250 (419)
T ss_pred             chhhhhh-hhhhhhhHHhhcch--hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh
Confidence            1111111 11345799999988  556667777788889999999999999877    2234688999999999 68999


Q ss_pred             HHHHHHhCCCccceeeeecCCCcCeE---EEc--cCCcceEEEeecC------CCceEEEeCCCccEEEEeeCc
Q 041569          152 ELHHLISKCPLLEDLSISHCHSLGRI---MIS--SNKLEHLLISSCY------GLNALDVDAPRLLSFIFDLNP  214 (285)
Q Consensus       152 ~l~~l~~~cp~Le~L~l~~c~~~~~~---~i~--~~~L~~L~l~~~~------~~~~~~~~~p~L~~l~~~~~~  214 (285)
                      ++..+++.|..|..|++++|...+..   .|.  +++|+.|++++|.      ++..+...+|+|..|+++++.
T Consensus       251 ~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  251 ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence            99999999999999999999765533   122  2899999999998      334445578999999998875

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.29  E-value=2.4e-13  Score=117.02  Aligned_cols=162  Identities=22%  Similarity=0.364  Sum_probs=112.7

Q ss_pred             CCCHHHHHHHhcCCChhhHHhhhhcccchhhc------ccccceeeEecccccccccccccccccccccCCChhHHHHHH
Q 041569           10 DLPPSIIHHIMTYLSAKEVTRTSILSTSWNQF------QNSFPILDFDLMNFIVRIEIKLRIYVCPLDVEGSSPLFDKWI   83 (285)
Q Consensus        10 ~LP~~il~~I~s~L~~~~~~~~~~vskrWr~l------w~~~~~l~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~l   83 (285)
                      .||+|++.+|||+|+++.+.+++++|+.|...      |..+...+|..     .++ ..              -+...+
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~r-----Dv~-g~--------------VV~~~~  133 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQR-----DVD-GG--------------VVENMI  133 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchh-----cCC-Cc--------------ceehHh
Confidence            39999999999999999999999999999876      66544433322     122 11              111111


Q ss_pred             HHHHHCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC------CCccccccceEEeeee-ecChHHHHHH
Q 041569           84 ELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL------PSFTCAHLKKLLLSEF-PLNDRELHHL  156 (285)
Q Consensus        84 ~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~------~~~~~~~L~~L~L~~~-~~~~~~l~~l  156 (285)
                      .. .+..++++.+..+ .......+-.....|++++.|.+.+|...+      .+..|+.|+.+.|..| .+|+..++.+
T Consensus       134 ~R-cgg~lk~LSlrG~-r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l  211 (483)
T KOG4341|consen  134 SR-CGGFLKELSLRGC-RAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL  211 (483)
T ss_pred             hh-hcccccccccccc-ccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence            21 2245788887774 122333444455568999999999996433      4456899999999997 5699999999


Q ss_pred             HhCCCccceeeeecCCCcCeEEEcc-----CCcceEEEeecC
Q 041569          157 ISKCPLLEDLSISHCHSLGRIMISS-----NKLEHLLISSCY  193 (285)
Q Consensus       157 ~~~cp~Le~L~l~~c~~~~~~~i~~-----~~L~~L~l~~~~  193 (285)
                      ...||+|++|++++|+.+..-.|.+     ..++.+...+|.
T Consensus       212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~  253 (483)
T KOG4341|consen  212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL  253 (483)
T ss_pred             HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc
Confidence            9999999999999998666533332     446666666665

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.92  E-value=7.5e-10  Score=67.87  Aligned_cols=35  Identities=31%  Similarity=0.718  Sum_probs=31.1

Q ss_pred             CCCCCHHHHHHHhcCCChhhHHhhhhcccchhhcc
Q 041569            8 ISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQ   42 (285)
Q Consensus         8 ~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~lw   42 (285)
                      |..||+||+.+||++|+.+|+.+++.|||+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999874

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=8.7e-09  Score=89.79  Aligned_cols=101  Identities=21%  Similarity=0.221  Sum_probs=72.8

Q ss_pred             cCCccEEEEcCeeecC-----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc---CCcce
Q 041569          115 AKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS---NKLEH  186 (285)
Q Consensus       115 ~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~---~~L~~  186 (285)
                      .|+|+.|+|+.+.+..     ....+++||+|+|.+|.++..++..++..||.|+.|.+.+.........+.   ..|+.
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            3667777777666543     123478999999999999999999999999999999999876333322222   68999


Q ss_pred             EEEeecC--CCc--eEEEeCCCccEEEEeeCcE
Q 041569          187 LLISSCY--GLN--ALDVDAPRLLSFIFDLNPI  215 (285)
Q Consensus       187 L~l~~~~--~~~--~~~~~~p~L~~l~~~~~~~  215 (285)
                      |++++..  +..  ...-+.|+|+.|.+..+.+
T Consensus       251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi  283 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI  283 (505)
T ss_pred             ccccCCcccccccccccccccchhhhhccccCc
Confidence            9998876  222  2334678888887776653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=1.1e-08  Score=85.18  Aligned_cols=129  Identities=27%  Similarity=0.347  Sum_probs=96.6

Q ss_pred             HHHHCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-----CCc-cccccceEEeeee--ecChHHHHHH
Q 041569           85 LATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-----PSF-TCAHLKKLLLSEF--PLNDRELHHL  156 (285)
Q Consensus        85 ~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----~~~-~~~~L~~L~L~~~--~~~~~~l~~l  156 (285)
                      .|...+++.+.++.+.+ .......-.+.+|+.|.+|+|+.|.+..     ... --++|+.|+|+|+  .+.+.++..+
T Consensus       230 iAkN~~L~~lnlsm~sG-~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL  308 (419)
T KOG2120|consen  230 IAKNSNLVRLNLSMCSG-FTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL  308 (419)
T ss_pred             Hhccccceeeccccccc-cchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH
Confidence            33456899999988522 2334444455679999999999996543     112 2689999999999  4577899999


Q ss_pred             HhCCCccceeeeecCCCcCeEEEcc----CCcceEEEeecCCC---ceEEE-eCCCccEEEEeeCc
Q 041569          157 ISKCPLLEDLSISHCHSLGRIMISS----NKLEHLLISSCYGL---NALDV-DAPRLLSFIFDLNP  214 (285)
Q Consensus       157 ~~~cp~Le~L~l~~c~~~~~~~i~~----~~L~~L~l~~~~~~---~~~~~-~~p~L~~l~~~~~~  214 (285)
                      ...||+|.+|++++|..++.-.+..    +.|++|.++.|+.+   ..+++ ..|.|.+|++.|+.
T Consensus       309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            9999999999999998777633322    88999999999943   33555 67888888887763

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.49  E-value=3.3e-08  Score=60.77  Aligned_cols=37  Identities=38%  Similarity=0.796  Sum_probs=31.2

Q ss_pred             CCCCCHHHHHHHhcCCChhhHHhhhhcccchhhcccc
Q 041569            8 ISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNS   44 (285)
Q Consensus         8 ~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~lw~~   44 (285)
                      |++||+|++.+||++|+.+|+++++.|||+|+++..+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5679999999999999999999999999999998654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.37  E-value=2.4e-07  Score=54.70  Aligned_cols=33  Identities=27%  Similarity=0.583  Sum_probs=31.2

Q ss_pred             CCHHHHHHHhcCCChhhHHhhhhcccchhhccc
Q 041569           11 LPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQN   43 (285)
Q Consensus        11 LP~~il~~I~s~L~~~~~~~~~~vskrWr~lw~   43 (285)
                      ||+|++.+||++++.+|+.+++.|||+|+.+..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~   33 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID   33 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.34  E-value=8.2e-07  Score=88.85  Aligned_cols=122  Identities=19%  Similarity=0.191  Sum_probs=67.9

Q ss_pred             CCCceEEEEeeeCCCccccCCcccc-CcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIF-SAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED  165 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  165 (285)
                      ++++.|+++..  .. ...+|..++ .+.+|++|+|++|.+..  +...+++|++|+|.++.++... ...+..+++|++
T Consensus        93 ~~L~~L~Ls~n--~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~  168 (968)
T PLN00113         93 PYIQTINLSNN--QL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEI-PNDIGSFSSLKV  168 (968)
T ss_pred             CCCCEEECCCC--cc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccC-ChHHhcCCCCCE
Confidence            56777776652  11 124566555 57788888888876654  3345777888888777664221 122456777777


Q ss_pred             eeeecCCCcCeE--EEcc-CCcceEEEeecCCCceEE---EeCCCccEEEEeeCc
Q 041569          166 LSISHCHSLGRI--MISS-NKLEHLLISSCYGLNALD---VDAPRLLSFIFDLNP  214 (285)
Q Consensus       166 L~l~~c~~~~~~--~i~~-~~L~~L~l~~~~~~~~~~---~~~p~L~~l~~~~~~  214 (285)
                      |++++|.-...+  .+.. ++|+.|++.+|.-...+.   -..++|+.|++.++.
T Consensus       169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence            777776422111  1112 566677666664111111   134556666655544

>PLN03210 Resistant to P

Probab=98.17  E-value=3.1e-06  Score=85.90  Aligned_cols=56  Identities=23%  Similarity=0.283  Sum_probs=25.9

Q ss_pred             CCCccceeeeecCCCcCeEEEc--cCCcceEEEeecCCCceEEEeCCCccEEEEeeCc
Q 041569          159 KCPLLEDLSISHCHSLGRIMIS--SNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNP  214 (285)
Q Consensus       159 ~cp~Le~L~l~~c~~~~~~~i~--~~~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~~  214 (285)
                      .+++|+.|++++|..++.+...  .++|+.|.+.+|..+..+....++|+.|.+.+..
T Consensus       679 ~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~  736 (1153)
T PLN03210        679 YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETA  736 (1153)
T ss_pred             ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCc
Confidence            3455555555555444433221  1455555555554333333233455555554443

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.13  E-value=2.7e-06  Score=85.19  Aligned_cols=62  Identities=21%  Similarity=0.082  Sum_probs=25.7

Q ss_pred             CccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569          109 PQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC  171 (285)
Q Consensus       109 ~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  171 (285)
                      |..+..+++|+.|+|++|.+..    ....+++|++|+|.++.++... -.-+..+++|+.|++.+|
T Consensus       157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n  222 (968)
T PLN00113        157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYN  222 (968)
T ss_pred             ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCC
Confidence            3333344555555555554322    1123445555555544432111 011233445555555444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.12  E-value=1.7e-06  Score=75.16  Aligned_cols=171  Identities=18%  Similarity=0.084  Sum_probs=106.7

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCc---CCccEEEEcCeeecC--------CCccc-cccceEEeeeeecChH---HH
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSA---KLLTSLKLVGCKLEL--------PSFTC-AHLKKLLLSEFPLNDR---EL  153 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~---~~L~~L~L~~~~~~~--------~~~~~-~~L~~L~L~~~~~~~~---~l  153 (285)
                      ++++++++...  .... ..+..+...   ++|++|++++|.+..        ....+ ++|+.|++.++.++..   .+
T Consensus        81 ~~L~~L~l~~~--~~~~-~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          81 CGLQELDLSDN--ALGP-DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             CceeEEEccCC--CCCh-hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            57777777652  2211 111111122   559999999887763        11235 8889999999988643   34


Q ss_pred             HHHHhCCCccceeeeecCCCcCeEE---Ec-----cCCcceEEEeecCC-------CceEEEeCCCccEEEEeeCcEee-
Q 041569          154 HHLISKCPLLEDLSISHCHSLGRIM---IS-----SNKLEHLLISSCYG-------LNALDVDAPRLLSFIFDLNPIPI-  217 (285)
Q Consensus       154 ~~l~~~cp~Le~L~l~~c~~~~~~~---i~-----~~~L~~L~l~~~~~-------~~~~~~~~p~L~~l~~~~~~~~~-  217 (285)
                      ...+..+++|++|++++|. ++...   +.     .++|++|++++|.-       +....-..|+|++|+++++.+.- 
T Consensus       158 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~  236 (319)
T cd00116         158 AKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA  236 (319)
T ss_pred             HHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence            4456677889999998875 22111   11     15899999998851       11112246889999998876321 


Q ss_pred             -----e-----cCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569          218 -----I-----STNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET  266 (285)
Q Consensus       218 -----~-----~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~  266 (285)
                           .     ..+.|+++++....+..   .....+...+..+++|+.++++.+....
T Consensus       237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~---~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         237 GAAALASALLSPNISLLTLSLSCNDITD---DGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHHHHHHHHhccCCCceEEEccCCCCCc---HHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence                 0     12578888887644432   2334555677777899999998888875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.08  E-value=2.6e-07  Score=83.68  Aligned_cols=145  Identities=17%  Similarity=0.151  Sum_probs=84.2

Q ss_pred             cCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc----CCc
Q 041569          113 FSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS----NKL  184 (285)
Q Consensus       113 ~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~----~~L  184 (285)
                      +.+.+++.|+|..+.+..    ..+++..|+.|+|+.+.+..-+... =+.|++|++|++++.. ++.+.-.+    ..|
T Consensus       266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WSFTQKLKELDLSSNR-ITRLDEGSFRVLSQL  343 (873)
T ss_pred             eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch-hhhcccceeEeccccc-cccCChhHHHHHHHh
Confidence            446667777777666544    3356677777777766442222222 2347778888877653 33333222    567


Q ss_pred             ceEEEeecC--CCceEEE-eCCCccEEEEeeCcEe---------eecCCCcccceeccccCCCCChhhHHHHHHHhccCC
Q 041569          185 EHLLISSCY--GLNALDV-DAPRLLSFIFDLNPIP---------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASS  252 (285)
Q Consensus       185 ~~L~l~~~~--~~~~~~~-~~p~L~~l~~~~~~~~---------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~  252 (285)
                      +.|+++...  ++.+..+ ...+|+.|++..+.+.         +...++|+.+.+..+.+..++.       +.+.+++
T Consensus       344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k-------rAfsgl~  416 (873)
T KOG4194|consen  344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK-------RAFSGLE  416 (873)
T ss_pred             hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch-------hhhccCc
Confidence            777777664  3333333 4566777777666521         2233466666666554444443       5667788


Q ss_pred             CceEEEEEeCCCcc
Q 041569          253 QIERLCIDFSSVET  266 (285)
Q Consensus       253 ~L~~L~L~~~~~~~  266 (285)
                      +||+|+|.-+.+..
T Consensus       417 ~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  417 ALEHLDLGDNAIAS  430 (873)
T ss_pred             ccceecCCCCccee
Confidence            88888887766654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=5.3e-07  Score=78.88  Aligned_cols=163  Identities=18%  Similarity=0.144  Sum_probs=89.6

Q ss_pred             cCCccEEEEcCeeecC-----CCccccccceEEeeeeec-ChHHHHHHHhCCCccceeeeecCCCc---Ce-EEEccCCc
Q 041569          115 AKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSISHCHSL---GR-IMISSNKL  184 (285)
Q Consensus       115 ~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~---~~-~~i~~~~L  184 (285)
                      ...|+...|.++....     -+..||+++.|+|+++-+ ....+..+++-.|+||.|+++.....   +. ..-..++|
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            4566777777765543     123577777777777755 66677777777777777777765311   11 11122677


Q ss_pred             ceEEEeecC----CCceEEEeCCCccEEEEeeCc-Ee------------------------------eecCCCcccceec
Q 041569          185 EHLLISSCY----GLNALDVDAPRLLSFIFDLNP-IP------------------------------IISTNALCPWNVT  229 (285)
Q Consensus       185 ~~L~l~~~~----~~~~~~~~~p~L~~l~~~~~~-~~------------------------------~~~~~~L~~l~i~  229 (285)
                      |.|.+..|.    ++..+....|+|+.|.+.++. .-                              +...|.|+.+++.
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            777777775    222333456777766666652 10                              1122334444443


Q ss_pred             cccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhh
Q 041569          230 LDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYK  278 (285)
Q Consensus       230 ~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~  278 (285)
                      ...+.++...+ .........+|+||.|.++-++...|+...-...+++
T Consensus       280 ~tgi~si~~~d-~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n  327 (505)
T KOG3207|consen  280 STGIASIAEPD-VESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN  327 (505)
T ss_pred             ccCcchhcCCC-ccchhhhcccccceeeecccCccccccccchhhccch
Confidence            32222221111 1112334567888888888888876654333333333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.03  E-value=4.2e-06  Score=76.06  Aligned_cols=77  Identities=25%  Similarity=0.314  Sum_probs=47.6

Q ss_pred             ccCcCCccEEEEcCeeecC-C--CccccccceEEeeeeec---ChHHHHHHHhCCCccceeeeecCCCcCeEEEcc----
Q 041569          112 IFSAKLLTSLKLVGCKLEL-P--SFTCAHLKKLLLSEFPL---NDRELHHLISKCPLLEDLSISHCHSLGRIMISS----  181 (285)
Q Consensus       112 ~~~~~~L~~L~L~~~~~~~-~--~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~----  181 (285)
                      +...+||+.+++..+.+.. +  .....+|+.|+|.++.+   +.+.+.    ..|.||.|+++... +..+.-++    
T Consensus        98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~----~l~alrslDLSrN~-is~i~~~sfp~~  172 (873)
T KOG4194|consen   98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELS----ALPALRSLDLSRNL-ISEIPKPSFPAK  172 (873)
T ss_pred             HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHH----hHhhhhhhhhhhch-hhcccCCCCCCC
Confidence            3456788888888877665 2  23356688888888865   444443    45778888887653 33332222    


Q ss_pred             CCcceEEEeecC
Q 041569          182 NKLEHLLISSCY  193 (285)
Q Consensus       182 ~~L~~L~l~~~~  193 (285)
                      +++++|++.+..
T Consensus       173 ~ni~~L~La~N~  184 (873)
T KOG4194|consen  173 VNIKKLNLASNR  184 (873)
T ss_pred             CCceEEeecccc
Confidence            566666666653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.97  E-value=2.6e-06  Score=74.07  Aligned_cols=167  Identities=20%  Similarity=0.121  Sum_probs=108.6

Q ss_pred             CCCceEEEEeeeCCCccc---cCCccccCc-CCccEEEEcCeeecC--------CCccccccceEEeeeeecChHHHHHH
Q 041569           89 NGLEVLDFMVIADENTYY---ALPQTIFSA-KLLTSLKLVGCKLEL--------PSFTCAHLKKLLLSEFPLNDRELHHL  156 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~---~l~~~~~~~-~~L~~L~L~~~~~~~--------~~~~~~~L~~L~L~~~~~~~~~l~~l  156 (285)
                      +++++++++.+  .....   .+...+..+ ++|+.|++++|.+..        ....+++|++|++.++.++++.+..+
T Consensus       108 ~~L~~L~ls~~--~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  185 (319)
T cd00116         108 SSLQELKLNNN--GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL  185 (319)
T ss_pred             CcccEEEeeCC--ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHH
Confidence            45888888763  22211   122233445 899999999998773        12245789999999999977766555


Q ss_pred             H---hCCCccceeeeecCCCcCeE-------EEc-cCCcceEEEeecCCCce---------EEEeCCCccEEEEeeCcEe
Q 041569          157 I---SKCPLLEDLSISHCHSLGRI-------MIS-SNKLEHLLISSCYGLNA---------LDVDAPRLLSFIFDLNPIP  216 (285)
Q Consensus       157 ~---~~cp~Le~L~l~~c~~~~~~-------~i~-~~~L~~L~l~~~~~~~~---------~~~~~p~L~~l~~~~~~~~  216 (285)
                      .   ..+++|++|++++|. ++..       .+. .++|++|++.+|. +..         +....+.|++|.+.++.+.
T Consensus       186 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         186 AEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            4   455699999999985 2211       111 2789999999985 221         1112479999999998742


Q ss_pred             ----------eecCCCcccceeccccCCCCChhhHHHHHHHhccC-CCceEEEEEeC
Q 041569          217 ----------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGAS-SQIERLCIDFS  262 (285)
Q Consensus       217 ----------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~-~~L~~L~L~~~  262 (285)
                                ....+.|+.++++.+.+...+   ...+.+.+... +.|+.|++..+
T Consensus       264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEG---AQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             cHHHHHHHHHHhcCCCccEEECCCCCCcHHH---HHHHHHHHhhcCCchhhcccCCC
Confidence                      122357888887764443322   34455666666 78888887654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.94  E-value=2.1e-06  Score=74.89  Aligned_cols=147  Identities=21%  Similarity=0.248  Sum_probs=78.2

Q ss_pred             ccccccceEEeeeeec-ChHHHHHHHhCCCccceeeeecCCCcCeEEEc-----cCCcceEEEeecC-----CCceEEEe
Q 041569          133 FTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSISHCHSLGRIMIS-----SNKLEHLLISSCY-----GLNALDVD  201 (285)
Q Consensus       133 ~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~-----~~~L~~L~l~~~~-----~~~~~~~~  201 (285)
                      ..+..|..|...++.. +++.+..+..+|++|+.|.+.+|..+++....     .++|+.+++.+|.     .+..+..+
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            3455566666666533 55666666666666666666666554443332     2566666666665     23344456


Q ss_pred             CCCccEEEEeeCcEeee-----------cCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEE-EeCCCccCCC
Q 041569          202 APRLLSFIFDLNPIPII-----------STNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCI-DFSSVETNSE  269 (285)
Q Consensus       202 ~p~L~~l~~~~~~~~~~-----------~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L-~~~~~~~~~~  269 (285)
                      +|.|+.+.++-+..-.+           ....+..+.++.     -+ .......+.+..|++||.+++ ...++...+.
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n-----~p-~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i  444 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDN-----CP-LITDATLEHLSICRNLERIELIDCQDVTKEAI  444 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecC-----CC-CchHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence            66666666653331000           000111112211     00 111233467788899998776 5566655555


Q ss_pred             chhhhhhhheeecccC
Q 041569          270 DATLHFLYKLRLWTYV  285 (285)
Q Consensus       270 ~~~f~~L~~L~l~~~~  285 (285)
                      .++=..|++++.+-|+
T Consensus       445 ~~~~~~lp~i~v~a~~  460 (483)
T KOG4341|consen  445 SRFATHLPNIKVHAYF  460 (483)
T ss_pred             HHHHhhCccceehhhc
Confidence            5666677777777664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.79  E-value=1.1e-06  Score=80.59  Aligned_cols=124  Identities=32%  Similarity=0.371  Sum_probs=80.8

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCe-eecC--------CCccccccceEEeeeee-cChHHHHHHHh
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGC-KLEL--------PSFTCAHLKKLLLSEFP-LNDRELHHLIS  158 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~--------~~~~~~~L~~L~L~~~~-~~~~~l~~l~~  158 (285)
                      ++++.+.+..+. ......+-.....|++|++|.+++| ....        ....+++|+.|++.++. +++..+..+..
T Consensus       188 ~~L~~l~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  188 PLLKRLSLSGCS-KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             chhhHhhhcccc-cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            456666655421 1111113344456888999998873 2211        33457888999999887 78888888888


Q ss_pred             CCCccceeeeecCCCcCeEEEcc-----CCcceEEEeecCCC-----ceEEEeCCCccEEEEeeC
Q 041569          159 KCPLLEDLSISHCHSLGRIMISS-----NKLEHLLISSCYGL-----NALDVDAPRLLSFIFDLN  213 (285)
Q Consensus       159 ~cp~Le~L~l~~c~~~~~~~i~~-----~~L~~L~l~~~~~~-----~~~~~~~p~L~~l~~~~~  213 (285)
                      .||+||.|.+.+|..++...+..     +.|++|++.+|..+     ..+...+|+|+.|.+.+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            89999999988888665544432     77999999888732     223335777777655443

>PLN03210 Resistant to P

Probab=97.76  E-value=3.4e-05  Score=78.51  Aligned_cols=74  Identities=26%  Similarity=0.275  Sum_probs=42.1

Q ss_pred             CCccceeeeecCCCcCeEE--Ecc-CCcceEEEeecCCCceEEE--eCCCccEEEEeeCcE--ee-ecCCCcccceeccc
Q 041569          160 CPLLEDLSISHCHSLGRIM--ISS-NKLEHLLISSCYGLNALDV--DAPRLLSFIFDLNPI--PI-ISTNALCPWNVTLD  231 (285)
Q Consensus       160 cp~Le~L~l~~c~~~~~~~--i~~-~~L~~L~l~~~~~~~~~~~--~~p~L~~l~~~~~~~--~~-~~~~~L~~l~i~~~  231 (285)
                      +|+|+.|++++|.....+.  +.. ++|+.|++.+|..+..+..  ..++|++|+++++..  .+ ...++++.++++..
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n  856 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRT  856 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCC
Confidence            4566666666665444322  112 6788888888875555542  457788888877641  11 11235666666554


Q ss_pred             cC
Q 041569          232 CD  233 (285)
Q Consensus       232 ~~  233 (285)
                      .+
T Consensus       857 ~i  858 (1153)
T PLN03210        857 GI  858 (1153)
T ss_pred             CC
Confidence            33

syringae 6; Provisional

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.69  E-value=1.3e-05  Score=76.40  Aligned_cols=136  Identities=17%  Similarity=0.188  Sum_probs=75.7

Q ss_pred             CCccEEEEcCeee-cC-----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeE-EEcc-CCcceE
Q 041569          116 KLLTSLKLVGCKL-EL-----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRI-MISS-NKLEHL  187 (285)
Q Consensus       116 ~~L~~L~L~~~~~-~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~-~i~~-~~L~~L  187 (285)
                      .+|++|+++|... ..     .+.-||+|++|.+.+..+..+++..+...+|+|..|+++++. ++.+ .++. .+|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHH
Confidence            5677777776432 11     334578888888888877666677777788888888888774 3322 2333 455555


Q ss_pred             EEeecCC---CceEEE-eCCCccEEEEeeCcEe------------eecCCCcccceeccccCCCCChhhHHHHHHHhccC
Q 041569          188 LISSCYG---LNALDV-DAPRLLSFIFDLNPIP------------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGAS  251 (285)
Q Consensus       188 ~l~~~~~---~~~~~~-~~p~L~~l~~~~~~~~------------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~  251 (285)
                      .+.+-..   ..-.++ ...+|+.|+++.....            -...|.|+.++.+..      +.....++.++.+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT------di~~~~le~ll~sH  274 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT------DINEEILEELLNSH  274 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc------chhHHHHHHHHHhC
Confidence            5444320   111112 4566777777665410            012356666665531      11223445566666


Q ss_pred             CCceEEE
Q 041569          252 SQIERLC  258 (285)
Q Consensus       252 ~~L~~L~  258 (285)
                      |+|+...
T Consensus       275 ~~L~~i~  281 (699)
T KOG3665|consen  275 PNLQQIA  281 (699)
T ss_pred             ccHhhhh
Confidence            6666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.57  E-value=0.00019  Score=69.20  Aligned_cols=112  Identities=25%  Similarity=0.180  Sum_probs=53.7

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecCCCccccccceEEeeeeecChHHHHHHHhCCCccceeee
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSI  168 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  168 (285)
                      .+-..++++.  .  ....+|..+.  ++|+.|.+.+|.+...+...++|++|+|+++.++.-  -   ...++|+.|++
T Consensus       201 ~~~~~LdLs~--~--~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsL--P---~lp~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGE--S--GLTTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSL--P---VLPPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCC--C--CCCcCCcchh--cCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcc--c---Ccccccceeec
Confidence            3444555544  2  2334665443  367777777776654333356777777777755311  0   12355666666


Q ss_pred             ecCCCcCeEEEccCCcceEEEeecCCCceEEEeCCCccEEEEeeC
Q 041569          169 SHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLN  213 (285)
Q Consensus       169 ~~c~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~  213 (285)
                      .++. +..+.-...+|+.|.+.++ .+..+....|+|+.|+++++
T Consensus       270 s~N~-L~~Lp~lp~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N  312 (788)
T PRK15387        270 FSNP-LTHLPALPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDN  312 (788)
T ss_pred             cCCc-hhhhhhchhhcCEEECcCC-ccccccccccccceeECCCC
Confidence            5553 2211111134444444444 23333223344444444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.57  E-value=9.9e-06  Score=63.99  Aligned_cols=79  Identities=24%  Similarity=0.213  Sum_probs=30.4

Q ss_pred             CcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCC--CcCeEE-Ecc-CCcceE
Q 041569          114 SAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCH--SLGRIM-ISS-NKLEHL  187 (285)
Q Consensus       114 ~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~--~~~~~~-i~~-~~L~~L  187 (285)
                      ...+|+.|+|++|.+..  ....++.|++|.+.++.++.-. ..+...||+|++|.+++..  .+..+. +.. ++|+.|
T Consensus        40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            35788999999988776  3345889999999999874321 1223468999999998764  222211 111 555555


Q ss_pred             EEeecC
Q 041569          188 LISSCY  193 (285)
Q Consensus       188 ~l~~~~  193 (285)
                      ++.+++
T Consensus       119 ~L~~NP  124 (175)
T PF14580_consen  119 SLEGNP  124 (175)
T ss_dssp             E-TT-G
T ss_pred             eccCCc
Confidence            555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.35  E-value=0.0003  Score=67.92  Aligned_cols=54  Identities=22%  Similarity=0.260  Sum_probs=28.5

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-CCccccccceEEeeeeec
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPL  148 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~  148 (285)
                      .+...+.+..    .....+|..+  .++|+.|+|++|.+.. +..-+++|++|++.++.+
T Consensus       178 ~~~~~L~L~~----~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~L  232 (754)
T PRK15370        178 NNKTELRLKI----LGLTTIPACI--PEQITTLILDNNELKSLPENLQGNIKTLYANSNQL  232 (754)
T ss_pred             cCceEEEeCC----CCcCcCCccc--ccCCcEEEecCCCCCcCChhhccCCCEEECCCCcc
Confidence            3455555544    2233445433  2467777777766554 222345666666666655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.34  E-value=0.00025  Score=68.41  Aligned_cols=34  Identities=24%  Similarity=0.224  Sum_probs=20.9

Q ss_pred             cCCccEEEEcCeeecCCCccccccceEEeeeeec
Q 041569          115 AKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPL  148 (285)
Q Consensus       115 ~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~~  148 (285)
                      .++|++|++++|.+...+...++|+.|++.++.+
T Consensus       241 p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        241 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPL  274 (788)
T ss_pred             CCCCcEEEecCCccCcccCcccccceeeccCCch
Confidence            3678888888776654222245666666666544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.32  E-value=9.3e-05  Score=70.76  Aligned_cols=132  Identities=20%  Similarity=0.121  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHCCCceEEEEeeeCCCccccCCccccC-cCCccEEEEcCeeecC-----CCccccccceEEeeeeecChHH
Q 041569           79 FDKWIELATENGLEVLDFMVIADENTYYALPQTIFS-AKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPLNDRE  152 (285)
Q Consensus        79 ~~~~l~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~  152 (285)
                      ++..+......++++|++...  ..-...-+..++. +|+|++|.++|-.+..     .-.+||+|..|+++++.++.- 
T Consensus       112 L~~~Ln~~sr~nL~~LdI~G~--~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-  188 (699)
T KOG3665|consen  112 LKDLLNEESRQNLQHLDISGS--ELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-  188 (699)
T ss_pred             HHHHHhHHHHHhhhhcCcccc--chhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-
Confidence            334444556678999999762  2222233333443 7999999999987754     446899999999999988543 


Q ss_pred             HHHHHhCCCccceeeeecCCCcCeE---EEcc-CCcceEEEeecCCCce---------EEEeCCCccEEEEeeCcE
Q 041569          153 LHHLISKCPLLEDLSISHCHSLGRI---MISS-NKLEHLLISSCYGLNA---------LDVDAPRLLSFIFDLNPI  215 (285)
Q Consensus       153 l~~l~~~cp~Le~L~l~~c~~~~~~---~i~~-~~L~~L~l~~~~~~~~---------~~~~~p~L~~l~~~~~~~  215 (285)
                        ..++...+|+.|.+.+-..-...   .+.. .+|+.|+|+.-.....         -....|+|+.|+++|..+
T Consensus       189 --~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  189 --SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             --HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence              33677899999998865432222   2222 7899999988762111         112489999999999873

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.25  E-value=0.0005  Score=66.48  Aligned_cols=169  Identities=12%  Similarity=0.145  Sum_probs=85.8

Q ss_pred             CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-CCccccccceEEeeeeecChHHHHHHHhCCCccceeee
Q 041569           90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSI  168 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  168 (285)
                      +++.+.+..  .  ....+|..++  ++|+.|++++|.+.. +..-.++|+.|.|.++.+..  +-.-+  ..+|+.|++
T Consensus       200 ~L~~L~Ls~--N--~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~L  269 (754)
T PRK15370        200 QITTLILDN--N--ELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSINRITE--LPERL--PSALQSLDL  269 (754)
T ss_pred             CCcEEEecC--C--CCCcCChhhc--cCCCEEECCCCccccCChhhhccccEEECcCCccCc--CChhH--hCCCCEEEC
Confidence            455555544  1  1223444333  467777777776654 21123467777777775531  10001  246777777


Q ss_pred             ecCCCcCeEEEc-cCCcceEEEeecCCCceEEEe-CCCccEEEEeeCcEe---eecCCCcccceeccccCCCCChhhHHH
Q 041569          169 SHCHSLGRIMIS-SNKLEHLLISSCYGLNALDVD-APRLLSFIFDLNPIP---IISTNALCPWNVTLDCDSNLDCDWFLS  243 (285)
Q Consensus       169 ~~c~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~-~p~L~~l~~~~~~~~---~~~~~~L~~l~i~~~~~~~~~~~~~~~  243 (285)
                      +++ .++.+.-. .++|+.|++.+| .+..+... .++|+.|++.++.+.   ....++|+.+.+....+..++.     
T Consensus       270 s~N-~L~~LP~~l~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~-----  342 (754)
T PRK15370        270 FHN-KISCLPENLPEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA-----  342 (754)
T ss_pred             cCC-ccCccccccCCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCCh-----
Confidence            644 34332111 146777777776 34433321 235667766666532   1122456666665544433322     


Q ss_pred             HHHHhccCCCceEEEEEeCCCccCCCchhhhhhhheee
Q 041569          244 LKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLRL  281 (285)
Q Consensus       244 l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~l  281 (285)
                        .+   +++|+.|+++.+.+...+. .+..+|+.|.+
T Consensus       343 --~l---~~sL~~L~Ls~N~L~~LP~-~lp~~L~~LdL  374 (754)
T PRK15370        343 --SL---PPELQVLDVSKNQITVLPE-TLPPTITTLDV  374 (754)
T ss_pred             --hh---cCcccEEECCCCCCCcCCh-hhcCCcCEEEC
Confidence              11   2688888888777765432 22344554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.25  E-value=6.2e-05  Score=59.47  Aligned_cols=96  Identities=25%  Similarity=0.356  Sum_probs=28.1

Q ss_pred             CcCCccEEEEcCeeecC---CCccccccceEEeeeeecCh-HHHHHHHhCCCccceeeeecCCCcCeEE--Ec--cCCcc
Q 041569          114 SAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLND-RELHHLISKCPLLEDLSISHCHSLGRIM--IS--SNKLE  185 (285)
Q Consensus       114 ~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~c~~~~~~~--i~--~~~L~  185 (285)
                      ++..+++|+|.|+.+..   ....+.+|+.|+|+++.++. ++    +..+++|++|++++.. ++.+.  +.  .|+|+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccccccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCC-CCccccchHHhCCcCC
Confidence            34578888999887765   33357888888888887732 22    4457888888888764 33321  21  26777


Q ss_pred             eEEEeecC--CCceEE-E-eCCCccEEEEeeCc
Q 041569          186 HLLISSCY--GLNALD-V-DAPRLLSFIFDLNP  214 (285)
Q Consensus       186 ~L~l~~~~--~~~~~~-~-~~p~L~~l~~~~~~  214 (285)
                      +|.+.+..  .+..+. + .+|+|+.|++.|++
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence            77776654  222221 1 45666666666654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.16  E-value=0.00017  Score=46.45  Aligned_cols=56  Identities=29%  Similarity=0.214  Sum_probs=34.9

Q ss_pred             CCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCC
Q 041569          116 KLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCH  172 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  172 (285)
                      |+|+.|.+++|.+..    ....+++|++|+++++.++.-. ...+..+|+|+.|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence            467777888776554    2235777777777777552111 1125567778888777663

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.09  E-value=0.00025  Score=59.78  Aligned_cols=169  Identities=17%  Similarity=0.134  Sum_probs=112.5

Q ss_pred             CCCceEEEEeeeCCCcc-ccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTY-YALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      ..++++++...  .... ..+.+.+.+.|.|+.|+|+.+.+..    .+.+..+|++|.|.+...+.......++..|.+
T Consensus        71 ~~v~elDL~~N--~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELDLTGN--LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhcccc--hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            46888887762  1111 2233344457999999999998865    335678999999999999888899999999999


Q ss_pred             ceeeeecCC----CcCeEEEc--cCCcceEEEeecC-----CCceEEEeCCCccEEEEeeCcEe-------eecCCCccc
Q 041569          164 EDLSISHCH----SLGRIMIS--SNKLEHLLISSCY-----GLNALDVDAPRLLSFIFDLNPIP-------IISTNALCP  225 (285)
Q Consensus       164 e~L~l~~c~----~~~~~~i~--~~~L~~L~l~~~~-----~~~~~~~~~p~L~~l~~~~~~~~-------~~~~~~L~~  225 (285)
                      ++|+++...    +++.-++.  ++.++.|....|.     ....+.-..||+..+.+..+++.       ....|.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            999998762    22222222  3789999999997     22334445789998888777532       123344444


Q ss_pred             ceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          226 WNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       226 l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      +++....+++      +...+-+.++|.|..|.+....+.
T Consensus       229 LnL~~~~ids------wasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  229 LNLGANNIDS------WASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhhccccccc------HHHHHHHcCCchhheeeccCCccc
Confidence            4544322211      223355777888888877665554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.90  E-value=0.00012  Score=67.24  Aligned_cols=104  Identities=29%  Similarity=0.394  Sum_probs=72.3

Q ss_pred             CCCceEEEEee-e-CCCccccCCccccCcCCccEEEEcCee-ecC-----CCccccccceEEeeeee-cChHHHHHHHhC
Q 041569           89 NGLEVLDFMVI-A-DENTYYALPQTIFSAKLLTSLKLVGCK-LEL-----PSFTCAHLKKLLLSEFP-LNDRELHHLISK  159 (285)
Q Consensus        89 ~~l~~L~l~~~-~-~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~-----~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~  159 (285)
                      +.++++++..+ . ..............|++|+.|+++.|. ..+     .+..|++|++|.+.+|. ++++++..+...
T Consensus       214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~  293 (482)
T KOG1947|consen  214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER  293 (482)
T ss_pred             chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence            57888887651 0 011111122244458999999999997 544     33459999999999897 799999999999


Q ss_pred             CCccceeeeecCCCcCeEEEc-----cCCcceEEEeec
Q 041569          160 CPLLEDLSISHCHSLGRIMIS-----SNKLEHLLISSC  192 (285)
Q Consensus       160 cp~Le~L~l~~c~~~~~~~i~-----~~~L~~L~l~~~  192 (285)
                      ||+|++|++++|..++...+.     +++++.|.+..+
T Consensus       294 ~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  294 CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             cCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            999999999999876432221     255555555444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.74  E-value=2.5e-05  Score=71.80  Aligned_cols=109  Identities=19%  Similarity=0.189  Sum_probs=53.9

Q ss_pred             ccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-
Q 041569          104 TYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-  178 (285)
Q Consensus       104 ~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-  178 (285)
                      +...+|+++....+|++|+|+++.+..    ...++.+|.+|.+++..-+...+-.-+....+|..++++.. ++..+. 
T Consensus       161 rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPe  239 (1255)
T KOG0444|consen  161 RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPE  239 (1255)
T ss_pred             hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchH
Confidence            445666666666777777777765543    12233444444454443222222222334456666666633 232211 


Q ss_pred             -E-ccCCcceEEEeecCCCceEEEe---CCCccEEEEeeCc
Q 041569          179 -I-SSNKLEHLLISSCYGLNALDVD---APRLLSFIFDLNP  214 (285)
Q Consensus       179 -i-~~~~L~~L~l~~~~~~~~~~~~---~p~L~~l~~~~~~  214 (285)
                       + .-++|+.|++++.. ++++...   =-+|++|.++.+.
T Consensus       240 cly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  240 CLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ  279 (1255)
T ss_pred             HHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch
Confidence             0 01667777776652 3333321   1456666666655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.59  E-value=0.00016  Score=66.79  Aligned_cols=127  Identities=21%  Similarity=0.212  Sum_probs=75.5

Q ss_pred             ccCCccccC-cCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc
Q 041569          106 YALPQTIFS-AKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS  181 (285)
Q Consensus       106 ~~l~~~~~~-~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~  181 (285)
                      ..+|..++. ...|-.|+|+++++..   ....+.+|++|.|+++.+....+.. +-....|+.|.+++-. -+...++.
T Consensus       139 etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~Tq-RTl~N~Pt  216 (1255)
T KOG0444|consen  139 ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQ-RTLDNIPT  216 (1255)
T ss_pred             ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhccccc-chhhcCCC
Confidence            445555544 3556667777776554   2245777888888888765555554 2234455566666542 12222322


Q ss_pred             -----CCcceEEEeecCCCceEE---EeCCCccEEEEeeCcEeeecCC-----CcccceeccccCCC
Q 041569          182 -----NKLEHLLISSCYGLNALD---VDAPRLLSFIFDLNPIPIISTN-----ALCPWNVTLDCDSN  235 (285)
Q Consensus       182 -----~~L~~L~l~~~~~~~~~~---~~~p~L~~l~~~~~~~~~~~~~-----~L~~l~i~~~~~~~  235 (285)
                           .+|+.++++.. ++..+.   ...++|++|.++|+.+.-..+.     .++.++++.+.+..
T Consensus       217 sld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~  282 (1255)
T KOG0444|consen  217 SLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV  282 (1255)
T ss_pred             chhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc
Confidence                 67888888876 344443   2578999999999985433332     57777776644433

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.57  E-value=0.0033  Score=32.83  Aligned_cols=25  Identities=36%  Similarity=0.680  Sum_probs=22.1

Q ss_pred             ccceEEeeeeec-ChHHHHHHHhCCC
Q 041569          137 HLKKLLLSEFPL-NDRELHHLISKCP  161 (285)
Q Consensus       137 ~L~~L~L~~~~~-~~~~l~~l~~~cp  161 (285)
                      +||+|.|..+.| ++..++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999 5558999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.54  E-value=0.0009  Score=57.52  Aligned_cols=189  Identities=14%  Similarity=0.094  Sum_probs=100.5

Q ss_pred             hhHHHHHHHHHHH--CCCceEEEEeeeCCCccccCC-------ccccCcCCccEEEEcCeeecC--------CCcccccc
Q 041569           76 SPLFDKWIELATE--NGLEVLDFMVIADENTYYALP-------QTIFSAKLLTSLKLVGCKLEL--------PSFTCAHL  138 (285)
Q Consensus        76 ~~~~~~~l~~~~~--~~l~~L~l~~~~~~~~~~~l~-------~~~~~~~~L~~L~L~~~~~~~--------~~~~~~~L  138 (285)
                      +....+|+.....  +.+++..++.....+....+|       ..+..|+.|+.|+||.|.+.+        ...++..|
T Consensus        43 G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L  122 (382)
T KOG1909|consen   43 GTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDL  122 (382)
T ss_pred             hHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCH
Confidence            3445666666554  234444443321222222233       334457788888888887755        11246777


Q ss_pred             ceEEeeeeecCh---HHH---------HHHHhCCCccceeeeecCCCcC----eE--EEc-cCCcceEEEeecC-CCceE
Q 041569          139 KKLLLSEFPLND---REL---------HHLISKCPLLEDLSISHCHSLG----RI--MIS-SNKLEHLLISSCY-GLNAL  198 (285)
Q Consensus       139 ~~L~L~~~~~~~---~~l---------~~l~~~cp~Le~L~l~~c~~~~----~~--~i~-~~~L~~L~l~~~~-~~~~~  198 (285)
                      ++|.|.+|.++.   ..+         ...+..-|.|+++...+..--.    .+  .+. ++.|+.+++.... ....+
T Consensus       123 ~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~  202 (382)
T KOG1909|consen  123 EELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV  202 (382)
T ss_pred             HHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh
Confidence            888887776632   221         2223345667777666553111    00  111 1677777776654 11111


Q ss_pred             -----E-EeCCCccEEEEeeCcEe----------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeC
Q 041569          199 -----D-VDAPRLLSFIFDLNPIP----------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFS  262 (285)
Q Consensus       199 -----~-~~~p~L~~l~~~~~~~~----------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~  262 (285)
                           . .++|.|+.|++.++.+.          +..-|.|+.++++...+..-+...  -+..+-.+.|+|+.|.+.++
T Consensus       203 ~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a--~~~al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  203 TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA--FVDALKESAPSLEVLELAGN  280 (382)
T ss_pred             HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH--HHHHHhccCCCCceeccCcc
Confidence                 1 25788888888887632          222335666666554443333321  12234456788888888887


Q ss_pred             CCcc
Q 041569          263 SVET  266 (285)
Q Consensus       263 ~~~~  266 (285)
                      .+..
T Consensus       281 eIt~  284 (382)
T KOG1909|consen  281 EITR  284 (382)
T ss_pred             hhHH
Confidence            7764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.0029  Score=53.58  Aligned_cols=96  Identities=18%  Similarity=0.220  Sum_probs=68.3

Q ss_pred             ccEEEEcCeeecC------CCccccccceEEeeeeec-ChHHHHHHHhCCCccceeeeecCC---CcCeEEEccCCcceE
Q 041569          118 LTSLKLVGCKLEL------PSFTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSISHCH---SLGRIMISSNKLEHL  187 (285)
Q Consensus       118 L~~L~L~~~~~~~------~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~---~~~~~~i~~~~L~~L  187 (285)
                      +.-|.+.+|.+..      .+..+..++.|+|.++.+ +++.+..++.+.|+|+.|+++...   .+..+..+..+|+.|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            4456666776654      334578999999999988 668999999999999999999654   233333344788888


Q ss_pred             EEeecC-CC---ceEEEeCCCccEEEEeeC
Q 041569          188 LISSCY-GL---NALDVDAPRLLSFIFDLN  213 (285)
Q Consensus       188 ~l~~~~-~~---~~~~~~~p~L~~l~~~~~  213 (285)
                      .+-+.+ .+   ++.--..|.++.|+.+.+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            888876 22   222235677777777666

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.05  E-value=0.0059  Score=39.12  Aligned_cols=55  Identities=27%  Similarity=0.286  Sum_probs=40.2

Q ss_pred             CCceEEEEeeeCCCccccCCcccc-CcCCccEEEEcCeeecC----CCccccccceEEeeeeec
Q 041569           90 GLEVLDFMVIADENTYYALPQTIF-SAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPL  148 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~  148 (285)
                      +++.+++..  +  ....+|...+ .+++|+.|++++|.+..    ...++++|++|++.++.+
T Consensus         2 ~L~~L~l~~--n--~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSN--N--KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETS--S--TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCC--C--CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            566676655  2  3445665554 48999999999998765    345799999999988753

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.00  E-value=0.0013  Score=52.43  Aligned_cols=46  Identities=26%  Similarity=0.333  Sum_probs=30.5

Q ss_pred             cccccceEEeeee-ecChHHHHHHHhCCCccceeeeecCCCcCeEEE
Q 041569          134 TCAHLKKLLLSEF-PLNDRELHHLISKCPLLEDLSISHCHSLGRIMI  179 (285)
Q Consensus       134 ~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i  179 (285)
                      +++.++.|.+.+| .++|..++.+-.-.|+|+.|++++|+.+++-.+
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL  169 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL  169 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence            4566667777777 347777777666677777777777776654333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.87  E-value=0.0016  Score=55.12  Aligned_cols=40  Identities=18%  Similarity=0.080  Sum_probs=19.7

Q ss_pred             HCCCceEEEEeeeCCC-----ccccCCccccCcCCccEEEEcCee
Q 041569           88 ENGLEVLDFMVIADEN-----TYYALPQTIFSAKLLTSLKLVGCK  127 (285)
Q Consensus        88 ~~~l~~L~l~~~~~~~-----~~~~l~~~~~~~~~L~~L~L~~~~  127 (285)
                      ...+.-+.++......     ....+|..+....+|+.++++.|.
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~  225 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS  225 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc
Confidence            3456666655432222     222333333345677777777664

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=95.69  E-value=0.0066  Score=53.54  Aligned_cols=37  Identities=27%  Similarity=0.416  Sum_probs=33.3

Q ss_pred             cCCCCCHHHHHHHhcCCCh-hhHHhhhhcccchhhccc
Q 041569            7 QISDLPPSIIHHIMTYLSA-KEVTRTSILSTSWNQFQN   43 (285)
Q Consensus         7 ~~~~LP~~il~~I~s~L~~-~~~~~~~~vskrWr~lw~   43 (285)
                      .|++||+|+|..|..+|+. -|.+|.+.|||.||..-.
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            4899999999999999964 899999999999998643

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.68  E-value=0.018  Score=51.55  Aligned_cols=89  Identities=21%  Similarity=0.209  Sum_probs=38.7

Q ss_pred             CccEEEEcCeee-cCCCcc-ccccceEEeeeee-cChHHHHHHHhCCCccceeeeecCCCcCeEEEccCCcceEEEeecC
Q 041569          117 LLTSLKLVGCKL-ELPSFT-CAHLKKLLLSEFP-LNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCY  193 (285)
Q Consensus       117 ~L~~L~L~~~~~-~~~~~~-~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~~~L~~L~l~~~~  193 (285)
                      +|++|.+++|.- ...+.. .++|++|.+++|. +.     .   --+.|+.|++.+ .....+..-.++|+.|.+....
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-----s---LP~sLe~L~L~~-n~~~~L~~LPssLk~L~I~~~n  143 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-----G---LPESVRSLEIKG-SATDSIKNVPNGLTSLSINSYN  143 (426)
T ss_pred             CCcEEEccCCCCcccCCchhhhhhhheEccCccccc-----c---cccccceEEeCC-CCCcccccCcchHhheeccccc
Confidence            567777766532 111111 2456666666652 21     1   124566666542 2222222222456666654321


Q ss_pred             CCce--EE-EeCCCccEEEEeeCc
Q 041569          194 GLNA--LD-VDAPRLLSFIFDLNP  214 (285)
Q Consensus       194 ~~~~--~~-~~~p~L~~l~~~~~~  214 (285)
                      ....  +. .-.++|++|.+.++.
T Consensus       144 ~~~~~~lp~~LPsSLk~L~Is~c~  167 (426)
T PRK15386        144 PENQARIDNLISPSLKTLSLTGCS  167 (426)
T ss_pred             cccccccccccCCcccEEEecCCC
Confidence            1100  01 112456666666654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.49  E-value=0.0046  Score=52.98  Aligned_cols=37  Identities=27%  Similarity=0.576  Sum_probs=34.9

Q ss_pred             CCcCCCCC----HHHHHHHhcCCChhhHHhhhhcccchhhc
Q 041569            5 VDQISDLP----PSIIHHIMTYLSAKEVTRTSILSTSWNQF   41 (285)
Q Consensus         5 ~d~~~~LP----~~il~~I~s~L~~~~~~~~~~vskrWr~l   41 (285)
                      .|.+..||    ++|...||+||+..++..+-.|||+|+++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            47899999    99999999999999999999999999975

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.35  E-value=0.011  Score=35.18  Aligned_cols=35  Identities=34%  Similarity=0.408  Sum_probs=18.5

Q ss_pred             cccceEEeeeeecChHHHHHHHhCCCccceeeeecCC
Q 041569          136 AHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCH  172 (285)
Q Consensus       136 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  172 (285)
                      ++|++|++.++.+++  +...++.||+|+.|+++++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            345666666665532  22235566666666666663

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=95.30  E-value=0.0037  Score=60.25  Aligned_cols=96  Identities=21%  Similarity=0.160  Sum_probs=51.9

Q ss_pred             cCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeE-EEcc-CCcceEE
Q 041569          115 AKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRI-MISS-NKLEHLL  188 (285)
Q Consensus       115 ~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~-~i~~-~~L~~L~  188 (285)
                      .++|+.|+|+.+.+..    ....++.|+.|+|+|+..+.-.  .-+..|+.|++|...+.. +..+ .+.. ++|+.++
T Consensus       382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp--~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lD  458 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP--DTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLD  458 (1081)
T ss_pred             ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh--HHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEe
Confidence            3566666666665443    2234566666666666552211  224456666666554432 1111 2222 7777887


Q ss_pred             EeecCCCceEEE----eCCCccEEEEeeCc
Q 041569          189 ISSCYGLNALDV----DAPRLLSFIFDLNP  214 (285)
Q Consensus       189 l~~~~~~~~~~~----~~p~L~~l~~~~~~  214 (285)
                      ++.. .+..+.+    ..|+|++|+++|+.
T Consensus       459 lS~N-~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  459 LSCN-NLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cccc-hhhhhhhhhhCCCcccceeeccCCc
Confidence            7766 3443332    22688888888876

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.28  E-value=0.017  Score=34.43  Aligned_cols=34  Identities=29%  Similarity=0.348  Sum_probs=23.4

Q ss_pred             CCccEEEEcCeeecC--C-CccccccceEEeeeeecC
Q 041569          116 KLLTSLKLVGCKLEL--P-SFTCAHLKKLLLSEFPLN  149 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~--~-~~~~~~L~~L~L~~~~~~  149 (285)
                      ++|++|.++++.+..  . ...+++|++|+++++.++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            467888888887766  2 346888888888888764

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.21  E-value=0.014  Score=50.37  Aligned_cols=104  Identities=22%  Similarity=0.241  Sum_probs=74.4

Q ss_pred             ccCcCCccEEEEcCeeecC--------CCccccccceEEeeeeecCh---HHHHHHHhCCCccceeeeecCCCcC-----
Q 041569          112 IFSAKLLTSLKLVGCKLEL--------PSFTCAHLKKLLLSEFPLND---RELHHLISKCPLLEDLSISHCHSLG-----  175 (285)
Q Consensus       112 ~~~~~~L~~L~L~~~~~~~--------~~~~~~~L~~L~L~~~~~~~---~~l~~l~~~cp~Le~L~l~~c~~~~-----  175 (285)
                      +..+++|+.+++..+.+.+        ....||+|+.|+|..+.|+.   ..+...++.+|+|++|.+++|---+     
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence            3447899999999887655        23569999999999998843   4567778889999999999994211     


Q ss_pred             ---eEEEccCCcceEEEeecC-CC---ceE--E-EeCCCccEEEEeeCcE
Q 041569          176 ---RIMISSNKLEHLLISSCY-GL---NAL--D-VDAPRLLSFIFDLNPI  215 (285)
Q Consensus       176 ---~~~i~~~~L~~L~l~~~~-~~---~~~--~-~~~p~L~~l~~~~~~~  215 (285)
                         .+.-..|+|+.|.+.+|. ..   ..+  . -.-|.|+.|.++|+..
T Consensus       261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence               111224899999999987 00   000  1 1368888888888864

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.99  E-value=0.0058  Score=50.63  Aligned_cols=64  Identities=30%  Similarity=0.281  Sum_probs=35.5

Q ss_pred             HHHHHhCCCccceeeeecCCCcCeEEEcc-CCcceEEEeecC-----CCceEEEeCCCccEEEEeeCcEe
Q 041569          153 LHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLLISSCY-----GLNALDVDAPRLLSFIFDLNPIP  216 (285)
Q Consensus       153 l~~l~~~cp~Le~L~l~~c~~~~~~~i~~-~~L~~L~l~~~~-----~~~~~~~~~p~L~~l~~~~~~~~  216 (285)
                      +..+...+-.|+.|++.+|...+....+. |+||.|.++..+     .+..+...+|+|++++++|+.+.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            33334445555555555554333223333 566666666652     33444446688888888888754

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.66  E-value=0.074  Score=47.73  Aligned_cols=71  Identities=15%  Similarity=0.266  Sum_probs=44.1

Q ss_pred             ccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-EccCCcceEEEeecCCCceEEEeCCCccEEEEeeC
Q 041569          135 CAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-ISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLN  213 (285)
Q Consensus       135 ~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~~~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~  213 (285)
                      ++++++|.+++|.++.-.     .--++|++|.+.+|..++.+. .-.++|++|.+.+|..+..+   .+.|++|.+.+.
T Consensus        51 ~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~~n  122 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGL---PESVRSLEIKGS  122 (426)
T ss_pred             hcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccc---ccccceEEeCCC
Confidence            678888888888542211     112358888888887765432 11268888888888544322   245666666544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.56  E-value=0.037  Score=44.38  Aligned_cols=57  Identities=23%  Similarity=0.298  Sum_probs=33.2

Q ss_pred             cCCccEEEEcCeeecC----CCccccccceEEeeeeec-ChHHHHHHHhCCCccceeeeecCC
Q 041569          115 AKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSISHCH  172 (285)
Q Consensus       115 ~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~  172 (285)
                      .++|..|.|.++.+..    ...-+|+|+.|.|.++++ .-.+++. +..||.|+.|.+-+.+
T Consensus        63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP  124 (233)
T ss_pred             ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence            4566677777665544    223356677777776655 2233333 4466777777666654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=94.44  E-value=0.053  Score=53.72  Aligned_cols=95  Identities=24%  Similarity=0.252  Sum_probs=61.3

Q ss_pred             cCCccEEEEcCeeecC--CCccccccceEEeeeeec-ChHHHHHHHhCCCccceeeeecCCCcCeEE--Ecc-CCcceEE
Q 041569          115 AKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSISHCHSLGRIM--ISS-NKLEHLL  188 (285)
Q Consensus       115 ~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~--i~~-~~L~~L~  188 (285)
                      ....+.+.+.++.+..  ....+|.|++|-+.++.. -...-...+...|.|.+|++++|.....+.  |.. -+||.|+
T Consensus       522 ~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             hhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            3566777777765544  445678999999998852 111112224567999999999987766543  332 6888888


Q ss_pred             EeecCCCceEEEeCCCccEEEE
Q 041569          189 ISSCYGLNALDVDAPRLLSFIF  210 (285)
Q Consensus       189 l~~~~~~~~~~~~~p~L~~l~~  210 (285)
                      +.++ .+..++....+|+.|.+
T Consensus       602 L~~t-~I~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  602 LSDT-GISHLPSGLGNLKKLIY  622 (889)
T ss_pred             ccCC-CccccchHHHHHHhhhe
Confidence            8887 45555555555554443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.38  E-value=0.004  Score=49.72  Aligned_cols=75  Identities=15%  Similarity=0.212  Sum_probs=54.2

Q ss_pred             cceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE-----ccCCcceEEEeecCCCceEEE----eCCCccEE
Q 041569          138 LKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI-----SSNKLEHLLISSCYGLNALDV----DAPRLLSF  208 (285)
Q Consensus       138 L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i-----~~~~L~~L~l~~~~~~~~~~~----~~p~L~~l  208 (285)
                      ++..+-+++.+..++++. +..++.++.|.+.+|..++++.+     .+++|+.|++++|+.+++-.+    ..++|+.|
T Consensus       103 IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            566667777788888888 67899999999999987776543     237888888888875544332    35666666


Q ss_pred             EEeeC
Q 041569          209 IFDLN  213 (285)
Q Consensus       209 ~~~~~  213 (285)
                      .+.+-
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            66553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.37  E-value=0.004  Score=51.56  Aligned_cols=99  Identities=23%  Similarity=0.103  Sum_probs=56.5

Q ss_pred             cCCccEEEEcCeeecC--CCccccccceEEeeeeec-ChHHHHHHHhCCCccceeeeecCCC--cCeEEEc-c-CCcceE
Q 041569          115 AKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSISHCHS--LGRIMIS-S-NKLEHL  187 (285)
Q Consensus       115 ~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~--~~~~~i~-~-~~L~~L  187 (285)
                      ...|+.|++.++.+..  ....+|+|++|.++.+.+ ...++..++..||+|.+|++++..-  +..+.-. . ++|++|
T Consensus        42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            3556666677666654  223467888888887733 2344555566778888888887641  1111111 1 567777


Q ss_pred             EEeecCCCc------eEEEeCCCccEEEEeeC
Q 041569          188 LISSCYGLN------ALDVDAPRLLSFIFDLN  213 (285)
Q Consensus       188 ~l~~~~~~~------~~~~~~p~L~~l~~~~~  213 (285)
                      .+..|....      .+..-+|.|++|+-...
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            777776211      11123566666654443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.97  E-value=0.14  Score=41.17  Aligned_cols=96  Identities=22%  Similarity=0.254  Sum_probs=67.1

Q ss_pred             CCccEEEEcCeeecC--CCccccccceEEeeeeecC--hHHHHHHHhCCCccceeeeecCC--CcCeEE--EccCCcceE
Q 041569          116 KLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLN--DRELHHLISKCPLLEDLSISHCH--SLGRIM--ISSNKLEHL  187 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~c~--~~~~~~--i~~~~L~~L  187 (285)
                      .+...++|+++.+..  ....++.|.+|.|..++++  +..+..+   .|+|..|.+.+..  .+.++.  ..+|+|++|
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhhhhcchhccCCcccee
Confidence            455667777776554  3346889999999999883  3556554   6999999999864  233322  234899999


Q ss_pred             EEeecC-----CCc-eEEEeCCCccEEEEeeCc
Q 041569          188 LISSCY-----GLN-ALDVDAPRLLSFIFDLNP  214 (285)
Q Consensus       188 ~l~~~~-----~~~-~~~~~~p~L~~l~~~~~~  214 (285)
                      .+-+.+     +.. .+.-..|+|+.|++.+..
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            998876     222 333478999999987754

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=93.76  E-value=0.023  Score=48.30  Aligned_cols=36  Identities=19%  Similarity=0.405  Sum_probs=30.6

Q ss_pred             CcCCCCCHHHHHHHhcC-----CChhhHHhhhhcccchhhc
Q 041569            6 DQISDLPPSIIHHIMTY-----LSAKEVTRTSILSTSWNQF   41 (285)
Q Consensus         6 d~~~~LP~~il~~I~s~-----L~~~~~~~~~~vskrWr~l   41 (285)
                      +.|..|||||+..||..     |+.+++.++++|||.|+..
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            44788999999999975     4569999999999999865

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.75  E-value=0.032  Score=28.95  Aligned_cols=18  Identities=33%  Similarity=0.779  Sum_probs=15.1

Q ss_pred             CCccceeeeecCCCcCeE
Q 041569          160 CPLLEDLSISHCHSLGRI  177 (285)
Q Consensus       160 cp~Le~L~l~~c~~~~~~  177 (285)
                      ||+|+.|++++|..+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            789999999999877653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=93.25  E-value=0.0034  Score=48.99  Aligned_cols=112  Identities=23%  Similarity=0.164  Sum_probs=54.3

Q ss_pred             ccccCCccccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEc
Q 041569          104 TYYALPQTIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMIS  180 (285)
Q Consensus       104 ~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~  180 (285)
                      .-..+|..+.+.+.|+.|+++-+++..   ...+||.|+.|+|..+..++..+-.=+-....|..|.+++.+ ++.+.-.
T Consensus        67 qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d  145 (264)
T KOG0617|consen   67 QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD  145 (264)
T ss_pred             hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh
Confidence            344566666666777777776665544   234567777777766655433321111112334555555432 2222212


Q ss_pred             cCCcceEEEeecC--CCceEE--E-eCCCccEEEEeeCcEe
Q 041569          181 SNKLEHLLISSCY--GLNALD--V-DAPRLLSFIFDLNPIP  216 (285)
Q Consensus       181 ~~~L~~L~l~~~~--~~~~~~--~-~~p~L~~l~~~~~~~~  216 (285)
                      ..+|+.|.|-.-.  ++-++.  + ....|+.|++.|+...
T Consensus       146 vg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  146 VGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             hhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence            2333333333222  222221  1 3456777788877643

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.21  E-value=0.067  Score=27.71  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=19.2

Q ss_pred             ccccceEEeeee-ecChHHHHHHHh
Q 041569          135 CAHLKKLLLSEF-PLNDRELHHLIS  158 (285)
Q Consensus       135 ~~~L~~L~L~~~-~~~~~~l~~l~~  158 (285)
                      ||+|++|+|++| .++|.++..+..
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            578889999998 579998887653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=92.91  E-value=0.0079  Score=58.12  Aligned_cols=134  Identities=22%  Similarity=0.206  Sum_probs=69.9

Q ss_pred             CCccEEEEcCeeecC----CCccccccceEEeeeeec---ChHHHHHHHhCCCccceeeeecCCCcCeEEEcc---CCcc
Q 041569          116 KLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPL---NDRELHHLISKCPLLEDLSISHCHSLGRIMISS---NKLE  185 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~---~~L~  185 (285)
                      +.|+.|.+.++.+.+    ...++++||.|+|..+.+   .+..+    .+++.||+|.++|.. ++.+....   +.|+
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~  433 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNK-LTTLPDTVANLGRLH  433 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH----hchHHhHHHhcccch-hhhhhHHHHhhhhhH
Confidence            456666666666655    224577777777777743   44443    345777777777754 33332221   3344


Q ss_pred             eEEEeecCCCceEE-E-eCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEE
Q 041569          186 HLLISSCYGLNALD-V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERL  257 (285)
Q Consensus       186 ~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L  257 (285)
                      .|.-... .+..+. + ..|.|+.++++.+...      ....|.|++++++.+....++.       +.+..+.++...
T Consensus       434 tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~-------~~l~~l~~l~~~  505 (1081)
T KOG0618|consen  434 TLRAHSN-QLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDH-------KTLKVLKSLSQM  505 (1081)
T ss_pred             HHhhcCC-ceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccch-------hhhHHhhhhhhe
Confidence            4333222 122221 2 4577777777776521      1122577877777643322222       444555555555


Q ss_pred             EEEeC
Q 041569          258 CIDFS  262 (285)
Q Consensus       258 ~L~~~  262 (285)
                      +++..
T Consensus       506 ~i~~~  510 (1081)
T KOG0618|consen  506 DITLN  510 (1081)
T ss_pred             ecccC
Confidence            55554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=92.22  E-value=0.013  Score=45.87  Aligned_cols=56  Identities=29%  Similarity=0.321  Sum_probs=32.9

Q ss_pred             ccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeee
Q 041569          112 IFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSIS  169 (285)
Q Consensus       112 ~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~  169 (285)
                      ++..+++..|.|+.+.+..   ..+.+.+|+.|+++++.+.+  +-.-++..|+|+.|+++
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvg   87 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVG   87 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecc
Confidence            4556666777777766544   22356677777777665522  22225556667766665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=91.85  E-value=0.061  Score=48.29  Aligned_cols=95  Identities=22%  Similarity=0.207  Sum_probs=60.4

Q ss_pred             CCccEEEEcCeeecC--CCcc-c-cccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE--ccCCcceEEE
Q 041569          116 KLLTSLKLVGCKLEL--PSFT-C-AHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI--SSNKLEHLLI  189 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~--~~~~-~-~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i--~~~~L~~L~l  189 (285)
                      +.+..|.+.++.+..  .... . ++|+.|++.+..+.+..  .-+..+|+|+.|+++++.-.+-...  ..+.|+.|.+
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            567888888776655  2223 3 27888888888764321  2245688899998888863222222  3477888888


Q ss_pred             eecCCCceEEE--eCCC-ccEEEEeeC
Q 041569          190 SSCYGLNALDV--DAPR-LLSFIFDLN  213 (285)
Q Consensus       190 ~~~~~~~~~~~--~~p~-L~~l~~~~~  213 (285)
                      ++. .+..+.-  ..++ |+++.+.+.
T Consensus       194 s~N-~i~~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         194 SGN-KISDLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             cCC-ccccCchhhhhhhhhhhhhhcCC
Confidence            877 3444443  2444 888887777

>PLN03150 hypothetical protein; Provisional

Probab=91.82  E-value=0.14  Score=49.08  Aligned_cols=75  Identities=20%  Similarity=0.153  Sum_probs=47.2

Q ss_pred             ccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeE--EEcc-CCcceEEEe
Q 041569          118 LTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRI--MISS-NKLEHLLIS  190 (285)
Q Consensus       118 L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i~~-~~L~~L~l~  190 (285)
                      ++.|+|+++.+..    ....+++|+.|+|.++.+... +-..+..+++|+.|+++++.-...+  .+.. ++|+.|++.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            6777888776653    123578888888888766321 2222566788888888877532221  1222 678888888


Q ss_pred             ecC
Q 041569          191 SCY  193 (285)
Q Consensus       191 ~~~  193 (285)
                      ++.
T Consensus       499 ~N~  501 (623)
T PLN03150        499 GNS  501 (623)
T ss_pred             CCc
Confidence            774

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=91.17  E-value=0.015  Score=55.00  Aligned_cols=39  Identities=28%  Similarity=0.422  Sum_probs=24.3

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeec
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLE  129 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  129 (285)
                      ...+.+.+.-.  ....+.-|..++-...|+.|.|.+|.+.
T Consensus        84 qkt~~lkl~~~--pa~~pt~pi~ifpF~sLr~LElrg~~L~  122 (1096)
T KOG1859|consen   84 QKTKVLKLLPS--PARDPTEPISIFPFRSLRVLELRGCDLS  122 (1096)
T ss_pred             hhheeeeeccc--CCCCCCCCceeccccceeeEEecCcchh
Confidence            34455554432  2222333777888889999999998754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=90.28  E-value=0.73  Score=39.54  Aligned_cols=28  Identities=21%  Similarity=0.227  Sum_probs=12.9

Q ss_pred             CCCceEEEEEeCCCccCCCchhhhhhhh
Q 041569          251 SSQIERLCIDFSSVETNSEDATLHFLYK  278 (285)
Q Consensus       251 ~~~L~~L~L~~~~~~~~~~~~~f~~L~~  278 (285)
                      .|.++.|.++.+.+...++...+.+|.+
T Consensus       306 ~Pkir~L~lS~N~i~~v~nLa~L~~L~~  333 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTVQNLAELPQLQL  333 (490)
T ss_pred             ccceeEEeccccceeeehhhhhcccceE
Confidence            3555555555555544433333333333

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=90.18  E-value=0.13  Score=48.13  Aligned_cols=39  Identities=23%  Similarity=0.542  Sum_probs=36.5

Q ss_pred             CCCCcCCCCCHHHHHHHhcCCChhhHHhhhhcccchhhc
Q 041569            3 ETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQF   41 (285)
Q Consensus         3 ~~~d~~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~l   41 (285)
                      ...|.++.||-++..+|+++|+.++.+.+++||+.|+.+
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            356899999999999999999999999999999999876

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.45  E-value=0.024  Score=47.76  Aligned_cols=12  Identities=17%  Similarity=0.271  Sum_probs=6.0

Q ss_pred             HhccCCCceEEE
Q 041569          247 FLGASSQIERLC  258 (285)
Q Consensus       247 ~l~~~~~L~~L~  258 (285)
                      .+..+|+|++|+
T Consensus       112 VLR~LPnLkKLD  123 (388)
T KOG2123|consen  112 VLRVLPNLKKLD  123 (388)
T ss_pred             HHHHcccchhcc
Confidence            444555555543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.29  E-value=0.21  Score=25.15  Aligned_cols=22  Identities=27%  Similarity=0.277  Sum_probs=12.4

Q ss_pred             ccccceEEeeeeecChHHHHHH
Q 041569          135 CAHLKKLLLSEFPLNDRELHHL  156 (285)
Q Consensus       135 ~~~L~~L~L~~~~~~~~~l~~l  156 (285)
                      +++|++|+|+++.+++++...+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3566777777777766666554

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.23  E-value=0.082  Score=44.63  Aligned_cols=58  Identities=28%  Similarity=0.330  Sum_probs=41.6

Q ss_pred             CcCCccEEEEcCeeecC--CCccccccceEEeeeeecC-hHHHHHHHhCCCccceeeeecCC
Q 041569          114 SAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLN-DRELHHLISKCPLLEDLSISHCH  172 (285)
Q Consensus       114 ~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~c~  172 (285)
                      ..+.|+.|.|+-+.+..  +...|.+|++|.|..+.+. -..+.. +.+.|+|+.|.|...+
T Consensus        39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENP   99 (388)
T ss_pred             hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCC
Confidence            35778888888877665  3456888888888888773 344544 6678888888887654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=88.09  E-value=0.03  Score=53.15  Aligned_cols=151  Identities=21%  Similarity=0.230  Sum_probs=78.5

Q ss_pred             CCccEEEEcCeeecC-----CCccccccceEEeeeeec-ChHHHHHHHhCCCccceeee-----------ecCCC-c---
Q 041569          116 KLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPL-NDRELHHLISKCPLLEDLSI-----------SHCHS-L---  174 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l-----------~~c~~-~---  174 (285)
                      ++++.|++-...-..     ..+.|..|++|.|.+|.+ +..++..+-   ..||+|.-           ..|.+ +   
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~Sl~Al~~v~ascggd~~ns  160 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHNSLDALRHVFASCGGDISNS  160 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHH---HhhhhhhhhccHHHHHHHHHHhccccccc
Confidence            566666666443222     335799999999999987 333333331   23333311           11210 0   


Q ss_pred             --------------CeEEEcc-----CCcceEEEeecCCCceEE-E-eCCCccEEEEeeCcEeee-----cCCCccccee
Q 041569          175 --------------GRIMISS-----NKLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPIPII-----STNALCPWNV  228 (285)
Q Consensus       175 --------------~~~~i~~-----~~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~~~-----~~~~L~~l~i  228 (285)
                                    .-..++.     +.|++|+++... +..+. + .+|.|++|+++-+.....     .+-.|..+++
T Consensus       161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhhhheeeee
Confidence                          0001111     677777777764 22222 2 677888888776542110     1113555565


Q ss_pred             ccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhe
Q 041569          229 TLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKL  279 (285)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L  279 (285)
                      ..+.+...         .-+.++.+|+.|+++.+-+..-++..++..|..|
T Consensus       240 rnN~l~tL---------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L  281 (1096)
T KOG1859|consen  240 RNNALTTL---------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL  281 (1096)
T ss_pred             cccHHHhh---------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH
Confidence            54322111         2234577888888888777664444444444444

>PLN03150 hypothetical protein; Provisional

Probab=86.87  E-value=0.73  Score=44.19  Aligned_cols=87  Identities=17%  Similarity=0.125  Sum_probs=59.9

Q ss_pred             ccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE--E
Q 041569          106 YALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM--I  179 (285)
Q Consensus       106 ~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~--i  179 (285)
                      ..+|..+..+++|+.|+|++|.+..    ....+++|+.|+|.++.++... -..+..+++|+.|+++++.-...+.  +
T Consensus       432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~Ls~N~l~g~iP~~l  510 (623)
T PLN03150        432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNLNGNSLSGRVPAAL  510 (623)
T ss_pred             ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEECcCCcccccCChHH
Confidence            3567777788999999999998764    2346899999999999885322 2235678999999999885322211  1


Q ss_pred             cc--CCcceEEEeecC
Q 041569          180 SS--NKLEHLLISSCY  193 (285)
Q Consensus       180 ~~--~~L~~L~l~~~~  193 (285)
                      ..  .++..+++.++.
T Consensus       511 ~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        511 GGRLLHRASFNFTDNA  526 (623)
T ss_pred             hhccccCceEEecCCc
Confidence            11  344566666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=81.73  E-value=1.1  Score=22.05  Aligned_cols=14  Identities=36%  Similarity=0.332  Sum_probs=9.5

Q ss_pred             CccEEEEcCeeecC
Q 041569          117 LLTSLKLVGCKLEL  130 (285)
Q Consensus       117 ~L~~L~L~~~~~~~  130 (285)
                      +|+.|+|++|.+..
T Consensus         1 ~L~~Ldls~n~l~~   14 (22)
T PF00560_consen    1 NLEYLDLSGNNLTS   14 (22)
T ss_dssp             TESEEEETSSEESE
T ss_pred             CccEEECCCCcCEe
Confidence            46777777776553

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13013 F-box-like_2: F-box-like domain

Probab=81.59  E-value=0.97  Score=32.63  Aligned_cols=30  Identities=20%  Similarity=0.260  Sum_probs=25.5

Q ss_pred             cCCCCCHHHHHHHhcCCChhhHHhhhhccc
Q 041569            7 QISDLPPSIIHHIMTYLSAKEVTRTSILST   36 (285)
Q Consensus         7 ~~~~LP~~il~~I~s~L~~~~~~~~~~vsk   36 (285)
                      .+.+||+||+..||.+-+..+.......|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            367899999999999999988877766665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 34/201 (16%), Positives = 69/201 (34%), Gaps = 15/201 (7%)

Query: 8   ISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFP---ILDFDLMNFIVRIEIKLR 64
              LP  ++  I + L   E+ + S +   W +  +       LD    N    +  +L 
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLL 68

Query: 65  IYVCPLDVEGSSPLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLV 124
                      S +     E  +   ++ +D            L   +     L +L L 
Sbjct: 69  SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS--NSVIEVSTLHGILSQCSKLQNLSLE 126

Query: 125 GCKLELPSFT----CAHLKKLLLSEFP-LNDRELHHLISKCPLLEDLSISHCHSLGRIMI 179
           G +L  P        ++L +L LS     ++  L  L+S C  L++L++S C        
Sbjct: 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD-----F 181

Query: 180 SSNKLEHLLISSCYGLNALDV 200
           +   ++  +      +  L++
Sbjct: 182 TEKHVQVAVAHVSETITQLNL 202

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 13/93 (13%)

Query: 116 KLLTSLKLVGCK-------LELPSFTCAHLKKLLLSEFP--LNDRELHHLISKCPLLEDL 166
             L  L L  C            +     + +L LS +   L   +L  L+ +CP L  L
Sbjct: 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227

Query: 167 SISHCHSLG----RIMISSNKLEHLLISSCYGL 195
            +S    L     +     N L+HL +S CY +
Sbjct: 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 54/307 (17%), Positives = 103/307 (33%), Gaps = 49/307 (15%)

Query: 6   DQISDLPPSIIHHIMTYL-SAKEVTRTSILSTSWNQ----------FQNSFPILDFDLMN 54
                 P  ++ H+ +++   K+    S++  SW +            N + +    ++ 
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIR 63

Query: 55  FIVRIEIKLRIYVCP------LDVEGSSPLFDKWIELATEN--GLEVLDF--MVIADENT 104
              ++   + +   P      L  +G       WIE  + +   LE +    MV+ D+  
Sbjct: 64  RFPKVR-SVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD-- 120

Query: 105 YYALPQTIFSAKLLTSLKLVGCK------LELPSFTCAHLKKLLLSEFPLNDRE---LHH 155
              L     S K    L L  C+      L   + TC +LK+L L E  ++D     L H
Sbjct: 121 --CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178

Query: 156 LISKCPLLEDLSISHCH------SLGRIMISSNKLEHLLISSCYGLNALDVDAPR----- 204
                  L  L+IS         +L R++     L+ L ++    L  L     R     
Sbjct: 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLE 238

Query: 205 ---LLSFIFDLNPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDF 261
                 +  ++ P      +        L C S         L       S++  L + +
Sbjct: 239 ELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY 298

Query: 262 SSVETNS 268
           ++V++  
Sbjct: 299 ATVQSYD 305

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 114 SAKLLTSLKLVGCK----LELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSIS 169
             K L  L L G       E        ++ L ++    +D  +HH++S C  L  L I 
Sbjct: 430 HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489

Query: 170 HCH----SLGRIMISSNKLEHLLISSC 192
            C     +L         +  L +SSC
Sbjct: 490 DCPFGDKALLANASKLETMRSLWMSSC 516

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 9/108 (8%)

Query: 107 ALPQTIFSAKLLTSLKLVGCK------LELPSFTCAHLKKLLLSEFPLNDRELHHLISKC 160
            +P+   +      L  +G        + +     A ++KL L    L   +   LI KC
Sbjct: 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC 317

Query: 161 PLLEDLSISHC---HSLGRIMISSNKLEHLLISSCYGLNALDVDAPRL 205
           P LE L   +      L  +     +L+ L I        ++ +   +
Sbjct: 318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 53/313 (16%), Positives = 93/313 (29%), Gaps = 44/313 (14%)

Query: 8   ISDLPPSIIHHIMTYL-SAKEVTRTSILSTSWNQ----------FQNSFPILDFDLMNFI 56
                  +I  +MTY+   K+    S++   W +              +      L    
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRF 72

Query: 57  VRIEIKLRIYVCP------LDVEGSSPLFDKWIELATEN--GLEVLDF--MVIADENTYY 106
             +   L++   P      L  E        W+   + N   L+ + F  M+++D +   
Sbjct: 73  PNLR-SLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR 131

Query: 107 ALPQTIFSAKLLTSLKLVGCK------LELPSFTCAHLKKLLLSEFPLND---RELHHLI 157
                   A  L +LKL  C       L      C  +K LL+ E   ++   + LH L 
Sbjct: 132 LAKA---RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188

Query: 158 SKCPLLEDLSISHCH-------SLGRIMISSNKLEHLLISSCYGLN--ALDVDAPRLLSF 208
                LE L+             L  I  +   L  + +     L        A  L  F
Sbjct: 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248

Query: 209 -IFDLNPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETN 267
               LN    +    +        C   L       +      ++QI +L + ++ +ET 
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308

Query: 268 SEDATLHFLYKLR 280
                +     L 
Sbjct: 309 DHCTLIQKCPNLE 321

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 135 CAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC----HSLGRIMISSNKLEHLLIS 190
             +++ +LL     +D  L      CP L+ L +  C     ++   +     L +L + 
Sbjct: 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521

Query: 191 SC 192
             
Sbjct: 522 GY 523

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 50/319 (15%), Positives = 100/319 (31%), Gaps = 79/319 (24%)

Query: 17  HHIMTYLSAKEVTRTSILSTSWNQFQNSFPILDFD-------LMNFIVRIEIKLRIYVCP 69
           HH+       +     ILS     F+++F + +FD         + + + EI   I +  
Sbjct: 5   HHMDFETGEHQYQYKDILSV----FEDAF-VDNFDCKDVQDMPKSILSKEEID-HIIMSK 58

Query: 70  LDVEGSSPLFDKWIELATENGLEVL---------DFMV--IADENTYYALPQTIFSA--- 115
             V G+  LF   +    E  ++            F++  I  E    ++   ++     
Sbjct: 59  DAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 116 KLLTSLKLVGCKLELPSFTCAH-LKKLLLSEFPLNDRELHHL--ISKCPL----LED--- 165
           +L    ++   K  +        L++ LL   P  +  +  +    K  +          
Sbjct: 118 RLYNDNQVFA-KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 166 ----------LSISHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRL--------LS 207
                     L++ +C+S   ++    KL +  I   +   +      +L        L 
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 208 FIFDLNPIPIISTNALCPWNVTLD--CDS------NLDCDWFL-----SLKEFLGASSQI 254
            +    P      N L    + L    ++      NL C   L      + +FL A++  
Sbjct: 236 RLLKSKPYE----NCL----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 255 ERLCIDFSSVETNSEDATL 273
                  S   T  E  +L
Sbjct: 288 HISLDHHSMTLTPDEVKSL 306

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.77
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.75
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.06
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.01
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.83
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.82
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.78
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.77
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.75
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.73
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.71
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.7
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.69
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.69
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.69
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.66
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.66
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.63
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.62
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.62
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.62
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.62
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.6
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.59
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.59
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.58
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.58
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.58
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.57
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.56
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.56
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.54
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.54
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.54
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.53
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.53
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.52
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.49
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.49
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.48
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.46
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.46
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.44
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.43
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.43
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.42
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.41
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.39
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.39
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.38
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.38
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.36
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.35
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.35
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.35
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.34
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.34
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.33
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.31
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.31
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.29
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.28
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.24
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.23
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.2
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.2
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.19
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.14
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.12
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.02
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.99
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.95
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.95
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.95
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.9
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.72
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.7
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.68
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.67
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.51
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.39
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.36
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.36
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.34
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.33
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.23
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.13
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.13
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.91
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.83
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.83
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.8
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.75
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	95.85
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.71
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.74
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.63
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	91.93
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	91.84
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	89.87

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=1.2e-20  Score=164.15  Aligned_cols=245  Identities=16%  Similarity=0.190  Sum_probs=132.9

Q ss_pred             CCCcCCCCCHHHHHHHhcCCChhhHHhhhhcccchhhcccc---cceeeEecccccccccc---ccccccccccc---CC
Q 041569            4 TVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNS---FPILDFDLMNFIVRIEI---KLRIYVCPLDV---EG   74 (285)
Q Consensus         4 ~~d~~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~lw~~---~~~l~~~~~~~~~~v~~---~~~l~~~~~~~---~~   74 (285)
                      +...|+.||+|++.+||+||+.+|+++++.|||+|+.+...   ...++++...+.+..-.   ...++.+....   ..
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~   84 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQ   84 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECS
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCccccc
Confidence            44668999999999999999999999999999999998422   11233333221111000   00011110000   00


Q ss_pred             ChhHHHHHHHHHHHCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeee-ecC
Q 041569           75 SSPLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEF-PLN  149 (285)
Q Consensus        75 ~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~-~~~  149 (285)
                      ....      ....+++++++++.  +......++..+..+++|++|++++|.+..    ....+++|++|++.++ .++
T Consensus        85 ~~~~------~~~~~~L~~L~L~~--~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~  156 (336)
T 2ast_B           85 PLAE------HFSPFRVQHMDLSN--SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS  156 (336)
T ss_dssp             CCCS------CCCCBCCCEEECTT--CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred             cchh------hccCCCCCEEEccC--CCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            0000      00113455555543  221222244445556777777777776543    1224677777777777 566


Q ss_pred             hHHHHHHHhCCCccceeeeecCCCcCeEEEc-----cC-CcceEEEeecC-CCc-----eEEEeCCCccEEEEeeCc-Ee
Q 041569          150 DRELHHLISKCPLLEDLSISHCHSLGRIMIS-----SN-KLEHLLISSCY-GLN-----ALDVDAPRLLSFIFDLNP-IP  216 (285)
Q Consensus       150 ~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~-----~~-~L~~L~l~~~~-~~~-----~~~~~~p~L~~l~~~~~~-~~  216 (285)
                      +..+..++..||+|++|++++|..++...+.     .+ +|++|++.+|. .+.     .....+|+|++|++.++. +.
T Consensus       157 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~  236 (336)
T 2ast_B          157 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK  236 (336)
T ss_dssp             HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred             HHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence            6666666777777777777777444432111     15 77777777763 121     111246777777777665 21


Q ss_pred             ------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeC
Q 041569          217 ------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFS  262 (285)
Q Consensus       217 ------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~  262 (285)
                            +...++|+++++....  .......    ..+..+++|+.|+++..
T Consensus       237 ~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~----~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          237 NDCFQEFFQLNYLQHLSLSRCY--DIIPETL----LELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGGGGGCTTCCEEECTTCT--TCCGGGG----GGGGGCTTCCEEECTTS
T ss_pred             HHHHHHHhCCCCCCEeeCCCCC--CCCHHHH----HHHhcCCCCCEEeccCc
Confidence                  2233567766665432  1111110    23456778888777644

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.77  E-value=5.7e-19  Score=164.70  Aligned_cols=143  Identities=20%  Similarity=0.239  Sum_probs=73.7

Q ss_pred             CCCcCCCCCHHHHHHHhcCCC-hhhHHhhhhcccchhhccc-ccceeeEeccccccc---ccccccccccccc-------
Q 041569            4 TVDQISDLPPSIIHHIMTYLS-AKEVTRTSILSTSWNQFQN-SFPILDFDLMNFIVR---IEIKLRIYVCPLD-------   71 (285)
Q Consensus         4 ~~d~~~~LP~~il~~I~s~L~-~~~~~~~~~vskrWr~lw~-~~~~l~~~~~~~~~~---v~~~~~l~~~~~~-------   71 (285)
                      +.|+|+.|||||+.+||+||+ .+|+++++.|||||+++.. ....+.+........   +..-..++.....       
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~   81 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD   81 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence            358999999999999999999 9999999999999998711 111223322111100   0000001111100       


Q ss_pred             ----cCCChhHHHHHHHHHH--HCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCe-eecC-----CCccccccc
Q 041569           72 ----VEGSSPLFDKWIELAT--ENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGC-KLEL-----PSFTCAHLK  139 (285)
Q Consensus        72 ----~~~~~~~~~~~l~~~~--~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~-----~~~~~~~L~  139 (285)
                          .......+..|+....  .+++++++++.  +......+......+++|++|+|++| .+..     ....+++|+
T Consensus        82 ~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~--~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~  159 (594)
T 2p1m_B           82 FNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKR--MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK  159 (594)
T ss_dssp             GTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEES--CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCC
T ss_pred             cccccccccchhhHHHHHHHHhCCCCCeEEeeC--cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCC
Confidence                0011133455666543  25788888876  22222222222224788888888888 3332     122567777


Q ss_pred             eEEeeeeec
Q 041569          140 KLLLSEFPL  148 (285)
Q Consensus       140 ~L~L~~~~~  148 (285)
                      +|+|.++.+
T Consensus       160 ~L~L~~~~i  168 (594)
T 2p1m_B          160 ELDLRESDV  168 (594)
T ss_dssp             EEECTTCEE
T ss_pred             EEeCcCCcc
Confidence            777776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.75  E-value=9.3e-19  Score=163.26  Aligned_cols=169  Identities=14%  Similarity=0.158  Sum_probs=90.5

Q ss_pred             CCCCcCC----CCCHHHHHHHhcCC-ChhhHHhhhhcccchhhcccccce-eeEecc--ccccccc-cccccccccc---
Q 041569            3 ETVDQIS----DLPPSIIHHIMTYL-SAKEVTRTSILSTSWNQFQNSFPI-LDFDLM--NFIVRIE-IKLRIYVCPL---   70 (285)
Q Consensus         3 ~~~d~~~----~LP~~il~~I~s~L-~~~~~~~~~~vskrWr~lw~~~~~-l~~~~~--~~~~~v~-~~~~l~~~~~---   70 (285)
                      ++.|+++    .||||++.+||+|| +.+|+++++.|||||++++..... +.+...  .+...+- .-..++.+..   
T Consensus         4 ~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~   83 (592)
T 3ogk_B            4 PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGK   83 (592)
T ss_dssp             --------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECS
T ss_pred             hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCC
Confidence            4567777    89999999999999 899999999999999988422211 111110  0000000 0000111000   


Q ss_pred             ------------------------------------ccCCChhHHHHHHHHHHHCCCceEEEEeeeCCCccccCCccccC
Q 041569           71 ------------------------------------DVEGSSPLFDKWIELATENGLEVLDFMVIADENTYYALPQTIFS  114 (285)
Q Consensus        71 ------------------------------------~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~  114 (285)
                                                          ....-....-.++......++++|++..+. ......++.....
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~-~~~~~~l~~~~~~  162 (592)
T 3ogk_B           84 PRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS-GFTTDGLLSIVTH  162 (592)
T ss_dssp             CGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE-EEEHHHHHHHHHH
T ss_pred             cchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC-CcCHHHHHHHHhh
Confidence                                                000011112222333222346666665421 0112223333335


Q ss_pred             cCCccEEEEcCeeecC--------CCccccccceEEeeeeecC---hHHHHHHHhCCCccceeeeecCC
Q 041569          115 AKLLTSLKLVGCKLEL--------PSFTCAHLKKLLLSEFPLN---DRELHHLISKCPLLEDLSISHCH  172 (285)
Q Consensus       115 ~~~L~~L~L~~~~~~~--------~~~~~~~L~~L~L~~~~~~---~~~l~~l~~~cp~Le~L~l~~c~  172 (285)
                      |++|++|+|++|.+..        ....+++|++|++.++.++   ...+..++..||+|++|++.+|.
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            6788888888876543        1235778888888777653   57777778888888888888874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.15  E-value=1.3e-12  Score=113.14  Aligned_cols=169  Identities=14%  Similarity=0.164  Sum_probs=90.0

Q ss_pred             HHHHHHCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-----CCccccccceEEeeeeecChHHHHHHH
Q 041569           83 IELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPLNDRELHHLI  157 (285)
Q Consensus        83 l~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l~  157 (285)
                      +.....++++.+++...    .....+...+.+++|++|++++|.+..     ....+++|++|+|.++.+++..... +
T Consensus        64 ~~~~~~~~l~~L~l~~n----~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l  138 (336)
T 2ast_B           64 TGRLLSQGVIAFRCPRS----FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-L  138 (336)
T ss_dssp             HHHHHHTTCSEEECTTC----EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-H
T ss_pred             HHhhhhccceEEEcCCc----cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-H
Confidence            33334456666665431    111222334556777777777776542     2235677777777777666555544 3


Q ss_pred             hCCCccceeeeecCCCcCeEEEc-----cCCcceEEEeecCCCce-----EEEeCC-CccEEEEeeCc--Ee-------e
Q 041569          158 SKCPLLEDLSISHCHSLGRIMIS-----SNKLEHLLISSCYGLNA-----LDVDAP-RLLSFIFDLNP--IP-------I  217 (285)
Q Consensus       158 ~~cp~Le~L~l~~c~~~~~~~i~-----~~~L~~L~l~~~~~~~~-----~~~~~p-~L~~l~~~~~~--~~-------~  217 (285)
                      ..|++|++|++++|..++...+.     .++|++|++.+|..+..     .....| +|++|++.++.  +.       +
T Consensus       139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~  218 (336)
T 2ast_B          139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV  218 (336)
T ss_dssp             TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred             hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence            45777777777777544432111     16777777777732221     112456 77777777662  11       1


Q ss_pred             ecCCCcccceecccc-CCCCChhhHHHHHHHhccCCCceEEEEEeCC
Q 041569          218 ISTNALCPWNVTLDC-DSNLDCDWFLSLKEFLGASSQIERLCIDFSS  263 (285)
Q Consensus       218 ~~~~~L~~l~i~~~~-~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~  263 (285)
                      ...++|++++++... +.....       ..+..+++|+.|+++.+.
T Consensus       219 ~~~~~L~~L~l~~~~~l~~~~~-------~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          219 RRCPNLVHLDLSDSVMLKNDCF-------QEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGG-------GGGGGCTTCCEEECTTCT
T ss_pred             hhCCCCCEEeCCCCCcCCHHHH-------HHHhCCCCCCEeeCCCCC
Confidence            234566666665432 211111       234556777777775553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.06  E-value=2.9e-10  Score=98.31  Aligned_cols=141  Identities=22%  Similarity=0.236  Sum_probs=88.8

Q ss_pred             HHHHHHCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhC
Q 041569           83 IELATENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISK  159 (285)
Q Consensus        83 l~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~  159 (285)
                      +..+...+++.+++..  ..  ...+|..++.+++|++|+|++|.+..   ....+++|++|+|.++.++  .+-..+..
T Consensus        75 l~~~~~~~l~~L~L~~--n~--l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~  148 (328)
T 4fcg_A           75 LEDATQPGRVALELRS--VP--LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIAS  148 (328)
T ss_dssp             HHHHTSTTCCEEEEES--SC--CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGG
T ss_pred             HhcccccceeEEEccC--CC--chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhc
Confidence            3333446888888876  22  23677777888889999998887665   2346888899999888774  22233667


Q ss_pred             CCccceeeeecCCCcCeEE-----------Ec-cCCcceEEEeecCCCceEE--E-eCCCccEEEEeeCcEe-----eec
Q 041569          160 CPLLEDLSISHCHSLGRIM-----------IS-SNKLEHLLISSCYGLNALD--V-DAPRLLSFIFDLNPIP-----IIS  219 (285)
Q Consensus       160 cp~Le~L~l~~c~~~~~~~-----------i~-~~~L~~L~l~~~~~~~~~~--~-~~p~L~~l~~~~~~~~-----~~~  219 (285)
                      +++|+.|++++|...+.+.           +. .++|+.|++.++. +..+.  + ..++|++|++.++.+.     +..
T Consensus       149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~  227 (328)
T 4fcg_A          149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHH  227 (328)
T ss_dssp             CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred             CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence            8888888888875443221           11 2677777777774 22222  1 3566777777666522     122


Q ss_pred             CCCcccceecc
Q 041569          220 TNALCPWNVTL  230 (285)
Q Consensus       220 ~~~L~~l~i~~  230 (285)
                      .++|+.++++.
T Consensus       228 l~~L~~L~Ls~  238 (328)
T 4fcg_A          228 LPKLEELDLRG  238 (328)
T ss_dssp             CTTCCEEECTT
T ss_pred             CCCCCEEECcC
Confidence            34555555554

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.01  E-value=1.5e-10  Score=72.13  Aligned_cols=40  Identities=18%  Similarity=0.286  Sum_probs=33.6

Q ss_pred             CCCCcCCCCCHHHHHHHhcCCChhhHHhhhhcccchhhcc
Q 041569            3 ETVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQ   42 (285)
Q Consensus         3 ~~~d~~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~lw   42 (285)
                      ...+.++.||+|++.+||+||+.+|+++++.|||+|+.+.
T Consensus         4 ~~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             -----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            3457799999999999999999999999999999999873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.88  E-value=1.5e-09  Score=84.70  Aligned_cols=91  Identities=16%  Similarity=0.182  Sum_probs=68.3

Q ss_pred             ccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeee-ecChHHHHHHHhC---CCccceeeeecCCCcC
Q 041569          104 TYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEF-PLNDRELHHLISK---CPLLEDLSISHCHSLG  175 (285)
Q Consensus       104 ~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~---cp~Le~L~l~~c~~~~  175 (285)
                      +...+|..-.....|++|++++|.+..    ...+|++|++|+|++| .++|.++..+...   |++|++|++++|..++
T Consensus        49 ~~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           49 DYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CGGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ccccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            344566544445689999999998765    2247999999999999 4799999998763   7899999999999887


Q ss_pred             eEEEcc----CCcceEEEeecCC
Q 041569          176 RIMISS----NKLEHLLISSCYG  194 (285)
Q Consensus       176 ~~~i~~----~~L~~L~l~~~~~  194 (285)
                      +-.+.+    ++|++|++.+|+.
T Consensus       129 D~Gl~~L~~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A          129 DKGIIALHHFRNLKYLFLSDLPG  151 (176)
T ss_dssp             HHHHHHGGGCTTCCEEEEESCTT
T ss_pred             HHHHHHHhcCCCCCEEECCCCCC
Confidence            644432    6666666666653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.86  E-value=1.1e-09  Score=98.79  Aligned_cols=168  Identities=16%  Similarity=0.151  Sum_probs=103.9

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE  164 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  164 (285)
                      ++++.|+++.  .... ...+..+..+++|++|+|++|.+..    ....+++|++|+|.++.++.-. ...+..+++|+
T Consensus        99 ~~L~~L~Ls~--n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~  174 (452)
T 3zyi_A           99 HHLEVLQLGR--NSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLM  174 (452)
T ss_dssp             TTCCEEECCS--SCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC-TTTTTTCTTCC
T ss_pred             CCCCEEECCC--CccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC-HhHHhcCCccc
Confidence            4567776654  2111 1122344457888888888887655    1235788888888888663211 12245678888


Q ss_pred             eeeeecCCCcCeEEEcc----CCcceEEEeecCCCceEE-E-eCCCccEEEEeeCcEe------eecCCCcccceecccc
Q 041569          165 DLSISHCHSLGRIMISS----NKLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDC  232 (285)
Q Consensus       165 ~L~l~~c~~~~~~~i~~----~~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~  232 (285)
                      .|++++|..++.+....    ++|+.|+++++. +..+. + ..++|+.|+++++.+.      +...++|+.+++....
T Consensus       175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  253 (452)
T 3zyi_A          175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ  253 (452)
T ss_dssp             EEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred             EEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence            88888877666554321    678888888875 22222 2 4578888888877632      2234577777776655


Q ss_pred             CCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCC
Q 041569          233 DSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNS  268 (285)
Q Consensus       233 ~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~  268 (285)
                      +.....       ..+..+++|+.|+|+.+.+...+
T Consensus       254 l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~~  282 (452)
T 3zyi_A          254 VSLIER-------NAFDGLASLVELNLAHNNLSSLP  282 (452)
T ss_dssp             CCEECT-------TTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CceECH-------HHhcCCCCCCEEECCCCcCCccC
Confidence            444333       33566788888888877776543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.85  E-value=1.1e-09  Score=98.49  Aligned_cols=166  Identities=14%  Similarity=0.164  Sum_probs=99.3

Q ss_pred             CCCceEEEEeeeCCCccccCC-ccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALP-QTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      ++++.|+++.  ..  ...++ ..+..+++|++|+|++|.+..    ....+++|++|+|.++.++.-. ...+..+++|
T Consensus        88 ~~L~~L~Ls~--n~--i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L  162 (440)
T 3zyj_A           88 RHLEILQLSR--NH--IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSL  162 (440)
T ss_dssp             SSCCEEECCS--SC--CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTC
T ss_pred             CCCCEEECCC--Cc--CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC-HHHhhhCccc
Confidence            4566666654  21  11222 334457888888888887655    1245788888888887663211 1124567888


Q ss_pred             ceeeeecCCCcCeEEEcc----CCcceEEEeecCCCceEE-E-eCCCccEEEEeeCcEee------ecCCCcccceeccc
Q 041569          164 EDLSISHCHSLGRIMISS----NKLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPIPI------ISTNALCPWNVTLD  231 (285)
Q Consensus       164 e~L~l~~c~~~~~~~i~~----~~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~~------~~~~~L~~l~i~~~  231 (285)
                      +.|++++|..++.+....    ++|+.|++.++. +..+. + ..++|++|+++++.+..      ...++|+.+++...
T Consensus       163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence            888888876665543321    678888888774 33222 2 45678888887776321      22346677776654


Q ss_pred             cCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccC
Q 041569          232 CDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETN  267 (285)
Q Consensus       232 ~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~  267 (285)
                      .+.....       ..+..+++|+.|+|+.+.+...
T Consensus       242 ~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          242 QIQVIER-------NAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             CCCEECT-------TSSTTCTTCCEEECTTSCCCCC
T ss_pred             ceeEECh-------hhhcCCCCCCEEECCCCCCCcc
Confidence            4443332       2345677777777777666653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.83  E-value=2e-09  Score=93.37  Aligned_cols=76  Identities=17%  Similarity=0.171  Sum_probs=39.2

Q ss_pred             CCcceEEEeecCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCce
Q 041569          182 NKLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIE  255 (285)
Q Consensus       182 ~~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~  255 (285)
                      ++|++|++.+|. +..+. + ..++|+.+.+.++.+.    +...++|++++++...+...+.         +..+++|+
T Consensus       177 ~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~---------~~~l~~L~  246 (347)
T 4fmz_A          177 TDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP---------LANLSQLT  246 (347)
T ss_dssp             TTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---------GTTCTTCC
T ss_pred             CCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc---------hhcCCCCC
Confidence            455555555553 11111 1 3455555555554421    2233466666665544333221         56678888


Q ss_pred             EEEEEeCCCccC
Q 041569          256 RLCIDFSSVETN  267 (285)
Q Consensus       256 ~L~L~~~~~~~~  267 (285)
                      .|+++.+.....
T Consensus       247 ~L~l~~n~l~~~  258 (347)
T 4fmz_A          247 WLEIGTNQISDI  258 (347)
T ss_dssp             EEECCSSCCCCC
T ss_pred             EEECCCCccCCC
Confidence            888877766554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.83  E-value=3e-09  Score=91.09  Aligned_cols=140  Identities=18%  Similarity=0.200  Sum_probs=69.4

Q ss_pred             ccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-Ecc-CCcceE
Q 041569          112 IFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-ISS-NKLEHL  187 (285)
Q Consensus       112 ~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~-~~L~~L  187 (285)
                      +..+++|+.|++++|.+..  ....+++|++|+++++.+++-.  . +..+++|++|++++|. ++.+. +.. ++|+.|
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L  156 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYL  156 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEE
T ss_pred             HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCch--h-hcCCCCCCEEECCCCc-cCcCccccCCCCccEE
Confidence            3445566666666655443  2234556666666666553211  1 4456666666666553 11111 222 566666


Q ss_pred             EEeecCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEe
Q 041569          188 LISSCYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDF  261 (285)
Q Consensus       188 ~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  261 (285)
                      ++.+|. +..+. + ..++|+.|+++++.+.    +...++|++++++...+.....         +..+++|+.|+++.
T Consensus       157 ~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---------l~~l~~L~~L~l~~  226 (308)
T 1h6u_A          157 SIGNAQ-VSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP---------LANTSNLFIVTLTN  226 (308)
T ss_dssp             ECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG---------GTTCTTCCEEEEEE
T ss_pred             EccCCc-CCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc---------ccCCCCCCEEEccC
Confidence            666663 21111 2 3466666666665521    2233456666665544332221         35566666666665


Q ss_pred             CCCc
Q 041569          262 SSVE  265 (285)
Q Consensus       262 ~~~~  265 (285)
                      +...
T Consensus       227 N~i~  230 (308)
T 1h6u_A          227 QTIT  230 (308)
T ss_dssp             EEEE
T ss_pred             Ceee
Confidence            5543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.82  E-value=2.6e-09  Score=92.70  Aligned_cols=142  Identities=18%  Similarity=0.165  Sum_probs=72.8

Q ss_pred             cCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc-CCcceEEEee
Q 041569          115 AKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLLISS  191 (285)
Q Consensus       115 ~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~-~~L~~L~l~~  191 (285)
                      +++|+.|++++|.+..  ....+++|+.|.+.++.+++..-   +..+++|++|++++|.-.....+.. ++|+.|++.+
T Consensus       176 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~  252 (347)
T 4fmz_A          176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGT  252 (347)
T ss_dssp             CTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCC
Confidence            3444444444443332  12234445555555444422111   4456666666666653111111222 6677777766


Q ss_pred             cCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          192 CYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       192 ~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      |. +..+. + ..|+|++|+++++.+.    +...++|+.++++...+.....       ..+..+++|+.|+++.+...
T Consensus       253 n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          253 NQ-ISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM-------EVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             SC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGH-------HHHHTCTTCSEEECCSSSCC
T ss_pred             Cc-cCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcCh-------hHhhccccCCEEEccCCccc
Confidence            64 22222 1 3567777777776532    2233567777766544432222       45667888998888887776


Q ss_pred             cC
Q 041569          266 TN  267 (285)
Q Consensus       266 ~~  267 (285)
                      ..
T Consensus       325 ~~  326 (347)
T 4fmz_A          325 DI  326 (347)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.82  E-value=3.8e-09  Score=91.26  Aligned_cols=177  Identities=16%  Similarity=0.082  Sum_probs=104.4

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHH---H-----HHHH
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRE---L-----HHLI  157 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~---l-----~~l~  157 (285)
                      ++++.++++.  ....  .+|..+..+++|++|+|++|.+..   ....+++|++|++.++.+....   +     ...+
T Consensus       104 ~~L~~L~L~~--n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          104 SHLQHMTIDA--AGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             TTCSEEEEES--SCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             CCCCEEECCC--CCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            5688888776  3222  667777778888888888887655   2235788888888887442110   0     0012


Q ss_pred             hCCCccceeeeecCCCcCeEE--Ecc-CCcceEEEeecCCCceEE--E-eCCCccEEEEeeCcE------eeecCCCccc
Q 041569          158 SKCPLLEDLSISHCHSLGRIM--ISS-NKLEHLLISSCYGLNALD--V-DAPRLLSFIFDLNPI------PIISTNALCP  225 (285)
Q Consensus       158 ~~cp~Le~L~l~~c~~~~~~~--i~~-~~L~~L~l~~~~~~~~~~--~-~~p~L~~l~~~~~~~------~~~~~~~L~~  225 (285)
                      ..+++|++|++++|. ++.+.  +.. ++|+.|++.+|. +..+.  + ..|+|++|+++++..      .+...++|+.
T Consensus       180 ~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  257 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR  257 (328)
T ss_dssp             EESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred             ccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence            347888888888774 33221  111 678888888875 22221  2 467888888887551      1223457777


Q ss_pred             ceecccc-CCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc-CCCchhhhhhhheee
Q 041569          226 WNVTLDC-DSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET-NSEDATLHFLYKLRL  281 (285)
Q Consensus       226 l~i~~~~-~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~-~~~~~~f~~L~~L~l  281 (285)
                      +++.... .+..+.        .+..+++|+.|+|+.+.... .+.  .+.+|++|+.
T Consensus       258 L~L~~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~  305 (328)
T 4fcg_A          258 LILKDCSNLLTLPL--------DIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCI  305 (328)
T ss_dssp             EECTTCTTCCBCCT--------TGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCE
T ss_pred             EECCCCCchhhcch--------hhhcCCCCCEEeCCCCCchhhccH--HHhhccCceE
Confidence            7776532 222222        24667888888887655433 222  2445555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.79  E-value=6e-09  Score=94.16  Aligned_cols=140  Identities=17%  Similarity=0.131  Sum_probs=82.4

Q ss_pred             ccCcCCccEEEEcCeeecC-CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc-CCcceEEE
Q 041569          112 IFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLLI  189 (285)
Q Consensus       112 ~~~~~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~-~~L~~L~l  189 (285)
                      +..+++|+.|++++|.+.. ....+++|++|++.++.++.-.    +..+++|++|++++|..++.+.+.. ++|+.|++
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l  177 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC  177 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred             cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence            3456677777777766554 3345677777777777664321    4566777777777765454443333 67777777


Q ss_pred             eecCCCceEEE-eCCCccEEEEeeCcE---eeecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          190 SSCYGLNALDV-DAPRLLSFIFDLNPI---PIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       190 ~~~~~~~~~~~-~~p~L~~l~~~~~~~---~~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      .++. +..+.+ ..++|+.|.+.++.+   ++...++|+.++++...+...+          +..+++|+.|+++.+...
T Consensus       178 s~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip----------~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          178 SFNK-ITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID----------VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             CSSC-CCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC----------CTTCTTCSEEECCSSCCS
T ss_pred             CCCc-cceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC----------ccccCCCCEEEeeCCcCC
Confidence            7763 333334 456677777766652   2334456666666654443322          345667777777666555


Q ss_pred             c
Q 041569          266 T  266 (285)
Q Consensus       266 ~  266 (285)
                      .
T Consensus       247 ~  247 (457)
T 3bz5_A          247 E  247 (457)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.78  E-value=4e-09  Score=95.07  Aligned_cols=167  Identities=14%  Similarity=0.037  Sum_probs=116.1

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE  164 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  164 (285)
                      ++++.|++..  .... ...+..+..+++|+.|+|++|.+..    ....+++|++|+|.++.++.-. ...+..+++|+
T Consensus        75 ~~l~~L~L~~--n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  150 (452)
T 3zyi_A           75 SNTRYLNLME--NNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLR  150 (452)
T ss_dssp             TTCSEEECCS--SCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCC
T ss_pred             CCccEEECcC--CcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCC
Confidence            4678887765  2211 1223445568999999999997755    2346899999999999774211 12245789999


Q ss_pred             eeeeecCCCcCeEEEc---c-CCcceEEEeecCCCceEEE----eCCCccEEEEeeCcEe----eecCCCcccceecccc
Q 041569          165 DLSISHCHSLGRIMIS---S-NKLEHLLISSCYGLNALDV----DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDC  232 (285)
Q Consensus       165 ~L~l~~c~~~~~~~i~---~-~~L~~L~l~~~~~~~~~~~----~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~  232 (285)
                      +|+++++. ++.+...   . ++|+.|++.+|..+..+..    ..++|++|+++++.+.    +...++|+.++++.+.
T Consensus       151 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          151 ELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC
T ss_pred             EEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc
Confidence            99999885 4433221   1 8999999999876666542    4689999999988732    2334578888888766


Q ss_pred             CCCCChhhHHHHHHHhccCCCceEEEEEeCCCccC
Q 041569          233 DSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETN  267 (285)
Q Consensus       233 ~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~  267 (285)
                      +.....       ..+..+++|+.|+|+.+.....
T Consensus       230 l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~  257 (452)
T 3zyi_A          230 FPEIRP-------GSFHGLSSLKKLWVMNSQVSLI  257 (452)
T ss_dssp             CSEECG-------GGGTTCTTCCEEECTTSCCCEE
T ss_pred             CcccCc-------ccccCccCCCEEEeCCCcCceE
Confidence            554433       3467789999999988877653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.78  E-value=2.8e-09  Score=99.01  Aligned_cols=83  Identities=19%  Similarity=0.232  Sum_probs=62.3

Q ss_pred             HCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--------CCccccccceEEeeeee--cChHHHHHHH
Q 041569           88 ENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--------PSFTCAHLKKLLLSEFP--LNDRELHHLI  157 (285)
Q Consensus        88 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--------~~~~~~~L~~L~L~~~~--~~~~~l~~l~  157 (285)
                      .+++++|++..+. ......++.....|++|++|++++|.+..        ....+++|++|++.++.  +++..+..+.
T Consensus       129 ~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~  207 (594)
T 2p1m_B          129 FKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV  207 (594)
T ss_dssp             CTTCCEEEEESCE-EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred             CCCCcEEeCCCcC-CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence            4789999998631 22223344444568999999999998653        22367899999999885  6788888888


Q ss_pred             hCCCccceeeeecC
Q 041569          158 SKCPLLEDLSISHC  171 (285)
Q Consensus       158 ~~cp~Le~L~l~~c  171 (285)
                      ..||+|+.|++.+|
T Consensus       208 ~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          208 TRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHCTTCCEEECCTT
T ss_pred             HhCCCCcEEecCCC
Confidence            88999999999887

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.78  E-value=7.2e-09  Score=93.66  Aligned_cols=159  Identities=23%  Similarity=0.179  Sum_probs=99.2

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-CCccccccceEEeeeeecChHHHHHHHhCCCccceee
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLS  167 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  167 (285)
                      ++++.++++.  .....  ++  +..+++|+.|++++|.+.. ....+++|++|++.++.++.-.    +..+++|++|+
T Consensus        64 ~~L~~L~Ls~--n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~  133 (457)
T 3bz5_A           64 TGLTKLICTS--NNITT--LD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLN  133 (457)
T ss_dssp             TTCSEEECCS--SCCSC--CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEE
T ss_pred             CCCCEEEccC--CcCCe--Ec--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec----CCCCCcCCEEE
Confidence            4566666655  22211  22  4456777777777776655 3345677777777777664321    45677777777


Q ss_pred             eecCCCcCeEEEcc-CCcceEEEeecCCCceEEE-eCCCccEEEEeeCcE---eeecCCCcccceeccccCCCCChhhHH
Q 041569          168 ISHCHSLGRIMISS-NKLEHLLISSCYGLNALDV-DAPRLLSFIFDLNPI---PIISTNALCPWNVTLDCDSNLDCDWFL  242 (285)
Q Consensus       168 l~~c~~~~~~~i~~-~~L~~L~l~~~~~~~~~~~-~~p~L~~l~~~~~~~---~~~~~~~L~~l~i~~~~~~~~~~~~~~  242 (285)
                      ++++. ++.+.+.. ++|+.|++.+|.....+.+ ..++|++|+++++.+   ++...++|+.+++....+...+     
T Consensus       134 l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~-----  207 (457)
T 3bz5_A          134 CARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLD-----  207 (457)
T ss_dssp             CTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCC-----
T ss_pred             CCCCc-cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCeec-----
Confidence            77764 33333333 6777887777754444444 567788888877763   3334456777777665444331     


Q ss_pred             HHHHHhccCCCceEEEEEeCCCccCC
Q 041569          243 SLKEFLGASSQIERLCIDFSSVETNS  268 (285)
Q Consensus       243 ~l~~~l~~~~~L~~L~L~~~~~~~~~  268 (285)
                           ++.+++|+.|+++.+.....+
T Consensus       208 -----l~~l~~L~~L~Ls~N~l~~ip  228 (457)
T 3bz5_A          208 -----LNQNIQLTFLDCSSNKLTEID  228 (457)
T ss_dssp             -----CTTCTTCSEEECCSSCCSCCC
T ss_pred             -----cccCCCCCEEECcCCcccccC
Confidence                 456789999999887776644

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.77  E-value=1.3e-08  Score=94.59  Aligned_cols=62  Identities=27%  Similarity=0.317  Sum_probs=40.0

Q ss_pred             CCccccCcCCccEEEEcCeeecC-----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeec
Q 041569          108 LPQTIFSAKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISH  170 (285)
Q Consensus       108 l~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~  170 (285)
                      +|..+..+++|++|+|++|.+..     ....+++|++|++. ..+++..+..+...|++|++|++.+
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~  351 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIER  351 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeec
Confidence            34444457788888888877543     12456777777776 4455666666666677777777773

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.75  E-value=4.4e-09  Score=91.64  Aligned_cols=37  Identities=14%  Similarity=0.182  Sum_probs=23.5

Q ss_pred             HHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569          243 SLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR  280 (285)
Q Consensus       243 ~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~  280 (285)
                      .+...+..+++|+.|+++.+.....+.. +|.++++|+
T Consensus       268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~  304 (353)
T 2z80_A          268 QVMKLLNQISGLLELEFSRNQLKSVPDG-IFDRLTSLQ  304 (353)
T ss_dssp             HHHHHHHTCTTCCEEECCSSCCCCCCTT-TTTTCTTCC
T ss_pred             hhHHHHhcccCCCEEECCCCCCCccCHH-HHhcCCCCC
Confidence            3445677888999999988877754432 244444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.73  E-value=8.9e-09  Score=93.31  Aligned_cols=168  Identities=18%  Similarity=0.081  Sum_probs=85.9

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE  164 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  164 (285)
                      ++++.|+++..  .. ....+..+..+++|+.|+++++.+..    ....+++|++|+|.++.++.-. ...+..+++|+
T Consensus       104 ~~L~~L~Ls~n--~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~  179 (477)
T 2id5_A          104 SNLTKLDISEN--KI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLI  179 (477)
T ss_dssp             TTCCEEECTTS--CC-CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCC
T ss_pred             CCCCEEECCCC--cc-ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCc
Confidence            45666666541  11 11223344456777888877775543    2235677777777777663321 12245667777


Q ss_pred             eeeeecCCCcCeEE---Ecc-CCcceEEEeecCC-----------------------CceEE---E-eCCCccEEEEeeC
Q 041569          165 DLSISHCHSLGRIM---ISS-NKLEHLLISSCYG-----------------------LNALD---V-DAPRLLSFIFDLN  213 (285)
Q Consensus       165 ~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~-----------------------~~~~~---~-~~p~L~~l~~~~~  213 (285)
                      .|++.++. +..+.   +.. ++|+.|++.+|..                       +..+.   + ..++|+.|+++++
T Consensus       180 ~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          180 VLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             EEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred             EEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence            77776653 11111   111 3444444444432                       22221   1 3456666666655


Q ss_pred             cEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCC
Q 041569          214 PIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNS  268 (285)
Q Consensus       214 ~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~  268 (285)
                      .+.      +...++|+.++++...+.....       ..+..+++|+.|+|+.+.+...+
T Consensus       259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~~  312 (477)
T 2id5_A          259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEP-------YAFRGLNYLRVLNVSGNQLTTLE  312 (477)
T ss_dssp             CCCEECTTSCTTCTTCCEEECCSSCCSEECT-------TTBTTCTTCCEEECCSSCCSCCC
T ss_pred             cCCccChhhccccccCCEEECCCCccceECH-------HHhcCcccCCEEECCCCcCceeC
Confidence            422      1122455556555443333222       23456778888888777666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.72  E-value=5.7e-09  Score=93.76  Aligned_cols=166  Identities=12%  Similarity=0.071  Sum_probs=114.4

Q ss_pred             CCCceEEEEeeeCCCccccC-CccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYAL-PQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      .+++.+++...  .  ...+ +..+..+++|+.|+|++|.+..    ....+++|++|+|.++.++.-. ...+..+++|
T Consensus        64 ~~l~~L~L~~n--~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L  138 (440)
T 3zyj_A           64 TNTRLLNLHEN--Q--IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKL  138 (440)
T ss_dssp             TTCSEEECCSC--C--CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSC
T ss_pred             CCCcEEEccCC--c--CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccC
Confidence            46777777652  2  1222 2345568999999999997765    2346899999999999774211 1225678999


Q ss_pred             ceeeeecCCCcCeEEE---cc-CCcceEEEeecCCCceEEE----eCCCccEEEEeeCcEe----eecCCCcccceeccc
Q 041569          164 EDLSISHCHSLGRIMI---SS-NKLEHLLISSCYGLNALDV----DAPRLLSFIFDLNPIP----IISTNALCPWNVTLD  231 (285)
Q Consensus       164 e~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~~~~~~~~----~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~  231 (285)
                      ++|+++++. ++.+.-   .. ++|+.|++.++..+..+..    ..++|++|+++++.+.    +...++|+.++++.+
T Consensus       139 ~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          139 KELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN  217 (440)
T ss_dssp             CEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred             ceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC
Confidence            999999875 443322   11 8999999998765555542    4689999999988732    233457888888776


Q ss_pred             cCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccC
Q 041569          232 CDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETN  267 (285)
Q Consensus       232 ~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~  267 (285)
                      .+.....       ..+..+++|+.|+|+.+.+...
T Consensus       218 ~l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~  246 (440)
T 3zyj_A          218 HLSAIRP-------GSFQGLMHLQKLWMIQSQIQVI  246 (440)
T ss_dssp             CCCEECT-------TTTTTCTTCCEEECTTCCCCEE
T ss_pred             ccCccCh-------hhhccCccCCEEECCCCceeEE
Confidence            5554433       3456789999999988877653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.71  E-value=8.1e-09  Score=96.30  Aligned_cols=119  Identities=19%  Similarity=0.202  Sum_probs=61.2

Q ss_pred             CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569           90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED  165 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  165 (285)
                      +++.++++.  .  ....+|..+..+++|++|++++|.+..    ....+++|++|++.++.+....-...+..+++|++
T Consensus       279 ~L~~L~l~~--n--~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  354 (606)
T 3t6q_A          279 GLQELDLTA--T--HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE  354 (606)
T ss_dssp             TCSEEECTT--S--CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred             CCCEEeccC--C--ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence            455555443  1  122455555556667777777665543    22346666666666664421111112445667777


Q ss_pred             eeeecCCCcCeEE-----Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCc
Q 041569          166 LSISHCHSLGRIM-----ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNP  214 (285)
Q Consensus       166 L~l~~c~~~~~~~-----i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~  214 (285)
                      |++++|. ++...     +.. ++|+.|++.++. +..+.   + ..|+|++|++.++.
T Consensus       355 L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          355 LDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             EECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCC
T ss_pred             EECCCCc-cccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCc
Confidence            7776654 22222     111 667777776663 22221   1 24666666666655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.70  E-value=6.2e-09  Score=87.90  Aligned_cols=164  Identities=16%  Similarity=0.128  Sum_probs=97.9

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCee-ecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCK-LEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      ++++.+++..  .... ...+..+..+++|++|++++|. +..    ....+++|++|++.++.++... ...+..+++|
T Consensus        56 ~~L~~L~l~~--n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L  131 (285)
T 1ozn_A           56 RNLTILWLHS--NVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAAL  131 (285)
T ss_dssp             TTCCEEECCS--SCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTC
T ss_pred             CCCCEEECCC--Cccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC-HhHhhCCcCC
Confidence            4666666654  2111 1123444556778888888775 443    2235678888888877663211 1224567888


Q ss_pred             ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEee------ecCCCcccceec
Q 041569          164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIPI------ISTNALCPWNVT  229 (285)
Q Consensus       164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~~------~~~~~L~~l~i~  229 (285)
                      ++|+++++. ++.+.   +.. ++|+.|++.++. +..+.   + ..++|++|++.++.+.-      ...++|+.++++
T Consensus       132 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  209 (285)
T 1ozn_A          132 QYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF  209 (285)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEECCCCc-ccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence            888888764 33222   111 678888888773 44443   1 35778888888776321      233577777777


Q ss_pred             cccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          230 LDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       230 ~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      ...+...+.       ..+..+++|+.|+++.+...
T Consensus       210 ~n~l~~~~~-------~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          210 ANNLSALPT-------EALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             SSCCSCCCH-------HHHTTCTTCCEEECCSSCEE
T ss_pred             CCcCCcCCH-------HHcccCcccCEEeccCCCcc
Confidence            655554433       44567888888888776664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.69  E-value=1.5e-08  Score=87.28  Aligned_cols=79  Identities=14%  Similarity=0.119  Sum_probs=40.7

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-CCccccccceEEeeeeecChHHHHHHHhCCCccceee
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLS  167 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  167 (285)
                      ++++.+++..  .... ...|..+..+++|++|+++++.+.. +..-+++|++|++.++.++... ...+..+++|+.|+
T Consensus        76 ~~L~~L~L~~--n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~  151 (330)
T 1xku_A           76 KNLHTLILIN--NKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVE  151 (330)
T ss_dssp             TTCCEEECCS--SCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEE
T ss_pred             CCCCEEECCC--CcCC-eeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccC-HhHhcCCccccEEE
Confidence            4566666654  1111 1123444456777777777766544 2223466666666666553221 11234556666666


Q ss_pred             eecC
Q 041569          168 ISHC  171 (285)
Q Consensus       168 l~~c  171 (285)
                      ++++
T Consensus       152 l~~n  155 (330)
T 1xku_A          152 LGTN  155 (330)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            6555

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.69  E-value=2.7e-08  Score=90.11  Aligned_cols=163  Identities=18%  Similarity=0.150  Sum_probs=101.0

Q ss_pred             CCCceEEEEeeeCCCccccCCccc-cCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTI-FSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      ++++.|++..  .  ....+|... ..+++|+.|+|++|.+..    ....+++|++|+|.++.++...- ..+..+++|
T Consensus        80 ~~L~~L~L~~--n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L  154 (477)
T 2id5_A           80 FNLRTLGLRS--N--RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSL  154 (477)
T ss_dssp             TTCCEEECCS--S--CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTC
T ss_pred             ccCCEEECCC--C--cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCC
Confidence            4788888765  2  233455543 458999999999997754    33568999999999986633211 125678999


Q ss_pred             ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcE-e-----eecCCCcccceec
Q 041569          164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPI-P-----IISTNALCPWNVT  229 (285)
Q Consensus       164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~-~-----~~~~~~L~~l~i~  229 (285)
                      ++|++++|. ++.+.   +.. ++|+.|++.++. +..+.   + ..++|++|++.++.. .     .....+|+.++++
T Consensus       155 ~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  232 (477)
T 2id5_A          155 EQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT  232 (477)
T ss_dssp             CEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred             CEEECCCCc-CcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence            999999985 33322   222 899999999984 33322   1 457788888877541 0     0111256666665


Q ss_pred             cccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          230 LDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       230 ~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      ...+...+.       ..+..+++|+.|+|+.+...
T Consensus       233 ~n~l~~~~~-------~~~~~l~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          233 HCNLTAVPY-------LAVRHLVYLRFLNLSYNPIS  261 (477)
T ss_dssp             SSCCCSCCH-------HHHTTCTTCCEEECCSSCCC
T ss_pred             CCcccccCH-------HHhcCccccCeeECCCCcCC
Confidence            544443332       23344555555555544433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.69  E-value=1.3e-08  Score=83.56  Aligned_cols=179  Identities=13%  Similarity=0.110  Sum_probs=114.9

Q ss_pred             CCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCee-ecC-C---CccccccceEEeee-eecChHHHHHHHhCCCc
Q 041569           90 GLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCK-LEL-P---SFTCAHLKKLLLSE-FPLNDRELHHLISKCPL  162 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-~~~-~---~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~  162 (285)
                      +++.+++...  .  ...++. .+..+++|++|+++++. +.. .   ...+++|++|++.+ +.++.-. ...+..+++
T Consensus        32 ~l~~L~l~~n--~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~  106 (239)
T 2xwt_C           32 STQTLKLIET--H--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPL  106 (239)
T ss_dssp             TCCEEEEESC--C--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTT
T ss_pred             cccEEEEeCC--c--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCC
Confidence            6778887762  2  223344 34457899999999885 544 2   24678999999988 5553211 112456899


Q ss_pred             cceeeeecCCCcCeEE-Ecc-CCcc---eEEEeecCCCceEEE----eCCCcc-EEEEeeCcEeee-----cCCCcccce
Q 041569          163 LEDLSISHCHSLGRIM-ISS-NKLE---HLLISSCYGLNALDV----DAPRLL-SFIFDLNPIPII-----STNALCPWN  227 (285)
Q Consensus       163 Le~L~l~~c~~~~~~~-i~~-~~L~---~L~l~~~~~~~~~~~----~~p~L~-~l~~~~~~~~~~-----~~~~L~~l~  227 (285)
                      |+.|+++++. ++.+. +.. ++|+   .|++.++..+..+..    ..++|+ +|+++++.+...     ..++|+.++
T Consensus       107 L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~  185 (239)
T 2xwt_C          107 LKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY  185 (239)
T ss_dssp             CCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEE
T ss_pred             CCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEE
Confidence            9999999875 22211 222 5666   888888844444432    367888 898888764321     124677777


Q ss_pred             eccc-cCCCCChhhHHHHHHHhccC-CCceEEEEEeCCCccCCCchhhhhhhheeec
Q 041569          228 VTLD-CDSNLDCDWFLSLKEFLGAS-SQIERLCIDFSSVETNSEDATLHFLYKLRLW  282 (285)
Q Consensus       228 i~~~-~~~~~~~~~~~~l~~~l~~~-~~L~~L~L~~~~~~~~~~~~~f~~L~~L~l~  282 (285)
                      ++.. .+...+.       ..+..+ ++|+.|+++.+.....+.. .|.+|++|++.
T Consensus       186 L~~n~~l~~i~~-------~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~  234 (239)
T 2xwt_C          186 LNKNKYLTVIDK-------DAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR  234 (239)
T ss_dssp             CTTCTTCCEECT-------TTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred             cCCCCCcccCCH-------HHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence            7765 2544433       345667 8999999988888766554 57778887753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.69  E-value=3.7e-08  Score=86.91  Aligned_cols=17  Identities=24%  Similarity=0.261  Sum_probs=8.7

Q ss_pred             ccCCCceEEEEEeCCCc
Q 041569          249 GASSQIERLCIDFSSVE  265 (285)
Q Consensus       249 ~~~~~L~~L~L~~~~~~  265 (285)
                      ..+++|+.|+++.+...
T Consensus       269 ~~l~~L~~L~L~~n~l~  285 (390)
T 3o6n_A          269 VKMQRLERLYISNNRLV  285 (390)
T ss_dssp             TTCSSCCEEECCSSCCC
T ss_pred             cccccCCEEECCCCcCc
Confidence            34555555555554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.67  E-value=3e-08  Score=86.29  Aligned_cols=165  Identities=15%  Similarity=0.115  Sum_probs=113.1

Q ss_pred             CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      +++++++++.  ..  ...++. .+..+++|++|++++|.+..    ....+++|++|+|.++.++.-. ...+..+++|
T Consensus        52 ~~L~~L~l~~--n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L  126 (353)
T 2z80_A           52 EAVKSLDLSN--NR--ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSL  126 (353)
T ss_dssp             TTCCEEECTT--SC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTC
T ss_pred             ccCcEEECCC--Cc--CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccC
Confidence            4688887765  22  223343 45668999999999997765    2346899999999999875322 2335679999


Q ss_pred             ceeeeecCCCcCeEE----Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEee------ecCCCccccee
Q 041569          164 EDLSISHCHSLGRIM----ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIPI------ISTNALCPWNV  228 (285)
Q Consensus       164 e~L~l~~c~~~~~~~----i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~~------~~~~~L~~l~i  228 (285)
                      ++|+++++. ++.+.    +.. ++|+.|++.++..+..+.   + ..++|++|++.++.+.-      ...++|+++++
T Consensus       127 ~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  205 (353)
T 2z80_A          127 TFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL  205 (353)
T ss_dssp             SEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             CEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence            999999885 33322    222 899999999985444442   2 46889999999987422      23346778888


Q ss_pred             ccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569          229 TLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET  266 (285)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~  266 (285)
                      +...+...+       ..+++.+++|+.|+++.+....
T Consensus       206 ~~n~l~~~~-------~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          206 HMKQHILLL-------EIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             ECSCSTTHH-------HHHHHHTTTEEEEEEESCBCTT
T ss_pred             CCCccccch-------hhhhhhcccccEEECCCCcccc
Confidence            765543222       2455668999999998877664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.67  E-value=8.2e-09  Score=87.64  Aligned_cols=159  Identities=19%  Similarity=0.190  Sum_probs=112.1

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL  166 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  166 (285)
                      ++++.+.+..  +.  ...++ .+..+++|+.|++++|.+..  ....+++|++|++.++.+++-  .. +..+++|+.|
T Consensus        46 ~~L~~L~l~~--~~--i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L  117 (291)
T 1h6t_A           46 NSIDQIIANN--SD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSL  117 (291)
T ss_dssp             HTCCEEECTT--SC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEE
T ss_pred             CcccEEEccC--CC--cccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--hh-hccCCCCCEE
Confidence            4678777655  22  22233 35568999999999998876  345689999999999988542  12 6789999999


Q ss_pred             eeecCCCcCeEE-Ecc-CCcceEEEeecCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCCh
Q 041569          167 SISHCHSLGRIM-ISS-NKLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDC  238 (285)
Q Consensus       167 ~l~~c~~~~~~~-i~~-~~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~  238 (285)
                      ++++|. ++.+. +.. ++|+.|++++|. +..+. + ..++|+.|+++++.+.    +...++|+.++++...+...+ 
T Consensus       118 ~L~~n~-i~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~-  194 (291)
T 1h6t_A          118 SLEHNG-ISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-  194 (291)
T ss_dssp             ECTTSC-CCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG-
T ss_pred             ECCCCc-CCCChhhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCCh-
Confidence            999985 33321 222 899999999985 33332 2 5689999999988732    334468888888776554432 


Q ss_pred             hhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569          239 DWFLSLKEFLGASSQIERLCIDFSSVET  266 (285)
Q Consensus       239 ~~~~~l~~~l~~~~~L~~L~L~~~~~~~  266 (285)
                              -+..+++|+.|+++.+....
T Consensus       195 --------~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          195 --------ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             --------GGTTCTTCSEEEEEEEEEEC
T ss_pred             --------hhccCCCCCEEECcCCcccC
Confidence                    25678999999998776543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.66  E-value=1.6e-08  Score=86.57  Aligned_cols=171  Identities=13%  Similarity=0.162  Sum_probs=121.4

Q ss_pred             HCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569           88 ENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED  165 (285)
Q Consensus        88 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  165 (285)
                      .++++++.+..  +.  ...++ .+..+++|+.|++++|.+..  ....+++|++|++.++.+++-.   -+..+++|++
T Consensus        40 l~~L~~L~l~~--~~--i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~  111 (308)
T 1h6u_A           40 LDGITTLSAFG--TG--VTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKT  111 (308)
T ss_dssp             HHTCCEEECTT--SC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTTCCE
T ss_pred             cCCcCEEEeeC--CC--ccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCCCCE
Confidence            35788888765  22  22344 45668999999999998776  3456899999999999885422   3678999999


Q ss_pred             eeeecCCCcCeEE-Ecc-CCcceEEEeecCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCC
Q 041569          166 LSISHCHSLGRIM-ISS-NKLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLD  237 (285)
Q Consensus       166 L~l~~c~~~~~~~-i~~-~~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~  237 (285)
                      |++++|. ++.+. +.. ++|++|++.++. +..+. + ..++|+.|++.++.+.    +...++|+.++++...+...+
T Consensus       112 L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          112 LDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             EECTTSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             EECCCCC-CCCchhhcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcCh
Confidence            9999986 33221 222 899999999986 22222 3 5789999999998742    334468888888876655443


Q ss_pred             hhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569          238 CDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR  280 (285)
Q Consensus       238 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~  280 (285)
                      .         +..+++|+.|+++.+.....+.   +.++++|+
T Consensus       190 ~---------l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~  220 (308)
T 1h6u_A          190 P---------LASLPNLIEVHLKNNQISDVSP---LANTSNLF  220 (308)
T ss_dssp             G---------GGGCTTCCEEECTTSCCCBCGG---GTTCTTCC
T ss_pred             h---------hcCCCCCCEEEccCCccCcccc---ccCCCCCC
Confidence            2         5779999999999888876542   44455544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.66  E-value=1.6e-08  Score=84.67  Aligned_cols=163  Identities=16%  Similarity=0.148  Sum_probs=105.8

Q ss_pred             CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      .++++|+++.  ..  ...++. .+..+++|++|+++++.+.. .   ...+++|++|+|.++.++.-. ...+..+++|
T Consensus        37 ~~l~~L~l~~--n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L  111 (270)
T 2o6q_A           37 ADTKKLDLQS--NK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNL  111 (270)
T ss_dssp             TTCSEEECCS--SC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSC
T ss_pred             CCCCEEECcC--CC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCC
Confidence            4678887765  22  223443 44567899999999887765 1   245889999999988764211 1234668899


Q ss_pred             ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCcccceec
Q 041569          164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNVT  229 (285)
Q Consensus       164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~  229 (285)
                      ++|+++++. ++.+.   +.. ++|++|++.++. +..+.   + ..++|++|++.++.+.      +...++|++++++
T Consensus       112 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  189 (270)
T 2o6q_A          112 AELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD  189 (270)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence            999998874 33222   122 789999998884 33332   1 3588889988887632      1233577888887


Q ss_pred             cccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          230 LDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       230 ~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      ...+...+.       ..+..+++|+.|+|+-+...
T Consensus       190 ~N~l~~~~~-------~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          190 NNQLKRVPE-------GAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             SSCCSCCCT-------TTTTTCTTCCEEECCSSCBC
T ss_pred             CCcCCcCCH-------HHhccccCCCEEEecCCCee
Confidence            655554443       34566788888888777654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.63  E-value=3.8e-08  Score=89.03  Aligned_cols=55  Identities=16%  Similarity=0.177  Sum_probs=26.1

Q ss_pred             CcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569          114 SAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC  171 (285)
Q Consensus       114 ~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  171 (285)
                      .+++|+.|++++|.+..  ....+++|++|++.++.+++..-   +..+++|+.|++++|
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n  231 (466)
T 1o6v_A          175 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGN  231 (466)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSS
T ss_pred             cCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCC
Confidence            34555555555555443  12234555555555554422110   333555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.62  E-value=1.6e-08  Score=80.66  Aligned_cols=99  Identities=19%  Similarity=0.161  Sum_probs=53.3

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL  166 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  166 (285)
                      ++++.+++..  ....  .++ .+..+++|++|++++|.+..  ....+++|++|++.++.+++..... +..+++|+.|
T Consensus        44 ~~L~~L~l~~--n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L  117 (197)
T 4ezg_A           44 NSLTYITLAN--INVT--DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLL  117 (197)
T ss_dssp             HTCCEEEEES--SCCS--CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEE
T ss_pred             CCccEEeccC--CCcc--ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEE
Confidence            4566666665  2211  333 34556777777777775443  2234677777777777664433222 4456777777


Q ss_pred             eeecCCCcCe-E-EEcc-CCcceEEEeecC
Q 041569          167 SISHCHSLGR-I-MISS-NKLEHLLISSCY  193 (285)
Q Consensus       167 ~l~~c~~~~~-~-~i~~-~~L~~L~l~~~~  193 (285)
                      ++++|.-... . .+.. ++|+.|++.+|.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            7776642110 1 1111 556666666653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.62  E-value=2e-08  Score=84.26  Aligned_cols=163  Identities=14%  Similarity=0.108  Sum_probs=111.2

Q ss_pred             HCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569           88 ENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED  165 (285)
Q Consensus        88 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  165 (285)
                      .++++.+.+...  .  ...+ ..+..+++|+.|++++|.+..  ....+++|++|++.++.++.-. ...+..+++|++
T Consensus        40 l~~L~~L~l~~~--~--i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  113 (272)
T 3rfs_A           40 LNSIDQIIANNS--D--IKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKE  113 (272)
T ss_dssp             HTTCCEEECTTS--C--CCCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCE
T ss_pred             ccceeeeeeCCC--C--cccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCE
Confidence            457777776552  1  1122 235668999999999998766  2346899999999999774211 122467899999


Q ss_pred             eeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCcccceeccc
Q 041569          166 LSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLD  231 (285)
Q Consensus       166 L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~  231 (285)
                      |++++|. ++.+.   +.. ++|+.|++.+|. +..+.   + ..++|++|++.++.+.      +...++|+.+++...
T Consensus       114 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          114 LVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCc-CCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            9999885 33322   222 789999999984 33333   2 4689999999988742      123457888888776


Q ss_pred             cCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          232 CDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       232 ~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      .+...+.       ..+..+++|+.|+++.+...
T Consensus       192 ~l~~~~~-------~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          192 QLKSVPD-------GVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CCSCCCT-------TTTTTCTTCCEEECCSSCBC
T ss_pred             cCCccCH-------HHHhCCcCCCEEEccCCCcc
Confidence            6555443       34567899999999777654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.62  E-value=9.5e-09  Score=88.24  Aligned_cols=170  Identities=15%  Similarity=0.137  Sum_probs=114.2

Q ss_pred             CCCceEEEEeeeCCCccccCC-ccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569           89 NGLEVLDFMVIADENTYYALP-QTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED  165 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  165 (285)
                      +++++++++.  ..  ...++ ..+..+++|+.|+|++|.+..  ....+++|++|++.++.++.      +..+++|++
T Consensus        34 ~~L~~L~L~~--n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~  103 (317)
T 3o53_A           34 WNVKELDLSG--NP--LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIET  103 (317)
T ss_dssp             GGCSEEECTT--SC--CCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTTCCE
T ss_pred             CCCCEEECcC--Cc--cCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCCcCE
Confidence            4688887765  22  22233 345568999999999987754  34568999999999987743      224589999


Q ss_pred             eeeecCCCcCeEEEcc-CCcceEEEeecC--CCceEEE-eCCCccEEEEeeCcEee-------ecCCCcccceeccccCC
Q 041569          166 LSISHCHSLGRIMISS-NKLEHLLISSCY--GLNALDV-DAPRLLSFIFDLNPIPI-------ISTNALCPWNVTLDCDS  234 (285)
Q Consensus       166 L~l~~c~~~~~~~i~~-~~L~~L~l~~~~--~~~~~~~-~~p~L~~l~~~~~~~~~-------~~~~~L~~l~i~~~~~~  234 (285)
                      |+++++. ++.+.... ++|+.|+++++.  .+....+ ..++|++|+++++.+.-       ...++|++++++...+.
T Consensus       104 L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          104 LHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             EECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             EECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            9999875 55444444 889999999985  2212222 46889999998887321       12368888888776554


Q ss_pred             CCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569          235 NLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR  280 (285)
Q Consensus       235 ~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~  280 (285)
                      ..+..         ..+++|+.|+++.+.....+..  |..+++|+
T Consensus       183 ~~~~~---------~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~L~  217 (317)
T 3o53_A          183 DVKGQ---------VVFAKLKTLDLSSNKLAFMGPE--FQSAAGVT  217 (317)
T ss_dssp             EEECC---------CCCTTCCEEECCSSCCCEECGG--GGGGTTCS
T ss_pred             ccccc---------cccccCCEEECCCCcCCcchhh--hcccCccc
Confidence            44221         2378999999998888764332  44455554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.62  E-value=2.5e-08  Score=90.19  Aligned_cols=78  Identities=21%  Similarity=0.178  Sum_probs=43.0

Q ss_pred             ccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc-CCcceEE
Q 041569          112 IFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLL  188 (285)
Q Consensus       112 ~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~-~~L~~L~  188 (285)
                      +..+++|++|++++|.+..  +...+++|++|++.++.+++-   ..+..+++|+.|++++|.-.....+.. ++|+.|+
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  271 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK  271 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEE
Confidence            4456778888887776654  223467777777777766332   124456667777766664111111111 4555555


Q ss_pred             Eeec
Q 041569          189 ISSC  192 (285)
Q Consensus       189 l~~~  192 (285)
                      +.+|
T Consensus       272 l~~n  275 (466)
T 1o6v_A          272 LGAN  275 (466)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            5554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.62  E-value=5.8e-08  Score=77.36  Aligned_cols=119  Identities=18%  Similarity=0.181  Sum_probs=87.2

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE  164 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  164 (285)
                      ++++.+.+...  .   ...+..+..+++|++|++++|.+..    ....+++|++|+++++.+++..... +..+++|+
T Consensus        66 ~~L~~L~l~~n--~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~  139 (197)
T 4ezg_A           66 HNIKDLTINNI--H---ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVN  139 (197)
T ss_dssp             TTCSEEEEESC--C---CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCC
T ss_pred             CCCCEEEccCC--C---CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHH-HhhCCCCC
Confidence            57999999873  2   2233456678999999999998764    3346899999999999997755544 57899999


Q ss_pred             eeeeecCCCcCeEE-Ecc-CCcceEEEeecCCCceE-EE-eCCCccEEEEeeCc
Q 041569          165 DLSISHCHSLGRIM-ISS-NKLEHLLISSCYGLNAL-DV-DAPRLLSFIFDLNP  214 (285)
Q Consensus       165 ~L~l~~c~~~~~~~-i~~-~~L~~L~l~~~~~~~~~-~~-~~p~L~~l~~~~~~  214 (285)
                      +|++++|..++.+. +.. ++|+.|++.+|. +..+ .+ ..|+|++|++.++.
T Consensus       140 ~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          140 SIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred             EEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence            99999997555443 222 789999999885 3222 22 56888888887765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.60  E-value=1.4e-08  Score=92.55  Aligned_cols=169  Identities=15%  Similarity=0.130  Sum_probs=110.1

Q ss_pred             CCceEEEEeeeCCCccccCC-ccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569           90 GLEVLDFMVIADENTYYALP-QTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL  166 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  166 (285)
                      +++.|+++..  .  ...++ ..+..+++|+.|+|++|.+..  +...+++|++|+|+++.++.      +...|+|+.|
T Consensus        35 ~L~~L~Ls~n--~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L  104 (487)
T 3oja_A           35 NVKELDLSGN--P--LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETL  104 (487)
T ss_dssp             GCCEEECCSS--C--CCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEE
T ss_pred             CccEEEeeCC--c--CCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEE
Confidence            6778877662  2  12233 455567899999999887654  44568889999999887743      1234889999


Q ss_pred             eeecCCCcCeEEEcc-CCcceEEEeecC--CCceEEE-eCCCccEEEEeeCcEee------e-cCCCcccceeccccCCC
Q 041569          167 SISHCHSLGRIMISS-NKLEHLLISSCY--GLNALDV-DAPRLLSFIFDLNPIPI------I-STNALCPWNVTLDCDSN  235 (285)
Q Consensus       167 ~l~~c~~~~~~~i~~-~~L~~L~l~~~~--~~~~~~~-~~p~L~~l~~~~~~~~~------~-~~~~L~~l~i~~~~~~~  235 (285)
                      ++++|. ++.+.... ++|+.|++.++.  ......+ ..++|++|+++++.+.-      . ..++|+.++++...+..
T Consensus       105 ~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          105 HAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             ECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             ECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            998875 44333333 789999998885  1112222 46889999988876321      1 34678888887755544


Q ss_pred             CChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569          236 LDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR  280 (285)
Q Consensus       236 ~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~  280 (285)
                      .+.         ...+++|+.|+|+.+.....+..  |..+++|+
T Consensus       184 ~~~---------~~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~  217 (487)
T 3oja_A          184 VKG---------QVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVT  217 (487)
T ss_dssp             EEC---------CCCCTTCCEEECCSSCCCEECGG--GGGGTTCS
T ss_pred             ccc---------cccCCCCCEEECCCCCCCCCCHh--HcCCCCcc
Confidence            422         12478999999988888764322  44455444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.59  E-value=1.1e-07  Score=83.92  Aligned_cols=58  Identities=10%  Similarity=0.113  Sum_probs=33.4

Q ss_pred             CCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccC
Q 041569          202 APRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETN  267 (285)
Q Consensus       202 ~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~  267 (285)
                      .|+|++|+++++.+.      +...++|+.++++...+...+.        ....+++|+.|+|+.+.....
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~l~~L~~L~L~~n~l~~~  310 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL--------YGQPIPTLKVLDLSHNHLLHV  310 (390)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC--------SSSCCTTCCEEECCSSCCCCC
T ss_pred             CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc--------ccCCCCCCCEEECCCCcceec
Confidence            456666666665521      1223466666666544433221        225678999999988877653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.59  E-value=8.1e-09  Score=87.16  Aligned_cols=177  Identities=17%  Similarity=0.133  Sum_probs=117.5

Q ss_pred             CCCceEEEEeeeCCCccccCC-ccccCcCCccEEEEcCeeecC----CCccccccceEEeeeee-cChHHHHHHHhCCCc
Q 041569           89 NGLEVLDFMVIADENTYYALP-QTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFP-LNDRELHHLISKCPL  162 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~  162 (285)
                      +++++++++.  ..  ...++ ..+..+++|+.|+++++.+..    ....+++|++|++.++. ++.-. ...+..+++
T Consensus        32 ~~l~~L~l~~--n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~  106 (285)
T 1ozn_A           32 AASQRIFLHG--NR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGR  106 (285)
T ss_dssp             TTCSEEECTT--SC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTT
T ss_pred             CCceEEEeeC--Cc--CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcC
Confidence            5788888765  22  22233 345568999999999987654    23468999999999986 53221 122567899


Q ss_pred             cceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCccccee
Q 041569          163 LEDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNV  228 (285)
Q Consensus       163 Le~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i  228 (285)
                      |++|++++|. ++.+.   +.. ++|++|++.++. +..+.   + ..++|++|++.++.+.      +...++|+.+++
T Consensus       107 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          107 LHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (285)
T ss_dssp             CCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence            9999999885 33221   222 789999999985 33332   2 4689999999998742      223457888888


Q ss_pred             ccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569          229 TLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR  280 (285)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~  280 (285)
                      +...+.....       ..+..+++|+.|+++.+.....+. ..|..+++|+
T Consensus       185 ~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~  228 (285)
T 1ozn_A          185 HQNRVAHVHP-------HAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQ  228 (285)
T ss_dssp             CSSCCCEECT-------TTTTTCTTCCEEECCSSCCSCCCH-HHHTTCTTCC
T ss_pred             CCCcccccCH-------hHccCcccccEeeCCCCcCCcCCH-HHcccCcccC
Confidence            7755544422       345678999999998887776432 2355555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.58  E-value=1.2e-07  Score=87.16  Aligned_cols=164  Identities=14%  Similarity=0.069  Sum_probs=107.6

Q ss_pred             HCCCceEEEEeeeCCCccccCCcccc-CcCCccEEEEcCeeecC-------CCccccccceEEeeeeecChHH-HHHHHh
Q 041569           88 ENGLEVLDFMVIADENTYYALPQTIF-SAKLLTSLKLVGCKLEL-------PSFTCAHLKKLLLSEFPLNDRE-LHHLIS  158 (285)
Q Consensus        88 ~~~l~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~-------~~~~~~~L~~L~L~~~~~~~~~-l~~l~~  158 (285)
                      ..+++.+++..  ..  ...+|..++ .+++|+.|++++|.+..       ....+++|++|+++++.++.-. ....+.
T Consensus       309 ~~~L~~L~l~~--n~--l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  384 (549)
T 2z81_A          309 LEKVKRITVEN--SK--VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL  384 (549)
T ss_dssp             STTCCEEEEES--SC--CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG
T ss_pred             cccceEEEecc--Cc--cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhh
Confidence            35677777765  22  235676665 58999999999998753       1346899999999999885432 345578


Q ss_pred             CCCccceeeeecCCCcCeEE--Ecc-CCcceEEEeecCCCceEEE-eCCCccEEEEeeCcEe--eecCCCcccceecccc
Q 041569          159 KCPLLEDLSISHCHSLGRIM--ISS-NKLEHLLISSCYGLNALDV-DAPRLLSFIFDLNPIP--IISTNALCPWNVTLDC  232 (285)
Q Consensus       159 ~cp~Le~L~l~~c~~~~~~~--i~~-~~L~~L~l~~~~~~~~~~~-~~p~L~~l~~~~~~~~--~~~~~~L~~l~i~~~~  232 (285)
                      .+++|++|++++|. ++.+.  +.. ++|+.|+++++. +..+.- ..++|++|+++++.+.  ....++|+.++++...
T Consensus       385 ~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~  462 (549)
T 2z81_A          385 TLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK  462 (549)
T ss_dssp             GCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             cCCCCCEEECCCCC-CccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc
Confidence            89999999999984 33221  111 688888888874 333222 1257788887777632  1234577777777655


Q ss_pred             CCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569          233 DSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET  266 (285)
Q Consensus       233 ~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~  266 (285)
                      +..++..         ..+++|+.|+|+.+....
T Consensus       463 l~~ip~~---------~~l~~L~~L~Ls~N~l~~  487 (549)
T 2z81_A          463 LKTLPDA---------SLFPVLLVMKISRNQLKS  487 (549)
T ss_dssp             CSSCCCG---------GGCTTCCEEECCSSCCCC
T ss_pred             cCcCCCc---------ccCccCCEEecCCCccCC
Confidence            5544331         236777777777766654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.58  E-value=1.5e-08  Score=85.11  Aligned_cols=134  Identities=20%  Similarity=0.167  Sum_probs=73.5

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE  164 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  164 (285)
                      ++++.++++.  ....  .+ ..+..+++|++|++++|.+.. .   ...+++|++|++.++.++... ...+..+++|+
T Consensus        63 ~~L~~L~l~~--n~l~--~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  136 (272)
T 3rfs_A           63 PNVRYLALGG--NKLH--DI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP-DGVFDKLTNLT  136 (272)
T ss_dssp             TTCCEEECTT--SCCC--CC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCC
T ss_pred             CCCcEEECCC--CCCC--Cc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC-HHHhccCCCCC
Confidence            4666666654  2111  12 244556777777777776654 1   235677777777777653211 11244567777


Q ss_pred             eeeeecCCCcCeEEE---cc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCcccceecc
Q 041569          165 DLSISHCHSLGRIMI---SS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTL  230 (285)
Q Consensus       165 ~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~  230 (285)
                      .|++++|. ++.+..   .. ++|+.|++.+|. +..+.   + ..++|++|++.++.+.      +...++|+.+++..
T Consensus       137 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          137 YLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             EEECCCCc-cCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence            77777763 332221   11 677777777774 22222   1 3467777777776532      12234566666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.58  E-value=3.3e-08  Score=82.84  Aligned_cols=136  Identities=21%  Similarity=0.200  Sum_probs=66.2

Q ss_pred             CCCceEEEEeeeCCCccccCCcccc-CcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIF-SAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      ++++.|++..  .  ....++...+ .+++|++|+++++.+.. +   ...+++|++|++.++.++.-. ...+..+++|
T Consensus        61 ~~L~~L~l~~--n--~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L  135 (270)
T 2o6q_A           61 TKLRLLYLND--N--KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKL  135 (270)
T ss_dssp             TTCCEEECCS--S--CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred             CCCCEEECCC--C--ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC-HHHhCcCcCC
Confidence            3455555543  1  1123444333 35666666666665544 1   134566666666666552211 1113456666


Q ss_pred             ceeeeecCCCcCeEEE---cc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCcccceec
Q 041569          164 EDLSISHCHSLGRIMI---SS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNVT  229 (285)
Q Consensus       164 e~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~  229 (285)
                      +.|+++++. ++.+..   .. ++|+.|++.++. +..+.   + ..++|++|++.++.+.      +...++|+.+++.
T Consensus       136 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          136 TYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CEEECCCCc-CCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence            666666653 222211   11 566666666663 22222   1 2466666666665422      1122355555555


Q ss_pred             cc
Q 041569          230 LD  231 (285)
Q Consensus       230 ~~  231 (285)
                      .+
T Consensus       214 ~N  215 (270)
T 2o6q_A          214 EN  215 (270)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.58  E-value=1.4e-08  Score=94.72  Aligned_cols=160  Identities=19%  Similarity=0.198  Sum_probs=113.0

Q ss_pred             HCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569           88 ENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED  165 (285)
Q Consensus        88 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  165 (285)
                      ..+++.|.+..  +.  ...++ .+..+++|+.|+|++|.+..  ....+++|+.|.|.++.++.-.   .+..+++|+.
T Consensus        42 L~~L~~L~l~~--n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~  113 (605)
T 1m9s_A           42 LNSIDQIIANN--SD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKS  113 (605)
T ss_dssp             HTTCCCCBCTT--CC--CCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT---TSTTCTTCCE
T ss_pred             CCCCCEEECcC--CC--CCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh---hhccCCCCCE
Confidence            35677776654  22  22233 46678999999999998776  3457899999999999885421   3678999999


Q ss_pred             eeeecCCCcCeEE-Ecc-CCcceEEEeecCCCceEE-E-eCCCccEEEEeeCcE----eeecCCCcccceeccccCCCCC
Q 041569          166 LSISHCHSLGRIM-ISS-NKLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPI----PIISTNALCPWNVTLDCDSNLD  237 (285)
Q Consensus       166 L~l~~c~~~~~~~-i~~-~~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~----~~~~~~~L~~l~i~~~~~~~~~  237 (285)
                      |++++|. +..+. +.. ++|+.|++++|. +..+. + .+++|+.|+++++.+    ++...++|+.++++...+...+
T Consensus       114 L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~  191 (605)
T 1m9s_A          114 LSLEHNG-ISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR  191 (605)
T ss_dssp             EECTTSC-CCCCGGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG
T ss_pred             EEecCCC-CCCCccccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCCh
Confidence            9999986 33221 222 899999999985 33332 2 578999999998873    2344568888888876554431


Q ss_pred             hhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569          238 CDWFLSLKEFLGASSQIERLCIDFSSVET  266 (285)
Q Consensus       238 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~~  266 (285)
                               -+..+++|+.|+|+.+....
T Consensus       192 ---------~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          192 ---------ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             ---------GGTTCTTCSEEECCSEEEEC
T ss_pred             ---------HHccCCCCCEEEccCCcCcC
Confidence                     25678999999997765543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.57  E-value=3.5e-08  Score=84.62  Aligned_cols=57  Identities=9%  Similarity=-0.004  Sum_probs=30.5

Q ss_pred             CCCccEEEEeeCcEe-----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          202 APRLLSFIFDLNPIP-----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       202 ~p~L~~l~~~~~~~~-----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      .++|+.|++.++.+.     +...++|++++++...+.....       ..+..+++|+.|+|+.+...
T Consensus       220 l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-------QGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             TSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC-------GGGGGCTTCCEEECCSSEEE
T ss_pred             CCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC-------hHHhcCcCCCEEECcCCccc
Confidence            456666666665432     1223456666665543321111       23456777777777766665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.56  E-value=4.3e-08  Score=83.13  Aligned_cols=149  Identities=21%  Similarity=0.206  Sum_probs=100.8

Q ss_pred             ccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE--
Q 041569          106 YALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI--  179 (285)
Q Consensus       106 ~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i--  179 (285)
                      ..+|..+.  ++++.|+|+++.+..    ....+++|++|+|.++.++.-..   ...+++|+.|+++++. ++.+.-  
T Consensus        23 ~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~-l~~l~~~~   96 (290)
T 1p9a_G           23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQ-LQSLPLLG   96 (290)
T ss_dssp             SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSC-CSSCCCCT
T ss_pred             CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCc-CCcCchhh
Confidence            44554443  688999999887754    23468899999999887743211   1578999999999875 332211  


Q ss_pred             cc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEee------ecCCCcccceeccccCCCCChhhHHHHHHHh
Q 041569          180 SS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIPI------ISTNALCPWNVTLDCDSNLDCDWFLSLKEFL  248 (285)
Q Consensus       180 ~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~~------~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l  248 (285)
                      .. ++|+.|++.++. +..+.   + ..++|++|.++++.+..      ...++|+.++++...+...+.       ..+
T Consensus        97 ~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-------~~~  168 (290)
T 1p9a_G           97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-------GLL  168 (290)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-------TTT
T ss_pred             ccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH-------HHh
Confidence            11 789999998884 33332   2 46789999998887431      233578888887766655544       345


Q ss_pred             ccCCCceEEEEEeCCCccCC
Q 041569          249 GASSQIERLCIDFSSVETNS  268 (285)
Q Consensus       249 ~~~~~L~~L~L~~~~~~~~~  268 (285)
                      ..+++|+.|+|+.+.+...+
T Consensus       169 ~~l~~L~~L~L~~N~l~~ip  188 (290)
T 1p9a_G          169 NGLENLDTLLLQENSLYTIP  188 (290)
T ss_dssp             TTCTTCCEEECCSSCCCCCC
T ss_pred             cCcCCCCEEECCCCcCCccC
Confidence            67889999999888877643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.56  E-value=1.2e-07  Score=88.53  Aligned_cols=16  Identities=0%  Similarity=0.085  Sum_probs=7.2

Q ss_pred             ccCCCceEEEEEeCCC
Q 041569          249 GASSQIERLCIDFSSV  264 (285)
Q Consensus       249 ~~~~~L~~L~L~~~~~  264 (285)
                      ..+++|+.|+|+.+..
T Consensus       251 ~~l~~L~~L~Ls~N~l  266 (597)
T 3oja_B          251 LNYPGLVEVDLSYNEL  266 (597)
T ss_dssp             GGCTTCSEEECCSSCC
T ss_pred             ccCCCCCEEECCCCcc
Confidence            3444444444444433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.54  E-value=2.5e-08  Score=86.09  Aligned_cols=80  Identities=11%  Similarity=0.060  Sum_probs=43.0

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-CCccccccceEEeeeeecChHHHHHHHhCCCccceee
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLS  167 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  167 (285)
                      ++++.+++..  .... ...|..+..+++|++|++++|.+.. +..-+++|++|++.++.++.-. ...+..+++|+.|+
T Consensus        78 ~~L~~L~L~~--n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           78 QHLYALVLVN--NKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIE  153 (332)
T ss_dssp             TTCCEEECCS--SCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEE
T ss_pred             CCCcEEECCC--CccC-ccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccC-HhHhCCCccCCEEE
Confidence            3566666554  2111 1123344456777777777776554 2223367777777776553211 11245567777777


Q ss_pred             eecCC
Q 041569          168 ISHCH  172 (285)
Q Consensus       168 l~~c~  172 (285)
                      ++++.
T Consensus       154 l~~n~  158 (332)
T 2ft3_A          154 MGGNP  158 (332)
T ss_dssp             CCSCC
T ss_pred             CCCCc
Confidence            77653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.54  E-value=1.2e-07  Score=85.10  Aligned_cols=77  Identities=16%  Similarity=0.226  Sum_probs=37.6

Q ss_pred             CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccC
Q 041569          182 NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGAS  251 (285)
Q Consensus       182 ~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~  251 (285)
                      ++|+.|++.++. +..+.   + ..++|++|+++++.+.      +...++|+.++++...+.....       ..+..+
T Consensus       299 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l  370 (455)
T 3v47_A          299 TDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD-------QSFLGL  370 (455)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT-------TTTTTC
T ss_pred             CCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh-------hhcccc
Confidence            455666665552 22221   1 3456666666665421      1123455556555543332222       223456


Q ss_pred             CCceEEEEEeCCCcc
Q 041569          252 SQIERLCIDFSSVET  266 (285)
Q Consensus       252 ~~L~~L~L~~~~~~~  266 (285)
                      ++|+.|+|+.+....
T Consensus       371 ~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          371 PNLKELALDTNQLKS  385 (455)
T ss_dssp             TTCCEEECCSSCCSC
T ss_pred             ccccEEECCCCcccc
Confidence            666666666665554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.54  E-value=1e-07  Score=87.64  Aligned_cols=166  Identities=14%  Similarity=0.131  Sum_probs=111.3

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE  164 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  164 (285)
                      +.++.++++.  .... ...|..+..+++|++|++++|.+..    ....+++|++|+|+++.++...- ..+..+++|+
T Consensus        26 ~~L~~L~Ls~--n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~  101 (549)
T 2z81_A           26 AAMKSLDLSF--NKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLK  101 (549)
T ss_dssp             TTCCEEECCS--SCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCC
T ss_pred             CCccEEECcC--CccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCc
Confidence            4688888776  2211 2234456678999999999997765    23468999999999998754322 2356899999


Q ss_pred             eeeeecCCCcCeEE----Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEee------ecCCCcccceec
Q 041569          165 DLSISHCHSLGRIM----ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIPI------ISTNALCPWNVT  229 (285)
Q Consensus       165 ~L~l~~c~~~~~~~----i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~~------~~~~~L~~l~i~  229 (285)
                      +|++++|. ++.+.    +.. ++|++|++.++.....+.   + ..++|++|++.++.+.-      ...++|+++++.
T Consensus       102 ~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          102 YLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH  180 (549)
T ss_dssp             EEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             EEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence            99999985 33221    222 799999999986445543   2 46889999999887432      123456777776


Q ss_pred             cccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569          230 LDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET  266 (285)
Q Consensus       230 ~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~  266 (285)
                      .......+       ..+++.+++|+.|+++.+....
T Consensus       181 ~n~~~~~~-------~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          181 LSESAFLL-------EIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             CSBSTTHH-------HHHHHSTTTBSEEEEESCBCTT
T ss_pred             cCcccccc-------hhhHhhcccccEEEccCCcccc
Confidence            53332211       1345668899999998776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.54  E-value=1.8e-08  Score=86.18  Aligned_cols=188  Identities=14%  Similarity=0.132  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHHCCCceEEEEeeeCCCccccCCccc--cCcCCccEEEEcCeeecC--C------CccccccceEEeeee
Q 041569           77 PLFDKWIELATENGLEVLDFMVIADENTYYALPQTI--FSAKLLTSLKLVGCKLEL--P------SFTCAHLKKLLLSEF  146 (285)
Q Consensus        77 ~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~--~------~~~~~~L~~L~L~~~  146 (285)
                      ..+..........+++++++...  .. ....|..+  ...++|++|+|++|.+..  .      ...+++|++|+|.++
T Consensus        79 ~~~~~~~~~~~~~~L~~L~l~~n--~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n  155 (310)
T 4glp_A           79 QLLVGALRVLAYSRLKELTLEDL--KI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA  155 (310)
T ss_dssp             HHHHHHHHHHHHSCCCEEEEESC--CC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred             HHHHHHHHhcccCceeEEEeeCC--Ee-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence            34445555545578999999873  21 12333333  456778888888876653  1      124777888888877


Q ss_pred             ecChHHHHHHHhCCCccceeeeecCCCcCe------EEEcc-CCcceEEEeecCCCceEE-------EeCCCccEEEEee
Q 041569          147 PLNDRELHHLISKCPLLEDLSISHCHSLGR------IMISS-NKLEHLLISSCYGLNALD-------VDAPRLLSFIFDL  212 (285)
Q Consensus       147 ~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~------~~i~~-~~L~~L~l~~~~~~~~~~-------~~~p~L~~l~~~~  212 (285)
                      .++... ...+..+++|++|+++++.-.+.      ..+.. ++|++|++.+|. +..+.       -..++|++|++++
T Consensus       156 ~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~  233 (310)
T 4glp_A          156 HSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSH  233 (310)
T ss_dssp             SSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred             Ccchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCC
Confidence            663211 11244677788888877752211      11112 677777777774 32221       1347777777777


Q ss_pred             CcEee------ecC---CCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhe
Q 041569          213 NPIPI------IST---NALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKL  279 (285)
Q Consensus       213 ~~~~~------~~~---~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L  279 (285)
                      +.+.-      ...   ++|++++++...+...+...          .++|+.|+|+.+.+...+....+.+|+.|
T Consensus       234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----------~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L  299 (310)
T 4glp_A          234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL----------PAKLRVLDLSSNRLNRAPQPDELPEVDNL  299 (310)
T ss_dssp             SCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC----------CSCCSCEECCSCCCCSCCCTTSCCCCSCE
T ss_pred             CCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh----------cCCCCEEECCCCcCCCCchhhhCCCccEE
Confidence            66321      111   46777777665555443311          26778888877777654333333334443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.53  E-value=1.2e-07  Score=87.50  Aligned_cols=116  Identities=19%  Similarity=0.182  Sum_probs=62.3

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-CCccccccceEEeeeeecChHHHHHHHhCCCccceee
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLS  167 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  167 (285)
                      ++++.+++...    ....+|..+..+ +|++|++++|.+.. +...+++|++|.+.++......-   ...+|+|+.|+
T Consensus       282 ~~L~~L~l~~~----~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~  353 (570)
T 2z63_A          282 TNVSSFSLVSV----TIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLD  353 (570)
T ss_dssp             TTCSEEEEESC----EECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC---CCBCTTCCEEE
T ss_pred             CcccEEEecCc----cchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc---cccCCCCCEEe
Confidence            45666666552    122455555555 77777777776654 33456667777776664421100   04567777777


Q ss_pred             eecCCCcCeEE-Ec-----cCCcceEEEeecCCCceEE--E-eCCCccEEEEeeCc
Q 041569          168 ISHCHSLGRIM-IS-----SNKLEHLLISSCYGLNALD--V-DAPRLLSFIFDLNP  214 (285)
Q Consensus       168 l~~c~~~~~~~-i~-----~~~L~~L~l~~~~~~~~~~--~-~~p~L~~l~~~~~~  214 (285)
                      +++|. ++... ..     .++|+.|++.+|. +..+.  + .+++|++|++.++.
T Consensus       354 l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~  407 (570)
T 2z63_A          354 LSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN  407 (570)
T ss_dssp             CCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE
T ss_pred             CcCCc-cCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCc
Confidence            76664 22221 11     1566677666663 22221  2 45666666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.53  E-value=4.8e-09  Score=89.47  Aligned_cols=164  Identities=16%  Similarity=0.129  Sum_probs=84.2

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-C----CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-P----SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~----~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      ++++.++++..    ....++..+..+++|++|+++++.+.. .    ...+++|++|++.++.++... ...+..+++|
T Consensus        78 ~~L~~L~Ls~n----~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L  152 (306)
T 2z66_A           78 TSLKYLDLSFN----GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSL  152 (306)
T ss_dssp             SCCCEEECCSC----SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTC
T ss_pred             cccCEEECCCC----ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-hhhcccCcCC
Confidence            45666655441    122344445556677777777765544 1    234667777777766542111 1124456777


Q ss_pred             ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCcccceec
Q 041569          164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNVT  229 (285)
Q Consensus       164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~  229 (285)
                      ++|+++++.-.+...   +.. ++|+.|+++++. +..+.   + ..|+|++|+++++.+.      +...++|+.++++
T Consensus       153 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  231 (306)
T 2z66_A          153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  231 (306)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred             CEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence            777777664211111   111 567777777663 33331   1 3466777777666521      1223466666666


Q ss_pred             cccCCCCChhhHHHHHHHhccC-CCceEEEEEeCCCc
Q 041569          230 LDCDSNLDCDWFLSLKEFLGAS-SQIERLCIDFSSVE  265 (285)
Q Consensus       230 ~~~~~~~~~~~~~~l~~~l~~~-~~L~~L~L~~~~~~  265 (285)
                      ...+.....       ..+..+ ++|+.|+|+.+...
T Consensus       232 ~N~l~~~~~-------~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          232 LNHIMTSKK-------QELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             TSCCCBCSS-------SSCCCCCTTCCEEECTTCCEE
T ss_pred             CCCCcccCH-------HHHHhhhccCCEEEccCCCee
Confidence            544433322       123334 36777777655554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.52  E-value=8.2e-08  Score=81.42  Aligned_cols=114  Identities=20%  Similarity=0.195  Sum_probs=55.6

Q ss_pred             ccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-Ecc-CCcceE
Q 041569          112 IFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-ISS-NKLEHL  187 (285)
Q Consensus       112 ~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~-~~L~~L  187 (285)
                      +..+++|+.|++++|.+..  ....+++|++|+++++.+++-   .-+..+++|+.|++++|. ++.+. +.. ++|+.|
T Consensus        86 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L  161 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTL  161 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEE
T ss_pred             cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCc-CCcchhhccCCCCCEE
Confidence            4445666666666665544  223456666666666655331   123455666666666553 22221 111 566666


Q ss_pred             EEeecCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceecc
Q 041569          188 LISSCYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTL  230 (285)
Q Consensus       188 ~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~  230 (285)
                      ++++|. +..+. + ..++|+.|+++++.+.    +...++|+.+++..
T Consensus       162 ~L~~N~-l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          162 SLEDNQ-ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS  209 (291)
T ss_dssp             ECCSSC-CCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred             EccCCc-cccchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcC
Confidence            666654 11110 2 3456666666655421    12233555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.49  E-value=1.6e-08  Score=89.21  Aligned_cols=173  Identities=12%  Similarity=0.058  Sum_probs=114.2

Q ss_pred             CCCceEEEEeeeCCCcc---ccCCccccCcCCccEEEEcCeeecC-----CC---ccc---------cccceEEeeeeec
Q 041569           89 NGLEVLDFMVIADENTY---YALPQTIFSAKLLTSLKLVGCKLEL-----PS---FTC---------AHLKKLLLSEFPL  148 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~-----~~---~~~---------~~L~~L~L~~~~~  148 (285)
                      ++++.|+++..  ....   ..++..+..+++|++|+|++|.+..     .+   ..+         ++|++|+|.++.+
T Consensus        94 ~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A           94 PKLHTVRLSDN--AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             TTCCEEECCSC--CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             CcccEEECCCC--cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            57888877663  2221   2355566678999999999988753     11   112         8999999999988


Q ss_pred             ChHHHH---HHHhCCCccceeeeecCCCcCeE--------EEcc-CCcceEEEeecCCC-----ceEE---EeCCCccEE
Q 041569          149 NDRELH---HLISKCPLLEDLSISHCHSLGRI--------MISS-NKLEHLLISSCYGL-----NALD---VDAPRLLSF  208 (285)
Q Consensus       149 ~~~~l~---~l~~~cp~Le~L~l~~c~~~~~~--------~i~~-~~L~~L~l~~~~~~-----~~~~---~~~p~L~~l  208 (285)
                      ++..+.   ..+..+++|+.|++++|. ++..        .+.. ++|+.|++.+|. +     ..+.   ...|+|++|
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEE
Confidence            766555   456689999999999885 3311        1122 789999999885 3     2221   256899999


Q ss_pred             EEeeCcEee------------ecCCCcccceeccccCCCCChhhHHHHHHHh-ccCCCceEEEEEeCCCccCC
Q 041569          209 IFDLNPIPI------------ISTNALCPWNVTLDCDSNLDCDWFLSLKEFL-GASSQIERLCIDFSSVETNS  268 (285)
Q Consensus       209 ~~~~~~~~~------------~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l-~~~~~L~~L~L~~~~~~~~~  268 (285)
                      +++++.+.-            ...++|+.++++...+..   .....+...+ ..+++|+.|+++.+......
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~---~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL---DAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH---HHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH---HHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            998887421            125788888887644422   1112233444 66899999999887776533

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.49  E-value=9.9e-08  Score=85.71  Aligned_cols=81  Identities=14%  Similarity=0.123  Sum_probs=46.8

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----C--CccccccceEEeeeeecChHHHHHHHhCCCc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----P--SFTCAHLKKLLLSEFPLNDRELHHLISKCPL  162 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~  162 (285)
                      +++++|+++.  ... ....|..+..+++|++|++++|.+..    .  ...+++|++|+|.++.++...-..++..+++
T Consensus        79 ~~L~~L~Ls~--n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  155 (455)
T 3v47_A           79 SSLIILKLDY--NQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR  155 (455)
T ss_dssp             TTCCEEECTT--CTT-CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred             ccCCEEeCCC--Ccc-CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence            4566666554  111 11234445556777777777776653    1  3456777777777776643322223556777


Q ss_pred             cceeeeecCC
Q 041569          163 LEDLSISHCH  172 (285)
Q Consensus       163 Le~L~l~~c~  172 (285)
                      |++|+++++.
T Consensus       156 L~~L~L~~n~  165 (455)
T 3v47_A          156 FHVLDLTFNK  165 (455)
T ss_dssp             CCEEECTTCC
T ss_pred             ccEEeCCCCc
Confidence            7777777663

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.48  E-value=3.1e-08  Score=92.46  Aligned_cols=135  Identities=18%  Similarity=0.158  Sum_probs=93.4

Q ss_pred             HCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569           88 ENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED  165 (285)
Q Consensus        88 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  165 (285)
                      .++++.|+++.  +.  ...++. +..+++|+.|.|++|.+..  ....+++|+.|+|.++.+++-   .-+..+|+|+.
T Consensus        64 l~~L~~L~Ls~--N~--l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~  135 (605)
T 1m9s_A           64 LPNVTKLFLNG--NK--LTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLES  135 (605)
T ss_dssp             CTTCCEEECTT--SC--CCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC---GGGGGCTTCSE
T ss_pred             CCCCCEEEeeC--CC--CCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC---ccccCCCccCE
Confidence            36788888765  22  222333 6678999999999998766  335689999999999988542   12667899999


Q ss_pred             eeeecCCCcCeEE-Ecc-CCcceEEEeecCCCceE-EE-eCCCccEEEEeeCcEe----eecCCCcccceecccc
Q 041569          166 LSISHCHSLGRIM-ISS-NKLEHLLISSCYGLNAL-DV-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDC  232 (285)
Q Consensus       166 L~l~~c~~~~~~~-i~~-~~L~~L~l~~~~~~~~~-~~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~  232 (285)
                      |++++|. ++.+. +.. ++|+.|++++|. +..+ .+ .+|+|+.|+++++.+.    +...++|+.+++....
T Consensus       136 L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          136 LYLGNNK-ITDITVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             EECCSSC-CCCCGGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred             EECCCCc-cCCchhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence            9999885 33331 122 889999999986 2221 13 5789999999988742    2334578888876643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.48  E-value=7.9e-08  Score=82.36  Aligned_cols=165  Identities=17%  Similarity=0.042  Sum_probs=105.5

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE  164 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  164 (285)
                      +.++.++++.  ...-...+|..+..+++|++|++++|.+..    ....+++|++|++.++.++.. +...+..+++|+
T Consensus        76 ~~L~~L~L~~--~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~  152 (313)
T 1ogq_A           76 PYLNFLYIGG--INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLV  152 (313)
T ss_dssp             TTCSEEEEEE--ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCC
T ss_pred             CCCCeeeCCC--CCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCC
Confidence            5788888873  112223567777778899999999887753    234678899999988876421 112245688999


Q ss_pred             eeeeecCCCcCeEE--Ecc-C-CcceEEEeecCCCce-EE--EeCCCccEEEEeeCcEe------eecCCCcccceeccc
Q 041569          165 DLSISHCHSLGRIM--ISS-N-KLEHLLISSCYGLNA-LD--VDAPRLLSFIFDLNPIP------IISTNALCPWNVTLD  231 (285)
Q Consensus       165 ~L~l~~c~~~~~~~--i~~-~-~L~~L~l~~~~~~~~-~~--~~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~  231 (285)
                      +|+++++.-...+.  +.. + +|+.|++.++. +.. +.  +....|+.|+++++.+.      +...++|+.++++..
T Consensus       153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  231 (313)
T 1ogq_A          153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             eEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence            99998875211111  111 3 88899888874 221 11  11223889998888743      233457888888765


Q ss_pred             cCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          232 CDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       232 ~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      .+.....        .+..+++|+.|+++.+...
T Consensus       232 ~l~~~~~--------~~~~l~~L~~L~Ls~N~l~  257 (313)
T 1ogq_A          232 SLAFDLG--------KVGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             EECCBGG--------GCCCCTTCCEEECCSSCCE
T ss_pred             ceeeecC--------cccccCCCCEEECcCCccc
Confidence            4432211        1466899999999988876

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.46  E-value=3.4e-07  Score=85.72  Aligned_cols=112  Identities=25%  Similarity=0.180  Sum_probs=52.3

Q ss_pred             CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecCCCccccccceEEeeeeecChHHHHHHHhCCCccceeeee
Q 041569           90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSIS  169 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~  169 (285)
                      +++.++++.  .  ....+|..+.  ++|+.|++++|.+...+..+++|++|+|+++.++.     +-..+++|++|+++
T Consensus        41 ~l~~L~ls~--n--~L~~lp~~l~--~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGE--S--GLTTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS-----LPVLPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCS--S--CCSCCCSCCC--TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSC-----CCCCCTTCCEEEEC
T ss_pred             CCcEEEecC--C--CcCccChhhC--CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCc-----CCCCCCCCCEEECc
Confidence            455555543  1  1224444333  56666666666555422245666666666665531     11145666666666


Q ss_pred             cCCCcCeEEEccCCcceEEEeecCCCceEEEeCCCccEEEEeeCc
Q 041569          170 HCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNP  214 (285)
Q Consensus       170 ~c~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~~  214 (285)
                      +|. ++.+.-..++|+.|++.++. +..+....|+|++|+++++.
T Consensus       110 ~N~-l~~l~~~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~  152 (622)
T 3g06_A          110 SNP-LTHLPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQ  152 (622)
T ss_dssp             SCC-CCCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred             CCc-CCCCCCCCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCCc
Confidence            553 22111122445555555442 22222233455555554443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.46  E-value=1.1e-07  Score=81.86  Aligned_cols=96  Identities=16%  Similarity=0.187  Sum_probs=61.0

Q ss_pred             CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      +.++.++++.  ..  ...++. .+..+++|++|++++|.+..    ....+++|++|++.++.++.-.    ...+++|
T Consensus        52 ~~l~~L~L~~--n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~L  123 (330)
T 1xku_A           52 PDTALLDLQN--NK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTL  123 (330)
T ss_dssp             TTCCEEECCS--SC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC----SSCCTTC
T ss_pred             CCCeEEECCC--Cc--CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC----hhhcccc
Confidence            4677777665  22  223333 45568999999999987765    2346899999999998764211    1224899


Q ss_pred             ceeeeecCCCcCeEEE---cc-CCcceEEEeecC
Q 041569          164 EDLSISHCHSLGRIMI---SS-NKLEHLLISSCY  193 (285)
Q Consensus       164 e~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~  193 (285)
                      ++|+++++. ++.+..   .. ++|+.|++.++.
T Consensus       124 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~  156 (330)
T 1xku_A          124 QELRVHENE-ITKVRKSVFNGLNQMIVVELGTNP  156 (330)
T ss_dssp             CEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSC
T ss_pred             cEEECCCCc-ccccCHhHhcCCccccEEECCCCc
Confidence            999999874 222211   11 566666666653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.46  E-value=6.1e-08  Score=90.35  Aligned_cols=80  Identities=21%  Similarity=0.181  Sum_probs=38.7

Q ss_pred             CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC------CCccccccceEEeeeeecChHHHHHHHhCCC
Q 041569           89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL------PSFTCAHLKKLLLSEFPLNDRELHHLISKCP  161 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~------~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp  161 (285)
                      ++++.+++...  ... ..++. .+..+++|+.|++++|.+..      ....+++|++|++.++.++... ...+..++
T Consensus       325 ~~L~~L~l~~n--~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~  400 (606)
T 3t6q_A          325 PSLTHLSIKGN--TKR-LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK-TEAFKECP  400 (606)
T ss_dssp             TTCSEEECCSC--SSC-CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC-TTTTTTCT
T ss_pred             CcCCEEECCCC--Ccc-cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC-HHHhcCCc
Confidence            46666666542  111 12222 23445666666666665432      1234566666666665442110 11133456


Q ss_pred             ccceeeeecCC
Q 041569          162 LLEDLSISHCH  172 (285)
Q Consensus       162 ~Le~L~l~~c~  172 (285)
                      +|+.|++++|.
T Consensus       401 ~L~~L~l~~n~  411 (606)
T 3t6q_A          401 QLELLDLAFTR  411 (606)
T ss_dssp             TCSEEECTTCC
T ss_pred             cCCeEECCCCc
Confidence            66666666553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.44  E-value=1.1e-07  Score=88.78  Aligned_cols=162  Identities=17%  Similarity=0.193  Sum_probs=106.7

Q ss_pred             CCCceEEEEeeeCCCccccCC-ccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALP-QTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      ++++.|++..  ..  ...++ ..+..+++|+.|+|++|.+.. +   ...+++|++|+|.++.++.-. ..++..+++|
T Consensus        75 ~~L~~L~L~~--n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L  149 (597)
T 3oja_B           75 RQVELLNLND--LQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKL  149 (597)
T ss_dssp             CCCSEEECTT--SC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred             CCCcEEECCC--CC--CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC-HHHhccCCCC
Confidence            5788887765  22  12233 345567899999999887765 2   246889999999988774211 1224678899


Q ss_pred             ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEEE-eCCCccEEEEeeCcEe-eecCCCcccceeccccCCCCC
Q 041569          164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALDV-DAPRLLSFIFDLNPIP-IISTNALCPWNVTLDCDSNLD  237 (285)
Q Consensus       164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~~-~~p~L~~l~~~~~~~~-~~~~~~L~~l~i~~~~~~~~~  237 (285)
                      +.|++++|. ++.+.   +.. ++|+.|++.++. +..+.. ..|+|+.|.+.++.+. +...+.|+.++++...+...+
T Consensus       150 ~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~  227 (597)
T 3oja_B          150 TTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR  227 (597)
T ss_dssp             CEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred             CEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence            999999885 33322   222 789999998884 444444 5688999988887743 344457888888765544333


Q ss_pred             hhhHHHHHHHhccCCCceEEEEEeCCCccC
Q 041569          238 CDWFLSLKEFLGASSQIERLCIDFSSVETN  267 (285)
Q Consensus       238 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~  267 (285)
                      ..          ..++|+.|+|+.+.....
T Consensus       228 ~~----------~~~~L~~L~L~~n~l~~~  247 (597)
T 3oja_B          228 GP----------VNVELTILKLQHNNLTDT  247 (597)
T ss_dssp             CS----------CCSCCCEEECCSSCCCCC
T ss_pred             cc----------cCCCCCEEECCCCCCCCC
Confidence            21          236899999988777653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.44  E-value=3.8e-08  Score=94.57  Aligned_cols=146  Identities=19%  Similarity=0.143  Sum_probs=84.1

Q ss_pred             cccCcCCccEEEEcCeeecC--C---CccccccceEEeeeeecChHHHH--HHHhCCCccceeeeecCCCcCeEEEcc-C
Q 041569          111 TIFSAKLLTSLKLVGCKLEL--P---SFTCAHLKKLLLSEFPLNDRELH--HLISKCPLLEDLSISHCHSLGRIMISS-N  182 (285)
Q Consensus       111 ~~~~~~~L~~L~L~~~~~~~--~---~~~~~~L~~L~L~~~~~~~~~l~--~l~~~cp~Le~L~l~~c~~~~~~~i~~-~  182 (285)
                      .+..+++|++|+|++|.+..  +   ...+++|++|+|.++.++.....  ..+..|++|++|++++|.-........ +
T Consensus       121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~  200 (768)
T 3rgz_A          121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV  200 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCT
T ss_pred             HHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCC
Confidence            55567777777777776543  1   13567777777777766332222  225677788888877774222222222 6


Q ss_pred             CcceEEEeecCCCceEE-E-eCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCc
Q 041569          183 KLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQI  254 (285)
Q Consensus       183 ~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L  254 (285)
                      +|++|++.+|.-...+. + ..++|++|++.++.+.      +...++|+.++++...+......         ..+++|
T Consensus       201 ~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---------~~l~~L  271 (768)
T 3rgz_A          201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---------LPLKSL  271 (768)
T ss_dssp             TCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC---------CCCTTC
T ss_pred             cCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc---------cccCCC
Confidence            78888887775111111 2 4677888887777632      23345677777765333211110         146778


Q ss_pred             eEEEEEeCCCc
Q 041569          255 ERLCIDFSSVE  265 (285)
Q Consensus       255 ~~L~L~~~~~~  265 (285)
                      +.|++..+...
T Consensus       272 ~~L~L~~n~l~  282 (768)
T 3rgz_A          272 QYLSLAENKFT  282 (768)
T ss_dssp             CEEECCSSEEE
T ss_pred             CEEECcCCccC
Confidence            88877766554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.43  E-value=4.2e-07  Score=83.11  Aligned_cols=165  Identities=15%  Similarity=0.106  Sum_probs=111.4

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecCh-HHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLND-RELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~L  163 (285)
                      .+++.++++..  ......++   ..+++|++|++++|.+..    ....+++|++|+++++.++. ..+...+..+++|
T Consensus       302 ~~L~~L~l~~n--~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L  376 (520)
T 2z7x_B          302 MNIKNFTVSGT--RMVHMLCP---SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL  376 (520)
T ss_dssp             CCCSEEEEESS--CCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC
T ss_pred             CceeEEEcCCC--ccccccch---hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC
Confidence            46888887762  22211111   357899999999998765    22468999999999998864 3455567889999


Q ss_pred             ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEEEe-CCCccEEEEeeCcEe-----eecCCCcccceeccccC
Q 041569          164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALDVD-APRLLSFIFDLNPIP-----IISTNALCPWNVTLDCD  233 (285)
Q Consensus       164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~~~-~p~L~~l~~~~~~~~-----~~~~~~L~~l~i~~~~~  233 (285)
                      +.|++++|.-...+.   +.. ++|+.|++++|.-...+... .++|+.|+++++.+.     +...++|++++++...+
T Consensus       377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l  456 (520)
T 2z7x_B          377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL  456 (520)
T ss_dssp             CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcC
Confidence            999999886322122   122 78999999998511111111 278999999888743     22345788888877666


Q ss_pred             CCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          234 SNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       234 ~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      ...+..       .+..+++|+.|+++.+...
T Consensus       457 ~~l~~~-------~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          457 KSVPDG-------IFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             CCCCTT-------TTTTCTTCCEEECCSSCBC
T ss_pred             CccCHH-------HhccCCcccEEECcCCCCc
Confidence            655442       4567888999988777664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.43  E-value=5.4e-08  Score=82.88  Aligned_cols=167  Identities=17%  Similarity=0.099  Sum_probs=112.1

Q ss_pred             CCCceEEEEeeeCCCcc-ccCCccccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569           89 NGLEVLDFMVIADENTY-YALPQTIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE  164 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  164 (285)
                      ++++.+++..  ..... ...+.....+++|+.|++++|.+..   ....+++|++|++.++.++...-...+..+++|+
T Consensus        52 ~~L~~L~L~~--n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  129 (306)
T 2z66_A           52 TQLTKLSLSS--NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  129 (306)
T ss_dssp             TTCSEEECCS--SCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC
T ss_pred             ccCCEEECCC--CccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCC
Confidence            4688888765  22211 1224455568999999999997655   2346899999999998774322212356789999


Q ss_pred             eeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCce--EE--E-eCCCccEEEEeeCcEee------ecCCCcccceec
Q 041569          165 DLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNA--LD--V-DAPRLLSFIFDLNPIPI------ISTNALCPWNVT  229 (285)
Q Consensus       165 ~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~--~~--~-~~p~L~~l~~~~~~~~~------~~~~~L~~l~i~  229 (285)
                      .|++++|. ++...   +.. ++|+.|++.++. +..  +.  + ..++|++|+++++.+.-      ...++|+.++++
T Consensus       130 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  207 (306)
T 2z66_A          130 YLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS  207 (306)
T ss_dssp             EEECTTSC-CEECSTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             EEECCCCc-CCccchhhcccCcCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence            99999885 22111   112 789999998885 221  21  2 46899999999887422      234578888888


Q ss_pred             cccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569          230 LDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET  266 (285)
Q Consensus       230 ~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~  266 (285)
                      ...+...+..       .+..+++|+.|+++.+....
T Consensus       208 ~N~l~~~~~~-------~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          208 HNNFFSLDTF-------PYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             TSCCSBCCSG-------GGTTCTTCCEEECTTSCCCB
T ss_pred             CCccCccChh-------hccCcccCCEeECCCCCCcc
Confidence            7666554432       24678999999998887765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.43  E-value=1.1e-07  Score=81.45  Aligned_cols=156  Identities=16%  Similarity=0.167  Sum_probs=111.2

Q ss_pred             CcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEccCCcceEEE
Q 041569          114 SAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLI  189 (285)
Q Consensus       114 ~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~~~L~~L~l  189 (285)
                      .+++|++|+|++|.+.. .   ...+++|++|+|.++.++...  . +..+++|++|++++|. ++.+. ..++|+.|++
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l  106 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL-VGPSIETLHA  106 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc-CCCCcCEEEC
Confidence            36799999999998776 2   246899999999999773211  1 6789999999999885 44333 2289999999


Q ss_pred             eecCCCceEEE-eCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeC
Q 041569          190 SSCYGLNALDV-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFS  262 (285)
Q Consensus       190 ~~~~~~~~~~~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~  262 (285)
                      .++ .+..+.. ..++|++|++.++.+.      +...++|+.++++...+.....      ..+...+++|+.|+++.+
T Consensus       107 ~~n-~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          107 ANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF------AELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             CSS-CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG------GGGGGGTTTCCEEECTTS
T ss_pred             CCC-ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH------HHHhhccCcCCEEECCCC
Confidence            998 4555554 6789999999998742      2234678888887765544332      134457899999999888


Q ss_pred             CCccCCCchhhhhhhheee
Q 041569          263 SVETNSEDATLHFLYKLRL  281 (285)
Q Consensus       263 ~~~~~~~~~~f~~L~~L~l  281 (285)
                      .....+....+.+|+.|.+
T Consensus       180 ~l~~~~~~~~l~~L~~L~L  198 (317)
T 3o53_A          180 FIYDVKGQVVFAKLKTLDL  198 (317)
T ss_dssp             CCCEEECCCCCTTCCEEEC
T ss_pred             cCcccccccccccCCEEEC
Confidence            8876443333555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.43  E-value=5.8e-08  Score=75.21  Aligned_cols=122  Identities=23%  Similarity=0.112  Sum_probs=76.5

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL  166 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  166 (285)
                      ++++++.+..  +......+|..+..+++|+.|++++|.+..  ....+++|++|+++++.++.. +......+++|+.|
T Consensus        24 ~~L~~L~l~~--n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDN--CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCS--CBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred             ccCCEEECCC--CCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence            4688887776  333323566666678889999999887765  334578899999998877542 33445568899999


Q ss_pred             eeecCCCcCeEE----Ecc-CCcceEEEeecC--CCce----EEEeCCCccEEEEeeCc
Q 041569          167 SISHCHSLGRIM----ISS-NKLEHLLISSCY--GLNA----LDVDAPRLLSFIFDLNP  214 (285)
Q Consensus       167 ~l~~c~~~~~~~----i~~-~~L~~L~l~~~~--~~~~----~~~~~p~L~~l~~~~~~  214 (285)
                      ++++|. ++.+.    +.. ++|+.|++.++.  ....    .....|+|++|++.++.
T Consensus       101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          101 NLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             ECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             eccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            998884 33321    111 667777777664  1111    11134566666555543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.42  E-value=4.2e-07  Score=83.87  Aligned_cols=77  Identities=19%  Similarity=0.114  Sum_probs=47.8

Q ss_pred             CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHH-HHHHHhCCCcccee
Q 041569           90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRE-LHHLISKCPLLEDL  166 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~-l~~l~~~cp~Le~L  166 (285)
                      +++++++...  ...  .+|.  ..+++|+.|.++++....  ....+++|++|++.++.++... ....+..+++|+.|
T Consensus       305 ~L~~L~l~~n--~~~--~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L  378 (570)
T 2z63_A          305 GWQHLELVNC--KFG--QFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL  378 (570)
T ss_dssp             CCSEEEEESC--BCS--SCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEE
T ss_pred             CccEEeeccC--ccc--ccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEE
Confidence            6778877762  222  4443  356788888888876554  3356788888888877663221 11224467777777


Q ss_pred             eeecCC
Q 041569          167 SISHCH  172 (285)
Q Consensus       167 ~l~~c~  172 (285)
                      ++++|.
T Consensus       379 ~l~~n~  384 (570)
T 2z63_A          379 DLSFNG  384 (570)
T ss_dssp             ECCSCS
T ss_pred             ECCCCc
Confidence            777764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.42  E-value=3.4e-08  Score=84.60  Aligned_cols=175  Identities=15%  Similarity=0.150  Sum_probs=101.0

Q ss_pred             HCCCceEEEEeeeCCCccccCCccc--cCcCCccEEEEcCeeecC-CC--ccc-----cccceEEeeeeecChHHHHHHH
Q 041569           88 ENGLEVLDFMVIADENTYYALPQTI--FSAKLLTSLKLVGCKLEL-PS--FTC-----AHLKKLLLSEFPLNDRELHHLI  157 (285)
Q Consensus        88 ~~~l~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~-~~--~~~-----~~L~~L~L~~~~~~~~~l~~l~  157 (285)
                      ..++++++++..  ... ...|..+  ...++|++|++++|.+.. +.  ..+     ++|++|+|.++.++...- ..+
T Consensus        94 l~~L~~L~L~~n--~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-~~~  169 (312)
T 1wwl_A           94 ISGLQELTLENL--EVT-GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC-EQV  169 (312)
T ss_dssp             TSCCCEEEEEEE--BCB-SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT-TTC
T ss_pred             cCCccEEEccCC--ccc-chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH-HHh
Confidence            357888877763  111 2344443  456788888888876654 11  122     778888888776632211 124


Q ss_pred             hCCCccceeeeecCCCcCeE----EE--cc-CCcceEEEeecCCCce---EE----EeCCCccEEEEeeCcEee------
Q 041569          158 SKCPLLEDLSISHCHSLGRI----MI--SS-NKLEHLLISSCYGLNA---LD----VDAPRLLSFIFDLNPIPI------  217 (285)
Q Consensus       158 ~~cp~Le~L~l~~c~~~~~~----~i--~~-~~L~~L~l~~~~~~~~---~~----~~~p~L~~l~~~~~~~~~------  217 (285)
                      ..+++|++|+++++.-.+..    .+  .. ++|++|++.++. +..   +.    ...++|++|+++++.+.-      
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  248 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS  248 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred             ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence            46778888888877522211    11  22 678888888774 331   11    134788888887776321      


Q ss_pred             -ecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569          218 -ISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR  280 (285)
Q Consensus       218 -~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~  280 (285)
                       ...++|+.++++...+..++...          .++|+.|+|+.+.+...+.   |..+++|+
T Consensus       249 ~~~l~~L~~L~Ls~N~l~~ip~~~----------~~~L~~L~Ls~N~l~~~p~---~~~l~~L~  299 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFTGLKQVPKGL----------PAKLSVLDLSYNRLDRNPS---PDELPQVG  299 (312)
T ss_dssp             CCCCTTCCEEECTTSCCSSCCSSC----------CSEEEEEECCSSCCCSCCC---TTTSCEEE
T ss_pred             hhhcCCCCEEECCCCccChhhhhc----------cCCceEEECCCCCCCCChh---HhhCCCCC
Confidence             11246777777765555443311          1688888888887776543   44444444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.42  E-value=2.2e-08  Score=93.31  Aligned_cols=146  Identities=15%  Similarity=0.068  Sum_probs=63.1

Q ss_pred             CcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeE--EEcc-CCcceE
Q 041569          114 SAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRI--MISS-NKLEHL  187 (285)
Q Consensus       114 ~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~i~~-~~L~~L  187 (285)
                      .+++|+.|++++|.+..   ....+++|++|++.++.++...-...+..+++|+.|++++|.-....  .+.. ++|+.|
T Consensus       374 ~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  453 (606)
T 3vq2_A          374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL  453 (606)
T ss_dssp             CCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             cCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence            34445555554443322   12234555555555554422111112334555555555555311100  0111 456666


Q ss_pred             EEeecCCCc-eEE--E-eCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEE
Q 041569          188 LISSCYGLN-ALD--V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERL  257 (285)
Q Consensus       188 ~l~~~~~~~-~~~--~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L  257 (285)
                      ++.+|.-.. .+.  + ..++|++|+++++.+.      +...++|+.++++...+.....       ..+..+++|+.|
T Consensus       454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L  526 (606)
T 3vq2_A          454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-------SHYNQLYSLSTL  526 (606)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG-------GGTTTCTTCCEE
T ss_pred             ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH-------HHccCCCcCCEE
Confidence            665553111 011  1 3456666666655421      1122355555555443333221       233455666666


Q ss_pred             EEEeCCCcc
Q 041569          258 CIDFSSVET  266 (285)
Q Consensus       258 ~L~~~~~~~  266 (285)
                      +|+.+....
T Consensus       527 ~l~~N~l~~  535 (606)
T 3vq2_A          527 DCSFNRIET  535 (606)
T ss_dssp             ECTTSCCCC
T ss_pred             ECCCCcCcc
Confidence            665555543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.41  E-value=1.1e-07  Score=91.29  Aligned_cols=97  Identities=24%  Similarity=0.244  Sum_probs=42.2

Q ss_pred             CcCCccEEEEcCeeecC-C------CccccccceEEeeeeecCh-HHHHHHHhCCCccceeeeecCCCcCeEE-Ecc-CC
Q 041569          114 SAKLLTSLKLVGCKLEL-P------SFTCAHLKKLLLSEFPLND-RELHHLISKCPLLEDLSISHCHSLGRIM-ISS-NK  183 (285)
Q Consensus       114 ~~~~L~~L~L~~~~~~~-~------~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~-~~  183 (285)
                      .+++|++|++++|.+.. .      ...+++|++|++.++.++. ..    ...+++|++|++++|.-...+. +.. ++
T Consensus       149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~  224 (768)
T 3rgz_A          149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPFLGDCSA  224 (768)
T ss_dssp             CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCBCTTCCS
T ss_pred             cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcccccCCC
Confidence            34555555555554432 0      2345555555555554421 11    1345555555555553211111 111 45


Q ss_pred             cceEEEeecCCCceE--EE-eCCCccEEEEeeCc
Q 041569          184 LEHLLISSCYGLNAL--DV-DAPRLLSFIFDLNP  214 (285)
Q Consensus       184 L~~L~l~~~~~~~~~--~~-~~p~L~~l~~~~~~  214 (285)
                      |++|++.+|.-...+  .+ ..++|++|++.++.
T Consensus       225 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  258 (768)
T 3rgz_A          225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ  258 (768)
T ss_dssp             CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC
T ss_pred             CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc
Confidence            555555555311010  01 34555555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.41  E-value=4.9e-07  Score=84.62  Aligned_cols=53  Identities=23%  Similarity=0.183  Sum_probs=22.8

Q ss_pred             CCccceeeeecCCCcCeEEEccCCcceEEEeecCCCceEEEeCCCccEEEEeeCc
Q 041569          160 CPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNP  214 (285)
Q Consensus       160 cp~Le~L~l~~c~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~~  214 (285)
                      +++|+.|++++|. ++.+.-..++|+.|.+.+|. +..+.-..++|++|+++++.
T Consensus       180 ~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~  232 (622)
T 3g06_A          180 PSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNR  232 (622)
T ss_dssp             CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSC
T ss_pred             CCCCcEEECCCCC-CCCCCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCc
Confidence            4556666666553 22211111445555555442 22222223455555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.40  E-value=1.7e-07  Score=77.60  Aligned_cols=140  Identities=12%  Similarity=0.119  Sum_probs=63.5

Q ss_pred             CCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE---cc-CCcceE
Q 041569          116 KLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI---SS-NKLEHL  187 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i---~~-~~L~~L  187 (285)
                      ++++.|+|+++.+..    ....+++|++|+|.++.++... ...+..+++|+.|+++++. ++.+..   .. ++|+.|
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  112 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKL  112 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEE
Confidence            355555555555443    1123555555555555442211 1113345555555555543 221111   11 455555


Q ss_pred             EEeecCCCceEE---E-eCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEE
Q 041569          188 LISSCYGLNALD---V-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERL  257 (285)
Q Consensus       188 ~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L  257 (285)
                      ++.++. +..+.   + ..++|+.|+++++.+.      +...++|+.++++...+...+.       ..+..+++|+.|
T Consensus       113 ~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L  184 (251)
T 3m19_A          113 YLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-------GAFDRLGKLQTI  184 (251)
T ss_dssp             ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------TTTTTCTTCCEE
T ss_pred             EcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-------HHHhCCCCCCEE
Confidence            555552 22221   1 2455666666555421      1122355555555544433332       234456666666


Q ss_pred             EEEeCCCc
Q 041569          258 CIDFSSVE  265 (285)
Q Consensus       258 ~L~~~~~~  265 (285)
                      +|+.+...
T Consensus       185 ~l~~N~~~  192 (251)
T 3m19_A          185 TLFGNQFD  192 (251)
T ss_dssp             ECCSCCBC
T ss_pred             EeeCCcee
Confidence            66655543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.39  E-value=1.6e-07  Score=78.50  Aligned_cols=139  Identities=16%  Similarity=0.096  Sum_probs=86.4

Q ss_pred             cCcCCccEEEEcCeeecC-C-CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeE-EEccCCcceEEE
Q 041569          113 FSAKLLTSLKLVGCKLEL-P-SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRI-MISSNKLEHLLI  189 (285)
Q Consensus       113 ~~~~~L~~L~L~~~~~~~-~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~-~i~~~~L~~L~l  189 (285)
                      ..+++|+.|++++|.+.. . ...+++|++|+|+++.+++-.-   +..+++|+.|+++++. ++.+ .+..++|+.|++
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L  113 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFL  113 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEEC
T ss_pred             hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCc-cCCcCccccCcccEEEc
Confidence            346777888888776655 2 2357778888888777643211   5677888888888774 2211 111167888888


Q ss_pred             eecCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCC
Q 041569          190 SSCYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSS  263 (285)
Q Consensus       190 ~~~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~  263 (285)
                      .++. +..+. + ..++|+.|+++++.+.    +...++|+.++++...+...         ..+..+++|+.|+++.+.
T Consensus       114 ~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~---------~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          114 DNNE-LRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT---------GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CSSC-CSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC---------TTSTTCCCCCEEEEEEEE
T ss_pred             cCCc-cCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch---------HHhccCCCCCEEeCCCCc
Confidence            7774 22222 2 4677888888777632    22345777777766554433         235668888888887665


Q ss_pred             Cc
Q 041569          264 VE  265 (285)
Q Consensus       264 ~~  265 (285)
                      ..
T Consensus       184 ~~  185 (263)
T 1xeu_A          184 CV  185 (263)
T ss_dssp             EE
T ss_pred             cc
Confidence            44

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.39  E-value=2.2e-07  Score=77.86  Aligned_cols=121  Identities=21%  Similarity=0.278  Sum_probs=80.7

Q ss_pred             CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      ++++.++++.  ..  ...++. .+..+++|++|++++|.+..    ....+++|++|+|.++.++.... ..+..+++|
T Consensus        28 ~~l~~L~ls~--n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSF--NP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTT--CC--CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTC
T ss_pred             CCccEEECCC--Cc--ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccc
Confidence            4688887765  22  222333 45567899999999987654    23468899999999987743221 124678999


Q ss_pred             ceeeeecCCC--cCeEEEcc-CCcceEEEeecCCCceEE----E-eCCCccEEEEeeCcE
Q 041569          164 EDLSISHCHS--LGRIMISS-NKLEHLLISSCYGLNALD----V-DAPRLLSFIFDLNPI  215 (285)
Q Consensus       164 e~L~l~~c~~--~~~~~i~~-~~L~~L~l~~~~~~~~~~----~-~~p~L~~l~~~~~~~  215 (285)
                      +.|++.++.-  +....+.. ++|+.|++.++. +..+.    + ..++|++|+++++.+
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCC
Confidence            9999998752  11212333 789999999885 33221    2 468999999988763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.39  E-value=4.2e-07  Score=88.23  Aligned_cols=22  Identities=9%  Similarity=0.173  Sum_probs=15.7

Q ss_pred             hccCCCceEEEEEeCCCccCCC
Q 041569          248 LGASSQIERLCIDFSSVETNSE  269 (285)
Q Consensus       248 l~~~~~L~~L~L~~~~~~~~~~  269 (285)
                      +..+++|+.|+|+.+.....+.
T Consensus       500 ~~~l~~L~~L~Ls~N~l~~l~~  521 (844)
T 3j0a_A          500 FSHLTALRGLSLNSNRLTVLSH  521 (844)
T ss_dssp             SSSCCSCSEEEEESCCCSSCCC
T ss_pred             ccchhhhheeECCCCCCCccCh
Confidence            4567888888888877765433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.39  E-value=7.6e-08  Score=81.59  Aligned_cols=162  Identities=18%  Similarity=0.093  Sum_probs=107.4

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL  166 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  166 (285)
                      ++++.|+++.  .... ...+..+...++|+.|+|+++.+..  ....+++|++|++.++.++.  +...+..+++|+.|
T Consensus        31 ~~l~~L~L~~--N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L  105 (290)
T 1p9a_G           31 KDTTILHLSE--NLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVL  105 (290)
T ss_dssp             TTCCEEECTT--SCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEE
T ss_pred             CCCCEEEcCC--CcCC-ccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCc--CchhhccCCCCCEE
Confidence            4677777654  2211 1123345567899999999988765  34678999999999987742  22235678999999


Q ss_pred             eeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEEE----eCCCccEEEEeeCcEee------ecCCCcccceecccc
Q 041569          167 SISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALDV----DAPRLLSFIFDLNPIPI------ISTNALCPWNVTLDC  232 (285)
Q Consensus       167 ~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~~----~~p~L~~l~~~~~~~~~------~~~~~L~~l~i~~~~  232 (285)
                      +++++. ++.+.   +.. ++|+.|.+.++. +..+..    ..++|+.|++.++.+..      ...++|+.+++..+.
T Consensus       106 ~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          106 DVSFNR-LTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             ECCSSC-CCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCc-CcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence            999875 33332   122 789999999884 333321    35889999998887421      223578888887766


Q ss_pred             CCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          233 DSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       233 ~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      +..++..        +...++|+.|+|.-+...
T Consensus       184 l~~ip~~--------~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          184 LYTIPKG--------FFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCCCTT--------TTTTCCCSEEECCSCCBC
T ss_pred             CCccChh--------hcccccCCeEEeCCCCcc
Confidence            6655442        223568999888776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.38  E-value=1.1e-07  Score=89.76  Aligned_cols=79  Identities=13%  Similarity=0.042  Sum_probs=37.0

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      ..++.+++..  .... ...+..+..+++|+.|++++|.+..     ...++++|++|++.++.++...- ..+..+|+|
T Consensus       381 ~~L~~L~L~~--n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L  456 (680)
T 1ziw_A          381 SPLHILNLTK--NKIS-KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR-NSFALVPSL  456 (680)
T ss_dssp             SCCCEEECTT--SCCC-EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT-TTTTTCTTC
T ss_pred             CcCceEECCC--CCCC-eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh-hhhhcCccc
Confidence            3566665543  1111 1123333446667777777665432     12345666666666664411100 012345555


Q ss_pred             ceeeeecC
Q 041569          164 EDLSISHC  171 (285)
Q Consensus       164 e~L~l~~c  171 (285)
                      +.|++.+|
T Consensus       457 ~~L~l~~n  464 (680)
T 1ziw_A          457 QRLMLRRV  464 (680)
T ss_dssp             CEEECTTS
T ss_pred             ccchhccc
Confidence            55555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.38  E-value=1e-08  Score=90.43  Aligned_cols=149  Identities=13%  Similarity=0.093  Sum_probs=88.5

Q ss_pred             cCcCCccEEEEcCeeecC--------CCccccccceEEeeeeecChHH---HHHHHhCC---------CccceeeeecCC
Q 041569          113 FSAKLLTSLKLVGCKLEL--------PSFTCAHLKKLLLSEFPLNDRE---LHHLISKC---------PLLEDLSISHCH  172 (285)
Q Consensus       113 ~~~~~L~~L~L~~~~~~~--------~~~~~~~L~~L~L~~~~~~~~~---l~~l~~~c---------p~Le~L~l~~c~  172 (285)
                      ..+++|++|+|++|.+..        ....+++|++|+|.++.+++..   +...+..+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            457788888888877654        1124678888888888775433   33333344         788888888775


Q ss_pred             CcCeEEE--------ccCCcceEEEeecCCCce-----E---E-EeCCCccEEEEeeCcEe----------eecCCCccc
Q 041569          173 SLGRIMI--------SSNKLEHLLISSCYGLNA-----L---D-VDAPRLLSFIFDLNPIP----------IISTNALCP  225 (285)
Q Consensus       173 ~~~~~~i--------~~~~L~~L~l~~~~~~~~-----~---~-~~~p~L~~l~~~~~~~~----------~~~~~~L~~  225 (285)
                       ++...+        ..++|++|++.+|. +..     +   . ...|+|++|+++++.+.          +...++|++
T Consensus       171 -l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          171 -LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             -CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             -CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence             221111        11678888888774 220     1   1 14677888888777642          234467777


Q ss_pred             ceeccccCCCCChhhHHHHHHHhcc--CCCceEEEEEeCCCcc
Q 041569          226 WNVTLDCDSNLDCDWFLSLKEFLGA--SSQIERLCIDFSSVET  266 (285)
Q Consensus       226 l~i~~~~~~~~~~~~~~~l~~~l~~--~~~L~~L~L~~~~~~~  266 (285)
                      ++++...+...   ....+...+..  +++|+.|+|+.+.+..
T Consensus       249 L~L~~n~i~~~---~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          249 LGLNDCLLSAR---GAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             EECTTCCCCHH---HHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             EECCCCCCchh---hHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            77765443221   11223344433  7788888887776654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.37  E-value=2.7e-07  Score=78.94  Aligned_cols=162  Identities=15%  Similarity=0.070  Sum_probs=92.3

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCc-----CCccEEEEcCeeecC-C---CccccccceEEeeeeecChH-HH-HHH-
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSA-----KLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDR-EL-HHL-  156 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~-----~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~-~l-~~l-  156 (285)
                      ++++.++++..  ...  ..|..+...     ++|++|++++|.+.. .   ...+++|++|+|+++.+... .+ ..+ 
T Consensus       121 ~~L~~L~Ls~N--~l~--~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          121 PDLNILNLRNV--SWA--TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCCSEEEEESC--BCS--SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             CCccEEEccCC--CCc--chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            45777777652  211  123333333     677777777776654 1   23567777777777765332 22 221 


Q ss_pred             HhCCCccceeeeecCCCcCeE-EEc-----c-CCcceEEEeecCCCce-E--E--EeCCCccEEEEeeCcEee---ecCC
Q 041569          157 ISKCPLLEDLSISHCHSLGRI-MIS-----S-NKLEHLLISSCYGLNA-L--D--VDAPRLLSFIFDLNPIPI---ISTN  221 (285)
Q Consensus       157 ~~~cp~Le~L~l~~c~~~~~~-~i~-----~-~~L~~L~l~~~~~~~~-~--~--~~~p~L~~l~~~~~~~~~---~~~~  221 (285)
                      ...+++|++|++++|. ++.+ .+.     . ++|+.|+++++. +.. .  .  ...++|++|+++++.+..   ...+
T Consensus       197 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~  274 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA  274 (312)
T ss_dssp             TTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCS
T ss_pred             hccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCccChhhhhccC
Confidence            1567777777777764 2211 111     1 577777777775 211 1  1  134778888887776321   1115


Q ss_pred             CcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          222 ALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       222 ~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      +|+.++++...+...+.         +..+++|+.|+++.+...
T Consensus       275 ~L~~L~Ls~N~l~~~p~---------~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRNPS---------PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             EEEEEECCSSCCCSCCC---------TTTSCEEEEEECTTCTTT
T ss_pred             CceEEECCCCCCCCChh---------HhhCCCCCEEeccCCCCC
Confidence            67777777655544422         456889999998776654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.36  E-value=2.1e-07  Score=86.75  Aligned_cols=20  Identities=10%  Similarity=0.202  Sum_probs=12.6

Q ss_pred             HhccCCCceEEEEEeCCCcc
Q 041569          247 FLGASSQIERLCIDFSSVET  266 (285)
Q Consensus       247 ~l~~~~~L~~L~L~~~~~~~  266 (285)
                      .++.+++|+.|+++.+....
T Consensus       468 ~~~~l~~L~~L~Ls~n~l~~  487 (606)
T 3vq2_A          468 VFANTTNLTFLDLSKCQLEQ  487 (606)
T ss_dssp             CCTTCTTCCEEECTTSCCCE
T ss_pred             hhccCCCCCEEECCCCcCCc
Confidence            34556777777776665554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.35  E-value=5.4e-08  Score=87.52  Aligned_cols=84  Identities=18%  Similarity=0.105  Sum_probs=47.7

Q ss_pred             HHCCCceEEEEeeeCCCcc---ccCCccccCcCCccEEEEcCeeecC-----CCcccc----ccceEEeeeeecChH---
Q 041569           87 TENGLEVLDFMVIADENTY---YALPQTIFSAKLLTSLKLVGCKLEL-----PSFTCA----HLKKLLLSEFPLNDR---  151 (285)
Q Consensus        87 ~~~~l~~L~l~~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~----~L~~L~L~~~~~~~~---  151 (285)
                      ..++++.++++.  +....   ..++..+..+++|++|++++|.+..     ....++    +|++|+|.++.+++.   
T Consensus        26 ~~~~L~~L~L~~--~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           26 LLQQCQVVRLDD--CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHTTCSEEEEES--SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hcCCccEEEccC--CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            345677777765  22221   1344445556777777777766543     111233    577777777766543   


Q ss_pred             HHHHHHhCCCccceeeeecCC
Q 041569          152 ELHHLISKCPLLEDLSISHCH  172 (285)
Q Consensus       152 ~l~~l~~~cp~Le~L~l~~c~  172 (285)
                      .+...+..+++|++|++++|.
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~  124 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNL  124 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHHccCCceeEEECCCCc
Confidence            344445667777777777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.35  E-value=5.3e-07  Score=70.20  Aligned_cols=84  Identities=12%  Similarity=0.130  Sum_probs=65.7

Q ss_pred             CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCee-ecC-----CCc---cccccceEEeeee-ecChHHHHHHHhC
Q 041569           90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCK-LEL-----PSF---TCAHLKKLLLSEF-PLNDRELHHLISK  159 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~-----~~~---~~~~L~~L~L~~~-~~~~~~l~~l~~~  159 (285)
                      .+++++++.  +......+.. +..|++|++|+|++|. +++     .+.   .+++|++|+|++| .+|+.++..+ ..
T Consensus        62 ~L~~LDLs~--~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~  137 (176)
T 3e4g_A           62 KIQAIDATD--SCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HH  137 (176)
T ss_dssp             CEEEEEEES--CCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GG
T ss_pred             eEeEEeCcC--CCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hc
Confidence            588888887  4455544443 4679999999999995 544     111   2568999999999 4899999986 57


Q ss_pred             CCccceeeeecCCCcCeE
Q 041569          160 CPLLEDLSISHCHSLGRI  177 (285)
Q Consensus       160 cp~Le~L~l~~c~~~~~~  177 (285)
                      ||+|+.|++++|+.++..
T Consensus       138 ~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             CTTCCEEEEESCTTCCCH
T ss_pred             CCCCCEEECCCCCCCCch
Confidence            999999999999988764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.35  E-value=7.5e-07  Score=86.42  Aligned_cols=145  Identities=17%  Similarity=0.150  Sum_probs=78.4

Q ss_pred             cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE---Ecc-C
Q 041569          111 TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM---ISS-N  182 (285)
Q Consensus       111 ~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~-~  182 (285)
                      .+..+++|+.|+|++|.+..    ...++++|++|+|+++.++... ...+..+|+|+.|+++++. ++.+.   +.. +
T Consensus       285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~  362 (844)
T 3j0a_A          285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLE  362 (844)
T ss_dssp             CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCC
T ss_pred             hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCCCCCCEEECCCCC-CCccChhhhcCCC
Confidence            33446777777777776543    2235677777777777653210 1124456777777777663 22221   111 6


Q ss_pred             CcceEEEeecCCCceEEEeCCCccEEEEeeCcEeee--cCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEE
Q 041569          183 KLEHLLISSCYGLNALDVDAPRLLSFIFDLNPIPII--STNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCID  260 (285)
Q Consensus       183 ~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~~~~~~--~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  260 (285)
                      +|+.|++.++. +..+.. .|+|+.+.+.++.+...  ....++.++++.+.+...+.      ...+..+++|+.|+|+
T Consensus       363 ~L~~L~Ls~N~-l~~i~~-~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~------~~~~~~l~~L~~L~Ls  434 (844)
T 3j0a_A          363 KLQTLDLRDNA-LTTIHF-IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI------LYFLLRVPHLQILILN  434 (844)
T ss_dssp             CCCEEEEETCC-SCCCSS-CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT------HHHHTTCTTCCEEEEE
T ss_pred             CCCEEECCCCC-CCcccC-CCCcchhccCCCCcccccccccccceeecccCccccCch------hhhhhcCCccceeeCC
Confidence            77777777764 222221 56777777776653211  11245555555444433322      1334567777777776


Q ss_pred             eCCCc
Q 041569          261 FSSVE  265 (285)
Q Consensus       261 ~~~~~  265 (285)
                      .+...
T Consensus       435 ~N~l~  439 (844)
T 3j0a_A          435 QNRFS  439 (844)
T ss_dssp             SCCCC
T ss_pred             CCccc
Confidence            66554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.35  E-value=1.4e-07  Score=79.19  Aligned_cols=164  Identities=20%  Similarity=0.235  Sum_probs=107.5

Q ss_pred             CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      ++++.++++.  ..  ...++. .+..+++|++|++++|.+..    ....+++|++|++.++.++...-. .+..+++|
T Consensus        52 ~~L~~L~l~~--n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L  126 (276)
T 2z62_A           52 PELQVLDLSR--CE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTL  126 (276)
T ss_dssp             TTCSEEECTT--CC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC-CCTTCTTC
T ss_pred             cCCcEEECCC--Cc--CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCch-hcccCCCC
Confidence            5788887765  22  123333 44557999999999997755    234689999999999876321110 15678999


Q ss_pred             ceeeeecCCCcCeEEE----cc-CCcceEEEeecCCCceEEE----eCCCcc----EEEEeeCcEeee-----cCCCccc
Q 041569          164 EDLSISHCHSLGRIMI----SS-NKLEHLLISSCYGLNALDV----DAPRLL----SFIFDLNPIPII-----STNALCP  225 (285)
Q Consensus       164 e~L~l~~c~~~~~~~i----~~-~~L~~L~l~~~~~~~~~~~----~~p~L~----~l~~~~~~~~~~-----~~~~L~~  225 (285)
                      ++|+++++. ++.+.+    .. ++|++|+++++. +..+..    ..++|+    +++++++.+...     ...+|+.
T Consensus       127 ~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~  204 (276)
T 2z62_A          127 KELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE  204 (276)
T ss_dssp             CEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred             CEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccE
Confidence            999999875 333222    22 899999999984 444321    234455    777777763321     1226788


Q ss_pred             ceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569          226 WNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET  266 (285)
Q Consensus       226 l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~  266 (285)
                      ++++...+...+.       ..+..+++|+.|+++.+...-
T Consensus       205 L~L~~n~l~~~~~-------~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          205 LALDTNQLKSVPD-------GIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             EECCSSCCSCCCT-------TTTTTCCSCCEEECCSSCBCC
T ss_pred             EECCCCceeecCH-------hHhcccccccEEEccCCcccc
Confidence            8887766655543       445778999999998777653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.34  E-value=1.8e-07  Score=77.43  Aligned_cols=154  Identities=15%  Similarity=0.100  Sum_probs=106.3

Q ss_pred             CCccEEEEcCeeecC-CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE---cc-CCcceEEEe
Q 041569          116 KLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI---SS-NKLEHLLIS  190 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i---~~-~~L~~L~l~  190 (285)
                      ++.+.++++++.+.. +..-.++|++|+|.++.++...- ..+..+++|++|+++++. ++.+..   .. ++|+.|++.
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECC
Confidence            567889999887766 33334789999999997743211 125678999999999985 333322   22 799999999


Q ss_pred             ecCCCceEE----EeCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEE
Q 041569          191 SCYGLNALD----VDAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCID  260 (285)
Q Consensus       191 ~~~~~~~~~----~~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  260 (285)
                      ++. +..+.    -..++|++|+++++.+.      +...++|+.++++...+...+.       ..++.+++|+.|+|+
T Consensus        92 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~L~  163 (251)
T 3m19_A           92 NNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-------GAFDKLTNLQTLSLS  163 (251)
T ss_dssp             TSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCCEEECC
T ss_pred             CCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-------HHcCcCcCCCEEECC
Confidence            985 33332    14689999999998743      1234688888988766665544       345678999999999


Q ss_pred             eCCCccCCCchhhhhhhhee
Q 041569          261 FSSVETNSEDATLHFLYKLR  280 (285)
Q Consensus       261 ~~~~~~~~~~~~f~~L~~L~  280 (285)
                      .+.....+.. .|..+++|+
T Consensus       164 ~N~l~~~~~~-~~~~l~~L~  182 (251)
T 3m19_A          164 TNQLQSVPHG-AFDRLGKLQ  182 (251)
T ss_dssp             SSCCSCCCTT-TTTTCTTCC
T ss_pred             CCcCCccCHH-HHhCCCCCC
Confidence            9888764432 244444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.34  E-value=6e-07  Score=82.07  Aligned_cols=153  Identities=13%  Similarity=0.091  Sum_probs=101.6

Q ss_pred             CCccEEEEcCeeecC-C-CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeE-E----Ecc-CCcceE
Q 041569          116 KLLTSLKLVGCKLEL-P-SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRI-M----ISS-NKLEHL  187 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~-~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~-~----i~~-~~L~~L  187 (285)
                      .+|+.|++++|.+.. . ...+++|++|+++++.+++.... .+..+++|+.|++++|. ++.+ .    +.. ++|+.|
T Consensus       302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L  379 (520)
T 2z7x_B          302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQL  379 (520)
T ss_dssp             CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEE
T ss_pred             CceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEE
Confidence            346666666665544 2 25788999999999988653222 24678999999999886 3321 1    222 889999


Q ss_pred             EEeecCCCce-EE----EeCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEE
Q 041569          188 LISSCYGLNA-LD----VDAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLC  258 (285)
Q Consensus       188 ~l~~~~~~~~-~~----~~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~  258 (285)
                      +++++. +.. +.    ...++|++|+++++.+.    ....++|+.++++...+..++.        -+..+++|+.|+
T Consensus       380 ~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~--------~~~~l~~L~~L~  450 (520)
T 2z7x_B          380 DISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPK--------QVVKLEALQELN  450 (520)
T ss_dssp             ECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCG--------GGGGCTTCCEEE
T ss_pred             ECCCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccch--------hhhcCCCCCEEE
Confidence            999986 222 21    24689999999988642    1112688999988766665544        123789999999


Q ss_pred             EEeCCCccCCCchhhhhhhhee
Q 041569          259 IDFSSVETNSEDATLHFLYKLR  280 (285)
Q Consensus       259 L~~~~~~~~~~~~~f~~L~~L~  280 (285)
                      ++.+.....+.. .|..+++|+
T Consensus       451 L~~N~l~~l~~~-~~~~l~~L~  471 (520)
T 2z7x_B          451 VASNQLKSVPDG-IFDRLTSLQ  471 (520)
T ss_dssp             CCSSCCCCCCTT-TTTTCTTCC
T ss_pred             CCCCcCCccCHH-HhccCCccc
Confidence            998888765443 355555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.33  E-value=5.9e-08  Score=84.84  Aligned_cols=168  Identities=17%  Similarity=0.197  Sum_probs=102.2

Q ss_pred             CCceEEEEeeeCCCcc---ccCCccccCc-CCccEEEEcCeeecC-C-------Cccc-cccceEEeeeeecChH---HH
Q 041569           90 GLEVLDFMVIADENTY---YALPQTIFSA-KLLTSLKLVGCKLEL-P-------SFTC-AHLKKLLLSEFPLNDR---EL  153 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~---~~l~~~~~~~-~~L~~L~L~~~~~~~-~-------~~~~-~~L~~L~L~~~~~~~~---~l  153 (285)
                      ++++++++..  ....   ..+...+... ++|++|+|++|.+.. .       ...+ ++|++|+|+++.+++.   .+
T Consensus        52 ~L~~L~Ls~N--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  129 (362)
T 3goz_A           52 SVTSLNLSGN--SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF  129 (362)
T ss_dssp             TCCEEECCSS--CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             ceeEEECcCC--CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence            6888877662  2111   1111122222 788888888887764 1       1123 7888888888877443   34


Q ss_pred             HHHHhC-CCccceeeeecCCCcCeEEE-------cc--CCcceEEEeecCCCceEE-------E-eC-CCccEEEEeeCc
Q 041569          154 HHLISK-CPLLEDLSISHCHSLGRIMI-------SS--NKLEHLLISSCYGLNALD-------V-DA-PRLLSFIFDLNP  214 (285)
Q Consensus       154 ~~l~~~-cp~Le~L~l~~c~~~~~~~i-------~~--~~L~~L~l~~~~~~~~~~-------~-~~-p~L~~l~~~~~~  214 (285)
                      ...+.. +.+|++|++++|. ++...+       ..  ++|++|++++|. +....       + .. ++|++|+++++.
T Consensus       130 ~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  207 (362)
T 3goz_A          130 KQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL  207 (362)
T ss_dssp             HHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence            444444 5688888888874 221111       11  388899888885 22111       1 23 488999888876


Q ss_pred             Eee----------ec-CCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCC
Q 041569          215 IPI----------IS-TNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSV  264 (285)
Q Consensus       215 ~~~----------~~-~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~  264 (285)
                      +..          .. .++|++++++...+...+.   ..+...+..+++|+.|+|+.+..
T Consensus       208 i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~---~~l~~~~~~l~~L~~L~L~~n~l  265 (362)
T 3goz_A          208 LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL---ENLKLLKDSLKHLQTVYLDYDIV  265 (362)
T ss_dssp             GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH---HHHHHTTTTTTTCSEEEEEHHHH
T ss_pred             CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH---HHHHHHHhcCCCccEEEeccCCc
Confidence            321          11 3478888887766655443   23346677888899999887763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.33  E-value=1.2e-07  Score=80.95  Aligned_cols=164  Identities=15%  Similarity=0.078  Sum_probs=98.1

Q ss_pred             CCCceEEEEeeeCCCccc--cCC-ccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecCh-HHHH--HHHh
Q 041569           89 NGLEVLDFMVIADENTYY--ALP-QTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLND-RELH--HLIS  158 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~--~l~-~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~-~~l~--~l~~  158 (285)
                      +++++++++..  .....  .++ ..+..+++|++|+|++|.+.. .   ...+++|++|+|+++.+.. ..+.  ....
T Consensus       117 ~~L~~L~Ls~n--~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  194 (310)
T 4glp_A          117 LALSSLRLRNV--SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH  194 (310)
T ss_dssp             BCCSSCEEESC--CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred             CCCCEEEeecc--cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence            45777777663  21110  011 122346788888888887654 1   2357888888888887633 2222  1124


Q ss_pred             CCCccceeeeecCCCcCeEE-----E-cc-CCcceEEEeecCCCceE-E--E-e---CCCccEEEEeeCcEe---eecCC
Q 041569          159 KCPLLEDLSISHCHSLGRIM-----I-SS-NKLEHLLISSCYGLNAL-D--V-D---APRLLSFIFDLNPIP---IISTN  221 (285)
Q Consensus       159 ~cp~Le~L~l~~c~~~~~~~-----i-~~-~~L~~L~l~~~~~~~~~-~--~-~---~p~L~~l~~~~~~~~---~~~~~  221 (285)
                      .+|+|++|++++|. ++.+.     + .. ++|++|+++++. +..+ .  + .   .|+|++|+++++.+.   ....+
T Consensus       195 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~  272 (310)
T 4glp_A          195 KFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPA  272 (310)
T ss_dssp             SSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCS
T ss_pred             cCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcC
Confidence            67888888888774 33211     1 11 678888888875 2221 1  1 1   268888888887632   22235


Q ss_pred             CcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          222 ALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       222 ~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      +|+.++++.+.+...+.         +..+++|+.|+|+.+...
T Consensus       273 ~L~~L~Ls~N~l~~~~~---------~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          273 KLRVLDLSSNRLNRAPQ---------PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCSCEECCSCCCCSCCC---------TTSCCCCSCEECSSTTTS
T ss_pred             CCCEEECCCCcCCCCch---------hhhCCCccEEECcCCCCC
Confidence            78888887766554322         356799999999877654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.32  E-value=6.5e-07  Score=81.44  Aligned_cols=154  Identities=16%  Similarity=0.177  Sum_probs=110.6

Q ss_pred             cCCccEEEEcCeeecC-C---CccccccceEEeeeeecCh-HHHHHHHhCCCccceeeeecCCCcCeEEEccCCcceEEE
Q 041569          115 AKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLND-RELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLI  189 (285)
Q Consensus       115 ~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~~~L~~L~l  189 (285)
                      +++|+.|+|++|.+.. .   ...+++|++|+|+++.++. ..    +..+++|+.|++++|. ++.+.. .++|+.|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~l~~-~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQELLV-GPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSE-EEEEEE-CTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCc-CCCCCC-CCCcCEEEC
Confidence            4599999999998765 2   2468999999999997742 22    6789999999999984 444332 289999999


Q ss_pred             eecCCCceEEE-eCCCccEEEEeeCcEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeC
Q 041569          190 SSCYGLNALDV-DAPRLLSFIFDLNPIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFS  262 (285)
Q Consensus       190 ~~~~~~~~~~~-~~p~L~~l~~~~~~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~  262 (285)
                      ++|. +..+.. ..|+|++|+++++.+.      +...++|+.++++.+.+......      .+...+++|+.|+|+.+
T Consensus       107 ~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          107 ANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA------ELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             CSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG------GGGGGTTTCCEEECTTS
T ss_pred             cCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH------HHhhhCCcccEEecCCC
Confidence            9995 454444 5799999999998732      23346888888887655543321      34457899999999988


Q ss_pred             CCccCCCchhhhhhhheee
Q 041569          263 SVETNSEDATLHFLYKLRL  281 (285)
Q Consensus       263 ~~~~~~~~~~f~~L~~L~l  281 (285)
                      .....+....+.+|..|.+
T Consensus       180 ~l~~~~~~~~l~~L~~L~L  198 (487)
T 3oja_A          180 FIYDVKGQVVFAKLKTLDL  198 (487)
T ss_dssp             CCCEEECCCCCTTCCEEEC
T ss_pred             ccccccccccCCCCCEEEC
Confidence            8876433333445555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.32  E-value=3.5e-07  Score=85.99  Aligned_cols=152  Identities=13%  Similarity=0.124  Sum_probs=82.9

Q ss_pred             CccEEEEcCeeecC-CCc----------cccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc----
Q 041569          117 LLTSLKLVGCKLEL-PSF----------TCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS----  181 (285)
Q Consensus       117 ~L~~L~L~~~~~~~-~~~----------~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~----  181 (285)
                      +|+.|++++|.+.. .+.          .+++|++|+|.++.++. .-..+...+++|+.|++++|. ++.+....    
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~  480 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDE  480 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEET
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCC-CCCcCHHHhccc
Confidence            56666666665533 111          34477777777776641 112234457778888887764 22221111    


Q ss_pred             -------CCcceEEEeecCCCceEEE-----eCCCccEEEEeeCcEe-----eecCCCcccceecc------ccC-CCCC
Q 041569          182 -------NKLEHLLISSCYGLNALDV-----DAPRLLSFIFDLNPIP-----IISTNALCPWNVTL------DCD-SNLD  237 (285)
Q Consensus       182 -------~~L~~L~l~~~~~~~~~~~-----~~p~L~~l~~~~~~~~-----~~~~~~L~~l~i~~------~~~-~~~~  237 (285)
                             ++|+.|++.++. +..+..     ..|+|+.|+++++.+.     +...++|+.++++.      ..+ +..+
T Consensus       481 ~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p  559 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP  559 (636)
T ss_dssp             TEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred             cccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence                   178888887774 333321     4577888888777632     22335677777632      111 1111


Q ss_pred             hhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569          238 CDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR  280 (285)
Q Consensus       238 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~  280 (285)
                              ..+..+++|+.|+|+.+.....+.. ++.+|+.|.
T Consensus       560 --------~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~L~~L~  593 (636)
T 4eco_A          560 --------EGITLCPSLTQLQIGSNDIRKVNEK-ITPNISVLD  593 (636)
T ss_dssp             --------TTGGGCSSCCEEECCSSCCCBCCSC-CCTTCCEEE
T ss_pred             --------HHHhcCCCCCEEECCCCcCCccCHh-HhCcCCEEE
Confidence                    2345678888888877777554433 234454443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.31  E-value=1.4e-07  Score=89.20  Aligned_cols=39  Identities=13%  Similarity=-0.028  Sum_probs=22.6

Q ss_pred             cccccceEEeeeeecChHHHHHHHhCCCccceeeeecCC
Q 041569          134 TCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCH  172 (285)
Q Consensus       134 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  172 (285)
                      .+++|+.|++.++.++...-...+..+++|+.|++++|.
T Consensus       403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  441 (680)
T 1ziw_A          403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK  441 (680)
T ss_dssp             TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred             CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence            456777777776655321111224567777777777664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.31  E-value=6.3e-07  Score=73.42  Aligned_cols=142  Identities=11%  Similarity=0.055  Sum_probs=96.7

Q ss_pred             CCccEEEEcCeeecC----CCccccccceEEeeeee-cChHHHHHHHhCCCccceeeeecCCCcCeEEEc---c-CCcce
Q 041569          116 KLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFP-LNDRELHHLISKCPLLEDLSISHCHSLGRIMIS---S-NKLEH  186 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~---~-~~L~~  186 (285)
                      ++|+.|+++++.+..    ....+++|++|++.++. ++.-. ...+..+++|++|++++|..++.+...   . ++|+.
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            489999999998765    23468999999999996 53211 112467999999999996667655422   2 79999


Q ss_pred             EEEeecCCCceEE-E-eCCCcc---EEEEeeC-cEee------ecCCCcc-cceeccccCCCCChhhHHHHHHHhccCCC
Q 041569          187 LLISSCYGLNALD-V-DAPRLL---SFIFDLN-PIPI------ISTNALC-PWNVTLDCDSNLDCDWFLSLKEFLGASSQ  253 (285)
Q Consensus       187 L~l~~~~~~~~~~-~-~~p~L~---~l~~~~~-~~~~------~~~~~L~-~l~i~~~~~~~~~~~~~~~l~~~l~~~~~  253 (285)
                      |++.++. +..+. + ..++|+   +|++.++ .+..      ...++|+ .++++...+...+.       ..+.. ++
T Consensus       110 L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-------~~~~~-~~  180 (239)
T 2xwt_C          110 LGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-------YAFNG-TK  180 (239)
T ss_dssp             EEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-------TTTTT-CE
T ss_pred             EeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-------hhcCC-CC
Confidence            9999995 22222 2 456777   9999988 5321      2234677 78777655554443       22333 78


Q ss_pred             ceEEEEEeCC-CccC
Q 041569          254 IERLCIDFSS-VETN  267 (285)
Q Consensus       254 L~~L~L~~~~-~~~~  267 (285)
                      |+.|+++.+. ....
T Consensus       181 L~~L~L~~n~~l~~i  195 (239)
T 2xwt_C          181 LDAVYLNKNKYLTVI  195 (239)
T ss_dssp             EEEEECTTCTTCCEE
T ss_pred             CCEEEcCCCCCcccC
Confidence            9999998773 6543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.29  E-value=8.7e-07  Score=82.03  Aligned_cols=113  Identities=19%  Similarity=0.109  Sum_probs=52.6

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecCCCccccccceEEeeeeecChHHHHHHHhCCCccceeee
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSI  168 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  168 (285)
                      .+++.+++...  ..  ..+|..++  ++|+.|+|++|.+...+..+++|++|+|+++.++.  +.. +  +.+|+.|++
T Consensus        59 ~~L~~L~Ls~n--~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~--ip~-l--~~~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRL--NL--SSLPDNLP--PQITVLEITQNALISLPELPASLEYLDACDNRLST--LPE-L--PASLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSS--CC--SCCCSCCC--TTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC--CCC-C--CTTCCEEEC
T ss_pred             CCccEEEeCCC--CC--CccCHhHc--CCCCEEECcCCCCcccccccCCCCEEEccCCCCCC--cch-h--hcCCCEEEC
Confidence            46677666542  21  22444332  56666776666655422345666666666665532  111 1  125566666


Q ss_pred             ecCCCcCeEEEccCCcceEEEeecCCCceEEEeCCCccEEEEeeCc
Q 041569          169 SHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNP  214 (285)
Q Consensus       169 ~~c~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~~  214 (285)
                      +++. ++.+.-..++|+.|+++++. +..+....++|+.|+++++.
T Consensus       128 s~N~-l~~lp~~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~  171 (571)
T 3cvr_A          128 DNNQ-LTMLPELPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQ  171 (571)
T ss_dssp             CSSC-CSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred             CCCc-CCCCCCcCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCC
Confidence            5553 21111112455555555553 22222233455555555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.28  E-value=9.1e-08  Score=86.05  Aligned_cols=170  Identities=18%  Similarity=0.177  Sum_probs=109.1

Q ss_pred             CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--------CCccccccceEEeeeeecChHHHHHHHhCCC
Q 041569           90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--------PSFTCAHLKKLLLSEFPLNDRELHHLISKCP  161 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--------~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp  161 (285)
                      .+++++++.  ...........+..+++|++|++++|.+..        ....+++|++|+|+++.+++.....+...++
T Consensus         4 ~l~~L~Ls~--~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            4 DIQSLDIQC--EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEES--CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             cceehhhhh--cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            456666654  333333333334557899999999998763        1234689999999999988888877777777


Q ss_pred             ----ccceeeeecCCCcCeE-------EEcc-CCcceEEEeecCCCce-----EE----EeCCCccEEEEeeCcEee---
Q 041569          162 ----LLEDLSISHCHSLGRI-------MISS-NKLEHLLISSCYGLNA-----LD----VDAPRLLSFIFDLNPIPI---  217 (285)
Q Consensus       162 ----~Le~L~l~~c~~~~~~-------~i~~-~~L~~L~l~~~~~~~~-----~~----~~~p~L~~l~~~~~~~~~---  217 (285)
                          +|++|++++|. ++..       .+.. ++|++|+++++. +..     +.    -..++|++|++.++.+..   
T Consensus        82 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  159 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  159 (461)
T ss_dssp             STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence                79999999985 3321       1122 789999999885 221     11    113579999998886331   


Q ss_pred             -------ecCCCcccceeccccCCCCChhhHHHHHHHh-ccCCCceEEEEEeCCCcc
Q 041569          218 -------ISTNALCPWNVTLDCDSNLDCDWFLSLKEFL-GASSQIERLCIDFSSVET  266 (285)
Q Consensus       218 -------~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l-~~~~~L~~L~L~~~~~~~  266 (285)
                             ...++|++++++...+.   ......+...+ ...++|+.|+++.+....
T Consensus       160 ~~l~~~l~~~~~L~~L~L~~n~i~---~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          160 EPLASVLRAKPDFKELTVSNNDIN---EAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCH---HHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             HHHHHHHhhCCCCCEEECcCCCcc---hHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence                   22468888888764332   11122222322 346799999998776654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.27  E-value=8.6e-08  Score=72.67  Aligned_cols=101  Identities=22%  Similarity=0.216  Sum_probs=67.8

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL  166 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  166 (285)
                      ++++.+.+..  +......+|..+..+++|+.|++++|.+..  ....+++|++|+++++.++.. +......+++|++|
T Consensus        17 ~~l~~L~l~~--n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDN--SRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTT--CBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred             ccCeEEEccC--CcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence            4577777665  332223566666678899999999987765  334688899999999888543 44456668999999


Q ss_pred             eeecCCCcCeEE----Ecc-CCcceEEEeecC
Q 041569          167 SISHCHSLGRIM----ISS-NKLEHLLISSCY  193 (285)
Q Consensus       167 ~l~~c~~~~~~~----i~~-~~L~~L~l~~~~  193 (285)
                      ++++|. ++.+.    +.. ++|++|++.++.
T Consensus        94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           94 NLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             ECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             ECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc
Confidence            998885 33321    111 567777776664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.25  E-value=1.7e-07  Score=80.85  Aligned_cols=174  Identities=17%  Similarity=0.146  Sum_probs=97.9

Q ss_pred             CCCceEEEEeeeCCCccccC-CccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYAL-PQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      ++++.+++..  ..  ...+ +..+..+++|++|++++|.+..    ....+++|++|++.++.++.-.    ...+++|
T Consensus        54 ~~l~~L~l~~--n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~----~~~~~~L  125 (332)
T 2ft3_A           54 PDTTLLDLQN--ND--ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP----PNLPSSL  125 (332)
T ss_dssp             TTCCEEECCS--SC--CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCC----SSCCTTC
T ss_pred             CCCeEEECCC--Cc--CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccC----ccccccC
Confidence            4677777665  22  1223 3345567889999999887654    2345788999999888764211    1123789


Q ss_pred             ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCC----CceEEEe---------------------CCCccEEEEeeCc
Q 041569          164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYG----LNALDVD---------------------APRLLSFIFDLNP  214 (285)
Q Consensus       164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~----~~~~~~~---------------------~p~L~~l~~~~~~  214 (285)
                      ++|+++++. ++.+.   +.. ++|+.|++.++.-    ...-.+.                     .++|++|++.++.
T Consensus       126 ~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~  204 (332)
T 2ft3_A          126 VELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK  204 (332)
T ss_dssp             CEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC
T ss_pred             CEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc
Confidence            999998874 22222   111 6777777777641    0000011                     1345555555544


Q ss_pred             Ee------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569          215 IP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR  280 (285)
Q Consensus       215 ~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~  280 (285)
                      +.      +...++|+.++++...+.....       ..+..+++|+.|+++.+.....+..  +..+++|+
T Consensus       205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~lp~~--l~~l~~L~  267 (332)
T 2ft3_A          205 IQAIELEDLLRYSKLYRLGLGHNQIRMIEN-------GSLSFLPTLRELHLDNNKLSRVPAG--LPDLKLLQ  267 (332)
T ss_dssp             CCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-------TGGGGCTTCCEEECCSSCCCBCCTT--GGGCTTCC
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCcCCh-------hHhhCCCCCCEEECCCCcCeecChh--hhcCccCC
Confidence            21      1222355666665544443332       2356788999999988877754432  44444444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.24  E-value=1.6e-06  Score=80.08  Aligned_cols=165  Identities=14%  Similarity=0.043  Sum_probs=106.6

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecCh-HHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLND-RELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~L  163 (285)
                      .+++.+++...  ......+   ...+++|+.|++++|.+..    ....+++|++|++.++.++. ..+...+..+++|
T Consensus       331 ~~L~~L~l~~n--~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L  405 (562)
T 3a79_B          331 MNIKMLSISDT--PFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL  405 (562)
T ss_dssp             CCCSEEEEESS--CCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC
T ss_pred             CcceEEEccCC--CcccccC---ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC
Confidence            46777777662  2211111   1357889999999987765    22468899999999988854 3444556788999


Q ss_pred             ceeeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEEEeC-CCccEEEEeeCcEee-----ecCCCcccceeccccC
Q 041569          164 EDLSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALDVDA-PRLLSFIFDLNPIPI-----ISTNALCPWNVTLDCD  233 (285)
Q Consensus       164 e~L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~~~~-p~L~~l~~~~~~~~~-----~~~~~L~~l~i~~~~~  233 (285)
                      +.|+++++.-...+.   ... ++|+.|+++++.--..+.... ++|++|+++++.+..     ...++|+.++++...+
T Consensus       406 ~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l  485 (562)
T 3a79_B          406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL  485 (562)
T ss_dssp             CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCC
T ss_pred             CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCC
Confidence            999999886322121   122 789999998885111111112 689999988886432     1335778888877666


Q ss_pred             CCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          234 SNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       234 ~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      ...+..       .+..+++|+.|+++.+...
T Consensus       486 ~~l~~~-------~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          486 KSVPDG-------VFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             CCCCTT-------STTTCTTCCCEECCSCCBC
T ss_pred             CCCCHH-------HHhcCCCCCEEEecCCCcC
Confidence            555442       3567788888888777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.24  E-value=2.4e-07  Score=71.72  Aligned_cols=127  Identities=20%  Similarity=0.128  Sum_probs=79.1

Q ss_pred             cCCccEEEEcCeeec--C---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-E-c-cCCcce
Q 041569          115 AKLLTSLKLVGCKLE--L---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-I-S-SNKLEH  186 (285)
Q Consensus       115 ~~~L~~L~L~~~~~~--~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i-~-~~~L~~  186 (285)
                      .++|+.|++++|.+.  .   ....+++|++|++.++.++..   ..+..+++|+.|++++|.-...+. . . .++|+.
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            378999999999876  3   224689999999999987543   446678899999999886322111 1 1 266777


Q ss_pred             EEEeecCCCceEE----E-eCCCccEEEEeeCcEeeecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEe
Q 041569          187 LLISSCYGLNALD----V-DAPRLLSFIFDLNPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDF  261 (285)
Q Consensus       187 L~l~~~~~~~~~~----~-~~p~L~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  261 (285)
                      |++.+|. +..+.    + ..|+|+.|++.++                  .+...+...    ...+..+++|+.|++..
T Consensus       100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N------------------~l~~~~~~~----~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          100 LNLSGNK-LKDISTLEPLKKLECLKSLDLFNC------------------EVTNLNDYR----ESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             EECBSSS-CCSSGGGGGGSSCSCCCEEECCSS------------------GGGTSTTHH----HHHHTTCSSCCEETTEE
T ss_pred             EeccCCc-cCcchhHHHHhcCCCCCEEEeeCC------------------cCcchHHHH----HHHHHhCccCcEecCCC
Confidence            7777764 22110    1 2344444444443                  222222211    24677889999999888


Q ss_pred             CCCccC
Q 041569          262 SSVETN  267 (285)
Q Consensus       262 ~~~~~~  267 (285)
                      ......
T Consensus       157 n~~~~~  162 (168)
T 2ell_A          157 REDQEA  162 (168)
T ss_dssp             TTSCBC
T ss_pred             CChhhc
Confidence            776653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.23  E-value=1.9e-06  Score=81.03  Aligned_cols=122  Identities=13%  Similarity=0.040  Sum_probs=77.1

Q ss_pred             CCCceEEEEeeeCCCccc----------------cCCcccc--CcCCccEEEEcCeeecC----CCccccccceEEeeee
Q 041569           89 NGLEVLDFMVIADENTYY----------------ALPQTIF--SAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEF  146 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~  146 (285)
                      ++++.|+++..  .....                .+|..+.  .+++|++|+|++|.+..    ....+++|++|++.++
T Consensus       206 ~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          206 TKLRQFYMGNS--PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             TTCCEEEEESC--CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             cCCCEEECcCC--ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            57888888763  22210                1888888  89999999999997654    2346899999999999


Q ss_pred             e-cCh----HHHHHH--HhCCCccceeeeecCCCcCeEE----Ecc-CCcceEEEeecCCCc-eEE-E-eCCCccEEEEe
Q 041569          147 P-LND----RELHHL--ISKCPLLEDLSISHCHSLGRIM----ISS-NKLEHLLISSCYGLN-ALD-V-DAPRLLSFIFD  211 (285)
Q Consensus       147 ~-~~~----~~l~~l--~~~cp~Le~L~l~~c~~~~~~~----i~~-~~L~~L~l~~~~~~~-~~~-~-~~p~L~~l~~~  211 (285)
                      . ++.    ..+..+  ...+++|++|++++|. ++.+.    +.. ++|+.|++.++. +. .+. + ..++|++|++.
T Consensus       284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~~L~~L~L~  361 (636)
T 4eco_A          284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLA  361 (636)
T ss_dssp             TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEEEESEEECC
T ss_pred             CCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCCCCCEEECC
Confidence            7 765    223322  1335788888888775 22222    112 677777777764 22 221 1 34566666666


Q ss_pred             eCc
Q 041569          212 LNP  214 (285)
Q Consensus       212 ~~~  214 (285)
                      ++.
T Consensus       362 ~N~  364 (636)
T 4eco_A          362 YNQ  364 (636)
T ss_dssp             SSE
T ss_pred             CCc
Confidence            554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.23  E-value=1.3e-07  Score=82.72  Aligned_cols=174  Identities=18%  Similarity=0.111  Sum_probs=106.0

Q ss_pred             CCCceEEEEeeeCCCcc---ccCCccccCc-CCccEEEEcCeeecC-CC-------cc-ccccceEEeeeeecChH---H
Q 041569           89 NGLEVLDFMVIADENTY---YALPQTIFSA-KLLTSLKLVGCKLEL-PS-------FT-CAHLKKLLLSEFPLNDR---E  152 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~---~~l~~~~~~~-~~L~~L~L~~~~~~~-~~-------~~-~~~L~~L~L~~~~~~~~---~  152 (285)
                      +++++++++..  ....   ..+...+..+ ++|++|+|++|.+.. ..       .. .++|++|+|+++.+++.   .
T Consensus        80 ~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  157 (362)
T 3goz_A           80 ANVTSLNLSGN--FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE  157 (362)
T ss_dssp             TTCCEEECCSS--CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             CCccEEECcCC--cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence            57888887762  2111   1111123334 789999999988765 11       11 25899999999888543   4


Q ss_pred             HHHHHhCCC-ccceeeeecCCCcCeEEE-------cc--CCcceEEEeecCCCce-----EE--E-e-CCCccEEEEeeC
Q 041569          153 LHHLISKCP-LLEDLSISHCHSLGRIMI-------SS--NKLEHLLISSCYGLNA-----LD--V-D-APRLLSFIFDLN  213 (285)
Q Consensus       153 l~~l~~~cp-~Le~L~l~~c~~~~~~~i-------~~--~~L~~L~l~~~~~~~~-----~~--~-~-~p~L~~l~~~~~  213 (285)
                      +...+..++ +|++|++++|. ++....       ..  ++|++|++++|. +..     +.  + . .++|++|+++++
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N  235 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN  235 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred             HHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC
Confidence            444455566 89999999885 322211       11  489999998885 222     11  1 1 358999999888


Q ss_pred             cEee----------ecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569          214 PIPI----------ISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET  266 (285)
Q Consensus       214 ~~~~----------~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~  266 (285)
                      .+..          ...+.|+.++++...+..........+...+..+++|+.|+++.+....
T Consensus       236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            7432          2335788888876554444444444444555666777777776666543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.22  E-value=9.4e-07  Score=85.69  Aligned_cols=134  Identities=14%  Similarity=0.085  Sum_probs=72.5

Q ss_pred             cccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc-----------CCcceEEEeecCCCceEEE----
Q 041569          136 AHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS-----------NKLEHLLISSCYGLNALDV----  200 (285)
Q Consensus       136 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~-----------~~L~~L~l~~~~~~~~~~~----  200 (285)
                      ++|+.|+|.++.++. .-..+...+++|+.|++++|. ++.+....           ++|+.|++++|. +..+..    
T Consensus       673 ~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~  749 (876)
T 4ecn_A          673 INASTVTLSYNEIQK-FPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRA  749 (876)
T ss_dssp             CCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGST
T ss_pred             CCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCC-CccchHHhhh
Confidence            467777777766541 112234467778888887763 33221111           178888888774 333331    


Q ss_pred             -eCCCccEEEEeeCcEe-----eecCCCcccceecc------ccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCC
Q 041569          201 -DAPRLLSFIFDLNPIP-----IISTNALCPWNVTL------DCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNS  268 (285)
Q Consensus       201 -~~p~L~~l~~~~~~~~-----~~~~~~L~~l~i~~------~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~  268 (285)
                       ..|+|+.|+++++.+.     +...++|+.++++.      ..+....       ...+..+++|+.|+|+.+.....+
T Consensus       750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i-------p~~l~~L~~L~~L~Ls~N~L~~Ip  822 (876)
T 4ecn_A          750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW-------PTGITTCPSLIQLQIGSNDIRKVD  822 (876)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCC-------CTTGGGCSSCCEEECCSSCCCBCC
T ss_pred             ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccC-------hHHHhcCCCCCEEECCCCCCCccC
Confidence             3577888888777532     22345677776643      1111111       123456778888888777775544


Q ss_pred             Cchhhhhhhhee
Q 041569          269 EDATLHFLYKLR  280 (285)
Q Consensus       269 ~~~~f~~L~~L~  280 (285)
                      .. ++.+|+.|.
T Consensus       823 ~~-l~~~L~~Ld  833 (876)
T 4ecn_A          823 EK-LTPQLYILD  833 (876)
T ss_dssp             SC-CCSSSCEEE
T ss_pred             Hh-hcCCCCEEE
Confidence            33 233444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.20  E-value=2.2e-07  Score=90.11  Aligned_cols=78  Identities=18%  Similarity=0.144  Sum_probs=54.4

Q ss_pred             CCCceEEEEeeeCCCccccCCc--cccCcCCccEEEEcCeeecC-C-CccccccceEEeeeeecChHHHHHHHhCCCc-c
Q 041569           89 NGLEVLDFMVIADENTYYALPQ--TIFSAKLLTSLKLVGCKLEL-P-SFTCAHLKKLLLSEFPLNDRELHHLISKCPL-L  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~-~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~-L  163 (285)
                      ++++.|.+..  ....  .+|.  .+..+++|+.|+|++|.+.. + ...+++|+.|+|.++.++  .+..-+..+++ |
T Consensus       548 ~~L~~L~Ls~--N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L  621 (876)
T 4ecn_A          548 PKIQIFYMGY--NNLE--EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQV  621 (876)
T ss_dssp             TTCCEEECCS--SCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTC
T ss_pred             CCccEEEeeC--CcCC--ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccC
Confidence            4788888776  3333  6777  67778889999999887655 2 235788888888888764  22222556777 8


Q ss_pred             ceeeeecCC
Q 041569          164 EDLSISHCH  172 (285)
Q Consensus       164 e~L~l~~c~  172 (285)
                      +.|++++|.
T Consensus       622 ~~L~Ls~N~  630 (876)
T 4ecn_A          622 EGLGFSHNK  630 (876)
T ss_dssp             CEEECCSSC
T ss_pred             CEEECcCCC
Confidence            888888774

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.20  E-value=1e-06  Score=79.39  Aligned_cols=98  Identities=17%  Similarity=0.127  Sum_probs=47.6

Q ss_pred             ccCcCCccEEEEcCeeecCCCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEccCCcceEEEee
Q 041569          112 IFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISS  191 (285)
Q Consensus       112 ~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~~~L~~L~l~~  191 (285)
                      +..+++|+.|++++|.+...+...++|++|++.++.++.  +.. +..+++|+.|+++++. ++.+.-..++|+.|++.+
T Consensus       191 ~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~  266 (454)
T 1jl5_A          191 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRD  266 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCS
T ss_pred             ccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCc-CCcccccccccCEEECCC
Confidence            444566666666666554322223466666666665531  111 4456777777777653 221111114555555555


Q ss_pred             cCCCceEEEeCCCccEEEEeeCc
Q 041569          192 CYGLNALDVDAPRLLSFIFDLNP  214 (285)
Q Consensus       192 ~~~~~~~~~~~p~L~~l~~~~~~  214 (285)
                      +. +..+....++|++|+++++.
T Consensus       267 N~-l~~l~~~~~~L~~L~ls~N~  288 (454)
T 1jl5_A          267 NY-LTDLPELPQSLTFLDVSENI  288 (454)
T ss_dssp             SC-CSCCCCCCTTCCEEECCSSC
T ss_pred             Cc-ccccCcccCcCCEEECcCCc
Confidence            53 22222223445555554443

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.19  E-value=2.3e-07  Score=77.34  Aligned_cols=35  Identities=20%  Similarity=0.466  Sum_probs=33.1

Q ss_pred             cCCCCCHHHHHHHhcCCChhhHHhhhhcccchhhc
Q 041569            7 QISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQF   41 (285)
Q Consensus         7 ~~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~l   41 (285)
                      .|+.||+||+.+||+||+++|+++++.|||+||.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            47789999999999999999999999999999986

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.14  E-value=1e-06  Score=74.08  Aligned_cols=36  Identities=17%  Similarity=0.557  Sum_probs=34.2

Q ss_pred             CcCCCCCHHHHHHHhcCCChhhHH-hhhhcccchhhc
Q 041569            6 DQISDLPPSIIHHIMTYLSAKEVT-RTSILSTSWNQF   41 (285)
Q Consensus         6 d~~~~LP~~il~~I~s~L~~~~~~-~~~~vskrWr~l   41 (285)
                      ..+..||+|++.+||++||+++++ ++++|||+|+.+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            468899999999999999999999 999999999987

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.13  E-value=2.1e-07  Score=81.75  Aligned_cols=128  Identities=17%  Similarity=0.124  Sum_probs=81.1

Q ss_pred             HHHHHHCCCceEEEEeeeCCCcc---ccCCccccC-cCCccEEEEcCeeecC-----CCccccccceEEeeeeecChHHH
Q 041569           83 IELATENGLEVLDFMVIADENTY---YALPQTIFS-AKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPLNDREL  153 (285)
Q Consensus        83 l~~~~~~~l~~L~l~~~~~~~~~---~~l~~~~~~-~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l  153 (285)
                      +...+.++++.++++.  +....   ..+...+.. +++|++|+|++|.+..     ....+++|++|+|+++.+++...
T Consensus        66 l~~~~~~~L~~L~Ls~--n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~  143 (372)
T 3un9_A           66 FSAEVLSSLRQLNLAG--VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC  143 (372)
T ss_dssp             HHHHHHTTCCEEECTT--SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH
T ss_pred             HHHHHHhhCCEEEecC--CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH
Confidence            3334567888888766  22221   122233332 3689999999998754     33457889999999999877666


Q ss_pred             HHHH----hCCCccceeeeecCCCcCeEE---E----c-cCCcceEEEeecCCCce-----EE---EeCCCccEEEEeeC
Q 041569          154 HHLI----SKCPLLEDLSISHCHSLGRIM---I----S-SNKLEHLLISSCYGLNA-----LD---VDAPRLLSFIFDLN  213 (285)
Q Consensus       154 ~~l~----~~cp~Le~L~l~~c~~~~~~~---i----~-~~~L~~L~l~~~~~~~~-----~~---~~~p~L~~l~~~~~  213 (285)
                      ..+.    ..+++|++|++++|. ++...   +    . .++|++|++++|. +..     +.   ...++|++|+++++
T Consensus       144 ~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N  221 (372)
T 3un9_A          144 KDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN  221 (372)
T ss_dssp             HHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred             HHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence            5543    357889999999885 32211   1    1 2678888888875 221     10   13457777777776


Q ss_pred             c
Q 041569          214 P  214 (285)
Q Consensus       214 ~  214 (285)
                      .
T Consensus       222 ~  222 (372)
T 3un9_A          222 G  222 (372)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.13  E-value=1.9e-07  Score=77.99  Aligned_cols=138  Identities=15%  Similarity=0.158  Sum_probs=97.4

Q ss_pred             CCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-Ecc-CCcceEEEee
Q 041569          116 KLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-ISS-NKLEHLLISS  191 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~-~~L~~L~l~~  191 (285)
                      .++..+.++++.+..  ....+++|++|++.++.+++-.   -+..+++|+.|++++|. ++.+. +.. ++|+.|++++
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCS
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCC
Confidence            445556666665554  2346899999999999885422   26679999999999985 33221 333 8999999999


Q ss_pred             cCCCceEE-EeCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569          192 CYGLNALD-VDAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVET  266 (285)
Q Consensus       192 ~~~~~~~~-~~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~  266 (285)
                      +. +..+. +..++|++|+++++.+.    +...++|+.++++...+...+         .+..+++|+.|+++.+....
T Consensus        95 N~-l~~l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~---------~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           95 NR-LKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV---------MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             SC-CSCCTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG---------GGGGCTTCCEEECTTSCCCB
T ss_pred             Cc-cCCcCccccCcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh---------HHccCCCCCEEECCCCcCcc
Confidence            96 22221 11289999999998742    334568888888876665442         35678999999998888876


Q ss_pred             C
Q 041569          267 N  267 (285)
Q Consensus       267 ~  267 (285)
                      .
T Consensus       165 ~  165 (263)
T 1xeu_A          165 T  165 (263)
T ss_dssp             C
T ss_pred             h
Confidence            5

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.12  E-value=3e-06  Score=78.39  Aligned_cols=156  Identities=15%  Similarity=0.077  Sum_probs=97.8

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecCCCccccccceEEeeeeecChHHHHHHHhCCCccceeee
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSI  168 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  168 (285)
                      ++++.|+++.  ....  .+|   ..+++|+.|++++|.+...+.-..+|++|+|.++.++.  +..   .+++|+.|++
T Consensus        80 ~~L~~L~Ls~--N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQ--NALI--SLP---ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTM--LPE---LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCS--SCCS--CCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC--CCC---CCTTCCEEEC
T ss_pred             CCCCEEECcC--CCCc--ccc---cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCC--CCC---cCccccEEeC
Confidence            4688887766  2222  455   23688999999988776522212288999998887743  111   5788999999


Q ss_pred             ecCCCcCeEEEccCCcceEEEeecCCCceEEEeCCCccEEEEeeCcEeee--cCCCc-------ccceeccccCCCCChh
Q 041569          169 SHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNPIPII--STNAL-------CPWNVTLDCDSNLDCD  239 (285)
Q Consensus       169 ~~c~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~~~~~~--~~~~L-------~~l~i~~~~~~~~~~~  239 (285)
                      +++. ++.+.-..++|+.|+++++. +..+....++|+.|+++++.+...  ..++|       +.++++.+.+..++..
T Consensus       148 s~N~-l~~lp~~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~  225 (571)
T 3cvr_A          148 DNNQ-LTMLPELPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPEN  225 (571)
T ss_dssp             CSSC-CSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCGG
T ss_pred             CCCc-cCcCCCcCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCHH
Confidence            8875 33222223788899988885 222221227899998888863210  22256       7777777666655441


Q ss_pred             hHHHHHHHhccCCCceEEEEEeCCCcc
Q 041569          240 WFLSLKEFLGASSQIERLCIDFSSVET  266 (285)
Q Consensus       240 ~~~~l~~~l~~~~~L~~L~L~~~~~~~  266 (285)
                              +..+++|+.|+|+.+....
T Consensus       226 --------l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          226 --------ILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             --------GGGSCTTEEEECCSSSCCH
T ss_pred             --------HhcCCCCCEEEeeCCcCCC
Confidence                    2348889999888877753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.07  E-value=1.7e-06  Score=80.59  Aligned_cols=95  Identities=18%  Similarity=0.172  Sum_probs=49.6

Q ss_pred             CccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc----CCcceEE
Q 041569          117 LLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS----NKLEHLL  188 (285)
Q Consensus       117 ~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~----~~L~~L~  188 (285)
                      ++++|+|+++.+..    ...++++|++|+|+++.++.-. ...+..+++|++|+++++. ++.+....    ++|++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEE
Confidence            56667777665543    1234666777777666542100 0113456667777776663 44332211    5666666


Q ss_pred             EeecCCCceE---EE-eCCCccEEEEeeCc
Q 041569          189 ISSCYGLNAL---DV-DAPRLLSFIFDLNP  214 (285)
Q Consensus       189 l~~~~~~~~~---~~-~~p~L~~l~~~~~~  214 (285)
                      +.++. +..+   .+ ..++|++|++.++.
T Consensus       131 Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~  159 (635)
T 4g8a_A          131 AVETN-LASLENFPIGHLKTLKELNVAHNL  159 (635)
T ss_dssp             CTTSC-CCCSTTCCCTTCTTCCEEECCSSC
T ss_pred             CCCCc-CCCCChhhhhcCcccCeeccccCc
Confidence            66653 2211   12 34666666666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.07  E-value=1.6e-06  Score=80.10  Aligned_cols=153  Identities=12%  Similarity=0.069  Sum_probs=105.8

Q ss_pred             CCccEEEEcCeeecC-C-CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-----Ecc-CCcceE
Q 041569          116 KLLTSLKLVGCKLEL-P-SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-----ISS-NKLEHL  187 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~-~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-----i~~-~~L~~L  187 (285)
                      .+|++|+++++.+.. . ...+++|++|++.++.+++... ..+..+++|+.|+++++. ++.+.     +.. ++|+.|
T Consensus       331 ~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L  408 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETL  408 (562)
T ss_dssp             CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT-TTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEE
T ss_pred             CcceEEEccCCCcccccCccCCCCceEEECCCCccccchh-hhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEE
Confidence            458888888887665 2 2578999999999998865322 224679999999999985 33221     222 899999


Q ss_pred             EEeecCCCce-EE----EeCCCccEEEEeeCcEee----ecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEE
Q 041569          188 LISSCYGLNA-LD----VDAPRLLSFIFDLNPIPI----ISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLC  258 (285)
Q Consensus       188 ~l~~~~~~~~-~~----~~~p~L~~l~~~~~~~~~----~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~  258 (285)
                      +++++. +.. +.    ...++|+.|+++++.+.-    ...++|+.++++...+..++.       .+ ..+++|+.|+
T Consensus       409 ~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~-------~~-~~l~~L~~L~  479 (562)
T 3a79_B          409 DVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPK-------DV-THLQALQELN  479 (562)
T ss_dssp             ECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCT-------TT-TSSCCCSEEE
T ss_pred             ECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccCh-------hh-cCCCCCCEEE
Confidence            999986 222 21    246899999999987421    111589999998876665544       22 2789999999


Q ss_pred             EEeCCCccCCCchhhhhhhhee
Q 041569          259 IDFSSVETNSEDATLHFLYKLR  280 (285)
Q Consensus       259 L~~~~~~~~~~~~~f~~L~~L~  280 (285)
                      |+.+.....+.. .|..+++|+
T Consensus       480 L~~N~l~~l~~~-~~~~l~~L~  500 (562)
T 3a79_B          480 VASNQLKSVPDG-VFDRLTSLQ  500 (562)
T ss_dssp             CCSSCCCCCCTT-STTTCTTCC
T ss_pred             CCCCCCCCCCHH-HHhcCCCCC
Confidence            999888865443 244555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.06  E-value=1.8e-07  Score=70.87  Aligned_cols=55  Identities=16%  Similarity=0.068  Sum_probs=39.1

Q ss_pred             cCCccEEEEcCeeec--C---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCC
Q 041569          115 AKLLTSLKLVGCKLE--L---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCH  172 (285)
Q Consensus       115 ~~~L~~L~L~~~~~~--~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  172 (285)
                      .++|+.|++++|.+.  .   ....+++|++|++.++.++..   ..+..+++|+.|++++|.
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~   75 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNR   75 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCc
Confidence            367888888888776  2   224578888888888877443   345667888888887775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.05  E-value=1.4e-05  Score=72.04  Aligned_cols=55  Identities=20%  Similarity=0.066  Sum_probs=26.0

Q ss_pred             ccCcCCccEEEEcCeeecCCCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569          112 IFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC  171 (285)
Q Consensus       112 ~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  171 (285)
                      +..+++|+.|++++|.+...+...++|++|++.++.++.     +-...++|+.|++++|
T Consensus       233 ~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~N  287 (454)
T 1jl5_A          233 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-----LPELPQSLTFLDVSEN  287 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS
T ss_pred             cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-----cCcccCcCCEEECcCC
Confidence            334555666666555544322223555555555554422     0112355555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.04  E-value=5.3e-06  Score=72.44  Aligned_cols=127  Identities=20%  Similarity=0.150  Sum_probs=78.2

Q ss_pred             HCCCceEEEEeeeCCC------ccccCCccccCcCCccEEEEcCee-ecCCCccccccceEEeeeeecChHHHHHHHh-C
Q 041569           88 ENGLEVLDFMVIADEN------TYYALPQTIFSAKLLTSLKLVGCK-LELPSFTCAHLKKLLLSEFPLNDRELHHLIS-K  159 (285)
Q Consensus        88 ~~~l~~L~l~~~~~~~------~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~  159 (285)
                      .++++.|.+.......      ....+...+..+|+|++|.|+++. +.......++|++|.|..+.++++.+..+.. .
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~  217 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD  217 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSB
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHcc
Confidence            4799999875421100      011233444567999999999873 2223345899999999999999998888764 6


Q ss_pred             CCccceeeeecCCC-------cCeE--EEc---cCCcceEEEeecCCC----ceEE--EeCCCccEEEEeeCc
Q 041569          160 CPLLEDLSISHCHS-------LGRI--MIS---SNKLEHLLISSCYGL----NALD--VDAPRLLSFIFDLNP  214 (285)
Q Consensus       160 cp~Le~L~l~~c~~-------~~~~--~i~---~~~L~~L~l~~~~~~----~~~~--~~~p~L~~l~~~~~~  214 (285)
                      +|+|++|+|..+.+       +..+  .+.   .|+|+.|.+.+|...    ..+.  -..|+|++|+++.+.
T Consensus       218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            99999999964321       1110  111   267777777776411    0010  024566666665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.02  E-value=1.5e-06  Score=67.75  Aligned_cols=126  Identities=16%  Similarity=0.101  Sum_probs=71.4

Q ss_pred             cCcCCccEEEEcCeeecC-C-Ccc-ccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE---cc-CCcc
Q 041569          113 FSAKLLTSLKLVGCKLEL-P-SFT-CAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI---SS-NKLE  185 (285)
Q Consensus       113 ~~~~~L~~L~L~~~~~~~-~-~~~-~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i---~~-~~L~  185 (285)
                      ..+++|+.|++++|.+.. . ... .++|+.|+++++.+++-   ..+..+++|+.|+++++. ++.+..   .. ++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence            456788888888887665 2 122 34788888888876542   235567788888887764 333221   11 5666


Q ss_pred             eEEEeecCCCceEE----E-eCCCccEEEEeeCcEeeecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEE
Q 041569          186 HLLISSCYGLNALD----V-DAPRLLSFIFDLNPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCID  260 (285)
Q Consensus       186 ~L~l~~~~~~~~~~----~-~~p~L~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  260 (285)
                      .|+++++. +..+.    + ..|+|+.|++.++.                  +...+...    ...+..+|+|+.|+++
T Consensus        92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~------------------i~~~~~~~----~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNP------------------VTNKKHYR----LYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG------------------GGGSTTHH----HHHHHHCTTCSEETTE
T ss_pred             EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC------------------CCCcHhHH----HHHHHHCCccceeCCC
Confidence            66666653 11111    1 34555555555543                  22111111    1356778888888887


Q ss_pred             eCCCc
Q 041569          261 FSSVE  265 (285)
Q Consensus       261 ~~~~~  265 (285)
                      .....
T Consensus       149 ~n~~~  153 (176)
T 1a9n_A          149 KVKLK  153 (176)
T ss_dssp             ECCHH
T ss_pred             cCCHH
Confidence            76654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.01  E-value=6.7e-06  Score=71.38  Aligned_cols=179  Identities=16%  Similarity=0.088  Sum_probs=101.8

Q ss_pred             CCCceEEEEeeeCCCccccCCccc-cCcCCccEEEEcCeeecC--C---CccccccceEE-eeeeecChHHHHHHHhCCC
Q 041569           89 NGLEVLDFMVIADENTYYALPQTI-FSAKLLTSLKLVGCKLEL--P---SFTCAHLKKLL-LSEFPLNDRELHHLISKCP  161 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~--~---~~~~~~L~~L~-L~~~~~~~~~l~~l~~~cp  161 (285)
                      .++++|+++.  .  .-..+|... ..+++|++|+|++|.+..  .   ..++++++++. +.+..++.-. ...+..++
T Consensus        30 ~~l~~L~Ls~--N--~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~  104 (350)
T 4ay9_X           30 RNAIELRFVL--T--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLP  104 (350)
T ss_dssp             TTCSEEEEES--C--CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCT
T ss_pred             CCCCEEEccC--C--cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhcc
Confidence            4688888776  2  223455544 447899999999886532  2   23456666544 4444332110 11245688


Q ss_pred             ccceeeeecCCCcCeEE----EccCCcceEEEeecCCCceEEEe-----CCCccEEEEeeCcEeeecC-----CCcccce
Q 041569          162 LLEDLSISHCHSLGRIM----ISSNKLEHLLISSCYGLNALDVD-----APRLLSFIFDLNPIPIIST-----NALCPWN  227 (285)
Q Consensus       162 ~Le~L~l~~c~~~~~~~----i~~~~L~~L~l~~~~~~~~~~~~-----~p~L~~l~~~~~~~~~~~~-----~~L~~l~  227 (285)
                      +|+.|+++++. ++.+.    ....++..|.+..+..+..+...     ...++.|.+.++.+.....     .+++.+.
T Consensus       105 ~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~  183 (350)
T 4ay9_X          105 NLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN  183 (350)
T ss_dssp             TCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred             ccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHh
Confidence            99999998874 22211    12256667777666555555421     2457778887776432211     2455555


Q ss_pred             ecc-ccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhheee
Q 041569          228 VTL-DCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLRL  281 (285)
Q Consensus       228 i~~-~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~l  281 (285)
                      +.. ..++.++.       +.++.+++|+.|+|+.+.+...+... |.+|++|+.
T Consensus       184 l~~~n~l~~i~~-------~~f~~l~~L~~LdLs~N~l~~lp~~~-~~~L~~L~~  230 (350)
T 4ay9_X          184 LSDNNNLEELPN-------DVFHGASGPVILDISRTRIHSLPSYG-LENLKKLRA  230 (350)
T ss_dssp             CTTCTTCCCCCT-------TTTTTEECCSEEECTTSCCCCCCSSS-CTTCCEEEC
T ss_pred             hccCCcccCCCH-------HHhccCcccchhhcCCCCcCccChhh-hccchHhhh
Confidence            543 34444443       34566788888888877777655433 555666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.99  E-value=1.1e-06  Score=76.84  Aligned_cols=77  Identities=22%  Similarity=0.286  Sum_probs=40.4

Q ss_pred             ccccceEEeeeeecC--------hHHHHHHHhCCCccceeeeecCCCcCeEEEccCCcceEEEeecCC----CceEEE-e
Q 041569          135 CAHLKKLLLSEFPLN--------DRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYG----LNALDV-D  201 (285)
Q Consensus       135 ~~~L~~L~L~~~~~~--------~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~~~L~~L~l~~~~~----~~~~~~-~  201 (285)
                      +++|+.|.+..+...        ...+..++..+|+|++|.+.+|.+..-..+..++|++|++..|.-    +..+.. .
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~  217 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD  217 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSB
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHcc
Confidence            555666655443221        123556667777777777776633221122346777777766541    111111 3


Q ss_pred             CCCccEEEEe
Q 041569          202 APRLLSFIFD  211 (285)
Q Consensus       202 ~p~L~~l~~~  211 (285)
                      .|+|++|++.
T Consensus       218 lp~L~~L~L~  227 (362)
T 2ra8_A          218 LPNLEKLVLY  227 (362)
T ss_dssp             CTTCCEEEEE
T ss_pred             CCCCcEEEEe
Confidence            5777777764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.95  E-value=3.6e-07  Score=72.79  Aligned_cols=103  Identities=20%  Similarity=0.231  Sum_probs=56.5

Q ss_pred             CCccccCcCCccEEEEcCeeecC-C-CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-Ecc-CC
Q 041569          108 LPQTIFSAKLLTSLKLVGCKLEL-P-SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-ISS-NK  183 (285)
Q Consensus       108 l~~~~~~~~~L~~L~L~~~~~~~-~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~-~~  183 (285)
                      +|..+..+++|+.|++++|.+.. + ...+++|+.|++.++.++.  +......+|+|+.|++++|. ++.+. +.. ++
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~  116 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQ-IASLSGIEKLVN  116 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHH
T ss_pred             hhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCc-CCcCCccccCCC
Confidence            33355556777777777776654 2 2246777777777776642  22233445777777777763 22211 111 56


Q ss_pred             cceEEEeecCCCceEE----E-eCCCccEEEEeeCc
Q 041569          184 LEHLLISSCYGLNALD----V-DAPRLLSFIFDLNP  214 (285)
Q Consensus       184 L~~L~l~~~~~~~~~~----~-~~p~L~~l~~~~~~  214 (285)
                      |+.|++.++. +..+.    + ..|+|++|++.++.
T Consensus       117 L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          117 LRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             SSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence            6666666653 22110    1 35667777766654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.95  E-value=3.9e-06  Score=73.19  Aligned_cols=104  Identities=25%  Similarity=0.236  Sum_probs=64.7

Q ss_pred             ccCCccccCcCCccEEEEcCeeecC----CCc-cccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEc
Q 041569          106 YALPQTIFSAKLLTSLKLVGCKLEL----PSF-TCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMIS  180 (285)
Q Consensus       106 ~~l~~~~~~~~~L~~L~L~~~~~~~----~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~  180 (285)
                      ..+|..+  .++++.|+|+++.+..    ... .+++|++|+|.++.++.-.- ..+..+++|+.|+++++. ++.+.-.
T Consensus        31 ~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~  106 (361)
T 2xot_A           31 PNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNH-LHTLDEF  106 (361)
T ss_dssp             SSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSC-CCEECTT
T ss_pred             CccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCc-CCcCCHH
Confidence            3455433  2468889999887765    122 68889999998887642211 124568889999998875 4433221


Q ss_pred             ---c-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCc
Q 041569          181 ---S-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNP  214 (285)
Q Consensus       181 ---~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~  214 (285)
                         . ++|+.|++.++. +..+.   + ..++|+.|+++++.
T Consensus       107 ~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~  147 (361)
T 2xot_A          107 LFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ  147 (361)
T ss_dssp             TTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred             HhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc
Confidence               1 677777777763 33332   1 34667777776665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.95  E-value=1.9e-06  Score=69.89  Aligned_cols=96  Identities=13%  Similarity=0.187  Sum_probs=57.6

Q ss_pred             CCccEEEEcCeeecC--C---CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE---Ecc-CCcce
Q 041569          116 KLLTSLKLVGCKLEL--P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM---ISS-NKLEH  186 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~--~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---i~~-~~L~~  186 (285)
                      +.++.|+|+++.+..  .   ...+++|++|+|.++.++.-. ...+..+++|+.|+++++. ++.+.   +.. ++|+.
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~  109 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKT  109 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCE
Confidence            457888888887654  1   235788888888888663211 1124567888888888774 23222   111 67777


Q ss_pred             EEEeecCCCceEE---E-eCCCccEEEEeeCc
Q 041569          187 LLISSCYGLNALD---V-DAPRLLSFIFDLNP  214 (285)
Q Consensus       187 L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~  214 (285)
                      |+++++. +..+.   + ..++|+.|+++++.
T Consensus       110 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~  140 (220)
T 2v70_A          110 LMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ  140 (220)
T ss_dssp             EECTTSC-CCCBCTTSSTTCTTCSEEECTTSC
T ss_pred             EECCCCc-CCeECHhHcCCCccCCEEECCCCc
Confidence            7777764 22221   1 34666666666654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.90  E-value=2.5e-06  Score=76.32  Aligned_cols=39  Identities=28%  Similarity=0.488  Sum_probs=36.2

Q ss_pred             CCCcCCCCCHHHHHHHhcCCChhhHHhhhhcccchhhcc
Q 041569            4 TVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQ   42 (285)
Q Consensus         4 ~~d~~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~lw   42 (285)
                      ..|.++.||+|++.+||+||+.++++++++|||+|+++.
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~   49 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   49 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            458899999999999999999999999999999999863

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.82  E-value=5e-06  Score=66.47  Aligned_cols=97  Identities=21%  Similarity=0.192  Sum_probs=62.6

Q ss_pred             cCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE---cc-CCcce
Q 041569          115 AKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI---SS-NKLEH  186 (285)
Q Consensus       115 ~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i---~~-~~L~~  186 (285)
                      .++|++|+++++.+.. .   ...+++|++|++.++.++.-. ...+..+++|++|+++++. ++.+..   .. ++|+.
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCE
Confidence            4589999999997765 2   246899999999998774211 1234578999999999875 332221   11 67777


Q ss_pred             EEEeecCCCceEE---E-eCCCccEEEEeeCc
Q 041569          187 LLISSCYGLNALD---V-DAPRLLSFIFDLNP  214 (285)
Q Consensus       187 L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~  214 (285)
                      |++.++. +..+.   + ..++|++|++.++.
T Consensus       105 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  135 (208)
T 2o6s_A          105 LALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ  135 (208)
T ss_dssp             EECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEcCCCc-CcccCHhHhccCCcCCEEECCCCc
Confidence            7777763 22221   1 24666666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.80  E-value=7.4e-06  Score=66.72  Aligned_cols=122  Identities=16%  Similarity=0.102  Sum_probs=77.2

Q ss_pred             cccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE-
Q 041569          105 YYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI-  179 (285)
Q Consensus       105 ~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i-  179 (285)
                      ...+|..+  .++|+.|+|+++.+..    ....+++|++|+|.++.++.-. ...+..+++|+.|+++++. ++.+.- 
T Consensus        31 l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~  106 (229)
T 3e6j_A           31 HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQ-LTVLPSA  106 (229)
T ss_dssp             CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred             cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCc-CCccChh
Confidence            34455433  3789999999998765    2346899999999999773211 1224678999999999874 443321 


Q ss_pred             --cc-CCcceEEEeecCCCceEE---EeCCCccEEEEeeCcEee------ecCCCcccceeccc
Q 041569          180 --SS-NKLEHLLISSCYGLNALD---VDAPRLLSFIFDLNPIPI------ISTNALCPWNVTLD  231 (285)
Q Consensus       180 --~~-~~L~~L~l~~~~~~~~~~---~~~p~L~~l~~~~~~~~~------~~~~~L~~l~i~~~  231 (285)
                        .. ++|+.|++.++. +..+.   ...++|+.|++.++.+..      ...++|+.+++..+
T Consensus       107 ~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          107 VFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             TTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             HhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence              11 788888888874 33332   145777777777765321      12235555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.80  E-value=9.5e-06  Score=70.74  Aligned_cols=120  Identities=21%  Similarity=0.208  Sum_probs=76.6

Q ss_pred             CCCceEEEEeeeCCCccccCCcccc--CcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIF--SAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPL  162 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~  162 (285)
                      ..++.|+++.  .  ....++...+  .+++|+.|+|++|.+..    ....+++|++|+|.++.++.-. ...+..+++
T Consensus        39 ~~l~~L~Ls~--N--~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~  113 (361)
T 2xot_A           39 SYTALLDLSH--N--NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD-EFLFSDLQA  113 (361)
T ss_dssp             TTCSEEECCS--S--CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTT
T ss_pred             CCCCEEECCC--C--CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC-HHHhCCCcC
Confidence            4577777665  2  2223333333  67889999999887755    2346789999999988763211 122456899


Q ss_pred             cceeeeecCCCcCeEEE---cc-CCcceEEEeecCCCceEE-------EeCCCccEEEEeeCcE
Q 041569          163 LEDLSISHCHSLGRIMI---SS-NKLEHLLISSCYGLNALD-------VDAPRLLSFIFDLNPI  215 (285)
Q Consensus       163 Le~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~~~~~~~-------~~~p~L~~l~~~~~~~  215 (285)
                      |+.|+++++. ++.+..   .. ++|+.|++.++. +..+.       ...++|+.|+++++.+
T Consensus       114 L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          114 LEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            9999998875 443321   11 789999998884 33222       2367788888877753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.77  E-value=1.1e-05  Score=65.32  Aligned_cols=105  Identities=15%  Similarity=0.183  Sum_probs=66.5

Q ss_pred             cccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE-
Q 041569          105 YYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI-  179 (285)
Q Consensus       105 ~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i-  179 (285)
                      ...+|..+.  ++|+.|+++++.+..    ....+++|++|+|.++.++.-. ...+..+++|+.|+++++. ++.+.- 
T Consensus        23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~   98 (220)
T 2v9t_B           23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNK-ITELPKS   98 (220)
T ss_dssp             CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSC-CCCCCTT
T ss_pred             cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCc-CCccCHh
Confidence            344555433  689999999987655    2245789999999988774221 1124567899999998874 333221 


Q ss_pred             --cc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCc
Q 041569          180 --SS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNP  214 (285)
Q Consensus       180 --~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~  214 (285)
                        .. ++|+.|++.++. +..+.   + ..++|+.|+++++.
T Consensus        99 ~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  139 (220)
T 2v9t_B           99 LFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK  139 (220)
T ss_dssp             TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             HccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc
Confidence              11 678888887774 22221   1 34677777777765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.76  E-value=1e-05  Score=65.46  Aligned_cols=121  Identities=12%  Similarity=0.111  Sum_probs=78.9

Q ss_pred             CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569           90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED  165 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  165 (285)
                      .+++|+++.  .......-+..+..+++|+.|+|+++.+..    ....+++|++|+|.++.++.-. ...+..+++|+.
T Consensus        33 ~~~~L~L~~--N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~  109 (220)
T 2v70_A           33 YTAELRLNN--NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ-HKMFKGLESLKT  109 (220)
T ss_dssp             TCSEEECCS--SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-GGGGTTCSSCCE
T ss_pred             CCCEEEcCC--CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC-HhHhcCCcCCCE
Confidence            456666554  222211112234568999999999997765    2346899999999999773221 123567899999


Q ss_pred             eeeecCCCcCeEE---Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcE
Q 041569          166 LSISHCHSLGRIM---ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPI  215 (285)
Q Consensus       166 L~l~~c~~~~~~~---i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~  215 (285)
                      |+++++. ++.+.   +.. ++|+.|++.++. +..+.   + ..++|++|++.++.+
T Consensus       110 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          110 LMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             EECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             EECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence            9999885 33221   222 789999999884 33321   1 467888888888763

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.74  E-value=1e-05  Score=64.60  Aligned_cols=134  Identities=20%  Similarity=0.191  Sum_probs=84.3

Q ss_pred             CCCceEEEEeeeCCCccccCCccc-cCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTI-FSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      .+++.++++.  ..  ...++... ..+++|++|+++++.+.. .   ...+++|++|++.++.++.-. ...+..+++|
T Consensus        28 ~~l~~L~l~~--n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L  102 (208)
T 2o6s_A           28 AQTTYLDLET--NS--LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP-NGVFDKLTQL  102 (208)
T ss_dssp             TTCSEEECCS--SC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred             CCCcEEEcCC--Cc--cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC-HhHhcCccCC
Confidence            3577777765  22  22344433 457899999999887765 2   245789999999988774211 1224578899


Q ss_pred             ceeeeecCCCcCeEEE---cc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEeeecCCCcccceecc
Q 041569          164 EDLSISHCHSLGRIMI---SS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIPIISTNALCPWNVTL  230 (285)
Q Consensus       164 e~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~~~~~~~L~~l~i~~  230 (285)
                      ++|+++++. ++.+..   .. ++|+.|++.++. +..+.   + ..++|++|++.++.+. ...+.++.+.+..
T Consensus       103 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-~~~~~l~~L~~~~  174 (208)
T 2o6s_A          103 KELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-CTCPGIRYLSEWI  174 (208)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-CCTTTTHHHHHHH
T ss_pred             CEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-cCCCCHHHHHHHH
Confidence            999998874 333221   12 789999998874 33222   1 3678888888887532 1234566555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.72  E-value=1.3e-05  Score=65.21  Aligned_cols=121  Identities=20%  Similarity=0.134  Sum_probs=82.4

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE  164 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  164 (285)
                      .+++.|+++..  ... ...+..+..+++|+.|+|+++.+.. .   ...+++|+.|+|+++.++.-. ...+..+++|+
T Consensus        40 ~~L~~L~Ls~n--~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~  115 (229)
T 3e6j_A           40 TNAQILYLHDN--QIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP-SAVFDRLVHLK  115 (229)
T ss_dssp             TTCSEEECCSS--CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred             CCCCEEEcCCC--ccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC-hhHhCcchhhC
Confidence            57888887762  211 1223445568999999999998765 2   246899999999999774211 12245789999


Q ss_pred             eeeeecCCCcCeEE--Ecc-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcE
Q 041569          165 DLSISHCHSLGRIM--ISS-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPI  215 (285)
Q Consensus       165 ~L~l~~c~~~~~~~--i~~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~  215 (285)
                      .|+++++. ++.+.  +.. ++|+.|++.++. +..+.   + ..++|+.|++.++.+
T Consensus       116 ~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          116 ELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             EEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             eEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence            99999875 33321  112 899999999884 33332   2 468999999998863

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.72  E-value=1.5e-05  Score=70.87  Aligned_cols=38  Identities=21%  Similarity=0.417  Sum_probs=36.0

Q ss_pred             CCCcCCCCCHHHHHHHhcCCChhhHHhhhhcccchhhc
Q 041569            4 TVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQF   41 (285)
Q Consensus         4 ~~d~~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~l   41 (285)
                      ..|.++.||+|++.+||+||+.++++++++|||+|+.+
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            46899999999999999999999999999999999875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.70  E-value=1e-05  Score=65.40  Aligned_cols=120  Identities=13%  Similarity=0.154  Sum_probs=78.8

Q ss_pred             CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      .++++|++..  ..  ...++. .+..+++|+.|+|+++.+..    ....+++|++|+|+++.++.-. ..++..+++|
T Consensus        32 ~~l~~L~l~~--n~--i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQ--NT--IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP-KSLFEGLFSL  106 (220)
T ss_dssp             TTCCEEECCS--SC--CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred             cCCCEEECCC--Cc--CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC-HhHccCCCCC
Confidence            3577777665  21  223333 34457899999999987654    2346889999999999774211 1224568999


Q ss_pred             ceeeeecCCCcCeEEEc---c-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcE
Q 041569          164 EDLSISHCHSLGRIMIS---S-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPI  215 (285)
Q Consensus       164 e~L~l~~c~~~~~~~i~---~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~  215 (285)
                      +.|+++++. ++.+...   . ++|+.|++.++. +..+.   + ..++|++|++.++.+
T Consensus       107 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          107 QLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence            999999875 3333211   2 789999999885 33322   1 357888888888763

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.68  E-value=6.7e-06  Score=73.13  Aligned_cols=38  Identities=29%  Similarity=0.607  Sum_probs=35.6

Q ss_pred             CCCcCCCCCHH----HHHHHhcCCChhhHHhhhhcccchhhc
Q 041569            4 TVDQISDLPPS----IIHHIMTYLSAKEVTRTSILSTSWNQF   41 (285)
Q Consensus         4 ~~d~~~~LP~~----il~~I~s~L~~~~~~~~~~vskrWr~l   41 (285)
                      ..|.++.||+|    |+.+||+||+.++++++++|||+|+.+
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            46889999999    999999999999999999999999965

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.67  E-value=1.3e-06  Score=76.79  Aligned_cols=57  Identities=19%  Similarity=0.103  Sum_probs=27.7

Q ss_pred             CCccEEEEcCeeecC-----CC----ccccccceEEeeeeecChHHHHH---HHhCCCccceeeeecCC
Q 041569          116 KLLTSLKLVGCKLEL-----PS----FTCAHLKKLLLSEFPLNDRELHH---LISKCPLLEDLSISHCH  172 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~-----~~----~~~~~L~~L~L~~~~~~~~~l~~---l~~~cp~Le~L~l~~c~  172 (285)
                      ++|++|+|++|.+..     ..    ...++|++|+|.+|.+++.+...   .+..+++|++|++++|.
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~  194 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG  194 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence            455555555555433     00    12345555555555554433222   23445555555555553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.58  E-value=1.4e-05  Score=74.44  Aligned_cols=120  Identities=20%  Similarity=0.276  Sum_probs=82.4

Q ss_pred             CCCceEEEEeeeCCCccccCCc-cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQ-TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      ..+++|+++.  .  .-..++. .+..+++|+.|+|++|.+..    ...++++|++|+|.++.++.-. ...+.++++|
T Consensus        52 ~~~~~LdLs~--N--~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSF--N--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTT--S--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-GGGGTTCTTC
T ss_pred             cCCCEEEeeC--C--CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-HHHhcCCCCC
Confidence            3678888765  2  2234444 44568999999999997754    2346899999999999773211 1235678999


Q ss_pred             ceeeeecCCCcCeE---EEcc-CCcceEEEeecCCCceEE-----EeCCCccEEEEeeCcE
Q 041569          164 EDLSISHCHSLGRI---MISS-NKLEHLLISSCYGLNALD-----VDAPRLLSFIFDLNPI  215 (285)
Q Consensus       164 e~L~l~~c~~~~~~---~i~~-~~L~~L~l~~~~~~~~~~-----~~~p~L~~l~~~~~~~  215 (285)
                      ++|++++|. ++.+   .+.. ++|+.|++.++. +..+.     -..++|++|++.++.+
T Consensus       127 ~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          127 QKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             CEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccc
Confidence            999999884 3322   2333 789999999885 33222     2468899999988763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.51  E-value=8.9e-06  Score=63.27  Aligned_cols=118  Identities=14%  Similarity=0.088  Sum_probs=74.1

Q ss_pred             CCceEEEEeeeCCCccccCCccccC-cCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569           90 GLEVLDFMVIADENTYYALPQTIFS-AKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL  166 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  166 (285)
                      +++++.++.  ....  .++. +.. .++|+.|++++|.+..  ....+++|++|+++++.++.-. ..++..+|+|+.|
T Consensus        20 ~L~~L~l~~--n~l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L   93 (176)
T 1a9n_A           20 RDRELDLRG--YKIP--VIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTEL   93 (176)
T ss_dssp             SCEEEECTT--SCCC--SCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEE
T ss_pred             CceEEEeeC--CCCc--hhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC-cchhhcCCCCCEE
Confidence            566666654  2222  3343 334 4599999999987765  3356889999999999774311 1224568999999


Q ss_pred             eeecCCCcCeEE----Ecc-CCcceEEEeecC--CCce----EEEeCCCccEEEEeeCc
Q 041569          167 SISHCHSLGRIM----ISS-NKLEHLLISSCY--GLNA----LDVDAPRLLSFIFDLNP  214 (285)
Q Consensus       167 ~l~~c~~~~~~~----i~~-~~L~~L~l~~~~--~~~~----~~~~~p~L~~l~~~~~~  214 (285)
                      +++++. ++.+.    +.. ++|+.|++.++.  ....    +....|+|+.|++.++.
T Consensus        94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            999885 33222    222 789999999885  1111    11246777777666653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.39  E-value=7.6e-05  Score=64.63  Aligned_cols=165  Identities=17%  Similarity=0.162  Sum_probs=97.1

Q ss_pred             cccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEc
Q 041569          105 YYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMIS  180 (285)
Q Consensus       105 ~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~  180 (285)
                      ...+|..+  .+++++|+|+++.+..    ...++++|++|+|+++.+....=...+.++++|.++...++..++.+.-.
T Consensus        21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~   98 (350)
T 4ay9_X           21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   98 (350)
T ss_dssp             CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred             CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence            34556544  3689999999998765    23468999999999986521100112456788887777666667655322


Q ss_pred             ---c-CCcceEEEeecCCCceEE----EeCCCccEEEEeeCc-Ee-eec------CCCcccceeccccCCCCChhhHHHH
Q 041569          181 ---S-NKLEHLLISSCYGLNALD----VDAPRLLSFIFDLNP-IP-IIS------TNALCPWNVTLDCDSNLDCDWFLSL  244 (285)
Q Consensus       181 ---~-~~L~~L~l~~~~~~~~~~----~~~p~L~~l~~~~~~-~~-~~~------~~~L~~l~i~~~~~~~~~~~~~~~l  244 (285)
                         . ++|+.|++.++. +..+.    ....++..+.+.+.. +. +..      ...++.++++...+..++...    
T Consensus        99 ~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~----  173 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA----  173 (350)
T ss_dssp             SBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS----
T ss_pred             hhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh----
Confidence               2 799999999985 22221    245567777776643 21 111      124556666665555443321    


Q ss_pred             HHHhccCCCceEEEEE-eCCCccCCCchhhhhhhheee
Q 041569          245 KEFLGASSQIERLCID-FSSVETNSEDATLHFLYKLRL  281 (285)
Q Consensus       245 ~~~l~~~~~L~~L~L~-~~~~~~~~~~~~f~~L~~L~l  281 (285)
                         + ..++|++|.+. .+.....+.. .|..+++|+.
T Consensus       174 ---f-~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~  206 (350)
T 4ay9_X          174 ---F-NGTQLDELNLSDNNNLEELPND-VFHGASGPVI  206 (350)
T ss_dssp             ---S-TTEEEEEEECTTCTTCCCCCTT-TTTTEECCSE
T ss_pred             ---c-cccchhHHhhccCCcccCCCHH-HhccCcccch
Confidence               1 23567777774 3445544433 3555655543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.36  E-value=0.00013  Score=57.53  Aligned_cols=64  Identities=20%  Similarity=0.133  Sum_probs=30.2

Q ss_pred             cCCccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569          107 ALPQTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC  171 (285)
Q Consensus       107 ~l~~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  171 (285)
                      .+|..+...++|+.|+|+++.+.. .   ..++++|++|+|+++.++.-.- ..+..+++|+.|+++++
T Consensus        45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP-RTFDGLKSLRLLSLHGN  112 (193)
T ss_dssp             SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSS
T ss_pred             hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH-HHhCCCCCCCEEECCCC
Confidence            344444445566666666555443 1   2235555666665554421110 11234555555555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.36  E-value=0.00019  Score=56.53  Aligned_cols=104  Identities=20%  Similarity=0.192  Sum_probs=60.5

Q ss_pred             ccCCccccCcCCccEEEEcCeeecC--C---CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEc
Q 041569          106 YALPQTIFSAKLLTSLKLVGCKLEL--P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMIS  180 (285)
Q Consensus       106 ~~l~~~~~~~~~L~~L~L~~~~~~~--~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~  180 (285)
                      ..+|..+.  ++|+.|.++++.+..  .   ...+++|++|+|.++.++.-. ...+..+++|+.|+++++. ++.+...
T Consensus        21 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~   96 (192)
T 1w8a_A           21 KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENK-IKEISNK   96 (192)
T ss_dssp             SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCC-CCEECSS
T ss_pred             CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCc-CCccCHH
Confidence            34554433  378888888887655  1   235788888888888764221 1124567888888888764 3332221


Q ss_pred             ---c-CCcceEEEeecCCCceEE---E-eCCCccEEEEeeCc
Q 041569          181 ---S-NKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNP  214 (285)
Q Consensus       181 ---~-~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~  214 (285)
                         . ++|+.|++.++. +..+.   + ..|+|++|++.++.
T Consensus        97 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           97 MFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             SSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred             HhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence               1 567777776663 33221   1 24566666665554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.34  E-value=0.00012  Score=57.80  Aligned_cols=104  Identities=23%  Similarity=0.227  Sum_probs=62.2

Q ss_pred             ccCCccccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE---
Q 041569          106 YALPQTIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI---  179 (285)
Q Consensus       106 ~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i---  179 (285)
                      ..+|..+  .++|+.|.++++.+..   ....+++|++|+|+++.++.-. ...+..+++|+.|+++++. ++.+..   
T Consensus        23 ~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f   98 (193)
T 2wfh_A           23 KVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNR-LRCIPPRTF   98 (193)
T ss_dssp             SSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCBCCTTTT
T ss_pred             CcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCc-cCEeCHHHh
Confidence            3445433  2578888888887765   2235788888888888763211 1124567888888888774 333221   


Q ss_pred             cc-CCcceEEEeecCCCceEEE----eCCCccEEEEeeCc
Q 041569          180 SS-NKLEHLLISSCYGLNALDV----DAPRLLSFIFDLNP  214 (285)
Q Consensus       180 ~~-~~L~~L~l~~~~~~~~~~~----~~p~L~~l~~~~~~  214 (285)
                      .. ++|+.|++.++. +..+..    ..++|+.|++.++.
T Consensus        99 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           99 DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence            11 677777777763 332221    24666666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.33  E-value=0.00013  Score=56.62  Aligned_cols=96  Identities=22%  Similarity=0.220  Sum_probs=54.9

Q ss_pred             CCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE---cc-CCcceE
Q 041569          116 KLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI---SS-NKLEHL  187 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i---~~-~~L~~L  187 (285)
                      ++|+.|+++++.+.. .   ...+++|++|++.++.++.-. ...+..+++|+.|+++++. ++.+..   .. ++|+.|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEE
Confidence            578888888876654 1   235678888888877663211 1223567888888888764 332211   11 566666


Q ss_pred             EEeecCCCceEEE----eCCCccEEEEeeCc
Q 041569          188 LISSCYGLNALDV----DAPRLLSFIFDLNP  214 (285)
Q Consensus       188 ~l~~~~~~~~~~~----~~p~L~~l~~~~~~  214 (285)
                      ++.++. +..+..    ..++|++|++.++.
T Consensus       106 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          106 ALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             ECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence            666663 222221    24556666666553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.23  E-value=4.6e-05  Score=70.51  Aligned_cols=53  Identities=23%  Similarity=0.091  Sum_probs=23.9

Q ss_pred             CccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569          117 LLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC  171 (285)
Q Consensus       117 ~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  171 (285)
                      .|+.|+|++|.+..  ....+++|+.|+|+++.++  .+-..+..+++|+.|+++++
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N  496 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDN  496 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCC
Confidence            34555555554433  1123455555555555443  11112344555555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.15  E-value=0.00049  Score=58.90  Aligned_cols=90  Identities=12%  Similarity=0.071  Sum_probs=57.3

Q ss_pred             CCcceEEEeecCCCceEEE----eCCCccEEEEeeCcEee-----ecCCCcc-cceeccccCCCCChhhHHHHHHHhccC
Q 041569          182 NKLEHLLISSCYGLNALDV----DAPRLLSFIFDLNPIPI-----ISTNALC-PWNVTLDCDSNLDCDWFLSLKEFLGAS  251 (285)
Q Consensus       182 ~~L~~L~l~~~~~~~~~~~----~~p~L~~l~~~~~~~~~-----~~~~~L~-~l~i~~~~~~~~~~~~~~~l~~~l~~~  251 (285)
                      ++|+++++.++ .+..+.-    .+++|+++++.+....+     ...++|+ .+.++. .+..++.       ..+.+|
T Consensus       226 ~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-------~aF~~c  296 (329)
T 3sb4_A          226 PNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-------GAFMGC  296 (329)
T ss_dssp             TTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECT-------TTTTTC
T ss_pred             CCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEch-------hhhhCC
Confidence            57788877765 3444431    46788888887753222     2334677 777765 3333333       456789


Q ss_pred             CCceEEEEEeCCCccCCCchhhhhhhheee
Q 041569          252 SQIERLCIDFSSVETNSEDATLHFLYKLRL  281 (285)
Q Consensus       252 ~~L~~L~L~~~~~~~~~~~~~f~~L~~L~l  281 (285)
                      ++|+.+++.-+.+...+... |.++++|+.
T Consensus       297 ~~L~~l~l~~n~i~~I~~~a-F~~~~~L~~  325 (329)
T 3sb4_A          297 DNLRYVLATGDKITTLGDEL-FGNGVPSKL  325 (329)
T ss_dssp             TTEEEEEECSSCCCEECTTT-TCTTCCCCE
T ss_pred             ccCCEEEeCCCccCccchhh-hcCCcchhh
Confidence            99999999777776655443 777777764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.13  E-value=0.00013  Score=67.54  Aligned_cols=96  Identities=20%  Similarity=0.209  Sum_probs=67.7

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED  165 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  165 (285)
                      ..++.|+++.  .  ....+|. +..+++|+.|+|++|.+..   ....+++|++|+|+++.++.  +. -+..+++|+.
T Consensus       441 ~~L~~L~Ls~--n--~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~  512 (567)
T 1dce_A          441 ADVRVLHLAH--K--DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQE  512 (567)
T ss_dssp             TTCSEEECTT--S--CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCE
T ss_pred             cCceEEEecC--C--CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcE
Confidence            3577777655  2  2234665 7778999999999998765   23468999999999998854  22 4678999999


Q ss_pred             eeeecCCCcCeEE----Ecc-CCcceEEEeecC
Q 041569          166 LSISHCHSLGRIM----ISS-NKLEHLLISSCY  193 (285)
Q Consensus       166 L~l~~c~~~~~~~----i~~-~~L~~L~l~~~~  193 (285)
                      |+++++. ++.+.    +.. ++|+.|+++++.
T Consensus       513 L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          513 LLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             EECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             EECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence            9999885 33221    111 566666666664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.13  E-value=0.00026  Score=55.74  Aligned_cols=98  Identities=17%  Similarity=0.118  Sum_probs=66.5

Q ss_pred             CCceEEEEeeeCCCccccCCc--cccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           90 GLEVLDFMVIADENTYYALPQ--TIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      +++++.+..  ..  ...++.  .+...++|+.|+|+++.+..    ....+++|++|+|+++.++.-.- ..+...++|
T Consensus        30 ~l~~L~l~~--n~--i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L  104 (192)
T 1w8a_A           30 HTTELLLND--NE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQL  104 (192)
T ss_dssp             TCSEEECCS--CC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTC
T ss_pred             CCCEEECCC--Cc--CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH-HHhcCCCCC
Confidence            577777665  22  223333  25568999999999998765    23468999999999997743211 124568999


Q ss_pred             ceeeeecCCCcCeEEE---cc-CCcceEEEeecC
Q 041569          164 EDLSISHCHSLGRIMI---SS-NKLEHLLISSCY  193 (285)
Q Consensus       164 e~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~  193 (285)
                      +.|+++++. ++.+..   .. ++|+.|++.++.
T Consensus       105 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          105 KTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CEEECCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence            999999875 443321   12 789999998875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.13  E-value=3.9e-05  Score=60.28  Aligned_cols=37  Identities=16%  Similarity=0.157  Sum_probs=17.5

Q ss_pred             ccccceEEeeeeecChHHHH---HHHhCCCccceeeeecC
Q 041569          135 CAHLKKLLLSEFPLNDRELH---HLISKCPLLEDLSISHC  171 (285)
Q Consensus       135 ~~~L~~L~L~~~~~~~~~l~---~l~~~cp~Le~L~l~~c  171 (285)
                      .++|++|+|+++.+++++..   ..+..++.|++|++++|
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            34555555555555443322   22333455555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.09  E-value=0.00014  Score=57.10  Aligned_cols=94  Identities=13%  Similarity=0.093  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHH--CCCceEEEEeeeC-CCcc---ccCCccccCcCCccEEEEcCeeecC-----CC---ccccccceEE
Q 041569           77 PLFDKWIELATE--NGLEVLDFMVIAD-ENTY---YALPQTIFSAKLLTSLKLVGCKLEL-----PS---FTCAHLKKLL  142 (285)
Q Consensus        77 ~~~~~~l~~~~~--~~l~~L~l~~~~~-~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~-----~~---~~~~~L~~L~  142 (285)
                      ..+...+..+..  +.+++|++..  + ....   ..+...+..+++|++|+|++|.+..     .+   ...++|++|+
T Consensus        22 ~~~~~~l~~~l~~~~~L~~L~L~~--n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~   99 (185)
T 1io0_A           22 TDVEETLKRIQNNDPDLEEVNLNN--IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLN   99 (185)
T ss_dssp             CCHHHHHHHHHTTCTTCCEEECTT--CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred             cHHHHHHHHHHhcCCCCCEEEecC--CCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEE
Confidence            345666766665  4688888765  3 2222   2344455567899999999998765     11   2357899999


Q ss_pred             eeeeecChHHHHHH---HhCCCccceeee--ecCC
Q 041569          143 LSEFPLNDRELHHL---ISKCPLLEDLSI--SHCH  172 (285)
Q Consensus       143 L~~~~~~~~~l~~l---~~~cp~Le~L~l--~~c~  172 (285)
                      |+++.+++++...+   +..++.|++|++  .++.
T Consensus       100 L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~  134 (185)
T 1io0_A          100 VESNFISGSGILALVEALQSNTSLIELRIDNQSQP  134 (185)
T ss_dssp             CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred             CcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence            99999988775544   566889999999  6553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.06  E-value=0.00037  Score=53.91  Aligned_cols=99  Identities=18%  Similarity=0.231  Sum_probs=68.2

Q ss_pred             CCCceEEEEeeeCCCccccCCccc-cCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTI-FSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      .+++++++..  ..  ...++... ..+++|++|+++++.+.. .   ...+++|++|++.++.++.-. ...+..+++|
T Consensus        28 ~~l~~L~l~~--n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L  102 (177)
T 2o6r_A           28 SSATRLELES--NK--LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP-NGVFDKLTQL  102 (177)
T ss_dssp             TTCSEEECCS--SC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred             CCCcEEEeCC--Cc--ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC-HHHhhCCccc
Confidence            4678887765  22  22444443 457999999999998765 2   246899999999999774211 1234578999


Q ss_pred             ceeeeecCCCcCeEEE---cc-CCcceEEEeecC
Q 041569          164 EDLSISHCHSLGRIMI---SS-NKLEHLLISSCY  193 (285)
Q Consensus       164 e~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~  193 (285)
                      +.|+++++. ++.+..   .. ++|+.|++.++.
T Consensus       103 ~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          103 KELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence            999999884 443322   11 789999998875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.91  E-value=0.0023  Score=54.65  Aligned_cols=70  Identities=13%  Similarity=0.090  Sum_probs=40.6

Q ss_pred             CCCccEEEEeeCcEee------ecCCCcccceeccccCCCCChhhHHHHHHHhccCCCce-EEEEEeCCCccCCCchhhh
Q 041569          202 APRLLSFIFDLNPIPI------ISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIE-RLCIDFSSVETNSEDATLH  274 (285)
Q Consensus       202 ~p~L~~l~~~~~~~~~------~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~-~L~L~~~~~~~~~~~~~f~  274 (285)
                      +++|+++++.++.+..      ....+|+.+.++.. +..++.       ..+.+|++|+ .+.+.- .+...+.. .|.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-------~aF~~~~~L~~~l~l~~-~l~~I~~~-aF~  294 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-------RVFSNCGRLAGTLELPA-SVTAIEFG-AFM  294 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-------TTTTTCTTCCEEEEECT-TCCEECTT-TTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-------HHhhCChhccEEEEEcc-cceEEchh-hhh
Confidence            6788888887754221      22346777776543 333333       4467788888 888865 44333333 355


Q ss_pred             hhhheee
Q 041569          275 FLYKLRL  281 (285)
Q Consensus       275 ~L~~L~l  281 (285)
                      ++++|+-
T Consensus       295 ~c~~L~~  301 (329)
T 3sb4_A          295 GCDNLRY  301 (329)
T ss_dssp             TCTTEEE
T ss_pred             CCccCCE
Confidence            5666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.83  E-value=0.00014  Score=69.44  Aligned_cols=102  Identities=22%  Similarity=0.244  Sum_probs=66.2

Q ss_pred             CccccCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE--Ecc-C
Q 041569          109 PQTIFSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM--ISS-N  182 (285)
Q Consensus       109 ~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~--i~~-~  182 (285)
                      +..+...++|+.|+|++|.+..   ....+++|++|+|.++.++  .+-.-+..+++|+.|+|+++. ++.+.  +.. +
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence            3444557888999999887655   2346788899999888775  222225678889999998875 43321  111 6


Q ss_pred             CcceEEEeecCCCceEE--E-eCCCccEEEEeeCc
Q 041569          183 KLEHLLISSCYGLNALD--V-DAPRLLSFIFDLNP  214 (285)
Q Consensus       183 ~L~~L~l~~~~~~~~~~--~-~~p~L~~l~~~~~~  214 (285)
                      +|+.|++.++. +..+.  + ..++|+.|+++++.
T Consensus       294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             TCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred             CCCEEECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence            88888888874 33332  2 45788888887776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.83  E-value=0.00056  Score=53.97  Aligned_cols=97  Identities=18%  Similarity=0.126  Sum_probs=70.1

Q ss_pred             HCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-CC--ccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569           88 ENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PS--FTCAHLKKLLLSEFPLNDRELHHLISKCPLLE  164 (285)
Q Consensus        88 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~--~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  164 (285)
                      .++++.++++..  .  ...+| .+..+++|+.|++++|.+.. +.  ..+++|++|++.++.++.-  . -+..+++|+
T Consensus        47 l~~L~~L~ls~n--~--l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l--~-~~~~l~~L~  118 (198)
T 1ds9_A           47 LKACKHLALSTN--N--IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--S-GIEKLVNLR  118 (198)
T ss_dssp             TTTCSEEECSEE--E--ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH--H-HHHHHHHSS
T ss_pred             CCCCCEEECCCC--C--Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC--C-ccccCCCCC
Confidence            468899988763  2  22255 66678999999999998876 22  2468999999999988542  2 256789999


Q ss_pred             eeeeecCCCcCeEE----Ecc-CCcceEEEeecC
Q 041569          165 DLSISHCHSLGRIM----ISS-NKLEHLLISSCY  193 (285)
Q Consensus       165 ~L~l~~c~~~~~~~----i~~-~~L~~L~l~~~~  193 (285)
                      .|+++++. ++.+.    +.. ++|+.|++.++.
T Consensus       119 ~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          119 VLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             EEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence            99999885 33221    222 789999999875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.80  E-value=0.0022  Score=56.62  Aligned_cols=93  Identities=15%  Similarity=0.220  Sum_probs=51.0

Q ss_pred             CcCCccEEEEcCeeecC---CCccccccceEEeeee--ecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc---CCcc
Q 041569          114 SAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEF--PLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS---NKLE  185 (285)
Q Consensus       114 ~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~---~~L~  185 (285)
                      .|++|+.+.+.++.+..   .++.+.+|+.+.|...  .++...    ...|++|+.+.+..  +++.+.-.+   .+|+
T Consensus       178 ~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~a----F~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~  251 (401)
T 4fdw_A          178 YCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQA----FLKTSQLKTIEIPE--NVSTIGQEAFRESGIT  251 (401)
T ss_dssp             TCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTT----TTTCTTCCCEECCT--TCCEECTTTTTTCCCS
T ss_pred             CcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhH----hhCCCCCCEEecCC--CccCccccccccCCcc
Confidence            36777777777654433   3334567777777543  233332    45688888888764  233222211   5666


Q ss_pred             eEEEeecCCCceEE---E-eCCCccEEEEeeCc
Q 041569          186 HLLISSCYGLNALD---V-DAPRLLSFIFDLNP  214 (285)
Q Consensus       186 ~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~  214 (285)
                      .+.+..  .+..+.   + .+++|+++.+.+..
T Consensus       252 ~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          252 TVKLPN--GVTNIASRAFYYCPELAEVTTYGST  282 (401)
T ss_dssp             EEEEET--TCCEECTTTTTTCTTCCEEEEESSC
T ss_pred             EEEeCC--CccEEChhHhhCCCCCCEEEeCCcc
Confidence            666633  233332   1 45677777765543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.75  E-value=0.0011  Score=51.05  Aligned_cols=56  Identities=18%  Similarity=0.099  Sum_probs=31.7

Q ss_pred             CCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCC
Q 041569          116 KLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCH  172 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  172 (285)
                      ++|+.|+|+++.+..    ....+++|++|+|.++.++.-. ...+..+++|+.|+++++.
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCc
Confidence            567777777766554    1234667777777776553111 1123456667777776653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.64  E-value=0.0015  Score=50.44  Aligned_cols=55  Identities=15%  Similarity=0.077  Sum_probs=30.8

Q ss_pred             CCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569          116 KLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC  171 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  171 (285)
                      ++|+.|+|+++.+..    ....+++|++|+|.++.++.-. ..++..+++|+.|+++++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCC
Confidence            567777777766544    1234666777777766553210 112345666666666665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.52  E-value=0.00038  Score=66.32  Aligned_cols=98  Identities=21%  Similarity=0.217  Sum_probs=71.2

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-C--CccccccceEEeeeeecChHHHHHHHhCCCccce
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-P--SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLED  165 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  165 (285)
                      ..++.|+++.  .  ....+|..++.+++|++|+|++|.+.. +  ...+++|++|+|+++.++  .+-.-+..+++|+.
T Consensus       224 ~~L~~L~Ls~--n--~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          224 QLWHALDLSN--L--QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKY  297 (727)
T ss_dssp             CCCCEEECTT--S--CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSE
T ss_pred             CCCcEEECCC--C--CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCE
Confidence            4566666654  2  233678888889999999999998765 2  246899999999999875  22223567899999


Q ss_pred             eeeecCCCcCeEE--Ecc-CCcceEEEeecC
Q 041569          166 LSISHCHSLGRIM--ISS-NKLEHLLISSCY  193 (285)
Q Consensus       166 L~l~~c~~~~~~~--i~~-~~L~~L~l~~~~  193 (285)
                      |++++|. ++.+.  +.. ++|+.|++.++.
T Consensus       298 L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          298 FYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             EECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred             EECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence            9999884 44321  222 789999999886

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.04  E-value=0.0037  Score=48.26  Aligned_cols=79  Identities=16%  Similarity=0.056  Sum_probs=56.2

Q ss_pred             CCCceEEEEeeeCCCccccC-CccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYAL-PQTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      .+++.|+++..    ....+ |..+...++|+.|+|+++.+.. +   ...+++|++|+|.++.++.-. ...+..+++|
T Consensus        33 ~~L~~L~Ls~N----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLWLNNN----QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSL  107 (174)
T ss_dssp             TTCSEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred             CCCcEEEeCCC----CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC-HHHhccccCC
Confidence            46888877652    22334 3445568999999999998876 2   246899999999999774211 1225568999


Q ss_pred             ceeeeecCC
Q 041569          164 EDLSISHCH  172 (285)
Q Consensus       164 e~L~l~~c~  172 (285)
                      +.|+++++.
T Consensus       108 ~~L~L~~N~  116 (174)
T 2r9u_A          108 THIYLYNNP  116 (174)
T ss_dssp             SEEECCSSC
T ss_pred             CEEEeCCCC
Confidence            999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=95.85  E-value=0.0056  Score=46.95  Aligned_cols=79  Identities=19%  Similarity=0.142  Sum_probs=55.0

Q ss_pred             CCCceEEEEeeeCCCccccC-CccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYAL-PQTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      ..++.|+++..    ....+ +..+...++|+.|+|+++.+.. .   ...+++|++|+|.++.++.-. ...+..+++|
T Consensus        30 ~~l~~L~L~~N----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L  104 (170)
T 3g39_A           30 TTTQVLYLYDN----QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSL  104 (170)
T ss_dssp             TTCSEEECCSS----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred             CCCcEEEcCCC----cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC-HHHhcCCCCC
Confidence            46777777652    22334 3445568999999999998766 2   246899999999999774211 1225568999


Q ss_pred             ceeeeecCC
Q 041569          164 EDLSISHCH  172 (285)
Q Consensus       164 e~L~l~~c~  172 (285)
                      +.|+++++.
T Consensus       105 ~~L~L~~N~  113 (170)
T 3g39_A          105 THIWLLNNP  113 (170)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEeCCCC
Confidence            999998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.71  E-value=0.0053  Score=52.65  Aligned_cols=86  Identities=20%  Similarity=0.148  Sum_probs=50.8

Q ss_pred             cccCCccccCcCCccEEEEcC-eeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE
Q 041569          105 YYALPQTIFSAKLLTSLKLVG-CKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI  179 (285)
Q Consensus       105 ~~~l~~~~~~~~~L~~L~L~~-~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i  179 (285)
                      ...+|. +....+|+.|+|++ +.+.. .   ...+++|+.|+|+++.++.-. ...+..+++|+.|+|+++. ++.+..
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~   97 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNA-LESLSW   97 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSC-CSCCCS
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCc-cceeCH
Confidence            345666 66677788888875 66554 2   235778888888887663211 1124567888888887764 332211


Q ss_pred             c---cCCcceEEEeecC
Q 041569          180 S---SNKLEHLLISSCY  193 (285)
Q Consensus       180 ~---~~~L~~L~l~~~~  193 (285)
                      .   ..+|+.|.+.++.
T Consensus        98 ~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           98 KTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             TTTCSCCCCEEECCSSC
T ss_pred             HHcccCCceEEEeeCCC
Confidence            1   1236677766554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.48  E-value=0.0062  Score=50.53  Aligned_cols=79  Identities=20%  Similarity=0.142  Sum_probs=47.0

Q ss_pred             CCCceEEEEeeeCCC-ccccCCccccCcCCccEEEEcCeeecC--CCcccc--ccceEEeeeeecCh------HHHHHHH
Q 041569           89 NGLEVLDFMVIADEN-TYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCA--HLKKLLLSEFPLND------RELHHLI  157 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~--~L~~L~L~~~~~~~------~~l~~l~  157 (285)
                      +.++.|.++..  .. ....++..+..+++|+.|+|++|.+..  ....+.  +|++|.|.++.+..      .-...++
T Consensus       170 ~~L~~L~Ls~N--~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          170 PELLSLNLSNN--RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             TTCCEEECTTS--CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             CCCCEEECCCC--CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence            56777776652  21 112344444567888888888877654  112233  78888888776632      2234566


Q ss_pred             hCCCccceeeee
Q 041569          158 SKCPLLEDLSIS  169 (285)
Q Consensus       158 ~~cp~Le~L~l~  169 (285)
                      ..+|+|+.|+=.
T Consensus       248 ~~~P~L~~LDg~  259 (267)
T 3rw6_A          248 ERFPKLLRLDGH  259 (267)
T ss_dssp             HHCTTCCEESSC
T ss_pred             HHCcccCeECCc
Confidence            778888877644

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.74  E-value=0.017  Score=50.80  Aligned_cols=109  Identities=14%  Similarity=0.141  Sum_probs=51.7

Q ss_pred             cCcCCccEEEEcCe--eecC-CCccccccceEEeeeeec---ChHHHHHHHhCCCccceeeeecCCCcCeEEEcc----C
Q 041569          113 FSAKLLTSLKLVGC--KLEL-PSFTCAHLKKLLLSEFPL---NDRELHHLISKCPLLEDLSISHCHSLGRIMISS----N  182 (285)
Q Consensus       113 ~~~~~L~~L~L~~~--~~~~-~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~----~  182 (285)
                      |...+|+++.+...  .+.. ...+|++|+.+.+..+.+   +...+.     |.+|+.+.+..  +++.+.-.+    +
T Consensus       154 F~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~--~l~~I~~~aF~~~~  226 (401)
T 4fdw_A          154 FFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPV--TLKEIGSQAFLKTS  226 (401)
T ss_dssp             TTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCT--TCCEECTTTTTTCT
T ss_pred             cCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEe-----ecccCEEEeCC--chheehhhHhhCCC
Confidence            33335666666542  1111 234567777777765422   333321     56677776652  233222221    5


Q ss_pred             CcceEEEeecCCCceEEE---eCCCccEEEEeeCcEee-----ecCCCcccceecc
Q 041569          183 KLEHLLISSCYGLNALDV---DAPRLLSFIFDLNPIPI-----ISTNALCPWNVTL  230 (285)
Q Consensus       183 ~L~~L~l~~~~~~~~~~~---~~p~L~~l~~~~~~~~~-----~~~~~L~~l~i~~  230 (285)
                      +|+.+.+...  +..+.-   ...+|+++.+......+     ...++|+.+.+..
T Consensus       227 ~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          227 QLKTIEIPEN--VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYG  280 (401)
T ss_dssp             TCCCEECCTT--CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEES
T ss_pred             CCCEEecCCC--ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCC
Confidence            6666666542  232221   12467777764433222     2334666666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.63  E-value=0.04  Score=43.37  Aligned_cols=116  Identities=16%  Similarity=0.219  Sum_probs=62.5

Q ss_pred             ccccceEEeeee-ecChHHHHH---HHhCCCccceeeeecCCCcCeEEEc--------cCCcceEEEeecCCCceEEEeC
Q 041569          135 CAHLKKLLLSEF-PLNDRELHH---LISKCPLLEDLSISHCHSLGRIMIS--------SNKLEHLLISSCYGLNALDVDA  202 (285)
Q Consensus       135 ~~~L~~L~L~~~-~~~~~~l~~---l~~~cp~Le~L~l~~c~~~~~~~i~--------~~~L~~L~l~~~~~~~~~~~~~  202 (285)
                      -+.|++|+|.++ .+++++...   .+..-..|+.|+|++|. +++....        ..+|++|++..+. +..-    
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~----  113 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF-LTPE----  113 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHH----
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCc-CCHH----
Confidence            467888888875 776665433   34456778888888774 2211110        1455555555543 1000    


Q ss_pred             CCccEEEEeeCc---EeeecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          203 PRLLSFIFDLNP---IPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       203 p~L~~l~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                               |..   -.+.....|+++++.......++......+.+.+..-+.|++|.++++...
T Consensus       114 ---------Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          114 ---------LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             ---------HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             ---------HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence                     000   011222346666654321112333344566778888899999999876654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=91.93  E-value=0.058  Score=46.03  Aligned_cols=78  Identities=19%  Similarity=0.158  Sum_probs=46.0

Q ss_pred             CCceEEEEeeeCCCccccCC-ccccCcCCccEEEEcCeeecC-C---CccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569           90 GLEVLDFMVIADENTYYALP-QTIFSAKLLTSLKLVGCKLEL-P---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE  164 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~-~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  164 (285)
                      +++.|+++.  . .....++ ..+...++|+.|+|++|.+.. .   ...+++|+.|+|+++.++.-. ..++...+ |+
T Consensus        32 ~L~~L~l~~--~-n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~  106 (347)
T 2ifg_A           32 NLTELYIEN--Q-QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-WKTVQGLS-LQ  106 (347)
T ss_dssp             CCSEEECCS--C-SSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-STTTCSCC-CC
T ss_pred             CeeEEEccC--C-CCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC-HHHcccCC-ce
Confidence            577777652  0 1222334 334457888888888887655 1   245788888888888763211 01122233 88


Q ss_pred             eeeeecCC
Q 041569          165 DLSISHCH  172 (285)
Q Consensus       165 ~L~l~~c~  172 (285)
                      .|++.++.
T Consensus       107 ~l~l~~N~  114 (347)
T 2ifg_A          107 ELVLSGNP  114 (347)
T ss_dssp             EEECCSSC
T ss_pred             EEEeeCCC
Confidence            88887653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=91.84  E-value=0.043  Score=45.41  Aligned_cols=33  Identities=36%  Similarity=0.230  Sum_probs=16.1

Q ss_pred             CCccEEEEcCeeecC-C---C--ccccccceEEeeeeec
Q 041569          116 KLLTSLKLVGCKLEL-P---S--FTCAHLKKLLLSEFPL  148 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~-~---~--~~~~~L~~L~L~~~~~  148 (285)
                      ++|++|+|++|.+.. .   .  ..+++|+.|+|+++.+
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i  208 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL  208 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc
Confidence            455555555555433 0   0  1355555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=89.87  E-value=0.084  Score=41.50  Aligned_cols=96  Identities=13%  Similarity=0.123  Sum_probs=58.6

Q ss_pred             hhHHHHHHHHHHH--CCCceEEEEee-e-CCCccccCCccccCcCCccEEEEcCeeecC---CC-----ccccccceEEe
Q 041569           76 SPLFDKWIELATE--NGLEVLDFMVI-A-DENTYYALPQTIFSAKLLTSLKLVGCKLEL---PS-----FTCAHLKKLLL  143 (285)
Q Consensus        76 ~~~~~~~l~~~~~--~~l~~L~l~~~-~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~-----~~~~~L~~L~L  143 (285)
                      ...++..+.....  ..+++|.+... . .......+-..+....+|+.|+|++|.+.+   .+     ..-..|++|+|
T Consensus        26 ~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L  105 (197)
T 1pgv_A           26 DTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV  105 (197)
T ss_dssp             -CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred             CCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence            3456666766554  35777766431 0 001122333444556788888888888765   11     12467888888


Q ss_pred             eeeecChHHHHHHHh---CCCccceeeeecC
Q 041569          144 SEFPLNDRELHHLIS---KCPLLEDLSISHC  171 (285)
Q Consensus       144 ~~~~~~~~~l~~l~~---~cp~Le~L~l~~c  171 (285)
                      .++.+++.+...+..   .-..|++|++.++
T Consensus       106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            888887776655543   4566888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	285
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	4e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	4e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 6  DQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQF 41
          D IS LP  +  +++++L  K++ + +     W   
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 6  DQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQNSFPIL 48
          D I+ LP  I   I  YL  +++  +  +S +WN+       L
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 6/132 (4%)

Query: 118 LTSLKLVGCKLELP---SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSL 174
           + + +     ++ P    F+   ++ + LS   +    LH ++S+C  L++LS+      
Sbjct: 25  VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 84

Query: 175 GRIMIS---SNKLEHLLISSCYGLNALDVDAPRLLSFIFDLNPIPIISTNALCPWNVTLD 231
             I+ +   ++ L  L +S C G +   +          D   +            V + 
Sbjct: 85  DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 144

Query: 232 CDSNLDCDWFLS 243
             S       LS
Sbjct: 145 HVSETITQLNLS 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.38
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.09
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.83
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.81
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.6
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.55
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.49
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.48
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.37
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.32
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.23
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.08
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.96
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.94
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.77
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.57
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.53
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.48
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.42
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.19
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.17
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.02
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.0
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.74
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.44
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.4
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.17
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.07
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.84
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.66
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.24
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.08

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.2e-15  Score=123.27  Aligned_cols=183  Identities=19%  Similarity=0.189  Sum_probs=114.1

Q ss_pred             CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeee-ecChHHHHHHHhCCCccc
Q 041569           90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEF-PLNDRELHHLISKCPLLE  164 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le  164 (285)
                      ++++++++.  +......+...+..|++|++|++++|.+..    ....+++|++|++++| .+++.++..++..||+|+
T Consensus        47 ~L~~LdLs~--~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          47 RVQHMDLSN--SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CCCEEECTT--CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCEEECCC--CccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            466666554  322333344445568888888888887654    2235788888888887 568888888888888888


Q ss_pred             eeeeecCCCcCeEEEc------cCCcceEEEeecC-CC-----ceEEEeCCCccEEEEeeCc-E------eeecCCCccc
Q 041569          165 DLSISHCHSLGRIMIS------SNKLEHLLISSCY-GL-----NALDVDAPRLLSFIFDLNP-I------PIISTNALCP  225 (285)
Q Consensus       165 ~L~l~~c~~~~~~~i~------~~~L~~L~l~~~~-~~-----~~~~~~~p~L~~l~~~~~~-~------~~~~~~~L~~  225 (285)
                      +|++++|..++...+.      +++|++|++.+|. .+     ..+.-.+|+|++|++.++. +      .+...++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            8888888766543221      2688888888764 12     1222357888888887754 2      1234467887


Q ss_pred             ceecc-ccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhheeec
Q 041569          226 WNVTL-DCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLRLW  282 (285)
Q Consensus       226 l~i~~-~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~l~  282 (285)
                      ++++. ..+.   +...    ..++.+|+|+.|++.-. ........+...+++|++.
T Consensus       205 L~L~~C~~i~---~~~l----~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~i~  254 (284)
T d2astb2         205 LSLSRCYDII---PETL----LELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQIN  254 (284)
T ss_dssp             EECTTCTTCC---GGGG----GGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEES
T ss_pred             EECCCCCCCC---hHHH----HHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccccc
Confidence            77764 2221   1111    23567888888887422 2222233344556666653

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.9e-12  Score=72.65  Aligned_cols=35  Identities=20%  Similarity=0.419  Sum_probs=33.1

Q ss_pred             CCCCCHHHHHHHhcCCChhhHHhhhhcccchhhcc
Q 041569            8 ISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQ   42 (285)
Q Consensus         8 ~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~lw   42 (285)
                      ++.||+||+.+||+||+.+|++++++|||+|+++.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.6e-11  Score=102.19  Aligned_cols=146  Identities=16%  Similarity=0.220  Sum_probs=107.2

Q ss_pred             ccCcCCccEEEEcCeeecC-----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEc-----c
Q 041569          112 IFSAKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMIS-----S  181 (285)
Q Consensus       112 ~~~~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~-----~  181 (285)
                      .+...+|++|++++|.+..     ....|++|++|.|.++.+++..+..+ ..+|+|++|++++|..++...+.     .
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH-hcCCCCcCccccccccccccccchhhHHH
Confidence            3455789999999998765     34579999999999999998888774 67999999999999888754322     2


Q ss_pred             CCcceEEEeecCCCce------EEEeCCCccEEEEeeCcEe---------eecCCCcccceeccc-cCCCCChhhHHHHH
Q 041569          182 NKLEHLLISSCYGLNA------LDVDAPRLLSFIFDLNPIP---------IISTNALCPWNVTLD-CDSNLDCDWFLSLK  245 (285)
Q Consensus       182 ~~L~~L~l~~~~~~~~------~~~~~p~L~~l~~~~~~~~---------~~~~~~L~~l~i~~~-~~~~~~~~~~~~l~  245 (285)
                      ++|++|++++|..+..      +...+|+|++|.+.|+...         ....|+|+++++... .++   +..    .
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~it---d~~----~  193 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK---NDC----F  193 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC---GGG----G
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCC---chh----h
Confidence            8999999999974422      1124689999999986411         134578999988652 222   111    1


Q ss_pred             HHhccCCCceEEEEEe-CCCc
Q 041569          246 EFLGASSQIERLCIDF-SSVE  265 (285)
Q Consensus       246 ~~l~~~~~L~~L~L~~-~~~~  265 (285)
                      ..+..+++|++|.|+. ..+.
T Consensus       194 ~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         194 QEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             GGGGGCTTCCEEECTTCTTCC
T ss_pred             hhhcccCcCCEEECCCCCCCC
Confidence            3456799999999965 4444

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=7e-10  Score=77.34  Aligned_cols=38  Identities=21%  Similarity=0.417  Sum_probs=36.4

Q ss_pred             CCCcCCCCCHHHHHHHhcCCChhhHHhhhhcccchhhc
Q 041569            4 TVDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQF   41 (285)
Q Consensus         4 ~~d~~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~l   41 (285)
                      ..|.|+.||+||+.+||+||+++|+++++.|||+|+.+
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999999999999999987

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.81  E-value=1.2e-09  Score=85.67  Aligned_cols=150  Identities=17%  Similarity=0.130  Sum_probs=72.7

Q ss_pred             CCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc-CCcceEEEeec
Q 041569          116 KLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLLISSC  192 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~-~~L~~L~l~~~  192 (285)
                      +++++|.++++.+..  ....+++|++|+++++.+++-.  . +..+|+|+.|++++|....-..+.. ++|+.|.+.++
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN  116 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cCCCEEECCCCCCCCccccccCCCcCcCccccccccCcc--c-ccCCccccccccccccccccccccccccccccccccc
Confidence            445555555544433  1123455555555555442211  1 3345555555555443211111111 45555555544


Q ss_pred             CCCceEEE-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccC
Q 041569          193 YGLNALDV-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETN  267 (285)
Q Consensus       193 ~~~~~~~~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~  267 (285)
                      .....-.+ ..|+|+.+.++++.+.    +...++++.+.+....+...+         -++++++|+.|+++.+.+...
T Consensus       117 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~---------~l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         117 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLK---------PLANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG---------GGTTCTTCCEEECCSSCCCCC
T ss_pred             ccccccccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCc---------cccCCCCCCEEECCCCCCCCC
Confidence            31110011 3456666666655421    223345666666554333321         256789999999988876553


Q ss_pred             CCchhhhhhhhee
Q 041569          268 SEDATLHFLYKLR  280 (285)
Q Consensus       268 ~~~~~f~~L~~L~  280 (285)
                         +.+.+|++||
T Consensus       188 ---~~l~~L~~L~  197 (199)
T d2omxa2         188 ---SVLAKLTNLE  197 (199)
T ss_dssp             ---GGGGGCTTCS
T ss_pred             ---ccccCCCCCC
Confidence               3466777776

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=3.3e-10  Score=78.74  Aligned_cols=38  Identities=29%  Similarity=0.500  Sum_probs=36.0

Q ss_pred             CCcCCCCCHHHHHHHhcCCChhhHHhhhhcccchhhcc
Q 041569            5 VDQISDLPPSIIHHIMTYLSAKEVTRTSILSTSWNQFQ   42 (285)
Q Consensus         5 ~d~~~~LP~~il~~I~s~L~~~~~~~~~~vskrWr~lw   42 (285)
                      .|.++.||+||+.+||+||+++|++++++|||+|+++.
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~   40 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   40 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.60  E-value=1.2e-08  Score=81.26  Aligned_cols=173  Identities=13%  Similarity=0.120  Sum_probs=117.1

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL  166 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  166 (285)
                      .+++++.+..  +..  ..++ .+..+++|+.|++++|.+..  +...+++|+.+.+.++.+++-  .. +..+++|+.+
T Consensus        41 ~~L~~L~l~~--~~i--~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i--~~-l~~l~~L~~l  112 (227)
T d1h6ua2          41 DGITTLSAFG--TGV--TTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SA-IAGLQSIKTL  112 (227)
T ss_dssp             HTCCEEECTT--SCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GG-GTTCTTCCEE
T ss_pred             CCcCEEECCC--CCC--Ccch-hHhcCCCCcEeecCCceeecccccccccccccccccccccccc--cc-cccccccccc
Confidence            4677777765  222  2343 35668999999999998766  446789999999999877431  12 5678999999


Q ss_pred             eeecCCCcCeEEEcc-CCcceEEEeecCCCceEE-EeCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhh
Q 041569          167 SISHCHSLGRIMISS-NKLEHLLISSCYGLNALD-VDAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDW  240 (285)
Q Consensus       167 ~l~~c~~~~~~~i~~-~~L~~L~l~~~~~~~~~~-~~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~  240 (285)
                      .+.+|.......+.. +.++.+.+..+....... ..+++|++|.+.++.+.    +...++|+.++++...+...+   
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~---  189 (227)
T d1h6ua2         113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS---  189 (227)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG---
T ss_pred             ccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCCh---
Confidence            999886433222222 788888887775222222 26788999999887632    345578888888775554432   


Q ss_pred             HHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhheee
Q 041569          241 FLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLRL  281 (285)
Q Consensus       241 ~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~l  281 (285)
                            .++++++|+.|+|+.+.+...+   .+.++++|+.
T Consensus       190 ------~l~~l~~L~~L~Ls~N~lt~i~---~l~~l~~L~~  221 (227)
T d1h6ua2         190 ------PLASLPNLIEVHLKNNQISDVS---PLANTSNLFI  221 (227)
T ss_dssp             ------GGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCE
T ss_pred             ------hhcCCCCCCEEECcCCcCCCCc---ccccCCCCCE
Confidence                  2567899999999888766543   3556666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.58  E-value=1.5e-08  Score=79.87  Aligned_cols=78  Identities=26%  Similarity=0.196  Sum_probs=41.6

Q ss_pred             ccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc-CCcceEE
Q 041569          112 IFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLL  188 (285)
Q Consensus       112 ~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~-~~L~~L~  188 (285)
                      +..+++|++|++++|.+..  ....+++|+.|++.++.+++-  . -+..+|+|+.|++.+|....-..+.. ++++.+.
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~  140 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--S-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY  140 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--G-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred             HhhCCCCCEEeCCCccccCccccccCcccccccccccccccc--c-cccccccccccccccccccccccccccccccccc
Confidence            3446677777777766554  223466677777776666431  1 14456677777776664221111111 4555555


Q ss_pred             Eeec
Q 041569          189 ISSC  192 (285)
Q Consensus       189 l~~~  192 (285)
                      +.++
T Consensus       141 ~~~n  144 (210)
T d1h6ta2         141 LGNN  144 (210)
T ss_dssp             CCSS
T ss_pred             cccc
Confidence            5544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.55  E-value=2.5e-08  Score=77.82  Aligned_cols=151  Identities=15%  Similarity=0.167  Sum_probs=103.7

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL  166 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  166 (285)
                      .+++++.+..  ...  ..+. .+..+++|++|++++|.+..  ...++++|++|.+.++.+..-.   -++.++.|+.|
T Consensus        40 ~~l~~L~l~~--~~i--~~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L  111 (199)
T d2omxa2          40 DQVTTLQADR--LGI--KSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT---PLANLTNLTGL  111 (199)
T ss_dssp             TTCCEEECTT--SCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG---GGTTCTTCSEE
T ss_pred             cCCCEEECCC--CCC--CCcc-ccccCCCcCcCccccccccCcccccCCccccccccccccccccc---ccccccccccc
Confidence            5777777655  221  1222 24457999999999998766  3356899999999998773321   15678999999


Q ss_pred             eeecCCCcCeEEEcc-CCcceEEEeecCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChh
Q 041569          167 SISHCHSLGRIMISS-NKLEHLLISSCYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCD  239 (285)
Q Consensus       167 ~l~~c~~~~~~~i~~-~~L~~L~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~  239 (285)
                      ++.+|.......+.. ++|+.|.++++. +..+. + ..++|+.|.+.++.+.    +...++|++++++...+...+  
T Consensus       112 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~i~--  188 (199)
T d2omxa2         112 TLFNNQITDIDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS--  188 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--
T ss_pred             cccccccccccccchhhhhHHhhhhhhh-hcccccccccccccccccccccccCCccccCCCCCCEEECCCCCCCCCc--
Confidence            999886443222333 889999999884 33333 2 5789999999888632    344578999998876554432  


Q ss_pred             hHHHHHHHhccCCCceEE
Q 041569          240 WFLSLKEFLGASSQIERL  257 (285)
Q Consensus       240 ~~~~l~~~l~~~~~L~~L  257 (285)
                             .++++++||.|
T Consensus       189 -------~l~~L~~L~~L  199 (199)
T d2omxa2         189 -------VLAKLTNLESL  199 (199)
T ss_dssp             -------GGGGCTTCSEE
T ss_pred             -------cccCCCCCCcC
Confidence                   25678888876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.49  E-value=4.9e-08  Score=76.83  Aligned_cols=153  Identities=16%  Similarity=0.158  Sum_probs=100.5

Q ss_pred             cCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-Ecc-CCcceEEEe
Q 041569          115 AKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-ISS-NKLEHLLIS  190 (285)
Q Consensus       115 ~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~-~~L~~L~l~  190 (285)
                      ..+|+.|.+++|.+..  ....+++|++|+|+++.+++-.  . ...+++|+.|++++|. ++.+. +.. ++|+.|.+.
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~--~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECT
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcc--c-cccCcccccccccccc-ccccccccccccccccccc
Confidence            4578889999887765  2346899999999999885421  1 4678999999999875 44322 222 789999998


Q ss_pred             ecCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCC
Q 041569          191 SCYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSV  264 (285)
Q Consensus       191 ~~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~  264 (285)
                      ++. ...+. + ..|+++.+.+.++.+.    ....++|+.++++...+....         -+..+++|++|+++.+.+
T Consensus       121 ~~~-~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~---------~l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         121 HNG-ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV---------PLAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             TSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG---------GGTTCTTCCEEECCSSCC
T ss_pred             ccc-ccccccccccccccccccccccccccccccccccccccccccccccccc---------cccCCCCCCEEECCCCCC
Confidence            885 22222 2 5678888888877632    223457777777664443321         156789999999988877


Q ss_pred             ccCCCchhhhhhhheee
Q 041569          265 ETNSEDATLHFLYKLRL  281 (285)
Q Consensus       265 ~~~~~~~~f~~L~~L~l  281 (285)
                      ...+...-+.+|+.|.+
T Consensus       191 ~~l~~l~~l~~L~~L~L  207 (210)
T d1h6ta2         191 SDLRALAGLKNLDVLEL  207 (210)
T ss_dssp             CBCGGGTTCTTCSEEEE
T ss_pred             CCChhhcCCCCCCEEEc
Confidence            65443222334444443

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=9.4e-09  Score=73.42  Aligned_cols=37  Identities=30%  Similarity=0.614  Sum_probs=34.6

Q ss_pred             CCcCCCCC----HHHHHHHhcCCChhhHHhhhhcccchhhc
Q 041569            5 VDQISDLP----PSIIHHIMTYLSAKEVTRTSILSTSWNQF   41 (285)
Q Consensus         5 ~d~~~~LP----~~il~~I~s~L~~~~~~~~~~vskrWr~l   41 (285)
                      .|.++.||    |||+.+||+||+++|++++++|||+|+.+
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            58899999    59999999999999999999999999886

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.37  E-value=1.1e-07  Score=75.64  Aligned_cols=151  Identities=20%  Similarity=0.181  Sum_probs=102.7

Q ss_pred             CcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-Ecc-CCcceEEE
Q 041569          114 SAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-ISS-NKLEHLLI  189 (285)
Q Consensus       114 ~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~-~~L~~L~l  189 (285)
                      ...+|+.|.+.+|.+..  ....+++|++|++.++.+++-.  . +..+++|+.|.+.+|. ++.+. +.. ++|+.+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~-~~~i~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEEC
T ss_pred             HcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc--c-cccccccccccccccc-cccccccccccccccccc
Confidence            35789999999998766  3346999999999999884321  1 6789999999999885 33222 222 78999999


Q ss_pred             eecCCCceEEE-eCCCccEEEEeeCcE----eeecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCC
Q 041569          190 SSCYGLNALDV-DAPRLLSFIFDLNPI----PIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSV  264 (285)
Q Consensus       190 ~~~~~~~~~~~-~~p~L~~l~~~~~~~----~~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~  264 (285)
                      ..|.......+ ..+.++.+.+.+..+    .+...++++++.+....+....         -++++++|+.|+++.+.+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---------~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT---------PLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG---------GGTTCTTCCEEECCSSCC
T ss_pred             ccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch---------hhcccccceecccCCCcc
Confidence            88862221112 467788888777652    2445567888888764443221         256789999999988776


Q ss_pred             ccCCCchhhhhhhhee
Q 041569          265 ETNSEDATLHFLYKLR  280 (285)
Q Consensus       265 ~~~~~~~~f~~L~~L~  280 (285)
                      ...+.   |.++++|+
T Consensus       186 ~~l~~---l~~l~~L~  198 (227)
T d1h6ua2         186 SDISP---LASLPNLI  198 (227)
T ss_dssp             CCCGG---GGGCTTCC
T ss_pred             CCChh---hcCCCCCC
Confidence            65432   44444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.2e-07  Score=77.33  Aligned_cols=52  Identities=25%  Similarity=0.227  Sum_probs=22.4

Q ss_pred             CccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569          117 LLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC  171 (285)
Q Consensus       117 ~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  171 (285)
                      +++.|+|+++.+..    ...++++|++|+|.++.++.-.   ....+++|+.|+++++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~---~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ---VDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE---CCSCCTTCCEEECCSS
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccccc---cccccccccccccccc
Confidence            45555555554432    1123455555555554442110   0123455555555544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.23  E-value=3.4e-07  Score=77.93  Aligned_cols=150  Identities=17%  Similarity=0.175  Sum_probs=85.4

Q ss_pred             cCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc-CCcceEEEee
Q 041569          115 AKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS-NKLEHLLISS  191 (285)
Q Consensus       115 ~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~-~~L~~L~l~~  191 (285)
                      +++|+.|++++|.+..  ....+++|+.|.+.++.+++-.   -+..+++|++|+++++.-.....+.. +.++.+.+..
T Consensus       218 ~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~  294 (384)
T d2omza2         218 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE  294 (384)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             cCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCC---cccccccCCEeeccCcccCCCCccccccccccccccc
Confidence            4566666666665544  2234666777777766653211   14456777777776553111111111 5556666655


Q ss_pred             cCCCceEE--EeCCCccEEEEeeCcE----eeecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          192 CYGLNALD--VDAPRLLSFIFDLNPI----PIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       192 ~~~~~~~~--~~~p~L~~l~~~~~~~----~~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      +. +..+.  ...++++.++++++.+    ++...|+|+.++++...+...+         .++.+++|+.|+++.+.+.
T Consensus       295 n~-l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~---------~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         295 NQ-LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS---------SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             SC-CSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG---------GGGGCTTCCEEECCSSCCC
T ss_pred             cc-cccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCCh---------hHcCCCCCCEEECCCCcCC
Confidence            53 22221  1457788888877763    2345568888888765554332         2567899999999888776


Q ss_pred             cCCCchhhhhhhhee
Q 041569          266 TNSEDATLHFLYKLR  280 (285)
Q Consensus       266 ~~~~~~~f~~L~~L~  280 (285)
                      ..+   .+.+|++|+
T Consensus       365 ~l~---~l~~l~~L~  376 (384)
T d2omza2         365 DLT---PLANLTRIT  376 (384)
T ss_dssp             BCG---GGTTCTTCS
T ss_pred             CCh---hhccCCCCC
Confidence            532   244455544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1e-06  Score=71.48  Aligned_cols=97  Identities=19%  Similarity=0.113  Sum_probs=64.4

Q ss_pred             CCccEEEEcCeeecCCCccc-cccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEcc--CCcceEEEeec
Q 041569          116 KLLTSLKLVGCKLELPSFTC-AHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISS--NKLEHLLISSC  192 (285)
Q Consensus       116 ~~L~~L~L~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~--~~L~~L~l~~~  192 (285)
                      .++.+++-++..+...+.++ +++++|+|+++.++.-.- ..+..+++|++|+++++. ++.+....  ++|+.|+++++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSS
T ss_pred             CCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCH-HHhhcccccccccccccc-ccccccccccccccccccccc
Confidence            44555566665555433344 589999999997743211 125678999999999984 66655433  89999999998


Q ss_pred             C--CCceEEEeCCCccEEEEeeCc
Q 041569          193 Y--GLNALDVDAPRLLSFIFDLNP  214 (285)
Q Consensus       193 ~--~~~~~~~~~p~L~~l~~~~~~  214 (285)
                      .  .........|+|+.|++.+..
T Consensus        88 ~l~~~~~~~~~l~~L~~L~l~~~~  111 (266)
T d1p9ag_          88 QLQSLPLLGQTLPALTVLDVSFNR  111 (266)
T ss_dssp             CCSSCCCCTTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccc
Confidence            5  111111246788888887765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.08  E-value=1.1e-08  Score=79.85  Aligned_cols=105  Identities=21%  Similarity=0.224  Sum_probs=67.0

Q ss_pred             ccCCccccCcCCccEEEEcCeeecC-C-CccccccceEEeeeeecCh-HHHHHHHhCCCccceeeeecCCCcCeEE-Ecc
Q 041569          106 YALPQTIFSAKLLTSLKLVGCKLEL-P-SFTCAHLKKLLLSEFPLND-RELHHLISKCPLLEDLSISHCHSLGRIM-ISS  181 (285)
Q Consensus       106 ~~l~~~~~~~~~L~~L~L~~~~~~~-~-~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~  181 (285)
                      ..++..+...++|+.|+|+++.+.. . ...+++|++|+|+++.+++ ..+   ...+++|+.|++.++. ++.+. +..
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~---~~~~~~L~~L~l~~N~-i~~l~~~~~  113 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL---DAVADTLEELWISYNQ-IASLSGIEK  113 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSH---HHHHHHCCEEECSEEE-CCCHHHHHH
T ss_pred             hhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccccccc---cccccccccccccccc-ccccccccc
Confidence            3444556667888888888887765 2 2357888888888887743 222   2335678888888773 44321 111


Q ss_pred             -CCcceEEEeecC--CCceEE-E-eCCCccEEEEeeCc
Q 041569          182 -NKLEHLLISSCY--GLNALD-V-DAPRLLSFIFDLNP  214 (285)
Q Consensus       182 -~~L~~L~l~~~~--~~~~~~-~-~~p~L~~l~~~~~~  214 (285)
                       ++|+.|++.++.  .+..+. + ..|+|+.|.+.|++
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCc
Confidence             678888887764  122221 2 46888888888875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4.8e-06  Score=66.17  Aligned_cols=179  Identities=15%  Similarity=0.105  Sum_probs=91.9

Q ss_pred             CCCceEEEEeeeCCCccccCCccc-cCcCCccEEEEcCeeecC-----CCccccccceEEeeee-ecChHHHHHHHhCCC
Q 041569           89 NGLEVLDFMVIADENTYYALPQTI-FSAKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEF-PLNDRELHHLISKCP  161 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp  161 (285)
                      ++++.++++.  ..  -..+|... ..+++|+.|+++++.+..     ....+++++++.+..+ .+.... ...+..++
T Consensus        29 ~~l~~L~Ls~--n~--i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~-~~~~~~l~  103 (242)
T d1xwdc1          29 RNAIELRFVL--TK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLP  103 (242)
T ss_dssp             SCCSEEEEES--CC--CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEEC-TTSEECCT
T ss_pred             CCCCEEECcC--Cc--CCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccc-cccccccc
Confidence            4677777665  21  22344433 346777777777765432     1234667777766554 221111 11245677


Q ss_pred             ccceeeeecCCCcCeEEEcc--CCcceEEEeecC--CCceEEEe-----CCCccEEEEeeCcEeeecC-----CCcccce
Q 041569          162 LLEDLSISHCHSLGRIMISS--NKLEHLLISSCY--GLNALDVD-----APRLLSFIFDLNPIPIIST-----NALCPWN  227 (285)
Q Consensus       162 ~Le~L~l~~c~~~~~~~i~~--~~L~~L~l~~~~--~~~~~~~~-----~p~L~~l~~~~~~~~~~~~-----~~L~~l~  227 (285)
                      +|++|++.++. ++......  .+++.+......  .+..+...     .+.++.+.+.++.+.....     +.+..+.
T Consensus       104 ~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~  182 (242)
T d1xwdc1         104 NLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELN  182 (242)
T ss_dssp             TCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEE
T ss_pred             cccccccchhh-hcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccc
Confidence            77777777763 32221111  345555443333  23333211     2356666666655322111     2222222


Q ss_pred             e-ccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhheee
Q 041569          228 V-TLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLRL  281 (285)
Q Consensus       228 i-~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~l  281 (285)
                      . ....+...+.       ..+.++++|+.|+|..+.+...+.. .|.++++|+.
T Consensus       183 ~l~~n~l~~l~~-------~~f~~l~~L~~L~Ls~N~l~~l~~~-~~~~l~~L~~  229 (242)
T d1xwdc1         183 LSDNNNLEELPN-------DVFHGASGPVILDISRTRIHSLPSY-GLENLKKLRA  229 (242)
T ss_dssp             CTTCTTCCCCCT-------TTTTTSCCCSEEECTTSCCCCCCSS-SCTTCCEEES
T ss_pred             cccccccccccH-------HHhcCCCCCCEEECCCCcCCccCHH-HHcCCccccc
Confidence            1 1123333333       3467789999999988877765544 3777777764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.2e-06  Score=64.23  Aligned_cols=98  Identities=19%  Similarity=0.189  Sum_probs=62.6

Q ss_pred             cCcCCccEEEEcCeeecC---CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEE---c-cCCcc
Q 041569          113 FSAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMI---S-SNKLE  185 (285)
Q Consensus       113 ~~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i---~-~~~L~  185 (285)
                      ..+.++++|+|++|.+..   ....+++|+.|+|+++.++.-  .. ++.+|+|+.|++++|. ++.+..   . .++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~-~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DG-FPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CC-CCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CC-cccCcchhhhhccccc-ccCCCccccccccccc
Confidence            356789999999998765   234578899999999877431  11 5678889999998885 443321   1 16777


Q ss_pred             eEEEeecC--CCceEE-E-eCCCccEEEEeeCc
Q 041569          186 HLLISSCY--GLNALD-V-DAPRLLSFIFDLNP  214 (285)
Q Consensus       186 ~L~l~~~~--~~~~~~-~-~~p~L~~l~~~~~~  214 (285)
                      .|.+.++.  .+..+. + ..|+|+++++.+++
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             cceeccccccccccccccccccccchhhcCCCc
Confidence            77777764  221111 1 34556666555553

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.94  E-value=3.9e-06  Score=71.07  Aligned_cols=152  Identities=18%  Similarity=0.224  Sum_probs=100.0

Q ss_pred             ccCcCCccEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeE-EEcc-CCcceE
Q 041569          112 IFSAKLLTSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRI-MISS-NKLEHL  187 (285)
Q Consensus       112 ~~~~~~L~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~-~i~~-~~L~~L  187 (285)
                      ...+++++.+.++++.+..  +...+++|++|++.++.+++-.   .+..+++|+.|++.+|. ++.+ .+.. ++|+.|
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L  268 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTEL  268 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEE
T ss_pred             cccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc---hhhcccccchhccccCc-cCCCCcccccccCCEe
Confidence            3446788888888887665  3345788999999988774421   25678999999999875 3322 2222 789999


Q ss_pred             EEeecCCCceEE-E-eCCCccEEEEeeCcEe----eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEe
Q 041569          188 LISSCYGLNALD-V-DAPRLLSFIFDLNPIP----IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDF  261 (285)
Q Consensus       188 ~l~~~~~~~~~~-~-~~p~L~~l~~~~~~~~----~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  261 (285)
                      ++.++. +..+. + ..+.++.+...++.+.    ....+++++++++...+....         -+..+|+|++|+++.
T Consensus       269 ~l~~~~-l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~---------~l~~l~~L~~L~L~~  338 (384)
T d2omza2         269 KLGANQ-ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS---------PVSSLTKLQRLFFAN  338 (384)
T ss_dssp             ECCSSC-CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG---------GGGGCTTCCEEECCS
T ss_pred             eccCcc-cCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc---------ccccCCCCCEEECCC
Confidence            988775 22221 1 4567777777766532    334457777777765544332         156799999999998


Q ss_pred             CCCccCCCchhhhhhhhee
Q 041569          262 SSVETNSEDATLHFLYKLR  280 (285)
Q Consensus       262 ~~~~~~~~~~~f~~L~~L~  280 (285)
                      +.+...+   .|.++++|+
T Consensus       339 n~l~~l~---~l~~l~~L~  354 (384)
T d2omza2         339 NKVSDVS---SLANLTNIN  354 (384)
T ss_dssp             SCCCCCG---GGGGCTTCC
T ss_pred             CCCCCCh---hHcCCCCCC
Confidence            8776543   245555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.3e-06  Score=65.50  Aligned_cols=76  Identities=14%  Similarity=0.239  Sum_probs=32.2

Q ss_pred             ccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-Ecc-CCcceEEEeecCCCceEE----EeCCCccEE
Q 041569          135 CAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-ISS-NKLEHLLISSCYGLNALD----VDAPRLLSF  208 (285)
Q Consensus       135 ~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~-~~L~~L~l~~~~~~~~~~----~~~p~L~~l  208 (285)
                      ...|++|+|.++.++.-  ..+...+++|+.|+++++. ++.+. +.. ++|+.|++++|. +..+.    ...|+|+.|
T Consensus        17 ~~~lr~L~L~~n~I~~i--~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             TTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEE
T ss_pred             cCcCcEEECCCCCCCcc--CccccccccCCEEECCCCC-CCccCCcccCcchhhhhccccc-ccCCCccccccccccccc
Confidence            34455555555544211  1123344555555555542 22221 111 455555555552 33332    124555555


Q ss_pred             EEeeCc
Q 041569          209 IFDLNP  214 (285)
Q Consensus       209 ~~~~~~  214 (285)
                      .+.++.
T Consensus        93 ~L~~N~   98 (162)
T d1a9na_          93 ILTNNS   98 (162)
T ss_dssp             ECCSCC
T ss_pred             eecccc
Confidence            555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.7e-06  Score=70.72  Aligned_cols=177  Identities=16%  Similarity=0.118  Sum_probs=96.4

Q ss_pred             CCCceEEEEeeeCCCccccCCcc-ccCcCCccEEEEcCeeecC----CCccccccceEEeeeee-cChHHHHHHHhCCCc
Q 041569           89 NGLEVLDFMVIADENTYYALPQT-IFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFP-LNDRELHHLISKCPL  162 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~  162 (285)
                      .+++.|+++.  ..  -..+|.. +..+++|+.|+++++.+..    ....++.++.+...... ++.-. ...+..+++
T Consensus        32 ~~~~~L~Ls~--N~--i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~~l~~  106 (284)
T d1ozna_          32 AASQRIFLHG--NR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGR  106 (284)
T ss_dssp             TTCSEEECTT--SC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTT
T ss_pred             CCCCEEECcC--Cc--CCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccccc-chhhccccc
Confidence            3455555543  11  1233332 3345667777776665443    22234555555544331 11100 112456788


Q ss_pred             cceeeeecCCCcCeEEE---c-cCCcceEEEeecCCCceEE---E-eCCCccEEEEeeCcEeee------cCCCccccee
Q 041569          163 LEDLSISHCHSLGRIMI---S-SNKLEHLLISSCYGLNALD---V-DAPRLLSFIFDLNPIPII------STNALCPWNV  228 (285)
Q Consensus       163 Le~L~l~~c~~~~~~~i---~-~~~L~~L~l~~~~~~~~~~---~-~~p~L~~l~~~~~~~~~~------~~~~L~~l~i  228 (285)
                      |++|+++++.. ..+..   . .++|+.+.+.++. +..+.   + ..++|+.|++.++.+...      ..++|+.+.+
T Consensus       107 L~~L~l~~n~~-~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         107 LHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             CCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEecCCccc-ccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence            88888887752 21111   1 1678888887763 33332   2 357888888888764321      2245666666


Q ss_pred             ccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569          229 TLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR  280 (285)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~  280 (285)
                      ....+.....       ..+..+++|+.|+++.+.....+.. .|..+.+|+
T Consensus       185 ~~N~l~~i~~-------~~f~~l~~L~~L~l~~N~i~~~~~~-~~~~~~~L~  228 (284)
T d1ozna_         185 HQNRVAHVHP-------HAFRDLGRLMTLYLFANNLSALPTE-ALAPLRALQ  228 (284)
T ss_dssp             CSSCCCEECT-------TTTTTCTTCCEEECCSSCCSCCCHH-HHTTCTTCC
T ss_pred             hhccccccCh-------hHhhhhhhccccccccccccccccc-ccccccccC
Confidence            6544443332       3456788999999988888764432 355555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.86  E-value=1.1e-05  Score=66.46  Aligned_cols=56  Identities=20%  Similarity=0.175  Sum_probs=28.8

Q ss_pred             CCCceEEEEeeeCCCccccC-CccccCcCCccEEEEcCeeecC-CCccccccceEEeeeeec
Q 041569           89 NGLEVLDFMVIADENTYYAL-PQTIFSAKLLTSLKLVGCKLEL-PSFTCAHLKKLLLSEFPL  148 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~L~~L~L~~~~~  148 (285)
                      .+++++++...    ....+ |..+..+++|+.|+++++.+.. +...++.++.|.+..+.+
T Consensus        55 ~~L~~L~l~~n----~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l  112 (305)
T d1xkua_          55 KNLHTLILINN----KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI  112 (305)
T ss_dssp             TTCCEEECCSS----CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCC
T ss_pred             ccccccccccc----cccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccch
Confidence            35666655541    12223 2333446777777777776544 233345555555555433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.85  E-value=3.4e-06  Score=69.89  Aligned_cols=180  Identities=17%  Similarity=0.063  Sum_probs=94.6

Q ss_pred             CCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE  164 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  164 (285)
                      ..++.++++.  +..-.-.+|..+..+++|++|+|++|.+..    ....++.|+.+.+..+.+... +...+..++.|+
T Consensus        76 ~~L~~L~Ls~--~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~  152 (313)
T d1ogqa_          76 PYLNFLYIGG--INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLV  152 (313)
T ss_dssp             TTCSEEEEEE--ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCC
T ss_pred             cccccccccc--ccccccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccCcccc
Confidence            4677777764  111122467777777788888887776544    233466777777776644211 111245678888


Q ss_pred             eeeeecCCCcCeEE--Ecc-CC-cceEEEeec-----------------------C---CCceEEEeCCCccEEEEeeCc
Q 041569          165 DLSISHCHSLGRIM--ISS-NK-LEHLLISSC-----------------------Y---GLNALDVDAPRLLSFIFDLNP  214 (285)
Q Consensus       165 ~L~l~~c~~~~~~~--i~~-~~-L~~L~l~~~-----------------------~---~~~~~~~~~p~L~~l~~~~~~  214 (285)
                      .++++++.....+.  +.. .+ ++.+.+..+                       .   .........++++.+.+.++.
T Consensus       153 ~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            88877664211100  000 11 122322221                       1   000001134566666666655


Q ss_pred             Ee-----eecCCCcccceeccccCC-CCChhhHHHHHHHhccCCCceEEEEEeCCCc-cCCCchhhhhhhheeec
Q 041569          215 IP-----IISTNALCPWNVTLDCDS-NLDCDWFLSLKEFLGASSQIERLCIDFSSVE-TNSEDATLHFLYKLRLW  282 (285)
Q Consensus       215 ~~-----~~~~~~L~~l~i~~~~~~-~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~f~~L~~L~l~  282 (285)
                      ..     +...++++.++++...+. ..+        ..++.+++|+.|+|+.+... ..|.   +.+|++|+..
T Consensus       233 l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP--------~~l~~L~~L~~L~Ls~N~l~g~iP~---~~~L~~L~~l  296 (313)
T d1ogqa_         233 LAFDLGKVGLSKNLNGLDLRNNRIYGTLP--------QGLTQLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVS  296 (313)
T ss_dssp             ECCBGGGCCCCTTCCEEECCSSCCEECCC--------GGGGGCTTCCEEECCSSEEEEECCC---STTGGGSCGG
T ss_pred             ccccccccccccccccccCccCeecccCC--------hHHhCCCCCCEEECcCCcccccCCC---cccCCCCCHH
Confidence            32     223346777777654443 222        34567899999999888776 3443   3456666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=3e-06  Score=69.26  Aligned_cols=163  Identities=16%  Similarity=0.129  Sum_probs=106.3

Q ss_pred             CCCceEEEEeeeCCCccccCCccc-cCcCCccEEEEcCe-eecC----CCccccccceEEeeeeecChHHHHHHHhCCCc
Q 041569           89 NGLEVLDFMVIADENTYYALPQTI-FSAKLLTSLKLVGC-KLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPL  162 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~-~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~  162 (285)
                      +.+++++++..  .  ...++... ..+..++.+..... .+..    ...++++|++|++.++.+..-. ......+++
T Consensus        56 ~~L~~L~ls~n--~--l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~  130 (284)
T d1ozna_          56 RNLTILWLHSN--V--LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAA  130 (284)
T ss_dssp             TTCCEEECCSS--C--CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTT
T ss_pred             ccccccccccc--c--ccccccccccccccccccccccccccccccchhhcccccCCEEecCCccccccc-ccccchhcc
Confidence            46788877652  1  12222222 33677888777644 3322    3346889999999998763211 122456889


Q ss_pred             cceeeeecCCCcCeEEE---cc-CCcceEEEeecCCCceEEE----eCCCccEEEEeeCcEe------eecCCCccccee
Q 041569          163 LEDLSISHCHSLGRIMI---SS-NKLEHLLISSCYGLNALDV----DAPRLLSFIFDLNPIP------IISTNALCPWNV  228 (285)
Q Consensus       163 Le~L~l~~c~~~~~~~i---~~-~~L~~L~l~~~~~~~~~~~----~~p~L~~l~~~~~~~~------~~~~~~L~~l~i  228 (285)
                      |+.+++.++. ++.+.-   .. ++|++|++.++ .+..+..    ..++|+.+.+.++.+.      +...++++++++
T Consensus       131 L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         131 LQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cchhhhcccc-ccccChhHhccccchhhcccccC-cccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccc
Confidence            9999999864 443321   12 78999999998 4555532    4688999998887632      223357888888


Q ss_pred             ccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          229 TLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      +...+...+.       ..++.+++|+.|+++-+...
T Consensus       209 ~~N~i~~~~~-------~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         209 FANNLSALPT-------EALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CSSCCSCCCH-------HHHTTCTTCCEEECCSSCEE
T ss_pred             cccccccccc-------cccccccccCEEEecCCCCC
Confidence            8766665554       45678999999999877665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=1e-05  Score=57.57  Aligned_cols=57  Identities=23%  Similarity=0.276  Sum_probs=27.6

Q ss_pred             ccCcCCccEEEEcCeeecC-C--CccccccceEEeeeeecChHHHHHHHhCCCccceeeeecC
Q 041569          112 IFSAKLLTSLKLVGCKLEL-P--SFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHC  171 (285)
Q Consensus       112 ~~~~~~L~~L~L~~~~~~~-~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  171 (285)
                      +..+++|++|+++++.+.. +  ...+++|++|++.++.++.-  .. +..+|+|++|+++++
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l--~~-~~~l~~L~~L~l~~N   75 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--DG-VANLPRLQELLLCNN   75 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSS
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc--Cc-cccccccCeEECCCC
Confidence            3344555555555555443 1  12355555555555554221  11 344555555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.60  E-value=7.7e-06  Score=61.43  Aligned_cols=120  Identities=16%  Similarity=0.219  Sum_probs=68.5

Q ss_pred             cccccceEEeeee-ecChHHHHHH---HhCCCccceeeeecCCCcCeEEE-------c-cCCcceEEEeecCCCceEEEe
Q 041569          134 TCAHLKKLLLSEF-PLNDRELHHL---ISKCPLLEDLSISHCHSLGRIMI-------S-SNKLEHLLISSCYGLNALDVD  201 (285)
Q Consensus       134 ~~~~L~~L~L~~~-~~~~~~l~~l---~~~cp~Le~L~l~~c~~~~~~~i-------~-~~~L~~L~l~~~~~~~~~~~~  201 (285)
                      +.|.|++|+|.++ .++++++..+   +..++.|++|++++|. ++.-.+       . .++|++|++++|. +..-.  
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g--   88 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF-LTPEL--   88 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHH--
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhh-cchHH--
Confidence            4578888888875 4666655444   4567788888888774 221100       1 1445555555442 11000  


Q ss_pred             CCCccEEEEeeCcEeeecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          202 APRLLSFIFDLNPIPIISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       202 ~p~L~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                         ...|     .-.+...++|++++++......++......+...+...++|++|.+++....
T Consensus        89 ---~~~l-----~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~~  144 (167)
T d1pgva_          89 ---LARL-----LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  144 (167)
T ss_dssp             ---HHHH-----HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             ---HHHH-----HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCch
Confidence               0000     0012334567777776544445555555677888888999999998876543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.57  E-value=5.8e-06  Score=58.91  Aligned_cols=93  Identities=23%  Similarity=0.229  Sum_probs=59.8

Q ss_pred             cEEEEcCeeecC--CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE-Ecc-CCcceEEEeecC-
Q 041569          119 TSLKLVGCKLEL--PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM-ISS-NKLEHLLISSCY-  193 (285)
Q Consensus       119 ~~L~L~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-i~~-~~L~~L~l~~~~-  193 (285)
                      +.|+|+++.+..  ....+++|++|+++++.++.  +...+..+++|+.|+++++. ++.+. +.. ++|++|++.++. 
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhccccccccccc-ccccCccccccccCeEECCCCcc
Confidence            468888888776  33568999999999998843  21225679999999999874 33321 222 677777777764 


Q ss_pred             -CCceEE-E-eCCCccEEEEeeCc
Q 041569          194 -GLNALD-V-DAPRLLSFIFDLNP  214 (285)
Q Consensus       194 -~~~~~~-~-~~p~L~~l~~~~~~  214 (285)
                       .+..+. + .+|+|+.+++.|+.
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCc
Confidence             111111 1 34666666666553

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.53  E-value=4e-05  Score=63.15  Aligned_cols=102  Identities=19%  Similarity=0.188  Sum_probs=70.7

Q ss_pred             CCceEEEEeeeCCCccccCCccccCcCCccEEEEcCe-eecC----CCccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569           90 GLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGC-KLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLE  164 (285)
Q Consensus        90 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  164 (285)
                      +|.++++... .......+|..+...++|++|+|++| .+..    ....+++|++|+|+++.+.... ......++.|+
T Consensus        51 ~v~~L~L~~~-~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~-~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTCC
T ss_pred             EEEEEECCCC-CCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccc-cccccchhhhc
Confidence            5777777763 12234578999999999999999974 5542    2346899999999999773211 12255689999


Q ss_pred             eeeeecCCCcCeE--EEcc-CCcceEEEeecC
Q 041569          165 DLSISHCHSLGRI--MISS-NKLEHLLISSCY  193 (285)
Q Consensus       165 ~L~l~~c~~~~~~--~i~~-~~L~~L~l~~~~  193 (285)
                      .+++.++.....+  .+.. ++++.+.+.++.
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             ccccccccccccCchhhccCcccceeeccccc
Confidence            9999987533221  1222 789999988875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.53  E-value=3.4e-06  Score=70.88  Aligned_cols=173  Identities=13%  Similarity=0.094  Sum_probs=108.6

Q ss_pred             CCCceEEEEeee-CCCccccCCccccCcCCccEEEEcCeeecC-----------------CCccccccceEEeeeeecCh
Q 041569           89 NGLEVLDFMVIA-DENTYYALPQTIFSAKLLTSLKLVGCKLEL-----------------PSFTCAHLKKLLLSEFPLND  150 (285)
Q Consensus        89 ~~l~~L~l~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----------------~~~~~~~L~~L~L~~~~~~~  150 (285)
                      +++++++++... .......+...+..+++|+.|++++|.+..                 .....+.|+.+.+.++.+++
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            468888776521 111122344444567899999999887543                 01246788999998888865


Q ss_pred             HHH---HHHHhCCCccceeeeecCCCcCeE--------EEc-cCCcceEEEeecC----CCceEE---EeCCCccEEEEe
Q 041569          151 REL---HHLISKCPLLEDLSISHCHSLGRI--------MIS-SNKLEHLLISSCY----GLNALD---VDAPRLLSFIFD  211 (285)
Q Consensus       151 ~~l---~~l~~~cp~Le~L~l~~c~~~~~~--------~i~-~~~L~~L~l~~~~----~~~~~~---~~~p~L~~l~~~  211 (285)
                      ...   ...+..++.|+.|++++|. ++..        .+. .++|+.|++.++.    ....+.   ..+|+|++|.++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             cccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence            544   4446678999999998885 2211        111 2789999998875    111111   257889999998


Q ss_pred             eCcEee------------ecCCCcccceeccccCCCCChhhHHHHHHHh-ccCCCceEEEEEeCCCc
Q 041569          212 LNPIPI------------ISTNALCPWNVTLDCDSNLDCDWFLSLKEFL-GASSQIERLCIDFSSVE  265 (285)
Q Consensus       212 ~~~~~~------------~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l-~~~~~L~~L~L~~~~~~  265 (285)
                      ++.+.-            ...+.+++++++.+.+   .......+...+ ..+++|+.|+|+.+...
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i---~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI---ELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC---BHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcC---ChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            886321            1235688888876433   233344455555 36889999988665554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.48  E-value=3.3e-05  Score=63.34  Aligned_cols=174  Identities=17%  Similarity=0.188  Sum_probs=94.2

Q ss_pred             CCCceEEEEeeeCCCccccCCcc-ccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQT-IFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      ++++.|+++.  .  .-..++.. +..+++|+.|+++++.+..    ....+++|++|.+.++.++.-.    ...++.+
T Consensus        31 ~~l~~L~Ls~--N--~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~----~~~~~~l  102 (305)
T d1xkua_          31 PDTALLDLQN--N--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTL  102 (305)
T ss_dssp             TTCCEEECCS--S--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC----SSCCTTC
T ss_pred             CCCCEEECcC--C--cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCc----cchhhhh
Confidence            4567666654  2  23345443 3446778888777776554    1235677777777777552111    1224555


Q ss_pred             ceeeeecCCC-------------cCeEEE---------------cc-CCcceEEEeecCCCceEEE-eCCCccEEEEeeC
Q 041569          164 EDLSISHCHS-------------LGRIMI---------------SS-NKLEHLLISSCYGLNALDV-DAPRLLSFIFDLN  213 (285)
Q Consensus       164 e~L~l~~c~~-------------~~~~~i---------------~~-~~L~~L~l~~~~~~~~~~~-~~p~L~~l~~~~~  213 (285)
                      +.|.+.++.-             ...+..               .. ++|+.+.+.++. +..+.. ..++|++|++.++
T Consensus       103 ~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~~~~L~~L~l~~n  181 (305)
T d1xkua_         103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGN  181 (305)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTS
T ss_pred             hhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCcccCCccCEEECCCC
Confidence            5555544310             000000               00 466677776663 222222 3567888887776


Q ss_pred             cEe------eecCCCcccceeccccCCCCChhhHHHHHHHhccCCCceEEEEEeCCCccCCCchhhhhhhhee
Q 041569          214 PIP------IISTNALCPWNVTLDCDSNLDCDWFLSLKEFLGASSQIERLCIDFSSVETNSEDATLHFLYKLR  280 (285)
Q Consensus       214 ~~~------~~~~~~L~~l~i~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~f~~L~~L~  280 (285)
                      ...      +...+.++.++++...+...+.       ..+.++++|+.|+|+-+.+...+.  .|.++++|+
T Consensus       182 ~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~-------~~~~~l~~L~~L~L~~N~L~~lp~--~l~~l~~L~  245 (305)
T d1xkua_         182 KITKVDAASLKGLNNLAKLGLSFNSISAVDN-------GSLANTPHLRELHLNNNKLVKVPG--GLADHKYIQ  245 (305)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECT-------TTGGGSTTCCEEECCSSCCSSCCT--TTTTCSSCC
T ss_pred             cCCCCChhHhhcccccccccccccccccccc-------ccccccccceeeeccccccccccc--ccccccCCC
Confidence            522      1223456666665544444433       345678999999998887766543  244455554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.42  E-value=7e-05  Score=57.17  Aligned_cols=106  Identities=20%  Similarity=0.167  Sum_probs=66.1

Q ss_pred             ccccCCccccCcCCccEEEEcCeeecC-----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEE
Q 041569          104 TYYALPQTIFSAKLLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIM  178 (285)
Q Consensus       104 ~~~~l~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~  178 (285)
                      ....+|..+.  +++++|.|+++.+..     ....+++|++|.|.++.+..-. .......++|+.|+++++. ++.+.
T Consensus        19 ~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~-~~~~~~~~~L~~L~Ls~N~-l~~l~   94 (192)
T d1w8aa_          19 GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENK-IKEIS   94 (192)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCC-CCEEC
T ss_pred             CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc-ccccccccccceeeecccc-ccccC
Confidence            3345565443  578999999987743     2245788999999888663221 1224567889999998874 44432


Q ss_pred             Ecc----CCcceEEEeecCCCceEEE----eCCCccEEEEeeCc
Q 041569          179 ISS----NKLEHLLISSCYGLNALDV----DAPRLLSFIFDLNP  214 (285)
Q Consensus       179 i~~----~~L~~L~l~~~~~~~~~~~----~~p~L~~l~~~~~~  214 (285)
                      -.+    ++|+.|++.++ .+..+..    ..++|+++++.++.
T Consensus        95 ~~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          95 NKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             SSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             HHHHhCCCcccccccCCc-cccccCHHHhcCCcccccccccccc
Confidence            221    67777777776 3444431    34666666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=1.6e-05  Score=68.42  Aligned_cols=55  Identities=15%  Similarity=0.141  Sum_probs=30.1

Q ss_pred             CccEEEEcCeeecC-----CCccccccceEEeeeeecChHHHHHH---HhCCCccceeeeecC
Q 041569          117 LLTSLKLVGCKLEL-----PSFTCAHLKKLLLSEFPLNDRELHHL---ISKCPLLEDLSISHC  171 (285)
Q Consensus       117 ~L~~L~L~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l---~~~cp~Le~L~l~~c  171 (285)
                      +|++|+++++.+.+     ....++++++|+|.+|.++++++..+   +..+|+|++|+++++
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N   65 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN   65 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC
Confidence            45566666555543     12235666666666666655444333   355666666666655

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.17  E-value=3.5e-05  Score=64.45  Aligned_cols=151  Identities=12%  Similarity=0.076  Sum_probs=98.3

Q ss_pred             cccCcCCccEEEEcCeeecC--------CCccccccceEEeeeeecChHHHHHH------------HhCCCccceeeeec
Q 041569          111 TIFSAKLLTSLKLVGCKLEL--------PSFTCAHLKKLLLSEFPLNDRELHHL------------ISKCPLLEDLSISH  170 (285)
Q Consensus       111 ~~~~~~~L~~L~L~~~~~~~--------~~~~~~~L~~L~L~~~~~~~~~l~~l------------~~~cp~Le~L~l~~  170 (285)
                      .+..+++|++|+|++|.+..        .....++|++|.+.++.+++.+...+            ....+.|+.|.+.+
T Consensus        88 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~  167 (344)
T d2ca6a1          88 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  167 (344)
T ss_dssp             HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             HHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccc
Confidence            34457889999999887754        11246889999998887755433222            23578888888887


Q ss_pred             CCCcCeE---E----Ec-cCCcceEEEeecCCCce------E---EEeCCCccEEEEeeCcEe----------eecCCCc
Q 041569          171 CHSLGRI---M----IS-SNKLEHLLISSCYGLNA------L---DVDAPRLLSFIFDLNPIP----------IISTNAL  223 (285)
Q Consensus       171 c~~~~~~---~----i~-~~~L~~L~l~~~~~~~~------~---~~~~p~L~~l~~~~~~~~----------~~~~~~L  223 (285)
                      +. ++..   .    +. .++|+.|++..|. +..      +   ....|+|+.|+++++.+.          +...+.|
T Consensus       168 n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L  245 (344)
T d2ca6a1         168 NR-LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL  245 (344)
T ss_dssp             SC-CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred             cc-ccccccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhcccccccccccccccccccccccccccc
Confidence            63 2211   1    11 2789999999885 211      1   125689999999988631          2455788


Q ss_pred             ccceeccccCCCCChhhHHHHHHHhcc--CCCceEEEEEeCCCcc
Q 041569          224 CPWNVTLDCDSNLDCDWFLSLKEFLGA--SSQIERLCIDFSSVET  266 (285)
Q Consensus       224 ~~l~i~~~~~~~~~~~~~~~l~~~l~~--~~~L~~L~L~~~~~~~  266 (285)
                      ++++++...++   ......+.+.+..  .+.|++|+++.+.+..
T Consensus       246 ~~L~Ls~n~i~---~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         246 RELGLNDCLLS---ARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             CEEECTTCCCC---HHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             hhhhhhcCccC---chhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            88888764443   2233444555554  3679999999888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=4.3e-05  Score=65.63  Aligned_cols=83  Identities=17%  Similarity=0.121  Sum_probs=53.5

Q ss_pred             HCCCceEEEEeeeCCCcc---ccCCccccCcCCccEEEEcCeeecC---------CCccccccceEEeeeeecChHHHH-
Q 041569           88 ENGLEVLDFMVIADENTY---YALPQTIFSAKLLTSLKLVGCKLEL---------PSFTCAHLKKLLLSEFPLNDRELH-  154 (285)
Q Consensus        88 ~~~l~~L~l~~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~---------~~~~~~~L~~L~L~~~~~~~~~l~-  154 (285)
                      .++++.+++..+  ....   ..+...+..+++|++|+|++|.+.+         ......+|++|+|.++.+++.++. 
T Consensus        26 l~~l~~L~L~~~--~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~  103 (460)
T d1z7xw1          26 LQQCQVVRLDDC--GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  103 (460)
T ss_dssp             HTTCSEEEEESS--CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCCCCEEEeCCC--CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccc
Confidence            467888877763  3222   2334445667888888888876643         111235688888888887665543 


Q ss_pred             --HHHhCCCccceeeeecCC
Q 041569          155 --HLISKCPLLEDLSISHCH  172 (285)
Q Consensus       155 --~l~~~cp~Le~L~l~~c~  172 (285)
                        ..+..+++|++|++.++.
T Consensus       104 l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         104 LSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHTTSCTTCCEEECCSSB
T ss_pred             ccchhhcccccccccccccc
Confidence              345568888888888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.00  E-value=0.0002  Score=54.48  Aligned_cols=100  Identities=18%  Similarity=0.108  Sum_probs=66.7

Q ss_pred             CCCceEEEEeeeCCCccccCCcc-ccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCcc
Q 041569           89 NGLEVLDFMVIADENTYYALPQT-IFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLL  163 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  163 (285)
                      .++++|+++.  ..... ..+.. +...++|+.|+|+++.+..    ....+++|++|+|+++.++.-. ...+.+.++|
T Consensus        29 ~~l~~L~Ls~--N~i~~-~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~-~~~F~~l~~L  104 (192)
T d1w8aa_          29 LHTTELLLND--NELGR-ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQL  104 (192)
T ss_dssp             TTCSEEECCS--CCCCS-BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTC
T ss_pred             CCCCEEEeCC--CCCcc-cccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccC-HHHHhCCCcc
Confidence            3677877765  22211 23333 3457899999999987654    3346889999999999763211 1125678999


Q ss_pred             ceeeeecCCCcCeEEEcc----CCcceEEEeecC
Q 041569          164 EDLSISHCHSLGRIMISS----NKLEHLLISSCY  193 (285)
Q Consensus       164 e~L~l~~c~~~~~~~i~~----~~L~~L~l~~~~  193 (285)
                      ++|+++++. ++.+....    ++|++|.+.+.+
T Consensus       105 ~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         105 KTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CEEECCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cccccCCcc-ccccCHHHhcCCcccccccccccc
Confidence            999999875 55443322    789999988764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.80  E-value=0.00013  Score=54.22  Aligned_cols=27  Identities=7%  Similarity=0.219  Sum_probs=20.1

Q ss_pred             hhHHHHHHHhccCCCceEEEEEeCCCc
Q 041569          239 DWFLSLKEFLGASSQIERLCIDFSSVE  265 (285)
Q Consensus       239 ~~~~~l~~~l~~~~~L~~L~L~~~~~~  265 (285)
                      .....+...+..+++|++|+++++...
T Consensus       119 ~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_         119 NVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            344566677888999999999876543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.74  E-value=0.0011  Score=54.43  Aligned_cols=113  Identities=23%  Similarity=0.179  Sum_probs=71.8

Q ss_pred             HHCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecCCCccccccceEEeeeeecChHHHHHHHhCCCcccee
Q 041569           87 TENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLELPSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDL  166 (285)
Q Consensus        87 ~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  166 (285)
                      ...++++|+++.  .  ....+|..   .++|++|+|+++.+...+..+.+|++|.+.++.++.  +.   .-.+.|++|
T Consensus        36 ~~~~l~~LdLs~--~--~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~~--l~---~lp~~L~~L  103 (353)
T d1jl5a_          36 LDRQAHELELNN--L--GLSSLPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA--LS---DLPPLLEYL  103 (353)
T ss_dssp             HHHTCSEEECTT--S--CCSCCCSC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC--CC---SCCTTCCEE
T ss_pred             HHcCCCEEEeCC--C--CCCCCCCC---CCCCCEEECCCCCCcccccchhhhhhhhhhhcccch--hh---hhccccccc
Confidence            345788888765  2  23356642   478999999998877644456899999999886632  11   123569999


Q ss_pred             eeecCCCcCeEE-Ecc-CCcceEEEeecCCCceEEEeCCCccEEEEeeC
Q 041569          167 SISHCHSLGRIM-ISS-NKLEHLLISSCYGLNALDVDAPRLLSFIFDLN  213 (285)
Q Consensus       167 ~l~~c~~~~~~~-i~~-~~L~~L~l~~~~~~~~~~~~~p~L~~l~~~~~  213 (285)
                      +++++. ++.+. ... ++|+.|++.++. ........+.+..+.+...
T Consensus       104 ~L~~n~-l~~lp~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~l~~~~~  150 (353)
T d1jl5a_         104 GVSNNQ-LEKLPELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNN  150 (353)
T ss_dssp             ECCSSC-CSSCCCCTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred             cccccc-cccccchhhhccceeecccccc-ccccccccccccchhhccc
Confidence            999875 33332 222 789999988874 2323233455666655443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.44  E-value=0.00044  Score=52.94  Aligned_cols=97  Identities=19%  Similarity=0.157  Sum_probs=68.6

Q ss_pred             HCCCceEEEEeeeCCCccccCCccccCcCCccEEEEcCeeecC-CC--ccccccceEEeeeeecChHHHHHHHhCCCccc
Q 041569           88 ENGLEVLDFMVIADENTYYALPQTIFSAKLLTSLKLVGCKLEL-PS--FTCAHLKKLLLSEFPLNDRELHHLISKCPLLE  164 (285)
Q Consensus        88 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~--~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  164 (285)
                      ..++++|+++..  ..  ..++ .+..+++|+.|+|++|.+.. ..  ..+++|++|++.++.++.  +.. +..+++|+
T Consensus        47 L~~L~~L~Ls~n--~I--~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~--l~~-~~~l~~L~  118 (198)
T d1m9la_          47 LKACKHLALSTN--NI--EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LSG-IEKLVNLR  118 (198)
T ss_dssp             TTTCCEEECSEE--EE--SCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC--HHH-HHHHHHSS
T ss_pred             ccccceeECccc--CC--CCcc-cccCCccccChhhcccccccccccccccccccccccccccccc--ccc-cccccccc
Confidence            468999988763  21  2233 35668999999999998876 22  235789999999998854  222 45679999


Q ss_pred             eeeeecCCCcCeE----EEcc-CCcceEEEeecC
Q 041569          165 DLSISHCHSLGRI----MISS-NKLEHLLISSCY  193 (285)
Q Consensus       165 ~L~l~~c~~~~~~----~i~~-~~L~~L~l~~~~  193 (285)
                      .|+++++. ++.+    .+.. ++|+.|.+.+++
T Consensus       119 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         119 VLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccch-hccccccccccCCCccceeecCCCc
Confidence            99999874 3322    1233 899999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0054  Score=47.65  Aligned_cols=86  Identities=22%  Similarity=0.223  Sum_probs=58.1

Q ss_pred             ccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEc-
Q 041569          106 YALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMIS-  180 (285)
Q Consensus       106 ~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~-  180 (285)
                      ..+|..++  +++++|+++++.+..    ...++++|++|++.++.+....=...+..++.+++|.+..|..+...... 
T Consensus        21 ~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          21 TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             SSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc
Confidence            35555443  479999999987654    22468999999999886532110112456888999988887766554322 


Q ss_pred             ---cCCcceEEEeecC
Q 041569          181 ---SNKLEHLLISSCY  193 (285)
Q Consensus       181 ---~~~L~~L~l~~~~  193 (285)
                         .++|+.+.+.++.
T Consensus        99 ~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTG  114 (242)
T ss_dssp             EECCTTCCEEEEESCC
T ss_pred             ccccccccccccchhh
Confidence               2789999998874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.17  E-value=0.0018  Score=53.08  Aligned_cols=70  Identities=21%  Similarity=0.158  Sum_probs=44.8

Q ss_pred             cccccceEEeeeeecChHHHHHHHhCCCccceeeeecCCCcCeEEEccCCcceEEEeecCCCceEEEeCCCccEEEE
Q 041569          134 TCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCHSLGRIMISSNKLEHLLISSCYGLNALDVDAPRLLSFIF  210 (285)
Q Consensus       134 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~p~L~~l~~  210 (285)
                      .+++|++|+|+++.++.     +-...|+|+.|++++|. ++.+.-..++|++|++++|. ++.+.-..+.|+.|.+
T Consensus       282 ~~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~L~~N~-L~~l~~~~~~L~~L~L~~N~-L~~lp~~~~~L~~L~~  351 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLIE-----LPALPPRLERLIASFNH-LAEVPELPQNLKQLHVEYNP-LREFPDIPESVEDLRM  351 (353)
T ss_dssp             CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEEC
T ss_pred             cCCCCCEEECCCCccCc-----cccccCCCCEEECCCCc-CCccccccCCCCEEECcCCc-CCCCCccccccCeeEC
Confidence            36788888888886632     11346888888888774 54432222678888888885 5554433345666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.07  E-value=0.00063  Score=50.47  Aligned_cols=60  Identities=13%  Similarity=0.086  Sum_probs=34.2

Q ss_pred             ccCcCCccEEEEcCeeecC---CC-----ccccccceEEeeeeecChHHHHHH---HhCCCccceeeeecC
Q 041569          112 IFSAKLLTSLKLVGCKLEL---PS-----FTCAHLKKLLLSEFPLNDRELHHL---ISKCPLLEDLSISHC  171 (285)
Q Consensus       112 ~~~~~~L~~L~L~~~~~~~---~~-----~~~~~L~~L~L~~~~~~~~~l~~l---~~~cp~Le~L~l~~c  171 (285)
                      +..+++|++|+|++|.+.+   ..     ...+.|++|+|+++.+++++...+   +..++.|++|++.++
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            3345667777777666543   11     124566777777766665554433   444566666666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0035  Score=45.66  Aligned_cols=65  Identities=18%  Similarity=0.102  Sum_probs=36.2

Q ss_pred             cCCccccCcCCccEEEEcCee-ecC----CCccccccceEEeeeeecChHHHHHHHhCCCccceeeeecCC
Q 041569          107 ALPQTIFSAKLLTSLKLVGCK-LEL----PSFTCAHLKKLLLSEFPLNDRELHHLISKCPLLEDLSISHCH  172 (285)
Q Consensus       107 ~l~~~~~~~~~L~~L~L~~~~-~~~----~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  172 (285)
                      ..|..+...++|++|.+.++. +..    ...++++|+.|+|.++.++.-. ...+...++|+.|+++++.
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSC
T ss_pred             cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCCC
Confidence            445555556677777776542 332    2234667777777776552211 1124456777777776654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.002  Score=47.07  Aligned_cols=95  Identities=19%  Similarity=0.169  Sum_probs=57.0

Q ss_pred             CcCCccEEEEcCeeecC---CCccccccceEEeeeee-c---ChHHHHHHHhCCCccceeeeecCCCcCeEEEcc----C
Q 041569          114 SAKLLTSLKLVGCKLEL---PSFTCAHLKKLLLSEFP-L---NDRELHHLISKCPLLEDLSISHCHSLGRIMISS----N  182 (285)
Q Consensus       114 ~~~~L~~L~L~~~~~~~---~~~~~~~L~~L~L~~~~-~---~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~i~~----~  182 (285)
                      .|.....++.++..+..   ....+++|++|.+.+.. +   +...    +...++|+.|+++++. ++.+.-.+    +
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~   80 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSG-LRFVAPDAFHFTP   80 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSC-CCEECTTGGGSCS
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchh----hccccccCcceeeccc-cCCcccccccccc
Confidence            44555667777665543   22357888999997653 4   3333    4567899999998874 55443221    6


Q ss_pred             CcceEEEeecCCCceEE---EeCCCccEEEEeeCc
Q 041569          183 KLEHLLISSCYGLNALD---VDAPRLLSFIFDLNP  214 (285)
Q Consensus       183 ~L~~L~l~~~~~~~~~~---~~~p~L~~l~~~~~~  214 (285)
                      +|+.|+++++. ++.+.   +..++|++|++.+++
T Consensus        81 ~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          81 RLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred             cccceeccCCC-CcccChhhhccccccccccCCCc
Confidence            77777777764 22222   123456666666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.25  E-value=0.0067  Score=44.46  Aligned_cols=37  Identities=16%  Similarity=0.157  Sum_probs=15.8

Q ss_pred             ccccceEEeeeeecChHHHH---HHHhCCCccceeeeecC
Q 041569          135 CAHLKKLLLSEFPLNDRELH---HLISKCPLLEDLSISHC  171 (285)
Q Consensus       135 ~~~L~~L~L~~~~~~~~~l~---~l~~~cp~Le~L~l~~c  171 (285)
                      .++|++|+|+++.+++++..   ..+...+.++.|++.+|
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            34444444444444333222   22333444444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.0017  Score=47.83  Aligned_cols=77  Identities=19%  Similarity=0.192  Sum_probs=36.9

Q ss_pred             CCCceEEEEeeeCCCcc-ccCCccccCcCCccEEEEcCeeecC----CCccccccceEEeeeeecC-----h-HHHHHHH
Q 041569           89 NGLEVLDFMVIADENTY-YALPQTIFSAKLLTSLKLVGCKLEL----PSFTCAHLKKLLLSEFPLN-----D-RELHHLI  157 (285)
Q Consensus        89 ~~l~~L~l~~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~L~~L~L~~~~~~-----~-~~l~~l~  157 (285)
                      +.++.++++.  ..... ..++..+..+++|+.|+|+++.+..    .......|++|.+.++.+.     . .....+.
T Consensus        65 ~~L~~L~Ls~--N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          65 PELLSLNLSN--NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             TTCCCCCCCS--SCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             CCCCEeeCCC--ccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            4566655554  22111 1122333345666666666665544    1122345666666665442     1 2234445


Q ss_pred             hCCCccceee
Q 041569          158 SKCPLLEDLS  167 (285)
Q Consensus       158 ~~cp~Le~L~  167 (285)
                      ..+|+|+.|+
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            5566666664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.006  Score=44.62  Aligned_cols=14  Identities=14%  Similarity=0.052  Sum_probs=10.5

Q ss_pred             HHHhccCCCceEEE
Q 041569          245 KEFLGASSQIERLC  258 (285)
Q Consensus       245 ~~~l~~~~~L~~L~  258 (285)
                      ..++..+|+|+.|+
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence            35677889999874