Citrus Sinensis ID: 041575

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNAKQLPDSDADTVIKALCL
cccccccccccccHHHHHHHHHHHHcccEEEEcccccEEEEccHHHHHHHHHHccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccEEHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccccccccccccccccHHHccc
ccccHHHcccccccHHHHHHHHHHcccEEEEEcccEcEEEEccHHHHHHHHHHccHHHcccccHHHHHHHccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccccccEEEEEc
mighlhlfggpepthrilgnmankygpiftmKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGynflatpsspygsywreTRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDcqnsatgkVSVEMKHWLEGTTFDIIIRIIegkrytsqegtdlHEHAASFFTLFGkfvvsdalpflrwldiggnekLMKKTAKEFDIILQQWLDEhkikrgssevegdeDFIYVMLSLLYdnakqlpdsdaDTVIKALCL
mighlhlfggpepTHRILGNMANKYGPIFTMKMGVNRALVVSnseitkecfttndkalasrPRRMAMEILGYNFLATPSSPYGSYWRETRKIATVELLSnhrleklkhvreSEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWldehkikrgssevegdEDFIYVMLSLLYDNakqlpdsdadTVIKALCL
MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNAKQLPDSDADTVIKALCL
*****HLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNAK****************
MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFK***********VEMKHWLEGTTFDIIIRIIEGKRYTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLD*****************IYVMLSLLYD****LPDSDADTVIKALCL
MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNAKQLPDSDADTVIKALCL
MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRG*****GDEDFIYVMLSLLYDNAKQLPDSDADTVIKALCL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQEGTDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVMLSLLYDNAKQLPDSDADTVIKALCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query263 2.2.26 [Sep-21-2011]
Q9SZ46 524 Cytochrome P450 82C4 OS=A yes no 1.0 0.501 0.463 7e-64
O49858 527 Cytochrome P450 82A3 OS=G no no 0.992 0.495 0.463 6e-63
Q43068 544 Cytochrome P450 82A1 (Fra N/A no 0.992 0.479 0.425 4e-61
O49859 525 Cytochrome P450 82A4 OS=G no no 0.992 0.497 0.446 5e-61
O49394 523 Cytochrome P450 82C2 OS=A no no 1.0 0.502 0.425 9e-58
O81972 522 Cytochrome P450 82A2 OS=G no no 0.984 0.496 0.433 1e-56
O49396 512 Cytochrome P450 82C3 OS=A no no 0.954 0.490 0.416 6e-50
Q9LSF8 515 Cytochrome P450 82G1 OS=A no no 0.954 0.487 0.366 2e-39
O65790 500 Cytochrome P450 81F1 OS=A no no 0.931 0.49 0.327 1e-32
P93147 499 Isoflavone 2'-hydroxylase N/A no 0.946 0.498 0.306 2e-31
>sp|Q9SZ46|C82C4_ARATH Cytochrome P450 82C4 OS=Arabidopsis thaliana GN=CYP82C4 PE=2 SV=1 Back     alignment and function desciption
 Score =  243 bits (621), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 128/276 (46%), Positives = 173/276 (62%), Gaps = 13/276 (4%)

Query: 1   MIGHLHLFGGPEPT-HRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALA 59
           +IGHLHL GG E   +R LG MA+ YGP  ++++G N A VVS+ E+ K+CFT NDKALA
Sbjct: 41  IIGHLHLLGGKEQLLYRTLGKMADHYGPAMSLQLGSNEAFVVSSFEVAKDCFTVNDKALA 100

Query: 60  SRPRRMAMEILGYNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIK 119
           SRP   A + +GYNF     +PY ++WRE RKIAT+ELLSN RL+ LKHVR SE+T  +K
Sbjct: 101 SRPMTAAAKHMGYNFAVFGFAPYSAFWREMRKIATIELLSNRRLQMLKHVRVSEITMGVK 160

Query: 120 GLFKD-CQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRY----------TSQEGTDLHE 168
            L+    +N  T  V V++K WLE  T ++I+R++ GKRY           ++E     +
Sbjct: 161 DLYSLWFKNGGTKPVMVDLKSWLEDMTLNMIVRMVAGKRYFGGGGSVSSEDTEEAMQCKK 220

Query: 169 HAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRG-SSE 227
             A FF L G F VSDA P L + D+ G+EK MK+T  E D+IL++W++ H+ +R  S  
Sbjct: 221 AIAKFFHLIGIFTVSDAFPTLSFFDLQGHEKEMKQTGSELDVILERWIENHRQQRKFSGT 280

Query: 228 VEGDEDFIYVMLSLLYDNAKQLPDSDADTVIKALCL 263
            E D DFI VM+SL           DA+T IK+ CL
Sbjct: 281 KENDSDFIDVMMSLAEQGKLSHLQYDANTSIKSTCL 316
Can hydroxylates 8-methoxypsoralen to form 5-hydroxy-8-methoxypsoralen in vivo and in vitro. Involved in the early iron deficiency response, possibly through an IDE1-like mediated pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: -EC: .EC: -
>sp|O49858|C82A3_SOYBN Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=2 SV=1 Back     alignment and function description
>sp|Q43068|C82A1_PEA Cytochrome P450 82A1 (Fragment) OS=Pisum sativum GN=CYP82A1 PE=2 SV=2 Back     alignment and function description
>sp|O49859|C82A4_SOYBN Cytochrome P450 82A4 OS=Glycine max GN=CYP82A4 PE=2 SV=1 Back     alignment and function description
>sp|O49394|C82C2_ARATH Cytochrome P450 82C2 OS=Arabidopsis thaliana GN=CYP82C2 PE=2 SV=2 Back     alignment and function description
>sp|O81972|C82A2_SOYBN Cytochrome P450 82A2 OS=Glycine max GN=CYP82A2 PE=2 SV=1 Back     alignment and function description
>sp|O49396|C82C3_ARATH Cytochrome P450 82C3 OS=Arabidopsis thaliana GN=CYP82C3 PE=2 SV=3 Back     alignment and function description
>sp|Q9LSF8|C82G1_ARATH Cytochrome P450 82G1 OS=Arabidopsis thaliana GN=CYP82G1 PE=1 SV=1 Back     alignment and function description
>sp|O65790|C81F1_ARATH Cytochrome P450 81F1 OS=Arabidopsis thaliana GN=CYP81F1 PE=2 SV=2 Back     alignment and function description
>sp|P93147|C81E1_GLYEC Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query263
255538494 522 cytochrome P450, putative [Ricinus commu 0.996 0.501 0.558 7e-78
224149020324 cytochrome P450 [Populus trichocarpa] gi 0.996 0.808 0.533 1e-75
224112939 528 cytochrome P450 [Populus trichocarpa] gi 0.996 0.496 0.533 2e-75
224149471324 cytochrome P450 [Populus trichocarpa] gi 0.996 0.808 0.518 3e-75
302142408 929 unnamed protein product [Vitis vinifera] 1.0 0.283 0.548 4e-74
225458444 554 PREDICTED: cytochrome P450 82A3-like [Vi 1.0 0.474 0.548 5e-74
255538496 528 cytochrome P450, putative [Ricinus commu 1.0 0.498 0.523 1e-73
255538486 521 cytochrome P450, putative [Ricinus commu 0.996 0.502 0.501 8e-72
359492645 731 PREDICTED: cytochrome P450 82A3 [Vitis v 1.0 0.359 0.516 9e-72
255538492 521 cytochrome P450, putative [Ricinus commu 0.996 0.502 0.505 2e-71
>gi|255538494|ref|XP_002510312.1| cytochrome P450, putative [Ricinus communis] gi|223551013|gb|EEF52499.1| cytochrome P450, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  296 bits (758), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 153/274 (55%), Positives = 194/274 (70%), Gaps = 12/274 (4%)

Query: 1   MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALAS 60
           ++GHL L GGP   H ILGNMA+KYGPIFT+KMGV+++L +S+ E+ KECFT NDK  A+
Sbjct: 41  VLGHLPLLGGPLEPHVILGNMADKYGPIFTIKMGVHQSLTISSWELVKECFTINDKIFAN 100

Query: 61  RPRRMAMEILGYNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKG 120
           RP  +A E++GYN      SPYG YWR+ RKI T+ELLSNHRL+  KHVRESEV A I  
Sbjct: 101 RPNFLAAELMGYNSAMFGFSPYGQYWRQMRKITTLELLSNHRLQTFKHVRESEVRAGIID 160

Query: 121 LFKDCQNSATGK--VSVEMKHWLEGTTFDIIIRIIEGKRY----TSQEGTD---LHEHAA 171
           +++  + S      V V+MK W    T ++I RII GKRY    T+QE  D     E   
Sbjct: 161 IYQLWEKSREDNKGVIVKMKQWFADITLNVIFRIIFGKRYINYTTTQEDGDSDQWREAVR 220

Query: 172 SFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKR--GSSEVE 229
           +FF L GKFVVSDA+PFLRWLD+GG EK MKKTA+E D+++Q WLDEHK KR    + V+
Sbjct: 221 NFFVLSGKFVVSDAVPFLRWLDLGGYEKSMKKTARELDVVVQGWLDEHKRKRLMSGNRVK 280

Query: 230 GDEDFIYVMLSLLYDNAKQLPDSDADTVIKALCL 263
           G+EDF+ VMLS+L D+A++LP  DADT+ KA CL
Sbjct: 281 GEEDFMDVMLSIL-DDAEELPSLDADTINKATCL 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224149020|ref|XP_002336744.1| cytochrome P450 [Populus trichocarpa] gi|222836647|gb|EEE75040.1| cytochrome P450 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224112939|ref|XP_002332682.1| cytochrome P450 [Populus trichocarpa] gi|222838808|gb|EEE77159.1| cytochrome P450 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224149471|ref|XP_002336813.1| cytochrome P450 [Populus trichocarpa] gi|222836945|gb|EEE75338.1| cytochrome P450 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302142408|emb|CBI19611.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225458444|ref|XP_002282014.1| PREDICTED: cytochrome P450 82A3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255538496|ref|XP_002510313.1| cytochrome P450, putative [Ricinus communis] gi|223551014|gb|EEF52500.1| cytochrome P450, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255538486|ref|XP_002510308.1| cytochrome P450, putative [Ricinus communis] gi|223551009|gb|EEF52495.1| cytochrome P450, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359492645|ref|XP_002281995.2| PREDICTED: cytochrome P450 82A3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255538492|ref|XP_002510311.1| cytochrome P450, putative [Ricinus communis] gi|223551012|gb|EEF52498.1| cytochrome P450, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query263
TAIR|locus:2116607 524 CYP82C4 ""cytochrome P450, fam 1.0 0.501 0.471 1e-59
TAIR|locus:2116652 523 CYP82C2 ""cytochrome P450, fam 1.0 0.502 0.425 7e-54
TAIR|locus:2116622 512 CYP82C3 ""cytochrome P450, fam 0.954 0.490 0.416 5.4e-47
TAIR|locus:2090275 515 CYP82G1 "cytochrome P450, fami 0.977 0.499 0.374 3.3e-40
TAIR|locus:2040174 527 CYP82F1 ""cytochrome P450, fam 0.980 0.489 0.351 3.9e-37
TAIR|locus:2158222 507 CYP81G1 ""cytochrome P450, fam 0.958 0.497 0.326 1.2e-33
TAIR|locus:2114965 518 CYP81H1 ""cytochrome P450, fam 0.961 0.488 0.324 5.2e-33
TAIR|locus:2126382 501 CYP81F4 ""cytochrome P450, fam 0.927 0.487 0.338 2.9e-32
TAIR|locus:2126402 500 CYP91A2 ""cytochrome P450, fam 0.939 0.494 0.329 6e-32
TAIR|locus:2115075 492 CYP81D4 ""cytochrome P450, fam 0.939 0.502 0.361 2.6e-31
TAIR|locus:2116607 CYP82C4 ""cytochrome P450, family 82, subfamily C, polypeptide 4"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 130/276 (47%), Positives = 174/276 (63%)

Query:     1 MIGHLHLFGGPEPT-HRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALA 59
             +IGHLHL GG E   +R LG MA+ YGP  ++++G N A VVS+ E+ K+CFT NDKALA
Sbjct:    41 IIGHLHLLGGKEQLLYRTLGKMADHYGPAMSLQLGSNEAFVVSSFEVAKDCFTVNDKALA 100

Query:    60 SRPRRMAMEILGYNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIK 119
             SRP   A + +GYNF     +PY ++WRE RKIAT+ELLSN RL+ LKHVR SE+T  +K
Sbjct:   101 SRPMTAAAKHMGYNFAVFGFAPYSAFWREMRKIATIELLSNRRLQMLKHVRVSEITMGVK 160

Query:   120 GLFKDC-QNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRY------TSQEGTD----LHE 168
              L+    +N  T  V V++K WLE  T ++I+R++ GKRY       S E T+      +
Sbjct:   161 DLYSLWFKNGGTKPVMVDLKSWLEDMTLNMIVRMVAGKRYFGGGGSVSSEDTEEAMQCKK 220

Query:   169 HAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRG-SSE 227
               A FF L G F VSDA P L + D+ G+EK MK+T  E D+IL++W++ H+ +R  S  
Sbjct:   221 AIAKFFHLIGIFTVSDAFPTLSFFDLQGHEKEMKQTGSELDVILERWIENHRQQRKFSGT 280

Query:   228 VEGDEDFIYVMLSLLYDNAKQLPDSDADTVIKALCL 263
              E D DFI VM+SL           DA+T IK+ CL
Sbjct:   281 KENDSDFIDVMMSLAEQGKLSHLQYDANTSIKSTCL 316
GO:0005506 "iron ion binding" evidence=IEA
GO:0009055 "electron carrier activity" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0019825 "oxygen binding" evidence=ISS
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0004497 "monooxygenase activity" evidence=IDA
GO:0071281 "cellular response to iron ion" evidence=IEP
GO:0010043 "response to zinc ion" evidence=RCA
TAIR|locus:2116652 CYP82C2 ""cytochrome P450, family 82, subfamily C, polypeptide 2"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116622 CYP82C3 ""cytochrome P450, family 82, subfamily C, polypeptide 3"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090275 CYP82G1 "cytochrome P450, family 82, subfamily G, polypeptide 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040174 CYP82F1 ""cytochrome P450, family 82, subfamily F, polypeptide 1"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158222 CYP81G1 ""cytochrome P450, family 81, subfamily G, polypeptide 1"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2114965 CYP81H1 ""cytochrome P450, family 81, subfamily H, polypeptide 1"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126382 CYP81F4 ""cytochrome P450, family 81, subfamily F, polypeptide 4"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126402 CYP91A2 ""cytochrome P450, family 91, subfamily A, polypeptide 2"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115075 CYP81D4 ""cytochrome P450, family 81, subfamily D, polypeptide 4"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CYP82C9v1
cytochrome P450 (486 aa)
(Populus trichocarpa)
Predicted Functional Partners:
CYP715A2-2
cytochrome P450 (359 aa)
  •     0.456

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
PLN03112 514 PLN03112, PLN03112, cytochrome P450 family protein 7e-39
PLN02687 517 PLN02687, PLN02687, flavonoid 3'-monooxygenase 8e-30
PLN02183 516 PLN02183, PLN02183, ferulate 5-hydroxylase 4e-28
PLN03234 499 PLN03234, PLN03234, cytochrome P450 83B1; Provisio 1e-26
PLN00110 504 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F 3e-25
PLN02394 503 PLN02394, PLN02394, trans-cinnamate 4-monooxygenas 1e-18
PLN02966 502 PLN02966, PLN02966, cytochrome P450 83A1 9e-18
pfam00067 461 pfam00067, p450, Cytochrome P450 1e-14
PLN02971 543 PLN02971, PLN02971, tryptophan N-hydroxylase 2e-13
PLN03018 534 PLN03018, PLN03018, homomethionine N-hydroxylase 9e-12
PLN02655 466 PLN02655, PLN02655, ent-kaurene oxidase 1e-10
PTZ00404 482 PTZ00404, PTZ00404, cytochrome P450; Provisional 7e-08
PLN00168 519 PLN00168, PLN00168, Cytochrome P450; Provisional 2e-04
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional Back     alignment and domain information 
 Score =  141 bits (357), Expect = 7e-39
 Identities = 85/260 (32%), Positives = 124/260 (47%), Gaps = 17/260 (6%)

Query: 10  GPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEI 69
           GP P HR L ++  KYGP+  +++G   A+   + E+ +E     D   ASRPR +A   
Sbjct: 50  GPLP-HRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTLAAVH 108

Query: 70  LGYNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSA 129
           L Y       +P G +W+  R+I    LL+  RLE     R  E    I+ +++  Q   
Sbjct: 109 LAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAAQ--- 165

Query: 130 TGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQEGTDLHEHAASF-------FTLFGKFVV 182
           TGK  V ++  L   + + + R++ GK+Y   E     E A  F       F L G   +
Sbjct: 166 TGKP-VNLREVLGAFSMNNVTRMLLGKQYFGAESAGPKE-AMEFMHITHELFRLLGVIYL 223

Query: 183 SDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEH-KIKRGSSEVEGDEDFIYVMLSL 241
            D LP  RWLD  G EK M++  K  D    + +DEH + + G      D DF+ V+LSL
Sbjct: 224 GDYLPAWRWLDPYGCEKKMREVEKRVDEFHDKIIDEHRRARSGKLPGGKDMDFVDVLLSL 283

Query: 242 LYDNAKQLPDSDADTVIKAL 261
             +N K+  D   D  IKAL
Sbjct: 284 PGENGKEHMD---DVEIKAL 300

Length = 514
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase Back     alignment and domain information
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase Back     alignment and domain information
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional Back     alignment and domain information
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H); Provisional Back     alignment and domain information
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase Back     alignment and domain information
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1 Back     alignment and domain information
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450 Back     alignment and domain information
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase Back     alignment and domain information
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase Back     alignment and domain information
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase Back     alignment and domain information
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional Back     alignment and domain information
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 263
KOG0156 489 consensus Cytochrome P450 CYP2 subfamily [Secondar 100.0
PLN02687 517 flavonoid 3'-monooxygenase 100.0
PLN00110 504 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional 99.97
PLN02971 543 tryptophan N-hydroxylase 99.97
PLN02655 466 ent-kaurene oxidase 99.97
PLN02183 516 ferulate 5-hydroxylase 99.97
PLN03112 514 cytochrome P450 family protein; Provisional 99.97
PLN03234 499 cytochrome P450 83B1; Provisional 99.97
PLN02966 502 cytochrome P450 83A1 99.96
PLN02290 516 cytokinin trans-hydroxylase 99.96
PLN00168 519 Cytochrome P450; Provisional 99.96
PLN02738 633 carotene beta-ring hydroxylase 99.96
PTZ00404 482 cytochrome P450; Provisional 99.96
PF00067 463 p450: Cytochrome P450 p450 superfamily signature b 99.96
PLN02394 503 trans-cinnamate 4-monooxygenase 99.95
PLN03018 534 homomethionine N-hydroxylase 99.95
KOG0158 499 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subf 99.95
PLN02936 489 epsilon-ring hydroxylase 99.94
KOG0159 519 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 99.93
PLN02500 490 cytochrome P450 90B1 99.93
PLN03141 452 3-epi-6-deoxocathasterone 23-monooxygenase; Provis 99.93
KOG0157 497 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfami 99.93
PLN02196 463 abscisic acid 8'-hydroxylase 99.93
PLN02302 490 ent-kaurenoic acid oxidase 99.93
PLN02169 500 fatty acid (omega-1)-hydroxylase/midchain alkane h 99.92
PLN03195 516 fatty acid omega-hydroxylase; Provisional 99.92
PLN02774 463 brassinosteroid-6-oxidase 99.92
PLN02987 472 Cytochrome P450, family 90, subfamily A 99.9
PLN02426 502 cytochrome P450, family 94, subfamily C protein 99.87
COG2124 411 CypX Cytochrome P450 [Secondary metabolites biosyn 99.73
PLN02648 480 allene oxide synthase 99.72
KOG0684 486 consensus Cytochrome P450 [Secondary metabolites b 99.7
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-35  Score=236.92  Aligned_cols=250  Identities=36%  Similarity=0.618  Sum_probs=209.1

Q ss_pred             CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcc-hhhhhhhhcCcccccc
Q 041575            1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPR-RMAMEILGYNFLATPS   79 (263)
Q Consensus         1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   79 (263)
                      ||||++++.. ..+|..+.+|.++|||++.+++|+.++|||+|+++++|++++++..|++||. ......+..++.++++
T Consensus        36 iIGnl~~l~~-~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~~~~~~~~~i~~  114 (489)
T KOG0156|consen   36 IIGNLHQLGS-LPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLKYLSYGGKGIVF  114 (489)
T ss_pred             ccccHHHcCC-CchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHHHhcCCCCceEe
Confidence            6899999984 2599999999999999999999999999999999999999999999999997 2344667656679999


Q ss_pred             CCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHccccC
Q 041575           80 SPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYT  159 (263)
Q Consensus        80 ~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~  159 (263)
                      +.+|+.||.+||++...+|+...++.......++++.+++.+.+    ...+ .+||+...+..++.+||++++||.++.
T Consensus       115 a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~----~~~~-~~vdl~~~l~~~~~nvI~~~~fG~rf~  189 (489)
T KOG0156|consen  115 APYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSK----SKKG-EPVDLSELLDLLVGNVICRMLFGRRFE  189 (489)
T ss_pred             CCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHh----cCCC-ceeeHHHHHHHHHHHHHHHHHhCCccc
Confidence            98899999999999999999999998888889999999999974    1222 689999999999999999999999998


Q ss_pred             CCcc---hHHHHHHHHHHHhhhccccccccc-cccccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcH
Q 041575          160 SQEG---TDLHEHAASFFTLFGKFVVSDALP-FLRWLD-IGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDF  234 (263)
Q Consensus       160 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~  234 (263)
                      ..+.   .++.+.+....+..+.+.+.+++| ++++++ ..+..+.......++..++++.|++++++. ..  ++++||
T Consensus       190 ~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh~~~~-~~--~~~~D~  266 (489)
T KOG0156|consen  190 EEDEEEFLELKELVEESLELLGSFNLSDYFPFLLRWLDGISGLEKRLKKVSKRLDEFLERIIDEHREKI-GD--EEGRDF  266 (489)
T ss_pred             cCCchHHHHHHHHHHHHHHHhCCccHHHHhhHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cc--CCCCcH
Confidence            7322   447778888888888888888999 677776 335566677777779999999999998876 22  233799


Q ss_pred             HHHHHhccccccccCCCCCchhhhhhhc
Q 041575          235 IYVMLSLLYDNAKQLPDSDADTVIKALC  262 (263)
Q Consensus       235 l~~ll~~~~~~~~~~~~~l~~~~i~~~~  262 (263)
                      +|.||...++++.   +.+++++|++.|
T Consensus       267 vD~lL~~~~~~~~---~~~t~~~i~~~~  291 (489)
T KOG0156|consen  267 VDALLKLMKEEKA---EGLTDDHLKALI  291 (489)
T ss_pred             HHHHHHhhccccc---CCCCHHHHHHHH
Confidence            9999998765421   129999999876

>PLN02687 flavonoid 3'-monooxygenase Back     alignment and domain information
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional Back     alignment and domain information
>PLN02971 tryptophan N-hydroxylase Back     alignment and domain information
>PLN02655 ent-kaurene oxidase Back     alignment and domain information
>PLN02183 ferulate 5-hydroxylase Back     alignment and domain information
>PLN03112 cytochrome P450 family protein; Provisional Back     alignment and domain information
>PLN03234 cytochrome P450 83B1; Provisional Back     alignment and domain information
>PLN02966 cytochrome P450 83A1 Back     alignment and domain information
>PLN02290 cytokinin trans-hydroxylase Back     alignment and domain information
>PLN00168 Cytochrome P450; Provisional Back     alignment and domain information
>PLN02738 carotene beta-ring hydroxylase Back     alignment and domain information
>PTZ00404 cytochrome P450; Provisional Back     alignment and domain information
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry Back     alignment and domain information
>PLN02394 trans-cinnamate 4-monooxygenase Back     alignment and domain information
>PLN03018 homomethionine N-hydroxylase Back     alignment and domain information
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PLN02936 epsilon-ring hydroxylase Back     alignment and domain information
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PLN02500 cytochrome P450 90B1 Back     alignment and domain information
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional Back     alignment and domain information
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism] Back     alignment and domain information
>PLN02196 abscisic acid 8'-hydroxylase Back     alignment and domain information
>PLN02302 ent-kaurenoic acid oxidase Back     alignment and domain information
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase Back     alignment and domain information
>PLN03195 fatty acid omega-hydroxylase; Provisional Back     alignment and domain information
>PLN02774 brassinosteroid-6-oxidase Back     alignment and domain information
>PLN02987 Cytochrome P450, family 90, subfamily A Back     alignment and domain information
>PLN02426 cytochrome P450, family 94, subfamily C protein Back     alignment and domain information
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN02648 allene oxide synthase Back     alignment and domain information
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
3ruk_A 494 Human Cytochrome P450 Cyp17a1 In Complex With Abira 4e-06
3c6g_A 479 Crystal Structure Of Cyp2r1 In Complex With Vitamin 5e-06
3czh_A 481 Crystal Structure Of Cyp2r1 In Complex With Vitamin 6e-06
4i8v_A 491 Human Cytochrome P450 1a1 In Complex With Alpha-nap 7e-05
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone Length = 494 Back     alignment and structure 
Iteration: 1

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/261 (19%), Positives = 100/261 (38%), Gaps = 17/261 (6%)
Query: 1   MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALAS 60
           ++G L         H     +  KYGPI++++MG    ++V + ++ KE      K  + 
Sbjct: 18  LVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSG 77
Query: 61  RPRRMAMEILGYNFLATPSSPYGSYWRETRKIATVELL----SNHRLEKLKHVRESEVTA 116
           RP+   ++I   N      +  G++W+  R++A          + +LEK+       +  
Sbjct: 78  RPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKI-------ICQ 130
Query: 117 SIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQEGTDLHEHAASFFTL 176
            I  L           + +    ++  T    +I      +    E   +  +       
Sbjct: 131 EISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDN 190
Query: 177 FGKFVVSDALPFLRWLDIGGNEKL--MKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDF 234
             K  + D +P   WL I  N+ L  +K   K  + +L + L+ +K K  S  +    D 
Sbjct: 191 LSKDSLVDLVP---WLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDT 247
Query: 235 IYVMLSLLYDNAKQLPDSDAD 255
           + +   +  DN    PD D++
Sbjct: 248 L-MQAKMNSDNGNAGPDQDSE 267
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3 Length = 479 Back     alignment and structure
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2 Length = 481 Back     alignment and structure
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With Alpha-naphthoflavone Length = 491 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
3b98_A 475 Prostaglandin I2 synthase; prostacyclin synthase, 2e-55
3n9y_A 487 Cholesterol SIDE-chain cleavage enzyme; cytochrome 1e-38
3dax_A 491 Cytochrome P450 7A1; cholesterol, cholesterol 7-al 1e-37
3k9v_A 482 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitocho 7e-30
3swz_A 494 Steroid 17-alpha-hydroxylase/17,20 lyase; cytochro 5e-27
3b6h_A 498 Prostacyclin synthase; enzyme-inhibitor complex, C 3e-25
1izo_A 417 P450bsbeta, cytochrome P450 152A1; heme protein, p 2e-23
2hi4_A 495 Cytochrome P450 1A2; CYP1A2, monooxygenase, drug m 4e-23
3qz1_A 496 Steroid 21-hydroxylase; P450 monooxygenase, oxidor 6e-23
3pm0_A 507 Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase 2e-20
3tbg_A 479 Cytochrome P450 2D6; monooxygenase, thioridazine, 6e-18
3czh_A 481 Cytochrome P450 2R1; vitamin D, vitamin S 25-hydro 2e-17
3awm_A 415 Fatty acid alpha-hydroxylase; cytochrome P450, per 5e-17
3s79_A 503 Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD 3e-15
1po5_A 476 Cytochrome P450 2B4; oxidoreductase, membrane prot 4e-15
1r9o_A 477 Cytochrome P450 2C9; monooxygenase, drug metaboliz 4e-15
3e6i_A 476 CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, mono 6e-15
3gw9_A 450 Sterol 14alpha-demethylase; CYP51, cytochrome P450 6e-15
2cib_A 455 Cytochrome P450 51; heme, heme lipid synthesis, me 3e-14
2fdv_A 476 Cytochrome P450 2A6; CYP2A6, monooxygenase, drug m 3e-14
3i3k_A 461 Lanosterol 14-alpha demethylase; cytochrome P450, 3e-13
2ve3_A 444 Putative cytochrome P450 120; oxidoreductase, mono 1e-12
2ij2_A 470 Cytochrome P450 BM3; monoxygenase, heme binding pr 4e-12
3dbg_A 467 Putative cytochrome P450; cytochrome P450 oxidored 6e-12
3mdm_A 456 Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, th 5e-11
1n97_A 389 CYP175A1; electron transport; HET: SRT HEM; 1.80A 6e-05
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A* Length = 475 Back     alignment and structure
 Score =  184 bits (468), Expect = 2e-55
 Identities = 43/264 (16%), Positives = 90/264 (34%), Gaps = 35/264 (13%)

Query: 2   IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASR 61
           +GH   FG  +   + L  M  K+G IFT++       V+        C+      +AS 
Sbjct: 30  LGHALEFG--KDAAKFLTRMKEKHGDIFTVRAAGLYITVLL----DSNCYDAVLSDVASL 83

Query: 62  PRRMAMEILGYNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGL 121
            +    ++L           +     + R            L +L +  ++ +   +   
Sbjct: 84  DQTSYAQVLMKRIFNMILPSHNPESEKKRAEMH---FQGASLTQLSNSMQNNLRLLMT-- 138

Query: 122 FKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQEGTDLHEHA--ASFFTLFGK 179
                     ++ ++   W +   F++   ++    Y +  G + +  A     +  F +
Sbjct: 139 --------PSEMGLKTSEWKKDGLFNLCYSLLFKTGYLTVFGAENNNSAALTQIYEEFRR 190

Query: 180 FVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVML 239
           F     LP L    +   EK +   A+E    L +WL    + R       ++ ++   +
Sbjct: 191 F--DKLLPKLARTTVNKEEKQIASAAREK---LWKWLTPSGLDRK----PREQSWLGSYV 241

Query: 240 SLLYDNAKQLPDSDADTVIKALCL 263
             L D        DA+   +A+ L
Sbjct: 242 KQLQDEGI-----DAEMQRRAMLL 260
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A* Length = 487 Back     alignment and structure
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A* Length = 491 Back     alignment and structure
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A* Length = 482 Back     alignment and structure
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A* Length = 494 Back     alignment and structure
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A* Length = 498 Back     alignment and structure
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A* Length = 417 Back     alignment and structure
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens} Length = 495 Back     alignment and structure
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus} Length = 496 Back     alignment and structure
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens} Length = 507 Back     alignment and structure
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A* Length = 479 Back     alignment and structure
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A* Length = 481 Back     alignment and structure
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A* Length = 415 Back     alignment and structure
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* Length = 503 Back     alignment and structure
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A* Length = 476 Back     alignment and structure
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A* Length = 477 Back     alignment and structure
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A* Length = 476 Back     alignment and structure
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A* Length = 450 Back     alignment and structure
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A* Length = 455 Back     alignment and structure
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A* Length = 476 Back     alignment and structure
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A* Length = 444 Back     alignment and structure
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ... Length = 470 Back     alignment and structure
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A* Length = 467 Back     alignment and structure
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* Length = 456 Back     alignment and structure
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A* Length = 389 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query263
3swz_A 494 Steroid 17-alpha-hydroxylase/17,20 lyase; cytochro 100.0
3pm0_A 507 Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase 99.97
3czh_A 481 Cytochrome P450 2R1; vitamin D, vitamin S 25-hydro 99.97
2fdv_A 476 Cytochrome P450 2A6; CYP2A6, monooxygenase, drug m 99.97
2hi4_A 495 Cytochrome P450 1A2; CYP1A2, monooxygenase, drug m 99.97
3e6i_A 476 CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, mono 99.97
1po5_A 476 Cytochrome P450 2B4; oxidoreductase, membrane prot 99.97
3gw9_A 450 Sterol 14alpha-demethylase; CYP51, cytochrome P450 99.97
3qz1_A 496 Steroid 21-hydroxylase; P450 monooxygenase, oxidor 99.97
1r9o_A 477 Cytochrome P450 2C9; monooxygenase, drug metaboliz 99.97
3ld6_A 461 Lanosterol 14-alpha demethylase; cytochrome P450, 99.97
3k9v_A 482 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitocho 99.96
2ij2_A 470 Cytochrome P450 BM3; monoxygenase, heme binding pr 99.96
3nxu_A 485 Cytochrome P450 3A4; alpha beta protein, cytochrom 99.96
3n9y_A 487 Cholesterol SIDE-chain cleavage enzyme; cytochrome 99.96
3mdm_A 456 Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, th 99.96
3s79_A 503 Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD 99.95
3tbg_A 479 Cytochrome P450 2D6; monooxygenase, thioridazine, 99.95
2cib_A 455 Cytochrome P450 51; heme, heme lipid synthesis, me 99.95
3i3k_A 461 Lanosterol 14-alpha demethylase; cytochrome P450, 99.94
2ve3_A 444 Putative cytochrome P450 120; oxidoreductase, mono 99.94
3dbg_A 467 Putative cytochrome P450; cytochrome P450 oxidored 99.94
1izo_A 417 P450bsbeta, cytochrome P450 152A1; heme protein, p 99.93
3awm_A 415 Fatty acid alpha-hydroxylase; cytochrome P450, per 99.92
2cd8_A 436 Cytochrome P450 monooxygenase; oxidoreductase, PIK 99.91
1n97_A 389 CYP175A1; electron transport; HET: SRT HEM; 1.80A 99.91
3oo3_A 384 OXY protein; cytochrome P450, monooxygenase, PCD-t 99.91
1cpt_A 428 Cytochrome P450-TERP; oxidoreductase(oxygenase); H 99.91
2wm5_A 435 CYP124, putative cytochrome P450 124; metal-bindin 99.9
3v8d_A 491 Cholesterol 7-alpha-monooxygenase; cytochrome, oxi 99.9
3tkt_A 450 Cytochrome P450; aromatic hydrocarbon binding of P 99.9
3ejb_B 404 Biotin biosynthesis cytochrome P450-like enzyme; p 99.9
3a4g_A 411 Vitamin D hydroxylase; cytochrome P450, hemoprotei 99.9
4fb2_A 398 P450CIN; heme, monooxygenase, cindoxin, oxidoreduc 99.89
3tyw_A 417 Putative cytochrome P450; P450 monooxygenase, oxid 99.89
2y5n_A 417 MYCG, P-450-like protein; oxidoreductase, mycinami 99.89
2xkr_A 398 CYP142, putative cytochrome P450 142; oxidoreducta 99.89
1z8o_A 404 6-deoxyerythronolide B hydroxylase; heme, CYP, ery 99.89
1odo_A 408 Putative cytochrome P450 154A1; P450 monooxygenase 99.89
1q5d_A 419 P450 epoxidase; cytochrome P450, epothilone, oxydo 99.89
3aba_A 403 Cytochrome P450; oxidoreductase, heme, monooxygena 99.89
1jfb_A 404 Nitric-oxide reductase cytochrome P450 55A1; cytoc 99.89
2zbx_A 412 Cytochrome P450-SU1; beta prism, heme, iron, metal 99.88
3abb_A 408 CYP105D6, cytochrome P450 hydroxylase; oxidoreduct 99.88
3r9b_A 418 Cytochrome P450 164A2; monooxygenase, oxidoreducta 99.88
2z36_A 413 MOXA, cytochrome P450 type compactin 3'',4''- hydr 99.88
3ivy_A 433 Cytochrome P450 CYP125; cholesterol, monooxygenase 99.88
1ued_A 406 P450 OXYC, P450 monooxygenase; cytochrome P450 van 99.88
2z3t_A 425 Cytochrome P450; monoxygenase, oxydoreductase, hem 99.88
1gwi_A 411 CYP154C1, cytochrome P450 154C1; oxidoreductase, m 99.87
2dkk_A 411 Cytochrome P450; CYP158A1, INHI oxidoreductase; HE 99.87
2uuq_A 414 CYP130, cytochrome P450 130; iron, heme, monooxyge 99.87
2xbk_A 404 PIMD protein; epoxidation, oxidoreductase; HET: HE 99.86
3buj_A 397 CALO2; heme, iron, metal-binding, monooxygenase, o 99.86
1s1f_A 406 Putative cytochrome P450; cytochrome P450 oxidored 99.86
2zwu_A 415 Camphor 5-monooxygenase; P450CAM, camphor-hydroxyl 99.86
3nc3_A 441 Cytochrome P450 CYPX; cytochrome P450 oxidase, HAE 99.86
3lxh_A 421 Cytochrome P450; heme, iron, metal-binding, monoox 99.85
2jjn_A 411 Cytochrome P450 113A1; oxidoreductase, iron, heme, 99.84
3dax_A 491 Cytochrome P450 7A1; cholesterol, cholesterol 7-al 99.84
3oft_A 396 Cytochrome P450, CYP101C1; oxidoreductase; HET: HE 99.84
3mgx_A 415 Putative P450 monooxygenase; cytochrome P450 oxida 99.84
1lfk_A 398 OXYB, P450 monooxygenase; oxidative phenol couplin 99.84
3rwl_A 426 Cytochrome P450 alkane hydroxylase 1 CYP153A7; P45 99.84
2wiy_A 394 XPLA-heme, cytochrome P450-like protein XPLA; CYT- 99.81
1n40_A 396 P450 MT2, cytochrome P450 121; heme binding, oxyge 99.81
3b6h_A 498 Prostacyclin synthase; enzyme-inhibitor complex, C 99.79
3p3o_A 416 Cytochrome P450; monooxygenase, oxidoreductase; HE 99.78
3b4x_A 367 367AA long hypothetical cytochrome P450; HEM prote 99.78
1io7_A 368 Cytochrome P450 CYP119; thermophilic, cytochromo P 99.77
2rfb_A 343 Cytochrome P450; heme, iron, metal-binding, monoox 99.74
3b98_A 475 Prostaglandin I2 synthase; prostacyclin synthase, 99.74
3dan_A 473 Cytochrome P450 74A2; AOS heme cytochrome P450 str 99.71
3dsk_A 495 Cytochrome P450 74A, chloroplast; P450 fold, fatty 99.71
4dxy_A 417 Cytochrome P450, CYP101D2; cytochrome P450 mutant, 99.65
4dnj_A 412 Putative cytochrome P450; oxidoreductase; HET: HEM 99.57
2yjn_B381 Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; 97.91
2krb_A81 Eukaryotic translation initiation factor 3 subunit 89.98
1s79_A103 Lupus LA protein; RRM, alpha/beta, RNA binding pro 89.42
2diu_A96 KIAA0430 protein; structural genomics, RRM domain, 89.03
2nlw_A105 Eukaryotic translation initiation factor 3 subunit 85.77
1iqt_A75 AUF1, heterogeneous nuclear ribonucleoprotein D0; 84.72
2a3j_A127 U1 small nuclear ribonucleoprotein A; computationa 83.4
2mss_A75 Protein (musashi1); RNA-binding domain, RNA bindin 82.47
1nu4_A97 U1A RNA binding domain; RNA recognition motif, U1 81.94
3d2w_A89 TAR DNA-binding protein 43; DP-43 proteinopathy, T 81.76
1whx_A111 Hypothetical protein riken cDNA 1200009A02; RNA re 81.04
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-31  Score=221.01  Aligned_cols=251  Identities=18%  Similarity=0.266  Sum_probs=189.7

Q ss_pred             CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchhhhhhhhcCccccccC
Q 041575            1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRMAMEILGYNFLATPSS   80 (263)
Q Consensus         1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (263)
                      ++||++++.....+|..+.+|+++|||||++++|+.++|+|+||+++++++.++...|.+++.......++.++.+++++
T Consensus        18 liGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~~~~~~~~~gl~~~   97 (494)
T 3swz_A           18 LVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFA   97 (494)
T ss_dssp             EEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHHHHHTTTTCSSSSS
T ss_pred             eEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHHhccCCCCeEeC
Confidence            58999988632468999999999999999999999999999999999999998888998888765555555544577778


Q ss_pred             CCChhHHHHHhHHHhhcCCh--hHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHcccc
Q 041575           81 PYGSYWRETRKIATVELLSN--HRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRY  158 (263)
Q Consensus        81 ~~g~~w~~~Rk~~~~~~f~~--~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~  158 (263)
                      .+|+.|+.+|+++.+ .|+.  ..+..+.+.+.++++.+++.|.+      ..+.++|+...+..+++|+|+.++||.++
T Consensus        98 ~~g~~wr~~Rr~~~~-~f~~~~~~~~~~~~~i~~~~~~l~~~l~~------~~~~~vd~~~~~~~~t~dvi~~~~fG~~~  170 (494)
T 3swz_A           98 DSGAHWQLHRRLAMA-TFALFKDGDQKLEKIICQEISTLCDMLAT------HNGQSIDISFPVFVAVTNVISLICFNTSY  170 (494)
T ss_dssp             CSSHHHHHHHHHHHH-HTTTTSSSTTCHHHHHHHHHHHHHHHHHH------TTTEEECCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHH------cCCCcccHHHHHHHHHHHHHHHHHcCCcC
Confidence            779999999999998 5763  44677889999999999999973      24568999999999999999999999998


Q ss_pred             CCCcc--hHHHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHH
Q 041575          159 TSQEG--TDLHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIY  236 (263)
Q Consensus       159 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l~  236 (263)
                      +..+.  ..+......+........+..++|+++++|. ...+.+....+.+.++++.+++++++....+   ...|+++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~p~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~d~l~  246 (494)
T 3swz_A          171 KNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPN-KTLEKLKSHVKIRNDLLNKILENYKEKFRSD---SITNMLD  246 (494)
T ss_dssp             CTTCTHHHHHHHHHHHHHHHHCSSSSCCSSCGGGTSCC-SHHHHHHHHHHHHHHHHHHHHHHHTTTCCTT---CCCSHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---chhHHHH
Confidence            65221  1222223333333333445677899888873 3345666777788888888888877654332   3479999


Q ss_pred             HHHhccccccc------cCCCCCchhhhhhhc
Q 041575          237 VMLSLLYDNAK------QLPDSDADTVIKALC  262 (263)
Q Consensus       237 ~ll~~~~~~~~------~~~~~l~~~~i~~~~  262 (263)
                      .|+++..+...      ..+..+++++|.+++
T Consensus       247 ~ll~~~~~~~~~~~~~~~~~~~l~~~~i~~~~  278 (494)
T 3swz_A          247 TLMQAKMNSDNGNAGPDQDSELLSDNHILTTI  278 (494)
T ss_dssp             HHHHHHHTSCCC----CCSSGGGCHHHHHHHH
T ss_pred             HHHHHHHhhhcccccccccccccCHHHHHHHH
Confidence            99986532210      123468899887764
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens} Back     alignment and structure
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A* Back     alignment and structure
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A* Back     alignment and structure
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens} Back     alignment and structure
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A* Back     alignment and structure
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A* Back     alignment and structure
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A* Back     alignment and structure
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus} Back     alignment and structure
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A* Back     alignment and structure
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A* Back     alignment and structure
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A* Back     alignment and structure
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ... Back     alignment and structure
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A* Back     alignment and structure
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A* Back     alignment and structure
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A* Back     alignment and structure
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A* Back     alignment and structure
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A* Back     alignment and structure
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A* Back     alignment and structure
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A* Back     alignment and structure
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A* Back     alignment and structure
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A* Back     alignment and structure
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A* Back     alignment and structure
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A* Back     alignment and structure
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A* Back     alignment and structure
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A* Back     alignment and structure
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1 Back     alignment and structure
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A* Back     alignment and structure
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A* Back     alignment and structure
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} Back     alignment and structure
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B* Back     alignment and structure
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A* Back     alignment and structure
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A* Back     alignment and structure
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A* Back     alignment and structure
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A* Back     alignment and structure
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis} Back     alignment and structure
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A* Back     alignment and structure
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1 Back     alignment and structure
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A* Back     alignment and structure
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A* Back     alignment and structure
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A* Back     alignment and structure
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A* Back     alignment and structure
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis} Back     alignment and structure
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A* Back     alignment and structure
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena} Back     alignment and structure
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A* Back     alignment and structure
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1 Back     alignment and structure
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A* Back     alignment and structure
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1 Back     alignment and structure
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A* Back     alignment and structure
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A* Back     alignment and structure
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A* Back     alignment and structure
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora} Back     alignment and structure
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A* Back     alignment and structure
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ... Back     alignment and structure
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A* Back     alignment and structure
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A* Back     alignment and structure
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A* Back     alignment and structure
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A* Back     alignment and structure
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A* Back     alignment and structure
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina} Back     alignment and structure
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A* Back     alignment and structure
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida} Back     alignment and structure
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A* Back     alignment and structure
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A* Back     alignment and structure
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A* Back     alignment and structure
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A* Back     alignment and structure
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A* Back     alignment and structure
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A* Back     alignment and structure
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A* Back     alignment and structure
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A* Back     alignment and structure
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A* Back     alignment and structure
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A* Back     alignment and structure
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A* Back     alignment and structure
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A* Back     alignment and structure
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} Back     alignment and structure
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens} Back     alignment and structure
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Back     alignment and structure
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A Back     alignment and structure
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Back     alignment and structure
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Back     alignment and structure
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 263
d1po5a_ 465 a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabb 1e-25
d3czha1 463 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2 5e-25
d1r9oa_ 467 a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Huma 5e-23
d2ij2a1 453 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus 8e-22
d1tqna_ 472 a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Huma 1e-18
d2ciba1 445 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-stero 1e-14
d1izoa_ 411 a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Ba 2e-14
d1n97a_ 385 a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [Tax 2e-09
d1odoa_ 401 a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyce 1e-05
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 465 Back     information, alignment and structure

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Mammalian cytochrome p450 2b4
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  102 bits (254), Expect = 1e-25
 Identities = 43/265 (16%), Positives = 89/265 (33%), Gaps = 14/265 (5%)

Query: 2   IGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASR 61
           +G+L          R    +  KYG +FT+ +G    +V+  ++  +E      +A + R
Sbjct: 13  LGNLLQMDRKGL-LRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGR 71

Query: 62  PRRMAMEILGYNFLATPSSPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGL 121
            +   ++ +   +        G  WR  R+ +   +            R  E     +  
Sbjct: 72  GKIAVVDPIFQGY--GVIFANGERWRALRRFSLATMRDFGM-----GKRSVEERIQEEAR 124

Query: 122 FKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRYTSQ--EGTDLHEHAASFFTLFGK 179
               +   +    ++        T +II  I+ GKR+  +      L +     F+L   
Sbjct: 125 CLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRFDYKDPVFLRLLDLFFQSFSLISS 184

Query: 180 FVVSDALPFLRWLD-IGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDFIYVM 238
           F       F  +L    G  + + +  +E +  + Q +++H+     S      DFI V 
Sbjct: 185 FSSQVFELFSGFLKHFPGTHRQIYRNLQEINTFIGQSVEKHRATLDPSN---PRDFIDVY 241

Query: 239 LSLLYDNAKQLPDSDADTVIKALCL 263
           L  +  +            +    L
Sbjct: 242 LLRMEKDKSDPSSEFHHQNLILTVL 266
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 463 Back     information, alignment and structure
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo sapiens) [TaxId: 9606]} Length = 467 Back     information, alignment and structure
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 1404]} Length = 453 Back     information, alignment and structure
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]} Length = 472 Back     information, alignment and structure
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol demethylase (cyp51) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 445 Back     information, alignment and structure
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis [TaxId: 1423]} Length = 411 Back     information, alignment and structure
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]} Length = 385 Back     information, alignment and structure
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]} Length = 401 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query263
d2ij2a1 453 Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 99.97
d2ciba1 445 Cytochrome p450 14 alpha-sterol demethylase (cyp51 99.96
d1tqna_ 472 Mammalian cytochrome P450 3a4 {Human (Homo sapiens 99.95
d1r9oa_ 467 Mammalian cytochrome p450 2c9 {Human (Homo sapiens 99.92
d3czha1 463 Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapie 99.92
d1izoa_ 411 Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis 99.9
d1po5a_ 465 Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus 99.9
d1n97a_ 385 Cyp175a1 {Thermus thermophilus [TaxId: 274]} 99.86
d1odoa_ 401 Cyp154a1 monooxygenase {Streptomyces coelicolor [T 99.83
d1ueda_ 403 p450 monoxygenase OxyC {Amycolatopsis orientalis [ 99.8
d1z8oa1 402 Cytochrome P450-ERYF {Saccharopolyspora erythraea 99.79
d1gwia_ 403 Cyp154c1 monooxygenase {Streptomyces coelicolor [T 99.77
d1jfba_ 399 Cytochrome P450-NOR, nitric reductase {Fungus (Fus 99.76
d1q5da_ 401 Cytochrome P450epok {Sorangium cellulosum [TaxId: 99.69
d1re9a_ 404 Cytochrome P450-CAM {Pseudomonas putida [TaxId: 30 99.63
d1s1fa_ 399 Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]} 99.57
d1lfka_ 394 p450 monoxygenase OxyB {Amycolatopsis orientalis [ 99.57
d1cpta_ 428 Cytochrome P450-TERP {Pseudomonas sp. [TaxId: 306] 99.55
d1n40a_ 395 Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tub 99.46
d1io7a_ 366 Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2 99.25
d1ue8a_ 367 Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 11195 98.98
d1l3ka184 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 90.98
d1l3ka279 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 90.01
d1hd0a_75 Heterogeneous nuclear ribonucleoprotein d0 {Human 89.75
d1whxa_111 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 88.83
d1x0fa175 Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s 88.62
d1zh5a285 Lupus LA protein {Human (Homo sapiens) [TaxId: 960 87.25
d1uawa_77 Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} 86.86
d2ghpa275 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 86.82
d3begb187 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 86.64
d1whwa_99 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 83.98
d2adba1108 Polypyrimidine tract-binding protein {Human (Homo 83.85
d1no8a_78 Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 83.84
d1nu4a_91 Splicesomal U1A protein {Human (Homo sapiens) [Tax 83.46
d1x5ua193 Splicing factor 3B subunit 4 {Human (Homo sapiens) 83.4
d2msta_75 Neural RNA-binding protein Musashi-1 {Mouse (Mus m 83.18
d2u2fa_85 Splicing factor U2AF 65 KDa subunit {Human (Homo s 83.14
d1x5sa190 Cold-inducible RNA-binding protein {Human (Homo sa 82.56
d1wg4a_98 Splicing factor, arginine/serine-rich 9 (SFRS9) {M 81.71
d1wf2a_98 Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu 81.55
d1cvja180 Poly(A)-binding protein {Human (Homo sapiens) [Tax 81.5
d1h2vz_93 CBP20, 20KDa nuclear cap-binding protein {Human (H 80.91
d1p1ta_104 Cleavage stimulation factor, 64 kda subunit {Human 80.89
d2adca1109 Polypyrimidine tract-binding protein {Human (Homo 80.33
d1wf0a_88 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 80.16
d2cqda1103 RNA-binding region containing protein 1 {Human (Ho 80.11
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Cytochrome P450 bm-3
species: Bacillus megaterium [TaxId: 1404]

Probab=99.97  E-value=8e-30  Score=206.09  Aligned_cols=240  Identities=13%  Similarity=0.115  Sum_probs=175.7

Q ss_pred             CcccccccCCCCchhHHHHHHHhhcCCeEEEEecCeeEEEecCHHHHHHHHhhCCccccCCcchh-hhhhhhcCcccccc
Q 041575            1 MIGHLHLFGGPEPTHRILGNMANKYGPIFTMKMGVNRALVVSNSEITKECFTTNDKALASRPRRM-AMEILGYNFLATPS   79 (263)
Q Consensus         1 llG~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   79 (263)
                      ++||++++.. .+++..+.+|+++|||||++++|+.++|+|+||+++++++.++...+..++... .....+.   +++.
T Consensus        11 ~lG~l~~l~~-~~~~~~~~~~~~kyG~if~~~~~~~~~vvl~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~---~~~~   86 (453)
T d2ij2a1          11 ELKNLPLLNT-DKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFAGD---GLFT   86 (453)
T ss_dssp             GGTTGGGGCS-SCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTTTEEECCCHHHHHHHHHHTT---SGGG
T ss_pred             hhhCHHHhCC-CCHHHHHHHHHHHhCCEEEEEeCCceEEEECCHHHHHHHHhcCCcccccccHhHHHHHhcCC---cEEe
Confidence            5899998864 779999999999999999999999999999999999999976555554443322 2233332   4443


Q ss_pred             -CCCChhHHHHHhHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHhccccCCCCcceehhHHHHHHHHHHHHHHHHcccc
Q 041575           80 -SPYGSYWRETRKIATVELLSNHRLEKLKHVRESEVTASIKGLFKDCQNSATGKVSVEMKHWLEGTTFDIIIRIIEGKRY  158 (263)
Q Consensus        80 -~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~  158 (263)
                       ..+|+.|+++|+++.| .|++.+++.+.+.+.++++++++.|.+     ..+++++|+.+++..+++|+++.++||.++
T Consensus        87 ~~~~g~~wk~~Rk~l~~-~fs~~~l~~~~~~i~~~~~~li~~l~~-----~~~~~~idl~~~~~~~~~~~i~~~~fG~~~  160 (453)
T d2ij2a1          87 SWTHEKNWKKAHNILLP-SFSQQAMKGYHAMMVDIAVQLVQKWER-----LNADEHIEVPEDMTRLTLDTIGLCGFNYRF  160 (453)
T ss_dssp             SCTTSHHHHHHHHHHGG-GGSTTTHHHHHHHHHHHHHHHHHHHHT-----CCTTCCEEHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCChHHHHHHHHHHHH-HhhhhhhhhhhhhHHHHHHHHHHHhhh-----cCCCCccchHHHHHHHhhhcchhccccccc
Confidence             3459999999999998 789999999999999999999999974     334568999999999999999999999998


Q ss_pred             CCC---cchH-HHHHHHHHHHhhhcccccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcH
Q 041575          159 TSQ---EGTD-LHEHAASFFTLFGKFVVSDALPFLRWLDIGGNEKLMKKTAKEFDIILQQWLDEHKIKRGSSEVEGDEDF  234 (263)
Q Consensus       159 ~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~  234 (263)
                      +..   ...+ +......+...+..  +..+.|+....  ....+.+.+..+.+.+++++.++++++...     ...|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~-----~~~d~  231 (453)
T d2ij2a1         161 NSFYRDQPHPFITSMVRALDEAMNK--LQRANPDDPAY--DENKRQFQEDIKVMNDLVDKIIADRKASGE-----QSDDL  231 (453)
T ss_dssp             CGGGCSSCCHHHHHHHHHHHHHHHT--C---CTTSGGG--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCSSH
T ss_pred             chhhhccchHHHHhhhhccchhhhh--hhhcccccccc--hhhHHHHHHHHHHHHHHHHHHHhhhccccc-----cccch
Confidence            751   1222 33333333332222  11222322221  233456667778889999999988876533     34799


Q ss_pred             HHHHHhccccccccCCCCCchhhhhhhc
Q 041575          235 IYVMLSLLYDNAKQLPDSDADTVIKALC  262 (263)
Q Consensus       235 l~~ll~~~~~~~~~~~~~l~~~~i~~~~  262 (263)
                      ++.++.+.++.   .+..+++++|.+++
T Consensus       232 l~~ll~~~~~~---~~~~ls~~ei~~~~  256 (453)
T d2ij2a1         232 LTHMLNGKDPE---TGEPLDDENIRYQI  256 (453)
T ss_dssp             HHHHHHCCCTT---TCCCCCHHHHHHHH
T ss_pred             hhhhhhhcccc---cCcchhhhHHHhhh
Confidence            99999876543   25679999998765
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol demethylase (cyp51) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora erythraea [TaxId: 1836]} Back     information, alignment and structure
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase {Fungus (Fusarium oxysporum) [TaxId: 5507]} Back     information, alignment and structure
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum [TaxId: 56]} Back     information, alignment and structure
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp. [TaxId: 306]} Back     information, alignment and structure
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure