Citrus Sinensis ID: 041582

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
WSSNFSGRFLSNSQFHVPVHIFSPNTSVSPRSGSALDEARETPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNMNRPRAEASSLSIHQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHcc
Coil and Loop (DISEMBL)
wssnfsgrflsnsqfhvpvhifspntsvsprsgsaldearetpasiinEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLaplrgleevngnmnrpraeasslsihq
Flexible Loop (DISEMBL)
wssnfsgrFLSNSQFHVPVHIFSPNTSVSPRSGSALDEaretpasiinekrlkrvisnresarrsrmRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGleevngnmnrpraeasslsihq
Low Complexity Region (SEG)
WSSNFSGRFLSNSQFHVPVHIFSPNTSVSPRSGSALDEARETPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNMNRPRAEASSLSIHQ
Disordered region (IsUnstruct)
**************FHVPVHI**********************************************************VNHVQTVNHQLSEKLISLLE*****************SLQLVISDLLAPLR***********************
Disordered Region (DISOPRED)
*********************************************************NRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGL*********************
Disordered Region (DISEMBL)
WSSNFSGRFLSNSQFHVPVHIFSPNT*************RETPASIINEKRLKRVIS***********KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNMNR************
Disordered Region (DISPRO)
********************************************************************KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEE*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
WSSNFSGRFLSNSQFHVPVHIFSPNTSVSPRSGSALDEARETPASIINEKRLKRVISNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNMNRPRAEASSLSIHQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
P24068	151	Ocs element-binding facto	N/A	no	0.699	0.708	0.333	1e-06
Q69IL4	380	Transcription factor RF2a	no	no	0.490	0.197	0.36	3e-06
Q9M7Q3	454	ABSCISIC ACID-INSENSITIVE	no	no	0.542	0.182	0.357	4e-06
Q6S4P4	329	Transcription factor RF2b	no	no	0.490	0.227	0.346	9e-06
Q04088	398	Probable transcription fa	no	no	0.490	0.188	0.36	1e-05
Q9FUD3	277	Basic leucine zipper 9 OS	no	no	0.594	0.328	0.346	1e-05
Q9M7Q5	392	ABSCISIC ACID-INSENSITIVE	no	no	0.522	0.204	0.337	2e-05
Q9FGX2	145	Basic leucine zipper 1 OS	no	no	0.562	0.593	0.337	2e-05
P42774	315	G-box-binding factor 1 OS	no	no	0.653	0.317	0.324	3e-05
Q99142	265	Transcriptional activator	N/A	no	0.431	0.249	0.424	3e-05

>sp|P24068|OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 10/117 (8%)

Query: 25  NTSVSPR----SGSALDEARETPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQV 80
           ++S+SP     SGS  D A +T       +R KR +SNRESARRSR+RK++ ++EL  +V
Sbjct: 3   SSSLSPTAGRTSGSDGDSAADT------HRREKRRLSNRESARRSRLRKQQHLDELVQEV 56

Query: 81  NHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNG 137
             +Q  N +++ +   +     ++ QEN+ L+ + + L   +  +   LR +EE +G
Sbjct: 57  ARLQADNARVAARARDIASQYTRVEQENTVLRARAAELGDRLRSVNEVLRLVEEFSG 113

May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.
Zea mays (taxid: 4577)

>sp|Q69IL4|RF2A_ORYSJ Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 47/75 (62%)

Query: 45  SIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQI 104
           ++++ KR KR+ +NR+SA RS+ RK + I EL+ +V  +QT    LS +L  L      +
Sbjct: 178 ALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGL 237

Query: 105 VQENSQLKEKVSSLQ 119
             ENS+LK ++ +++
Sbjct: 238 TTENSELKLRLQTME 252

Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M7Q3|AI5L6_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 6 OS=Arabidopsis thaliana GN=ABF3 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 15/98 (15%)

Query: 17  VPVHIFSPNTSVSP--RSGSALDEA-----------RETPASI--INEKRLKRVISNRES 61
           V V   SP + +SP     SALD +           R+T A +  + E+R KR+I NRES
Sbjct: 326 VTVAAVSPGSQMSPDLTPKSALDASLSPVPYMFGRVRKTGAVLEKVIERRQKRMIKNRES 385

Query: 62  ARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLE 99
           A RSR RK+    EL+A++  ++ +N +L +K + ++E
Sbjct: 386 AARSRARKQAYTMELEAEIAQLKELNEELQKKQVEIME 423

Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6S4P4|RF2B_ORYSJ Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1

 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 46/75 (61%)

Query: 45  SIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQI 104
           + I+ KR KR+++NR+SA RS+ RK + I EL+ +V  +QT    LS +L         +
Sbjct: 129 AAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGL 188

Query: 105 VQENSQLKEKVSSLQ 119
             EN++LK ++ +++
Sbjct: 189 SAENAELKIRLQAME 203

Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q04088|POF21_ARATH Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 48/75 (64%)

Query: 45  SIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQI 104
           ++I+ KR KR+ +NR+SA RS+ RK + I EL+ +V  +QT    LS +L  L    + +
Sbjct: 198 ALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGL 257

Query: 105 VQENSQLKEKVSSLQ 119
             EN++LK ++ +++
Sbjct: 258 TVENNELKLRLQTME 272

Putative transcription factor with an activatory role.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FUD3|BZIP9_ARATH Basic leucine zipper 9 OS=Arabidopsis thaliana GN=BZIP9 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 10/101 (9%)

Query: 37  DEARETPAS---IINE----KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQ 89
           DE  ET A    + N+    KR++R+ SNRESA+RSR RK++ + +L+ QV+ ++  N  
Sbjct: 102 DEDAETEAGQSEMTNDPNDLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVDSLKGDNST 161

Query: 90  LSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS---DLLA 127
           L ++LI   +        N  LK  V +L++ +    DL+A
Sbjct: 162 LYKQLIDATQQFRSAGTNNRVLKSDVETLRVKVKLAEDLVA 202

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q5|AI5L4_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 4 OS=Arabidopsis thaliana GN=ABF1 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 48/80 (60%)

Query: 49  EKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQEN 108
           E+R KR+I NRESA RSR RK+    EL+A++  ++ VN  L +K   ++++++  ++E 
Sbjct: 312 ERRQKRMIKNRESAARSRARKQAYTLELEAEIESLKLVNQDLQKKQAEIMKTHNSELKEF 371

Query: 109 SQLKEKVSSLQLVISDLLAP 128
           S+    ++  Q +   L  P
Sbjct: 372 SKQPPLLAKRQCLRRTLTGP 391

Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGX2|BZIP1_ARATH Basic leucine zipper 1 OS=Arabidopsis thaliana GN=BZIP1 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 54/86 (62%)

Query: 40  RETPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLE 99
           + +  S I+EK+ KR +SNRESARRSR++K+KL+E+   +++ ++    + SE+  ++ +
Sbjct: 6   KTSSGSDIDEKKRKRKLSNRESARRSRLKKQKLMEDTIHEISSLERRIKENSERCRAVKQ 65

Query: 100 SNHQIVQENSQLKEKVSSLQLVISDL 125
               +  EN+ L+ +   L   +SDL
Sbjct: 66  RLDSVETENAGLRSEKIWLSSYVSDL 91

Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters involved in sugar signaling. Activated by low energy stress both at transcriptional and post-transcriptional mechanisms. Promotes dark-induced senescence and participates in the transcriptional reprogramming of amino acid metabolism during the dark-induced starvation response.

Arabidopsis thaliana (taxid: 3702)

>sp|P42774|GBF1_ARATH G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 17/117 (14%)

Query: 14  QFHVPVHIFSPNTSV-------SPRSGSALDEARETPASIINEKRLKRVISNRESARRSR 66
           Q  VP+   +P T++       S ++G  + + RE        KR KR  SNRESARRSR
Sbjct: 188 QGSVPMKPVAPGTNLNIGMDLWSSQAGVPVKDEREL-------KRQKRKQSNRESARRSR 240

Query: 67  MRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS 123
           +RK+   E+LQ +V  +   N  L ++L  L     ++  EN+ ++++   LQ V+ 
Sbjct: 241 LRKQAECEQLQQRVESLSNENQSLRDELQRLSSECDKLKSENNSIQDE---LQRVLG 294

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

>sp|Q99142|TAF1_TOBAC Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 42/66 (63%)

Query: 50  KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENS 109
           KR KR  SNRESARRSR+RK+   EEL  +V  +   N  L  ++  L+E++ ++  EN+
Sbjct: 196 KREKRKQSNRESARRSRLRKQAEAEELAIRVQSLTAENMTLKSEINKLMENSEKLKLENA 255

Query: 110 QLKEKV 115
            L E++
Sbjct: 256 ALMERL 261

Trans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter.

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
255547065	190	DNA binding protein, putative [Ricinus c	0.862	0.694	0.616	2e-34
224133052	101	predicted protein [Populus trichocarpa]	0.653	0.990	0.66	7e-28
15239443	206	basic leucine-zipper 70 [Arabidopsis tha	0.921	0.684	0.52	5e-26
10176910	188	unnamed protein product [Arabidopsis tha	0.941	0.765	0.509	1e-25
297793643	194	bZIP transcription factor family protein	0.901	0.711	0.5	3e-25
297835658	187	bZIP transcription factor family protein	0.901	0.737	0.5	6e-25
449439673	224	PREDICTED: light-inducible protein CPRF3	0.614	0.419	0.595	3e-24
255579930	195	Ocs element-binding factor, putative [Ri	0.751	0.589	0.508	7e-21
53983008	176	putative bZIPtranscription factor protei	0.836	0.727	0.496	2e-20
297789341	178	hypothetical protein ARALYDRAFT_920430 [	0.647	0.556	0.584	3e-20

>gi|255547065|ref|XP_002514590.1| DNA binding protein, putative [Ricinus communis] gi|223546194|gb|EEF47696.1| DNA binding protein, putative [Ricinus communis]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/133 (61%), Positives = 103/133 (77%), Gaps = 1/133 (0%)

Query: 15  FHVPVHIFSPNTSVSPRSGSALDEARETPASIINEKRLKRVISNRESARRSRMRKKKLIE 74
            H P+HIFS NTS +  + S+L++         +E++LKR+ISNRESARRSR+RKKK IE
Sbjct: 58  IHFPLHIFSTNTSPA-SADSSLNKTSNHQVGNSHERKLKRMISNRESARRSRIRKKKQIE 116

Query: 75  ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEE 134
           EL  QVNH++T+NHQLSEK+I LLE+N QI+QENSQLKE+VSSLQLV+SDLL P+R +EE
Sbjct: 117 ELDCQVNHLRTMNHQLSEKVIHLLENNQQILQENSQLKERVSSLQLVLSDLLIPMRNVEE 176

Query: 135 VNGNMNRPRAEAS 147
              N NR R E S
Sbjct: 177 SICNPNRLRGETS 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133052|ref|XP_002321470.1| predicted protein [Populus trichocarpa] gi|222868466|gb|EEF05597.1| predicted protein [Populus trichocarpa]

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 84/100 (84%)

Query: 49  EKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQEN 108
           EK+L+R+ISNRESARRSRMR+KK IE+LQ +VN +Q +NHQLSEK+I LLESNHQ +QEN
Sbjct: 1   EKKLRRMISNRESARRSRMRRKKQIEDLQYRVNQLQNMNHQLSEKVIHLLESNHQTLQEN 60

Query: 109 SQLKEKVSSLQLVISDLLAPLRGLEEVNGNMNRPRAEASS 148
           SQLKEKVSSLQ+V+SDLL PLR +++ + N    + E S+
Sbjct: 61  SQLKEKVSSLQVVLSDLLTPLRNVDDGDCNGIHLKGETSN 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239443|ref|NP_200891.1| basic leucine-zipper 70 [Arabidopsis thaliana] gi|332010001|gb|AED97384.1| basic leucine-zipper 70 [Arabidopsis thaliana]

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/150 (52%), Positives = 100/150 (66%), Gaps = 9/150 (6%)

Query: 5   FSGRFLSNSQFHVPVHIFSPNTSVSPRSGSALDEARET----PASIINEKRLKRVISNRE 60
           F+  FL N+ F+V  H+ S N S    + S LD   E           E+R +R++SNRE
Sbjct: 25  FNSAFLPNTDFNV--HLQS-NVSTRINNQSHLDPNAENIFHNEGLAPEERRARRMVSNRE 81

Query: 61  SARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL 120
           SARRSRMRKKK IEELQ QV  +  +NH LSEK+I+LLESNHQI+QENSQLKEKVSS  L
Sbjct: 82  SARRSRMRKKKQIEELQQQVEQLMMLNHHLSEKVINLLESNHQILQENSQLKEKVSSFHL 141

Query: 121 VISDLLAPLRGLE-EVNG-NMNRPRAEASS 148
           +++D+L P+R  E  +N  N+N  R E S+
Sbjct: 142 LMADVLLPMRNAESNINDRNVNYLRGEPSN 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10176910|dbj|BAB10103.1| unnamed protein product [Arabidopsis thaliana]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/153 (50%), Positives = 101/153 (66%), Gaps = 9/153 (5%)

Query: 2   SSNFSGRFLSNSQFHVPVHIFSPNTSVSPRSGSALDEARET----PASIINEKRLKRVIS 57
             +F+  FL N+ F+V  H+ S N S    + S LD   E           E+R +R++S
Sbjct: 30  DDHFNSAFLPNTDFNV--HLQS-NVSTRINNQSHLDPNAENIFHNEGLAPEERRARRMVS 86

Query: 58  NRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS 117
           NRESARRSRMRKKK IEELQ QV  +  +NH LSEK+I+LLESNHQI+QENSQLKEKVSS
Sbjct: 87  NRESARRSRMRKKKQIEELQQQVEQLMMLNHHLSEKVINLLESNHQILQENSQLKEKVSS 146

Query: 118 LQLVISDLLAPLRGLE-EVNG-NMNRPRAEASS 148
             L+++D+L P+R  E  +N  N+N  R E S+
Sbjct: 147 FHLLMADVLLPMRNAESNINDRNVNYLRGEPSN 179

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793643|ref|XP_002864706.1| bZIP transcription factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297310541|gb|EFH40965.1| bZIP transcription factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/152 (50%), Positives = 98/152 (64%), Gaps = 14/152 (9%)

Query: 5   FSGRFLSNSQFHVPVHIFSPNTSVSPRSG--SALDEARET----PASIINEKRLKRVISN 58
           FS  FL N+ F+V +       S+S R+   S LD   E           E+R +R++SN
Sbjct: 25  FSSAFLPNTDFNVQL------NSISTRNNNQSHLDPNAENIFHNEGLAPEERRARRMVSN 78

Query: 59  RESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118
           RESARRSRMRKKK IEELQ QV  +  +NH L EK+I+LLESNHQI+ ENSQLKEKVSS 
Sbjct: 79  RESARRSRMRKKKQIEELQQQVEQLMMLNHHLHEKVINLLESNHQILHENSQLKEKVSSF 138

Query: 119 QLVISDLLAPLRGLE-EVNG-NMNRPRAEASS 148
            L+++D+L P+R  E  +N  N+N  R E S+
Sbjct: 139 HLLMADVLLPMRNAESNINDRNVNYLRGETSN 170

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835658|ref|XP_002885711.1| bZIP transcription factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297331551|gb|EFH61970.1| bZIP transcription factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/152 (50%), Positives = 97/152 (63%), Gaps = 14/152 (9%)

Query: 5   FSGRFLSNSQFHVPVHIFSPNTSVSPRSG--SALDEARET----PASIINEKRLKRVISN 58
           FS  FL N+ F+V +       S+S RS   S LD   E           E+R +R++SN
Sbjct: 25  FSSAFLPNTDFNVQL------NSISTRSNNQSHLDPNAENIFHNEGLAPEERRARRMVSN 78

Query: 59  RESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL 118
           RESARRSRMRKKK IEELQ QV  +  +NH L EK+I+LLESNHQI+ ENSQLKEK SS 
Sbjct: 79  RESARRSRMRKKKQIEELQQQVEQLMMLNHHLHEKVINLLESNHQILHENSQLKEKASSF 138

Query: 119 QLVISDLLAPLRGLE-EVNG-NMNRPRAEASS 148
            L+++D+L P+R  E  +N  N+N  R E S+
Sbjct: 139 HLLMADVLLPMRNAESNINDRNVNYLRGETSN 170

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439673|ref|XP_004137610.1| PREDICTED: light-inducible protein CPRF3-like [Cucumis sativus]

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 75/94 (79%)

Query: 45  SIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQI 104
           +++ E++L+R+ISNRESARRSRMRKKK IEELQ QV  ++  N QLSEKLI ++E N QI
Sbjct: 115 TVMAERKLRRMISNRESARRSRMRKKKQIEELQYQVGQLEVSNRQLSEKLIQVVECNQQI 174

Query: 105 VQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGN 138
           + EN++LK KVSSLQ++++D L PLR  E+  GN
Sbjct: 175 LHENAELKRKVSSLQIILTDFLTPLRNCEDAFGN 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579930|ref|XP_002530800.1| Ocs element-binding factor, putative [Ricinus communis] gi|223529621|gb|EEF31568.1| Ocs element-binding factor, putative [Ricinus communis]

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 86/120 (71%), Gaps = 5/120 (4%)

Query: 37  DEARETPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLIS 96
           DEA E   S+INE++ +R+ISNRESARRSRMRK+K ++EL +QV  ++  NHQL +KL  
Sbjct: 68  DEADEQQLSLINERKQRRMISNRESARRSRMRKQKHLDELWSQVIWLRNENHQLIDKLNH 127

Query: 97  LLESNHQIVQENSQLKEKVSSLQLVISDL-----LAPLRGLEEVNGNMNRPRAEASSLSI 151
           + E + Q+VQEN+QLKE+ S L+ ++SDL      A LR L+E+  N +  RAE+S+ SI
Sbjct: 128 VSECHDQVVQENAQLKEETSELRQMLSDLQLNSPYATLRDLQEIPCNTDYLRAESSNQSI 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|53983008|gb|AAV25871.1| putative bZIPtranscription factor protein [Brassica oleracea]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/135 (49%), Positives = 90/135 (66%), Gaps = 7/135 (5%)

Query: 5   FSGRFLSNSQFHVPVHIFSPNTSVSPRSGSALDEARETPASIINE---KRLKRVISNRES 61
           F+  FL N+ FHV +    PN+S    +    + +   P    NE   +R +R++SNRES
Sbjct: 25  FNSAFLPNANFHVSLQSLPPNSSTHNNN----NRSHLNPTIYHNEGLERRARRMVSNRES 80

Query: 62  ARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLV 121
           ARRSRMR KK I+ELQ QV  +  +NH LSEK+I LLESNHQI+QENSQLKEKVSS QL+
Sbjct: 81  ARRSRMRTKKQIQELQQQVEQLMILNHNLSEKVIHLLESNHQILQENSQLKEKVSSFQLL 140

Query: 122 ISDLLAPLRGLEEVN 136
           ++++  P+R    +N
Sbjct: 141 MAEMQIPMRMDGSIN 155

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297789341|ref|XP_002862649.1| hypothetical protein ARALYDRAFT_920430 [Arabidopsis lyrata subsp. lyrata] gi|297308294|gb|EFH38907.1| hypothetical protein ARALYDRAFT_920430 [Arabidopsis lyrata subsp. lyrata]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 73/101 (72%), Gaps = 2/101 (1%)

Query: 50  KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENS 109
           K+  R ISNRE ARRSRMRKKK IEELQ QV  +  +NH L EK+I+ LESNHQI+ ENS
Sbjct: 68  KKSSRNISNREYARRSRMRKKKQIEELQQQVKQLMMLNHHLHEKVINFLESNHQILHENS 127

Query: 110 QLKEKVSSLQLVISDLLAPLRGLE-EVNG-NMNRPRAEASS 148
           QLKEK SS  L+++D+L P+R  E  +N  N+N  R E S+
Sbjct: 128 QLKEKASSFHLLMADVLLPMRIAESNINDRNVNYLRGETSN 168

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
TAIR|locus:2159325	206	bZIP70 "AT5G60830" [Arabidopsi	0.928	0.689	0.516	1.6e-29
TAIR|locus:2092595	173	bZIP42 "AT3G30530" [Arabidopsi	0.816	0.722	0.470	1.2e-19
TAIR|locus:2166650	165	bZIP43 "AT5G38800" [Arabidopsi	0.647	0.6	0.494	1.5e-19
TAIR|locus:1005716856	137	bZIP75 "AT5G08141" [Arabidopsi	0.490	0.547	0.610	1.8e-16
TAIR|locus:2143191	186	bZIP3 "AT5G15830" [Arabidopsis	0.627	0.516	0.444	4.7e-16
TAIR|locus:2009932	196	bZIP58 "AT1G13600" [Arabidopsi	0.607	0.474	0.436	3.3e-15
TAIR|locus:2827461	166	bZIP48 "AT2G04038" [Arabidopsi	0.614	0.566	0.382	7.9e-14
TAIR|locus:2139584	159	GBF6 "AT4G34590" [Arabidopsis	0.745	0.716	0.336	7.1e-13
TAIR|locus:2053124	171	bZIP2 "AT2G18160" [Arabidopsis	0.660	0.590	0.365	1.3e-11
TAIR|locus:2202852	148	bZIP4 "AT1G59530" [Arabidopsis	0.516	0.533	0.392	2.8e-11

TAIR|locus:2159325 bZIP70 "AT5G60830" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 78/151 (51%), Positives = 101/151 (66%)

Query:     4 NFSGRFLSNSQFHVPVHIFSPNTSVSPRSGSALDEARET----PASIINEKRLKRVISNR 59
             +F+  FL N+ F+V  H+ S N S    + S LD   E           E+R +R++SNR
Sbjct:    24 HFNSAFLPNTDFNV--HLQS-NVSTRINNQSHLDPNAENIFHNEGLAPEERRARRMVSNR 80

Query:    60 ESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ 119
             ESARRSRMRKKK IEELQ QV  +  +NH LSEK+I+LLESNHQI+QENSQLKEKVSS  
Sbjct:    81 ESARRSRMRKKKQIEELQQQVEQLMMLNHHLSEKVINLLESNHQILQENSQLKEKVSSFH 140

Query:   120 LVISDLLAPLRGLEE-VNG-NMNRPRAEASS 148
             L+++D+L P+R  E  +N  N+N  R E S+
Sbjct:   141 LLMADVLLPMRNAESNINDRNVNYLRGEPSN 171

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2092595 bZIP42 "AT3G30530" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 63/134 (47%), Positives = 90/134 (67%)

Query:     1 WSSNF--SGRFLSNSQFHVPVHIF-SPNT---SVSPRSG-SALDEARE--TPASIINEKR 51
             + SNF  S  F +N Q    ++ F SP     S+S  S  S  DEA E  T  +IINE++
Sbjct:    23 YPSNFPISTPFPTNGQNPYLLYGFQSPTNNPQSMSLSSNNSTSDEAEEQQTNNNIINERK 82

Query:    52 LKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQL 111
              +R+ISNRESARRSRMRK++ ++EL +QV  ++  NHQL +KL +L ES+ +++QEN+QL
Sbjct:    83 QRRMISNRESARRSRMRKQRHLDELWSQVMWLRIENHQLLDKLNNLSESHDKVLQENAQL 142

Query:   112 KEKVSSLQLVISDL 125
             KE+   L+ VISD+
Sbjct:   143 KEETFELKQVISDM 156

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2166650 bZIP43 "AT5G38800" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 49/99 (49%), Positives = 70/99 (70%)

Query:    27 SVSPRSGSALDEARETPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTV 86
             S+   + S  DEA E    IINE++ KR ISNRESARRSRMRK++ ++EL +QV  ++  
Sbjct:    49 SLISSNNSTSDEAEENHKEIINERKQKRKISNRESARRSRMRKQRQVDELWSQVMWLRDE 108

Query:    87 NHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125
             NHQL  KL  +LES  ++++EN QLKE+ + L+ +ISD+
Sbjct:   109 NHQLLRKLNCVLESQEKVIEENVQLKEETTELKQMISDM 147

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:1005716856 bZIP75 "AT5G08141" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 47/77 (61%), Positives = 55/77 (71%)

Query:    49 EKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQEN 108
             EKRL+R+ SNRESARR+RMR++ + E LQ QV  +   N  L  K ISLLE NHQI+QEN
Sbjct:    36 EKRLRRMASNRESARRTRMRERMMKEGLQMQVKQLMAYNQFLYNKYISLLEYNHQILQEN 95

Query:   109 SQLKEKVSSL--QLVIS 123
             SQLKE VSS   Q  IS
Sbjct:    96 SQLKETVSSFHDQYTIS 112

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2143191 bZIP3 "AT5G15830" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 44/99 (44%), Positives = 71/99 (71%)

Query:    29 SPRSGSAL--DEARETPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTV 86
             SP S ++   D+A E    +INE++ +R++SNRESARRSRMRK++ ++EL +QV  +++ 
Sbjct:    52 SPVSNNSTTSDDATEE-IFVINERKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSE 110

Query:    87 NHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125
             NHQL +KL  + ++N  ++QENS LKE+   L+ VI+ +
Sbjct:   111 NHQLLDKLNQVSDNNDLVIQENSSLKEENLELRQVITSM 149

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2009932 bZIP58 "AT1G13600" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 41/94 (43%), Positives = 69/94 (73%)

Query:    32 SGSALDEARETPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLS 91
             + S  DE  +  + +I+E++ +R+ISNRESARRSRMRK++ ++EL +QV  ++T NH L 
Sbjct:    69 NNSTSDEDHQQ-SMVIDERKQRRMISNRESARRSRMRKQRHLDELWSQVIRLRTDNHCLM 127

Query:    92 EKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125
             +KL  + ES+   ++EN++LKE+ S L+ +IS++
Sbjct:   128 DKLNRVSESHELALKENAKLKEETSDLRQLISEI 161

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2827461 bZIP48 "AT2G04038" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 36/94 (38%), Positives = 66/94 (70%)

Query:    32 SGSALDEARETPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLS 91
             + S  DE       +++E++ +R++SNRESARRSRMRK++ ++EL +QV  ++  N+ L 
Sbjct:    56 NNSTSDEDHHQSIMVLDERKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLI 115

Query:    92 EKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125
             +KL  + E+ + +++ENS+LKE+ S L+ ++ +L
Sbjct:   116 DKLNRVSETQNCVLKENSKLKEEASDLRQLVCEL 149

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2139584 GBF6 "AT4G34590" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 39/116 (33%), Positives = 71/116 (61%)

Query:    26 TSVSPRSGSALDEARETPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQT 85
             +S S  + S +  +  +  S++ +++ KR++SNRESARRSRM+K+KL+++L AQVNH++ 
Sbjct:     3 SSSSGTTSSTIQTSSGSEESLMEQRKRKRMLSNRESARRSRMKKQKLLDDLTAQVNHLKK 62

Query:    86 VNHQLSEKLISLLESNHQIVQ-ENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNMN 140
              N ++    +S+   ++  V+ ENS L+ ++  L   +  L   +  L+  N N N
Sbjct:    63 ENTEIVTS-VSITTQHYLTVEAENSVLRAQLDELNHRLQSLNDIIEFLDSSNNNNN 117

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0080149 "sucrose induced translational repression" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=IEP

TAIR|locus:2053124 bZIP2 "AT2G18160" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 38/104 (36%), Positives = 62/104 (59%)

Query:    25 NTSVSPRSGSALDEARETPA-SII--NEKRLKRVISNRESARRSRMRKKKLIEELQAQVN 81
             ++S + RS S+ D     P+ S++  +E++ KR++SNRESARRSRMRK+K +++L AQ+N
Sbjct:     3 SSSSTYRSSSSSDGGNNNPSDSVVTVDERKRKRMLSNRESARRSRMRKQKHVDDLTAQIN 62

Query:    82 HVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL 125
              +   N Q+   L    +   +I  ENS L  ++  L   +  L
Sbjct:    63 QLSNDNRQILNSLTVTSQLYMKIQAENSVLTAQMEELSTRLQSL 106

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2202852 bZIP4 "AT1G59530" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 31/79 (39%), Positives = 54/79 (68%)

Query:    47 INEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQ 106
             +++K+ +R ISNRESA+RSRM+KKK  EEL  +VN +   N +L  +L +++   + I +
Sbjct:    47 VDDKKRRRTISNRESAKRSRMKKKKRFEELTEEVNRLNIRNQELKNRLANVVSCGNFISR 106

Query:   107 ENSQLKEKVSSLQLVISDL 125
             EN++LK +   L++ + +L
Sbjct:   107 ENNRLKTESVCLEIRLLEL 125

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XV.683.1 hypothetical protein (101 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	153
smart00338	65	smart00338, BRLZ, basic region leucin zipper	3e-11
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	1e-06
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	1e-05

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 55.3 bits (134), Expect = 3e-11
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 49  EKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQEN 108
           EKR +R   NRE+ARRSR RKK  IEEL+ +V  ++  N +L +++  L     ++  E 
Sbjct: 4   EKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63

Query: 109 SQ 110
            +
Sbjct: 64  EE 65

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 25/60 (41%), Positives = 36/60 (60%)

Query: 50  KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENS 109
           KR +R   NRE+ARRSR+RKK  IEEL+ +V  ++  N  L  +L  L +   ++  EN 
Sbjct: 5   KRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLKSENE 64

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 49 EKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISL 97
          ++   R   N E+ARRSR +KK+  EEL+ +V  ++  N QL +K+  L
Sbjct: 3  DEYRDRRRRNNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQL 51

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
smart00338	65	BRLZ basic region leucin zipper.	99.49
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.47
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.44
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.43
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.2
KOG3584	348	consensus cAMP response element binding protein an	99.19
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	99.1
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.11
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.99
KOG0837	279	consensus Transcriptional activator of the JUN fam	97.98
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.28
KOG3119	269	consensus Basic region leucine zipper transcriptio	97.21
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	97.11
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.74
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	96.6
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.6
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	96.55
PRK15422	79	septal ring assembly protein ZapB; Provisional	96.49
PRK13169	110	DNA replication intiation control protein YabA; Re	96.46
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	96.44
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	95.98
PRK13169	110	DNA replication intiation control protein YabA; Re	95.22
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	95.07
COG4467	114	Regulator of replication initiation timing [Replic	94.69
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	94.61
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	94.23
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	94.22
COG4467	114	Regulator of replication initiation timing [Replic	94.05
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.03
PRK10884	206	SH3 domain-containing protein; Provisional	93.8
KOG1318	411	consensus Helix loop helix transcription factor EB	93.73
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	93.66
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	93.59
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	93.41
COG4026	290	Uncharacterized protein containing TOPRIM domain,	93.36
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	93.3
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	93.14
PRK10884	206	SH3 domain-containing protein; Provisional	92.83
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	92.64
PF14662	193	CCDC155: Coiled-coil region of CCDC155	92.54
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	92.46
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	92.33
PRK02119	73	hypothetical protein; Provisional	92.19
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	91.98
PRK15422	79	septal ring assembly protein ZapB; Provisional	91.83
PRK11637	428	AmiB activator; Provisional	91.77
PF15294	278	Leu_zip: Leucine zipper	91.76
PRK00295	68	hypothetical protein; Provisional	91.67
PRK02793	72	phi X174 lysis protein; Provisional	91.6
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	91.58
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	91.44
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	91.31
PRK11637	428	AmiB activator; Provisional	91.22
PRK00736	68	hypothetical protein; Provisional	91.02
PRK04325	74	hypothetical protein; Provisional	90.98
PRK04406	75	hypothetical protein; Provisional	90.91
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	90.71
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	90.33
PRK02119	73	hypothetical protein; Provisional	90.32
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	90.17
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	90.07
PRK04406	75	hypothetical protein; Provisional	89.55
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	89.28
PRK00846	77	hypothetical protein; Provisional	88.78
KOG3119	269	consensus Basic region leucine zipper transcriptio	88.68
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	88.53
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	88.42
smart00338	65	BRLZ basic region leucin zipper.	88.41
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	88.28
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	88.26
KOG4797	123	consensus Transcriptional regulator [Transcription	88.24
PRK13922	276	rod shape-determining protein MreC; Provisional	88.23
PRK04325	74	hypothetical protein; Provisional	88.22
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	88.16
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	87.69
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	87.57
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	87.56
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	87.52
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	87.44
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	87.24
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	87.17
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	86.76
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	86.69
PF05103	131	DivIVA: DivIVA protein; InterPro: IPR007793 The Ba	86.47
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	86.46
PRK00846	77	hypothetical protein; Provisional	86.38
PRK02793	72	phi X174 lysis protein; Provisional	86.27
KOG1962	216	consensus B-cell receptor-associated protein and r	86.1
PRK09039	343	hypothetical protein; Validated	86.07
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	85.92
PF14662	193	CCDC155: Coiled-coil region of CCDC155	85.9
PRK00295	68	hypothetical protein; Provisional	85.7
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	85.65
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	85.54
COG4026	290	Uncharacterized protein containing TOPRIM domain,	85.4
smart00340	44	HALZ homeobox associated leucin zipper.	85.2
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	85.12
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	85.12
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	84.99
PRK09039	343	hypothetical protein; Validated	84.96
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	84.83
PRK00888	105	ftsB cell division protein FtsB; Reviewed	84.71
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	84.68
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	84.5
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	84.26
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	84.2
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	84.02
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	84.0
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	83.85
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	83.84
COG4942	420	Membrane-bound metallopeptidase [Cell division and	83.82
PF15058	200	Speriolin_N: Speriolin N terminus	83.45
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	82.82
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	82.53
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	82.5
PRK00888	105	ftsB cell division protein FtsB; Reviewed	82.18
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	82.14
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	81.91
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	81.91
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	81.75
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	81.25
PF00038	312	Filament: Intermediate filament protein; InterPro:	81.13
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	80.46
PRK00736	68	hypothetical protein; Provisional	80.19

>smart00338 BRLZ basic region leucin zipper

Probab=99.49  E-value=2.8e-13  Score=91.58  Aligned_cols=62  Identities=39%  Similarity=0.484  Sum_probs=56.5

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           47 INEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQEN  108 (153)
Q Consensus        47 ~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN  108 (153)
                      .|+|+.+|+++||+||++||.||+.|+.+||.+|..|+.+|..|..++..|..++..|..++
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999999999998877777666654

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.47  E-value=1e-12  Score=110.61  Aligned_cols=81  Identities=26%  Similarity=0.352  Sum_probs=76.7

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582           46 IINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL  125 (153)
Q Consensus        46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~  125 (153)
                      +.|+|-.||+++||++|+-+|.|||++++++|.++.+|+.+|..|..++..|+.+++.|+++|.+|..+++.++.-|.+.
T Consensus        65 S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~  144 (292)
T KOG4005|consen   65 SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL  144 (292)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999888776655


Q ss_pred             c
Q 041582          126 L  126 (153)
Q Consensus       126 ~  126 (153)
                      .
T Consensus       145 ~  145 (292)
T KOG4005|consen  145 K  145 (292)
T ss_pred             H
Confidence            4

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.44  E-value=1e-12  Score=120.19  Aligned_cols=93  Identities=33%  Similarity=0.451  Sum_probs=79.8

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H
Q 041582           46 IINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLK------------E  113 (153)
Q Consensus        46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr------------~  113 (153)
                      ..--||+.|||+||+||..||+|||+|+..||.+++.|..||+.|+.++..|+++...|+.||..|+            .
T Consensus       277 ~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~qKk~R  356 (655)
T KOG4343|consen  277 IKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRNQKKKR  356 (655)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCcccccccch
Confidence            4445678899999999999999999999999999999999999999999999999999999999986            3


Q ss_pred             HHHHHHHHHHHhc---c-CcccccccCCC
Q 041582          114 KVSSLQLVISDLL---A-PLRGLEEVNGN  138 (153)
Q Consensus       114 ~l~~Lq~~L~d~~---~-~~~~~~~~~~n  138 (153)
                      ++.+....|++++   + ||.+.+..+++
T Consensus       357 kvvaimv~maFi~f~~~~p~ni~nnln~s  385 (655)
T KOG4343|consen  357 KVVAIMVVMAFIIFNYGSPMNILNNLNIS  385 (655)
T ss_pred             hhhhHHHHHHHHHHhccCcccccCCcccc
Confidence            4555555555555   3 99998887655

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.43  E-value=1.4e-12  Score=88.08  Aligned_cols=63  Identities=40%  Similarity=0.546  Sum_probs=56.9

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           47 INEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENS  109 (153)
Q Consensus        47 ~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~  109 (153)
                      .+.|+.+|+++||+||++||.||+.|+++|+.+|..|+.+|..|..++..|...+..|..+|.
T Consensus         2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~   64 (64)
T PF00170_consen    2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH   64 (64)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            456889999999999999999999999999999999999999999999999988888888873

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.20  E-value=1.4e-10  Score=76.19  Aligned_cols=52  Identities=44%  Similarity=0.562  Sum_probs=47.8

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           47 INEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLE   99 (153)
Q Consensus        47 ~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~   99 (153)
                      .++++.||. +||+||++||.||+.++.+|+.+|..|+.+|..|..++..|+.
T Consensus         2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~   53 (54)
T PF07716_consen    2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER   53 (54)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467788888 9999999999999999999999999999999999999887754

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.19  E-value=4.1e-11  Score=103.31  Aligned_cols=58  Identities=34%  Similarity=0.432  Sum_probs=51.5

Q ss_pred             ccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           44 ASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESN  101 (153)
Q Consensus        44 ~~~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~  101 (153)
                      ....-.||+-|++||||+||.+|+|||+|+.+||.+|..|+.+|..|..++..|.+-|
T Consensus       285 aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY  342 (348)
T KOG3584|consen  285 AEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY  342 (348)
T ss_pred             chhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence            3455567888999999999999999999999999999999999999999998886544

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=99.10  E-value=1.4e-10  Score=104.64  Aligned_cols=70  Identities=31%  Similarity=0.414  Sum_probs=57.8

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           46 IINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI  122 (153)
Q Consensus        46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L  122 (153)
                      ....||.||+|+|.+||+.||+|||+|++.||.+|....++|++|.+++.+|+.       +|..|-++|..||+++
T Consensus       247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~-------~N~sLl~qL~klQt~v  316 (472)
T KOG0709|consen  247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELEL-------SNRSLLAQLKKLQTLV  316 (472)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhh-------ccHHHHHHHHHHHHHH
Confidence            456678899999999999999999999999999999999999999999987755       4555555555554443

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.11  E-value=2.8e-08  Score=71.72  Aligned_cols=55  Identities=31%  Similarity=0.419  Sum_probs=45.7

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           46 IINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLES  100 (153)
Q Consensus        46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~  100 (153)
                      ..+-|..||.++||.+|+.||.||..++.+|+.++..|..+...|..++..+...
T Consensus        26 ~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e   80 (92)
T PF03131_consen   26 IAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQE   80 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556889999999999999999999999999999988887777766666555443

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.99  E-value=0.00011  Score=63.52  Aligned_cols=59  Identities=20%  Similarity=0.275  Sum_probs=49.0

Q ss_pred             cCCccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           41 ETPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLE   99 (153)
Q Consensus        41 ~~~~~~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~   99 (153)
                      +.+....+.+..|..+.|..+|.|.|+||++..+.|+-++..|+.+|.+|+.++..|.+
T Consensus       218 ~~~~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~ler  276 (294)
T KOG4571|consen  218 AHPYKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELER  276 (294)
T ss_pred             CCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666788888999999999999999999999999999999888876543

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=97.98  E-value=3e-05  Score=66.35  Aligned_cols=64  Identities=30%  Similarity=0.478  Sum_probs=50.1

Q ss_pred             HHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           49 EKRLK-RVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        49 ~KR~R-R~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      ..|.. ..++||++|.+||.||.+++..||.+|..|..+|..|...+..              |+..+..+.+.+..+.
T Consensus       204 ~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~--------------l~~~v~e~k~~V~~hi  268 (279)
T KOG0837|consen  204 KIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSK--------------LKEQVAELKQKVMEHI  268 (279)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence            33444 4799999999999999999999999999999999888777765              4555555555555554

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.28  E-value=0.0038  Score=48.70  Aligned_cols=68  Identities=25%  Similarity=0.343  Sum_probs=46.2

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           47 INEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLV  121 (153)
Q Consensus        47 ~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~  121 (153)
                      .-.|-.||-++||=-|+-+|-|+...-.+||.+-..|..+...|..+       +..+..|-..++.+...|+..
T Consensus        50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e-------~s~~~~E~da~k~k~e~l~~~  117 (135)
T KOG4196|consen   50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEE-------NSRLRRELDAYKSKYEALQNS  117 (135)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Confidence            34577789999999999999999998888876655555544444443       334445555566666655533

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=97.21  E-value=0.006  Score=51.87  Aligned_cols=52  Identities=23%  Similarity=0.315  Sum_probs=43.9

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           46 IINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISL   97 (153)
Q Consensus        46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L   97 (153)
                      ..+++=.-|.-+|=++++|||.+.+...+++..+|..|+.||..|+.++..|
T Consensus       190 ~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l  241 (269)
T KOG3119|consen  190 KKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQL  241 (269)
T ss_pred             cCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445545577789999999999999999999999999999999888887754

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=97.11  E-value=0.0058  Score=42.33  Aligned_cols=63  Identities=24%  Similarity=0.295  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEV  135 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~  135 (153)
                      +..|+.+|..|-.....|..++..|..+...+..|+..|.++....+..+.-++..+..||+.
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq~   64 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQH   64 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence            567888888888888888888888888888999999999999999999988888887777765

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.74  E-value=0.013  Score=41.04  Aligned_cols=57  Identities=26%  Similarity=0.343  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLLES-------NHQIVQENSQLKEKVSSLQLVISDLLAP  128 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~-------~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~  128 (153)
                      -++.||.+|..+-..+..|..++..|.++       ...|..||..|+.+-...+.+|..+++.
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k   68 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45667776666555555555555555555       5566666666666666666666665544

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.60  E-value=0.021  Score=40.52  Aligned_cols=57  Identities=26%  Similarity=0.369  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPL  129 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~  129 (153)
                      +.-|.-+|+.|...|+.|..+...++.....|..||..|+.+-...+.+|.-+++.|
T Consensus        20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm   76 (79)
T COG3074          20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM   76 (79)
T ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            455677889999999999999999999999999999999999999998888888774

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.60  E-value=0.025  Score=39.66  Aligned_cols=53  Identities=28%  Similarity=0.320  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS  123 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~  123 (153)
                      .-+.-|..++..|+.+|..|..+...|...+..|..+-.....++..|-..|.
T Consensus        18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~   70 (72)
T PF06005_consen   18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45667778888888888888888888888888888888877777777665554

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=96.55  E-value=0.006  Score=57.43  Aligned_cols=67  Identities=27%  Similarity=0.298  Sum_probs=53.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Q 041582           53 KRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL-QLVISDLL  126 (153)
Q Consensus        53 RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L-q~~L~d~~  126 (153)
                      ||.=|||.||+++|+||..-+..||..|..|+.+-.+|..+-.       .+..+-..++.++..| +.++.++.
T Consensus       493 RRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~-------~~d~~L~~~kqqls~L~~~Vf~~lr  560 (604)
T KOG3863|consen  493 RRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERD-------ELDSTLGVMKQQLSELYQEVFQQLR  560 (604)
T ss_pred             ccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6888999999999999999999999999999999888777654       3445666677777777 44444444

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=96.49  E-value=0.025  Score=40.67  Aligned_cols=57  Identities=25%  Similarity=0.377  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPL  129 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~  129 (153)
                      +.-|.-+|+.|+.+|..|..++..+......|..||..|+.+-...+.+|..+++-|
T Consensus        20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm   76 (79)
T PRK15422         20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM   76 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344556666777777777777777777777789999999999999999998888764

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=96.46  E-value=0.021  Score=43.10  Aligned_cols=47  Identities=26%  Similarity=0.429  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL  118 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L  118 (153)
                      .+..||.++..+..+...|+..+..|.+++..|..||..||..+..+
T Consensus         9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45667777777777777777777777666666666666666666655

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=96.44  E-value=0.023  Score=42.59  Aligned_cols=47  Identities=28%  Similarity=0.471  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL  118 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L  118 (153)
                      .+..||.++..|-.+...|+..+..|.+++..|..||..|+..|..+
T Consensus         9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~   55 (107)
T PF06156_consen    9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL   55 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555555555555555444444

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=95.98  E-value=0.069  Score=39.98  Aligned_cols=53  Identities=23%  Similarity=0.315  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582           75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA  127 (153)
Q Consensus        75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~  127 (153)
                      +|=..+..|+.....|..++..|......|..||..|+.+-..|+.+|.....
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56678999999999999999999999999999999999999999999998765

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=95.22  E-value=0.19  Score=37.98  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      .+|=.++..|+.....|..++..|......|..||..|+.+-..|+..|....
T Consensus         4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~   56 (110)
T PRK13169          4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE   56 (110)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35667899999999999999999999999999999999999999999999763

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=95.07  E-value=0.13  Score=33.01  Aligned_cols=41  Identities=20%  Similarity=0.258  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           82 HVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI  122 (153)
Q Consensus        82 ~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L  122 (153)
                      +|+.+...|+.....|...+..|..||..|++++..|...|
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl   42 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL   42 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46677777888888888888888999999999998887655

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=94.69  E-value=0.16  Score=38.62  Aligned_cols=46  Identities=22%  Similarity=0.249  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD  124 (153)
Q Consensus        79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d  124 (153)
                      +|..|+.....|.++++.|.++...|..||..|+-+...|+.+|.+
T Consensus         9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            3444444445555555555555556666666666666666666665

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=94.61  E-value=0.5  Score=32.72  Aligned_cols=55  Identities=20%  Similarity=0.300  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL  125 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~  125 (153)
                      ..++.|-.....|+.+|..|..++..+..+...|...|..-+.++..+-.+|.-+
T Consensus         7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l   61 (65)
T TIGR02449         7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL   61 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            4678888999999999999999999999999999999999999999887776544

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=94.23  E-value=1.5  Score=31.71  Aligned_cols=78  Identities=18%  Similarity=0.299  Sum_probs=68.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           49 EKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        49 ~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      .++..+.+.+=+++-..|.-+.....+++.++..|......|..++......+..|+.-|.++..+|......+..++
T Consensus        10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL   87 (89)
T PF13747_consen   10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL   87 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456777888888888888878888899999999999999999999999999999999999999999988877666655

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=94.22  E-value=0.0036  Score=55.68  Aligned_cols=56  Identities=34%  Similarity=0.329  Sum_probs=49.0

Q ss_pred             CCccchhHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 041582           42 TPASIINEKRLKRVISNRESARR---SRMRKKKLIEELQAQVNHVQ-TVNHQLSEKLISL   97 (153)
Q Consensus        42 ~~~~~~e~KR~RR~lkNReSArr---SR~RKk~~l~eLE~kv~~Le-~eN~~L~~~i~~L   97 (153)
                      ......+.|+..|+..|+.+|.+   +|.+++.+...|..+|+.|+ .++..|..++..|
T Consensus       146 ~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~L  205 (395)
T KOG1414|consen  146 VLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPL  205 (395)
T ss_pred             CCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccc
Confidence            34678899999999999999999   99999999999999999999 8877766666544

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=94.05  E-value=0.34  Score=36.91  Aligned_cols=47  Identities=26%  Similarity=0.373  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS  117 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~  117 (153)
                      ..+.+||.++..+-.+...|++.+..|.+++..|.-||..||.+|..
T Consensus         8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            35789999999999999999999999999999999999999999988

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.03  E-value=2.6  Score=33.78  Aligned_cols=67  Identities=15%  Similarity=0.088  Sum_probs=40.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           53 KRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        53 RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      ..+...+..-+.-.......+.++..-++.|..|...|..++..++.+...|..||..|-.+.....
T Consensus       119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k  185 (194)
T PF08614_consen  119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK  185 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444555566666666666666666666777777777777777777766655443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.80  E-value=0.71  Score=38.10  Aligned_cols=46  Identities=11%  Similarity=0.190  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV  115 (153)
Q Consensus        70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l  115 (153)
                      ++.+..++..+..|+.+|.+|..++..++.+...|..+|..++..+
T Consensus       124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455556666666777776666666666666666666665543

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=93.73  E-value=1.9  Score=39.28  Aligned_cols=118  Identities=18%  Similarity=0.186  Sum_probs=68.1

Q ss_pred             CCCCCCCCCCCcccccCCCCCCCCCCCCCCcccccCCccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 041582            7 GRFLSNSQFHVPVHIFSPNTSVSPRSGSALDEARETPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHV---   83 (153)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~L---   83 (153)
                      ..|++-.+|++|++.+.....++.-  +.....-...+...++|..||+...-+==||-|.+=...+.+|-.-|-..   
T Consensus       188 ~~~~~~~~~~~~~~~~~~~s~~s~~--~~~~rt~~~~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~  265 (411)
T KOG1318|consen  188 NVYPSEGQFNVPMTGHDSASCPSQL--SIGPRTHPKTDATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSE  265 (411)
T ss_pred             ccccccCCCCCCCCccccccCcccc--CCCCCCCCCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence            3455557888888887764422221  11111111344555666666666666777777777777777776644333   


Q ss_pred             -------------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           84 -------------QTVNHQLSEKLI---SLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        84 -------------e~eN~~L~~~i~---~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                                   ...+..|.+..+   +++.....|+..|+.|..+++.|......+-
T Consensus       266 ~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~  324 (411)
T KOG1318|consen  266 DMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALRIEELKSEAGRHG  324 (411)
T ss_pred             hhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence                         333444444333   3344455677778888888888776655554

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=93.66  E-value=0.28  Score=45.38  Aligned_cols=51  Identities=18%  Similarity=0.145  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLV  121 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~  121 (153)
                      ....+||.+++.|+.+.+.|.++...++++...|+.||..|+.++..+...
T Consensus        76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~  126 (475)
T PRK13729         76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN  126 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            356889999999999999999999999999999999999999999665443

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=93.59  E-value=1.2  Score=33.64  Aligned_cols=62  Identities=15%  Similarity=0.220  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           65 SRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        65 SR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      |+.-....+..|+..++.+......|..+-..|......|..+|..+-.++..|++.|.++.
T Consensus        10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~   71 (107)
T PF09304_consen   10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR   71 (107)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555555555555555555555555555555555555555555555555555544

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=93.41  E-value=0.86  Score=32.06  Aligned_cols=53  Identities=25%  Similarity=0.378  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHh
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNH--------QIVQENSQLKEKVSSLQLVISDL  125 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~--------~L~~EN~~Lr~~l~~Lq~~L~d~  125 (153)
                      +.+.+..+..|..||-.|+-+|-.|.+...        .+..+|-.|+.++..|+..|...
T Consensus         2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~   62 (75)
T PF07989_consen    2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEK   62 (75)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999988887655        46677777777777776555443

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=93.36  E-value=0.4  Score=41.05  Aligned_cols=54  Identities=26%  Similarity=0.285  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      ++++..+...|..++..|..++..+++....|+.||+.|.+.+..|-.-+.++.
T Consensus       144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~  197 (290)
T COG4026         144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK  197 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence            344444445555555555555666666777788888888777655544444443

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=93.30  E-value=1.4  Score=30.53  Aligned_cols=54  Identities=19%  Similarity=0.197  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS  123 (153)
Q Consensus        70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~  123 (153)
                      +.+++-+..++...+.+|..|..+-.....+....-.+|..|+.++..|+..|.
T Consensus        11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~   64 (69)
T PF14197_consen   11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE   64 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777777777777777777777777777777777777777777776554

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=93.14  E-value=0.73  Score=31.58  Aligned_cols=49  Identities=16%  Similarity=0.284  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      +++.+||.++..++.-...|...+...+.+...|..+...|..++..+.
T Consensus         4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5788888888888888888888888777777777777777777666665

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=92.83  E-value=3.6  Score=33.93  Aligned_cols=50  Identities=16%  Similarity=0.116  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      .+...+|..++.........|..++..|.+++..+.+++..|+.++..++
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884        117 NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666777777777777777777777777777777777777777777775

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=92.64  E-value=1.1  Score=38.72  Aligned_cols=76  Identities=22%  Similarity=0.388  Sum_probs=60.0

Q ss_pred             ccchhHHHHHHHHHhHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           44 ASIINEKRLKRVISNRE--SARRSRMRKKKL-IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        44 ~~~~e~KR~RR~lkNRe--SArrSR~RKk~~-l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      ....+.||.|-...---  --++.|+-+.+| +.+|+.+-+.|+.||..|+.+...|..+++.|..+-..|+++|..+.
T Consensus        67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~  145 (292)
T KOG4005|consen   67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELK  145 (292)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence            77777888774433222  233455556555 68999999999999999999999999999999999999999998884

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=92.54  E-value=0.99  Score=37.31  Aligned_cols=54  Identities=24%  Similarity=0.354  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL  125 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~  125 (153)
                      -+++|+..-..|..+|..|...+..+.+....|..|+..|+.++..++..|...
T Consensus         9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a   62 (193)
T PF14662_consen    9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA   62 (193)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677777777777777777777777777777777777777777776555443

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=92.46  E-value=1.2  Score=35.88  Aligned_cols=41  Identities=22%  Similarity=0.357  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      ....+..+|..|..++..|+.++..|..||..|..++..+.
T Consensus        98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~  138 (161)
T TIGR02894        98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE  138 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46667778888888888888888888888888877776654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=92.33  E-value=1.5  Score=31.46  Aligned_cols=48  Identities=25%  Similarity=0.331  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL  120 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~  120 (153)
                      -+.|..++..|+.....|..++...+..+..|..||.-|..=+..|..
T Consensus        18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~   65 (80)
T PF10224_consen   18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS   65 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366778888888888899999999999999999999999888888843

The exact function is unknown.

>PRK02119 hypothetical protein; Provisional

Probab=92.19  E-value=1.4  Score=30.81  Aligned_cols=48  Identities=15%  Similarity=0.241  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL  125 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~  125 (153)
                      +++.+||.++...+.-...|...+...+.+.       ..|+.++..|..+|.++
T Consensus         9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~i-------d~L~~ql~~L~~rl~~~   56 (73)
T PRK02119          9 NRIAELEMKIAFQENLLEELNQALIEQQFVI-------DKMQVQLRYMANKLKDM   56 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence            4566666666666666666666665555444       44455555555555444

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=91.98  E-value=3.1  Score=32.58  Aligned_cols=76  Identities=25%  Similarity=0.224  Sum_probs=50.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 041582           54 RVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPL  129 (153)
Q Consensus        54 R~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~  129 (153)
                      -...|.+.+-.--.-+++.+..|+.++..+..+...|...+..+......|..+-...+.++..|-....+...-|
T Consensus        35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l  110 (140)
T PF10473_consen   35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLL  110 (140)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3556666666666777777777777777777777777777777766666666666666666666655544444333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=91.83  E-value=1.3  Score=31.86  Aligned_cols=44  Identities=23%  Similarity=0.310  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEK  114 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~  114 (153)
                      +-++.||.+|...-..+.-|..+|..|.+++..|..|+..++..
T Consensus         4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~   47 (79)
T PRK15422          4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ   47 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34678899998888888888888888888888888877664333

>PRK11637 AmiB activator; Provisional

Probab=91.77  E-value=4.8  Score=35.75  Aligned_cols=58  Identities=7%  Similarity=0.117  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      -...+..|+.++..++.+...+..++..++.+...+..+-..++.++..++..|...+
T Consensus        73 ~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl  130 (428)
T PRK11637         73 LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL  130 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666666666666666666666666666666666666655555444

>PF15294 Leu_zip: Leucine zipper

Probab=91.76  E-value=1  Score=39.05  Aligned_cols=51  Identities=27%  Similarity=0.367  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      |..++..|+.||..|+.++..++.++...+.|+..|..+|..|+...++..
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~  180 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQK  180 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            778899999999999999999999999999999999999999998555544

>PRK00295 hypothetical protein; Provisional

Probab=91.67  E-value=2.1  Score=29.43  Aligned_cols=47  Identities=11%  Similarity=0.164  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS  117 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~  117 (153)
                      +++.+||.++...+.-...|...+...+.+...|..+-+.|..++..
T Consensus         5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~   51 (68)
T PRK00295          5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE   51 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35888888888888888888888776665555555544444444444

>PRK02793 phi X174 lysis protein; Provisional

Probab=91.60  E-value=1.8  Score=30.12  Aligned_cols=47  Identities=13%  Similarity=0.151  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS  117 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~  117 (153)
                      +++.+||.++...+.-...|...+...+.+...|..+-+.|..++..
T Consensus         8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~   54 (72)
T PRK02793          8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA   54 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46777777777777777777777666555554444444444444333

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=91.58  E-value=3.5  Score=31.49  Aligned_cols=66  Identities=24%  Similarity=0.287  Sum_probs=40.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           52 LKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS  117 (153)
Q Consensus        52 ~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~  117 (153)
                      ..|=...|+.......++...++.|+..+..|+.++..+..++..++.....+..++..+...+..
T Consensus        47 ~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~  112 (151)
T PF11559_consen   47 RDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ  112 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666666667666777777777777777666666666665555555554444444333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=91.44  E-value=0.72  Score=30.66  Aligned_cols=50  Identities=16%  Similarity=0.137  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           68 RKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL  120 (153)
Q Consensus        68 RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~  120 (153)
                      |+..++.+|+.++..-.   ..=...-.........|..||..|+++|..++.
T Consensus         1 kw~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~   50 (52)
T PF12808_consen    1 KWLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERLRS   50 (52)
T ss_pred             CHHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45667788887766443   111112234556677888999999999987764

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>TIGR00219 mreC rod shape-determining protein MreC

Probab=91.31  E-value=0.58  Score=40.01  Aligned_cols=38  Identities=26%  Similarity=0.380  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 041582           79 QVNHVQTVNHQLSEKLISLLESNH----QIVQENSQLKEKVS  116 (153)
Q Consensus        79 kv~~Le~eN~~L~~~i~~L~~~~~----~L~~EN~~Lr~~l~  116 (153)
                      .+..|.+||.+|+.++..|..+..    .+..||.+||+-|.
T Consensus        67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~  108 (283)
T TIGR00219        67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN  108 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455677888888887766633333    37778888777543

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>PRK11637 AmiB activator; Provisional

Probab=91.22  E-value=6.2  Score=35.06  Aligned_cols=73  Identities=15%  Similarity=0.150  Sum_probs=44.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           54 RVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        54 R~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      .+.+............+..+.+++.++..+..+...+..++..++.+...+..+-..|..++..++..|....
T Consensus        51 ~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~  123 (428)
T PRK11637         51 SIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE  123 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444555666666666666666666667776766777777777777777766666655544

>PRK00736 hypothetical protein; Provisional

Probab=91.02  E-value=2.3  Score=29.18  Aligned_cols=46  Identities=20%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVS  116 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~  116 (153)
                      .++.+||.++...+.-...|...+..-+.+...|..+-+.|..++.
T Consensus         5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~   50 (68)
T PRK00736          5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL   50 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4588999999988888888888777666555554444444444433

>PRK04325 hypothetical protein; Provisional

Probab=90.98  E-value=2.4  Score=29.57  Aligned_cols=47  Identities=17%  Similarity=0.186  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL  125 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~  125 (153)
                      ++.+||.++...+.-...|...+..-+.+...       |..++..|..+|.++
T Consensus        10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~-------L~~ql~~L~~rl~~~   56 (74)
T PRK04325         10 RITELEIQLAFQEDLIDGLNATVARQQQTLDL-------LQAQLRLLYQQMRDA   56 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence            47777777777777777777766655554444       444555555555444

>PRK04406 hypothetical protein; Provisional

Probab=90.91  E-value=2.4  Score=29.78  Aligned_cols=48  Identities=10%  Similarity=0.169  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      ++.+||.++..++.-...|...+...+       .+...|+.++..|..+|.++.
T Consensus        12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq-------~~I~~L~~ql~~L~~rl~~~~   59 (75)
T PRK04406         12 RINDLECQLAFQEQTIEELNDALSQQQ-------LLITKMQDQMKYVVGKVKNMD   59 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhc
Confidence            455566666655555555555555444       444555555555555555543

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=90.71  E-value=2.8  Score=32.51  Aligned_cols=55  Identities=25%  Similarity=0.399  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD  124 (153)
Q Consensus        70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d  124 (153)
                      ...++.++.++..|+.++..+-.+|..|+.++..|..+-..+..++..+...+.+
T Consensus        13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee   67 (143)
T PF12718_consen   13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEE   67 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456677777777777777777777777777777776666666666666544443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=90.33  E-value=2.7  Score=30.54  Aligned_cols=42  Identities=26%  Similarity=0.324  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 041582           81 NHVQTVNHQLSEKLISLLESN------HQIVQENSQLKEKVSSLQLVI  122 (153)
Q Consensus        81 ~~Le~eN~~L~~~i~~L~~~~------~~L~~EN~~Lr~~l~~Lq~~L  122 (153)
                      ..+..+|..|..+|..|+.++      .....||..|++++..|+..-
T Consensus        20 ~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~   67 (86)
T PF12711_consen   20 SYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY   67 (86)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677778888888887654      467899999999999887654

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>PRK02119 hypothetical protein; Provisional

Probab=90.32  E-value=4.1  Score=28.37  Aligned_cols=54  Identities=11%  Similarity=0.136  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLE  133 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~  133 (153)
                      +..++.++..|+...+-....|..|       -..-..-..++..|+..|..+...+..++
T Consensus         4 ~~~~e~Ri~~LE~rla~QE~tie~L-------N~~v~~Qq~~id~L~~ql~~L~~rl~~~~   57 (73)
T PRK02119          4 QQNLENRIAELEMKIAFQENLLEEL-------NQALIEQQFVIDKMQVQLRYMANKLKDMQ   57 (73)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4567777777776665555555443       22233344455667666666665555554

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=90.17  E-value=2.3  Score=39.39  Aligned_cols=20  Identities=15%  Similarity=0.331  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 041582           74 EELQAQVNHVQTVNHQLSEK   93 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~   93 (153)
                      ..|..+-+.|..||..|+++
T Consensus        76 ~~l~~~N~~l~~eN~~L~~r   95 (472)
T TIGR03752        76 AKLISENEALKAENERLQKR   95 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            45555555555555555553

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=90.07  E-value=0.6  Score=37.61  Aligned_cols=43  Identities=21%  Similarity=0.404  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      ++|+|.++++.-..|.-|..+|.+    ...|..++++||.++.+|+
T Consensus         2 LeD~EsklN~AIERnalLE~ELdE----KE~L~~~~QRLkDE~RDLK   44 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESELDE----KENLREEVQRLKDELRDLK   44 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCH-----------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            689999999999999888888832    3345555555555555554

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PRK04406 hypothetical protein; Provisional

Probab=89.55  E-value=5.2  Score=28.09  Aligned_cols=55  Identities=15%  Similarity=0.231  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEE  134 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~  134 (153)
                      ++.|+.++..|+...+-+...|..|       -..-.....++..|+..|..+...+..+++
T Consensus         6 ~~~le~Ri~~LE~~lAfQE~tIe~L-------N~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~   60 (75)
T PRK04406          6 IEQLEERINDLECQLAFQEQTIEEL-------NDALSQQQLLITKMQDQMKYVVGKVKNMDS   60 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3457777777776666555555443       233333445557777777766666555553

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=89.28  E-value=5.2  Score=37.77  Aligned_cols=69  Identities=20%  Similarity=0.313  Sum_probs=38.0

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           54 RVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI  122 (153)
Q Consensus        54 R~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L  122 (153)
                      .+++-..........-+.+++.|+..+...+.++..|..+...+......+..|+..|..+...+...+
T Consensus       154 eL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri  222 (546)
T PF07888_consen  154 ELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRI  222 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555555555555555566666666666666666666555555555555555555555544444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK00846 hypothetical protein; Provisional

Probab=88.78  E-value=4.3  Score=28.89  Aligned_cols=49  Identities=16%  Similarity=0.164  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      +++.+||.++...+.-...|...+.       ....+...|+.++..|...|.++.
T Consensus        13 ~Ri~~LE~rlAfQe~tIe~LN~~v~-------~qq~~I~~L~~ql~~L~~rL~~~~   61 (77)
T PRK00846         13 ARLVELETRLSFQEQALTELSEALA-------DARLTGARNAELIRHLLEDLGKVR   61 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455555555555555555555544       444555566666666666666665

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=88.68  E-value=6  Score=33.68  Aligned_cols=52  Identities=13%  Similarity=0.273  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD  124 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d  124 (153)
                      .+-+......-+....++..++..|..++..|..+...|+.++..|+..+..
T Consensus       203 N~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~  254 (269)
T KOG3119|consen  203 NEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ  254 (269)
T ss_pred             hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444443444444444555555555555555555555555554444444433

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=88.53  E-value=4.6  Score=35.62  Aligned_cols=46  Identities=24%  Similarity=0.348  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      ++|...+..|+.+|..|+.++......+..|..+|..|+.....++
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~   68 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQ   68 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666666666666666666666666666666666666554444

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=88.42  E-value=3.1  Score=37.47  Aligned_cols=52  Identities=21%  Similarity=0.289  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           66 RMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS  117 (153)
Q Consensus        66 R~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~  117 (153)
                      =.|-+.+...||.-+..++.||..|..++..+.+++...+.|+..|-.++.+
T Consensus       122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE  173 (401)
T PF06785_consen  122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE  173 (401)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            3566777788899999999999999999999999998888888887655543

>smart00338 BRLZ basic region leucin zipper

Probab=88.41  E-value=2.9  Score=27.75  Aligned_cols=27  Identities=26%  Similarity=0.298  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           95 ISLLESNHQIVQENSQLKEKVSSLQLV  121 (153)
Q Consensus        95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~  121 (153)
                      ..|+.+...|..+|..|+.++..|...
T Consensus        29 ~~Le~~~~~L~~en~~L~~~~~~l~~e   55 (65)
T smart00338       29 EELERKVEQLEAENERLKKEIERLRRE   55 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444433

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.28  E-value=13  Score=30.72  Aligned_cols=62  Identities=15%  Similarity=0.236  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           65 SRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        65 SR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      .+..-...+..|+.+++.|+..|..|...+...+.+...|..+...+..-...|.-.|.+++
T Consensus        50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~  111 (251)
T PF11932_consen   50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMI  111 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455556666666666666666666666666666666555555554444444444444

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=88.26  E-value=9.9  Score=36.75  Aligned_cols=40  Identities=15%  Similarity=0.203  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKE  113 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~  113 (153)
                      +-+..+..+|+.|...|+.++...++++..|+.|...|+.
T Consensus       541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~  580 (697)
T PF09726_consen  541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK  580 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3355666777777777777777777766666666655554

; GO: 0016021 integral to membrane

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=88.24  E-value=2.1  Score=32.85  Aligned_cols=42  Identities=31%  Similarity=0.329  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 041582           83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEK-----VSSLQLVISD  124 (153)
Q Consensus        83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~-----l~~Lq~~L~d  124 (153)
                      .+.|..-|+.+|.+|.+++..|+.||..||.-     |..|...+..
T Consensus        65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~~~~~~  111 (123)
T KOG4797|consen   65 VREEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLPAQLSP  111 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhccc
Confidence            34556677777888888888889999988854     4555555543

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=88.23  E-value=3.1  Score=34.70  Aligned_cols=38  Identities=24%  Similarity=0.385  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 041582           79 QVNHVQTVNHQLSEKLISLLESNH---QIVQENSQLKEKVS  116 (153)
Q Consensus        79 kv~~Le~eN~~L~~~i~~L~~~~~---~L~~EN~~Lr~~l~  116 (153)
                      ....+.+||..|++++..|+.+..   .+..||.+|+..+.
T Consensus        70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~  110 (276)
T PRK13922         70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN  110 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344455555555555555544333   56677777776543

>PRK04325 hypothetical protein; Provisional

Probab=88.22  E-value=6  Score=27.58  Aligned_cols=54  Identities=11%  Similarity=0.181  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLE  133 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~  133 (153)
                      +..++.++..|+...+-+...|..|       -..-..-..++..|+..|..+...+..++
T Consensus         4 ~~~~e~Ri~~LE~klAfQE~tIe~L-------N~vv~~Qq~~I~~L~~ql~~L~~rl~~~~   57 (74)
T PRK04325          4 VQEMEDRITELEIQLAFQEDLIDGL-------NATVARQQQTLDLLQAQLRLLYQQMRDAN   57 (74)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567777777776665555555444       22223334445666666666655555554

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=88.16  E-value=0.76  Score=31.40  Aligned_cols=30  Identities=33%  Similarity=0.401  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           85 TVNHQLSEKLISLLESNHQIVQENSQLKEK  114 (153)
Q Consensus        85 ~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~  114 (153)
                      .|...|+.+|..|..++..|+.||..||..
T Consensus        14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~   43 (59)
T PF01166_consen   14 EEVEVLKEQIAELEERNSQLEEENNLLKQN   43 (59)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345566777777777777888888888764

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=87.69  E-value=4.9  Score=38.83  Aligned_cols=76  Identities=18%  Similarity=0.205  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cCcccc-cccCCCCCC
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL--------APLRGL-EEVNGNMNR  141 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~--------~~~~~~-~~~~~n~~~  141 (153)
                      ..+.+||.+-+.|..+.+++..+++++++.......|-..|+..++..+..+.++.        .|++.| ++.+.-.+.
T Consensus        93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~pr~l~p  172 (907)
T KOG2264|consen   93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQIPRELEP  172 (907)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccCcccCCC
Confidence            56789999999999999999999999999888888899999999998888887776        477754 233333444


Q ss_pred             ccccc
Q 041582          142 PRAEA  146 (153)
Q Consensus       142 ~~~~~  146 (153)
                      +..-+
T Consensus       173 p~~~~  177 (907)
T KOG2264|consen  173 PSQIS  177 (907)
T ss_pred             ccccC
Confidence            43333

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=87.57  E-value=14  Score=30.11  Aligned_cols=79  Identities=18%  Similarity=0.219  Sum_probs=49.6

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 041582           48 NEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHV-------QTVNHQLSEKLISLLESNHQIV-------QENSQLKE  113 (153)
Q Consensus        48 e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~L-------e~eN~~L~~~i~~L~~~~~~L~-------~EN~~Lr~  113 (153)
                      +-+-.+.+|....+-+-.+.+.+.+...|+.++..-       +.+...|..++..|+++...+.       .|...|+.
T Consensus        87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks  166 (190)
T PF05266_consen   87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS  166 (190)
T ss_pred             ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556667778888888888888888888877755       5555555556666655543333       34455555


Q ss_pred             HHHHHHHHHHHhc
Q 041582          114 KVSSLQLVISDLL  126 (153)
Q Consensus       114 ~l~~Lq~~L~d~~  126 (153)
                      .+..+...+.++.
T Consensus       167 ~~~~l~~~~~~~e  179 (190)
T PF05266_consen  167 EAEALKEEIENAE  179 (190)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555544

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=87.56  E-value=15  Score=30.39  Aligned_cols=55  Identities=16%  Similarity=0.150  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA  127 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~  127 (153)
                      ..+|..++..|..+...|...+..++.....+..+-..|..++..+.....++.+
T Consensus        51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p  105 (251)
T PF11932_consen   51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP  105 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555566655666555666666666666666555544444444

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=87.52  E-value=5.6  Score=27.14  Aligned_cols=53  Identities=9%  Similarity=0.133  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582           75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA  127 (153)
Q Consensus        75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~  127 (153)
                      .|+.++..|+...+-+...|..|......-..+...|..++..|...|.++..
T Consensus         1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   53 (69)
T PF04102_consen    1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED   53 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            47889999999999988888888888888888888888888888888877653

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=87.44  E-value=17  Score=30.91  Aligned_cols=75  Identities=20%  Similarity=0.262  Sum_probs=39.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q 041582           50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLE---------SNHQIVQENSQLKEKVSSLQL  120 (153)
Q Consensus        50 KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~---------~~~~L~~EN~~Lr~~l~~Lq~  120 (153)
                      +-.+.+..-.+.+.+.-.-+...+++|+.+|..++.+...+..++..++.         ++..|..|-..++.++..|..
T Consensus        31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~  110 (239)
T COG1579          31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLED  110 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555555556666666666666666666666666555443         233344444444444444444


Q ss_pred             HHHH
Q 041582          121 VISD  124 (153)
Q Consensus       121 ~L~d  124 (153)
                      .|.+
T Consensus       111 el~~  114 (239)
T COG1579         111 ELAE  114 (239)
T ss_pred             HHHH
Confidence            3333

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=87.24  E-value=11  Score=28.66  Aligned_cols=52  Identities=19%  Similarity=0.232  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           67 MRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL  118 (153)
Q Consensus        67 ~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L  118 (153)
                      .|-..+.+.|..++..+..++..|...+..|..++..+..+...+..+...+
T Consensus        48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l   99 (151)
T PF11559_consen   48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQL   99 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444444444433333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.17  E-value=6.7  Score=27.97  Aligned_cols=47  Identities=23%  Similarity=0.305  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL  118 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L  118 (153)
                      -++.||.+|.+.-.-..-|.-++..|.++++.|..|-..+.....+|
T Consensus         5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL   51 (79)
T COG3074           5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREAL   51 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence            45667777766666666666666666666666655555554444444

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=86.76  E-value=5.8  Score=30.90  Aligned_cols=47  Identities=26%  Similarity=0.345  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKL--ISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i--~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      +..|+..+..|+.+...|....  ..|......|..|+..|..+|..|+
T Consensus        88 l~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~  136 (169)
T PF07106_consen   88 LAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR  136 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444443332  3344445555555555555555554

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=86.69  E-value=7.1  Score=36.87  Aligned_cols=62  Identities=15%  Similarity=0.321  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582           64 RSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL  125 (153)
Q Consensus        64 rSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~  125 (153)
                      +.+..-.+.+.+....+..++++...+...+..+..+...|..||..|..+|..++.+|.+-
T Consensus       134 k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E  195 (546)
T KOG0977|consen  134 KERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE  195 (546)
T ss_pred             HHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            33333344455566667777777777777888888888888888888888887777655443

>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []

Probab=86.47  E-value=0.41  Score=35.20  Aligned_cols=52  Identities=19%  Similarity=0.318  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI  122 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L  122 (153)
                      .|++.|...+..|..+|..|..++..|..+...+......|+..|...+...
T Consensus        25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a   76 (131)
T PF05103_consen   25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETA   76 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhH
Confidence            5889999999999999999999999888888888777777777765554433

Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=86.46  E-value=5.4  Score=26.37  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 041582           97 LLESNHQIVQENSQLKEKVSSL  118 (153)
Q Consensus        97 L~~~~~~L~~EN~~Lr~~l~~L  118 (153)
                      |+..+..|..+|..|+.++..|
T Consensus        31 Le~~~~~L~~en~~L~~~~~~L   52 (64)
T PF00170_consen   31 LEEKVEELESENEELKKELEQL   52 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PRK00846 hypothetical protein; Provisional

Probab=86.38  E-value=9.6  Score=27.13  Aligned_cols=53  Identities=15%  Similarity=0.160  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLE  133 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~  133 (153)
                      ++++.++..|+...+-....|       ..|-..-......+..|+.+|.-+...+..++
T Consensus         9 ~~le~Ri~~LE~rlAfQe~tI-------e~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~   61 (77)
T PRK00846          9 QALEARLVELETRLSFQEQAL-------TELSEALADARLTGARNAELIRHLLEDLGKVR   61 (77)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345555555554444333333       33333444455566667666666666655555

>PRK02793 phi X174 lysis protein; Provisional

Probab=86.27  E-value=9  Score=26.56  Aligned_cols=53  Identities=11%  Similarity=0.062  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      .+++.++..|+...+-....|..|......-..+...|..++..|..+|.++.
T Consensus         4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   56 (72)
T PRK02793          4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ   56 (72)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35889999999999999999999888888888888888999888888887764

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=86.10  E-value=3.5  Score=34.58  Aligned_cols=25  Identities=24%  Similarity=0.415  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           90 LSEKLISLLESNHQIVQENSQLKEK  114 (153)
Q Consensus        90 L~~~i~~L~~~~~~L~~EN~~Lr~~  114 (153)
                      |.++.+.+..+++.|..|+..|+.+
T Consensus       184 l~Kq~e~~~~EydrLlee~~~Lq~~  208 (216)
T KOG1962|consen  184 LKKQSEGLQDEYDRLLEEYSKLQEQ  208 (216)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHH
Confidence            3333333333344444444444333

>PRK09039 hypothetical protein; Validated

Probab=86.07  E-value=20  Score=31.45  Aligned_cols=51  Identities=18%  Similarity=0.152  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      ...+|..|..+...|+.++..|+.....++.+.+..+.++..|...|..++
T Consensus       135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~  185 (343)
T PRK09039        135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL  185 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334566666666666666666666666666666666666666655555443

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=85.92  E-value=4.3  Score=31.63  Aligned_cols=54  Identities=24%  Similarity=0.385  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLES--NHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~--~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      +.+|..++..|..++..|..++..|...  ...|..+...|+.++..|...|..+.
T Consensus        81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~  136 (169)
T PF07106_consen   81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR  136 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555442  34556666666666666666655544

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=85.90  E-value=6.3  Score=32.65  Aligned_cols=53  Identities=25%  Similarity=0.327  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      .+|-..|++|+.-|..|..++..|......+...|+.|..++..|+..+....
T Consensus         4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q   56 (193)
T PF14662_consen    4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ   56 (193)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666667777777777777777777777777777777777777766655443

>PRK00295 hypothetical protein; Provisional

Probab=85.70  E-value=9.3  Score=26.20  Aligned_cols=51  Identities=10%  Similarity=0.143  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      ++.++..|+...+-+...|..|......-..+...|+.++..|..+|.++.
T Consensus         3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295          3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            678899999999999988988888888878888889999999988888864

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=85.65  E-value=6.5  Score=34.61  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSS  117 (153)
Q Consensus        83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~  117 (153)
                      .+.+...|..++..++.+++.+..||..|...|..
T Consensus       232 QQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~  266 (306)
T PF04849_consen  232 QQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA  266 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            34455556666666666777777777666666543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=85.54  E-value=6.5  Score=37.13  Aligned_cols=68  Identities=22%  Similarity=0.329  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCC
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNM  139 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~~n~  139 (153)
                      .+..|+.++..|+.+......++..|..++..+...+..|..+...|...+.++...|.-|+++..++
T Consensus       165 e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l  232 (546)
T PF07888_consen  165 EVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTL  232 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444445555555556666666666777777777777887777777776655443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=85.40  E-value=5.3  Score=34.39  Aligned_cols=52  Identities=19%  Similarity=0.266  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI  122 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L  122 (153)
                      +..+++..+++.+..++..|..++..++..+..+..+-..|..+...|...+
T Consensus       135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~  186 (290)
T COG4026         135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEML  186 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666667777777777777777766666666666666666555554443

>smart00340 HALZ homeobox associated leucin zipper

Probab=85.20  E-value=2.1  Score=27.58  Aligned_cols=28  Identities=21%  Similarity=0.310  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           94 LISLLESNHQIVQENSQLKEKVSSLQLV  121 (153)
Q Consensus        94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~  121 (153)
                      .+.|.+-+..|..||+.|..+++.|++.
T Consensus         7 Ce~LKrcce~LteeNrRL~ke~~eLral   34 (44)
T smart00340        7 CELLKRCCESLTEENRRLQKEVQELRAL   34 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3557777888999999999999999864

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=85.12  E-value=3.4  Score=38.30  Aligned_cols=56  Identities=23%  Similarity=0.299  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLES---------------NHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~---------------~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      ..+.+++.++..|..+|..|+.+++.|+++               ...+..|-..|+.++..++.+|.++.
T Consensus        66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~  136 (472)
T TIGR03752        66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ  136 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355678888888888888888888888652               22344455555555555555555544

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=85.12  E-value=10  Score=27.93  Aligned_cols=9  Identities=33%  Similarity=0.534  Sum_probs=3.6

Q ss_pred             HHHHHHHHH
Q 041582           70 KKLIEELQA   78 (153)
Q Consensus        70 k~~l~eLE~   78 (153)
                      ++.++.|+.
T Consensus        34 ~~~~~~l~~   42 (106)
T PF10805_consen   34 REDIEKLEE   42 (106)
T ss_pred             HHHHHHHHH
Confidence            334444433

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=84.99  E-value=6.3  Score=33.38  Aligned_cols=43  Identities=23%  Similarity=0.260  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL  120 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~  120 (153)
                      .+..+||.++..+..+...|.       .+...|.+.|-.|=+++..|+.
T Consensus        93 ~Rn~ELE~elr~~~~~~~~L~-------~Ev~~L~~DN~kLYEKiRylqS  135 (248)
T PF08172_consen   93 QRNAELEEELRKQQQTISSLR-------REVESLRADNVKLYEKIRYLQS  135 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence            334667666665555555544       4455677889999899888864

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PRK09039 hypothetical protein; Validated

Probab=84.96  E-value=7.1  Score=34.26  Aligned_cols=41  Identities=15%  Similarity=0.127  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQL  111 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~L  111 (153)
                      ..+.-|..+++.|+.+...|...+..++.+......+-..|
T Consensus       137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L  177 (343)
T PRK09039        137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL  177 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555444444444444333333333

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=84.83  E-value=9.8  Score=30.69  Aligned_cols=53  Identities=17%  Similarity=0.194  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL  125 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~  125 (153)
                      ...++.+...|+.++..|..++..|+.++..|..+...+.+....|-..|..+
T Consensus        99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA  151 (161)
T TIGR02894        99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA  151 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666666666666666666666666666665444433

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=84.71  E-value=3.2  Score=30.72  Aligned_cols=27  Identities=19%  Similarity=0.196  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISL   97 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L   97 (153)
                      +.+.+++.+++.++.+|..|..++..|
T Consensus        34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L   60 (105)
T PRK00888         34 DQVAAQQQTNAKLKARNDQLFAEIDDL   60 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444444444444444433

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=84.68  E-value=27  Score=30.59  Aligned_cols=82  Identities=21%  Similarity=0.221  Sum_probs=48.3

Q ss_pred             chhHHHHHHHHHhHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           46 IINEKRLKRVISNRE-----SARRSRMRK-KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        46 ~~e~KR~RR~lkNRe-----SArrSR~RK-k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      ..++|=.+=|+.|-.     ++-...--- |..+++|+..+..+..++......+..+...+..|..|...|+.+|....
T Consensus        88 evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rd  167 (302)
T PF09738_consen   88 EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRD  167 (302)
T ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555666532     222222211 33445555555555555555555566666677777778888888887777


Q ss_pred             HHHHHhcc
Q 041582          120 LVISDLLA  127 (153)
Q Consensus       120 ~~L~d~~~  127 (153)
                      ..|.++..
T Consensus       168 eli~khGl  175 (302)
T PF09738_consen  168 ELIEKHGL  175 (302)
T ss_pred             HHHHHCCe
Confidence            77777764

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=84.50  E-value=9.6  Score=32.94  Aligned_cols=46  Identities=17%  Similarity=0.260  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL  118 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L  118 (153)
                      +..|..++..+..+...++.++..++.+...+..+-..+.++...+
T Consensus       211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l  256 (325)
T PF08317_consen  211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL  256 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444443333333333333333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=84.26  E-value=16  Score=27.80  Aligned_cols=18  Identities=22%  Similarity=0.351  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 041582          105 VQENSQLKEKVSSLQLVI  122 (153)
Q Consensus       105 ~~EN~~Lr~~l~~Lq~~L  122 (153)
                      ..++.+|+..+..|...+
T Consensus        95 ~E~veEL~~Dv~DlK~my  112 (120)
T PF12325_consen   95 SEEVEELRADVQDLKEMY  112 (120)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            345555666655554443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=84.20  E-value=11  Score=25.71  Aligned_cols=45  Identities=24%  Similarity=0.375  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           76 LQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL  120 (153)
Q Consensus        76 LE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~  120 (153)
                      +..++...+..|-.+..++.....++..|..+-..|+.++..++.
T Consensus        16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen   16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            445555566777777777777766666666666666666666553

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=84.02  E-value=5.4  Score=37.81  Aligned_cols=70  Identities=19%  Similarity=0.218  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCC
Q 041582           70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNM  139 (153)
Q Consensus        70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~~n~  139 (153)
                      .+.+++|..+++.+..+...+...+..+......+..+....+.+...+...+.-....+-.|.+.+.|+
T Consensus       327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni  396 (594)
T PF05667_consen  327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI  396 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            4445555666666666666666666655555555555555555555555544443333444445555554

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=84.00  E-value=12  Score=26.03  Aligned_cols=58  Identities=17%  Similarity=0.256  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      |-+.+..|-.+-+.|......+...|..|+.+...+..+...|+.++..+...+..+.
T Consensus        10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~   67 (74)
T PF12329_consen   10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE   67 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666666666666777766666666666666666666655544443

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=83.85  E-value=0.45  Score=42.45  Aligned_cols=49  Identities=27%  Similarity=0.310  Sum_probs=42.5

Q ss_pred             CccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           43 PASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLS   91 (153)
Q Consensus        43 ~~~~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~   91 (153)
                      .....++++.|=..+||.||-++|.|||..+..|+.+...+..+|..|.
T Consensus       278 ~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~  326 (395)
T KOG1414|consen  278 VDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL  326 (395)
T ss_pred             cCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence            3446667775558999999999999999999999999999999998877

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=83.84  E-value=9.9  Score=26.28  Aligned_cols=42  Identities=17%  Similarity=0.314  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           77 QAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL  118 (153)
Q Consensus        77 E~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L  118 (153)
                      +.....|..|+.....++...-..+..|..||..|+.++..+
T Consensus        25 ~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen   25 EIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344445555555555555555555555555555555555443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=83.82  E-value=22  Score=32.66  Aligned_cols=70  Identities=16%  Similarity=0.279  Sum_probs=54.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        50 KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      ++.+-+.++=+.-.++....+.....|+.++..++.++..+..++.........+...+..+...+..|+
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~  107 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE  107 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence            6666666666666666777777888899999999999998888888888877777777777777777664

>PF15058 Speriolin_N: Speriolin N terminus

Probab=83.45  E-value=3.4  Score=34.35  Aligned_cols=38  Identities=24%  Similarity=0.353  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL  118 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L  118 (153)
                      .+.|.++++.|-.||++|++.+..+        .||.+||.-|.+-
T Consensus         7 yeGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksaL~ea   44 (200)
T PF15058_consen    7 YEGLRHQIERLVRENEELKKLVRLI--------RENHELKSALGEA   44 (200)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHh
Confidence            4678889999999999999998755        5888888775433

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=82.82  E-value=34  Score=35.53  Aligned_cols=17  Identities=29%  Similarity=0.495  Sum_probs=9.2

Q ss_pred             CCCC--CCCCC---CCcccccC
Q 041582            7 GRFL--SNSQF---HVPVHIFS   23 (153)
Q Consensus         7 ~~~~--~~~~~---~~~~~~~~   23 (153)
                      ++||  -+.+|   +-|..+|+
T Consensus       380 e~~p~~~~~~f~Gn~LPFIGfT  401 (1317)
T KOG0612|consen  380 ETFPPRIPKAFSGNHLPFIGFT  401 (1317)
T ss_pred             hccCCCCCCCCcCCcCCeeeee
Confidence            4666  33333   45667766

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=82.53  E-value=15  Score=27.95  Aligned_cols=13  Identities=23%  Similarity=0.389  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHH
Q 041582          108 NSQLKEKVSSLQL  120 (153)
Q Consensus       108 N~~Lr~~l~~Lq~  120 (153)
                      ...|+.++..|+.
T Consensus        70 ~~~L~~el~~l~~   82 (120)
T PF12325_consen   70 VEELEQELEELQQ   82 (120)
T ss_pred             HHHHHHHHHHHHH
Confidence            3334444444433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=82.50  E-value=13  Score=35.12  Aligned_cols=62  Identities=24%  Similarity=0.357  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHH
Q 041582           64 RSRMRKKKLIEELQ-------AQVNHVQTVNHQLSEKLISLLE-----------------------------SNHQIVQE  107 (153)
Q Consensus        64 rSR~RKk~~l~eLE-------~kv~~Le~eN~~L~~~i~~L~~-----------------------------~~~~L~~E  107 (153)
                      .+|.|-|+.+.+|-       .+|..|+++|..|...+..|+.                             ....++.+
T Consensus        35 ~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~e  114 (546)
T KOG0977|consen   35 DSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIE  114 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555554       4788889999999888877764                             23345555


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 041582          108 NSQLKEKVSSLQLVISDL  125 (153)
Q Consensus       108 N~~Lr~~l~~Lq~~L~d~  125 (153)
                      -..|+.++..|+..+...
T Consensus       115 i~kl~~e~~elr~~~~~~  132 (546)
T KOG0977|consen  115 ITKLREELKELRKKLEKA  132 (546)
T ss_pred             HHHhHHHHHHHHHHHHHH
Confidence            566666666665555554

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=82.18  E-value=8.2  Score=28.50  Aligned_cols=29  Identities=17%  Similarity=0.367  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           90 LSEKLISLLESNHQIVQENSQLKEKVSSL  118 (153)
Q Consensus        90 L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L  118 (153)
                      +..++..++.++..+..+|..|+.++..|
T Consensus        32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L   60 (105)
T PRK00888         32 VNDQVAAQQQTNAKLKARNDQLFAEIDDL   60 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333344444444444444444444444

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=82.14  E-value=13  Score=30.11  Aligned_cols=54  Identities=20%  Similarity=0.239  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD  124 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d  124 (153)
                      .++++=..+...|...|.-|+.++......+..|..++..|......++..|..
T Consensus        67 ~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~  120 (182)
T PF15035_consen   67 IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ  120 (182)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556666666676677777666666666666666666666666555443

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=81.91  E-value=17  Score=33.75  Aligned_cols=51  Identities=18%  Similarity=0.287  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS  123 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~  123 (153)
                      ++.|+.++..|+.+|..|+..+..|...+..|..+-..+..+|..++-+|.
T Consensus       299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~  349 (502)
T KOG0982|consen  299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI  349 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            455667888999999999999999988888888888777777766654443

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=81.91  E-value=9.4  Score=24.36  Aligned_cols=28  Identities=21%  Similarity=0.175  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           94 LISLLESNHQIVQENSQLKEKVSSLQLV  121 (153)
Q Consensus        94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~  121 (153)
                      ...|...+..|..+|..|..+...|++.
T Consensus         7 y~~LK~~yd~Lk~~~~~L~~E~~~L~ae   34 (45)
T PF02183_consen    7 YDALKASYDSLKAEYDSLKKENEKLRAE   34 (45)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444433

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=81.75  E-value=8.3  Score=30.28  Aligned_cols=38  Identities=18%  Similarity=0.304  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           89 QLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        89 ~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      +|..+...|..+.+.|..||..++.++..+......+.
T Consensus        78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~  115 (135)
T KOG4196|consen   78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ  115 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555556666677889999999999999987666554

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=81.25  E-value=12  Score=32.53  Aligned_cols=22  Identities=14%  Similarity=0.181  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 041582          103 QIVQENSQLKEKVSSLQLVISD  124 (153)
Q Consensus       103 ~L~~EN~~Lr~~l~~Lq~~L~d  124 (153)
                      .+..+...|..++...+..|..
T Consensus       110 ~~~~e~~sl~~q~~~~~~~L~~  131 (314)
T PF04111_consen  110 EFQEERDSLKNQYEYASNQLDR  131 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=81.13  E-value=31  Score=28.84  Aligned_cols=41  Identities=24%  Similarity=0.315  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           61 SARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESN  101 (153)
Q Consensus        61 SArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~  101 (153)
                      +++.--.+-+..+..|..++..|+..|..|...+..++..+
T Consensus       213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~  253 (312)
T PF00038_consen  213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL  253 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence            34444445555667777777777777777777776665433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=80.46  E-value=7  Score=26.04  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLI   95 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~   95 (153)
                      +.+|+.+++.++.+|..|..++.
T Consensus        26 i~~l~~~i~~l~~e~~~L~~ei~   48 (80)
T PF04977_consen   26 IAELQKEIEELKKENEELKEEIE   48 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444433333

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PRK00736 hypothetical protein; Provisional

Probab=80.19  E-value=16  Score=24.98  Aligned_cols=52  Identities=10%  Similarity=0.134  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      .++.++..|+....-+...|..|......-..+...|..++..|..+|.++.
T Consensus         2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00736          2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE   53 (68)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3678899999999988888888877777777777888999999988888765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	153
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	4e-09
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	7e-09
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	2e-07
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	2e-07
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	5e-07
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	2e-06
2wt7_B	90	Transcription factor MAFB; transcription, transcri	1e-05
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	1e-04

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 49.3 bits (118), Expect = 4e-09
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 50  KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENS 109
           KR K +  NR +A RSR ++K  ++ L+ +   + ++N QL  ++  L         E +
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN-------EVA 53

Query: 110 QLKEKV 115
           QLK+ +
Sbjct: 54  QLKQLL 59

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 48.2 bits (115), Expect = 7e-09
 Identities = 19/50 (38%), Positives = 33/50 (66%)

Query: 50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLE 99
          KR  R++ NRE+AR SR +KK+ ++ L+ +V  ++  N  L E+L +L +
Sbjct: 1  KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 16/78 (20%), Positives = 34/78 (43%)

Query: 42  TPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESN 101
           +   II  K+ +R + NR  A   R+++    EEL+ Q   +Q    +L+ +  S+    
Sbjct: 29  SKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLEL 88

Query: 102 HQIVQENSQLKEKVSSLQ 119
             +  +   L+    ++ 
Sbjct: 89  DALRSKYEALQNFARTVA 106

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 44.4 bits (105), Expect = 2e-07
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 49  EKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQEN 108
           EKR  R   N+ +A + R R+++L + LQA+ + ++     L  ++ +LL+       E 
Sbjct: 1   EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLK-------EK 53

Query: 109 SQLKEKVSS 117
            +L+  +++
Sbjct: 54  EKLEFILAA 62

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 43.5 bits (103), Expect = 5e-07
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 50  KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENS 109
           K  ++ + NR +A +SR RK + I  L+ +V  ++  N +L+     L E       + +
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE-------QVA 53

Query: 110 QLKEKV 115
           QLK+KV
Sbjct: 54  QLKQKV 59

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISL 97
          K+LK++  N+ +A R R +K+   E L  +   ++  N  L E+  SL
Sbjct: 2  KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSL 49

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 13/71 (18%), Positives = 30/71 (42%)

Query: 42  TPASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESN 101
           T   +I  K+ +R + NR  A+  R ++ +    L+ +   +     QL +++  L    
Sbjct: 19  TKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARER 78

Query: 102 HQIVQENSQLK 112
                ++ +L 
Sbjct: 79  DAYKVKSEKLA 89

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 17/65 (26%), Positives = 31/65 (47%)

Query: 48  NEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQE 107
            E   KR   NR + R  R RK+  ++ L+ QV  ++ ++   + +   L +   Q+ +E
Sbjct: 6   QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65

Query: 108 NSQLK 112
              LK
Sbjct: 66  LRILK 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	153
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.57
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.42
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.38
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.3
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.28
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	99.11
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	99.08
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.69
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.68
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.3
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.28
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.58
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	96.88
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	96.59
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	95.77
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.46
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.44
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	94.96
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	94.07
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	93.75
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	93.49
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	93.41
3m48_A	33	General control protein GCN4; leucine zipper, synt	93.4
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	93.0
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	92.81
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.63
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	92.43
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	92.21
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	91.75
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	91.75
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	91.56
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	91.35
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	91.05
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	90.88
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	90.54
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	90.48
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	90.46
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	90.16
2bni_A	34	General control protein GCN4; four helix bundle, a	90.02
1uo4_A	34	General control protein GCN4; four helix bundle, c	90.01
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	89.99
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	89.95
2hy6_A	34	General control protein GCN4; protein design, para	89.83
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	89.56
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	89.35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	89.27
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	89.04
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	88.99
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	88.68
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	88.58
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	87.93
3m48_A	33	General control protein GCN4; leucine zipper, synt	87.75
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	87.69
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	87.38
1fmh_A	33	General control protein GCN4; coiled coil, leucine	87.33
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	87.1
1gk6_A	59	Vimentin; intermediate filament, dimer, parallel c	86.97
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	86.42
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	86.13
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	85.83
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	85.53
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	85.4
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	85.0
3bas_A	89	Myosin heavy chain, striated muscle/general contro	84.88
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	84.8
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	84.78
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	84.42
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	84.33
3swf_A	74	CGMP-gated cation channel alpha-1; coiled-coil, as	84.3
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	84.0
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	83.78
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	83.69
1uii_A	83	Geminin; human, DNA replication, cell cycle; 2.00A	83.57
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	83.42
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	83.32
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	83.32
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	83.06
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	83.05
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	82.85
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	82.53
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	82.47
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	82.3
2r2v_A	34	GCN4 leucine zipper; coiled coils, anti-parallel t	82.2
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	81.94
2bni_A	34	General control protein GCN4; four helix bundle, a	81.68
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	81.53
3u06_A	412	Protein claret segregational; motor domain, stalk	81.39
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	81.29
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	81.06
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	81.03
1p9i_A	31	Cortexillin I/GCN4 hybrid peptide; coiled-coil, un	80.69
2xv5_A	74	Lamin-A/C; structural protein, intermediate filame	80.49
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	80.24
1uo4_A	34	General control protein GCN4; four helix bundle, c	80.04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.57  E-value=4e-15  Score=98.26  Aligned_cols=51  Identities=37%  Similarity=0.528  Sum_probs=47.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLES  100 (153)
Q Consensus        50 KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~  100 (153)
                      |+.+|+++||+||++||.||++|+++||.+|..|+.+|..|..++..|+..
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~   51 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL   51 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999999999999998887654

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.42  E-value=9.2e-13  Score=88.59  Aligned_cols=56  Identities=27%  Similarity=0.455  Sum_probs=49.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           49 EKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQI  104 (153)
Q Consensus        49 ~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L  104 (153)
                      +||.+|+.+||+||++||.||++++.+|+.+|..|+.+|..|..++..|+.+...|
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L   56 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL   56 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999987665544443

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.38  E-value=2.5e-12  Score=85.69  Aligned_cols=55  Identities=29%  Similarity=0.407  Sum_probs=48.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQI  104 (153)
Q Consensus        50 KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L  104 (153)
                      ||.+|+.+||+||++||.||++|+.+|+.+|..|+.+|..|..++..|+.++..|
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L   55 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL   55 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999999999999999988765444433

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.30  E-value=6.9e-12  Score=83.88  Aligned_cols=53  Identities=28%  Similarity=0.337  Sum_probs=47.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNH  102 (153)
Q Consensus        50 KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~  102 (153)
                      |+.+|..+||+||++||.||++++.+|+.+|..|+.+|..|..++..|..++.
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~   53 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVA   53 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999887654433

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.28  E-value=8.1e-12  Score=84.37  Aligned_cols=54  Identities=26%  Similarity=0.346  Sum_probs=43.2

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           48 NEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESN  101 (153)
Q Consensus        48 e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~  101 (153)
                      +++..++..+||+||++||.||++|+.+|+.+|..|+.+|..|..++..|...+
T Consensus         7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A            7 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556699999999999999999999999999999999888888776543

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=99.11  E-value=1.4e-10  Score=80.10  Aligned_cols=62  Identities=26%  Similarity=0.271  Sum_probs=52.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           51 RLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLK  112 (153)
Q Consensus        51 R~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr  112 (153)
                      ..||+..||.|++.+|.||.+|+.+||.+|..|+..+..|..++..|..++..|..||..|+
T Consensus         9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr   70 (70)
T 1gd2_E            9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK   70 (70)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            35899999999999999999999999999999999998877777777777777777666553

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=99.08  E-value=3.4e-10  Score=76.17  Aligned_cols=51  Identities=29%  Similarity=0.415  Sum_probs=41.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           50 KRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLES  100 (153)
Q Consensus        50 KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~  100 (153)
                      |+.+++.+||.||+|+|.||+++..+|+.++..|+.+|..|..++..|+.+
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E   52 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKE   52 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678899999999999999999999999999999999999999998766543

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.69  E-value=1.5e-07  Score=67.27  Aligned_cols=54  Identities=24%  Similarity=0.185  Sum_probs=47.0

Q ss_pred             ccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           44 ASIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISL   97 (153)
Q Consensus        44 ~~~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L   97 (153)
                      .+..|++-..|..+|.+||++||.+++....+++.++..|+.+|..|..+|..|
T Consensus         9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L   62 (87)
T 1hjb_A            9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQL   62 (87)
T ss_dssp             -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566667778999999999999999999999999999999999999988753

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.68  E-value=1.6e-07  Score=65.87  Aligned_cols=56  Identities=23%  Similarity=0.169  Sum_probs=47.7

Q ss_pred             cchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           45 SIINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLES  100 (153)
Q Consensus        45 ~~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~  100 (153)
                      +..|+.-..|..+|.+||++||.+++....+++.++..|+.+|..|..+|..|..+
T Consensus        10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E   65 (78)
T 1gu4_A           10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE   65 (78)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555668999999999999999999999999999999999999998865433

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.30  E-value=6.4e-06  Score=59.21  Aligned_cols=53  Identities=21%  Similarity=0.315  Sum_probs=43.1

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           46 IINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLISLL   98 (153)
Q Consensus        46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~   98 (153)
                      ...-|-.||.++||.+|+-+|.||.....+||.++..|..+...|..++..+.
T Consensus        23 v~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~   75 (90)
T 2wt7_B           23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA   75 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667888999999999999999999999999888877777666665555443

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.28  E-value=1.7e-08  Score=74.71  Aligned_cols=51  Identities=29%  Similarity=0.350  Sum_probs=40.6

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           46 IINEKRLKRVISNRESARRSRMRKKKLIEELQAQVNHVQTVNHQLSEKLIS   96 (153)
Q Consensus        46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~   96 (153)
                      ..+-|..||.++||.+|+.||.||.+..++||.++..|..+...|..++..
T Consensus        33 ~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~   83 (107)
T 3a5t_A           33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENAS   83 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445589999999999999999999999999997777666665555444443

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.58  E-value=0.00024  Score=44.40  Aligned_cols=39  Identities=28%  Similarity=0.481  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           70 KKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV  115 (153)
Q Consensus        70 k~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l  115 (153)
                      |+|+.+||.++.+|+..|++|..++..|       .+||..||+-+
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstL-------q~EN~mLRqvl   40 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTL-------QNENQMLRHIL   40 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHh
Confidence            6899999999999999999988888876       47777777654

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=96.88  E-value=0.0064  Score=42.81  Aligned_cols=56  Identities=23%  Similarity=0.360  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPL  129 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~  129 (153)
                      .-|..+++.|+.+|..|..++..+......|..||..|+++....+.+|..+++-|
T Consensus        23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~   78 (81)
T 2jee_A           23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34555666666677777777777766677799999999999999998888887653

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=96.59  E-value=0.00089  Score=48.13  Aligned_cols=33  Identities=18%  Similarity=0.257  Sum_probs=27.4

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041582           46 IINEKRLKRVISNRESARRSRMRKKKLIEELQA   78 (153)
Q Consensus        46 ~~e~KR~RR~lkNReSArrSR~RKk~~l~eLE~   78 (153)
                      ....|..||..+||.+|+++|+||.+..+.|+.
T Consensus        58 l~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           58 RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            345678899999999999999999999888763

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=95.77  E-value=0.054  Score=36.23  Aligned_cols=41  Identities=32%  Similarity=0.461  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKE  113 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~  113 (153)
                      +..-|.+|.+|..-|..|..++..++...+.|..||..|+.
T Consensus        22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            45568899999999999999999999999999999999973

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.46  E-value=0.072  Score=37.39  Aligned_cols=48  Identities=23%  Similarity=0.301  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL  118 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L  118 (153)
                      +-++.||.+|..+-....-|..++..|.+++..|..+|..++.....|
T Consensus         6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L   53 (81)
T 2jee_A            6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREEL   53 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            457889999999999888888888888888888888888855543333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.44  E-value=0.15  Score=38.52  Aligned_cols=59  Identities=20%  Similarity=0.250  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           68 RKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        68 RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      +.+...+.|+.+++.+..+...|..++..++.++..+..++..|+.++..|+..+..+.
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456788888888888888888888888888888888888888888888877666553

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=94.96  E-value=0.2  Score=32.42  Aligned_cols=48  Identities=25%  Similarity=0.270  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL  120 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~  120 (153)
                      .+.|-.+|+.|+.||..|+.++..=..+...|+.|-.-+++-+..|+.
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~   52 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG   52 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence            478889999999999999999999999999999999888887776653

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=94.07  E-value=0.17  Score=34.70  Aligned_cols=58  Identities=12%  Similarity=0.216  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRG  131 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~  131 (153)
                      .++..+++.++.+|..|..+|..|+.....-..+-..++.++..+...|...+.-|+.
T Consensus         3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~e   60 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTE   60 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3567788888888888888888888888877777777877777777666555544433

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=93.75  E-value=0.36  Score=35.16  Aligned_cols=45  Identities=20%  Similarity=0.179  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           74 EELQAQVNHVQTVNHQLSE-------KLISLLESNHQIVQENSQLKEKVSSL  118 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~-------~i~~L~~~~~~L~~EN~~Lr~~l~~L  118 (153)
                      -+||.++..++.+|..|..       ++..|..+...|..||..|+.+-...
T Consensus        40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~   91 (104)
T 3s9g_A           40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELH   91 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4688888888888888777       56666777777777777776665444

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=93.49  E-value=0.41  Score=29.96  Aligned_cols=44  Identities=20%  Similarity=0.331  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV  115 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l  115 (153)
                      .+..||.+|..|+.+|..|..+.-.-..-..-|+.|-.-|+.++
T Consensus         4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki   47 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI   47 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence            46789999999999999998887555555556666666666554

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=93.41  E-value=0.11  Score=36.20  Aligned_cols=57  Identities=23%  Similarity=0.262  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLR  130 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~  130 (153)
                      +++..+++.++.+|..|..+|..|+.....-..+-..++.++..+...|...+.-|+
T Consensus         9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~   65 (79)
T 3cvf_A            9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELS   65 (79)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            456677888888888888888888888877777777777777777666655544433

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=93.40  E-value=0.1  Score=30.92  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLL   98 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~   98 (153)
                      |..||.+|+.|-.+|..|..++..|.
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk   27 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLK   27 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            55677777777777777776666553

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=93.00  E-value=0.15  Score=30.33  Aligned_cols=27  Identities=19%  Similarity=0.247  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLL   98 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~   98 (153)
                      +|..||.+|+.|-.+|..|..++..|+
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk   28 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLK   28 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            456677777766666666666555443

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=92.81  E-value=0.23  Score=29.85  Aligned_cols=28  Identities=21%  Similarity=0.366  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLLE   99 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~   99 (153)
                      +|..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~   29 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKK   29 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4678888888888888888777776654

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.63  E-value=1.9  Score=32.42  Aligned_cols=58  Identities=12%  Similarity=0.074  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041582           68 RKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDL  125 (153)
Q Consensus        68 RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~  125 (153)
                      .=...+++++.++..|..+...+..++..+..+...|..++..|..++..|...|.+.
T Consensus        79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~  136 (138)
T 3hnw_A           79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDS  136 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3345666677777777777777777777777777777777777777777777766553

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=92.43  E-value=1  Score=31.20  Aligned_cols=63  Identities=22%  Similarity=0.201  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Q 041582           74 EELQAQVNHVQTVNHQLSEKL-------ISLLESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVN  136 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i-------~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~  136 (153)
                      .++-.+|+.|-.||.+|...-       ..|-.+...|.+|+..|+.++.+++.....+...+..+|+..
T Consensus         5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl   74 (77)
T 2w83_C            5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL   74 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888888888876653       345567888999999999999999988888888877777653

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=92.21  E-value=0.85  Score=29.05  Aligned_cols=38  Identities=26%  Similarity=0.251  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           77 QAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEK  114 (153)
Q Consensus        77 E~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~  114 (153)
                      +.++..|..-|..|..++..|+..+..++.|+..|+.-
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L   40 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKL   40 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            56788899999999999999988888888777666543

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=91.75  E-value=0.25  Score=29.70  Aligned_cols=28  Identities=18%  Similarity=0.356  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLLE   99 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~   99 (153)
                      +|..||.+|+.|..+|..|..++..|+.
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~   29 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEK   29 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4677888888888888888887776654

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=91.75  E-value=1.3  Score=29.16  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=18.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHH
Q 041582           53 KRVISNRESARRSRMRKKKLIEELQ   77 (153)
Q Consensus        53 RR~lkNReSArrSR~RKk~~l~eLE   77 (153)
                      +..-+||.+++++|.|=+..++-..
T Consensus         4 ~kryknr~asrk~rakfkn~lqh~r   28 (63)
T 2c9l_Y            4 IKRYKNRVAARKSRAKFKQLLQHYR   28 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456899999999998777655443

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=91.56  E-value=0.29  Score=29.07  Aligned_cols=27  Identities=0%  Similarity=0.149  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLL   98 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~   98 (153)
                      +|..||.+|+.|-.+|..|..++..|+
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk   28 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIX   28 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            456777777777777766666665543

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=91.35  E-value=1.6  Score=31.46  Aligned_cols=29  Identities=17%  Similarity=0.187  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLLES  100 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~  100 (153)
                      .+..|..+++.|+.||..|..++..|+-+
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~   41 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQ   41 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888888888888888777654

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=91.05  E-value=0.78  Score=30.13  Aligned_cols=37  Identities=27%  Similarity=0.254  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           77 QAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKE  113 (153)
Q Consensus        77 E~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~  113 (153)
                      |.++..|...|-.|..++..|+.+|...+.|+..|..
T Consensus        10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~   46 (58)
T 3a2a_A           10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK   46 (58)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677788888888888888887777777776665544

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.88  E-value=2.7  Score=30.26  Aligned_cols=46  Identities=17%  Similarity=0.250  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      ..|+.++.....+...|...+..-.......+.++..+..+|..|-
T Consensus        15 ~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT   60 (97)
T 2eqb_B           15 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT   60 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444443333333344444444444444443

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=90.54  E-value=0.42  Score=28.21  Aligned_cols=26  Identities=4%  Similarity=0.217  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLL   98 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~   98 (153)
                      |..||.+|+.|-.+|..|..++..|+
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk   27 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIK   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45667777766666666666655443

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=90.48  E-value=0.92  Score=31.12  Aligned_cols=49  Identities=16%  Similarity=0.182  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      .++.+||.++..++.-...|...+..-+.....|..+.+.|..++..+.
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~   62 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   62 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4677888888888877777777777766666666666666666665554

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=90.46  E-value=1.7  Score=27.80  Aligned_cols=37  Identities=22%  Similarity=0.280  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           82 HVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL  118 (153)
Q Consensus        82 ~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L  118 (153)
                      .|+.++..|..++..|...+.....+-..|++++..|
T Consensus        13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L   49 (51)
T 3m91_A           13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL   49 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444444444444333344444444455554443

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=90.16  E-value=0.48  Score=27.99  Aligned_cols=26  Identities=4%  Similarity=0.112  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLL   98 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~   98 (153)
                      |..||.+|+.|-.++..|..++..|+
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~   27 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNT   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            56788888888777777777776554

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=90.02  E-value=0.45  Score=28.30  Aligned_cols=27  Identities=7%  Similarity=0.367  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLL   98 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~   98 (153)
                      +|..||.+|+.|-.+|..|..++..|+
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk   28 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIK   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence            456677777777777666666665543

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=90.01  E-value=0.45  Score=28.29  Aligned_cols=27  Identities=4%  Similarity=0.162  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLL   98 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~   98 (153)
                      +|..||.+|+.|-.+|..|..++..|.
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk   28 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIK   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            356677777777777777666666543

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=89.99  E-value=1.4  Score=28.75  Aligned_cols=8  Identities=13%  Similarity=0.372  Sum_probs=2.8

Q ss_pred             HHHHHHHH
Q 041582          112 KEKVSSLQ  119 (153)
Q Consensus       112 r~~l~~Lq  119 (153)
                      +.++..|.
T Consensus        50 ~~E~~~Lk   57 (63)
T 1ci6_A           50 AKEIQYLK   57 (63)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=89.95  E-value=0.024  Score=40.64  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=20.7

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHH
Q 041582           48 NEKRLKRVISNRESARRSRMRKKK   71 (153)
Q Consensus        48 e~KR~RR~lkNReSArrSR~RKk~   71 (153)
                      .-+..||..+||++|+.+|+||..
T Consensus        64 lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           64 LVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHH
Confidence            346778999999999999999864

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=89.83  E-value=0.47  Score=28.17  Aligned_cols=27  Identities=19%  Similarity=0.336  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLL   98 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~   98 (153)
                      +|..||.+|+.|-.+|..|..++..|+
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~   28 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLA   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            456777788777777777777766554

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=89.56  E-value=0.67  Score=27.51  Aligned_cols=30  Identities=17%  Similarity=0.390  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           94 LISLLESNHQIVQENSQLKEKVSSLQLVIS  123 (153)
Q Consensus        94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~  123 (153)
                      +..|+.+...|..+|..|..++..|+..|.
T Consensus         3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll~   32 (34)
T 2oxj_A            3 MXQLEXKVXELLXKNXHLEXEVXRLKXLVX   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            455667777888888888888888887764

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=89.35  E-value=1  Score=30.49  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           88 HQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVIS  123 (153)
Q Consensus        88 ~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~  123 (153)
                      ..|..++..|...+..|..||..|+.++..|+..+.
T Consensus        32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~   67 (70)
T 1gd2_E           32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR   67 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555566677777777777777766554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.27  E-value=3.8  Score=35.56  Aligned_cols=40  Identities=13%  Similarity=0.096  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKE  113 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~  113 (153)
                      ..++.+.+.++.++..+.+++...++++..+..|...|+.
T Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~  551 (597)
T 3oja_B          512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK  551 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence            3334444444444444444444444444444444443333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=89.04  E-value=1.4  Score=35.05  Aligned_cols=42  Identities=10%  Similarity=0.221  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL  120 (153)
Q Consensus        79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~  120 (153)
                      ++..|...+..|...|..|...++.|+...+.+..-+..+..
T Consensus        96 el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~  137 (189)
T 2v71_A           96 DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQ  137 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHH
Confidence            333333333333333333333333333333333333333333

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=88.99  E-value=1  Score=28.87  Aligned_cols=31  Identities=29%  Similarity=0.423  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           78 AQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV  115 (153)
Q Consensus        78 ~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l  115 (153)
                      ..|+.|+.||..|+.++.       .|..++.+|+.++
T Consensus        19 ~d~eaLk~E~~eLk~k~~-------~L~~~~~el~~~l   49 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYE-------AIVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence            345555555555555544       4445555555544

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=88.68  E-value=0.7  Score=30.42  Aligned_cols=33  Identities=15%  Similarity=0.370  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           91 SEKLISLLESNHQIVQENSQLKEKVSSLQLVIS  123 (153)
Q Consensus        91 ~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~  123 (153)
                      ...+..|+.+...|..+|..|+.++..|+..|.
T Consensus        29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345677777778888899999999988887664

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=88.58  E-value=3.6  Score=28.52  Aligned_cols=41  Identities=20%  Similarity=0.189  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKE  113 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~  113 (153)
                      +-+|-.++..|+.|...|+..++.+.-+...+....+.+=.
T Consensus        22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~   62 (83)
T 2xdj_A           22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL   62 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677777777777777776666555555554444433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=87.93  E-value=7.5  Score=37.70  Aligned_cols=21  Identities=19%  Similarity=0.300  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 041582           99 ESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        99 ~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      ++...|..||..|++++..|.
T Consensus      1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334456667777777666665

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=87.75  E-value=0.67  Score=27.37  Aligned_cols=29  Identities=17%  Similarity=0.324  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           95 ISLLESNHQIVQENSQLKEKVSSLQLVIS  123 (153)
Q Consensus        95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~  123 (153)
                      ..|+.+...|..+|..|..++..|+..|.
T Consensus         3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~   31 (33)
T 3m48_A            3 AQLEAKVEELLSKNWNLENEVARLKKLVG   31 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            45667777888899999999988887764

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=87.69  E-value=5.5  Score=27.85  Aligned_cols=41  Identities=22%  Similarity=0.385  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041582           88 HQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLAP  128 (153)
Q Consensus        88 ~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~  128 (153)
                      ..+..++..|+.++..|..+...|+.++..|...|.++-.+
T Consensus        39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~   79 (87)
T 1hjb_A           39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP   79 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence            34555555555555555555555555555555555554433

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=87.38  E-value=2.2  Score=36.81  Aligned_cols=54  Identities=11%  Similarity=0.082  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLLA  127 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~  127 (153)
                      +.|+.++..|+.+...|...+..++..+..+..+-..-......|-..|.++.+
T Consensus         6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg   59 (403)
T 4etp_A            6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG   59 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            344444444444444444444444444444333333333333334444555443

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=87.33  E-value=1.3  Score=25.69  Aligned_cols=28  Identities=21%  Similarity=0.370  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLES  100 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~  100 (153)
                      +..||.+|.+.+.+|-+|..++..|+..
T Consensus         3 vaqlekevaqaeaenyqleqevaqlehe   30 (33)
T 1fmh_A            3 VAQLEKEVAQAEAENYQLEQEVAQLEHE   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            5678888888888888888888777543

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=87.10  E-value=4.3  Score=25.97  Aligned_cols=29  Identities=24%  Similarity=0.290  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           94 LISLLESNHQIVQENSQLKEKVSSLQLVI  122 (153)
Q Consensus        94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L  122 (153)
                      +..|+.....|..+|..|+.++..|+..+
T Consensus        24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~   52 (61)
T 1t2k_D           24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV   52 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555555555554433

>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1

Probab=86.97  E-value=3.3  Score=26.69  Aligned_cols=52  Identities=12%  Similarity=0.263  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD  124 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d  124 (153)
                      +.++...+..|+.+...++..+......++.|++=.-.|..++...+..|..
T Consensus         2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLEg   53 (59)
T 1gk6_A            2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEG   53 (59)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence            3467778888888888888888888889999999999999999999988763

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=86.42  E-value=1.4  Score=26.51  Aligned_cols=30  Identities=20%  Similarity=0.232  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           84 QTVNHQLSEKLISLLESNHQIVQENSQLKE  113 (153)
Q Consensus        84 e~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~  113 (153)
                      -.||.+|...++.-.++...|..||.+|.+
T Consensus         6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E   35 (37)
T 1t6f_A            6 LKENEKLHKEIEQKDNEIARLKKENKELAE   35 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence            368999999999999999999999998864

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=86.13  E-value=1.7  Score=27.74  Aligned_cols=16  Identities=25%  Similarity=0.353  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q 041582          104 IVQENSQLKEKVSSLQ  119 (153)
Q Consensus       104 L~~EN~~Lr~~l~~Lq  119 (153)
                      |..||..|++++..|.
T Consensus        24 Lk~E~~eLk~k~~~L~   39 (53)
T 2yy0_A           24 LRLELAEMKEKYEAIV   39 (53)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=85.83  E-value=0.75  Score=29.48  Aligned_cols=31  Identities=23%  Similarity=0.220  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           92 EKLISLLESNHQIVQENSQLKEKVSSLQLVI  122 (153)
Q Consensus        92 ~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L  122 (153)
                      ..+..|+.+...|..||..|+.++..|+..+
T Consensus        22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A           22 EYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4467777778888999999999998887654

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=85.53  E-value=4.8  Score=29.98  Aligned_cols=53  Identities=19%  Similarity=0.197  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      +.|+.+...-+....+|..+|..|.++++...+|-.+|+.....|..++.+..
T Consensus        60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~  112 (121)
T 3mq7_A           60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK  112 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence            44555444445556667777777777777777777777777777777766655

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=85.40  E-value=1.3  Score=29.97  Aligned_cols=12  Identities=25%  Similarity=0.540  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHH
Q 041582          104 IVQENSQLKEKV  115 (153)
Q Consensus       104 L~~EN~~Lr~~l  115 (153)
                      |..+|..|+.++
T Consensus        66 L~~~~~~L~~~l   77 (83)
T 1nkp_B           66 LKRQNALLEQQV   77 (83)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333444444444

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=85.00  E-value=1.8  Score=25.64  Aligned_cols=30  Identities=3%  Similarity=0.141  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           94 LISLLESNHQIVQENSQLKEKVSSLQLVIS  123 (153)
Q Consensus        94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~  123 (153)
                      +..|+.+...|..+|..|..++..|+..|.
T Consensus         3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~   32 (34)
T 3c3f_A            3 MXQIEXKLEXILSXLYHXENEXARIXKLLX   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            445666777788888888888888887764

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=84.88  E-value=7.6  Score=26.75  Aligned_cols=56  Identities=16%  Similarity=0.312  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD  124 (153)
Q Consensus        69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d  124 (153)
                      -.....+|+.+...|..+...|..++..+...+..|......|..++..|..+|.+
T Consensus        33 ~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~e   88 (89)
T 3bas_A           33 TERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVGE   88 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33445678888888999988988888889999999999999999999999888754

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=84.80  E-value=2.8  Score=28.62  Aligned_cols=27  Identities=11%  Similarity=-0.027  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           93 KLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        93 ~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      .|..|+........+.+.|+.++..++
T Consensus        41 ~I~eLEk~L~ekd~eI~~LqseLDKfr   67 (72)
T 3nmd_A           41 LIDELELELDQKDELIQMLQNELDKYR   67 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344444444444444445555554444

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=84.78  E-value=2.6  Score=24.81  Aligned_cols=29  Identities=3%  Similarity=0.168  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           95 ISLLESNHQIVQENSQLKEKVSSLQLVIS  123 (153)
Q Consensus        95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~  123 (153)
                      ..|+.+...|..+|..|..++..|+..|.
T Consensus         3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL~   31 (33)
T 3c3g_A            3 KXIEXKLXEIXSKXYHXENXLARIKXLLX   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            45666777788888888888888887764

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=84.42  E-value=1.6  Score=34.81  Aligned_cols=45  Identities=24%  Similarity=0.248  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV  115 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l  115 (153)
                      ++++.-..-|..|..||..|..++.....+...|..+-..|+.++
T Consensus        13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~   57 (190)
T 4emc_A           13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV   57 (190)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            334444445666666666666666555555555555544444444

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=84.33  E-value=5.7  Score=24.86  Aligned_cols=43  Identities=19%  Similarity=0.357  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           75 ELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQL  120 (153)
Q Consensus        75 eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~  120 (153)
                      ++|.+|+.|+.-...|..+++.|..++.+   -...|++++..|..
T Consensus         2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE~   44 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLES   44 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence            56777777776666666665555444333   33457777766643

>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}

Probab=84.30  E-value=5.4  Score=27.37  Aligned_cols=50  Identities=14%  Similarity=0.329  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      ++||.+|..|+.-...|..++..|..++.+   -...|++++..|...+....
T Consensus         3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~s---sQ~KLKqRit~LE~~~~~~~   52 (74)
T 3swf_A            3 MGLEEKVTRMESSVDLLQTRFARILAEYES---MQQKLKQRLTKVEKFLKPLI   52 (74)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccC
Confidence            467777877777777666666666544443   34568999999987777655

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=84.00  E-value=0.69  Score=32.06  Aligned_cols=30  Identities=33%  Similarity=0.388  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           86 VNHQLSEKLISLLESNHQIVQENSQLKEKV  115 (153)
Q Consensus        86 eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l  115 (153)
                      |..-|+.+|.+|.+++..|+.||..||.-+
T Consensus        16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~a   45 (78)
T 1dip_A           16 EVEILKEQIRELVEKNSQLERENTLLKTLA   45 (78)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            345577777778888888888888888653

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=83.78  E-value=6.6  Score=25.18  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           93 KLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        93 ~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      .+..|+.....|..+|..|+.++..|+..+..+.
T Consensus        23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk   56 (62)
T 1jnm_A           23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK   56 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666777777777777766655443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=83.69  E-value=7.9  Score=26.04  Aligned_cols=59  Identities=15%  Similarity=0.122  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           68 RKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        68 RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      .-...++.++.++...+.....+...+..|+.++..|+.+-..+..++...+..|....
T Consensus        17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae   75 (81)
T 1ic2_A           17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677777777777777778888888888888888888888888877777776543

>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1

Probab=83.57  E-value=5.6  Score=27.86  Aligned_cols=37  Identities=19%  Similarity=0.215  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      --.||..|...|..+.+....|..+|..|+.-+..++
T Consensus        44 aL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q   80 (83)
T 1uii_A           44 ALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ   80 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457888888888888888888888888877665554

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=83.42  E-value=4.3  Score=28.17  Aligned_cols=37  Identities=19%  Similarity=0.199  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      --.+|..|..+|..+.+....|..||..|+.-+...+
T Consensus        32 aL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~   68 (79)
T 2zxx_A           32 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ   68 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3458999999999999999999999999877665554

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=83.32  E-value=8.7  Score=28.57  Aligned_cols=37  Identities=19%  Similarity=0.251  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           79 QVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV  115 (153)
Q Consensus        79 kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l  115 (153)
                      +|+.|+.|+..|..++.....+...|..+|..|..++
T Consensus        72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~  108 (121)
T 3mq7_A           72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI  108 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence            3445555555555555555555555555555555544

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=83.32  E-value=11  Score=27.40  Aligned_cols=52  Identities=6%  Similarity=0.056  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD  124 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d  124 (153)
                      ++-|...++.++.....+..+.......+..+.-....|..++..|+..|.+
T Consensus        32 VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q   83 (103)
T 4h22_A           32 VDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ   83 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666666666666666666666666677777777666654

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=83.06  E-value=10  Score=26.72  Aligned_cols=54  Identities=13%  Similarity=0.152  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           69 KKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVI  122 (153)
Q Consensus        69 Kk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L  122 (153)
                      -....+.++.++..++..+..+..++..|+.++..+..+-..+..+|......|
T Consensus        21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL   74 (101)
T 3u1c_A           21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL   74 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566666666666666666666666666655555555555554444333

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=83.05  E-value=4.7  Score=27.49  Aligned_cols=53  Identities=17%  Similarity=0.125  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISDLL  126 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~  126 (153)
                      .+|+.++..|+...+-+...|..|......-..+...|..++..|...|.++.
T Consensus        10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~   62 (78)
T 3efg_A           10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   62 (78)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46788888888888888888887777666666676777777777766666554

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=82.85  E-value=9.9  Score=26.52  Aligned_cols=30  Identities=13%  Similarity=0.144  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           95 ISLLESNHQIVQENSQLKEKVSSLQLVISD  124 (153)
Q Consensus        95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d  124 (153)
                      ..|+.+...+..++..|..++..|+..+.+
T Consensus        59 ~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~   88 (93)
T 3s4r_A           59 RELRRQVDQLTNDKARVEVERDNLAEDIMR   88 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555555555554444

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=82.53  E-value=2.2  Score=35.31  Aligned_cols=39  Identities=31%  Similarity=0.441  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSL  118 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~L  118 (153)
                      +.+|+.++..|...|..|...+.       .+..|...|++++..|
T Consensus        56 l~eL~~ql~~L~arNe~L~~~Lk-------~ar~El~~LkeElerL   94 (251)
T 3m9b_A           56 IHQLEARIDSLAARNSKLMETLK-------EARQQLLALREEVDRL   94 (251)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence            44455555555555544444443       3334444444444444

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=82.47  E-value=3.1  Score=28.31  Aligned_cols=25  Identities=16%  Similarity=0.068  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKLI   95 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i~   95 (153)
                      +|+..|+.+...+..+...|..++.
T Consensus        47 ~yI~~L~~~~~~l~~e~~~L~~e~~   71 (80)
T 1nlw_A           47 LHIKKLEDSDRKAVHQIDQLQREQR   71 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555544444444443333

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=82.30  E-value=2.8  Score=25.96  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           71 KLIEELQAQVNHVQTVNHQLSEKL   94 (153)
Q Consensus        71 ~~l~eLE~kv~~Le~eN~~L~~~i   94 (153)
                      ....+||.+|..|+.||.-|++-+
T Consensus        17 ~~naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A           17 NKNSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHh
Confidence            345788888888888888777654

>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1

Probab=82.20  E-value=2.3  Score=25.22  Aligned_cols=25  Identities=8%  Similarity=0.210  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISL   97 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L   97 (153)
                      +..||.+|+.|-.++..|..++..|
T Consensus         3 MnQledKvEel~~~~~~l~nEv~Rl   27 (34)
T 2r2v_A            3 LKQVADKLEEVASKLYHNANELARV   27 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHH
Confidence            5566667766666666665555544

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=81.94  E-value=3.3  Score=24.82  Aligned_cols=30  Identities=20%  Similarity=0.176  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           95 ISLLESNHQIVQENSQLKEKVSSLQLVISD  124 (153)
Q Consensus        95 ~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d  124 (153)
                      ..|+.+...|..+|..|..++..|+..|..
T Consensus         4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~   33 (36)
T 1kd8_B            4 KQLKAKVEELKSKLWHLKNKVARLKKKNAE   33 (36)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            344555556666777777777777766653

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=81.68  E-value=1.8  Score=25.69  Aligned_cols=30  Identities=3%  Similarity=0.262  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           94 LISLLESNHQIVQENSQLKEKVSSLQLVIS  123 (153)
Q Consensus        94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~  123 (153)
                      +..|+.+...|..+|..|..++..|+..|.
T Consensus         3 MnQLEdKvEeLl~~~~~L~~EV~RLk~lL~   32 (34)
T 2bni_A            3 MKQIEDKLEEILSKGHHICNELARIKKLLG   32 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence            345666677778888888888888877664

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=81.53  E-value=13  Score=27.16  Aligned_cols=69  Identities=16%  Similarity=0.228  Sum_probs=50.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 041582           55 VISNRESARRSRMRKKKLIEELQAQVNHVQT---VNHQLSEKLISLLESNH-------QIVQENSQLKEKVSSLQLVIS  123 (153)
Q Consensus        55 ~lkNReSArrSR~RKk~~l~eLE~kv~~Le~---eN~~L~~~i~~L~~~~~-------~L~~EN~~Lr~~l~~Lq~~L~  123 (153)
                      +..|-.+|...=..|+..+++|..++..+..   ...-|..++......+.       .+..|...|..++..|+.++.
T Consensus        29 L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~  107 (110)
T 2v4h_A           29 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN  107 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence            4556677778888888999999988888777   56667777777666544       466677777777777776654

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=81.39  E-value=7.7  Score=33.63  Aligned_cols=23  Identities=17%  Similarity=0.147  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 041582           75 ELQAQVNHVQTVNHQLSEKLISL   97 (153)
Q Consensus        75 eLE~kv~~Le~eN~~L~~~i~~L   97 (153)
                      .|+.++..|+.+...|..++..+
T Consensus         7 ~l~~el~~~~~~~~~l~~~~~~~   29 (412)
T 3u06_A            7 ALSTEVVHLRQRTEELLRCNEQQ   29 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444443333

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=81.29  E-value=6.1  Score=27.67  Aligned_cols=37  Identities=19%  Similarity=0.199  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           83 VQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        83 Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      --.||..|...+..+..+...|..+|..|+.-....+
T Consensus        36 aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q   72 (83)
T 1wlq_A           36 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ   72 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3458888999999999999999999988887655443

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=81.06  E-value=3.4  Score=28.61  Aligned_cols=42  Identities=19%  Similarity=0.362  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           74 EELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV  115 (153)
Q Consensus        74 ~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l  115 (153)
                      ++|-.+|+.|..++..|..++..+++....+...+.+|.+++
T Consensus        33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl   74 (77)
T 2w83_C           33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL   74 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666666666666555555555555554444444443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=81.03  E-value=17  Score=27.98  Aligned_cols=48  Identities=13%  Similarity=0.023  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           72 LIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQ  119 (153)
Q Consensus        72 ~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq  119 (153)
                      .+.+-..-++.+..|...|..++..++.+...|..||..|-.+...-.
T Consensus        90 el~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk  137 (152)
T 3a7p_A           90 VIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT  137 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444567778888888888888888888888888888877664443

>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1

Probab=80.69  E-value=1.9  Score=24.57  Aligned_cols=20  Identities=40%  Similarity=0.401  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 041582          102 HQIVQENSQLKEKVSSLQLV  121 (153)
Q Consensus       102 ~~L~~EN~~Lr~~l~~Lq~~  121 (153)
                      ..|++||++|+++++.|-+.
T Consensus         9 asleaenkqlkakveellak   28 (31)
T 1p9i_A            9 ASLEAENKQLKAKVEELLAK   28 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45556666666666655443

>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}

Probab=80.49  E-value=11  Score=25.47  Aligned_cols=52  Identities=4%  Similarity=0.146  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           73 IEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKVSSLQLVISD  124 (153)
Q Consensus        73 l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~d  124 (153)
                      .+.+...+..|+.+...++..+......++.|++=.-.|..++...+.+|..
T Consensus         7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEG   58 (74)
T 2xv5_A            7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG   58 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3556666777777777777777777788888888888899999998887654

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=80.24  E-value=12  Score=29.13  Aligned_cols=48  Identities=25%  Similarity=0.395  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           66 RMRKKKLIEELQAQVNHVQTVNHQLSEKLISLLESNHQIVQENSQLKEKV  115 (153)
Q Consensus        66 R~RKk~~l~eLE~kv~~Le~eN~~L~~~i~~L~~~~~~L~~EN~~Lr~~l  115 (153)
                      |.||..  .++...+..++..+..|...+..|+.....|..+...|..+|
T Consensus        31 rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L   78 (168)
T 3o0z_A           31 RLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL   78 (168)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444  556666666666666666666666655555555555555544

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=80.04  E-value=2.5  Score=25.05  Aligned_cols=30  Identities=3%  Similarity=0.287  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041582           94 LISLLESNHQIVQENSQLKEKVSSLQLVIS  123 (153)
Q Consensus        94 i~~L~~~~~~L~~EN~~Lr~~l~~Lq~~L~  123 (153)
                      +..|+.+...|..+|..|..++..|+..|.
T Consensus         3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL~   32 (34)
T 1uo4_A            3 MKQIEDKGEEILSKLYHIENELARIKKLLG   32 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence            345666777778888888888888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	153
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	93.88
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	85.91
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	82.35

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.88  E-value=0.013  Score=38.86  Aligned_cols=27  Identities=22%  Similarity=0.377  Sum_probs=23.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 041582           49 EKRLKRVISNRESARRSRMRKKKLIEE   75 (153)
Q Consensus        49 ~KR~RR~lkNReSArrSR~RKk~~l~e   75 (153)
                      -+-.||.=+|+.+|+.+|+||....++
T Consensus        47 irDIRRRGKNKvAAqnCRKRKld~~d~   73 (74)
T d1sknp_          47 IRKIRRRGKNKVAARTCRQRRTDRHDK   73 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhcccHHHHHHHHHhhhhhhcc
Confidence            356789999999999999999887654

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=85.91  E-value=1.2  Score=29.61  Aligned_cols=66  Identities=18%  Similarity=0.206  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCCCc
Q 041582           77 QAQVNHVQTVNHQLSEKLISL-LESNHQIVQENSQLKEKVSSLQLVISDLLAPLRGLEEVNGNMNRP  142 (153)
Q Consensus        77 E~kv~~Le~eN~~L~~~i~~L-~~~~~~L~~EN~~Lr~~l~~Lq~~L~d~~~~~~~~~~~~~n~~~~  142 (153)
                      ..+++.|+.+...+..+++.+ .+....+..+-..|+.++..|...+..+..-+..+--...|++++
T Consensus        41 ~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi~~~  107 (110)
T d1seta1          41 KKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWP  107 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence            344444444444444444322 122334555555666666666555555544333333344465554

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.35  E-value=1.8  Score=27.77  Aligned_cols=13  Identities=31%  Similarity=0.480  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHH
Q 041582          104 IVQENSQLKEKVS  116 (153)
Q Consensus       104 L~~EN~~Lr~~l~  116 (153)
                      |..++..|..++.
T Consensus        71 l~~~~~~L~~~l~   83 (88)
T d1nkpa_          71 LRKRREQLKHKLE   83 (88)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3334444444443