Citrus Sinensis ID: 041596


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
MAAAARTKLETLITLLLLIISFAFPALAQEQEQCRSESTGGCHDRAAALKFKIIAVCSILVTSMIGVCLPLFTCAVPALQPDKDLFVIVKSFASGVILATGYMHVLPDSFDDLRSPCLPDHPWKEFPFTTFIAMLSAVVTLMVDSFAMSYYKRYCSKIAGQKTYSNSPSVEMGHAKNEQGHDEMNTQLLRHRVVAQVLELGIVVHSVVIGMAMGASDNPCTIRPLIAALCFHQLFEGMGLGGCILQVPDCIS
ccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHccccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccc
cccccHHHHHHHHHHHHHHHHHHHHHHHccccHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcEEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHccccccHEEEcccccc
MAAAARTKLETLITLLLLIISFAFPALAQEQEqcrsestggchDRAAALKFKIIAVCSILVTSMigvclplftcavpalqpdkdLFVIVKSFASGVILATGYmhvlpdsfddlrspclpdhpwkefpfTTFIAMLSAVVTLMVDSFAMSYYKRYCskiagqktysnspsvemghakneqghdEMNTQLLRHRVVAQVLELGIVVHSVVIGMamgasdnpctiRPLIAALCFHQLfegmglggcilqvpdcis
MAAAARTKLETLITLLLLIISFAFPALAQEQEQCRSESTGGCHDRAAALKFKIIAVCSILVTSMIGVCLPLFTCAVPALQPDKDLFVIVKSFASGVILATGYMHVLPDSFDDLRSPCLPDHPWKEFPFTTFIAMLSAVVTLMVDSFAMSYYKRYCSKIAGQKTYSNSPSVEMGHAKNEQGHDEMNTQLLRHRVVAQVLELGIVVHSVVIGMAMGASDNPCTIRPLIAALCFHQLFEGMGLGGCILQVPDCIS
MAAAARtkletlitlllliiSFAFPALAQEQEQCRSESTGGCHDRAAALKFKIIAVCSILVTSMIGVCLPLFTCAVPALQPDKDLFVIVKSFASGVILATGYMHVLPDSFDDLRSPCLPDHPWKEFPFTTFIAMLSAVVTLMVDSFAMSYYKRYCSKIAGQKTYSNSPSVEMGHAKNEQGHDEMNTQLLRHRVVAQVLELGIVVHSVVIGMAMGASDNPCTIRPLIAALCFHQLFEGMGLGGCILQVPDCIS
*******KLETLITLLLLIISFAFPALAQE********TGGCHDRAAALKFKIIAVCSILVTSMIGVCLPLFTCAVPALQPDKDLFVIVKSFASGVILATGYMHVLPDSFDDLRSPCLPDHPWKEFPFTTFIAMLSAVVTLMVDSFAMSYYKRYCSKIAG**************************QLLRHRVVAQVLELGIVVHSVVIGMAMGASDNPCTIRPLIAALCFHQLFEGMGLGGCILQVPDC**
***********LITLLLLIISFA*********************RAAALKFKIIAVCSILVTSMIGVCLPLFTCAVPALQPDKDLFVIVKSFASGVILATGYMHVLPDSFDDLRSPCLPDHPWKEFPFTTFIAMLSAVVTLMVDSFAMSYYKRYCSKIAGQKTYSNSPSVEMGHAKNEQGHDEMNTQLLRHRVVAQVLELGIVV***************CTIRPLIAALCFHQLFEGMGLGGCILQVPDC**
MAAAARTKLETLITLLLLIISFAFPALA*************CHDRAAALKFKIIAVCSILVTSMIGVCLPLFTCAVPALQPDKDLFVIVKSFASGVILATGYMHVLPDSFDDLRSPCLPDHPWKEFPFTTFIAMLSAVVTLMVDSFAMSYYKRYCSKIAGQKTYSNSPSVEMGHAKNEQGHDEMNTQLLRHRVVAQVLELGIVVHSVVIGMAMGASDNPCTIRPLIAALCFHQLFEGMGLGGCILQVPDCIS
*****RTKLETLITLLLLIISFAFPALAQEQEQCRSESTGGCHDRAAALKFKIIAVCSILVTSMIGVCLPLFTCAVPALQPDKDLFVIVKSFASGVILATGYMHVLPDSFDDLRSPCLPDHPWKEFPFTTFIAMLSAVVTLMVDSFAMSYYKRYC******************************TQLLRHRVVAQVLELGIVVHSVVIGMAMGASDNPCTIRPLIAALCFHQLFEGMGLGGCILQVPDCIS
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
iiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAAARTKLETLITLLLLIISFAFPALAQEQEQCRSESTGGCHDRAAALKFKIIAVCSILVTSMIGVCLPLFTCAVPALQPDKDLFVIVKSFASGVILATGYMHVLPDSFDDLRSPCLPDHPWKEFPFTTFIAMLSAVVTLMVDSFAMSYYKRYCSKIAGQKTYSNSPSVEMGHAKNEQGHDEMNTQLLRHRVVAQVLELGIVVHSVVIGMAMGASDNPCTIRPLIAALCFHQLFEGMGLGGCILQVPDCIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query252 2.2.26 [Sep-21-2011]
Q8W246365 Zinc transporter 7 OS=Ara yes no 0.932 0.643 0.556 1e-75
Q75HB1374 Fe(2+) transport protein yes no 0.873 0.588 0.540 6e-69
Q6L8G1370 Fe(2+) transport protein no no 0.841 0.572 0.565 8e-69
Q8S3W4347 Probable zinc transporter no no 0.956 0.694 0.530 4e-68
Q8W245364 Probable zinc transporter no no 0.928 0.642 0.511 2e-67
Q38856347 Fe(2+) transport protein no no 0.964 0.700 0.518 1e-64
O81850350 Fe(2+) transport protein no no 0.904 0.651 0.466 2e-57
Q6L8G0353 Zinc transporter 5 OS=Ory no no 0.948 0.677 0.455 7e-57
O81123355 Zinc transporter 1 OS=Ara no no 0.845 0.6 0.484 4e-53
Q9SLG3339 Zinc transporter 3 OS=Ara no no 0.884 0.657 0.451 3e-51
>sp|Q8W246|ZIP7_ARATH Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7 PE=2 SV=1 Back     alignment and function desciption
 Score =  282 bits (722), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 142/255 (55%), Positives = 187/255 (73%), Gaps = 20/255 (7%)

Query: 12  LITLLLLIISFAFPALAQEQE-----QCRSESTG-GCHDRAAALKFKIIAVCSILVTSMI 65
           L T+ +L++SF  P+LA   E     +C++ES    CH+   A K KIIA+ SILV SMI
Sbjct: 10  LTTITILLLSFTLPSLAGNAENADVSECKAESGDLSCHNNKEAQKLKIIAIPSILVASMI 69

Query: 66  GVCLPLFTCAVPALQPDKDLFVIVKSFASGVILATGYMHVLPDSFDDLRSPCLPDHPWKE 125
           GV LPLF+ ++PAL PD+++ VIVK+ ASGVILATG+MHVLPDSFDDL S CLP+ PW++
Sbjct: 70  GVSLPLFSRSIPALGPDREMSVIVKTLASGVILATGFMHVLPDSFDDLTSKCLPEDPWQK 129

Query: 126 FPFTTFIAMLSAVVTLMVDSFAMSYYKRYCSKIAGQ-----------KTYSNSPSVEMGH 174
           FPF TFI M+SA++ LM++SFAM  Y R  SK  G+            T ++  ++E G 
Sbjct: 130 FPFATFITMISALLVLMIESFAMCAYARRTSKREGEVVPLENGSNSVDTQNDIQTLENGS 189

Query: 175 A---KNEQGHDEMNTQLLRHRVVAQVLELGIVVHSVVIGMAMGASDNPCTIRPLIAALCF 231
           +   K E+ +++  ++LLR++V+AQ+LELGIVVHSVVIG+AMGASDN CT++ LIAALCF
Sbjct: 190 SYVEKQEKVNEDKTSELLRNKVIAQILELGIVVHSVVIGLAMGASDNKCTVQSLIAALCF 249

Query: 232 HQLFEGMGLGGCILQ 246
           HQLFEGMGLGG ILQ
Sbjct: 250 HQLFEGMGLGGSILQ 264




Probably mediates zinc uptake from the rhizosphere.
Arabidopsis thaliana (taxid: 3702)
>sp|Q75HB1|IRT1_ORYSJ Fe(2+) transport protein 1 OS=Oryza sativa subsp. japonica GN=IRT1 PE=2 SV=1 Back     alignment and function description
>sp|Q6L8G1|IRT2_ORYSJ Fe(2+) transport protein 2 OS=Oryza sativa subsp. japonica GN=IRT2 PE=2 SV=1 Back     alignment and function description
>sp|Q8S3W4|ZIP8_ARATH Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1 Back     alignment and function description
>sp|Q8W245|ZIP10_ARATH Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=3 SV=2 Back     alignment and function description
>sp|Q38856|IRT1_ARATH Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=2 Back     alignment and function description
>sp|O81850|IRT2_ARATH Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1 Back     alignment and function description
>sp|Q6L8G0|ZIP5_ORYSJ Zinc transporter 5 OS=Oryza sativa subsp. japonica GN=ZIP5 PE=2 SV=1 Back     alignment and function description
>sp|O81123|ZIP1_ARATH Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SLG3|ZIP3_ARATH Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
255546993351 zinc/iron transporter, putative [Ricinus 0.952 0.683 0.666 9e-88
224111794328 ZIP transporter [Populus trichocarpa] gi 0.837 0.643 0.659 2e-82
357521265 472 Iron regulated transporter [Medicago tru 0.924 0.493 0.612 2e-78
297814724 365 hypothetical protein ARALYDRAFT_484307 [ 0.932 0.643 0.592 4e-76
356502678 360 PREDICTED: fe(2+) transport protein 2-li 0.912 0.638 0.597 5e-75
62321010 365 putative root iron transporter protein [ 0.932 0.643 0.556 5e-74
15228062 365 zinc transporter 7 [Arabidopsis thaliana 0.932 0.643 0.556 8e-74
449434334348 PREDICTED: zinc transporter 7-like [Cucu 0.849 0.614 0.598 1e-73
225465696348 PREDICTED: probable zinc transporter 10 0.948 0.686 0.566 7e-73
255539789350 zinc/iron transporter, putative [Ricinus 0.924 0.665 0.571 4e-72
>gi|255546993|ref|XP_002514554.1| zinc/iron transporter, putative [Ricinus communis] gi|223546158|gb|EEF47660.1| zinc/iron transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  328 bits (842), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 168/252 (66%), Positives = 200/252 (79%), Gaps = 12/252 (4%)

Query: 4   AARTKLET-LITLLLLIISFAFPALAQEQEQCRSESTGG---CHDRAAALKFKIIAVCSI 59
           A R KL + ++  LL+I+SFA  A A+E   C S+S GG   CHD+A +LK K+IA+ SI
Sbjct: 2   ATRVKLRSKMVVSLLIILSFALTAFAEE---CESKSDGGGRGCHDKAKSLKLKLIAIASI 58

Query: 60  LVTSMIGVCLPLFTCAVPALQPDKDLFVIVKSFASGVILATGYMHVLPDSFDDLRSPCLP 119
           L+TSMIGVCLPLF+ AVPAL PD+DLF IVK+FASGVILATGYMHVLPDSFD LRS CLP
Sbjct: 59  LITSMIGVCLPLFSRAVPALMPDRDLFAIVKAFASGVILATGYMHVLPDSFDCLRSECLP 118

Query: 120 DHPWKEFPFTTFIAMLSAVVTLMVDSFAMSYYKRYCSKIAGQKTYSN---SPSVEMGHAK 176
           ++PW++FPFTTF+AMLSA+ TLMVDSFAMSYYK++           +     + E+G+  
Sbjct: 119 ENPWRKFPFTTFVAMLSALFTLMVDSFAMSYYKKWGIDNGATGGGHHHHIKGAEELGNLA 178

Query: 177 NEQGHD-EMNTQ-LLRHRVVAQVLELGIVVHSVVIGMAMGASDNPCTIRPLIAALCFHQL 234
            E   D + N++ LLRHRVVAQVLELGIVVHSVVIG++MGASDNPCTIRPLIAALCFHQL
Sbjct: 179 VEDNTDGKANSEVLLRHRVVAQVLELGIVVHSVVIGLSMGASDNPCTIRPLIAALCFHQL 238

Query: 235 FEGMGLGGCILQ 246
           FEGMGLGGCILQ
Sbjct: 239 FEGMGLGGCILQ 250




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111794|ref|XP_002315981.1| ZIP transporter [Populus trichocarpa] gi|222865021|gb|EEF02152.1| ZIP transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357521265|ref|XP_003630921.1| Iron regulated transporter [Medicago truncatula] gi|355524943|gb|AET05397.1| Iron regulated transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|297814724|ref|XP_002875245.1| hypothetical protein ARALYDRAFT_484307 [Arabidopsis lyrata subsp. lyrata] gi|297321083|gb|EFH51504.1| hypothetical protein ARALYDRAFT_484307 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356502678|ref|XP_003520144.1| PREDICTED: fe(2+) transport protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|62321010|dbj|BAD94060.1| putative root iron transporter protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15228062|ref|NP_178488.1| zinc transporter 7 [Arabidopsis thaliana] gi|37090227|sp|Q8W246.1|ZIP7_ARATH RecName: Full=Zinc transporter 7; AltName: Full=ZRT/IRT-like protein 7; Flags: Precursor gi|17385788|gb|AAL38434.1|AF369911_1 putative metal transporter ZIP7 [Arabidopsis thaliana] gi|20198145|gb|AAM15429.1| putative root iron transporter protein [Arabidopsis thaliana] gi|20198168|gb|AAM15439.1| putative root iron transporter protein [Arabidopsis thaliana] gi|50253556|gb|AAT71980.1| At2g04032 [Arabidopsis thaliana] gi|330250686|gb|AEC05780.1| zinc transporter 7 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449434334|ref|XP_004134951.1| PREDICTED: zinc transporter 7-like [Cucumis sativus] gi|449479586|ref|XP_004155644.1| PREDICTED: zinc transporter 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225465696|ref|XP_002273179.1| PREDICTED: probable zinc transporter 10 [Vitis vinifera] gi|147814782|emb|CAN72233.1| hypothetical protein VITISV_032803 [Vitis vinifera] gi|296085329|emb|CBI29061.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539789|ref|XP_002510959.1| zinc/iron transporter, putative [Ricinus communis] gi|223550074|gb|EEF51561.1| zinc/iron transporter, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
TAIR|locus:2827434365 ZIP7 "zinc transporter 7 precu 0.896 0.619 0.573 2.5e-65
UNIPROTKB|Q6L8G1 370 IRT2 "Fe(2+) transport protein 0.476 0.324 0.619 1.4e-64
UNIPROTKB|Q75HB1 374 IRT1 "Fe(2+) transport protein 0.607 0.409 0.502 4.8e-64
TAIR|locus:2197520 364 ZIP10 "zinc transporter 10 pre 0.662 0.458 0.488 8.8e-63
TAIR|locus:2133965347 IRT1 "iron-regulated transport 0.888 0.645 0.537 1.9e-58
UNIPROTKB|A3BI11 390 ZIP8 "Zinc transporter 8" [Ory 0.492 0.317 0.52 1.4e-52
TAIR|locus:2133950350 IRT2 "iron regulated transport 0.876 0.631 0.484 2.1e-52
UNIPROTKB|Q6L8G0353 ZIP5 "Zinc transporter 5" [Ory 0.869 0.620 0.474 2.2e-50
TAIR|locus:2087705355 ZIP1 "zinc transporter 1 precu 0.837 0.594 0.497 1.2e-49
TAIR|locus:2062576339 ZIP3 "zinc transporter 3 precu 0.829 0.616 0.477 1.2e-47
TAIR|locus:2827434 ZIP7 "zinc transporter 7 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 141/246 (57%), Positives = 181/246 (73%)

Query:    21 SFAFPALAQEQE-----QCRSESTG-GCHDRAAALKFKIIAVCSILVTSMIGVCLPLFTC 74
             SF  P+LA   E     +C++ES    CH+   A K KIIA+ SILV SMIGV LPLF+ 
Sbjct:    19 SFTLPSLAGNAENADVSECKAESGDLSCHNNKEAQKLKIIAIPSILVASMIGVSLPLFSR 78

Query:    75 AVPALQPDKDLFVIVKSFASGVILATGYMHVLPDSFDDLRSPCLPDHPWKEFPFTTFIAM 134
             ++PAL PD+++ VIVK+ ASGVILATG+MHVLPDSFDDL S CLP+ PW++FPF TFI M
Sbjct:    79 SIPALGPDREMSVIVKTLASGVILATGFMHVLPDSFDDLTSKCLPEDPWQKFPFATFITM 138

Query:   135 LSAVVTLMVDSFAMSYYKRYCSKIAGQ----KTYSNS-------PSVEMGHA---KNEQG 180
             +SA++ LM++SFAM  Y R  SK  G+    +  SNS        ++E G +   K E+ 
Sbjct:   139 ISALLVLMIESFAMCAYARRTSKREGEVVPLENGSNSVDTQNDIQTLENGSSYVEKQEKV 198

Query:   181 HDEMNTQLLRHRVVAQVLELGIVVHSVVIGMAMGASDNPCTIRPLIAALCFHQLFEGMGL 240
             +++  ++LLR++V+AQ+LELGIVVHSVVIG+AMGASDN CT++ LIAALCFHQLFEGMGL
Sbjct:   199 NEDKTSELLRNKVIAQILELGIVVHSVVIGLAMGASDNKCTVQSLIAALCFHQLFEGMGL 258

Query:   241 GGCILQ 246
             GG ILQ
Sbjct:   259 GGSILQ 264




GO:0005385 "zinc ion transmembrane transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006812 "cation transport" evidence=ISS
GO:0008324 "cation transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0030001 "metal ion transport" evidence=IEA
GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0071577 "zinc ion transmembrane transport" evidence=IEA
GO:0006826 "iron ion transport" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
GO:0010106 "cellular response to iron ion starvation" evidence=RCA
UNIPROTKB|Q6L8G1 IRT2 "Fe(2+) transport protein 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q75HB1 IRT1 "Fe(2+) transport protein 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2197520 ZIP10 "zinc transporter 10 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133965 IRT1 "iron-regulated transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A3BI11 ZIP8 "Zinc transporter 8" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2133950 IRT2 "iron regulated transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6L8G0 ZIP5 "Zinc transporter 5" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2087705 ZIP1 "zinc transporter 1 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062576 ZIP3 "zinc transporter 3 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8W246ZIP7_ARATHNo assigned EC number0.55680.93250.6438yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
gw1.X.438.1
ZIP transporter (328 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
TIGR00820324 TIGR00820, zip, ZIP zinc/iron transport family 9e-97
PLN02159337 PLN02159, PLN02159, Fe(2+) transport protein 2e-84
pfam02535314 pfam02535, Zip, ZIP Zinc transporter 8e-42
>gnl|CDD|233141 TIGR00820, zip, ZIP zinc/iron transport family Back     alignment and domain information
 Score =  285 bits (732), Expect = 9e-97
 Identities = 117/223 (52%), Positives = 151/223 (67%), Gaps = 10/223 (4%)

Query: 34  CRSESTGGCHDRAAALKFKIIAVCSILVTSMIGVCLPLFTCAVPALQPDKDLFVIVKSFA 93
           C  E    C+++  ALK KI+A+ SIL+ S+IGV  PL    VP+L+P+ + F + K+FA
Sbjct: 1   CSHEDDNSCNNKEGALKLKIVAIFSILLASVIGVMFPLIGKNVPSLRPEGNFFFVAKAFA 60

Query: 94  SGVILATGYMHVLPDSFDDLRSPCLPDHPWKEFPFTTFIAMLSAVVTLMVDSFAMSYYKR 153
           +GVILATG+MHVLP++F+ L SPCL   PW +FPF  FIAM+SA++TL+VD FA SYY+R
Sbjct: 61  AGVILATGFMHVLPEAFEMLSSPCLESTPWGKFPFAGFIAMISAILTLLVDLFATSYYER 120

Query: 154 -YCSKIAGQKTYSNSPSVEM----GHAKNEQGHDEM-----NTQLLRHRVVAQVLELGIV 203
            +     G K        E         +E   D +       QLLR RVVAQVLELGI+
Sbjct: 121 KHGKGDHGSKEIKVGDGEEGTAGGTKHGHEYYEDHVHTNSEVVQLLRQRVVAQVLELGII 180

Query: 204 VHSVVIGMAMGASDNPCTIRPLIAALCFHQLFEGMGLGGCILQ 246
           VHSVVIG+++GAS +P TI+PLIAAL FHQ FEG+GLGGCI Q
Sbjct: 181 VHSVVIGLSLGASQSPDTIKPLIAALSFHQFFEGLGLGGCISQ 223


The Zinc (Zn2+)-Iron (Fe2+) Permease (ZIP) Family (TC 2.A.5)Members of the ZIP family consist of proteins with eight putative transmembrane spanners. They are derived from animals, plants and yeast. Theycomprise a diverse family, with several paralogues in any one organism (e.g., at least five in Caenorabditis elegans, at least five in Arabidopsis thaliana and two inSaccharomyces cervisiae. The two S. cerevisiae proteins, Zrt1 and Zrt2, both probably transport Zn2+ with high specificity, but Zrt1 transports Zn2+ with ten-fold higher affinitythan Zrt2. Some members of the ZIP family have been shown to transport Zn2+ while others transport Fe2+, and at least one transports a range of metal ions. The energy source fortransport has not been characterized, but these systems probably function as secondary carriers [Transport and binding proteins, Cations and iron carrying compounds]. Length = 324

>gnl|CDD|177818 PLN02159, PLN02159, Fe(2+) transport protein Back     alignment and domain information
>gnl|CDD|217089 pfam02535, Zip, ZIP Zinc transporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 252
PLN02159337 Fe(2+) transport protein 100.0
KOG1558327 consensus Fe2+/Zn2+ regulated transporter [Inorgan 100.0
TIGR00820324 zip ZIP zinc/iron transport family. transport has 100.0
PF02535317 Zip: ZIP Zinc transporter; InterPro: IPR003689 The 99.97
PRK04201265 zinc transporter ZupT; Provisional 99.84
COG0428266 Predicted divalent heavy-metal cations transporter 99.52
KOG3907 303 consensus ZIP-like zinc transporter proteins [Intr 98.95
KOG2694361 consensus Putative zinc transporter [Inorganic ion 98.47
KOG2693453 consensus Putative zinc transporter [Inorganic ion 98.09
PF02535317 Zip: ZIP Zinc transporter; InterPro: IPR003689 The 96.28
PRK04201265 zinc transporter ZupT; Provisional 95.56
COG0428266 Predicted divalent heavy-metal cations transporter 93.82
TIGR00820324 zip ZIP zinc/iron transport family. transport has 91.62
KOG1558327 consensus Fe2+/Zn2+ regulated transporter [Inorgan 91.41
PLN02159337 Fe(2+) transport protein 88.06
>PLN02159 Fe(2+) transport protein Back     alignment and domain information
Probab=100.00  E-value=8.2e-45  Score=330.97  Aligned_cols=235  Identities=55%  Similarity=0.905  Sum_probs=194.5

Q ss_pred             HHHHHHHHHHHHhhc-cccccccccccCCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhccccCCCCCchhHHH
Q 041596           10 ETLITLLLLIISFAF-PALAQEQEQCRSESTGGCHDRAAALKFKIIAVCSILVTSMIGVCLPLFTCAVPALQPDKDLFVI   88 (252)
Q Consensus        10 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lKi~~i~~il~~sllg~~lPl~~~~~~~~~~~~~~ls~   88 (252)
                      .+.+++++++.++.+ ++.+.++++|+.+.+.+|.|+++.+++|++++++|+++|++|+++|++.|+.++.|.+++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~lki~al~vil~~sllg~~lP~~~~~~~~~~~~~~~~~~   83 (337)
T PLN02159          4 MKLVFILLILVSFAVSPATSTAPEECDSESANPCINKAKALPLKIIAIVAILTTSMIGVTAPLFSRYVSFLRPDGNIFTI   83 (337)
T ss_pred             HHHHHHHHHHHHHHcCccccCCCccccCCCCcCccCchhccchHHHHHHHHHHHHHHHHHHHHHHHHccccCCchhHHHH
Confidence            345677777778777 4667788899997778999999999999999999999999999999999988888888999999


Q ss_pred             HHHHhhHHHHHHHhhhhcHhhhhhhcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCC
Q 041596           89 VKSFASGVILATGYMHVLPDSFDDLRSPCLPDHPWKEFPFTTFIAMLSAVVTLMVDSFAMSYYKRYCSKIAGQKTYSNSP  168 (252)
Q Consensus        89 ~~~FaaGV~LataflHLLPea~e~l~~~~~~~~~~~~yP~~~~i~~~Gf~l~~~iE~~~~~~~~~~~~~~~~~~~~~~~~  168 (252)
                      ++||++||+|||+|+|||||+.|.++++|++...|++||++++++++|+++++++|++.+.++++++..+   ...    
T Consensus        84 ~~~FagGV~Lat~flHLLp~a~e~l~~~cl~~~~~~~yP~~~~i~~~g~~l~~liE~~~~~~~~~~~~~~---~~~----  156 (337)
T PLN02159         84 VKCFASGIILGTGFMHVLPDSFEMLSSKCLEDNPWHKFPFAGFVAMLSGLVTLAIDSMATSLYTSKNSVG---PMP----  156 (337)
T ss_pred             HHHHhhhHhHHHHHHHhhhHHHHhhhchhhcCCCcccCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---ccc----
Confidence            9999999999999999999999999999998888899999999999999999999999998775543210   000    


Q ss_pred             CcccCCCCCC--CCCCcchhhhHhHHHHHHHHHHHHhhhhhHHHhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 041596          169 SVEMGHAKNE--QGHDEMNTQLLRHRVVAQVLELGIVVHSVVIGMAMGASDNPCTIRPLIAALCFHQLFEGMGLGGCILQ  246 (252)
Q Consensus       169 ~~~~~~~~~~--h~~~~~~~~~~~~~i~~~~L~~gis~HSv~eGlaLGv~~~~~~i~~L~~AI~~Hk~~Eg~aLG~~l~~  246 (252)
                      ++.+.+.+..  +..++++++..|+++.++++++|+++||++||+++|++++.+.++++++||++||+|||+++|+++.+
T Consensus       157 ~h~h~~~~~~~~~~~~~~~~~~~r~~~~a~~l~~gl~lHS~~eGlalG~~~~~~~~~~l~~AI~~Hk~~eg~aLg~~L~~  236 (337)
T PLN02159        157 DHGHSHGHGVVLKTKDDGNAQLLRYRVIAMVLELGIIVHSVVIGLSLGATNDTCTIKGLIAALCFHQMFEGMGLGGCILQ  236 (337)
T ss_pred             ccCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHhchhhhcCCCchhHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            0111111110  00011123456667788999999999999999999999988888999999999999999999999999


Q ss_pred             CCCCC
Q 041596          247 VPDCI  251 (252)
Q Consensus       247 ~~~~~  251 (252)
                      ++++.
T Consensus       237 ~~~~~  241 (337)
T PLN02159        237 AEYTN  241 (337)
T ss_pred             ccCcH
Confidence            98863



>KOG1558 consensus Fe2+/Zn2+ regulated transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00820 zip ZIP zinc/iron transport family Back     alignment and domain information
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [] Back     alignment and domain information
>PRK04201 zinc transporter ZupT; Provisional Back     alignment and domain information
>COG0428 Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3907 consensus ZIP-like zinc transporter proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2694 consensus Putative zinc transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2693 consensus Putative zinc transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [] Back     alignment and domain information
>PRK04201 zinc transporter ZupT; Provisional Back     alignment and domain information
>COG0428 Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00820 zip ZIP zinc/iron transport family Back     alignment and domain information
>KOG1558 consensus Fe2+/Zn2+ regulated transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02159 Fe(2+) transport protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 21/196 (10%), Positives = 53/196 (27%), Gaps = 53/196 (27%)

Query: 76  VPALQPD--KDL-FVIVKSFASGVILATGYMHVLPDSFDDLRSPCLPDHPWKEFPFTTFI 132
           +   +     +     V+     ++      H++        +  L         F T +
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL---------FWTLL 72

Query: 133 AMLSAVVTLMVDS-------FAMSYYKRYCSKIAG---------QKTYSNSPSVEMGHAK 176
           +    +V   V+        F MS  K    + +           + Y+++      +  
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 177 NEQGHDEMNTQLLRHRVVAQVLELGIVVHSVVIGMA-MGASDNPCTIRPLIAALC----F 231
             Q + ++   LL  R         +++     G+   G +        +   +C     
Sbjct: 133 RLQPYLKLRQALLELRP-----AKNVLID----GVLGSGKT---W----VALDVCLSYKV 176

Query: 232 HQLFEG----MGLGGC 243
               +     + L  C
Sbjct: 177 QCKMDFKIFWLNLKNC 192


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00