Citrus Sinensis ID: 041607

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
MTGLVMMTKGGGCAGGDGGMGRRQKERERLKRNRTSSRWWREDVISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSAR
Secondary Structure (PSIPRED)
cccEEEEEcccccccccccccccHHHHHHHHHHcccccccccccccccccEEEccccccEEEEEEEEcccccccccccccEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MTGLVmmtkgggcaggdggmgrrQKERERLKrnrtssrwwREDVISAVHNmeigcptnvrhitHATFDrfndflglpvefevevpcrvpsar
Flexible Loop (DISEMBL)
mtglvmmtkgggcaggdggmgrrqkererlkrnrtssrwwreDVISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFevevpcrvpsar
Low Complexity Region (SEG)
MTGLVMMTKgggcaggdggmgRRQKERERLKRNRTSSRWWREDVISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSAR
Disordered region (IsUnstruct)
*************************************RWWREDVISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCR*****
Disordered Region (DISOPRED)
**G*VM**KG********************************DVISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVE**C******
Disordered Region (DISEMBL)
MTGLVMMTKGGGCAG*********************SRWWREDVISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSAR
Disordered Region (DISPRO)
*TGLVMMTKGGGCAG**********************************NMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEV********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTGLVMMTKGGGCAGGDGGMGRRQKERERLKRNRTSSRWWREDVISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
413968502	215	putative rac GTPase activating protein [	0.956	0.409	0.504	2e-18
356505493	467	PREDICTED: uncharacterized protein LOC10	0.967	0.190	0.504	3e-17
356535579	458	PREDICTED: uncharacterized protein LOC10	0.543	0.109	0.8	3e-17
225436823	479	PREDICTED: uncharacterized protein LOC10	0.673	0.129	0.714	4e-17
449462300	481	PREDICTED: uncharacterized protein LOC10	0.554	0.106	0.803	4e-17
356500248	456	PREDICTED: uncharacterized protein LOC10	0.543	0.109	0.78	7e-17
255559366	446	gtpase activating protein, putative [Ric	0.858	0.177	0.6	7e-17
224131264	320	predicted protein [Populus trichocarpa]	0.543	0.156	0.754	2e-16
357442607	108	hypothetical protein MTR_1g089220 [Medic	1.0	0.851	0.537	3e-16
358348126	435	Rac GTPase activating protein [Medicago	0.967	0.204	0.509	9e-16

>gi|413968502|gb|AFW90588.1| putative rac GTPase activating protein [Solanum tuberosum]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 17/105 (16%)

Query: 1   MTGLVMMTKGGGCAGGDGGMGRRQKERER-------------LKRNRTSSRWWR-EDVIS 46
           MTGLVM+T+GGGC  G         E +              L+++  S R  R EDV+S
Sbjct: 1   MTGLVMVTRGGGCGNGKNSSKAAAAEMQNQQQLSLVDFILAALRKSMVSCRVDRQEDVVS 60

Query: 47  AVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
           AV   EIG PT+V+H+TH TFDRF+ FLGLP+EF+VE+PCRVPSA
Sbjct: 61  AV---EIGWPTDVQHLTHVTFDRFHGFLGLPLEFQVEIPCRVPSA 102

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505493|ref|XP_003521525.1| PREDICTED: uncharacterized protein LOC100812700 [Glycine max]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/107 (50%), Positives = 66/107 (61%), Gaps = 18/107 (16%)

Query: 1   MTGLVMMTKGGGCAGGDGGMGRRQKERER--------------LKRNRTS-SRWWREDVI 45
           MTG V++T GGGCA    G GRR    E               L+++  + S    +DVI
Sbjct: 1   MTGQVVVTNGGGCAAV--GKGRRAAAGEEEQNPASPVALLLAALRKSMVACSVDSPDDVI 58

Query: 46  SAVHN-MEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
           SAVH+ MEIG PTNV+H++H TFDRFN FLGLP+E EV VP  VPSA
Sbjct: 59  SAVHHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVHVPAPVPSA 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535579|ref|XP_003536322.1| PREDICTED: uncharacterized protein LOC100801481 [Glycine max]

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/50 (80%), Positives = 44/50 (88%)

Query: 42  EDVISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
           EDVIS VH+MEIG PTNV+HITH TFDRFN FLGLP EF+VE+P RVPSA
Sbjct: 59  EDVISTVHHMEIGWPTNVQHITHVTFDRFNGFLGLPYEFQVEIPARVPSA 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436823|ref|XP_002270566.1| PREDICTED: uncharacterized protein LOC100252743 [Vitis vinifera]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/63 (71%), Positives = 50/63 (79%), Gaps = 1/63 (1%)

Query: 30  LKRNRTSSRWWR-EDVISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRV 88
           L+++  + R  R +DVISAV  MEIG PTNVRHITH TFDRFN FLGLP EFEVEVP RV
Sbjct: 46  LRKSMVACRVDRSDDVISAVQQMEIGWPTNVRHITHVTFDRFNGFLGLPSEFEVEVPGRV 105

Query: 89  PSA 91
           PSA
Sbjct: 106 PSA 108

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462300|ref|XP_004148879.1| PREDICTED: uncharacterized protein LOC101220148 [Cucumis sativus] gi|449491523|ref|XP_004158925.1| PREDICTED: uncharacterized protein LOC101230412 [Cucumis sativus]

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/51 (80%), Positives = 44/51 (86%)

Query: 41  REDVISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
           RED+IS VH+MEIG PTNVRHI H TFDRFN FLGLPVEFEVE+P  VPSA
Sbjct: 62  REDLISTVHHMEIGWPTNVRHIAHVTFDRFNGFLGLPVEFEVEIPSSVPSA 112

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500248|ref|XP_003518945.1| PREDICTED: uncharacterized protein LOC100807134 [Glycine max]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 42  EDVISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
           +DVIS VH+MEIG PTNV+HITH TFDRFN FLGLP EF+VE+P RVPSA
Sbjct: 58  DDVISTVHHMEIGWPTNVQHITHVTFDRFNGFLGLPYEFQVEIPARVPSA 107

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559366|ref|XP_002520703.1| gtpase activating protein, putative [Ricinus communis] gi|223540088|gb|EEF41665.1| gtpase activating protein, putative [Ricinus communis]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 62/95 (65%), Gaps = 16/95 (16%)

Query: 1  MTGLVMMTKGGGCAGGDGGMGRRQKERERLKRNRTSSRWWREDVISAV----HNMEIGCP 56
          MTGLVM+TKGG C G  G    R   +ER            EDVI       H+MEIG P
Sbjct: 1  MTGLVMVTKGGSCGGSGGVRAARGTTKER------------EDVIPTNIHHHHHMEIGWP 48

Query: 57 TNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
          TNV+HITH TFDRFN FLGLPVEFEVE+PCRVPSA
Sbjct: 49 TNVQHITHVTFDRFNGFLGLPVEFEVEIPCRVPSA 83

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131264|ref|XP_002321041.1| predicted protein [Populus trichocarpa] gi|222861814|gb|EEE99356.1| predicted protein [Populus trichocarpa]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/53 (75%), Positives = 46/53 (86%), Gaps = 3/53 (5%)

Query: 42  EDVI---SAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
           +DVI   S +H+M+IG PTNV+HITH TFDRFN FLGLPVEFEVE+PCRVPSA
Sbjct: 57  DDVIPTSSTLHHMDIGWPTNVQHITHVTFDRFNGFLGLPVEFEVEIPCRVPSA 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442607|ref|XP_003591581.1| hypothetical protein MTR_1g089220 [Medicago truncatula] gi|355480629|gb|AES61832.1| hypothetical protein MTR_1g089220 [Medicago truncatula]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 69/108 (63%), Gaps = 16/108 (14%)

Query: 1   MTGLVMMTKGGGCAGGDGGMGRRQKERER--------------LKRNRTSSRWWRED--V 44
           MTGLVM+T+GGGC GG       Q E +               ++++  + R  R D  V
Sbjct: 1   MTGLVMVTRGGGCGGGSKRTRPTQTEEDEQQNQLSLVALLLAAIRKSMVACRVDRPDHEV 60

Query: 45  ISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSAR 92
           IS VH MEIG PT+V+HITH TFDRFN FLGLPVEFEVE+P RVPSAR
Sbjct: 61  ISTVHQMEIGWPTDVQHITHVTFDRFNGFLGLPVEFEVEIPGRVPSAR 108

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348126|ref|XP_003638100.1| Rac GTPase activating protein [Medicago truncatula] gi|355504035|gb|AES85238.1| Rac GTPase activating protein [Medicago truncatula]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 62/102 (60%), Gaps = 13/102 (12%)

Query: 1   MTGLVMMTKGGGCAGGDGGMGRRQKERE---------RLKRNRTS-SRWWREDVISAVHN 50
           M G VM++  GGC G  G  G R    E          LK++  + S    +DVISAVH+
Sbjct: 1   MRGPVMVS--GGCGGVKGRRGSRDGSEEVSPAALMLAALKKSMVACSVESPDDVISAVHH 58

Query: 51  -MEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
            MEIG PTNV+H+ H TFDRFN FLGLP+E EV VP  VPSA
Sbjct: 59  PMEIGWPTNVKHVNHVTFDRFNGFLGLPLELEVHVPAPVPSA 100

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
TAIR|locus:2139330	430	AT4G03100 [Arabidopsis thalian	0.521	0.111	0.770	1e-15
TAIR|locus:2176392	466	AT5G22400 [Arabidopsis thalian	0.456	0.090	0.785	1.1e-12
TAIR|locus:2080762	435	AT3G11490 [Arabidopsis thalian	0.456	0.096	0.738	9.3e-12
TAIR|locus:2062770	455	ROPGAP3 "ROP guanosine triphos	0.510	0.103	0.6	1.6e-10
TAIR|locus:2199948	331	AT1G08340 [Arabidopsis thalian	0.445	0.123	0.658	1.7e-10

TAIR|locus:2139330 AT4G03100 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 37/48 (77%), Positives = 42/48 (87%)

Query:    44 VISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
             + SAVH+MEIG PTNVRHITH TFDRF+ FLGLP E +VE+PCRVPSA
Sbjct:    71 ISSAVHHMEIGWPTNVRHITHVTFDRFHGFLGLPHELQVEIPCRVPSA 118

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

TAIR|locus:2176392 AT5G22400 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 33/42 (78%), Positives = 35/42 (83%)

Query:    50 NMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
             +MEIG PTNVRH+ H TFDRFN FLGLPVEFE EVP R PSA
Sbjct:   114 SMEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSA 155

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0030675 "Rac GTPase activator activity" evidence=ISS

TAIR|locus:2080762 AT3G11490 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 9.3e-12, P = 9.3e-12
 Identities = 31/42 (73%), Positives = 35/42 (83%)

Query:    50 NMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
             +MEIG PT+VRH+ H TFDRF+ FLGLPVEFE EVP R PSA
Sbjct:    90 SMEIGVPTDVRHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSA 131

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0030675 "Rac GTPase activator activity" evidence=ISS

TAIR|locus:2062770 ROPGAP3 "ROP guanosine triphosphatase (GTPase)-activating protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 30/50 (60%), Positives = 38/50 (76%)

Query:    42 EDVISAVHNMEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
             +DV+++   M+IG PT V+H++H TFDRFN FLGLP E E EVP R PSA
Sbjct:    97 DDVVAS---MDIGWPTEVKHVSHVTFDRFNGFLGLPSELEPEVPPRAPSA 143

GO:0005737 "cytoplasm" evidence=ISM

GO:0030675 "Rac GTPase activator activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009531 "secondary cell wall" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IMP

TAIR|locus:2199948 AT1G08340 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query:    51 MEIGCPTNVRHITHATFDRFNDFLGLPVEFEVEVPCRVPSA 91
             M+IG PTN+RH+ H TFDRF+ FLGLP EFE +VP + PSA
Sbjct:     1 MDIGGPTNIRHVAHVTFDRFDGFLGLPSEFEPDVPRKAPSA 41


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.135   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       92        80   0.00091  102 3  11 22  0.49    28
                                                     29  0.41    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  111 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.29u 0.14s 10.43t   Elapsed:  00:00:00
  Total cpu time:  10.29u 0.15s 10.44t   Elapsed:  00:00:00
  Start:  Mon May 20 17:11:05 2013   End:  Mon May 20 17:11:05 2013

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIV.2765.1 hypothetical protein (320 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	92
pfam00786	59	pfam00786, PBD, P21-Rho-binding domain	5e-08
cd01093	46	cd01093, CRIB_PAK_like, PAK (p21 activated kinase)	6e-05
smart00285	36	smart00285, PBD, P21-Rho-binding domain	1e-04
cd00132	42	cd00132, CRIB, PAK (p21 activated kinase) Binding	5e-04

>gnl|CDD|144398 pfam00786, PBD, P21-Rho-binding domain

 Score = 45.1 bits (107), Expect = 5e-08
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 52 EIGCPTNVRHITHATFDRFNDFL-GLPVEFEVEVP 85
          EI  PTN +H+ H  FD    F  GLP E+E  +P
Sbjct: 1  EISTPTNFKHVVHVGFDGQTGFFTGLPPEWEKLLP 35

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). Length = 59

>gnl|CDD|238526 cd01093, CRIB_PAK_like, PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

 Score = 36.5 bits (85), Expect = 6e-05
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 51 MEIGCPTNVRHITHATFD-RFNDFLGLPVEFEV 82
           EI  PTN +H  H  FD +  +F GLP E++ 
Sbjct: 1  PEISSPTNFKHRVHVGFDPQTGEFTGLPEEWQR 33

This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins. Length = 46

>gnl|CDD|197628 smart00285, PBD, P21-Rho-binding domain

 Score = 36.0 bits (84), Expect = 1e-04
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 53 IGCPTNVRHITHATFDRFND-FLGLPVEFEVEVPC 86
          I  PTN +HI H  FD     F GLP E++  +  
Sbjct: 1  ISTPTNFKHIAHVGFDGQTGGFTGLPTEWKSLLKT 35

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). Length = 36

>gnl|CDD|238077 cd00132, CRIB, PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

 Score = 34.3 bits (79), Expect = 5e-04
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 51 MEIGCPTNVRHITHATFDRF 70
          MEI  PT+ +HI+H  +D  
Sbjct: 1  MEISTPTDFKHISHVGWDGV 20

CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	92
smart00285	36	PBD P21-Rho-binding domain. Small domains that bin	99.4
cd00132	42	CRIB PAK (p21 activated kinase) Binding Domain (PB	99.35
cd01093	46	CRIB_PAK_like PAK (p21 activated kinase) Binding D	99.32
PF00786	59	PBD: P21-Rho-binding domain; InterPro: IPR000095 T	99.31
KOG4270	577	consensus GTPase-activator protein [Signal transdu	98.61
KOG0578	550	consensus p21-activated serine/threonine protein k	97.66
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	97.24

>smart00285 PBD P21-Rho-binding domain

Probab=99.40  E-value=8.9e-14  Score=80.33  Aligned_cols=33  Identities=42%  Similarity=0.791  Sum_probs=30.0

Q ss_pred             ecCCcccceeeeeeeeC-CCCccCCCccccccCC
Q 041607           53 IGCPTNVRHITHATFDR-FNDFLGLPVEFEVEVP   85 (92)
Q Consensus        53 IG~PTDVrHVaHVgfD~-~nGF~GLP~Ele~evp   85 (92)
                      ||.||||+|++|||||+ ..+|.|||++|+..+.
T Consensus         1 IS~P~nf~H~~HVg~d~~~~~f~glp~ew~~~l~   34 (36)
T smart00285        1 ISTPTDFKHIAHVGFDGQTGEFTGLPTEWESLLK   34 (36)
T ss_pred             CCCCCCCcEEEEeeECCCCCccCCCCHHHHHHhc
Confidence            89999999999999998 6789999999987653

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).

>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

Probab=99.35  E-value=1.2e-13  Score=81.66  Aligned_cols=36  Identities=31%  Similarity=0.464  Sum_probs=30.6

Q ss_pred             ceecCCcccceeeeeeeeCCCCcc-CCCccccccCCC
Q 041607           51 MEIGCPTNVRHITHATFDRFNDFL-GLPVEFEVEVPC   86 (92)
Q Consensus        51 MeIG~PTDVrHVaHVgfD~~nGF~-GLP~Ele~evp~   86 (92)
                      |+||.||||+||+|||||+...|. ++|++|+..+..
T Consensus         1 ~~IS~Ptnf~H~~HvG~d~~g~~~~~~p~~w~~l~~~   37 (42)
T cd00132           1 MEISTPTDFKHISHVGWDGVGFDGANLPPDLQSLFQT   37 (42)
T ss_pred             CcccCCCCcCcccccCCCCCCccccCCCHHHHHHHHH
Confidence            689999999999999999983344 899999887654

CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.

>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

Probab=99.32  E-value=3.9e-13  Score=80.81  Aligned_cols=34  Identities=41%  Similarity=0.707  Sum_probs=30.1

Q ss_pred             eecCCcccceeeeeeeeCCC-CccCCCccccccCC
Q 041607           52 EIGCPTNVRHITHATFDRFN-DFLGLPVEFEVEVP   85 (92)
Q Consensus        52 eIG~PTDVrHVaHVgfD~~n-GF~GLP~Ele~evp   85 (92)
                      +||.||||+|+.||+||+.+ +|.|||++|+..+.
T Consensus         2 ~IS~P~n~~H~~Hv~~d~~~g~f~glP~eW~~ll~   36 (46)
T cd01093           2 EISSPTNFKHRVHVGFDPQTGEFTGLPEEWQRLLK   36 (46)
T ss_pred             ccCCCCCceeeeEeeECCCCCcccCCCHHHHHHHH
Confidence            69999999999999999955 59999999987653

This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.

>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown

Probab=99.31  E-value=2.3e-13  Score=84.43  Aligned_cols=36  Identities=36%  Similarity=0.659  Sum_probs=26.7

Q ss_pred             eecCCcccceeeeeeeeCCCC-ccCCCccccccCCCC
Q 041607           52 EIGCPTNVRHITHATFDRFND-FLGLPVEFEVEVPCR   87 (92)
Q Consensus        52 eIG~PTDVrHVaHVgfD~~nG-F~GLP~Ele~evp~~   87 (92)
                      +||.|+||+|++||+||+.++ |.|||++|+..++..
T Consensus         1 ~Is~P~nf~H~~HVg~d~~~g~~~glp~ew~~~l~~~   37 (59)
T PF00786_consen    1 DISNPTNFKHVAHVGWDPNTGGFTGLPPEWEKLLKSS   37 (59)
T ss_dssp             TB---EEEEEEEEEEEETTTTEEES--HHHHHHHHSC
T ss_pred             CCCCCCCCcceeeeccCCCccccccCCHHHHhhcccc
Confidence            599999999999999999887 569999999876543

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....

>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]

Probab=98.61  E-value=6.6e-09  Score=88.86  Aligned_cols=46  Identities=48%  Similarity=0.693  Sum_probs=43.6

Q ss_pred             hhcccceecCCcccceeeeeeeeCCCC---ccCCCccccccCCCCCCCC
Q 041607           46 SAVHNMEIGCPTNVRHITHATFDRFND---FLGLPVEFEVEVPCRVPSA   91 (92)
Q Consensus        46 ~~~~~MeIG~PTDVrHVaHVgfD~~nG---F~GLP~Ele~evp~~~psa   91 (92)
                      +++.+|+|++|+|+.|++|++||++.+   |+++|.|+++++||++|++
T Consensus        94 ~e~~~~kie~~~d~~~~~~~~f~~~~~~~~f~~~~~e~q~~~~rrals~  142 (577)
T KOG4270|consen   94 EEECGMKIEQPTDQRHADHVTFDRKEGEYLFLGLPVEFQPDYHRRALSA  142 (577)
T ss_pred             HHhhcCccccCcchhhhhhhhhhhhcchhhhccchhhhccccccccccc
Confidence            456889999999999999999999999   9999999999999999986

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.66  E-value=1.3e-05  Score=68.94  Aligned_cols=34  Identities=35%  Similarity=0.666  Sum_probs=31.0

Q ss_pred             cceecCCcccceeeeeeeeCC-CCccCCCcccccc
Q 041607           50 NMEIGCPTNVRHITHATFDRF-NDFLGLPVEFEVE   83 (92)
Q Consensus        50 ~MeIG~PTDVrHVaHVgfD~~-nGF~GLP~Ele~e   83 (92)
                      .-+|+.|+||+|.-|||||.. ..|+|||..|+.-
T Consensus        25 ~s~iS~P~nf~h~vHvGfd~~tg~ftGlP~~W~~L   59 (550)
T KOG0578|consen   25 KSEISSPSNFEHRVHVGFDPVTGEFTGLPKQWQRL   59 (550)
T ss_pred             CCccCCCCCccceeecccCCCcccccCCcHHHHHH
Confidence            579999999999999999995 6799999999874

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=97.24  E-value=0.00011  Score=63.72  Aligned_cols=39  Identities=28%  Similarity=0.413  Sum_probs=32.5

Q ss_pred             hhhcccceecCCcccceeeeeeeeCCCCccCCC--cccccc
Q 041607           45 ISAVHNMEIGCPTNVRHITHATFDRFNDFLGLP--VEFEVE   83 (92)
Q Consensus        45 ~~~~~~MeIG~PTDVrHVaHVgfD~~nGF~GLP--~Ele~e   83 (92)
                      .+..++-+|+.||+|.|+.||+||..+||..+|  .++.+.
T Consensus       228 ksk~tk~disaPtnf~h~~hVgwd~~~gf~~~~~p~~~dp~  268 (569)
T KOG3671|consen  228 KSKITKADISAPTNFPHIPHVGWDEQVGFDSAPAPNNNDPP  268 (569)
T ss_pred             ccccccccCCCCCCCccccccCCCcCCCcccCCCCCCCChh
Confidence            455578999999999999999999999999877  554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	92
2qme_I	36	CRIB domain of the serine/threonine-protein kinas;	2e-05
1f3m_A	80	Serine/threonine-protein kinase PAK-alpha; kinase	4e-05
2odb_B	35	Serine/threonine-protein kinase PAK 6; small GTPas	5e-05
2ov2_I	35	Serine/threonine-protein kinase PAK 4; GTPase RAC3	2e-04

>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens} Length = 36

 Score = 37.4 bits (87), Expect = 2e-05
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 52 EIGCPTNVRHITHATFDRFN-DFLGLPVEFE 81
          EI  P++  H  H  FD    +F G+P ++ 
Sbjct: 1  EISLPSDFEHTIHVGFDAVTGEFTGMPEQWA 31

>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B Length = 80

 Score = 37.6 bits (87), Expect = 4e-05
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 51 MEIGCPTNVRHITHATFD-RFNDFLGLPVEFE 81
           EI  P++  H  H  FD    +F G+P ++ 
Sbjct: 4  PEISLPSDFEHTIHVGFDAVTGEFTGMPEQWA 35

>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens} Length = 35

 Score = 36.2 bits (84), Expect = 5e-05
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 52 EIGCPTNVRHITHATFD-RFNDFLGLPVEFE 81
          EI  P N +H  H +FD +   F+GLP +++
Sbjct: 1  EISAPQNFQHRVHTSFDPKEGKFVGLPPQWQ 31

>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens} Length = 35

 Score = 34.7 bits (80), Expect = 2e-04
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 52 EIGCPTNVRHITHATFD-RFNDFLGLPVE 79
          EI  P+N  H  H  FD     F GLP +
Sbjct: 1  EISAPSNFEHRVHTGFDQHEQKFTGLPRQ 29

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	92
2qme_I	36	CRIB domain of the serine/threonine-protein kinas;	99.51
2odb_B	35	Serine/threonine-protein kinase PAK 6; small GTPas	99.49
2ov2_I	35	Serine/threonine-protein kinase PAK 4; GTPase RAC3	99.45
1f3m_A	80	Serine/threonine-protein kinase PAK-alpha; kinase	99.38
1cee_B	59	Wiskott-aldrich syndrome protein WAsp; CDC42 actin	99.38
2lnh_A	65	N-WAsp, neural wiskott-aldrich syndrome protein; p	98.79
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	98.61
1ej5_A	107	WAsp, wiskott-aldrich syndrome protein; alpha heli	98.53

>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}

Probab=99.51  E-value=3.8e-15  Score=85.38  Aligned_cols=33  Identities=30%  Similarity=0.637  Sum_probs=22.1

Q ss_pred             eecCCcccceeeeeeeeCCCC-ccCCCccccccC
Q 041607           52 EIGCPTNVRHITHATFDRFND-FLGLPVEFEVEV   84 (92)
Q Consensus        52 eIG~PTDVrHVaHVgfD~~nG-F~GLP~Ele~ev   84 (92)
                      +||.||||+||+|||||+.+| |.|||++|+.-+
T Consensus         1 ~Is~Ptnf~H~~Hvg~d~~tG~~~glp~~W~~ll   34 (36)
T 2qme_I            1 EISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLL   34 (36)
T ss_dssp             CBCCCEEEEEEEEECCBTTTTBCC----------
T ss_pred             CCcCCCCCCCeeEcccCCCCCcccCCCHHHHHHH
Confidence            699999999999999999888 999999998654

>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}

Probab=99.49  E-value=6e-15  Score=83.95  Aligned_cols=32  Identities=38%  Similarity=0.719  Sum_probs=29.9

Q ss_pred             eecCCcccceeeeeeeeCCCC-ccCCCcccccc
Q 041607           52 EIGCPTNVRHITHATFDRFND-FLGLPVEFEVE   83 (92)
Q Consensus        52 eIG~PTDVrHVaHVgfD~~nG-F~GLP~Ele~e   83 (92)
                      +||.||||+|++||+||+.+| |.|||++|+..
T Consensus         1 ~Is~Ptnf~H~~Hvg~d~~tG~f~Glp~eW~~l   33 (35)
T 2odb_B            1 EISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNI   33 (35)
T ss_dssp             CBCCCEEEEEEEEEEEETTTTEEESCCHHHHHH
T ss_pred             CCcCCCCCcCeeeeeECCCCCcccCCCHHHHHH
Confidence            699999999999999999988 99999999864

>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}

Probab=99.45  E-value=3.1e-14  Score=80.98  Aligned_cols=33  Identities=36%  Similarity=0.748  Sum_probs=30.2

Q ss_pred             eecCCcccceeeeeeeeCCCC-ccCCCccccccC
Q 041607           52 EIGCPTNVRHITHATFDRFND-FLGLPVEFEVEV   84 (92)
Q Consensus        52 eIG~PTDVrHVaHVgfD~~nG-F~GLP~Ele~ev   84 (92)
                      +||.||||+|+.||+||+..| |.|||++|+..+
T Consensus         1 ~IS~Ptnf~H~~Hvg~d~~tg~~~Glp~eW~~ll   34 (35)
T 2ov2_I            1 EISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLI   34 (35)
T ss_dssp             CBCCCEEEEEEEEEEEETTTTEEESCCGGGTTTC
T ss_pred             CCcCCCCCcCeeeeeeCCCCCcccCCCHHHHHHh
Confidence            699999999999999999776 999999998754

>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B

Probab=99.38  E-value=5.4e-14  Score=92.24  Aligned_cols=36  Identities=28%  Similarity=0.568  Sum_probs=27.3

Q ss_pred             ccceecCCcccceeeeeeeeCCCC-ccCCCccccccC
Q 041607           49 HNMEIGCPTNVRHITHATFDRFND-FLGLPVEFEVEV   84 (92)
Q Consensus        49 ~~MeIG~PTDVrHVaHVgfD~~nG-F~GLP~Ele~ev   84 (92)
                      .+++||.||||+||+|||||+..| |.|||++|+..+
T Consensus         2 ~~~~Is~Ptnf~H~~HVg~D~~tG~~~GlP~eW~~ll   38 (80)
T 1f3m_A            2 ERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLL   38 (80)
T ss_dssp             -------CCSSEEEEEEEEETTTTEEESCCHHHHHHH
T ss_pred             CCCccCCCCCCCCeeecccCCCCCccCCCCHHHHHHH
Confidence            368999999999999999999888 999999998765

>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}

Probab=99.38  E-value=8.3e-14  Score=86.57  Aligned_cols=36  Identities=25%  Similarity=0.525  Sum_probs=33.1

Q ss_pred             ccceecCCcccceeeeeeeeCCCCcc--CCCccccccC
Q 041607           49 HNMEIGCPTNVRHITHATFDRFNDFL--GLPVEFEVEV   84 (92)
Q Consensus        49 ~~MeIG~PTDVrHVaHVgfD~~nGF~--GLP~Ele~ev   84 (92)
                      .+|+||.||||+||+|||||+..||.  |||++|+..+
T Consensus         5 ~k~~Is~Ptnf~Hv~HvG~d~~~gf~~~g~pp~W~~ll   42 (59)
T 1cee_B            5 SKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLF   42 (59)
T ss_dssp             CTTTSCCCCCCEEEEEECCCTTTCCCCSSCCHHHHHHH
T ss_pred             CCCcccCCCCCCCcceeccCCCCCcccCCCCHHHHHHH
Confidence            46899999999999999999999998  9999998754

>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}

Probab=98.79  E-value=7e-10  Score=70.71  Aligned_cols=27  Identities=26%  Similarity=0.352  Sum_probs=24.3

Q ss_pred             cccceeeeeeeeCCCC--ccCCCcccccc
Q 041607           57 TNVRHITHATFDRFND--FLGLPVEFEVE   83 (92)
Q Consensus        57 TDVrHVaHVgfD~~nG--F~GLP~Ele~e   83 (92)
                      |||+||+|||||+..|  |.|||+||+.-
T Consensus         2 tnF~Hv~HVG~D~~tGf~~~glp~eW~~l   30 (65)
T 2lnh_A            2 SNFQHIGHVGWDPNTGFDLNNLDPELKNL   30 (65)
T ss_dssp             CCCSSCCSCCEETTTEECGGGCCTTHHHH
T ss_pred             CCCEeeeeeeeCCCCCcCCcCCCHHHHHH
Confidence            7999999999999997  58999999754

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=98.61  E-value=4.4e-09  Score=82.98  Aligned_cols=36  Identities=33%  Similarity=0.704  Sum_probs=0.0

Q ss_pred             ccceecCCcccceeeeeeeeCC-CCccCCCccccccC
Q 041607           49 HNMEIGCPTNVRHITHATFDRF-NDFLGLPVEFEVEV   84 (92)
Q Consensus        49 ~~MeIG~PTDVrHVaHVgfD~~-nGF~GLP~Ele~ev   84 (92)
                      ...+||.||||+|+.|||||+. .+|+|||.+|+..+
T Consensus         4 ~~~~is~p~n~~h~~hvg~d~~tg~f~glP~~W~~ll   40 (423)
T 4fie_A            4 KRVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLI   40 (423)
T ss_dssp             -------------------------------------
T ss_pred             CCCcccCCCCCCceeecCccCCCCCcccCCHHHHHHH
Confidence            3468999999999999999995 45999999997554

>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A

Probab=98.53  E-value=1e-08  Score=70.53  Aligned_cols=27  Identities=22%  Similarity=0.436  Sum_probs=25.1

Q ss_pred             cccceeeeeeeeCCCCcc--CCCcccccc
Q 041607           57 TNVRHITHATFDRFNDFL--GLPVEFEVE   83 (92)
Q Consensus        57 TDVrHVaHVgfD~~nGF~--GLP~Ele~e   83 (92)
                      |||+||+|||||+.+||.  |+|++|..-
T Consensus         1 tnF~Hv~HVG~D~~tGF~~~glppeWk~L   29 (107)
T 1ej5_A            1 SGFKHVSHVGWDPQNGFDVNNLDPDLRSL   29 (107)
T ss_dssp             CCCCCCCCCCCBTTTBCCTTTCCHHHHHH
T ss_pred             CCCCcceecccCCCCCcCCCCCCHHHHHH
Confidence            799999999999999999  999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	92
d1ej5a_	107	Wiscott-Aldrich syndrome protein, WASP, C-terminal	98.59

>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
superfamily: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
family: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
domain: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.7e-09  Score=72.59  Aligned_cols=27  Identities=19%  Similarity=0.363  Sum_probs=24.4

Q ss_pred             cccceeeeeeeeCCCC--ccCCCcccccc
Q 041607           57 TNVRHITHATFDRFND--FLGLPVEFEVE   83 (92)
Q Consensus        57 TDVrHVaHVgfD~~nG--F~GLP~Ele~e   83 (92)
                      |||+||+|||||+..|  |.|||++|+.-
T Consensus         1 snF~Hv~HVG~D~~tGf~~~glp~eW~~l   29 (107)
T d1ej5a_           1 SGFKHVSHVGWDPQNGFDVNNLDPDLRSL   29 (107)
T ss_dssp             CCCCCCCCCCCBTTTBCCTTTCCHHHHHH
T ss_pred             CCCeeeeeeeecCCCCccccCCCHHHHHH
Confidence            6999999999999998  58999999754