Citrus Sinensis ID: 041613

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
MLIHAPCQLDNSSSLPLYLQLIMLDEIKRTLERICNKNTEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVIL
cccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccEEc
ccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHcHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHccccHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccEEccccEcc
mlihapcqldnssslplYLQLIMLDEIKRTLERICNKNTEKSLYTVALKFRILRqygydtpvketfscfmdekgsfkssshgddcKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAkhdnnkhhnEYLCTLVNHALELPLHWRTRRLEARWFIDvyqsgpntnpilLDLAKLDFNIVQAVHQEDIKYASRWwkktglgerLNFARDRIMENFFWTVgvifepnfgycrRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAksynngyipTLQEYMENAWisisapvil
mlihapcqldnssslpLYLQLIMLDEIKRTLERicnkntekslytvALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKyasrwwkktglgERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVIL
MLIHAPCQLDNSSSLPLYLQLIMLDEIKRTLERICNKNTEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDDCKGMlalyeaayllVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVIL
*************SLPLYLQLIMLDEIKRTLERICNKNTEKSLYTVALKFRILRQYGYDTPVKETFSCFMDE**********DDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAP***
M******QLDNSSSLPLYLQLIMLDEIKRTLERICNKNTEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVIL
MLIHAPCQLDNSSSLPLYLQLIMLDEIKRTLERICNKNTEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEK**********DCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVIL
*LIHAPCQLDNSSSLPLYLQLIMLDEIKRTLERICNKNTEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVIL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLIHAPCQLDNSSSLPLYLQLIMLDEIKRTLERICNKNTEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query356 2.2.26 [Sep-21-2011]
Q8L5K4 600 Gamma-terpinene synthase, N/A no 0.932 0.553 0.840 1e-169
Q93X23 597 Myrcene synthase, chlorop N/A no 0.907 0.541 0.603 1e-113
Q6PWU2 590 (-)-alpha-terpineol synth no no 0.904 0.545 0.598 1e-111
B3TPQ7 592 Alpha-terpineol synthase, N/A no 0.901 0.542 0.562 1e-105
A7IZZ2 615 (+)-alpha-pinene synthase N/A no 0.893 0.517 0.524 3e-94
P0DI77 600 1,8-cineole synthase 2, c yes no 0.873 0.518 0.506 4e-92
P0DI76 600 1,8-cineole synthase 1, c yes no 0.873 0.518 0.506 4e-92
Q9LRZ6 598 Beta-myrcene/(E)-beta-oci no no 0.876 0.521 0.5 2e-90
Q9AR86 595 Isoprene synthase, chloro N/A no 0.904 0.541 0.479 2e-87
Q7XAS7 595 Isoprene synthase, chloro N/A no 0.904 0.541 0.479 4e-87
>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1 Back     alignment and function desciption
 Score =  594 bits (1532), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 279/332 (84%), Positives = 302/332 (90%)

Query: 25  DEIKRTLERICNKNTEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDD 84
           DEIKRTL+RI NKNT KSLY  ALKFRILRQYGY TPVKETFS FMDEKGSFK SSH D+
Sbjct: 130 DEIKRTLDRIHNKNTNKSLYARALKFRILRQYGYKTPVKETFSRFMDEKGSFKLSSHSDE 189

Query: 85  CKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALEL 144
           CKGMLALYEAAYLLVE ESSIFRDAI FTTAYLKEW AKHD +K+ NEYLCTLV HALEL
Sbjct: 190 CKGMLALYEAAYLLVEEESSIFRDAIRFTTAYLKEWVAKHDIDKNDNEYLCTLVKHALEL 249

Query: 145 PLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLG 204
           PLHWR RRLEARWFIDVY+SGP+ NPILL+LAK+D+NIVQAVHQED+KY SRWWKKTGLG
Sbjct: 250 PLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAVHQEDLKYVSRWWKKTGLG 309

Query: 205 ERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFT 264
           E+LNFARDR++ENFFWTVG IFEP FGYCRRMS MVN L+T+IDDVYDVYGTLDELELFT
Sbjct: 310 EKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFT 369

Query: 265 DAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTY 324
           DAVERWD TT EQLP YMKLCFHAL+NS+NEM F ALRDQ VGM+I YLKKAWAD CK+Y
Sbjct: 370 DAVERWDATTTEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSY 429

Query: 325 LVEAKSYNNGYIPTLQEYMENAWISISAPVIL 356
           LVEAK YN+GYIPTLQEYMENAWIS++APV+L
Sbjct: 430 LVEAKWYNSGYIPTLQEYMENAWISVTAPVML 461
Monoterpene synthase which catalyzes the conversion of geranyl diphosphate to gamma-terpinene and the minor products limonene, alpha-pinene, beta-pinene, alpha-terpinolene, alpha-thujene, alpha-terpinene, myrcene and sabinene.
Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 1EC: 1EC: 4
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function description
>sp|A7IZZ2|TPS2_CANSA (+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|P0DI77|CIN2_ARATH 1,8-cineole synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS23 PE=1 SV=1 Back     alignment and function description
>sp|P0DI76|CIN1_ARATH 1,8-cineole synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1 Back     alignment and function description
>sp|Q9LRZ6|MYRS2_ARATH Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=1 SV=1 Back     alignment and function description
>sp|Q9AR86|ISPS_POPCN Isoprene synthase, chloroplastic OS=Populus canescens GN=ISPS PE=1 SV=1 Back     alignment and function description
>sp|Q7XAS7|ISPS_POPTM Isoprene synthase, chloroplastic OS=Populus tremuloides GN=ISPS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
61161981 602 monoterpene synthase [Citrus unshiu] 0.932 0.551 0.918 1e-180
75245637 600 RecName: Full=Gamma-terpinene synthase, 0.932 0.553 0.840 1e-167
322424199 602 pinene synthase [Citrus hystrix] 0.932 0.551 0.840 1e-166
49659441 600 gamma-terpinene synthase [Citrus unshiu] 0.932 0.553 0.828 1e-166
49659443 602 beta-pinene synthase [Citrus unshiu] 0.932 0.551 0.840 1e-166
21435705 602 (-)-beta-pinene synthase [Citrus limon] 0.932 0.551 0.840 1e-165
49659439 600 gamma-terpinene synthase [Citrus unshiu] 0.932 0.553 0.822 1e-163
152962686 602 beta-pinene synthase [Citrus jambhiri] 0.932 0.551 0.825 1e-162
61161985 617 (E)-beta-ocimene synthase [Citrus unshiu 0.912 0.526 0.656 1e-126
224126695 548 predicted protein [Populus trichocarpa] 0.912 0.593 0.634 1e-118
>gi|61161981|dbj|BAD91045.1| monoterpene synthase [Citrus unshiu] Back     alignment and taxonomy information
 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 305/332 (91%), Positives = 313/332 (94%)

Query: 25  DEIKRTLERICNKNTEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDD 84
           DEIKRTL+RI NKNT KSLY  ALKFRILRQYGY+TPVKETFS FMDEKGSFK SSH DD
Sbjct: 130 DEIKRTLDRIHNKNTNKSLYARALKFRILRQYGYNTPVKETFSRFMDEKGSFKLSSHSDD 189

Query: 85  CKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALEL 144
           CKGMLALYEAAYLLVE ESSIFRDAI FTTAYLKEW  KHD +K+ +EYLCTLV HALEL
Sbjct: 190 CKGMLALYEAAYLLVEEESSIFRDAIRFTTAYLKEWVVKHDIDKNDDEYLCTLVKHALEL 249

Query: 145 PLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLG 204
           PLHWR RRLEARWFIDVY+SGP+ NPILLDLAKLDFNIVQAVHQEDIKYASRWWKK GLG
Sbjct: 250 PLHWRMRRLEARWFIDVYESGPDMNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKIGLG 309

Query: 205 ERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFT 264
           ERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFT
Sbjct: 310 ERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFT 369

Query: 265 DAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTY 324
           DAVERWD TTIEQLP+YMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTY
Sbjct: 370 DAVERWDATTIEQLPDYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTY 429

Query: 325 LVEAKSYNNGYIPTLQEYMENAWISISAPVIL 356
           LVEAK YNNGYIPTLQEYMENAWISISAPVIL
Sbjct: 430 LVEAKWYNNGYIPTLQEYMENAWISISAPVIL 461

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|75245637|sp|Q8L5K4.1|GTPS_CITLI RecName: Full=Gamma-terpinene synthase, chloroplastic; Short=ClgammaTS; Flags: Precursor gi|21435701|gb|AAM53943.1|AF514286_1 gamma-terpinene synthase [Citrus limon] Back     alignment and taxonomy information
>gi|322424199|gb|ADX01381.1| pinene synthase [Citrus hystrix] Back     alignment and taxonomy information
>gi|49659441|dbj|BAD27259.1| gamma-terpinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|49659443|dbj|BAD27260.1| beta-pinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|21435705|gb|AAM53945.1|AF514288_1 (-)-beta-pinene synthase [Citrus limon] Back     alignment and taxonomy information
>gi|49659439|dbj|BAD27258.1| gamma-terpinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|152962686|dbj|BAF73933.1| beta-pinene synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|61161985|dbj|BAD91046.1| (E)-beta-ocimene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|224126695|ref|XP_002329450.1| predicted protein [Populus trichocarpa] gi|222870130|gb|EEF07261.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
UNIPROTKB|Q8L5K4 600 Q8L5K4 "Gamma-terpinene syntha 0.932 0.553 0.810 1.3e-148
UNIPROTKB|B3TPQ7 592 B3TPQ7 "Alpha-terpineol syntha 0.901 0.542 0.544 9e-93
TAIR|locus:2829283 600 TPS-CIN ""terpene synthase-lik 0.910 0.54 0.476 2.4e-83
TAIR|locus:2086014 600 TPS-CIN ""terpene synthase-lik 0.910 0.54 0.476 2.4e-83
TAIR|locus:2086004 598 AT3G25810 [Arabidopsis thalian 0.876 0.521 0.481 5.8e-82
UNIPROTKB|Q8GUE4 603 GerS "Geraniol synthase, chlor 0.921 0.543 0.463 1.1e-78
UNIPROTKB|Q9SPN1 583 QH5 "R-linalool synthase QH5, 0.842 0.514 0.496 2.3e-78
UNIPROTKB|Q9SPN0 567 QH1 "R-linalool synthase QH1, 0.926 0.582 0.478 1.3e-77
UNIPROTKB|Q50L36 595 ISPS "Isoprene synthase, chlor 0.867 0.519 0.484 3.4e-77
UNIPROTKB|J7LQ09 542 J7LQ09 "Trans-alpha-bergamoten 0.901 0.592 0.451 3.1e-76
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms
 Score = 1451 (515.8 bits), Expect = 1.3e-148, P = 1.3e-148
 Identities = 269/332 (81%), Positives = 292/332 (87%)

Query:    25 DEIKRTLERICNKNTEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDD 84
             DEIKRTL+RI NKNT KSLY  ALKFRILRQYGY TPVKETFS FMDEKGSFK SSH D+
Sbjct:   130 DEIKRTLDRIHNKNTNKSLYARALKFRILRQYGYKTPVKETFSRFMDEKGSFKLSSHSDE 189

Query:    85 CKGMXXXXXXXXXXVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALEL 144
             CKGM          VE ESSIFRDAI FTTAYLKEW AKHD +K+ NEYLCTLV HALEL
Sbjct:   190 CKGMLALYEAAYLLVEEESSIFRDAIRFTTAYLKEWVAKHDIDKNDNEYLCTLVKHALEL 249

Query:   145 PLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLG 204
             PLHWR RRLEARWFIDVY+SGP+ NPILL+LAK+D+NIVQAVHQED+KY SRWWKKTGLG
Sbjct:   250 PLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAVHQEDLKYVSRWWKKTGLG 309

Query:   205 ERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFT 264
             E+LNFARDR++ENFFWTVG IFEP FGYCRRMS MVN L+T+IDDVYDVYGTLDELELFT
Sbjct:   310 EKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFT 369

Query:   265 DAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTY 324
             DAVERWD TT EQLP YMKLCFHAL+NS+NEM F ALRDQ VGM+I YLKKAWAD CK+Y
Sbjct:   370 DAVERWDATTTEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSY 429

Query:   325 LVEAKSYNNGYIPTLQEYMENAWISISAPVIL 356
             LVEAK YN+GYIPTLQEYMENAWIS++APV+L
Sbjct:   430 LVEAKWYNSGYIPTLQEYMENAWISVTAPVML 461
GO:0000287 "magnesium ion binding" evidence=IDA
GO:0010333 "terpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
TAIR|locus:2829283 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086014 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086004 AT3G25810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SPN1 QH5 "R-linalool synthase QH5, chloroplastic" [Artemisia annua (taxid:35608)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SPN0 QH1 "R-linalool synthase QH1, chloroplastic" [Artemisia annua (taxid:35608)] Back     alignment and assigned GO terms
UNIPROTKB|Q50L36 ISPS "Isoprene synthase, chloroplastic" [Populus alba (taxid:43335)] Back     alignment and assigned GO terms
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_scaffold_117000002
hypothetical protein (548 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-153
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 6e-78
cd00868 284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 5e-66
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 4e-36
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 5e-36
cd00385 243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 2e-22
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 3e-17
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  442 bits (1139), Expect = e-153
 Identities = 168/338 (49%), Positives = 218/338 (64%), Gaps = 13/338 (3%)

Query: 25  DEIKRTLERICNKNTEK------SLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKS 78
           DEIK  L+ I    TE+       LYT AL FR+LRQ+GY+    + F  F DE G FK 
Sbjct: 74  DEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSS-DVFKKFKDEDGKFKE 132

Query: 79  SSHGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLV 138
           S    D KGML+LYEA++L   GE  I  +A+SFTT +L+E    +         L   +
Sbjct: 133 SLT-QDVKGMLSLYEASHLSFPGED-ILDEALSFTTKHLEEKLESNWIIDPD---LSGEI 187

Query: 139 NHALELPLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWW 198
            +ALE+PLH    RLEARW+I+ Y+   + N  LL+LAKLDFNI+QA+HQE++K  SRWW
Sbjct: 188 EYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWW 247

Query: 199 KKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLD 258
           K   L  +L FARDR++E +FW  G  FEP +   R       ALIT IDD YDVYGTL+
Sbjct: 248 KDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLE 307

Query: 259 ELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWA 318
           ELELFT+AVERWD + I+QLP YMK+ F AL N++NE+  + L++ G   V+ YLK+AW 
Sbjct: 308 ELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGS-YVVPYLKEAWK 366

Query: 319 DICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVIL 356
           D+ K YLVEAK  + GY+PT +EYMENA +SI    +L
Sbjct: 367 DLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLL 404

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 356
cd00684 542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279 784 ent-kaur-16-ene synthase 100.0
PLN02592 800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868 284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 99.96
cd00687 303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 99.6
cd00385 243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 98.94
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=3.3e-115  Score=903.00  Aligned_cols=344  Identities=49%  Similarity=0.793  Sum_probs=333.5

Q ss_pred             cccccccccccc-cccccccHHHHHHHHHHHHhcCC------CCchhHHHHHHHHHHhcCCCCCcccccccccCCCcccc
Q 041613            5 APCQLDNSSSLP-LYLQLIMLDEIKRTLERICNKNT------EKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFK   77 (356)
Q Consensus         5 ~~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy~~~~------~~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~~G~F~   77 (356)
                      ...||..||.|+ |||+|||++||+++|++||+++.      ..||++|||+|||||||||+||| |||++|||++|+|+
T Consensus        53 ~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~-dvf~~F~~~~g~f~  131 (542)
T cd00684          53 LFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSS-DVFKKFKDEDGKFK  131 (542)
T ss_pred             HHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCH-HHHhhhcCCCCCcC
Confidence            346899999998 99999999999999999999864      36999999999999999999999 99999999999999


Q ss_pred             cCCCCCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhccCcccCCchhHHHHH
Q 041613           78 SSSHGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARW  157 (356)
Q Consensus        78 ~~~~~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~  157 (356)
                      ++ +.+||+||||||||||+++||| .|||||++||++||++.++++   +.++++|+++|++||++|||+++||||||+
T Consensus       132 ~~-~~~d~~g~l~Ly~As~l~~~gE-~iLdeA~~ft~~~L~~~~~~~---~~~~~~l~~~V~~aL~~P~~~~~~rlear~  206 (542)
T cd00684         132 ES-LTQDVKGMLSLYEASHLSFPGE-DILDEALSFTTKHLEEKLESN---WIIDPDLSGEIEYALEIPLHASLPRLEARW  206 (542)
T ss_pred             ch-hhhhhHHHHHHHHHhhcCCCCc-HHHHHHHHHHHHHHHHHhhcc---CCCCchHHHHHHHHccCchhcCCchHHHHH
Confidence            99 9999999999999999999999 999999999999999998764   346889999999999999999999999999


Q ss_pred             hHHHhcCCCCCChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchhhhH
Q 041613          158 FIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMS  237 (356)
Q Consensus       158 yI~~Y~~~~~~n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R~~~  237 (356)
                      ||++|++++++|++||||||+|||+||++||+||++++|||+++||.++|||+|+|++|||||++|++|||++|.+|+++
T Consensus       207 yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~  286 (542)
T cd00684         207 YIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIAL  286 (542)
T ss_pred             HHHHhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHH
Q 041613          238 TMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAW  317 (356)
Q Consensus       238 aK~~~l~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w  317 (356)
                      ||++++++++||+||+|||+|||+.||+||+|||.+++++||+|||+||.+|+++++|+++++.+.+|++ ++++++++|
T Consensus       287 aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~-~~~~~~~~~  365 (542)
T cd00684         287 AKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSY-VVPYLKEAW  365 (542)
T ss_pred             HHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHhHccCCCCCChHHHHhhhhhhcccccc
Q 041613          318 ADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVI  355 (356)
Q Consensus       318 ~~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~~~~~~  355 (356)
                      +++++||++||+|+++||+||++|||+|+.+|+|++++
T Consensus       366 ~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~  403 (542)
T cd00684         366 KDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPL  403 (542)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHH
Confidence            99999999999999999999999999999999998874

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 3e-84
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 7e-81
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 1e-77
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-76
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 5e-56
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-53
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 4e-53
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 4e-53
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 7e-53
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 7e-53
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 7e-53
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 7e-53
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 2e-51
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 2e-51
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 7e-51
3s9v_A 785 Abietadiene Synthase From Abies Grandis Length = 78 2e-45
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 2e-42
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 2e-07
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure 
Iteration: 1

 Score =  308 bits (789), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 156/336 (46%), Positives = 219/336 (65%), Gaps = 14/336 (4%)
Query: 26  EIKRTLERICNKN-----TEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSS 80
           +I+R L+R  +       T+ SL+  AL FR+LRQ+G++   +E FS F D+ G+F  + 
Sbjct: 86  DIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVS-QEAFSGFKDQNGNFLENL 144
Query: 81  HGDDCKGMXXXXXXXXXXVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNH 140
             +D K +          +EGE+ I  +A  F  ++LKE + +    +     L   VNH
Sbjct: 145 K-EDTKAILSLYEASFLALEGEN-ILDEARVFAISHLKELSEEKIGKE-----LAEQVNH 197
Query: 141 ALELPLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKK 200
           ALELPLH RT+RLEA W I+ Y+   + N +LL+LA LD+N++Q+V+Q D++  SRWW++
Sbjct: 198 ALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRR 257
Query: 201 TGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDEL 260
            GL  +L+FARDR++E+F+W VGV FEP +  CR     + + +T IDD+YDVYGTLDEL
Sbjct: 258 VGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDEL 317
Query: 261 ELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADI 320
           ELFTDAVERWD   I  LP+YMKLCF AL+N+INE+A+D L+D+G   ++ YL KAWAD+
Sbjct: 318 ELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGEN-ILPYLTKAWADL 376
Query: 321 CKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVIL 356
           C  +L EAK   N   PT  +Y  NAW S S P+ L
Sbjct: 377 CNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQL 412
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 1e-103
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-102
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-100
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 1e-100
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 8e-99
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 3e-97
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 4e-86
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 9e-86
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 2e-83
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 4e-83
3kb9_A 382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 8e-17
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 9e-16
3bny_A 320 Aristolochene synthase; sesquiterpene cyclase, iso 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
 Score =  313 bits (802), Expect = e-103
 Identities = 157/335 (46%), Positives = 216/335 (64%), Gaps = 11/335 (3%)

Query: 25  DEIKRTLERICNKNT---EKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSH 81
            EI   L      N    E+ LY+ AL+FR+LRQY +    +E F CF + KG+    S 
Sbjct: 104 REIVEILNSKYYTNNEIDERDLYSTALRFRLLRQYDFSVS-QEVFDCFKNAKGTDFKPSL 162

Query: 82  GDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHA 141
            DD +G+L LYEA++L  +GE    R A  F T +L++      +       L + +  A
Sbjct: 163 VDDTRGLLQLYEASFLSAQGEE-TLRLARDFATKFLQKRVLVDKDI-----NLLSSIERA 216

Query: 142 LELPLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKT 201
           LELP HWR +   AR FID Y+  P+ NP +L+LAKLDFN+VQA  Q+++K ASRWW  T
Sbjct: 217 LELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNST 276

Query: 202 GLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELE 261
           GL   L F RDRI+E ++WT GV+     GY R M T +NAL+TTIDDV+D+YGTL+EL+
Sbjct: 277 GLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQ 336

Query: 262 LFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADIC 321
           LFT A++RWD  +++QLP YM++C+ AL N +NEMA+D LRD+G      YL+K W  + 
Sbjct: 337 LFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGF-DSTPYLRKVWVGLI 395

Query: 322 KTYLVEAKSYNNGYIPTLQEYMENAWISISAPVIL 356
           ++YL+EAK Y  G+ P+L+EYM+N+WISI    IL
Sbjct: 396 ESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPIL 430
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 100.0
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 99.97
1di1_A 300 Aristolochene synthase; sesquiterpene cyclase, iso 99.97
3bny_A 320 Aristolochene synthase; sesquiterpene cyclase, iso 99.97
3kb9_A 382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 99.93
3v1v_A 433 2-MIB synthase, 2-methylisoborneol synthase; class 99.19
1yyq_A 374 Trichodiene synthase; terpenoid cyclase fold, site 92.86
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-125  Score=978.17  Aligned_cols=342  Identities=48%  Similarity=0.860  Sum_probs=331.1

Q ss_pred             cccccccccccc-cccccccHHHHHHHHHHHHhc-----CCCCchhHHHHHHHHHHhcCCCCCcccccccccCCCccccc
Q 041613            5 APCQLDNSSSLP-LYLQLIMLDEIKRTLERICNK-----NTEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKS   78 (356)
Q Consensus         5 ~~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy~~-----~~~~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~~G~F~~   78 (356)
                      ...||..||.|+ |||+|||++||+++|++||+.     +...||++|||+|||||||||+||| |||++|+|++|+|++
T Consensus        64 ~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~DL~~~Al~FRLLR~hGy~VS~-dvF~~F~d~~G~F~~  142 (555)
T 3n0f_A           64 FLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQ-EAFSGFKDQNGNFLE  142 (555)
T ss_dssp             HHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHTCHHHHHTTTCHHHHHHHHHHHHHTTCCCCG-GGGGGGBCTTSCBCG
T ss_pred             HHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHhcCCCcCh-HHHhcccccCccchh
Confidence            357899999999 999999999999999999984     3457999999999999999999999 999999999999999


Q ss_pred             CCCCCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhccCcccCCchhHHHHHh
Q 041613           79 SSHGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARWF  158 (356)
Q Consensus        79 ~~~~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~y  158 (356)
                      + +.+||+||||||||||+++||| +|||+|++||++||++.+..+     ++++|+++|+|||++|||+++||||||+|
T Consensus       143 ~-l~~dv~glL~LYeAs~l~~~gE-~iLdeA~~Fs~~~L~~~~~~~-----~~~~l~~~V~~aL~~P~~~~l~Rlear~y  215 (555)
T 3n0f_A          143 N-LKEDTKAILSLYEASFLALEGE-NILDEARVFAISHLKELSEEK-----IGKELAEQVNHALELPLHRRTQRLEAVWS  215 (555)
T ss_dssp             G-GGGCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHTCCHHH-----HCHHHHHHHHHHHHSCTTTSCHHHHHHHH
T ss_pred             h-hhhhhHHHHHHHHHHhcccCCc-HHHHHHHHHHHHHHHHHHhcc-----CCchHHHHHHHHhcCCcccCchHHHHHHH
Confidence            9 9999999999999999999999 999999999999999876531     67889999999999999999999999999


Q ss_pred             HHHhcCCCCCChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchhhhHH
Q 041613          159 IDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMST  238 (356)
Q Consensus       159 I~~Y~~~~~~n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R~~~a  238 (356)
                      |++|++++++|++||||||||||+||++||+||++|+||||++||+++|||||||+||||||++|++||||||.+|++||
T Consensus       216 I~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~a  295 (555)
T 3n0f_A          216 IEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVA  295 (555)
T ss_dssp             HHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHH
T ss_pred             HHHhcccccccHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHH
Q 041613          239 MVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWA  318 (356)
Q Consensus       239 K~~~l~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~  318 (356)
                      |+++|+|++||+||+|||+|||++||+||+|||++++++||+|||+||.+|++++||+++++.++||++ +++|++++|+
T Consensus       296 K~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~-~~~~l~~~w~  374 (555)
T 3n0f_A          296 KMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGEN-ILPYLTKAWA  374 (555)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHHHHhHccCCCCCChHHHHhhhhhhcccccc
Q 041613          319 DICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVI  355 (356)
Q Consensus       319 ~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~~~~~~  355 (356)
                      ++|+||++||||+++||+||+||||+||++|+|++++
T Consensus       375 ~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l  411 (555)
T 3n0f_A          375 DLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQ  411 (555)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHH
Confidence            9999999999999999999999999999999998865
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 356
d1n1ba2 328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 3e-82
d5easa2 328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 4e-78
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 7e-42
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 4e-39
d1ps1a_ 311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 5e-24
d1di1a_ 300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 9e-18
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  251 bits (642), Expect = 3e-82
 Identities = 92/188 (48%), Positives = 134/188 (71%), Gaps = 1/188 (0%)

Query: 169 NPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEP 228
           NP++ +LAKL+FNI+QA HQ+++K  SRWW +    E+L F RDR++E+FFW VG+    
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 229 NFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHA 288
             GY R+M+  +  L T IDD+YDVYGTLDELELFTD  +RWDT +I +LP YM+LC+  
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 289 LHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWI 348
           +HN I++ A+D L++ G    + YL+K+  D+ + Y  EAK Y++GY P+L EY+  A I
Sbjct: 122 VHNYISDAAYDILKEHGF-FCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKI 180

Query: 349 SISAPVIL 356
           S+++P I+
Sbjct: 181 SVASPAII 188
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
d1n1ba2 328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2 328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_ 311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 99.69
d1di1a_ 300 Aristolochene synthase {Fungus (Penicillium roquef 99.14
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=2.5e-72  Score=547.07  Aligned_cols=187  Identities=49%  Similarity=0.958  Sum_probs=184.4

Q ss_pred             CChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchhhhHHHHHHHHHhh
Q 041613          168 TNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTI  247 (356)
Q Consensus       168 ~n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R~~~aK~~~l~tvi  247 (356)
                      +|++||||||+|||+||++||+||++|+|||+++||+++|||||||+||||||++|++||||||.+|++|||+++|+|++
T Consensus         1 ~N~~lLelAKlDFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~ii   80 (328)
T d1n1ba2           1 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVI   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhh
Confidence            59999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHHHH
Q 041613          248 DDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVE  327 (356)
Q Consensus       248 DD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~~a~l~E  327 (356)
                      ||+||+|||+|||++||+||+|||+++++.||+|||+||.+|+++++|++.++.+.||++ +++|+|++|+++++||++|
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~~-~~~~lk~~w~~l~~ayl~E  159 (328)
T d1n1ba2          81 DDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFF-CLQYLRKSVVDLVEAYFHE  159 (328)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhcccCCHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HhHccCCCCCChHHHHhhhhhhcccccc
Q 041613          328 AKSYNNGYIPTLQEYMENAWISISAPVI  355 (356)
Q Consensus       328 AkW~~~~~~Pt~eEYl~n~~iS~~~~~~  355 (356)
                      |||+++||+||+||||+||.+|+|++++
T Consensus       160 akW~~~g~vPt~eEYl~~~~vS~~~~~l  187 (328)
T d1n1ba2         160 AKWYHSGYTPSLDEYLNIAKISVASPAI  187 (328)
T ss_dssp             HHHHHHTCCCCHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhcCCCCCHHHHHhhceehhhHHHH
Confidence            9999999999999999999999998765
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure