Citrus Sinensis ID: 041616

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
MTNNVGKDVVRYKVTDPGDDTINPKPGTLRYEAILIPQKVWTTYRKHMNITLHKLRKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIGKANLKYTEEQKCQVANAKSMRSLTSELRVSKCSRRSRC
cccccccccEEEEEEcccccccccccccEEEEEEEEcccEEEEEEEcEEEEEcccccccccEEEEEEcccEEEEccEEEEEcccEEEEEEccccEEEEccEEEcccccEEEccccccccccccEEEEEcccccccccccccEEcccEEEEEccEEEccccEEEcccccEEEEEEcEEEccccccEEcccccccccccccccc
cccccccccEEEEEEcccccccccccccEEEEEEEEcccEEEEEEcccEEEEEccEEccccEEEEEccccEEEEcccccccccccEEEEEccccEEEEccccccccEEEEEccccccccccccEEEEEEccccccccEccccccEEEEEEEEcccccEEEEEEcccccccEccccccccccccccEEEEEcccccHHHcccc
mtnnvgkdvvrykvtdpgddtinpkpgtlryeaILIPQKVWTTYRKHMNITLHKLRKIDRDAIRLVIALKVWIDhntlykcqnglidvtrgstdvtisnnwfrnqdkikllghddgyirdkNMKMTIAYNHFgrncnqrmprvrHGFAHVINNLYRKWTQYTIGKANLKYTEEQKCQVANAKSMRSLTSElrvskcsrrsrc
mtnnvgkdvvrykvtdpgddtinpkpgtlryeAILIPQKVWTTYRKHMNITLHKLRKIDRDAIRLVIALKVWIDHNTLYKCQNGlidvtrgstdvtisnnwfrnqdkikllghddgyiRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIGKANLKYTEEQKCQVanaksmrsltselrvskcsrrsrc
MTNNVGKDVVRYKVTDPGDDTINPKPGTLRYEAILIPQKVWTTYRKHMNITLHKLRKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIGKANLKYTEEQKCQVANAKSMRSLTSELRVSKCSRRSRC
***********Y*************PGTLRYEAILIPQKVWTTYRKHMNITLHKLRKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIGKANLKYTEE*****************************
*****GKDVVRYKVTDPGDDTINPKPGTLRYEAILIPQKVWTTYRKHMNITLHKLRKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIGKANLKYTEEQKCQVANAKSMRSLTSELRVSK**RR**C
MTNNVGKDVVRYKVTDPGDDTINPKPGTLRYEAILIPQKVWTTYRKHMNITLHKLRKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIGKANLKYTEEQKCQVANA*********************
****VGKDVVRYKVTDPGDDTINPKPGTLRYEAILIPQKVWTTYRKHMNITLHKLRKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIGKANLKYTEEQKCQVANAKSMRSLTSELRVS********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTNNVGKDVVRYKVTDPGDDTINPKPGTLRYEAILIPQKVWTTYRKHMNITLHKLRKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIGKANLKYTEEQKCQVANAKSMRSLTSELRVSKCSRRSRC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query202 2.2.26 [Sep-21-2011]
Q9C8G4368 Probable pectate lyase 4 no no 0.955 0.524 0.363 2e-36
Q93Z25432 Probable pectate lyase 22 no no 0.792 0.370 0.369 1e-34
Q9LRM5452 Probable pectate lyase 9 no no 0.915 0.409 0.345 4e-34
Q944R1470 Probable pectate lyase 15 no no 0.792 0.340 0.351 4e-34
Q9FM66392 Putative pectate lyase 21 no no 0.762 0.392 0.376 2e-33
Q940Q1431 Probable pectate lyase 1 no no 0.871 0.408 0.348 1e-32
Q9M8Z8416 Probable pectate lyase 8 no no 0.797 0.387 0.352 9e-32
Q9LLT1367 Major pollen allergen Jun N/A no 0.801 0.441 0.367 3e-31
P18632374 Sugi basic protein OS=Cry N/A no 0.539 0.291 0.559 6e-31
O24554401 Pectate lyase OS=Zinnia e N/A no 0.524 0.264 0.537 9e-31
>sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1 Back     alignment and function desciption
 Score =  152 bits (383), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/242 (36%), Positives = 122/242 (50%), Gaps = 49/242 (20%)

Query: 6   GKDVVRYKVTDPGDDTINPKPGTLRYEAILIPQKVWTTYRKHMNITLH------------ 53
           GK+   Y VT+P D+   P PGTLRY A+  P+ +W T+ + M I L             
Sbjct: 69  GKNGPIYVVTNPSDNPTRPSPGTLRY-AVSQPKPLWITFARDMVIVLKSQLMINSYKTID 127

Query: 54  --------------KLRKI--------------------DRDAIRLVIALKVWIDHNTLY 79
                         ++R++                    D D IR+  +  VWIDH  L 
Sbjct: 128 GRGAKVEIANGPCLRIRQVKHVIIHGISIHDCKADPNGMDGDGIRVFQSTHVWIDHCFLS 187

Query: 80  KCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQR 139
           +C +GLIDV   ST VTISNN+F   DK+ LLGHDD Y+ DK+M++TIA+N FG    +R
Sbjct: 188 RCHDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMGDKDMRVTIAFNTFGPGLIER 247

Query: 140 MPRVRHGFAHVINNLYRKWTQYTIGKA--NLKYTEEQKCQVANAKSMRSLTSELRVSKCS 197
           MPRVR G+AHV NN Y KW  Y IG +   + ++E         +S + +T  +     S
Sbjct: 248 MPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVAPEKRSSKQVTKRMMAGPDS 307

Query: 198 RR 199
           +R
Sbjct: 308 KR 309

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q9LRM5|PLY9_ARATH Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|Q9FM66|PLY21_ARATH Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=3 SV=1 Back     alignment and function description
>sp|Q940Q1|PLY1_ARATH Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q9LLT1|MPAJ1_JUNVI Major pollen allergen Jun v 1 OS=Juniperus virginiana PE=1 SV=1 Back     alignment and function description
>sp|P18632|SBP_CRYJA Sugi basic protein OS=Cryptomeria japonica PE=1 SV=2 Back     alignment and function description
>sp|O24554|PLY_ZINEL Pectate lyase OS=Zinnia elegans PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
255572844 313 Major pollen allergen Jun v 1 precursor, 0.821 0.530 0.530 6e-61
356546071 370 PREDICTED: probable pectate lyase 8-like 0.821 0.448 0.522 1e-60
224075998 352 predicted protein [Populus trichocarpa] 0.821 0.471 0.508 1e-58
356495431289 PREDICTED: LOW QUALITY PROTEIN: probable 0.821 0.574 0.513 3e-58
356540726 320 PREDICTED: probable pectate lyase 8-like 0.821 0.518 0.513 6e-58
357457961 373 Major pollen allergen-like protein [Medi 0.821 0.445 0.491 6e-57
297737200 320 unnamed protein product [Vitis vinifera] 0.930 0.587 0.453 1e-56
359489940 395 PREDICTED: probable pectate lyase 4-like 0.930 0.475 0.453 1e-56
357518457 392 Major pollen allergen-like protein [Medi 0.821 0.423 0.486 8e-56
357518441 392 Major pollen allergen-like protein [Medi 0.821 0.423 0.486 2e-55
>gi|255572844|ref|XP_002527354.1| Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] gi|223533273|gb|EEF35026.1| Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 142/226 (62%), Gaps = 60/226 (26%)

Query: 1   MTNNVGKDVVRYKVTDPGDDTINPKPGTLRYEAILIPQKVWTTYRKHMN----------- 49
           MTNN+GK V  YKVTDP DD +NPKPGTLRY A +I  KVW T++++MN           
Sbjct: 60  MTNNIGKSVTPYKVTDPSDDPLNPKPGTLRYGATMIDGKVWITFKRNMNINLRKPLLISS 119

Query: 50  --------------------------ITLHKLR-----------------------KIDR 60
                                     + +H LR                       ++D 
Sbjct: 120 FTTLDGRGVDVHISGNACLLVYKATDVIIHGLRIHHCKAVGPSSVRGPNGQIVPLGQMDG 179

Query: 61  DAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYIRD 120
           DAIRLV A KVWIDHNTLY CQ+GL+DVTRGSTDVTISNNWF++QDK+ LLGHDDGYIRD
Sbjct: 180 DAIRLVSASKVWIDHNTLYACQDGLLDVTRGSTDVTISNNWFKDQDKVMLLGHDDGYIRD 239

Query: 121 KNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIGKA 166
           KNMK+T+ +NHFG NCNQRMPRVRHG+AHV NNLY+ W QY IG +
Sbjct: 240 KNMKVTVVFNHFGPNCNQRMPRVRHGYAHVTNNLYQGWQQYAIGGS 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356546071|ref|XP_003541455.1| PREDICTED: probable pectate lyase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|224075998|ref|XP_002304865.1| predicted protein [Populus trichocarpa] gi|222842297|gb|EEE79844.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356495431|ref|XP_003516581.1| PREDICTED: LOW QUALITY PROTEIN: probable pectate lyase 9-like [Glycine max] Back     alignment and taxonomy information
>gi|356540726|ref|XP_003538836.1| PREDICTED: probable pectate lyase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|357457961|ref|XP_003599261.1| Major pollen allergen-like protein [Medicago truncatula] gi|355488309|gb|AES69512.1| Major pollen allergen-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297737200|emb|CBI26401.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359489940|ref|XP_002267384.2| PREDICTED: probable pectate lyase 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357518457|ref|XP_003629517.1| Major pollen allergen-like protein [Medicago truncatula] gi|355523539|gb|AET03993.1| Major pollen allergen-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357518441|ref|XP_003629509.1| Major pollen allergen-like protein [Medicago truncatula] gi|355523531|gb|AET03985.1| Major pollen allergen-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
TAIR|locus:2184797297 AT5G09280 [Arabidopsis thalian 0.549 0.373 0.729 1.6e-63
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 0.524 0.259 0.537 7.5e-41
TAIR|locus:2204232368 AT1G30350 [Arabidopsis thalian 0.702 0.385 0.472 1.5e-39
TAIR|locus:2121914408 AT4G24780 [Arabidopsis thalian 0.539 0.267 0.518 1.7e-39
TAIR|locus:2093131440 AT3G24670 [Arabidopsis thalian 0.539 0.247 0.536 2.5e-39
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.539 0.252 0.527 2.5e-39
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 0.524 0.254 0.528 6.5e-39
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.524 0.254 0.537 1.1e-38
TAIR|locus:2008925384 AT1G11920 [Arabidopsis thalian 0.524 0.276 0.556 2.8e-38
TAIR|locus:2086656412 AT3G27400 [Arabidopsis thalian 0.524 0.257 0.547 2.8e-38
TAIR|locus:2184797 AT5G09280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 477 (173.0 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
 Identities = 81/111 (72%), Positives = 97/111 (87%)

Query:    54 KLRKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGH 113
             +L  +D DAIRLV A KVWIDHNTLY C++GL+DVT GSTDVT+SNNWFRNQDK+ LLGH
Sbjct:   114 QLGHMDGDAIRLVTAKKVWIDHNTLYDCEDGLLDVTLGSTDVTVSNNWFRNQDKVMLLGH 173

Query:   114 DDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIG 164
             DDGY++DK+M++T+ +NHFG NCNQRMPRVRHG+AHV NN Y+ WTQY IG
Sbjct:   174 DDGYVKDKDMRVTVVFNHFGPNCNQRMPRVRHGYAHVANNYYQGWTQYAIG 224
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016829 "lyase activity" evidence=ISS
GO:0030570 "pectate lyase activity" evidence=ISS
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204232 AT1G30350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008925 AT1G11920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_III001856
hypothetical protein (352 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
smart00656190 smart00656, Amb_all, Amb_all domain 2e-40
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 5e-36
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 3e-21
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  135 bits (343), Expect = 2e-40
 Identities = 61/128 (47%), Positives = 77/128 (60%), Gaps = 13/128 (10%)

Query: 49  NITLHKLRKI---DRDAIRLVIALKVWIDHNTLYKCQ---------NGLIDVTRGSTDVT 96
           N+T+H  + +   D DAI +  +  VWIDH +L  C          +GLID+  GST VT
Sbjct: 46  NLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVT 105

Query: 97  ISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYR 156
           ISNN+F N  K+ LLGH D    D  M++TIA+N+FG N  QR PRVR G+ HV NN Y 
Sbjct: 106 ISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVRFGYVHVYNNYYT 164

Query: 157 KWTQYTIG 164
            WT Y IG
Sbjct: 165 GWTSYAIG 172

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 202
smart00656190 Amb_all Amb_all domain. 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PLN03003 456 Probable polygalacturonase At3g15720 97.57
PLN02218431 polygalacturonase ADPG 97.46
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.46
PLN02793443 Probable polygalacturonase 97.34
PLN02155394 polygalacturonase 97.23
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.04
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 96.77
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.5
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.99
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 95.72
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 95.71
PLN03010409 polygalacturonase 95.27
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 95.08
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 92.38
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 90.27
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 88.26
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 87.02
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 85.76
PLN02793443 Probable polygalacturonase 85.58
smart00656190 Amb_all Amb_all domain. 83.83
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 82.79
PLN02155394 polygalacturonase 81.34
>smart00656 Amb_all Amb_all domain Back     alignment and domain information 
Probab=100.00  E-value=3e-40  Score=274.76  Aligned_cols=142  Identities=42%  Similarity=0.601  Sum_probs=126.6

Q ss_pred             CCceEEEEeeCeEEEeeec------CCCCCCeEEeecCCeEEEecceeccC---------CcceEEeeeCCccEEEecce
Q 041616           37 PQKVWTTYRKHMNITLHKL------RKIDRDAIRLVIALKVWIDHNTLYKC---------QNGLIDVTRGSTDVTISNNW  101 (202)
Q Consensus        37 ~~p~~IvF~~~g~I~l~~I------~~~~~Dai~i~~~~nVwIDHctfs~~---------~Dg~id~~~~s~~VTiS~n~  101 (202)
                      ++++.|.-..+.+||...|      ..+++|+|+++++++||||||+|+|+         .|+++|++.++++||||||+
T Consensus        31 g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~  110 (190)
T smart00656       31 GGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNY  110 (190)
T ss_pred             eeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECce
Confidence            6667766666777775555      23688999999999999999999998         89999999999999999999


Q ss_pred             eecCCeeeeeCCCCCccCCCceeEEEEceEecCCCCCCCCcccCCeEEEECceEECccceEEcccc--cccccCcceEec
Q 041616          102 FRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIGKAN--LKYTEEQKCQVA  179 (202)
Q Consensus       102 f~~h~k~~liG~~d~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r~G~~hv~NN~~~n~~~yaig~~~--~~y~~~~~f~~~  179 (202)
                      |.+|+|++|+|++|+...+..++|||||||| +++.+|+||+|+|++|+|||||++|..||++.+.  .+++|+|+|...
T Consensus       111 f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~-~~~~~R~P~~r~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~  189 (190)
T smart00656      111 FHNHWKVMLLGHSDSDTDDGKMRVTIAHNYF-GNLRQRAPRVRFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP  189 (190)
T ss_pred             EecCCEEEEEccCCCccccccceEEEECcEE-cCcccCCCcccCCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence            9999999999999887655688999999999 8999999999999999999999999999988655  779999999754

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 9e-32
3zsc_A340 Catalytic Function And Substrate Recognition Of The 5e-13
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 4e-12
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 4e-10
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 6e-10
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 8e-10
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 4e-09
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 4e-09
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 4e-09
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 5e-09
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 1e-08
3krg_A399 Structural Insights Into Substrate Specificity And 2e-08
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 2e-08
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 2e-08
1plu_A353 Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu 1e-06
2ewe_A353 Crystal Structure Of Pectate Lyase C R218k Mutant I 3e-06
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  132 bits (333), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 70/155 (45%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 49  NITLHKLRKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKI 108
           +I +  +   D DAI +      WIDHN+L  C +GLIDVT GST +TISNN F N  K+
Sbjct: 139 SIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKV 198
Query: 109 KLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTI-GKAN 167
            LLGHDD Y  DK+MK+T+A+N FG N  QRMPR R+G  HV NN Y  W  Y I G +N
Sbjct: 199 MLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSN 258
Query: 168 LKYTEEQKCQVANAKSMRSLTSELRVSKCSRRSRC 202
                E     A ++S +   ++ R+  C   S C
Sbjct: 259 PTILSEGNSFTAPSESYKKEVTK-RIG-CESPSAC 291
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353 Back     alignment and structure
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In Complex With Pentagalacturonic Acid Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-36
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 5e-33
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 9e-30
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 1e-29
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 6e-27
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 7e-26
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 2e-25
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 4e-24
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 4e-24
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 2e-23
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 2e-22
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  129 bits (325), Expect = 1e-36
 Identities = 62/120 (51%), Positives = 75/120 (62%)

Query: 45  RKHMNITLHKLRKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRN 104
               +I +  +   D DAI +      WIDHN+L  C +GLIDVT GST +TISNN F N
Sbjct: 135 LVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFN 194

Query: 105 QDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIG 164
             K+ LLGHDD Y  DK+MK+T+A+N FG N  QRMPR R+G  HV NN Y  W  Y IG
Sbjct: 195 HHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIG 254
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.02
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.93
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.68
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.54
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.51
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.44
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.4
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.23
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.8
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 96.79
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 96.77
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.66
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.47
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.37
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.3
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.03
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 95.6
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 95.33
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 93.49
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 93.12
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 92.65
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 92.53
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 92.41
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 91.33
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 91.31
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 91.17
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 90.76
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 89.69
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 89.66
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 89.13
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 89.13
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 88.31
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 88.15
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 86.83
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 85.57
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 85.1
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 84.52
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 84.36
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 83.33
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 82.75
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 82.44
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 81.5
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 80.66
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=1.3e-53  Score=382.09  Aligned_cols=180  Identities=46%  Similarity=0.781  Sum_probs=163.6

Q ss_pred             CCCCCCCcEEEEEEcCCCCCCCCCCCCchhhhhhhCCCceEEEEeeCeEEEeee--------------------------
Q 041616            1 MTNNVGKDVVRYKVTDPGDDTINPKPGTLRYEAILIPQKVWTTYRKHMNITLHK--------------------------   54 (202)
Q Consensus         1 ~tGGrgG~v~~y~VT~l~D~~~~p~~GsLR~av~~~~~p~~IvF~~~g~I~l~~--------------------------   54 (202)
                      .||||||+|  |+||+|+|++++|+|||||+|+++ ++||||+|+++|+|+|+.                          
T Consensus        32 ttGG~gG~v--~~VT~~~d~~~~~~~GsLr~av~~-~~P~~Ivf~~~g~I~l~~~l~V~sn~TI~G~ga~~~i~G~G~gi  108 (346)
T 1pxz_A           32 TMGGKGGDF--YTVTSTDDNPVNPTPGTLRYGATR-EKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCL  108 (346)
T ss_dssp             CCTTTTSEE--EEECCCCCCTTSCCTTSHHHHHHC-SSCEEEEESSCEEECCSSCEECCSSEEEECTTSCEEEETTSCCE
T ss_pred             CcCCCCccE--EEECChHHcccccCcchhHHHhcc-CCCeEEEEcCCcEEecCccEEecCCeEEEccCCceEEeCCcceE
Confidence            489999999  999999999999999999999999 999999999999998651                          


Q ss_pred             ------------c--C----------------------CCCCCeEEeecCCeEEEecceeccCCcceEEeeeCCccEEEe
Q 041616           55 ------------L--R----------------------KIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTIS   98 (202)
Q Consensus        55 ------------I--~----------------------~~~~Dai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS   98 (202)
                                  |  .                      .+++|+|+|++++|||||||+|+|+.||++|++.++++||||
T Consensus       109 ~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~id~~~~s~~vTIS  188 (346)
T 1pxz_A          109 FMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITIS  188 (346)
T ss_dssp             EEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCEEEEEESCEEECCSSEEEEEESSCEEEEEE
T ss_pred             EEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCceEEEEeeEEecCCCCcEeeccCcceEEEE
Confidence                        0  1                      167899999999999999999999999999999999999999


Q ss_pred             cceeecCCeeeeeCCCCCccCCCceeEEEEceEecCCCCCCCCcccCCeEEEECceEECccceEEcccc--cccccCcce
Q 041616           99 NNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIGKAN--LKYTEEQKC  176 (202)
Q Consensus        99 ~n~f~~h~k~~liG~~d~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r~G~~hv~NN~~~n~~~yaig~~~--~~y~~~~~f  176 (202)
                      ||+|++|+|++|+|++|+...|..+++|||||+|++++.+|+||+|+|.+|++||||++|+.|++++++  .+++|+|+|
T Consensus       189 nn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~hv~NN~~~~~~~~~i~~~~~~~i~~egN~F  268 (346)
T 1pxz_A          189 NNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSF  268 (346)
T ss_dssp             SCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEESCEECCCSSCSEEEESCCEEEEESCEE
T ss_pred             eeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEEEEeeEEEcccceEEeccCCceEEEECCEE
Confidence            999999999999999998777778999999999977999999999999999999999999999988654  667788888


Q ss_pred             EecCCcc
Q 041616          177 QVANAKS  183 (202)
Q Consensus       177 ~~~~~s~  183 (202)
                      ...|.++
T Consensus       269 ~~~~~~~  275 (346)
T 1pxz_A          269 TAPSESY  275 (346)
T ss_dssp             ECCSCGG
T ss_pred             ECCCCCc
Confidence            7776543
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 202
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 2e-32
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 8e-26
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 1e-25
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 3e-25
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 2e-22
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 7e-21
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  117 bits (294), Expect = 2e-32
 Identities = 78/215 (36%), Positives = 94/215 (43%), Gaps = 63/215 (29%)

Query: 12  YKVTDPGDDTINPKPGTLRYEAILIPQKVW------------------------------ 41
           Y VT   D+ +NP PGTLR       + +W                              
Sbjct: 41  YTVTSTDDNPVNPTPGTLR-YGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADV 99

Query: 42  --------TTYRKHMNITLHKLR------------------------KIDRDAIRLVIAL 69
                      RK  ++ LH L                           D DAI +    
Sbjct: 100 HLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT 159

Query: 70  KVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAY 129
             WIDHN+L  C +GLIDVT GST +TISNN F N  K+ LLGHDD Y  DK+MK+T+A+
Sbjct: 160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAF 219

Query: 130 NHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIG 164
           N FG N  QRMPR R+G  HV NN Y  W  Y IG
Sbjct: 220 NQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIG 254
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.76
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.73
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.04
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.02
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.74
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.54
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 96.49
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.8
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 93.44
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 92.96
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 91.37
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 89.27
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 87.99
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 87.01
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 85.81
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 85.58
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 84.84
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 84.39
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 81.76
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 80.8
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=1.1e-54  Score=386.54  Aligned_cols=185  Identities=45%  Similarity=0.770  Sum_probs=166.3

Q ss_pred             CCCCCCCcEEEEEEcCCCCCCCCCCCCchhhhhhhCCCceEEEEeeCeEEEeee--------------------------
Q 041616            1 MTNNVGKDVVRYKVTDPGDDTINPKPGTLRYEAILIPQKVWTTYRKHMNITLHK--------------------------   54 (202)
Q Consensus         1 ~tGGrgG~v~~y~VT~l~D~~~~p~~GsLR~av~~~~~p~~IvF~~~g~I~l~~--------------------------   54 (202)
                      .||||||+|  |+||+|+|++++|+|||||+|++| ++||||||+++|+|+|+.                          
T Consensus        32 ttGG~gG~v--~~Vt~l~D~~~~~g~GsLr~a~~~-~~pr~IvF~vsg~I~l~~~L~v~sn~TI~G~ga~~~i~~~G~~i  108 (346)
T d1pxza_          32 TMGGKGGDF--YTVTSTDDNPVNPTPGTLRYGATR-EKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCL  108 (346)
T ss_dssp             CCTTTTSEE--EEECCCCCCTTSCCTTSHHHHHHC-SSCEEEEESSCEEECCSSCEECCSSEEEECTTSCEEEETTSCCE
T ss_pred             CcCCCCceE--EEecChhhccccCCCccHHHHhhC-CCCeEEEEeccEEEeccceEEeCCCceEEccCCCceEeeecceE
Confidence            489999999  999999999999999999999999 999999999999999771                          


Q ss_pred             ------------c------------------------CCCCCCeEEeecCCeEEEecceeccCCcceEEeeeCCccEEEe
Q 041616           55 ------------L------------------------RKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTIS   98 (202)
Q Consensus        55 ------------I------------------------~~~~~Dai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS   98 (202)
                                  |                        ...++|+|+|++++|||||||+|+|+.||++|+++++++||||
T Consensus       109 ~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~nvwIDH~s~s~~~D~~idi~~~s~~vTis  188 (346)
T d1pxza_         109 FMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITIS  188 (346)
T ss_dssp             EEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCEEEEEESCEEECCSSEEEEEESSCEEEEEE
T ss_pred             EEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCceEEEECcEeeccccCceeEecCCEEEEEE
Confidence                        0                        1356799999999999999999999999999999999999999


Q ss_pred             cceeecCCeeeeeCCCCCccCCCceeEEEEceEecCCCCCCCCcccCCeEEEECceEECccceEEcccc--cccccCcce
Q 041616           99 NNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIGKAN--LKYTEEQKC  176 (202)
Q Consensus        99 ~n~f~~h~k~~liG~~d~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r~G~~hv~NN~~~n~~~yaig~~~--~~y~~~~~f  176 (202)
                      ||+|++|+|++|+|+++....+++++||||||+|..+..+|.|+.|+|.+|++||||++|..||+++++  .+++|+|+|
T Consensus       189 ~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F  268 (346)
T d1pxza_         189 NNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSF  268 (346)
T ss_dssp             SCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEESCEECCCSSCSEEEESCCEEEEESCEE
T ss_pred             eeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEEEECcEeecCccEEEeccCceEEEEEeeEE
Confidence            999999999999999988776778999999999943456677788999999999999999999998665  779999999


Q ss_pred             EecCCcchhhhc
Q 041616          177 QVANAKSMRSLT  188 (202)
Q Consensus       177 ~~~~~s~v~~lt  188 (202)
                      ...+.+.....+
T Consensus       269 ~~~~~~~~~~~~  280 (346)
T d1pxza_         269 TAPSESYKKEVT  280 (346)
T ss_dssp             ECCSCGGGCBSE
T ss_pred             ECCCCccceeee
Confidence            988777655444
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure