Citrus Sinensis ID: 041622

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MSKMRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRAEYRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVEPAKRRDSKKLESLRKSVIAAYSVERNEPRYMLRSMSKENKKPPLPLNSSAMATTEKKTVSRRAGKI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHcHHccccccccccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEccccccEEccccEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHccccHHHHHHHHHHHHHHHccccEEccccccccccEEEcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccEEEEEccEEEEEEcccc
Coil and Loop (DISEMBL)
mskmrtdrkpplakspirtrprrvlrsnsttlqtppgsltksqkpirswdmeetDFRAEYRSISCELRALARMVQdefgtndtnkggigkslcanssplfergrFYEEYAARRNERLKrkkseacsgektpynlgvtvepakrrdskKLESLRKSVIAAYSverneprymlrsmskenkkpplplnssamattekKTVSRRAGKI
Flexible Loop (DISEMBL)
mskmrtdrkpplakspirtrprrvlrsnsttlqtppgsltksqkpirswDMEETDFRAEYRSISCELRALARMVQDEfgtndtnkggigkslcanssplferGRFYEEYAARRNerlkrkkseacsgektpynlgvtvepakrrdskkleslrksviaaysverneprymlrsmskenkkpplplnssamattekktvsrragki
Low Complexity Region (SEG)
MSKMRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRAEYRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVEPAKRRDSKKLESLRKSVIAAYSVERNEPRYMLRSMSKENKKPPLPLNSSAMATTEKKTVSRRAGKI
Disordered region (IsUnstruct)
*******************************************************FRAEYRSISCELRALARMVQDEFGTN****GGIGKSLCANSSPLFERGRFYEEY************************************************************************************************
Disordered Region (DISOPRED)
*********************************************************AEYRSISCELRALARMVQDEF**************CANSSPLFERGRFYEEYAA********************YNLGV**************************************************************SR*****
Disordered Region (DISEMBL)
*************KSPIRTRPRRVLRS*****************PIRSWDMEETDFRAEYRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARR*************GEKTPYNLGVTVEPAKRRDSKKLESLRKSVIAAYSVERNEPRYMLRSMSKENKKPPLPLNSSAMA**************
Disordered Region (DISPRO)
***********L*KSPIRTRPRRVLRSNSTTL***PGSLT*************TDFRAEYRSISCELRALARMVQDEFGT*****************PLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVEP*************************EPRYMLRSM*KENKKPPLPLNSSAMATTEKKTVSRR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKMRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRAEYRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKSEACSGEKTPYNLGVTVEPAKRRDSKKLESLRKSVIAAYSVERNEPRYMLRSMSKENKKPPLPLNSSAMATTEKKTVSRRAGKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
224083266	208	predicted protein [Populus trichocarpa]	1.0	0.985	0.706	2e-74
224065691	208	predicted protein [Populus trichocarpa]	1.0	0.985	0.677	6e-71
255539210	206	conserved hypothetical protein [Ricinus	0.985	0.980	0.674	7e-65
307136147	212	hypothetical protein [Cucumis melo subsp	1.0	0.966	0.655	2e-60
225459872	205	PREDICTED: uncharacterized protein LOC10	0.990	0.990	0.603	6e-60
449519444	212	PREDICTED: uncharacterized LOC101215930	1.0	0.966	0.646	2e-58
449452981	212	PREDICTED: uncharacterized protein LOC10	1.0	0.966	0.641	2e-58
255637797	204	unknown [Glycine max]	0.946	0.950	0.538	4e-45
356517354	204	PREDICTED: uncharacterized protein LOC10	0.839	0.843	0.574	3e-44
351726746	202	uncharacterized protein LOC100306057 [Gl	0.941	0.955	0.507	3e-41

>gi|224083266|ref|XP_002306974.1| predicted protein [Populus trichocarpa] gi|222856423|gb|EEE93970.1| predicted protein [Populus trichocarpa]

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/208 (70%), Positives = 169/208 (81%), Gaps = 3/208 (1%)

Query: 1   MSKMRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRAEY 60
           MS+MRTDRKPPLAKSPIR RPRRVLRS STTLQTPPGSLTKSQKP R  D E++D R EY
Sbjct: 1   MSRMRTDRKPPLAKSPIRIRPRRVLRSESTTLQTPPGSLTKSQKPNRKLDTEDSDLRPEY 60

Query: 61  RSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRK 120
            SISCELRALA+MV+DEFG  ++  GG+GKSL ANSSPLFERGRFYEEY+ARRN+RLKRK
Sbjct: 61  HSISCELRALAKMVRDEFGNGESTNGGVGKSLSANSSPLFERGRFYEEYSARRNDRLKRK 120

Query: 121 KSEACSGEKTPYNLGVTVEPAKRRDSKKLESLRKSVIAAYSVERNE-PRYMLRSMSKENK 179
           K +     KTPYNLGVTVE +KRR ++KLES RKSV  A  VERNE PRY+LRSM+KENK
Sbjct: 121 KGDTGDDMKTPYNLGVTVESSKRRYTRKLESARKSVSDACLVERNETPRYLLRSMNKENK 180

Query: 180 KPPLPLNS--SAMATTEKKTVSRRAGKI 205
           KPPLP+ S   ++   E+K  +R+  KI
Sbjct: 181 KPPLPVYSFEKSVLAGERKVAARKVRKI 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065691|ref|XP_002301923.1| predicted protein [Populus trichocarpa] gi|222843649|gb|EEE81196.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 141/208 (67%), Positives = 168/208 (80%), Gaps = 3/208 (1%)

Query: 1   MSKMRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRAEY 60
           MS+M+T  KPPLAKSP R RPRR +RS STT QTPPGSL KSQ+P R WDMEE+D R EY
Sbjct: 1   MSRMKTVGKPPLAKSPTRLRPRRSIRSESTTSQTPPGSLAKSQRPNRKWDMEESDLRPEY 60

Query: 61  RSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRK 120
           +SIS ELRALA+M + EFG  +++ GG+G+SL ANSSPLFERGRFYEEY+ RRNERLKRK
Sbjct: 61  QSISWELRALAKMARGEFGNGESSNGGVGRSLSANSSPLFERGRFYEEYSVRRNERLKRK 120

Query: 121 KSEACSGEKTPYNLGVTVEPAKRRDSKKLESLRKSVIAAYSVERNE-PRYMLRSMSKENK 179
           K +  +  KTP NLGVT+E +KRRDSKKLESLRKSV AAY VERNE  RYMLRSM+KENK
Sbjct: 121 KGDTGNEVKTPCNLGVTIESSKRRDSKKLESLRKSVSAAYCVERNENSRYMLRSMNKENK 180

Query: 180 KPPLPLNS--SAMATTEKKTVSRRAGKI 205
           KPPLP+ +   ++  +E+K  +R+A KI
Sbjct: 181 KPPLPVYNYEKSVLASERKVTARKARKI 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539210|ref|XP_002510670.1| conserved hypothetical protein [Ricinus communis] gi|223551371|gb|EEF52857.1| conserved hypothetical protein [Ricinus communis]

 Score =  252 bits (643), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 158/206 (76%), Gaps = 4/206 (1%)

Query: 4   MRTDRKPPLAKSPIRTRPRRVLRSNSTT-LQTPPGSLTKSQKPIRSWDMEETDFRAEYRS 62
           M+ DRKPPLAKSPIR RP RVLRS +TT LQ+PPGSL KSQK     DMEE D R EYRS
Sbjct: 1   MKYDRKPPLAKSPIRVRPGRVLRSTTTTSLQSPPGSLIKSQKLNPGPDMEELDLRPEYRS 60

Query: 63  ISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRKKS 122
           IS ELRALARMVQDEFG  +    G  KSL ANSSPLFERGRFY+ Y+ARRNERLKRK  
Sbjct: 61  ISWELRALARMVQDEFGKENATNAGERKSLSANSSPLFERGRFYDVYSARRNERLKRKTG 120

Query: 123 EAC-SGEKTPYNLGVTVEPAKRRDSKKLESLRKSVIAAYSVERNE-PRYMLRSMSKENKK 180
           E    G KTP+NLGV +E +K+RD+KKL+SLRKSV AAYSVE +E PRY LRS+SKENKK
Sbjct: 121 ETGEEGVKTPHNLGVNIESSKKRDTKKLQSLRKSVSAAYSVESSEIPRYSLRSLSKENKK 180

Query: 181 PPLPLN-SSAMATTEKKTVSRRAGKI 205
           PPLP+N   ++   EKK  +RR  K+
Sbjct: 181 PPLPVNYEKSVLANEKKVGARRVRKV 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136147|gb|ADN33991.1| hypothetical protein [Cucumis melo subsp. melo]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 139/212 (65%), Positives = 167/212 (78%), Gaps = 7/212 (3%)

Query: 1   MSKMRTDRKPPLAKSPIRTRPRRVLRSNSTT-LQTPPGSLTKSQKPIRSWDMEETDFRAE 59
           MSKMR+DR+PPLA+SP+R R RRV +SNSTT +QTPPGSLTKSQK IR  D++E++ R E
Sbjct: 1   MSKMRSDRRPPLARSPLRLRSRRVPQSNSTTSIQTPPGSLTKSQKMIRPSDLQESELRPE 60

Query: 60  YRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERL-K 118
           YR+ISCELRALA MV+ E G  ++   G+G  L  NSS LFERGRFY+EY+ARRNERL K
Sbjct: 61  YRTISCELRALASMVRMELGCIESEGNGVGDKLSVNSSSLFERGRFYDEYSARRNERLKK 120

Query: 119 RKKSEACSGEKTPYNLGVTVEPAKRRDSKKL-ESLRKSVIAAYSVERNE--PRYMLRSMS 175
           RKK+E  +  KTPYNLGVTVE +KR+ SKKL  SLRKSV AAYS ER+E  PRY+LRSM 
Sbjct: 121 RKKAETVAEVKTPYNLGVTVESSKRQSSKKLVNSLRKSVSAAYSAERSETAPRYLLRSMM 180

Query: 176 KENKKPPLPLN--SSAMATTEKKTVSRRAGKI 205
           KENKKPPLP+N   S +   E+K V+RRA +I
Sbjct: 181 KENKKPPLPVNLEKSMIGGGERKMVTRRARRI 212

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459872|ref|XP_002285934.1| PREDICTED: uncharacterized protein LOC100264304 [Vitis vinifera] gi|302141661|emb|CBI18864.3| unnamed protein product [Vitis vinifera]

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 125/207 (60%), Positives = 156/207 (75%), Gaps = 4/207 (1%)

Query: 1   MSKMRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRAEY 60
           MSKMR++ KPPL  SPI+ R RRVLRS++TT+QTPPGSLTK+    R+  +EE+  R EY
Sbjct: 1   MSKMRSNGKPPLGNSPIQLRSRRVLRSSATTIQTPPGSLTKTLN--RTQVIEESGLRPEY 58

Query: 61  RSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRK 120
            +ISCEL+ALA++V++E G   +   G   +  ANSSPLFERGRFY+EY+ARRNERLKRK
Sbjct: 59  LTISCELQALAKIVRNELGNGSSENVGFPNTFGANSSPLFERGRFYDEYSARRNERLKRK 118

Query: 121 KSEACSGEKTPYNLGVTVEPAKRRDSKKLESLRKSVIAAYSVERNE-PRYMLRSMSKENK 179
           K E     KTPY LGVTVEP+KRRD+KK ESLRKSV AA SV+R+E PRY+LRS +KENK
Sbjct: 119 KGETGDVGKTPYKLGVTVEPSKRRDTKKFESLRKSVPAALSVDRSENPRYLLRSSTKENK 178

Query: 180 KPPLPLNSSAMATT-EKKTVSRRAGKI 205
           KPP+P N    A   ++K  +RR  K+
Sbjct: 179 KPPMPFNVEKSAVAGDRKIGARRVRKV 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519444|ref|XP_004166745.1| PREDICTED: uncharacterized LOC101215930 [Cucumis sativus]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 137/212 (64%), Positives = 164/212 (77%), Gaps = 7/212 (3%)

Query: 1   MSKMRTDRKPPLAKSPIRTRPRRVLRSNSTT-LQTPPGSLTKSQKPIRSWDMEETDFRAE 59
           MSKMR+DR+PPLA+SP+R R RRV +SNSTT +QTPPGSLTKSQK IR  D++E + R E
Sbjct: 1   MSKMRSDRRPPLARSPLRLRSRRVPQSNSTTSMQTPPGSLTKSQKTIRPSDLQEMELRPE 60

Query: 60  YRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERL-K 118
           YR+ISCELRALA MV+ E G  +    G+G     NSS LFERGR Y+EY+ARRNERL K
Sbjct: 61  YRTISCELRALASMVRMELGCEEYESNGVGDKSSVNSSSLFERGRLYDEYSARRNERLKK 120

Query: 119 RKKSEACSGEKTPYNLGVTVEPAKRRDSKKL-ESLRKSVIAAYSVERNE--PRYMLRSMS 175
           RKK+E+ +  KTPYNLGVTVE +KR+ SKKL  SLRKSV AAYS ER+E  PRY+LRSM 
Sbjct: 121 RKKAESVAEVKTPYNLGVTVESSKRQSSKKLVNSLRKSVSAAYSEERSETGPRYLLRSMM 180

Query: 176 KENKKPPLPLN--SSAMATTEKKTVSRRAGKI 205
           KENKKPPLP+N   S +   E+K V+RRA +I
Sbjct: 181 KENKKPPLPVNLEKSTIGGGERKMVTRRARRI 212

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452981|ref|XP_004144237.1| PREDICTED: uncharacterized protein LOC101215930 [Cucumis sativus]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 136/212 (64%), Positives = 165/212 (77%), Gaps = 7/212 (3%)

Query: 1   MSKMRTDRKPPLAKSPIRTRPRRVLRSNSTT-LQTPPGSLTKSQKPIRSWDMEETDFRAE 59
           MSKMR+DR+PP+A+SP+R R RRV +SNSTT +QTPPGSLTKSQK IR  D++E++ R E
Sbjct: 1   MSKMRSDRRPPIARSPLRLRSRRVPQSNSTTSMQTPPGSLTKSQKTIRPSDLQESELRPE 60

Query: 60  YRSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERL-K 118
           YR+ISCELRALA MV+ E G  +    G+G     NSS LFERGR Y+EY+ARRNERL K
Sbjct: 61  YRTISCELRALASMVRMELGCEEYESNGVGDKSSVNSSSLFERGRLYDEYSARRNERLKK 120

Query: 119 RKKSEACSGEKTPYNLGVTVEPAKRRDSKKL-ESLRKSVIAAYSVERNE--PRYMLRSMS 175
           RKK+E+ +  KTPYNLGVTVE +KR+ SKKL  SLRKSV AAYS ER+E  PRY+LRSM 
Sbjct: 121 RKKAESVAEVKTPYNLGVTVESSKRQSSKKLVNSLRKSVSAAYSEERSETGPRYLLRSMM 180

Query: 176 KENKKPPLPLN--SSAMATTEKKTVSRRAGKI 205
           KENKKPPLP+N   S +   E+K V+RRA +I
Sbjct: 181 KENKKPPLPVNLEKSTIGGGERKMVTRRARRI 212

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637797|gb|ACU19220.1| unknown [Glycine max]

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 113/210 (53%), Positives = 137/210 (65%), Gaps = 16/210 (7%)

Query: 2   SKMRTDRKPPLAKSPIRTRPRRVLRS-NSTTLQTPPGSLTKSQKPIRSWDMEETDFRAEY 60
           S M++  KPPL +SPIR RP   + S NS  LQTPPGSLTKSQKP+ S +M     R EY
Sbjct: 5   STMKSMYKPPLPRSPIRLRPSHAVHSSNSIALQTPPGSLTKSQKPVISPNM-----RPEY 59

Query: 61  RSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRK 120
           R+ISCELRAL +MV+DEF   ++ K        ANSS LFERGRFY+EY+ARRNERL RK
Sbjct: 60  RTISCELRALTKMVRDEFSKANSEKAA-----SANSSVLFERGRFYDEYSARRNERLMRK 114

Query: 121 KSEACSGE---KTPYNLGVTVEPAKRRDS-KKLESLRKSVIAAYSVERNE-PRYMLRSMS 175
           K      E   K  ++LGVT+E  K+  S +K+ +LRKS+ AAYS   +E PRYMLRSM+
Sbjct: 115 KGVTAVDEGKAKPVHSLGVTMESGKKSSSVRKMGTLRKSIFAAYSSGVSETPRYMLRSMT 174

Query: 176 KENKKPPLPLNSSAMATTEKKTVSRRAGKI 205
           KENKKPPL            K +  RA KI
Sbjct: 175 KENKKPPLAAKFDKSVVAGDKKMGTRARKI 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517354|ref|XP_003527352.1| PREDICTED: uncharacterized protein LOC100810616 [Glycine max]

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/188 (57%), Positives = 131/188 (69%), Gaps = 16/188 (8%)

Query: 2   SKMRTDRKPPLAKSPIRTRPRRVLRS-NSTTLQTPPGSLTKSQKPIRSWDMEETDFRAEY 60
           S M++  KPPL +SPIR RP   + S NS  LQTPPGSLTKSQKP+ S +M     R EY
Sbjct: 5   STMKSMYKPPLPRSPIRLRPSHAVHSSNSIALQTPPGSLTKSQKPVISPNM-----RPEY 59

Query: 61  RSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRK 120
           R+ISCELRAL +MV+DEF   ++ K        ANSS LFERGRFY+EY+ARRNERL RK
Sbjct: 60  RTISCELRALTKMVRDEFSKANSEKAA-----SANSSVLFERGRFYDEYSARRNERLMRK 114

Query: 121 KSEACSGE---KTPYNLGVTVEPAKRRDS-KKLESLRKSVIAAYSVERNE-PRYMLRSMS 175
           K      E   K  ++LGVT+E  K+  S +K+ +LRKS+ AAYS   +E PRYMLRSM+
Sbjct: 115 KGVTAVDEGKAKPVHSLGVTMESGKKSSSVRKMGTLRKSISAAYSSGVSETPRYMLRSMT 174

Query: 176 KENKKPPL 183
           KENKKPPL
Sbjct: 175 KENKKPPL 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726746|ref|NP_001236881.1| uncharacterized protein LOC100306057 [Glycine max] gi|255627407|gb|ACU14048.1| unknown [Glycine max]

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/209 (50%), Positives = 130/209 (62%), Gaps = 16/209 (7%)

Query: 2   SKMRTDRKPPLAKSPIRTRPRRV-LRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRAEY 60
           S +++  KPPL +SPIR RP      SNS  LQTPPGSLTKSQKP+ S ++     R EY
Sbjct: 5   STIKSVYKPPLPRSPIRLRPSHAAYSSNSIALQTPPGSLTKSQKPVLSLNI-----RPEY 59

Query: 61  RSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRK 120
           R+ISCEL AL +MV+DEF   ++ K         NSS LFERGRFY+EY+ARRNERL RK
Sbjct: 60  RTISCELWALTKMVRDEFSKVNSEKA------ATNSSVLFERGRFYDEYSARRNERLMRK 113

Query: 121 KSEACSGE---KTPYNLGVTVEPAKRRDSKKLESLRKSVIAAYSVE-RNEPRYMLRSMSK 176
           K      E   K   +LGVT+E  K+   +K+ +LRKS+ AAYS      PRYMLRSM+K
Sbjct: 114 KGVTAVDEGKAKPVRSLGVTMESGKKTSVRKMGTLRKSISAAYSSGVSGTPRYMLRSMTK 173

Query: 177 ENKKPPLPLNSSAMATTEKKTVSRRAGKI 205
           ENKKPPL           +K +  R  KI
Sbjct: 174 ENKKPPLAAKFDKSVVAGEKKMGTRGRKI 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2162266	205	AT5G42330 "AT5G42330" [Arabido	0.946	0.946	0.525	1.9e-42

TAIR|locus:2162266 AT5G42330 "AT5G42330" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 112/213 (52%), Positives = 142/213 (66%)

Query:     1 MSKMRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTP-PGSLTKSQKPIRSWDMEETDFRAE 59
             MSKMR+  KPPL KSPIR R R+VL S+   LQTP PG L K  + +   D+     + +
Sbjct:     1 MSKMRSYLKPPLPKSPIRLRSRQVLHSS---LQTPSPGFL-KPGRRLSDVDLNPKP-QIK 55

Query:    60 YRSISCELRALARMVQDEFGTN-DTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLK 118
             Y SIS E+ ALA+MV+DEF    D  K    +SL  NS PLFERGRFYEEY+A+RNERL+
Sbjct:    56 YSSISSEIHALAKMVKDEFAEEEDRKKSSNLESLAKNSVPLFERGRFYEEYSAKRNERLR 115

Query:   119 RKKSE-ACSG---EKTPYNLGVTVEPA--KRRDSKKLESLRKSVIAAYSVERNE-PRYML 171
             RKK E A  G   + TPYNLGV  EP   KRR + K ES++K+V++   VE +  PRY L
Sbjct:   116 RKKGEEAVEGGVVKGTPYNLGVNHEPMTNKRRGTAKKESIKKTVVSM--VESSSIPRYSL 173

Query:   172 RSMSKENKKPPLPLNSSAMATTEKKTVSRRAGK 204
             RSM+KEN+KPPLPLN   +A +  K+V+ R G+
Sbjct:   174 RSMAKENRKPPLPLN---VAVSAMKSVTTRKGR 203


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.126   0.352    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      205       205   0.00096  111 3  11 23  0.41    33
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  151 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.50u 0.10s 21.60t   Elapsed:  00:00:01
  Total cpu time:  21.50u 0.10s 21.60t   Elapsed:  00:00:01
  Start:  Fri May 10 22:21:26 2013   End:  Fri May 10 22:21:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0002078301 hypothetical protein (208 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00