Citrus Sinensis ID: 041629

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
MRGKSSGTEIPPLNTTEPIRRTALNPDPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTFFAFMEAAKFAAHWLPFCRKFNLMERNPRAYFSSSSSTSTHACCSEIKRWAIGLLEVAFSRYCPITFGIRTMGLMGLAYAHYSFWPIWSIPIMVYAFLPQLALASGISIFPKISEPGFLLYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKSLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTIIAAFLAWTLYAAAFHISFSK
cccccccccccccccccccccEEccccccccccHHHHHHHHHHHHHccccccEEEEEccccccEEHHHHHHHHHHHHHHHHHHHcccEEEEcccHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccccHHHccEEcccccHHHHHHHHHHHHHHHHHHHHHHHcEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccc
cccccccccccccccccccEEEEEccccccccccEEHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHcHHHccccEEccccHHHHcccccccccHHHHHHHHHHHccEEEEEccccccHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccc
mrgkssgteipplnttepirrtalnpdpykepplsvVNTALSVmaydypteklsvyvsddggsaLTFFAFMEAAKFAAhwlpfcrkfnlmernprayfssssststhaCCSEIKRWAIGLLEVAFsrycpitfgiRTMGLMGLAYAhysfwpiwsipimVYAFLPQLALAsgisifpkisepgFLLYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKSLGisafgfnvtskvvddeqsKIYSqemldfgvpspMFVTLAVAAIVNFFSFSFGFLQMIcgsddneglpLQMLLAGFIMLNCWPVYEAMVLrtdkgkmptKVTIIAAFLAWTLYAAAFHISFSK
mrgkssgteipplnttepirrtalnpdpykeppLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTFFAFMEAAKFAAHWLPFCRKFNLMERNPRAYfssssststHACCSEIKRWAIGLLEVAFSRYCPITFGIRTMGLMGLAYAHYSFWPIWSIPIMVYAFLPQLALASGISIFPKISEPGFLLYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKSLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTIIAAFLAWTLYAAAFHISFSK
MRGKSSGTEIPPLNTTEPIRRTALNPDPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTffafmeaakfaaHWLPFCRKFNLMERNPRAYFssssststHACCSEIKRWAIGLLEVAFSRYCPITFGIRTMGLMGLAYAHYSFWPIWSIPIMVYAFLPQLALASGISIFPKISEPgfllylflflgaygQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKSLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTIIaaflawtlyaaafHISFSK
*********************************LSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTFFAFMEAAKFAAHWLPFCRKFNLMERNPRAYF******STHACCSEIKRWAIGLLEVAFSRYCPITFGIRTMGLMGLAYAHYSFWPIWSIPIMVYAFLPQLALASGISIFPKISEPGFLLYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKSLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTIIAAFLAWTLYAAAFHIS***
******************IRRTALNPDPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTFFAFMEAAKFAAHWLPFCRKFNLMERNPRAYFSSSSSTSTHACCSEIKRWAIGLLEVAFSRYCPITFGIRTMGLMGLAYAHYSFWPIWSIPIMVYAFLPQLALASGISIFPKISEPGFLLYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKSLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTIIAAFLAWTLYAAAFHISFSK
*********IPPLNTTEPIRRTALNPDPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTFFAFMEAAKFAAHWLPFCRKFNLMERNPRA************CCSEIKRWAIGLLEVAFSRYCPITFGIRTMGLMGLAYAHYSFWPIWSIPIMVYAFLPQLALASGISIFPKISEPGFLLYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKSLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTIIAAFLAWTLYAAAFHISFSK
*****SGTEIPPLNTTEPIRRTALNPDPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTFFAFMEAAKFAAHWLPFCRKFNLMERNPRAYFSSSSSTSTHACCSEIKRWAIGLLEVAFSRYCPITFGIRTMGLMGLAYAHYSFWPIWSIPIMVYAFLPQLALASGISIFPKISEPGFLLYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKSLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTIIAAFLAWTLYAAAFHISFS*
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SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiii
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MRGKSSGTEIPPLNTTEPIRRTALNPDPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTFFAFMEAAKFAAHWLPFCRKFNLMERNPRAYFSSSSSTSTHACCSEIKRWAIGLLEVAFSRYCPITFGIRTMGLMGLAYAHYSFWPIWSIPIMVYAFLPQLALASGISIFPKISEPGFLLYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKSLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTIIAAFLAWTLYAAAFHISFSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query362 2.2.26 [Sep-21-2011]
Q0WVN5751 Cellulose synthase-like p yes no 0.723 0.348 0.531 2e-75
Q8VYR4722 Cellulose synthase-like p no no 0.709 0.355 0.501 2e-71
Q570S7760 Cellulose synthase-like p no no 0.715 0.340 0.483 4e-66
Q8VZK9729 Cellulose synthase-like p no no 0.732 0.363 0.350 3e-40
Q651X7737 Cellulose synthase-like p yes no 0.812 0.398 0.320 6e-38
Q651X6728 Cellulose synthase-like p no no 0.709 0.353 0.329 2e-37
Q0DXZ1745 Cellulose synthase-like p no no 0.720 0.350 0.343 4e-36
Q84M431073 Probable cellulose syntha no no 0.676 0.228 0.280 3e-23
A2XN661073 Probable cellulose syntha N/A no 0.676 0.228 0.280 3e-23
Q84ZN61081 Probable cellulose syntha no no 0.676 0.226 0.273 7e-23
>sp|Q0WVN5|CSLG3_ARATH Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2 Back     alignment and function desciption
 Score =  283 bits (723), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 142/267 (53%), Positives = 182/267 (68%), Gaps = 5/267 (1%)

Query: 92  RNPRAYFSSSSSTSTHACCSEIKRWAIGLLEVAFSRYCPITFGIRTMGLM-GLAYAHYSF 150
           R  RA F   S  S     S+ KRWAIGLLEVA SRY PIT+G+++MGL+ G+ Y  Y+ 
Sbjct: 484 RPKRAAFCGDSPKSLIDVVSQQKRWAIGLLEVAISRYSPITYGVKSMGLVTGVGYCQYAC 543

Query: 151 WPIWSIPIMVYAFLPQLALASGISIFPKISEPGFLLYLFLFLGAYGQDCLDFLLEGGTFR 210
           W  WS+P++VY FLPQLAL    S+FPK S+P F LY+ LFLGAYGQD LDF+LEGGT+ 
Sbjct: 544 WAFWSLPLIVYGFLPQLALLYQSSVFPKSSDPWFWLYIVLFLGAYGQDLLDFVLEGGTYG 603

Query: 211 KWWNDQRIWLIRGLSCHLFGTLEYLLKSLGISAFGFNVTSKVVDD-EQSKIYSQEMLDFG 269
            WWNDQR+W IRG S HLFG +E+ LK+L +S  GFNVTSK  DD EQSK Y +E+ +FG
Sbjct: 604 GWWNDQRMWSIRGFSSHLFGFIEFTLKTLNLSTHGFNVTSKANDDEEQSKRYEKEIFEFG 663

Query: 270 VPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVL 329
             S MF+ L   AIVN  +F +G   +       EGL L+++LA F ++NC P+YEAMVL
Sbjct: 664 PSSSMFLPLTTVAIVNLLAFVWGLYGLFAW---GEGLVLELMLASFAVVNCLPIYEAMVL 720

Query: 330 RTDKGKMPTKVTIIAAFLAWTLYAAAF 356
           R D GK+P +V  +A  L + L  + +
Sbjct: 721 RIDDGKLPKRVCFVAGILTFVLIVSGY 747
Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q8VYR4|CSLG2_ARATH Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1 Back     alignment and function description
>sp|Q570S7|CSLG1_ARATH Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1 Back     alignment and function description
>sp|Q8VZK9|CSLE1_ARATH Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1 Back     alignment and function description
>sp|Q651X7|CSLE1_ORYSJ Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2 Back     alignment and function description
>sp|Q651X6|CSLE6_ORYSJ Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1 Back     alignment and function description
>sp|Q0DXZ1|CSLE2_ORYSJ Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1 Back     alignment and function description
>sp|Q84M43|CESA2_ORYSJ Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1 Back     alignment and function description
>sp|A2XN66|CESA2_ORYSI Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1 Back     alignment and function description
>sp|Q84ZN6|CESA8_ORYSJ Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
359473934 728 PREDICTED: cellulose synthase-like prote 0.770 0.383 0.574 4e-89
297742364 573 unnamed protein product [Vitis vinifera] 0.770 0.486 0.574 6e-89
225426270 728 PREDICTED: cellulose synthase-like prote 0.917 0.456 0.492 4e-88
147789902 728 hypothetical protein VITISV_000324 [Viti 0.770 0.383 0.567 2e-87
255555635 747 transferase, putative [Ricinus communis] 0.723 0.350 0.609 8e-87
225426272 871 PREDICTED: cellulose synthase-like prote 0.712 0.296 0.593 2e-86
297742365 726 unnamed protein product [Vitis vinifera] 0.712 0.355 0.593 2e-86
224072238 732 predicted protein [Populus trichocarpa] 0.903 0.446 0.502 7e-85
224147221 537 predicted protein [Populus trichocarpa] 0.895 0.603 0.498 9e-85
73624747 744 cellulose synthase-like protein CslG [Ni 0.718 0.349 0.564 1e-84
>gi|359473934|ref|XP_002265085.2| PREDICTED: cellulose synthase-like protein G3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 162/282 (57%), Positives = 213/282 (75%), Gaps = 3/282 (1%)

Query: 76  FAAHWLPFCRKFNLMERNP-RAYFSSSSSTSTHACCSEIKRWAIGLLEVAFSRYCPITFG 134
           F   +L  C+ +  +  NP R  F  +S  + H+  ++I RW++GLLEVAF RY PITFG
Sbjct: 444 FYTGYLLQCKGWKSIFCNPKRPAFLGNSPINLHSILNQIMRWSVGLLEVAFCRYSPITFG 503

Query: 135 IRTMG-LMGLAYAHYSFWPIWSIPIMVYAFLPQLALASGISIFPKISEPGFLLYLFLFLG 193
           ++++  L GL YAHY+FW IWSIPI +YAF+PQLAL +  SIFPK SEP FLLY+FLFLG
Sbjct: 504 VKSINPLTGLCYAHYAFWSIWSIPITIYAFVPQLALLNCASIFPKASEPWFLLYIFLFLG 563

Query: 194 AYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKSLGISAFGFNVTSKVV 253
           AYGQ+CL+F+L+G + ++WWN+QR+W IRGLS  +FG  EY LK +GIS FGFNVTSKVV
Sbjct: 564 AYGQECLEFMLDGESIQRWWNNQRMWTIRGLSSFIFGLAEYWLKFIGISTFGFNVTSKVV 623

Query: 254 DDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLA 313
           D+EQSK Y+Q + DFGVPSP+F+ +  AA++N  SF +G + ++    D EGL +QMLLA
Sbjct: 624 DEEQSKRYNQGIFDFGVPSPLFLPITTAAVINLVSFLWGIVHVL-KQRDLEGLFMQMLLA 682

Query: 314 GFIMLNCWPVYEAMVLRTDKGKMPTKVTIIAAFLAWTLYAAA 355
            F ++NCWP+YEAMVLRTD+GKMP K+T+I+  LAW LY  A
Sbjct: 683 SFAIVNCWPLYEAMVLRTDEGKMPVKITLISITLAWALYLVA 724

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297742364|emb|CBI34513.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225426270|ref|XP_002264890.1| PREDICTED: cellulose synthase-like protein G3 [Vitis vinifera] gi|297742371|emb|CBI34520.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147789902|emb|CAN71761.1| hypothetical protein VITISV_000324 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255555635|ref|XP_002518853.1| transferase, putative [Ricinus communis] gi|223541840|gb|EEF43386.1| transferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225426272|ref|XP_002265006.1| PREDICTED: cellulose synthase-like protein G3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742365|emb|CBI34514.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224072238|ref|XP_002303667.1| predicted protein [Populus trichocarpa] gi|222841099|gb|EEE78646.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224147221|ref|XP_002336431.1| predicted protein [Populus trichocarpa] gi|222834997|gb|EEE73446.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|73624747|gb|AAZ79231.1| cellulose synthase-like protein CslG [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
TAIR|locus:2138106751 CSLG3 "AT4G23990" [Arabidopsis 0.635 0.306 0.523 9.1e-88
TAIR|locus:2138116722 CSLG2 "AT4G24000" [Arabidopsis 0.624 0.313 0.506 1.2e-85
TAIR|locus:2138126760 CSLG1 "AT4G24010" [Arabidopsis 0.621 0.296 0.495 1.5e-81
TAIR|locus:2012050729 CSLE1 "AT1G55850" [Arabidopsis 0.712 0.353 0.342 2.8e-62
TAIR|locus:21363081084 CESA2 "cellulose synthase A2" 0.607 0.202 0.306 2.9e-39
TAIR|locus:21789351026 IRX3 "IRREGULAR XYLEM 3" [Arab 0.613 0.216 0.284 1e-38
TAIR|locus:20525761088 CESA9 "cellulose synthase A9" 0.607 0.202 0.298 4.3e-38
TAIR|locus:21781931069 CESA5 "cellulose synthase 5" [ 0.613 0.207 0.300 4.2e-37
TAIR|locus:21760901084 CESA6 "cellulose synthase 6" [ 0.610 0.203 0.299 7.2e-37
TAIR|locus:21567891065 CEV1 "CONSTITUTIVE EXPRESSION 0.613 0.208 0.292 8.8e-37
TAIR|locus:2138106 CSLG3 "AT4G23990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 637 (229.3 bits), Expect = 9.1e-88, Sum P(2) = 9.1e-88
 Identities = 123/235 (52%), Positives = 159/235 (67%)

Query:   111 SEIKRWAIGLLEVAFSRYCPITFGIRTMGLM-GLAYAHYSFWPIWSIPIMVYAFLPQLAL 169
             S+ KRWAIGLLEVA SRY PIT+G+++MGL+ G+ Y  Y+ W  WS+P++VY FLPQLAL
Sbjct:   503 SQQKRWAIGLLEVAISRYSPITYGVKSMGLVTGVGYCQYACWAFWSLPLIVYGFLPQLAL 562

Query:   170 ASGISIFPKISEPXXXXXXXXXXXXXXQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLF 229
                 S+FPK S+P              QD LDF+LEGGT+  WWNDQR+W IRG S HLF
Sbjct:   563 LYQSSVFPKSSDPWFWLYIVLFLGAYGQDLLDFVLEGGTYGGWWNDQRMWSIRGFSSHLF 622

Query:   230 GTLEYLLKSLGISAFGFNVTSKVVDDE-QSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFS 288
             G +E+ LK+L +S  GFNVTSK  DDE QSK Y +E+ +FG  S MF+ L   AIVN  +
Sbjct:   623 GFIEFTLKTLNLSTHGFNVTSKANDDEEQSKRYEKEIFEFGPSSSMFLPLTTVAIVNLLA 682

Query:   289 FSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTII 343
             F +G   +       EGL L+++LA F ++NC P+YEAMVLR D GK+P +V  +
Sbjct:   683 FVWGLYGLFAWG---EGLVLELMLASFAVVNCLPIYEAMVLRIDDGKLPKRVCFV 734
GO:0000271 "polysaccharide biosynthetic process" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0016740 "transferase activity" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0016759 "cellulose synthase activity" evidence=ISS
GO:0016760 "cellulose synthase (UDP-forming) activity" evidence=IEA
GO:0030244 "cellulose biosynthetic process" evidence=IEA
TAIR|locus:2138116 CSLG2 "AT4G24000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138126 CSLG1 "AT4G24010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012050 CSLE1 "AT1G55850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136308 CESA2 "cellulose synthase A2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178935 IRX3 "IRREGULAR XYLEM 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052576 CESA9 "cellulose synthase A9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178193 CESA5 "cellulose synthase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176090 CESA6 "cellulose synthase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156789 CEV1 "CONSTITUTIVE EXPRESSION OF VSP 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
PLN02893734 PLN02893, PLN02893, Cellulose synthase-like protei 1e-148
PLN02893 734 PLN02893, PLN02893, Cellulose synthase-like protei 8e-48
PLN02248 1135 PLN02248, PLN02248, cellulose synthase-like protei 9e-30
pfam03552 716 pfam03552, Cellulose_synt, Cellulose synthase 7e-28
PLN021891040 PLN02189, PLN02189, cellulose synthase 7e-27
PLN024001085 PLN02400, PLN02400, cellulose synthase 1e-26
PLN026381079 PLN02638, PLN02638, cellulose synthase A (UDP-form 4e-26
PLN024361094 PLN02436, PLN02436, cellulose synthase A 5e-25
pfam03552716 pfam03552, Cellulose_synt, Cellulose synthase 1e-24
PLN02189 1040 PLN02189, PLN02189, cellulose synthase 1e-23
PLN029151044 PLN02915, PLN02915, cellulose synthase A [UDP-form 2e-23
PLN02400 1085 PLN02400, PLN02400, cellulose synthase 3e-23
PLN02195977 PLN02195, PLN02195, cellulose synthase A 3e-23
PLN02436 1094 PLN02436, PLN02436, cellulose synthase A 4e-23
PLN02190 756 PLN02190, PLN02190, cellulose synthase-like protei 7e-23
PLN02638 1079 PLN02638, PLN02638, cellulose synthase A (UDP-form 1e-22
PLN02195 977 PLN02195, PLN02195, cellulose synthase A 2e-22
PLN02915 1044 PLN02915, PLN02915, cellulose synthase A [UDP-form 5e-22
PLN022481135 PLN02248, PLN02248, cellulose synthase-like protei 5e-14
PLN02190756 PLN02190, PLN02190, cellulose synthase-like protei 1e-12
TIGR03030 713 TIGR03030, CelA, cellulose synthase catalytic subu 1e-05
cd06421234 cd06421, CESA_CelA_like, CESA_CelA_like are involv 2e-04
>gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein Back     alignment and domain information 
 Score =  434 bits (1118), Expect = e-148
 Identities = 171/266 (64%), Positives = 209/266 (78%), Gaps = 3/266 (1%)

Query: 93  NP-RAYFSSSSSTSTHACCSEIKRWAIGLLEVAFSRYCPITFGIRTMG-LMGLAYAHYSF 150
           NP R  F   S  + H   ++ KRW++GLLEVAFS+Y PITFG++++G LMGL YAHY+F
Sbjct: 466 NPKRPAFLGDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGVKSIGLLMGLGYAHYAF 525

Query: 151 WPIWSIPIMVYAFLPQLALASGISIFPKISEPGFLLYLFLFLGAYGQDCLDFLLEGGTFR 210
           WPIWSIPI +YAFLPQLAL +G+SIFPK S+P F LY+FLFLGAYGQD LDFLL GGT +
Sbjct: 526 WPIWSIPITIYAFLPQLALLNGVSIFPKASDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQ 585

Query: 211 KWWNDQRIWLIRGLSCHLFGTLEYLLKSLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGV 270
           +WWNDQR+W+IRGLS  LFG +E+LLK+LGIS FGFNVTSKVVD+EQSK Y Q + +FGV
Sbjct: 586 RWWNDQRMWMIRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVVDEEQSKRYEQGIFEFGV 645

Query: 271 PSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLR 330
            SPMF+ L  AAI+N  SF +G  Q I    + EGL LQM LAGF ++NCWP+YEAMVLR
Sbjct: 646 SSPMFLPLTTAAIINLVSFLWGIAQ-IFRQRNLEGLFLQMFLAGFAVVNCWPIYEAMVLR 704

Query: 331 TDKGKMPTKVTIIAAFLAWTLYAAAF 356
           TD GK+P K+T+I+  LAW LY A+ 
Sbjct: 705 TDDGKLPVKITLISIVLAWALYLASS 730

Length = 734
>gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein Back     alignment and domain information
>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein Back     alignment and domain information
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase Back     alignment and domain information
>gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase Back     alignment and domain information
>gnl|CDD|215224 PLN02400, PLN02400, cellulose synthase Back     alignment and domain information
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit Back     alignment and domain information
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A Back     alignment and domain information
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase Back     alignment and domain information
>gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase Back     alignment and domain information
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic subunit Back     alignment and domain information
>gnl|CDD|215224 PLN02400, PLN02400, cellulose synthase Back     alignment and domain information
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A Back     alignment and domain information
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A Back     alignment and domain information
>gnl|CDD|215122 PLN02190, PLN02190, cellulose synthase-like protein Back     alignment and domain information
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit Back     alignment and domain information
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A Back     alignment and domain information
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic subunit Back     alignment and domain information
>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein Back     alignment and domain information
>gnl|CDD|215122 PLN02190, PLN02190, cellulose synthase-like protein Back     alignment and domain information
>gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming) Back     alignment and domain information
>gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 362
PLN02893734 Cellulose synthase-like protein 100.0
PF03552720 Cellulose_synt: Cellulose synthase; InterPro: IPR0 100.0
PLN02195977 cellulose synthase A 100.0
PLN024001085 cellulose synthase 100.0
PLN026381079 cellulose synthase A (UDP-forming), catalytic subu 100.0
PLN021891040 cellulose synthase 100.0
PLN024361094 cellulose synthase A 100.0
PLN02190756 cellulose synthase-like protein 100.0
PLN029151044 cellulose synthase A [UDP-forming], catalytic subu 100.0
PLN022481135 cellulose synthase-like protein 100.0
PRK11498 852 bcsA cellulose synthase catalytic subunit; Provisi 100.0
TIGR03030 713 CelA cellulose synthase catalytic subunit (UDP-for 100.0
PRK05454691 glucosyltransferase MdoH; Provisional 98.85
TIGR03111439 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 98.77
PRK14583444 hmsR N-glycosyltransferase; Provisional 98.63
COG1215439 Glycosyltransferases, probably involved in cell wa 98.59
PRK11204420 N-glycosyltransferase; Provisional 98.52
cd04191254 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon 98.18
PRK14716504 bacteriophage N4 adsorption protein B; Provisional 97.94
PF13632193 Glyco_trans_2_3: Glycosyl transferase family group 97.68
cd04190244 Chitin_synth_C C-terminal domain of Chitin Synthas 97.64
PRK11234 727 nfrB bacteriophage N4 adsorption protein B; Provis 97.61
cd06435236 CESA_NdvC_like NdvC_like proteins in this family a 97.32
cd06427241 CESA_like_2 CESA_like_2 is a member of the cellulo 97.28
cd06437232 CESA_CaSu_A2 Cellulose synthase catalytic subunit 97.23
cd06421234 CESA_CelA_like CESA_CelA_like are involved in the 97.17
PF13641228 Glyco_tranf_2_3: Glycosyltransferase like family 2 96.78
PF03142527 Chitin_synth_2: Chitin synthase; InterPro: IPR0048 95.95
cd04192229 GT_2_like_e Subfamily of Glycosyltransferase Famil 95.56
cd06434235 GT2_HAS Hyaluronan synthases catalyze polymerizati 95.43
cd02520196 Glucosylceramide_synthase Glucosylceramide synthas 93.87
KOG2571862 consensus Chitin synthase/hyaluronan synthase (gly 93.48
cd06439251 CESA_like_1 CESA_like_1 is a member of the cellulo 93.37
COG2943 736 MdoH Membrane glycosyltransferase [Cell envelope b 93.12
TIGR03472373 HpnI hopanoid biosynthesis associated glycosyl tra 92.58
cd04190244 Chitin_synth_C C-terminal domain of Chitin Synthas 90.66
cd02525249 Succinoglycan_BP_ExoA ExoA is involved in the bios 89.91
PF13506175 Glyco_transf_21: Glycosyl transferase family 21 89.31
PRK15489 703 nfrB bacteriophage N4 adsorption protein B; Provis 87.08
COG1215439 Glycosyltransferases, probably involved in cell wa 83.43
cd06421234 CESA_CelA_like CESA_CelA_like are involved in the 80.92
>PLN02893 Cellulose synthase-like protein Back     alignment and domain information 
Probab=100.00  E-value=2.5e-90  Score=725.74  Aligned_cols=271  Identities=63%  Similarity=1.180  Sum_probs=258.5

Q ss_pred             cCCceeeecCc-cccccccCCCChhhhhHHHHHHhhhhHHHhhhhcCcccccccCCCc-hhhhhhhhhhhcchhHHHHHH
Q 041629           84 CRKFNLMERNP-RAYFSSSSSTSTHACCSEIKRWAIGLLEVAFSRYCPITFGIRTMGL-MGLAYAHYSFWPIWSIPIMVY  161 (362)
Q Consensus        84 ~rGw~s~y~~p-~~~f~GlaP~~l~~~l~QR~RWa~G~lQIf~sk~nPl~~g~~gL~l-QRL~Y~~~~~y~~~~l~~liy  161 (362)
                      ||||||+|++| +++|.|+||+|+.++++||+|||+|++||+++|+||+++|.+||++ |||+|++.++||++++|+++|
T Consensus       457 ~~GWrSvY~~p~~~af~G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~~~L~~~Qrl~Y~~~~~~~~~slp~liY  536 (734)
T PLN02893        457 CEGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGVKSIGLLMGLGYAHYAFWPIWSIPITIY  536 (734)
T ss_pred             hcCCcEEecCCCchhhccCCCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcccCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence            44588889887 6788999999999999999999999999999999999987789999 999999999999999999999


Q ss_pred             HHHHHHHHhcCCccccCCChhHHHHHHHHHHHHHHHHHHHHHHhCCccccccccchhhhhhHHHHHHHHHHHHHHHHhcc
Q 041629          162 AFLPQLALASGISIFPKISEPGFLLYLFLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKSLGI  241 (362)
Q Consensus       162 ll~P~l~Ll~Gi~i~~~~s~~~f~~f~~l~~~~~~~~lle~~~~g~s~~~wwr~qr~w~i~~~~~~l~a~~~~llk~l~~  241 (362)
                      +++|++||++|++++|+++++++++|++++++.+.++++|++|+|+++++||||||+|+|.++++|+++++++++|++|+
T Consensus       537 ~~~P~l~Ll~g~~i~p~~s~~~f~~yi~l~~s~~~~~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~  616 (734)
T PLN02893        537 AFLPQLALLNGVSIFPKASDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGI  616 (734)
T ss_pred             HHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHhccCccHhhhcchheeeehHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceeeccCCccchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHH
Q 041629          242 SAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCW  321 (362)
Q Consensus       242 ~~~~F~VT~K~~~~~~~~~~~~~~~~f~~~s~l~~P~~~ll~lnl~alv~gi~r~~~~~~~~~~~~~~~~~~~wvv~~l~  321 (362)
                      ++.+|+||+|+.++|++++|++|+|+|+|+|++++|+++++++|++|+++|+.|++.+. .++++++|+++++|++++++
T Consensus       617 s~~~F~VT~K~~~~~~~~~y~~~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~~~~~-~~~~~~~~~~~~~~~v~~~~  695 (734)
T PLN02893        617 STFGFNVTSKVVDEEQSKRYEQGIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQIFRQR-NLEGLFLQMFLAGFAVVNCW  695 (734)
T ss_pred             cCCceeecCCCcccccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHHHH
Confidence            99999999999888888899999999998899999999999999999999999998764 67888999999999999999


Q ss_pred             HHHHHHHhhhCCCCCchhhHHHHHHHHHHHHHhh
Q 041629          322 PVYEAMVLRTDKGKMPTKVTIIAAFLAWTLYAAA  355 (362)
Q Consensus       322 p~~~al~~rk~k~~iP~~v~~~s~~la~~~~~~~  355 (362)
                      |+++||++||||||||.+|++||++||+++|.+.
T Consensus       696 P~~~gl~~r~dkg~~P~~v~~~s~~l~~~~~~~~  729 (734)
T PLN02893        696 PIYEAMVLRTDDGKLPVKITLISIVLAWALYLAS  729 (734)
T ss_pred             HHHHHHhccCCCCCCCccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888764

>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals Back     alignment and domain information
>PLN02195 cellulose synthase A Back     alignment and domain information
>PLN02400 cellulose synthase Back     alignment and domain information
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit Back     alignment and domain information
>PLN02189 cellulose synthase Back     alignment and domain information
>PLN02436 cellulose synthase A Back     alignment and domain information
>PLN02190 cellulose synthase-like protein Back     alignment and domain information
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit Back     alignment and domain information
>PLN02248 cellulose synthase-like protein Back     alignment and domain information
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional Back     alignment and domain information
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming) Back     alignment and domain information
>PRK05454 glucosyltransferase MdoH; Provisional Back     alignment and domain information
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 Back     alignment and domain information
>PRK14583 hmsR N-glycosyltransferase; Provisional Back     alignment and domain information
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK11204 N-glycosyltransferase; Provisional Back     alignment and domain information
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan Back     alignment and domain information
>PRK14716 bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2 Back     alignment and domain information
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin Back     alignment and domain information
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase Back     alignment and domain information
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily Back     alignment and domain information
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex Back     alignment and domain information
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose Back     alignment and domain information
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A Back     alignment and domain information
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2 Back     alignment and domain information
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan Back     alignment and domain information
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis Back     alignment and domain information
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily Back     alignment and domain information
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI Back     alignment and domain information
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin Back     alignment and domain information
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan Back     alignment and domain information
>PF13506 Glyco_transf_21: Glycosyl transferase family 21 Back     alignment and domain information
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
4hg6_A 802 Cellulose synthase subunit A; membrane translocati 99.92
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides} Back     alignment and structure
Probab=99.92  E-value=3e-23  Score=223.55  Aligned_cols=225  Identities=16%  Similarity=0.199  Sum_probs=160.2

Q ss_pred             cccCCceeeecCccccccccCCCChhhhhHHHHHHhhhhHHHhhhhcCcccccccCCCc-hhhhhhhhhhhcchhHHHHH
Q 041629           82 PFCRKFNLMERNPRAYFSSSSSTSTHACCSEIKRWAIGLLEVAFSRYCPITFGIRTMGL-MGLAYAHYSFWPIWSIPIMV  160 (362)
Q Consensus        82 ~~~rGw~s~y~~p~~~f~GlaP~~l~~~l~QR~RWa~G~lQIf~sk~nPl~~g~~gL~l-QRL~Y~~~~~y~~~~l~~li  160 (362)
                      ++++||++.|.+ ++...+.+|+++.++++||.||++|.+|+++ +++|++.  +++++ ||++|+.+..+|+.++++++
T Consensus       350 l~~~G~ri~~~~-~~~~~~~~p~t~~~~~~Qr~RW~~G~~q~l~-~~~pl~~--~~l~~~~rl~~l~~~~~~~~~~~~li  425 (802)
T 4hg6_A          350 IHSRGWKSLYID-RAMIAGLQPETFASFIQQRGRWATGMMQMLL-LKNPLFR--RGLGIAQRLCYLNSMSFWFFPLVRMM  425 (802)
T ss_dssp             HHTTTCCEEECC-CCCEEECCCCSHHHHHHHHHHHHHHHHHHHH-HSCTTSC--SSCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHcCCeEEEec-CCEEEecCCCCHHHHHHHHHHHHccHHHHHH-HhCcccc--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            677899999975 5677899999999999999999999999987 5689874  89999 99999999999999999999


Q ss_pred             HHHHHHHHHhcCCccccCCChhHHHHHH-HHHHHHHHHHHHHHHHhCCccccccccchhhhhhHHHHHHHHHHHHHHHHh
Q 041629          161 YAFLPQLALASGISIFPKISEPGFLLYL-FLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKSL  239 (362)
Q Consensus       161 yll~P~l~Ll~Gi~i~~~~s~~~f~~f~-~l~~~~~~~~lle~~~~g~s~~~wwr~qr~w~i~~~~~~l~a~~~~llk~l  239 (362)
                      ++++|++++++|+.++......++..++ +++....+   .... .+.....||. +.+    .....++.+..++..++
T Consensus       426 ~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~~l~~~~~---~~~~-~~~~r~~~~~-~l~----~~~~~~~~~~a~l~~l~  496 (802)
T 4hg6_A          426 FLVAPLIYLFFGIEIFVATFEEVLAYMPGYLAVSFLV---QNAL-FARQRWPLVS-EVY----EVAQAPYLARAIVTTLL  496 (802)
T ss_dssp             HHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHH---HHHH-HTTTSCTTHH-HHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHHHHHH---HHHH-hcCcHHHHHH-HHH----HHHHHHHHHHHHHHHHh
Confidence            9999999999999888764333222222 22111111   1122 2221112222 222    22222333444555667


Q ss_pred             ccCCcceeeccCCccchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHH
Q 041629          240 GISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLN  319 (362)
Q Consensus       240 ~~~~~~F~VT~K~~~~~~~~~~~~~~~~f~~~s~l~~P~~~ll~lnl~alv~gi~r~~~~~~~~~~~~~~~~~~~wvv~~  319 (362)
                      ++++.+|+||+|+.+.+.  .+      +   +.+..|++++++++++++++|++++....   ......+++++|.++|
T Consensus       497 ~~~~~~f~VT~Kg~~~~~--~~------~---~~~~~p~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~w~~~~  562 (802)
T 4hg6_A          497 RPRSARFAVTAKDETLSE--NY------I---SPIYRPLLFTFLLCLSGVLATLVRWVAFP---GDRSVLLVVGGWAVLN  562 (802)
T ss_dssp             STTCCCCCCCCCCCCCSS--CC------B---CTTCHHHHHHHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHH
T ss_pred             CCCCCcceECCCCccccc--cc------h---hhHHHHHHHHHHHHHHHHHHHHHHHhccC---CccchhhhhhHHHHHH
Confidence            889999999999875422  11      2   25789999999999999999999987543   2233456678888888


Q ss_pred             HHHHHHHHHhhhCC
Q 041629          320 CWPVYEAMVLRTDK  333 (362)
Q Consensus       320 l~p~~~al~~rk~k  333 (362)
                      ++.+..++....++
T Consensus       563 l~~l~~~~~~~~~~  576 (802)
T 4hg6_A          563 VLLVGFALRAVAEK  576 (802)
T ss_dssp             HHHHHHHHTTTBCC
T ss_pred             HHHHHHHHHHHhcC
Confidence            88888877654433

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00