Citrus Sinensis ID: 041631

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MYGDAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFISKHLKNVSTRLIVVYVDEDDGTDEYYHPTDLSCMFPDETLADLSVQDLDHQQPATGVLGGPYDGIYCIFGLRDRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLGLRSFWFSVYNFKESLIPVKGVDSFSDI
ccHHHHHHHHHcccHHHHHHcccccccHHHHcccHHHHHHHHHccccccEEEEEEccccccccEEccccccccccccccccccccccccccccEEEEEEEccEEEEEEcccEEEEEEcccccEEEcccccccccccccEEEEEEEEEEEcccccEEEEEEEEEEcccccccccccEEEEEEcccccEEEEEEcccccEEccccccEEEEcccEEEEEEEccccEEEEEEEEccccEEEEEccccccccccccEEEEEccEEEEEEEEccccEEEEEEEccccEEEEEEEccccccccEEEEEcccEEEEEcccccEEEEEEccccEEEEEEEEcccEEEEEEEccccccccccccccc
ccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccEEEEEEEcccccccEcccccccccccccccEccccccccccccEEEEEEcccEEEEEEcccccEEEEccccccEEEcccccccccccccEEEEEEEEccccccccEEEEEEEEccccccccccccEEEEEEEcccccEEEEEEccccccccccccccEEEEEEEEEEEEEcccccEEEEEEEcccccccccccccccccccEEEEEEEccEEEEEEEcccccEEEEEEEEccEEEEEEEEcccccccEEEEEEccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEEccccEEEEccccccccc
MYGDAMVEILSTLSVKNLLRFKCVCKSwyslienpifISKHLKNVSTRLIVVYVdeddgtdeyyhptdlscmfpdetladlsvqdldhqqpatgvlggpydgiycIFGLRdritlwnvatrdsrtlpnygptcppntkvyktsvgfgldpnrndyKLIMIYTYWDERTTELHEFSLCTiynlrtnswrdlVCFKtihyciphshgctylDGLCHWLWELEDSKHKIIISFDMANEVfqevqcpdiassaYMETLDLYHDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLlgveeplgvwnnggffvqsdsrprrlllydpntqemrDLGLRSFWFSVYNFkeslipvkgvdsfsdi
MYGDAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIfiskhlknvSTRLIVVYVDEDDGTDEYYHPTDLSCMFPDETLADLSVQDLDHQqpatgvlggpyDGIYCIFGLRDRITLWNvatrdsrtlpnygptcppntkVYKTsvgfgldpnrnDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGgffvqsdsrprrLLLYDPNTQEMRDLGLRSFWFSVYNFkeslipvkgvdsfsdi
MYGDAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFISKHLKNVSTRLIVVYVDEDDGTDEYYHPTDLSCMFPDETLADLSVQDLDHQQPATGVLGGPYDGIYCIFGLRDRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYMETLDLYHDslsllflnttnnHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLGLRSFWFSVYNFKESLIPVKGVDSFSDI
****AMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFISKHLKNVSTRLIVVYVDEDDGTDEYYHPTDLSCMFPDETLADLSVQDLDHQQPATGVLGGPYDGIYCIFGLRDRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLGLRSFWFSVYNFKESLIPVKG*******
MYGDAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFISKHLKNVSTRLIVVYVDEDDGTDEYYHPTDLSCMFPDETLADLSVQDLDHQQPATGVLGGPYDGIYCIFGLRDRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLGLRSFWFSVYNFKESLIPV*********
MYGDAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFISKHLKNVSTRLIVVYVDEDDGTDEYYHPTDLSCMFPDETLADLSVQDLDHQQPATGVLGGPYDGIYCIFGLRDRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLGLRSFWFSVYNFKESLIPVKGVDSFSDI
MYGDAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFISKHLKNVSTRLIVVYVDEDDGTDEYYHPTDLSCMFPDETLADLSVQDLDHQQPATGVLGGPYDGIYCIFGLRDRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLGLRSFWFSVYNFKESLIPVKGVDS****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MYGDAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFISKHLKNVSTRLIVVYVDEDDGTDEYYHPTDLSCMFPDETLADLSVQDLDHQQPATGVLGGPYDGIYCIFGLRDRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLGLRSFWFSVYNFKESLIPVKGVDSFSDI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query358 2.2.26 [Sep-21-2011]
Q8GXC7427 F-box/kelch-repeat protei yes no 0.927 0.777 0.247 2e-13
Q9LPW2416 Putative F-box/kelch-repe no no 0.754 0.649 0.272 2e-13
Q9LU24360 Putative F-box protein At no no 0.723 0.719 0.245 4e-13
O49421411 F-box protein At4g19940 O no no 0.902 0.785 0.244 2e-11
Q9LX89445 F-box protein At5g10340 O no no 0.854 0.687 0.242 4e-11
Q9SCL2397 F-box protein At3g49450 O no no 0.726 0.654 0.257 4e-11
Q3E7D1403 F-box protein At2g40925 O no no 0.765 0.679 0.266 1e-10
Q7X7A9312 F-box protein At1g11270 O no no 0.650 0.746 0.268 2e-10
Q9FGY4359 F-box protein At5g49610 O no no 0.899 0.896 0.222 2e-10
Q9FT50390 Putative F-box protein At no no 0.631 0.579 0.273 5e-10
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function desciption
 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 168/392 (42%), Gaps = 60/392 (15%)

Query: 4   DAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFISKHL----KNVSTR-----LIVVYV 54
           + + EIL  L  K++ RF+CV K + +L  +P F   HL    +N S R     LIV   
Sbjct: 39  EIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIVSSH 98

Query: 55  D-------------EDDGTDEYYHP-TDLSCMFP------------DETLADLSVQDLDH 88
           +              D    E+ +P  D   +F             D+    L +    +
Sbjct: 99  NLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLNAKSY 158

Query: 89  QQPATGVLGGPYDGIYCIFGLRDRITLWNVATRDSRTLP-NYGPTCPPNTKVYKTSVGFG 147
           ++    ++G   +G+ CI      + L+N  T DS+ LP N+ P      +    + GFG
Sbjct: 159 RRNWVEIVGSS-NGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFG 217

Query: 148 LDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCT 207
            D   +DYKL+ +       T+E  +    ++Y+L+ +SWR +      H    ++ G  
Sbjct: 218 FDGLTDDYKLVKLVA-----TSE--DILDASVYSLKADSWRRICNLNYEHNDGSYTSG-V 269

Query: 208 YLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYMETLDLYHDSLS--LLF 265
           + +G  HW++       +++++FD+  E F+E+  PD A        +    SL+  L  
Sbjct: 270 HFNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCV 329

Query: 266 LNTTNN-HYEIWVLKE----RIWSKHLSVTLLGVEEPL-GVWNNGGFFVQSDSRPRRLLL 319
           +N+  + H +IWV+ E    + WS+     L    +PL    N+    ++ D     L+L
Sbjct: 330 VNSCYDVHDDIWVMSEYGEAKSWSRIRINLLYRSMKPLCSTKNDEEVLLELDG---DLVL 386

Query: 320 YDPNTQEMRDLGL----RSFWFSVYNFKESLI 347
           Y+  T    +LG+     S  F    + ESLI
Sbjct: 387 YNFETNASSNLGICGVKLSDGFEANTYVESLI 418

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2 Back     alignment and function description
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|O49421|FB238_ARATH F-box protein At4g19940 OS=Arabidopsis thaliana GN=At4g19940 PE=4 SV=1 Back     alignment and function description
>sp|Q9LX89|FB255_ARATH F-box protein At5g10340 OS=Arabidopsis thaliana GN=At5g10340 PE=2 SV=1 Back     alignment and function description
>sp|Q9SCL2|FB197_ARATH F-box protein At3g49450 OS=Arabidopsis thaliana GN=At3g49450 PE=2 SV=1 Back     alignment and function description
>sp|Q3E7D1|FB131_ARATH F-box protein At2g40925 OS=Arabidopsis thaliana GN=At2g40925 PE=2 SV=1 Back     alignment and function description
>sp|Q7X7A9|FB4_ARATH F-box protein At1g11270 OS=Arabidopsis thaliana GN=At1g11270 PE=2 SV=1 Back     alignment and function description
>sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1 Back     alignment and function description
>sp|Q9FT50|FB202_ARATH Putative F-box protein At3g52320 OS=Arabidopsis thaliana GN=At3g52320 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query358
224119696367 predicted protein [Populus trichocarpa] 0.927 0.904 0.366 8e-45
224133722443 predicted protein [Populus trichocarpa] 0.924 0.747 0.356 9e-41
224117590441 f-box family protein [Populus trichocarp 0.905 0.734 0.345 1e-36
224119700272 predicted protein [Populus trichocarpa] 0.689 0.908 0.377 9e-31
296090345423 unnamed protein product [Vitis vinifera] 0.899 0.761 0.283 4e-27
311334715392 S-locus linked F-box protein type-6 [Pet 0.921 0.841 0.282 6e-25
117939133416 S locus F-box protein with the low allel 0.896 0.771 0.272 1e-24
59896627389 non-S F-box protein 1 [Petunia axillaris 0.949 0.874 0.301 3e-24
148923044388 class S F-box protein [Nicotiana alata] 0.885 0.817 0.287 3e-24
311334721392 S-locus linked F-box protein type-6 [Pet 0.927 0.846 0.286 3e-24
>gi|224119696|ref|XP_002318137.1| predicted protein [Populus trichocarpa] gi|222858810|gb|EEE96357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 130/355 (36%), Positives = 191/355 (53%), Gaps = 23/355 (6%)

Query: 4   DAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFISKHLKNVSTRLIVVYVDEDDGTDEY 63
           D ++EILS L VK LL+FKCVCKSWY +I +  FIS HL N    +   ++        +
Sbjct: 12  DVIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHLNNHYNNIKSGHL-----LAHF 66

Query: 64  YHPTDLSCMFPDETLADLSVQDLDHQQPATGVLGGPYDGIYCIFGLRDRIT-LWNVATRD 122
             P  L  +F DE+L DLS Q LD   P  G L GP +GI+ +       + LWN AT++
Sbjct: 67  VCPQLLE-LFQDESLTDLSHQGLD--PPIRGRLCGPCNGIFYVDSEDSSGSGLWNPATKE 123

Query: 123 SRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIY-TYWDERTTELHEFSLCTIYN 181
            + LP            Y+ S GFG DP  NDYK+++I  +Y  E   E    SL  +Y 
Sbjct: 124 FKLLPEKIRNKSSLPLYYEDSYGFGFDPVTNDYKVVVIRESYTREYYLEKFPSSLVIVYT 183

Query: 182 LRTNSWRDLVCFKTIH--YCIPHSHGCTYLDGLCHWLWELEDSKH-KIIISFDMANEVFQ 238
           LRT+SWR   C+ ++   Y +  ++  T +DG+  + W+     H  +I+SF+MA + FQ
Sbjct: 184 LRTDSWR---CWGSLDQGYTLLGNYCYTNVDGV--YYWQAGHGVHMNVILSFNMATDAFQ 238

Query: 239 EVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKERIWSKHL-SVTLLGVEEP 297
           E+Q PD    AY   L LYHDS++   ++      +IWVL E  W +   S  LL +  P
Sbjct: 239 EIQEPDYDKPAYSTRLILYHDSIAFSTVHNVEKFLDIWVLNEGCWIRQFKSRPLLELRNP 298

Query: 298 LGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLGLR--SFWFSVYNFKESLIPVK 350
           +  W NG   + SD+   +L+LYD N QE++DL  +     + +  ++ESL+ +K
Sbjct: 299 VAHWKNGNVILDSDN--DQLMLYDTNKQELKDLRFKGTGVCYEILVYRESLVSIK 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224133722|ref|XP_002327664.1| predicted protein [Populus trichocarpa] gi|222836749|gb|EEE75142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117590|ref|XP_002331674.1| f-box family protein [Populus trichocarpa] gi|222874093|gb|EEF11224.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224119700|ref|XP_002318138.1| predicted protein [Populus trichocarpa] gi|222858811|gb|EEE96358.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296090345|emb|CBI40164.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|311334715|dbj|BAJ24877.1| S-locus linked F-box protein type-6 [Petunia x hybrida] Back     alignment and taxonomy information
>gi|117939133|dbj|BAF36715.1| S locus F-box protein with the low allelic sequence polymorphism 3-S4 [Prunus avium] Back     alignment and taxonomy information
>gi|59896627|gb|AAX11682.1| non-S F-box protein 1 [Petunia axillaris subsp. axillaris] Back     alignment and taxonomy information
>gi|148923044|gb|ABR18786.1| class S F-box protein [Nicotiana alata] Back     alignment and taxonomy information
>gi|311334721|dbj|BAJ24880.1| S-locus linked F-box protein type-6 [Petunia axillaris subsp. axillaris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query358
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.843 0.829 0.274 1.1e-15
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.684 0.573 0.252 4.9e-14
TAIR|locus:2100524390 AT3G52320 "AT3G52320" [Arabido 0.631 0.579 0.269 3.7e-13
TAIR|locus:2010316416 AT1G12870 "AT1G12870" [Arabido 0.756 0.651 0.261 6.5e-12
TAIR|locus:2157834359 AT5G49610 "AT5G49610" [Arabido 0.896 0.894 0.227 9.6e-12
TAIR|locus:2119787411 AT4G19940 "AT4G19940" [Arabido 0.779 0.678 0.243 1.4e-11
TAIR|locus:2154169420 AT5G62510 "AT5G62510" [Arabido 0.891 0.759 0.261 1.5e-11
TAIR|locus:2202099312 AT1G11270 "AT1G11270" [Arabido 0.608 0.698 0.282 3.9e-11
TAIR|locus:2114673397 AT3G49450 "AT3G49450" [Arabido 0.648 0.584 0.259 4.9e-11
TAIR|locus:2825822475 AT1G46840 "AT1G46840" [Arabido 0.846 0.637 0.246 7.4e-11
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 216 (81.1 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 91/331 (27%), Positives = 136/331 (41%)

Query:     4 DAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFISKHLKNVSTRLIVVYVDEDDG--TD 61
             + M EIL  L VK+L RFKCVC SW SLI   +F  KH   + T           G  T 
Sbjct:    17 EMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGVITT 76

Query:    62 EYYHPTDLSCMFPDETLADLSVQDLDHQQPATGV--LGGPYDGIYCIFGLRDR-ITLWNV 118
               YH     C+      + + V + D +        + G   G+ C     D+ + LWN 
Sbjct:    77 SRYHLKSC-CIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCFHVDYDKSLYLWNP 135

Query:   119 ATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCT 178
               +  + L +       +  V   + GFG D + +DYK++ +     +R    H+  + T
Sbjct:   136 TIKLQQRLSSSDLETSDDECV--VTYGFGYDESEDDYKVVALL---QQR----HQVKIET 186

Query:   179 -IYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVF 237
              IY+ R   WR    F +       S    Y++G  +W      S    IIS+DM+ + F
Sbjct:   187 KIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWA-ATSSSSSWTIISYDMSRDEF 245

Query:   238 QEVQCPDIAS-SAYMETL-DLYHDXXXXXXXXXXXXHYEIWVLKE----RIWSKHLSVT- 290
             +E+  P       +  TL DL               + ++WV+KE      WSK LS+  
Sbjct:   246 KELPGPVCCGRGCFTMTLGDLR--GCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSIPG 303

Query:   291 LLGVEEPLGVWNNGGFFVQSDSRPRRLLLYD 321
             L     PL  W + G  V  + R   L LY+
Sbjct:   304 LTDFVRPL--WISDGLVVLLEFRSG-LALYN 331
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005634 "nucleus" evidence=IDA
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100524 AT3G52320 "AT3G52320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010316 AT1G12870 "AT1G12870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157834 AT5G49610 "AT5G49610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119787 AT4G19940 "AT4G19940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154169 AT5G62510 "AT5G62510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202099 AT1G11270 "AT1G11270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2114673 AT3G49450 "AT3G49450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825822 AT1G46840 "AT1G46840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00120932
hypothetical protein (367 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 3e-19
pfam0064648 pfam00646, F-box, F-box domain 4e-06
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 4e-05
pfam1293747 pfam12937, F-box-like, F-box-like 0.002
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 85.1 bits (211), Expect = 3e-19
 Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 29/243 (11%)

Query: 98  GPYDGIYCIFGLRDRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSV--GFGLDPNRNDY 155
            P DG+ C F    R+ +WN +T  SR LP      P + +  K S     G DP    Y
Sbjct: 2   VPCDGLIC-FSYGKRLVVWNPSTGQSRWLP-----TPKSRRSNKESDTYFLGYDPIEKQY 55

Query: 156 KLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHW 215
           K++        R    H+     +Y L +NSWR + C        P       ++G+ ++
Sbjct: 56  KVLCFSDRSGNRNQSEHQ-----VYTLGSNSWRTIECS---PPHHPLKSRGVCINGVLYY 107

Query: 216 LWELEDSKHKI-IISFDMANEVFQEVQCPDIASSAYMETLDL--YHDSLSLLFLNTTNNH 272
           L     +     I+SFD+++E F+E       +S  ++ L L  Y   L++L      N+
Sbjct: 108 LAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNN 167

Query: 273 YEIWVLK---ERIWSKHLSVT------LLGVEEPLGVWNNGGFFV-QSDSRPRRLLLYDP 322
           +++WVL    ++ WSK  +V       L+      G  + G   +   D  P  +  Y+ 
Sbjct: 168 FDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNV 227

Query: 323 NTQ 325
              
Sbjct: 228 GEN 230

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 358
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.68
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.66
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.46
PHA02713557 hypothetical protein; Provisional 98.87
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.8
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.72
PLN02153341 epithiospecifier protein 98.7
PHA03098534 kelch-like protein; Provisional 98.7
PHA02713557 hypothetical protein; Provisional 98.7
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.69
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.64
PLN02193470 nitrile-specifier protein 98.59
PHA02790480 Kelch-like protein; Provisional 98.59
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.49
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.44
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.42
PLN02193470 nitrile-specifier protein 98.35
PLN02153341 epithiospecifier protein 98.28
PHA03098534 kelch-like protein; Provisional 98.22
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.13
PHA02790480 Kelch-like protein; Provisional 98.07
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 97.91
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 97.86
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 97.31
KOG4693392 consensus Uncharacterized conserved protein, conta 97.17
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 96.91
KOG1230 521 consensus Protein containing repeated kelch motifs 96.78
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.65
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.32
KOG2997366 consensus F-box protein FBX9 [General function pre 96.27
KOG0281499 consensus Beta-TrCP (transducin repeats containing 95.96
KOG1230 521 consensus Protein containing repeated kelch motifs 95.6
KOG4693392 consensus Uncharacterized conserved protein, conta 95.02
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 94.91
smart00284255 OLF Olfactomedin-like domains. 93.01
PF1396450 Kelch_6: Kelch motif 92.82
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 91.23
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 90.15
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 89.61
KOG2055 514 consensus WD40 repeat protein [General function pr 89.31
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 88.91
KOG0310 487 consensus Conserved WD40 repeat-containing protein 88.82
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 88.6
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 87.74
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 87.56
PF1396450 Kelch_6: Kelch motif 87.37
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 87.36
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 85.97
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 85.83
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 84.8
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 84.2
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 82.0
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 81.31
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 80.84
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=5.6e-35  Score=254.05  Aligned_cols=217  Identities=24%  Similarity=0.395  Sum_probs=162.6

Q ss_pred             eeeecceEEEeecCCeeEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeE
Q 041631           97 GGPYDGIYCIFGLRDRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSL  176 (358)
Q Consensus        97 ~~s~~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~  176 (358)
                      ++|||||||+... ..++||||+||+++.||+++....  . .....++||||+.+++||||++......  .....+| 
T Consensus         1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~--~-~~~~~~~~G~d~~~~~YKVv~~~~~~~~--~~~~~~~-   73 (230)
T TIGR01640         1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRS--N-KESDTYFLGYDPIEKQYKVLCFSDRSGN--RNQSEHQ-   73 (230)
T ss_pred             CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCccc--c-cccceEEEeecccCCcEEEEEEEeecCC--CCCccEE-
Confidence            4799999999875 457999999999999997653211  1 1122689999999999999999765321  1356788 


Q ss_pred             EEEEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecCCCc-eEEEEEECCCceEE-EecCCCCcccc-cccc
Q 041631          177 CTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKH-KIIISFDMANEVFQ-EVQCPDIASSA-YMET  253 (358)
Q Consensus       177 ~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~il~fD~~~e~~~-~i~~P~~~~~~-~~~~  253 (358)
                        ||++++++||.+...+  +....... +|++||++||++....... ..|++||+++|+|+ .+++|...... ....
T Consensus        74 --Vys~~~~~Wr~~~~~~--~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~  148 (230)
T TIGR01640        74 --VYTLGSNSWRTIECSP--PHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS  148 (230)
T ss_pred             --EEEeCCCCccccccCC--CCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence              9999999999987411  11112223 8999999999998654222 38999999999999 58998765321 1237


Q ss_pred             eeEECCeEEEEEecCCCcEEEEEEECC---CeeeEEEEEccC---Cc---cceEEEeeCCcEEEEecCCCCE-EEEEeCC
Q 041631          254 LDLYHDSLSLLFLNTTNNHYEIWVLKE---RIWSKHLSVTLL---GV---EEPLGVWNNGGFFVQSDSRPRR-LLLYDPN  323 (358)
Q Consensus       254 L~~~~g~L~~~~~~~~~~~l~IW~l~~---~~W~~~~~i~~~---~~---~~p~~~~~~g~i~~~~~~~~~~-l~~yd~~  323 (358)
                      |++++|+|+++.......+++||+|++   .+|+|.++|+..   .+   ..|+++.++|+|++........ +++||++
T Consensus       149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~  228 (230)
T TIGR01640       149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG  228 (230)
T ss_pred             EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEecc
Confidence            999999999998754445799999997   679999999742   22   3478888999999987621144 9999998


Q ss_pred             CC
Q 041631          324 TQ  325 (358)
Q Consensus       324 t~  325 (358)
                      ++
T Consensus       229 ~~  230 (230)
T TIGR01640       229 EN  230 (230)
T ss_pred             CC
Confidence            75

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 51/322 (15%), Positives = 93/322 (28%), Gaps = 94/322 (29%)

Query: 45  VSTRLIVVYVDEDDGTDEYYHPT--DLSCMF-PDETLA------DLSVQDLDHQQPATGV 95
           ++TR   V  D         H +    S    PDE  +      D   QDL    P   +
Sbjct: 270 LTTRFKQV-TDFLSAA-TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----PREVL 323

Query: 96  LGGPYDGIYCIFG--LRDRITLWNVATRDSRTLPNYG-PTCPPNTKVYKTSVGFGLDPN- 151
              P      I    +RD +  W+          N+    C   T + ++S+   L+P  
Sbjct: 324 TTNPR--RLSIIAESIRDGLATWD----------NWKHVNCDKLTTIIESSLNV-LEPAE 370

Query: 152 -RNDYKLIMIY------------TYWDERTTE--------LHEFSLCTIYNLRTNSWRDL 190
            R  +  + ++              W +            LH++SL              
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-------EKQP-- 421

Query: 191 VCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAY 250
              K     I       YL+       E E + H+ I+      + F            Y
Sbjct: 422 ---KESTISI---PSI-YLELKVKL--ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 251 --------METLDLYH--DSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLLGVEEPLGV 300
                   ++ ++         ++FL+        + L+++I  +H S         L  
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFR------F-LEQKI--RHDSTAWNASGSILNT 523

Query: 301 WNN----GGFFVQSDSRPRRLL 318
                    +   +D +  RL+
Sbjct: 524 LQQLKFYKPYICDNDPKYERLV 545
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query358
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.15
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.14
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.11
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.08
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.05
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.01
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 98.97
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.97
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.9
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.89
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.85
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.85
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.79
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.73
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.61
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.58
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.58
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.48
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.43
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.4
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.92
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.67
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.61
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.53
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.07
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.36
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.0
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 92.12
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 92.09
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 91.56
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 89.96
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 89.96
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 89.89
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 89.47
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 87.02
3jrp_A 379 Fusion protein of protein transport protein SEC13 87.02
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 85.6
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 85.52
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 85.15
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 84.74
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 84.68
2dg1_A 333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 84.49
3hrp_A 409 Uncharacterized protein; NP_812590.1, structural g 84.28
3g4e_A 297 Regucalcin; six bladed beta-propeller, gluconolcat 84.21
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 83.19
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 82.54
3tc9_A 430 Hypothetical hydrolase; 6-bladed beta-propeller, i 82.39
1ri6_A 343 Putative isomerase YBHE; 7-bladed propeller, enzym 82.23
2p4o_A 306 Hypothetical protein; putative lactonase, structur 82.14
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 81.89
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 81.75
4hw6_A 433 Hypothetical protein, IPT/TIG domain protein; puta 81.37
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 81.35
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 80.38
2qc5_A 300 Streptogramin B lactonase; beta propeller, lyase; 80.37
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 80.11
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
Probab=99.15  E-value=2.3e-08  Score=89.62  Aligned_cols=238  Identities=10%  Similarity=0.002  Sum_probs=139.7

Q ss_pred             ceeeccCCCccccccCcCCCCCCCCccEEeeeecceEEEeecC--------C----eeEEEecCccceecCCCCCCCCCC
Q 041631           68 DLSCMFPDETLADLSVQDLDHQQPATGVLGGPYDGIYCIFGLR--------D----RITLWNVATRDSRTLPNYGPTCPP  135 (358)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~GLl~l~~~~--------~----~~~V~NP~T~~~~~LP~~~~~~~~  135 (358)
                      ...|++..+.|..   ..++.|.+.........+|.|.+..+.        .    .++++||.|++|..+|+.+..   
T Consensus        15 ~~~yd~~~~~W~~---~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---   88 (315)
T 4asc_A           15 AVAYDPAANECYC---ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSP---   88 (315)
T ss_dssp             EEEEETTTTEEEE---EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSC---
T ss_pred             eEEECCCCCeEec---CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcc---
Confidence            4555555555522   222222222234444556666555431        1    148899999999999876632   


Q ss_pred             CCCcccceEEEeeeCCCCCEEEEEEEEEec-CCCcccceeeEEEEEecCCCCceecccccCeeeeecCCcceEEeCCeEE
Q 041631          136 NTKVYKTSVGFGLDPNRNDYKLIMIYTYWD-ERTTELHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCH  214 (358)
Q Consensus       136 ~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-~~~~~~~~~e~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~ly  214 (358)
                         +....+.. ++    + +++.+..... ........++   +|+..+++|+..+.   +|..... ..++.++|.+|
T Consensus        89 ---r~~~~~~~-~~----~-~lyv~GG~~~~~~~~~~~~~~---~~d~~~~~W~~~~~---~p~~r~~-~~~~~~~~~iy  152 (315)
T 4asc_A           89 ---RCLFGLGE-AL----N-SIYVVGGREIKDGERCLDSVM---CYDRLSFKWGESDP---LPYVVYG-HTVLSHMDLVY  152 (315)
T ss_dssp             ---EESCEEEE-ET----T-EEEEECCEESSTTCCBCCCEE---EEETTTTEEEECCC---CSSCCBS-CEEEEETTEEE
T ss_pred             ---hhceeEEE-EC----C-EEEEEeCCcCCCCCcccceEE---EECCCCCcEeECCC---CCCcccc-eeEEEECCEEE
Confidence               11122111 11    2 4444433221 1123355678   99999999999874   3321112 23778999999


Q ss_pred             EEEeecC--CCceEEEEEECCCceEEEec-CCCCcccccccceeEECCeEEEEEecCCC-cEEEEEEECC--CeeeEEEE
Q 041631          215 WLWELED--SKHKIIISFDMANEVFQEVQ-CPDIASSAYMETLDLYHDSLSLLFLNTTN-NHYEIWVLKE--RIWSKHLS  288 (358)
Q Consensus       215 wl~~~~~--~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~L~~~~g~L~~~~~~~~~-~~l~IW~l~~--~~W~~~~~  288 (358)
                      .+.....  .....+..||+.+.+|+.++ +|....   ....+..+|+|.++...... ..-.+|+++-  ..|+.+..
T Consensus       153 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~  229 (315)
T 4asc_A          153 VIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS---LFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA  229 (315)
T ss_dssp             EECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB---SCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred             EEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh---ceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence            8875421  22457999999999999874 343221   12566779999998854332 2347788776  89998754


Q ss_pred             EccCCccceEEEeeCCcEEEEecCC-------------CCEEEEEeCCCCcEEEee
Q 041631          289 VTLLGVEEPLGVWNNGGFFVQSDSR-------------PRRLLLYDPNTQEMRDLG  331 (358)
Q Consensus       289 i~~~~~~~p~~~~~~g~i~~~~~~~-------------~~~l~~yd~~t~~~~~v~  331 (358)
                      ++......-.+ .-+++|++..+..             ...+..||+++++|+++.
T Consensus       230 ~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  284 (315)
T 4asc_A          230 FPQERSSLSLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL  284 (315)
T ss_dssp             CSSCCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE
T ss_pred             CCCcccceeEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhc
Confidence            32211222222 2366777765410             135889999999999993
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 358
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 1e-05
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 0.002
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 4  DAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIF 37
          + ++ I S L +  LL+   VCK WY L  +   
Sbjct: 7  ELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query358
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.18
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.6
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.5
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.35
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.29
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.25
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.54
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.14
d2p4oa1 302 Hypothetical protein All0351 homologue {Nostoc pun 88.62
d2ghsa1 295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 87.47
d2dg1a1 319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 86.09
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 85.43
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 80.84
d1qfma1430 Prolyl oligopeptidase, N-terminal domain {Pig (Sus 80.36
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.4e-12  Score=77.44  Aligned_cols=37  Identities=30%  Similarity=0.657  Sum_probs=35.4

Q ss_pred             CchhHHHHHHhcCCccccceeeeccccchhhcCChHh
Q 041631            1 MYGDAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIF   37 (358)
Q Consensus         1 LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F   37 (358)
                      ||+|++.+||++||+++++|+++|||+|+++++++.+
T Consensus         4 LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           4 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             SCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            7999999999999999999999999999999998864
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure