Citrus Sinensis ID: 041634

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---

MSSIGIEDTDAKLKINSELYNALMIKKDEQKVSELCRKVPDHALYVFTIHDDTVLLMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTIQHETATRRLVRKIDYNGNTILHMAGIKIKDYGSEKMEGPALLLRDELLWYERVKSVTMAHFLNHGNNMGFTPEELFATANNELRAQSKEWLIRTTEGCSVVAFAAAYTVPGGSDENTGYPILINHLFFVAFTVSDVLSLTFSLAAVVPFLSMLTSPFRLEDCKHSLPNKMILGFTFLLLSVCLMMVAFIATILLMIKSEESWAKIMLYTCTFIPVGVFALSYFPLYITKSVTRGLNYLRDKAKIFLPQWLVNIFCFSSNSFKVKATSSSIP

cccccccccHHHHHHcHHHHHHHHHcccHHHHHHHHHHccccccEEcccccccHHHHHHHcccHHHHHHHHHHcccccHHHHHcccccccHHHcccccccHHHccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHcccccccccccccccc

cccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccccccccccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHcccEEccHHEEEEEEccccccEEEEcccccc

mssigiedtdAKLKINSELYNALMIKKDEQKVSELCRKVPDHALYVFTIHDDTVLLMATYTKKSDLVIKLLDelpdqsldKMTRqnkagntiqhETATRRLVRKIDYNGNTILHMAGIKikdygsekmegpallLRDELLWYERVKSVTMAHFLnhgnnmgftpEELFATANNELRAQSKEWLIRTTEGCSVVAFAAAytvpggsdentgypiLINHLFFVAFTVSDVLSLTFSLAAVVpflsmltspfrledckhslpnkmiLGFTFLLLSVCLMMVAFIATILLMIKSEESWAKIMLYTCTFIpvgvfalsyfplyitKSVTRGLNYLRDKAKIFLPQWLVNIFCfssnsfkvkatsssip

mssigiedtdaklKINSELYNALMIKKDEQKVSELCRKVPDHALYVFTIHDDTVLLMATYTKKSDLVIKLLDELPDQSLDkmtrqnkagntiqhetatrrlvrkidyngntILHMAGIKIKDYGSEKMEGPALLLRDELLWYERVKSVTMAHFLNHGNNMGFTPEELFATANNELRAQSKEWLIRTTEGCSVVAFAAAYTVPGGSDENTGYPILINHLFFVAFTVSDVLSLTFSLAAVVPFLSMLTSPFRLEDCKHSLPNKMILGFTFLLLSVCLMMVAFIATILLMIKSEESWAKIMLYTCTFIPVGVFALSYFPLYITKSVTRGLNYLRDKAKIFLPQWLVNIFCFssnsfkvkatsssip

************LKINSELYNALMIKKDEQKVSELCRKVPDHALYVFTIHDDTVLLMATYTKKSDLVIKLLDEL*********************TATRRLVRKIDYNGNTILHMAGIKIKDYGSEKMEGPALLLRDELLWYERVKSVTMAHFLNHGNNMGFTPEELFATANNELRAQSKEWLIRTTEGCSVVAFAAAYTVPGGSDENTGYPILINHLFFVAFTVSDVLSLTFSLAAVVPFLSMLTSPFRLEDCKHSLPNKMILGFTFLLLSVCLMMVAFIATILLMIKSEESWAKIMLYTCTFIPVGVFALSYFPLYITKSVTRGLNYLRDKAKIFLPQWLVNIFCFSSNS***********

*****************ELYNALMIKKDEQKVSELCRKVPDHALYVFTIHDDTVLLMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTIQHETATRRLVRKIDYNGNTILHMAGIKIKDYGSEKMEGPALLLRDELLWYERVKSVTMAHFLNHGNNMGFTPEELFATANNELRAQSKEWLIRTTEGCSVVAFAAAYTVPGGSDENTGYPILINHLFFVAFTVSDVLSLTFSLAAVVPFLSMLTSPFRLEDCKHSLPNKMILGFTFLLLSVCLMMVAFIATILLMIKSEESWAKIMLYTCTFIPVGVFALSYFPLYITKSVTRGLNYLRDKAKIFLPQWLVNIFCFSS*************

***IGIEDTDAKLKINSELYNALMIKKDEQKVSELCRKVPDHALYVFTIHDDTVLLMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTIQHETATRRLVRKIDYNGNTILHMAGIKIKDYGSEKMEGPALLLRDELLWYERVKSVTMAHFLNHGNNMGFTPEELFATANNELRAQSKEWLIRTTEGCSVVAFAAAYTVPGGSDENTGYPILINHLFFVAFTVSDVLSLTFSLAAVVPFLSMLTSPFRLEDCKHSLPNKMILGFTFLLLSVCLMMVAFIATILLMIKSEESWAKIMLYTCTFIPVGVFALSYFPLYITKSVTRGLNYLRDKAKIFLPQWLVNIFCFSSNSFKVKATS**I*

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		363	2.2.26 [Sep-21-2011]
Q9C7A2		590	Ankyrin repeat-containing	no	no	0.658	0.405	0.263	9e-07

>sp\|Q9C7A2\|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1	Back alignment and function desciption

 Score = 55.1 bits (131), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 126/285 (44%), Gaps = 46/285 (16%)

Query: 52  DTVLLMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTIQHETATRRLVRKIDYNGNT 111
           +T L +AT  K++++V +LL  LPD + + +TR +K    I        L  +  Y    
Sbjct: 301 NTALHVATRKKRAEIV-ELLLSLPDTNANTLTRDHKTALDIAEGLP---LSEESSYIKEC 356

Query: 112 ILHMAGIKIKDYGSEKMEGPALLLRDELLWYERVKSVTMAHFLNHGNNMGFTPEELFATA 171
           +     ++     + ++  P    RDEL       +VT        N++    E+   T 
Sbjct: 357 LARSGALR-----ANELNQP----RDELR-----STVTQIK-----NDVHIQLEQTKRTN 397

Query: 172 NN------ELRAQSKEWLIRTTEGCSVVA-------FAAAYTVPGGSDENTGYPILINHL 218
            N      ELR   +E +   T   +VVA       FAA +TVPGG D N G  +++   
Sbjct: 398 KNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGG-DNNDGSAVVVGRA 456

Query: 219 FFVAFTVSDVLSLTFSLAAVVPFLSMLTSPFRLEDCKHSLPNKMILGFTFLLLSVCLMMV 278
            F  F + + L+L  SLA VV  ++++    + E     + NK++      L S+C   V
Sbjct: 457 SFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLM-----WLASMC-TSV 510

Query: 279 AFIATILLMIKSEESW-AKIMLYTCTFIPVGVFALSYFPLYITKS 322
           AF+A+  +++  +  W A+++      I  GV  L     Y+ KS
Sbjct: 511 AFLASSYIVVGRKNEWAAELVTVVGGVIMAGV--LGTMTYYVVKS 553

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		363
224115944		579	predicted protein [Populus trichocarpa]	0.630	0.395	0.654	4e-82
224115930		551	predicted protein [Populus trichocarpa]	0.746	0.491	0.551	1e-77
224115926		370	predicted protein [Populus trichocarpa]	0.823	0.808	0.483	2e-73
359496086		1514	PREDICTED: uncharacterized protein LOC10	0.730	0.175	0.481	5e-69
359496761		490	PREDICTED: ankyrin repeat-containing pro	0.730	0.540	0.481	8e-69
147841570		636	hypothetical protein VITISV_039462 [Viti	0.730	0.416	0.481	9e-69
224115932		581	predicted protein [Populus trichocarpa]	0.559	0.349	0.609	4e-68
296080840		493	unnamed protein product [Vitis vinifera]	0.630	0.464	0.542	6e-68
224115940		581	predicted protein [Populus trichocarpa]	0.559	0.349	0.604	1e-67
359497521		512	PREDICTED: ankyrin repeat-containing pro	0.862	0.611	0.424	1e-65

>gi\|224115944\|ref\|XP_002317167.1\| predicted protein [Populus trichocarpa] gi\|222860232\|gb\|EEE97779.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 155/237 (65%), Positives = 185/237 (78%), Gaps = 8/237 (3%)

Query: 99  RRLVRKIDYNGNTILHMAGIKIKDYGS-EKMEGPALLLRDELLWYERVKSVTMAHFLNHG 157
           +RL RKID +GN+ILH  G K KD+ S EKMEGPA LL++ELLW+ERVK VT +HFLNH 
Sbjct: 312 KRLTRKIDGDGNSILHTVGRKRKDFVSDEKMEGPAFLLQEELLWFERVKEVTPSHFLNHQ 371

Query: 158 NNMGFTPEELFATANNELRAQSKEWLIRTTEGCSVVA-------FAAAYTVPGGSDENTG 210
           NNM  T E  F TAN+ELR  +KEWL  T EGCSVVA       FAAAYTVPGG +++TG
Sbjct: 372 NNMKLTAEGYFITANSELRNLAKEWLKTTAEGCSVVAVLIATVAFAAAYTVPGGPNQSTG 431

Query: 211 YPILINHLFFVAFTVSDVLSLTFSLAAVVPFLSMLTSPFRLEDCKHSLPNKMILGFTFLL 270
            P+L+N  FFV FTV+DVLSLTF+L +VV FLS+LTSPFR +D KH+LPNK+++GFTFL 
Sbjct: 432 VPVLVNKPFFVVFTVTDVLSLTFALTSVVTFLSILTSPFRFKDFKHTLPNKLMVGFTFLF 491

Query: 271 LSVCLMMVAFIATILLMIKSEESWAKIMLYTCTFIPVGVFALSYFPLYITKSVTRGL 327
           LSV +MMVAF ATI+LMI S+ESW KI LY  +FIPVG+FALSYFPLY + S T  L
Sbjct: 492 LSVAMMMVAFGATIILMIYSKESWTKITLYAVSFIPVGIFALSYFPLYPSLSKTYNL 548

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224115930\|ref\|XP_002317163.1\| predicted protein [Populus trichocarpa] gi\|222860228\|gb\|EEE97775.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224115926\|ref\|XP_002317161.1\| predicted protein [Populus trichocarpa] gi\|222860226\|gb\|EEE97773.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359496086\|ref\|XP_003635148.1\| PREDICTED: uncharacterized protein LOC100853163 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359496761\|ref\|XP_003635326.1\| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147841570\|emb\|CAN77609.1\| hypothetical protein VITISV_039462 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224115932\|ref\|XP_002317164.1\| predicted protein [Populus trichocarpa] gi\|222860229\|gb\|EEE97776.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|296080840\|emb\|CBI18764.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224115940\|ref\|XP_002317166.1\| predicted protein [Populus trichocarpa] gi\|222860231\|gb\|EEE97778.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359497521\|ref\|XP_003635551.1\| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		363
TAIR\|locus:2175448		603	AT5G04730 "AT5G04730" [Arabido	0.691	0.416	0.338	9.3e-30
TAIR\|locus:2180228		625	AT5G04690 "AT5G04690" [Arabido	0.578	0.336	0.309	1e-27
TAIR\|locus:2175413		669	AT5G04700 "AT5G04700" [Arabido	0.578	0.313	0.333	4.7e-27
TAIR\|locus:2080240		574	AT3G54070 "AT3G54070" [Arabido	0.570	0.360	0.308	1.2e-26
TAIR\|locus:2165174		347	AT5G35810 "AT5G35810" [Arabido	0.650	0.680	0.281	7.6e-25
TAIR\|locus:2075009		607	AT3G09550 [Arabidopsis thalian	0.374	0.224	0.280	4.6e-08
TAIR\|locus:2092522		590	ITN1 "INCREASED TOLERANCE TO N	0.713	0.438	0.249	1.3e-07
TAIR\|locus:2020833		616	AT1G03670 "AT1G03670" [Arabido	0.680	0.400	0.252	0.00039
TAIR\|locus:2026489		543	AT1G07710 "AT1G07710" [Arabido	0.278	0.186	0.293	0.00053

TAIR\|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 320 (117.7 bits), Expect = 9.3e-30, Sum P(2) = 9.3e-30
 Identities = 91/269 (33%), Positives = 142/269 (52%)

Query:    84 RQNKAGNTIQHETATRR--LVRKIDYNGNTILHMAG-IKIKDYGSEKMEGPALLLRDELL 140
             ++ K  N I H    R+  L+R  D   N ILH+AG +   D  S K+ G AL ++ E  
Sbjct:   340 KKEKIFNLI-HGLDDRKVTLLRSYDKGNNNILHIAGRLSTPDQLS-KISGAALKMQRESQ 397

Query:   141 WYERVKSVTMAHFLNHGNNMGFTPEELFATANNELRAQSKEWLIRTTEGCSVVA------ 194
             W++ V+S+     +   N    TP ++F   +  LR + +EW+  T   CS VA      
Sbjct:   398 WFKEVESLVSEREVVQKNKDNKTPRQIFEHYHEHLRKEGEEWMKYTATACSFVAALIATV 457

Query:   195 -FAAAYTVPGGSDENTGYPILINHLFFVAFTVSDVLSLTFSLAAVVPFLSMLTSPFRLED 253
              F A +TVPGG D  +G P+++N L F AF  +D L+   S  +V+ FLS+LTS +  +D
Sbjct:   458 TFQAIFTVPGGIDGTSGSPLILNDLHFRAFIFTDTLAFFASCISVLIFLSILTSRYSFDD 517

Query:   254 CKHSLPNKMILGFTFLLLSVCLMMVAFIATILLMIKSEESWAKIMLYTCTFIPVGVFALS 313
                SLP KMILG + L +S+  M+VAFI ++   ++ + +    +    +F P  +F + 
Sbjct:   518 FIVSLPRKMILGQSILFISIASMLVAFITSLSASMRHKPALVYPLKPLASF-PSLLFLML 576

Query:   314 YFPLY---ITKSVTRGLNYLRDKAKIFLP 339
              +PL    I+ +  + L Y RD  K +LP
Sbjct:   577 QYPLLKEMISSTYGKRLFY-RD-TKNWLP 603

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00110147	hypothetical protein (579 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		363
pfam13962		114	pfam13962, PGG, Domain of unknown function	3e-17

>gnl\|CDD\|222475 pfam13962, PGG, Domain of unknown function	Back alignment and domain information

 Score = 76.4 bits (189), Expect = 3e-17
 Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 20/118 (16%)

Query: 180 KEWLIRTTEGCSVVA-------FAAAYTVPGG-----SDENTGYPILINHL-FFVAFTVS 226
            EWL +T     VVA       FAA +T PGG        + G PIL      F AF VS
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 227 DVLSLTFSLAAVVPFLSMLTSPFRLEDCKHSLPNKMILGFTFLLLSVCLMMVAFIATI 284
           + ++   SL AV+  L ++ S  R       LP +++   T L LS+  +MVAF A  
Sbjct: 61  NTIAFVASLVAVILLLYIVPSFSR------RLP-RLLALLTLLWLSLLSLMVAFAAGS 111

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		363
KOG4412		226	consensus 26S proteasome regulatory complex, subun	99.83
PF13962		113	PGG: Domain of unknown function	99.81
KOG4412		226	consensus 26S proteasome regulatory complex, subun	99.79
KOG0509		600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.75
KOG0512		228	consensus Fetal globin-inducing factor (contains a	99.68
PHA02874		434	ankyrin repeat protein; Provisional	99.68
PHA02946		446	ankyin-like protein; Provisional	99.66
PHA02859		209	ankyrin repeat protein; Provisional	99.65
PHA02878		477	ankyrin repeat protein; Provisional	99.64
PHA02876		682	ankyrin repeat protein; Provisional	99.64
KOG0510		929	consensus Ankyrin repeat protein [General function	99.63
PHA02874		434	ankyrin repeat protein; Provisional	99.63
PHA03095		471	ankyrin-like protein; Provisional	99.63
PHA02875		413	ankyrin repeat protein; Provisional	99.63
PHA02876		682	ankyrin repeat protein; Provisional	99.62
KOG0510		929	consensus Ankyrin repeat protein [General function	99.62
PHA02791		284	ankyrin-like protein; Provisional	99.61
PHA02875		413	ankyrin repeat protein; Provisional	99.61
PHA02791		284	ankyrin-like protein; Provisional	99.6
KOG0509		600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.6
PHA02716		764	CPXV016; CPX019; EVM010; Provisional	99.59
PHA02878		477	ankyrin repeat protein; Provisional	99.59
PLN03192		823	Voltage-dependent potassium channel; Provisional	99.59
PHA02743		166	Viral ankyrin protein; Provisional	99.59
PHA03100		480	ankyrin repeat protein; Provisional	99.59
PHA02859		209	ankyrin repeat protein; Provisional	99.58
PHA02798		489	ankyrin-like protein; Provisional	99.57
PHA02989		494	ankyrin repeat protein; Provisional	99.56
PHA02741		169	hypothetical protein; Provisional	99.55
PHA03095		471	ankyrin-like protein; Provisional	99.53
PHA02716		764	CPXV016; CPX019; EVM010; Provisional	99.51
PHA02946		446	ankyin-like protein; Provisional	99.51
PHA02741		169	hypothetical protein; Provisional	99.51
PHA03100		480	ankyrin repeat protein; Provisional	99.5
PHA02736		154	Viral ankyrin protein; Provisional	99.49
KOG0195		448	consensus Integrin-linked kinase [Signal transduct	99.47
PHA02795		437	ankyrin-like protein; Provisional	99.46
PHA02884		300	ankyrin repeat protein; Provisional	99.46
KOG0508		615	consensus Ankyrin repeat protein [General function	99.44
TIGR00870		743	trp transient-receptor-potential calcium channel p	99.38
KOG4177		1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.38
PHA02736		154	Viral ankyrin protein; Provisional	99.38
PHA02989		494	ankyrin repeat protein; Provisional	99.35
KOG0505		527	consensus Myosin phosphatase, regulatory subunit [	99.35
PHA02798		489	ankyrin-like protein; Provisional	99.34
KOG0514		452	consensus Ankyrin repeat protein [General function	99.34
PHA02743		166	Viral ankyrin protein; Provisional	99.32
KOG0508		615	consensus Ankyrin repeat protein [General function	99.32
PHA02795		437	ankyrin-like protein; Provisional	99.31
PHA02917		661	ankyrin-like protein; Provisional	99.3
TIGR00870		743	trp transient-receptor-potential calcium channel p	99.29
KOG0195		448	consensus Integrin-linked kinase [Signal transduct	99.27
PF13857		56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.27
PHA02730		672	ankyrin-like protein; Provisional	99.26
KOG0507		854	consensus CASK-interacting adaptor protein (caskin	99.25
PHA02884		300	ankyrin repeat protein; Provisional	99.21
PHA02730		672	ankyrin-like protein; Provisional	99.2
PHA02792		631	ankyrin-like protein; Provisional	99.19
PF12796		89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.18
KOG0512		228	consensus Fetal globin-inducing factor (contains a	99.18
KOG4177		1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.15
PHA02917		661	ankyrin-like protein; Provisional	99.13
KOG3676		782	consensus Ca2+-permeable cation channel OSM-9 and	99.13
PLN03192		823	Voltage-dependent potassium channel; Provisional	99.12
PHA02792		631	ankyrin-like protein; Provisional	99.1
cd00204		126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.09
cd00204		126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.08
PF12796		89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.04
KOG0502		296	consensus Integral membrane ankyrin-repeat protein	99.02
COG0666		235	Arp FOG: Ankyrin repeat [General function predicti	99.0
KOG0502		296	consensus Integral membrane ankyrin-repeat protein	98.97
KOG0507		854	consensus CASK-interacting adaptor protein (caskin	98.97
KOG0505		527	consensus Myosin phosphatase, regulatory subunit [	98.93
KOG0514		452	consensus Ankyrin repeat protein [General function	98.86
PF13637		54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	98.86
PTZ00322		664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.86
PF13637		54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	98.84
KOG3676		782	consensus Ca2+-permeable cation channel OSM-9 and	98.73
KOG1710		396	consensus MYND Zn-finger and ankyrin repeat protei	98.69
PTZ00322		664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.66
KOG0515		752	consensus p53-interacting protein 53BP/ASPP, conta	98.63
PF13857		56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	98.63
KOG4214		117	consensus Myotrophin and similar proteins [Transcr	98.54
COG0666		235	Arp FOG: Ankyrin repeat [General function predicti	98.53
PF13606		30	Ank_3: Ankyrin repeat	98.43
KOG0782		1004	consensus Predicted diacylglycerol kinase [Signal	98.34
KOG0818		669	consensus GTPase-activating proteins of the GIT fa	98.29
PF00023		33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.29
KOG4214		117	consensus Myotrophin and similar proteins [Transcr	98.27
KOG0522		560	consensus Ankyrin repeat protein [General function	98.17
KOG0515		752	consensus p53-interacting protein 53BP/ASPP, conta	98.16
KOG0506		622	consensus Glutaminase (contains ankyrin repeat) [A	98.02
KOG1710		396	consensus MYND Zn-finger and ankyrin repeat protei	97.87
KOG4369		2131	consensus RTK signaling protein MASK/UNC-44 [Signa	97.82
KOG0705		749	consensus GTPase-activating protein Centaurin gamm	97.68
KOG4369		2131	consensus RTK signaling protein MASK/UNC-44 [Signa	97.65
KOG0783		1267	consensus Uncharacterized conserved protein, conta	97.63
KOG0520		975	consensus Uncharacterized conserved protein, conta	97.45
KOG0783		1267	consensus Uncharacterized conserved protein, conta	97.14
KOG0782		1004	consensus Predicted diacylglycerol kinase [Signal	97.06
KOG0506		622	consensus Glutaminase (contains ankyrin repeat) [A	97.06
KOG0521		785	consensus Putative GTPase activating proteins (GAP	96.72
PF00023		33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	96.69
KOG0522		560	consensus Ankyrin repeat protein [General function	96.66
smart00248		30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.46
KOG2384		223	consensus Major histocompatibility complex protein	96.29
PF13606		30	Ank_3: Ankyrin repeat	96.11
KOG0818		669	consensus GTPase-activating proteins of the GIT fa	96.02
KOG0511		516	consensus Ankyrin repeat protein [General function	95.79
KOG0521		785	consensus Putative GTPase activating proteins (GAP	95.78
KOG0705		749	consensus GTPase-activating protein Centaurin gamm	95.45
KOG0520		975	consensus Uncharacterized conserved protein, conta	95.35
KOG3609		822	consensus Receptor-activated Ca2+-permeable cation	94.47
KOG2505		591	consensus Ankyrin repeat protein [General function	92.13
KOG3609		822	consensus Receptor-activated Ca2+-permeable cation	87.89
KOG2384		223	consensus Major histocompatibility complex protein	85.7

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=99.83  E-value=2.9e-21  Score=166.68  Aligned_cols=144  Identities=22%  Similarity=0.118  Sum_probs=114.6

Q ss_pred             CCCCccccccccccHHHHHHHHccCChHHHHHHhhcCCCCcccccCcCCCcHHhHHHhcCcHHHHHHHHHh-CCCCchhh
Q 041634            3 SIGIEDTDAKLKINSELYNALMIKKDEQKVSELCRKVPDHALYVFTIHDDTVLLMATYTKKSDLVIKLLDE-LPDQSLDK   81 (363)
Q Consensus         3 ~~~~~~~~~~~~ln~~Lh~A~~~~g~~~~v~~lL~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiV~~LL~~-~p~~~~~~   81 (363)
                      +|-.-...++|+..++||.|+.- |..+ ++++|++.++..++..|..|+||||+||..|+.|+|+.|+.+ +|| .+  
T Consensus        26 ~~kSL~~r~dqD~Rt~LHwa~S~-g~~e-iv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad-vn--  100 (226)
T KOG4412|consen   26 DPKSLNARDDQDGRTPLHWACSF-GHVE-IVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD-VN--  100 (226)
T ss_pred             ChhhhhccccccCCceeeeeeec-Cchh-HHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC-cc--
Confidence            44344456677888999999987 7766 556666567788888899999999999999999999999999 888 55  


Q ss_pred             hhccCCCCCcHHHHHHh-------------chhhccccCCCCcHHHHHHhhCcccCccccCCchhhhHHHHHHHHHhhhh
Q 041634           82 MTRQNKAGNTIQHETAT-------------RRLVRKIDYNGNTILHMAGIKIKDYGSEKMEGPALLLRDELLWYERVKSV  148 (363)
Q Consensus        82 ~~~~d~~G~t~LH~Aa~-------------~~lin~~D~~GnT~LHlAa~~~~~~~~~~~~~~al~l~~~l~~~~~V~~~  148 (363)
                        ..++.|+|+||+|+-             ++.++.+|..|.||||-||..|..+++            +++..++.   
T Consensus       101 --a~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvi------------e~Li~~~a---  163 (226)
T KOG4412|consen  101 --ATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVI------------EYLISQGA---  163 (226)
T ss_pred             --eecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhH------------HHHHhcCC---
Confidence              689999999999996             678899999999999999999976544            22222222   


Q ss_pred             ccccccccCCCCCCCHHHHH-HHhc
Q 041634          149 TMAHFLNHGNNMGFTPEELF-ATAN  172 (363)
Q Consensus       149 ~~~~~~~~~N~~G~Tp~dl~-~~~~  172 (363)
                          ..+..|+.|+||+..+ .+.|
T Consensus       164 ----~~n~qDk~G~TpL~~al~e~~  184 (226)
T KOG4412|consen  164 ----PLNTQDKYGFTPLHHALAEGH  184 (226)
T ss_pred             ----CCCcccccCccHHHHHHhccC
Confidence                2678899999998887 3344

>PF13962 PGG: Domain of unknown function	Back alignment and domain information

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]	Back alignment and domain information

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]	Back alignment and domain information

>PHA02874 ankyrin repeat protein; Provisional	Back alignment and domain information

>PHA02946 ankyin-like protein; Provisional	Back alignment and domain information

>PHA02859 ankyrin repeat protein; Provisional	Back alignment and domain information

>PHA02878 ankyrin repeat protein; Provisional	Back alignment and domain information

>PHA02876 ankyrin repeat protein; Provisional	Back alignment and domain information

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>PHA02874 ankyrin repeat protein; Provisional	Back alignment and domain information

>PHA03095 ankyrin-like protein; Provisional	Back alignment and domain information

>PHA02875 ankyrin repeat protein; Provisional	Back alignment and domain information

>PHA02876 ankyrin repeat protein; Provisional	Back alignment and domain information

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>PHA02791 ankyrin-like protein; Provisional	Back alignment and domain information

>PHA02875 ankyrin repeat protein; Provisional	Back alignment and domain information

>PHA02791 ankyrin-like protein; Provisional	Back alignment and domain information

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]	Back alignment and domain information

>PHA02716 CPXV016; CPX019; EVM010; Provisional	Back alignment and domain information

>PHA02878 ankyrin repeat protein; Provisional	Back alignment and domain information

>PLN03192 Voltage-dependent potassium channel; Provisional	Back alignment and domain information

>PHA02743 Viral ankyrin protein; Provisional	Back alignment and domain information

>PHA03100 ankyrin repeat protein; Provisional	Back alignment and domain information

>PHA02859 ankyrin repeat protein; Provisional	Back alignment and domain information

>PHA02798 ankyrin-like protein; Provisional	Back alignment and domain information

>PHA02989 ankyrin repeat protein; Provisional	Back alignment and domain information

>PHA02741 hypothetical protein; Provisional	Back alignment and domain information

>PHA03095 ankyrin-like protein; Provisional	Back alignment and domain information

>PHA02716 CPXV016; CPX019; EVM010; Provisional	Back alignment and domain information

>PHA02946 ankyin-like protein; Provisional	Back alignment and domain information

>PHA02741 hypothetical protein; Provisional	Back alignment and domain information

>PHA03100 ankyrin repeat protein; Provisional	Back alignment and domain information

>PHA02736 Viral ankyrin protein; Provisional	Back alignment and domain information

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]	Back alignment and domain information

>PHA02795 ankyrin-like protein; Provisional	Back alignment and domain information

>PHA02884 ankyrin repeat protein; Provisional	Back alignment and domain information

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>TIGR00870 trp transient-receptor-potential calcium channel protein	Back alignment and domain information

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>PHA02736 Viral ankyrin protein; Provisional	Back alignment and domain information

>PHA02989 ankyrin repeat protein; Provisional	Back alignment and domain information

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>PHA02798 ankyrin-like protein; Provisional	Back alignment and domain information

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>PHA02743 Viral ankyrin protein; Provisional	Back alignment and domain information

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>PHA02795 ankyrin-like protein; Provisional	Back alignment and domain information

>PHA02917 ankyrin-like protein; Provisional	Back alignment and domain information

>TIGR00870 trp transient-receptor-potential calcium channel protein	Back alignment and domain information

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A	Back alignment and domain information

>PHA02730 ankyrin-like protein; Provisional	Back alignment and domain information

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]	Back alignment and domain information

>PHA02884 ankyrin repeat protein; Provisional	Back alignment and domain information

>PHA02730 ankyrin-like protein; Provisional	Back alignment and domain information

>PHA02792 ankyrin-like protein; Provisional	Back alignment and domain information

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain	Back alignment and domain information

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]	Back alignment and domain information

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>PHA02917 ankyrin-like protein; Provisional	Back alignment and domain information

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PLN03192 Voltage-dependent potassium channel; Provisional	Back alignment and domain information

>PHA02792 ankyrin-like protein; Provisional	Back alignment and domain information

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins	Back alignment and domain information

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins	Back alignment and domain information

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain	Back alignment and domain information

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]	Back alignment and domain information

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]	Back alignment and domain information

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]	Back alignment and domain information

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]	Back alignment and domain information

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A	Back alignment and domain information

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional	Back alignment and domain information

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A	Back alignment and domain information

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional	Back alignment and domain information

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A	Back alignment and domain information

>KOG4214 consensus Myotrophin and similar proteins [Transcription]	Back alignment and domain information

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]	Back alignment and domain information

>PF13606 Ank_3: Ankyrin repeat	Back alignment and domain information

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]	Back alignment and domain information

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature	Back alignment and domain information

>KOG4214 consensus Myotrophin and similar proteins [Transcription]	Back alignment and domain information

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]	Back alignment and domain information

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]	Back alignment and domain information

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]	Back alignment and domain information

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]	Back alignment and domain information

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]	Back alignment and domain information

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]	Back alignment and domain information

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]	Back alignment and domain information

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature	Back alignment and domain information

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>smart00248 ANK ankyrin repeats	Back alignment and domain information

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]	Back alignment and domain information

>PF13606 Ank_3: Ankyrin repeat	Back alignment and domain information

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]	Back alignment and domain information

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]	Back alignment and domain information

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		363
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 39/243 (16%), Positives = 76/243 (31%), Gaps = 77/243 (31%)

Query: 1   MSSIGIEDTDAKLKINSELY----------NALMIKKD---EQKVSELCRKVPDHALYVF 47
           MS I  E     +   + +Y          N +  K +    Q   +L R+    AL   
Sbjct: 95  MSPIKTEQRQPSM--MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-RQ----ALLEL 147

Query: 48  TIHDDTVLL-MATYTKKSDLVIK-LLDELPDQSLD------KMTRQNKAGNTIQHETATR 99
               + ++  +   + K+ + +   L       +D       +   N     ++     +
Sbjct: 148 RPAKNVLIDGVLG-SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM---LQ 203

Query: 100 RLVRKIDYNGNTIL-HMAGIK-----IKDYGSEKMEGP----ALL-LRDELLWYERV--- 145
           +L+ +ID N  +   H + IK     I+      ++       LL L +  +   +    
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWNA 261

Query: 146 -------------KSVT-------MAHF-LNHGNNMGFTPEE---LFA----TANNELRA 177
                        K VT         H  L+H ++M  TP+E   L          +L  
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDH-HSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 178 QSK 180
           +  
Sbjct: 321 EVL 323

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		363
4gpm_A		169	Engineered protein OR264; de novo protein, structu	99.85
3twr_A		165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.8
3v31_A		167	Ankyrin repeat family A protein 2; structural geno	99.8
4gpm_A		169	Engineered protein OR264; de novo protein, structu	99.79
2rfm_A		192	Putative ankyrin repeat protein TV1425; ANK repeat	99.79
3v30_A		172	DNA-binding protein rfxank; structural genomics co	99.79
4b93_B		269	Ankyrin repeat domain-containing protein 27; endoc	99.78
1awc_B		153	Protein (GA binding protein beta 1); complex (tran	99.78
1bd8_A		156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.77
2y1l_E		169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.77
3f6q_A		179	Integrin-linked protein kinase; ILK, integrin-link	99.77
1yyh_A		253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.77
2rfa_A		232	Transient receptor potential cation channel subfa	99.76
3b7b_A		237	Euchromatic histone-lysine N-methyltransferase 1;	99.76
2f8y_A		223	Notch homolog 1, translocation-associated (drosoph	99.76
3aji_A		231	26S proteasome non-ATPase regulatory subunit 10; g	99.76
1ihb_A		162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.76
1oy3_D		282	Transcription factor inhibitor I-kappa-B-beta; pro	99.75
3hra_A		201	Ankyrin repeat family protein; structural protein;	99.75
2dzn_A		228	Probable 26S proteasome regulatory subunit P28; an	99.75
2rfa_A		232	Transient receptor potential cation channel subfa	99.75
1s70_B		299	130 kDa myosin-binding subunit of smooth muscle my	99.74
1sw6_A		327	Regulatory protein SWI6; transcription regulation,	99.74
2f8y_A		223	Notch homolog 1, translocation-associated (drosoph	99.74
1yyh_A		253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.74
3v30_A		172	DNA-binding protein rfxank; structural genomics co	99.74
2xai_A		261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.74
1oy3_D		282	Transcription factor inhibitor I-kappa-B-beta; pro	99.73
3utm_A		351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.73
3t8k_A		186	Uncharacterized protein; structural genomics, PSI-	99.73
3hra_A		201	Ankyrin repeat family protein; structural protein;	99.72
2dzn_A		228	Probable 26S proteasome regulatory subunit P28; an	99.72
1bi7_B		156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.72
3aji_A		231	26S proteasome non-ATPase regulatory subunit 10; g	99.72
1k1a_A		241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.72
2jab_A		136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.72
1ikn_D		236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.71
1n11_A		437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.71
1d9s_A		136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.71
4hbd_A		276	KN motif and ankyrin repeat domain-containing Pro;	99.71
3d9h_A		285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.71
3b7b_A		237	Euchromatic histone-lysine N-methyltransferase 1;	99.7
1s70_B		299	130 kDa myosin-binding subunit of smooth muscle my	99.7
3c5r_A		137	BARD-1, BRCA1-associated ring domain protein 1; an	99.7
2etb_A		256	Transient receptor potential cation channel subfam	99.7
4b93_B		269	Ankyrin repeat domain-containing protein 27; endoc	99.7
3jxi_A		260	Vanilloid receptor-related osmotically activated p	99.7
1k1a_A		241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.69
3aaa_C		123	Myotrophin, protein V-1; actin capping protein, ba	99.69
3utm_A		351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.69
3deo_A		183	Signal recognition particle 43 kDa protein; chloro	99.68
1awc_B		153	Protein (GA binding protein beta 1); complex (tran	99.68
1n11_A		437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.68
3ljn_A		364	Hypothetical protein; ankyrin, structural genomics	99.68
3eu9_A		240	Huntingtin-interacting protein 14; epigenetics, an	99.68
2xai_A		261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.67
2y1l_E		169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.67
3ljn_A		364	Hypothetical protein; ankyrin, structural genomics	99.67
3kea_A		285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.67
1bd8_A		156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.67
3twr_A		165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.67
1ikn_D		236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.66
3v31_A		167	Ankyrin repeat family A protein 2; structural geno	99.66
2etb_A		256	Transient receptor potential cation channel subfam	99.66
2rfm_A		192	Putative ankyrin repeat protein TV1425; ANK repeat	99.66
3d9h_A		285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.66
2pnn_A		273	Transient receptor potential cation channel subfa	99.66
2fo1_E		373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.66
2pnn_A		273	Transient receptor potential cation channel subfa	99.66
1wdy_A		285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.65
1n0r_A		126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.65
3ui2_A		244	Signal recognition particle 43 kDa protein, chlor;	99.65
2vge_A		229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.65
3f6q_A		179	Integrin-linked protein kinase; ILK, integrin-link	99.64
1ihb_A		162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.64
1wdy_A		285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.64
3jxi_A		260	Vanilloid receptor-related osmotically activated p	99.63
3c5r_A		137	BARD-1, BRCA1-associated ring domain protein 1; an	99.63
1ycs_B		239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.63
1ycs_B		239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.63
3t8k_A		186	Uncharacterized protein; structural genomics, PSI-	99.62
3eu9_A		240	Huntingtin-interacting protein 14; epigenetics, an	99.62
1d9s_A		136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.62
2fo1_E		373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.61
4hbd_A		276	KN motif and ankyrin repeat domain-containing Pro;	99.61
3ehr_A		222	Osteoclast-stimulating factor 1; beta barrel, heli	99.61
2vge_A		229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.61
3aaa_C		123	Myotrophin, protein V-1; actin capping protein, ba	99.61
4g8k_A		337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.6
1sw6_A		327	Regulatory protein SWI6; transcription regulation,	99.59
4g8k_A		337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.59
2b0o_E		301	UPLC1; arfgap, structural genomics, structural gen	99.58
2jab_A		136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.58
1dcq_A		278	PYK2-associated protein beta; zinc-binding module,	99.57
3jue_A		368	Arfgap with coiled-coil, ANK repeat and PH domain	99.57
1n0r_A		126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.56
1n0q_A		93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.54
3kea_A		285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.54
3lvq_E		497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.53
3ehr_A		222	Osteoclast-stimulating factor 1; beta barrel, heli	99.53
2b0o_E		301	UPLC1; arfgap, structural genomics, structural gen	99.52
1bi7_B		156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.51
2l6b_A		115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.51
3ui2_A		244	Signal recognition particle 43 kDa protein, chlor;	99.51
3deo_A		183	Signal recognition particle 43 kDa protein; chloro	99.48
1n0q_A		93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.45
2l6b_A		115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.44
2zgd_A		110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.42
2zgd_A		110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.37
2aja_A		376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.29
3lvq_E		497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.27
3jue_A		368	Arfgap with coiled-coil, ANK repeat and PH domain	99.2
1dcq_A		278	PYK2-associated protein beta; zinc-binding module,	99.19
2aja_A		376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.16

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A	Back alignment and structure

Probab=99.85  E-value=7e-21  Score=166.09  Aligned_cols=135  Identities=22%  Similarity=0.205  Sum_probs=111.0

Q ss_pred             cccHHHHHHHHccCChHHHHHHhhcCCCCcccccCcCCCcHHhHHHhcCcHHHHHHHHHhCCCCchhhhhccCCCCCcHH
Q 041634           14 KINSELYNALMIKKDEQKVSELCRKVPDHALYVFTIHDDTVLLMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTIQ   93 (363)
Q Consensus        14 ~ln~~Lh~A~~~~g~~~~v~~lL~~~~~~~~~~~d~~G~TpLh~Aa~~G~~eiV~~LL~~~p~~~~~~~~~~d~~G~t~L   93 (363)
                      +++++|+.|+.. |+.+.|..|+..  +.+++.+|.+|.||||.|+..|+.++++.|++.+++ +.    .+|.+|+|||
T Consensus         3 dlg~~L~~Aa~~-G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~----~~d~~g~TpL   74 (169)
T 4gpm_A            3 ELGKRLIEAAEN-GNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VN----AKDSDGRTPL   74 (169)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TT----CCCTTSCCHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hh----hhccCCCCHH
Confidence            456789999998 998877776654  678899999999999999999999999999999998 54    6899999999


Q ss_pred             HHHHh-------------chhhccccCCCCcHHHHHHhhCcccCccccCCchhhhHHHHHHHHHhhhhccccccccCCCC
Q 041634           94 HETAT-------------RRLVRKIDYNGNTILHMAGIKIKDYGSEKMEGPALLLRDELLWYERVKSVTMAHFLNHGNNM  160 (363)
Q Consensus        94 H~Aa~-------------~~lin~~D~~GnT~LHlAa~~~~~~~~~~~~~~al~l~~~l~~~~~V~~~~~~~~~~~~N~~  160 (363)
                      |+|+.             +..+|.+|.+|+||||+|++.|+.+++            +++....+       ..+.+|++
T Consensus        75 h~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v------------~~Ll~~ga-------d~~~~d~~  135 (169)
T 4gpm_A           75 HHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV------------KLLISKGA-------DVNTSDSD  135 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH------------HHHHHTTC-------CTTCCCTT
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHH------------HHHHHcCC-------CccccCCC
Confidence            99998             567899999999999999999976554            12211122       25788999


Q ss_pred             CCCHHHHHHHh-cHHH
Q 041634          161 GFTPEELFATA-NNEL  175 (363)
Q Consensus       161 G~Tp~dl~~~~-~~~l  175 (363)
                      |+||++++.+. +.++
T Consensus       136 G~TpL~~A~~~g~~~i  151 (169)
T 4gpm_A          136 GRTPLDLAREHGNEEV  151 (169)
T ss_dssp             SCCHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHcCCHHH
Confidence            99999998764 4443

PyMOL of 4gpm

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*	Back alignment and structure

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A	Back alignment and structure

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A	Back alignment and structure

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}	Back alignment and structure

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A	Back alignment and structure

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}	Back alignment and structure

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1	Back alignment and structure

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B	Back alignment and structure

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*	Back alignment and structure

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A	Back alignment and structure

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A	Back alignment and structure

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}	Back alignment and structure

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*	Back alignment and structure

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A	Back alignment and structure

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A	Back alignment and structure

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A	Back alignment and structure

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D	Back alignment and structure

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}	Back alignment and structure

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A	Back alignment and structure

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}	Back alignment and structure

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1	Back alignment and structure

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1	Back alignment and structure

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A	Back alignment and structure

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A	Back alignment and structure

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A	Back alignment and structure

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D	Back alignment and structure

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}	Back alignment and structure

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}	Back alignment and structure

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}	Back alignment and structure

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A	Back alignment and structure

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A	Back alignment and structure

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A	Back alignment and structure

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A	Back alignment and structure

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C	Back alignment and structure

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E	Back alignment and structure

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1	Back alignment and structure

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1	Back alignment and structure

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}	Back alignment and structure

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}	Back alignment and structure

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*	Back alignment and structure

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1	Back alignment and structure

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1	Back alignment and structure

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A	Back alignment and structure

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}	Back alignment and structure

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*	Back alignment and structure

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A	Back alignment and structure

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A	Back alignment and structure

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}	Back alignment and structure

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A	Back alignment and structure

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1	Back alignment and structure

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1	Back alignment and structure

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}	Back alignment and structure

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}	Back alignment and structure

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*	Back alignment and structure

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}	Back alignment and structure

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}	Back alignment and structure

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B	Back alignment and structure

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*	Back alignment and structure

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E	Back alignment and structure

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A	Back alignment and structure

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A	Back alignment and structure

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}	Back alignment and structure

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}	Back alignment and structure

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*	Back alignment and structure

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1	Back alignment and structure

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*	Back alignment and structure

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1	Back alignment and structure

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1	Back alignment and structure

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A	Back alignment and structure

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}	Back alignment and structure

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A	Back alignment and structure

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A	Back alignment and structure

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1	Back alignment and structure

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*	Back alignment and structure

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1	Back alignment and structure

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B	Back alignment and structure

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B	Back alignment and structure

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}	Back alignment and structure

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}	Back alignment and structure

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1	Back alignment and structure

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1	Back alignment and structure

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}	Back alignment and structure

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A	Back alignment and structure

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}	Back alignment and structure

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A	Back alignment and structure

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*	Back alignment and structure

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1	Back alignment and structure

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*	Back alignment and structure

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}	Back alignment and structure

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C	Back alignment and structure

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1	Back alignment and structure

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A	Back alignment and structure

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1	Back alignment and structure

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1	Back alignment and structure

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}	Back alignment and structure

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*	Back alignment and structure

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A	Back alignment and structure

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}	Back alignment and structure

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A	Back alignment and structure

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}	Back alignment and structure

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A	Back alignment and structure

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A	Back alignment and structure

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1	Back alignment and structure

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}	Back alignment and structure

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A	Back alignment and structure

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A	Back alignment and structure

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1	Back alignment and structure

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A	Back alignment and structure

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1	Back alignment and structure

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		363
d1oy3d_		255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.78
d1uoha_		223	26S proteasome non-ATPase regulatory subunit 10, g	99.78
d1ixva_		229	26S proteasome non-ATPase regulatory subunit 10, g	99.76
d2fo1e1		277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.76
d1sw6a_		301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.75
d1s70b_		291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.72
d1bd8a_		156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.71
d1k1aa_		228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1myoa_		118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.7
d1iknd_		221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.7
d1awcb_		153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.68
d1ihba_		156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.64
d1uoha_		223	26S proteasome non-ATPase regulatory subunit 10, g	99.64
d1bi7b_		125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.64
d1myoa_		118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.64
d1dcqa1		154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.61
d1ot8a_		209	Neurogenic locus notch receptor domain {Fruit fly	99.59
d1ycsb1		130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1n11a_		408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1n11a_		408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1bd8a_		156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.57
d1oy3d_		255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.56
d1wdya_		285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.52
d1ycsb1		130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1sw6a_		301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.48
d1bi7b_		125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.44
d1ihba_		156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.44
d2ajaa1		346	Hypothetical protein LPG2416 {Legionella pneumophi	99.44
d2fo1e1		277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.42
d1iknd_		221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.41
d1awcb_		153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.41
d1ixva_		229	26S proteasome non-ATPase regulatory subunit 10, g	99.4
d2ajaa1		346	Hypothetical protein LPG2416 {Legionella pneumophi	99.39
d1dcqa1		154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.34
d1wdya_		285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.33
d1ot8a_		209	Neurogenic locus notch receptor domain {Fruit fly	99.31
d1k1aa_		228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1s70b_		291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.16

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=3.4e-19  Score=160.39  Aligned_cols=157  Identities=20%  Similarity=0.079  Sum_probs=110.9

Q ss_pred             ccccHHHHHHHHccCChHHHHHHhhcC-CCCcccccCcCCCcHHhHHHhcCcHHHHHHHHHhCCCCchhhhhccCCCCCc
Q 041634           13 LKINSELYNALMIKKDEQKVSELCRKV-PDHALYVFTIHDDTVLLMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNT   91 (363)
Q Consensus        13 ~~ln~~Lh~A~~~~g~~~~v~~lL~~~-~~~~~~~~d~~G~TpLh~Aa~~G~~eiV~~LL~~~p~~~~~~~~~~d~~G~t   91 (363)
                      ++++++||+|+.. |+.+.+..++... ....++.+|.+|.||||+|+..|+.++++.|++.+++ +.    .+|++|+|
T Consensus         7 ~~G~t~Lh~A~~~-~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-i~----~~d~~g~t   80 (255)
T d1oy3d_           7 EDGDTALHLAVIH-QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VL----VAERGGHT   80 (255)
T ss_dssp             TTCCCHHHHHHHT-TCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SS----CCCTTSCC
T ss_pred             cCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccc-cc----ccccccch
Confidence            4578999999998 8877555444432 2234678899999999999999999999999999988 44    68999999


Q ss_pred             HHHHHHh------------------------------------------------------------chhhccccCCCCc
Q 041634           92 IQHETAT------------------------------------------------------------RRLVRKIDYNGNT  111 (363)
Q Consensus        92 ~LH~Aa~------------------------------------------------------------~~lin~~D~~GnT  111 (363)
                      |||+|+.                                                            +..++.+|.+|.|
T Consensus        81 pL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~T  160 (255)
T d1oy3d_          81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (255)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             hhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcc
Confidence            9999996                                                            3456789999999


Q ss_pred             HHHHHHhhCcccCcccc--------------CCchhhhHHHHHHHHHhhhhccc-cccccCCCCCCCHHHHHHH-hcHHH
Q 041634          112 ILHMAGIKIKDYGSEKM--------------EGPALLLRDELLWYERVKSVTMA-HFLNHGNNMGFTPEELFAT-ANNEL  175 (363)
Q Consensus       112 ~LHlAa~~~~~~~~~~~--------------~~~al~l~~~l~~~~~V~~~~~~-~~~~~~N~~G~Tp~dl~~~-~~~~l  175 (363)
                      |||+|++.++.++++.+              +.+++...-.....+.++-.+.. ..++.+|++|+||++++.. .+.++
T Consensus       161 pLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i  240 (255)
T d1oy3d_         161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL  240 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred             cccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence            99999999877654211              22344332222222223222111 1457788888888888654 34443

PyMOL of d1oy3d_

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	Back information, alignment and structure

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}	Back information, alignment and structure

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	Back information, alignment and structure

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}	Back information, alignment and structure

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure