Citrus Sinensis ID: 041640

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MVTIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCLPSKSLLWGLIVALDMVLDVTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSACLSFSTTLA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVTIERICTFSLRVIAILTTFSATIVMITSHERVRLNevsyeakysdmptfKFFVIANAIVCIYGLLVLCLPSKSLLWGLIVALDMVLDVTSSISAALAIGqvekngncfhpgcynqpagniprTEQLLSACLSFSTTLA
Flexible Loop (DISEMBL)
mvtiericTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCLPSKSLLWGLIVALDMVLDVTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSACLSFSTTLA
Low Complexity Region (SEG)
MVTIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGllvlclpsksllWGLIVALDMVLDVTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSACLSFSTTLA
Disordered region (IsUnstruct)
**TIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCLPSKSLLWGLIVALDMVLDVTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSACLS******
Disordered Region (DISOPRED)
****ERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCLPSKSLLWGLIVALDMVLDVTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSACLSFSTT**
Disordered Region (DISEMBL)
MVTIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCLPSKSLLWGLIVALDMVLDVTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSACLSFSTTLA
Disordered Region (DISPRO)
MVTIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCLPSKSLLWGLIVALDMVLDVTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSACLSFSTTLA
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVTIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCLPSKSLLWGLIVALDMVLDVTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSACLSFSTTLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
B9RW00	163	CASP-like protein RCOM_11	N/A	no	0.871	0.748	0.523	2e-26
B9N2D0	162	CASP-like protein POPTRDR	yes	no	0.785	0.679	0.516	3e-24
B9N5U6	171	CASP-like protein POPTRDR	yes	no	0.785	0.643	0.508	3e-24
A7PJ32	161	CASP-like protein VIT_12s	yes	no	0.914	0.795	0.478	5e-24
D7M2M8	164	CASP-like protein ARALYDR	N/A	no	0.678	0.579	0.533	2e-22
Q9ZT81	164	CASP-like protein At4g035	yes	no	0.678	0.579	0.523	3e-22
D7KCH2	164	CASP-like protein ARALYDR	N/A	no	0.821	0.701	0.464	1e-21
Q9LR57	164	CASP-like protein At1g037	no	no	0.821	0.701	0.464	1e-21
B9H2V1	163	CASP-like protein POPTRDR	yes	no	0.885	0.760	0.447	5e-20
B9RZ92	164	CASP-like protein RCOM_09	N/A	no	0.864	0.737	0.456	3e-19

>sp|B9RW00|CSPL6_RICCO CASP-like protein RCOM_1174750 OS=Ricinus communis GN=RCOM_1174750 PE=2 SV=1

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/126 (52%), Positives = 80/126 (63%), Gaps = 4/126 (3%)

Query: 1   MVTIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAI 60
           M   +R+ T  LR+IA  T   A IVM TSHE      VSYEAKYSD P FK+FVI NAI
Sbjct: 1   MAKAKRVFTLLLRLIAFGTALVAAIVMATSHESGSFFTVSYEAKYSDTPAFKYFVIVNAI 60

Query: 61  VCIYGLLVLCLPSKSLLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNCFHPGCYNQP 118
           V +Y  L L LPS+SLLW L++  D+V    VTSSISAA+A+ QV K GN  H G +   
Sbjct: 61  VTVYSFLALFLPSESLLWRLVIVTDVVFTMLVTSSISAAVAVAQVGKKGNS-HAG-WLPI 118

Query: 119 AGNIPR 124
            G +P+
Sbjct: 119 CGQVPK 124

Ricinus communis (taxid: 3988)

>sp|B9N2D0|CSPLK_POPTR CASP-like protein POPTRDRAFT_670582 OS=Populus trichocarpa GN=POPTRDRAFT_670582 PE=2 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 76/120 (63%), Gaps = 10/120 (8%)

Query: 15  IAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCLPSK 74
           IA+  T +A I+M TSHE+     VSYEAKY+D P FK+FVIANAIV +YG LVL  P  
Sbjct: 15  IAVGATLAAVIIMATSHEKGTFFAVSYEAKYTDTPAFKYFVIANAIVTVYGFLVLFHPPG 74

Query: 75  SLLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSAC 132
           S LW L++ALD+V    + SSISAALA+ QV KNG        N  AG +P   Q+   C
Sbjct: 75  SPLWRLVLALDLVFTMLLISSISAALAVAQVGKNG--------NSRAGWLPVCGQVTKYC 126

Populus trichocarpa (taxid: 3694)

>sp|B9N5U6|CSPL4_POPTR CASP-like protein POPTRDRAFT_270504 OS=Populus trichocarpa GN=POPTRDRAFT_270504 PE=3 SV=2

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 76/120 (63%), Gaps = 10/120 (8%)

Query: 15  IAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCLPSK 74
           IA   T +A I+M TSHE+     +SYEAKYSD P FK+FVIANAIV +YG L L +PS+
Sbjct: 15  IAFGATLAAVIIMATSHEKGSFFALSYEAKYSDTPAFKYFVIANAIVTVYGFLALFIPSE 74

Query: 75  SLLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSAC 132
           S LW L++ALD+V    + SSISAALA+ QV K G        N  AG +P   Q+   C
Sbjct: 75  SPLWRLVLALDLVFTMLLISSISAALAVAQVGKKG--------NSSAGWLPVCGQVTKYC 126

Populus trichocarpa (taxid: 3694)

>sp|A7PJ32|CSPL2_VITVI CASP-like protein VIT_12s0028g03760 OS=Vitis vinifera GN=VIT_12s0028g03760 PE=2 SV=1

 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 84/138 (60%), Gaps = 10/138 (7%)

Query: 5   ERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIY 64
           +RIC   LR++A   T SA IVM TSHER     +S EAKYS  P FK+FVIANAI   Y
Sbjct: 6   DRICFLVLRLLAFGATLSAAIVMATSHERTTYLSLSIEAKYSHTPAFKYFVIANAIGSAY 65

Query: 65  GLLVLCLPSKSLLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNCFHPGCYNQPAGNI 122
            LL+L LPS   LW L++A D+V+   +TSSISAAL+I  V K GN +        AG +
Sbjct: 66  SLLLLFLPSHGSLWPLVIASDVVITMFLTSSISAALSIAYVGKKGNSY--------AGWL 117

Query: 123 PRTEQLLSACLSFSTTLA 140
           P  +Q+ + C   +  LA
Sbjct: 118 PICDQVPNYCNHVTGALA 135

Vitis vinifera (taxid: 29760)

>sp|D7M2M8|CSPLF_ARALL CASP-like protein ARALYDRAFT_327471 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_327471 PE=3 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 70/105 (66%), Gaps = 10/105 (9%)

Query: 25  IVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCLPSKSLLWGLIVAL 84
           IVMITS ER     VS EAKY+DM  FK+FVIANA+V +Y  LVL LP +SLLW  +V L
Sbjct: 26  IVMITSRERASFFAVSLEAKYTDMAAFKYFVIANAVVSVYSFLVLFLPKESLLWKFVVVL 85

Query: 85  DMVLD--VTSSISAALAIGQVEKNGNC---FHPGCYNQPAGNIPR 124
           D+V+   +TSS+SAALA+ QV K GN    + P C     G +P+
Sbjct: 86  DLVMTMLLTSSLSAALAVAQVGKKGNANAGWLPIC-----GQVPK 125

Arabidopsis lyrata subsp. lyrata (taxid: 81972)

>sp|Q9ZT81|CSPLK_ARATH CASP-like protein At4g03540 OS=Arabidopsis thaliana GN=At4g03540 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 70/105 (66%), Gaps = 10/105 (9%)

Query: 25  IVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCLPSKSLLWGLIVAL 84
           IVMITS ER     +S EAKY+DM  FK+FVIANA+V +Y  LVL LP +SLLW  +V L
Sbjct: 26  IVMITSRERASFLAISLEAKYTDMAAFKYFVIANAVVSVYSFLVLFLPKESLLWKFVVVL 85

Query: 85  DMVLD--VTSSISAALAIGQVEKNGNC---FHPGCYNQPAGNIPR 124
           D+V+   +TSS+SAALA+ QV K GN    + P C     G +P+
Sbjct: 86  DLVMTMLLTSSLSAALAVAQVGKKGNANAGWLPIC-----GQVPK 125

Arabidopsis thaliana (taxid: 3702)

>sp|D7KCH2|CSPLE_ARALL CASP-like protein ARALYDRAFT_470341 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_470341 PE=3 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 75/125 (60%), Gaps = 10/125 (8%)

Query: 5   ERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIY 64
           +R+    LR  A      A I MITS ER     +S  AKYSD+  FK+FVIANAIV +Y
Sbjct: 6   QRLGGLVLRFAAFCAALGAVIAMITSRERSSFFVISLVAKYSDLAAFKYFVIANAIVTVY 65

Query: 65  GLLVLCLPSKSLLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNC---FHPGCYNQPA 119
             LVL LP +SLLW  +V LD+++   +TSS+SAA+A+ QV K GN    + P C     
Sbjct: 66  SFLVLFLPKESLLWKFVVVLDLMVTMLLTSSLSAAVAVAQVGKRGNANAGWLPIC----- 120

Query: 120 GNIPR 124
           G +PR
Sbjct: 121 GQVPR 125

Arabidopsis lyrata subsp. lyrata (taxid: 81972)

>sp|Q9LR57|CSPL1_ARATH CASP-like protein At1g03700 OS=Arabidopsis thaliana GN=At1g03700 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 75/125 (60%), Gaps = 10/125 (8%)

Query: 5   ERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIY 64
           +R+    LR  A      A I MITS ER     +S  AKYSD+  FK+FVIANAIV +Y
Sbjct: 6   QRLGGLVLRFAAFCAALGAVIAMITSRERSSFFVISLVAKYSDLAAFKYFVIANAIVTVY 65

Query: 65  GLLVLCLPSKSLLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNC---FHPGCYNQPA 119
             LVL LP +SLLW  +V LD+++   +TSS+SAA+A+ QV K GN    + P C     
Sbjct: 66  SFLVLFLPKESLLWKFVVVLDLMVTMLLTSSLSAAVAVAQVGKRGNANAGWLPIC----- 120

Query: 120 GNIPR 124
           G +PR
Sbjct: 121 GQVPR 125

Arabidopsis thaliana (taxid: 3702)

>sp|B9H2V1|CSPL6_POPTR CASP-like protein POPTRDRAFT_758901 OS=Populus trichocarpa GN=POPTRDRAFT_758901 PE=3 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/134 (44%), Positives = 81/134 (60%), Gaps = 10/134 (7%)

Query: 1   MVTIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAI 60
           M  I++I T  LR++A+  T  A + M+TSH+  ++  +++  KYS+ P FK+FVIA AI
Sbjct: 1   MAKIKKIFTNFLRLLALAATVVAIVFMVTSHDSAQVLNLTFTVKYSNTPVFKYFVIAEAI 60

Query: 61  VCIYGLLVLCLPSKSLLWGLIVALDMVLDV--TSSISAALAIGQVEKNGNCFHPGCYNQP 118
              Y ++ + L  KSL W L+V LDMV  V  TSSISAALAI QV K GN  H       
Sbjct: 61  AGGYIVISILLSFKSLFWRLLVILDMVTAVLLTSSISAALAIAQVGKKGNT-H------- 112

Query: 119 AGNIPRTEQLLSAC 132
           AG +P  EQ+   C
Sbjct: 113 AGWLPVCEQVPDFC 126

Populus trichocarpa (taxid: 3694)

>sp|B9RZ92|CSPL2_RICCO CASP-like protein RCOM_0936380 OS=Ricinus communis GN=RCOM_0936380 PE=3 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 79/125 (63%), Gaps = 4/125 (3%)

Query: 2   VTIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIV 61
           V ++++ +  LR +A+  T  A IVMI SH+   +  +++ AKY++ P FK+FVIA  I 
Sbjct: 3   VELKKVFSTILRFLALAATVVAVIVMIRSHDSAIVLNLTFSAKYNNTPAFKYFVIAEGIA 62

Query: 62  CIYGLLVLCLPSKSLLWGLIVALDMVLDV--TSSISAALAIGQVEKNGNCFHPGCYNQPA 119
            +Y ++V+ L SK LL  LIV LDMV  V  TSSISAALAI QV K GN  H G +    
Sbjct: 63  SVYTIIVIFLWSKGLLGRLIVILDMVTTVLLTSSISAALAIAQVGKKGNS-HAG-WLPVC 120

Query: 120 GNIPR 124
           G +P+
Sbjct: 121 GQVPK 125

Ricinus communis (taxid: 3988)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
255553757	163	conserved hypothetical protein [Ricinus	0.871	0.748	0.523	1e-24
449438494	164	PREDICTED: CASP-like protein RCOM_117475	0.885	0.756	0.455	6e-23
449479160	164	PREDICTED: CASP-like protein RCOM_117475	0.885	0.756	0.447	1e-22
224121696	159	predicted protein [Populus trichocarpa]	0.785	0.691	0.508	2e-22
224127057	162	predicted protein [Populus trichocarpa]	0.785	0.679	0.516	2e-22
341958683	171	RecName: Full=CASP-like protein POPTRDRA	0.785	0.643	0.508	3e-22
226713181	161	RecName: Full=CASP-like protein VIT_12s0	0.914	0.795	0.478	4e-22
225446353	162	PREDICTED: CASP-like protein VIT_12s0028	0.914	0.790	0.478	4e-22
356517606	163	PREDICTED: CASP-like protein RCOM_117475	0.821	0.705	0.456	1e-21
356542938	163	PREDICTED: CASP-like protein RCOM_117475	0.842	0.723	0.495	2e-21

>gi|255553757|ref|XP_002517919.1| conserved hypothetical protein [Ricinus communis] gi|288559178|sp|B9RW00.1|CSPL6_RICCO RecName: Full=CASP-like protein RCOM_1174750 gi|223542901|gb|EEF44437.1| conserved hypothetical protein [Ricinus communis]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/126 (52%), Positives = 80/126 (63%), Gaps = 4/126 (3%)

Query: 1   MVTIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAI 60
           M   +R+ T  LR+IA  T   A IVM TSHE      VSYEAKYSD P FK+FVI NAI
Sbjct: 1   MAKAKRVFTLLLRLIAFGTALVAAIVMATSHESGSFFTVSYEAKYSDTPAFKYFVIVNAI 60

Query: 61  VCIYGLLVLCLPSKSLLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNCFHPGCYNQP 118
           V +Y  L L LPS+SLLW L++  D+V    VTSSISAA+A+ QV K GN  H G +   
Sbjct: 61  VTVYSFLALFLPSESLLWRLVIVTDVVFTMLVTSSISAAVAVAQVGKKGNS-HAG-WLPI 118

Query: 119 AGNIPR 124
            G +P+
Sbjct: 119 CGQVPK 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438494|ref|XP_004137023.1| PREDICTED: CASP-like protein RCOM_1174750-like [Cucumis sativus]

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/134 (45%), Positives = 91/134 (67%), Gaps = 10/134 (7%)

Query: 1   MVTIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAI 60
           M   +RIC   LR++A+ +T SA IVM TSHE  R   +S+EAKY+  P+FK+FVIAN++
Sbjct: 2   MGKTKRICLLLLRLLALGSTVSAAIVMATSHEEARFFTLSFEAKYTHTPSFKYFVIANSV 61

Query: 61  VCIYGLLVLCLPSKSLLWGLIVALDMVLDV--TSSISAALAIGQVEKNGNCFHPGCYNQP 118
             +YG LVL LP++SLLW L++  D+++ +  TSSI+AALA+ Q+ K+GN +        
Sbjct: 62  ASVYGFLVLFLPAESLLWRLVLCFDVIMTMLLTSSIAAALAVAQIGKDGNSY-------- 113

Query: 119 AGNIPRTEQLLSAC 132
           AG +P  +Q+ + C
Sbjct: 114 AGWLPICDQVANYC 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479160|ref|XP_004155522.1| PREDICTED: CASP-like protein RCOM_1174750-like [Cucumis sativus]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/134 (44%), Positives = 91/134 (67%), Gaps = 10/134 (7%)

Query: 1   MVTIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAI 60
           M   +RIC   LR++A+ +T SA IVM TSHE  R   +S+EAKY+  P+FK+FVIAN++
Sbjct: 2   MGKTKRICLLLLRLLALGSTVSAAIVMATSHEEARFFTLSFEAKYTHTPSFKYFVIANSV 61

Query: 61  VCIYGLLVLCLPSKSLLWGLIVALDMVLDV--TSSISAALAIGQVEKNGNCFHPGCYNQP 118
             +YG LVL LP++SLLW L++  D+++ +  TSS++AALA+ Q+ K+GN +        
Sbjct: 62  ASVYGFLVLFLPAESLLWRLVLCFDVIMTMLLTSSMAAALAVAQIGKDGNSY-------- 113

Query: 119 AGNIPRTEQLLSAC 132
           AG +P  +Q+ + C
Sbjct: 114 AGWLPICDQVANYC 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121696|ref|XP_002330630.1| predicted protein [Populus trichocarpa] gi|222872234|gb|EEF09365.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 76/120 (63%), Gaps = 10/120 (8%)

Query: 15  IAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCLPSK 74
           IA   T +A I+M TSHE+     +SYEAKYSD P FK+FVIANAIV +YG L L +PS+
Sbjct: 15  IAFGATLAAVIIMATSHEKGSFFALSYEAKYSDTPAFKYFVIANAIVTVYGFLALFIPSE 74

Query: 75  SLLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSAC 132
           S LW L++ALD+V    + SSISAALA+ QV K G        N  AG +P   Q+   C
Sbjct: 75  SPLWRLVLALDLVFTMLLISSISAALAVAQVGKKG--------NSSAGWLPVCGQVTKYC 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127057|ref|XP_002329375.1| predicted protein [Populus trichocarpa] gi|288559183|sp|B9N2D0.1|CSPLK_POPTR RecName: Full=CASP-like protein POPTRDRAFT_670582 gi|222870425|gb|EEF07556.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 76/120 (63%), Gaps = 10/120 (8%)

Query: 15  IAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCLPSK 74
           IA+  T +A I+M TSHE+     VSYEAKY+D P FK+FVIANAIV +YG LVL  P  
Sbjct: 15  IAVGATLAAVIIMATSHEKGTFFAVSYEAKYTDTPAFKYFVIANAIVTVYGFLVLFHPPG 74

Query: 75  SLLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSAC 132
           S LW L++ALD+V    + SSISAALA+ QV KNG        N  AG +P   Q+   C
Sbjct: 75  SPLWRLVLALDLVFTMLLISSISAALAVAQVGKNG--------NSRAGWLPVCGQVTKYC 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341958683|sp|B9N5U6.2|CSPL4_POPTR RecName: Full=CASP-like protein POPTRDRAFT_270504

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 76/120 (63%), Gaps = 10/120 (8%)

Query: 15  IAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCLPSK 74
           IA   T +A I+M TSHE+     +SYEAKYSD P FK+FVIANAIV +YG L L +PS+
Sbjct: 15  IAFGATLAAVIIMATSHEKGSFFALSYEAKYSDTPAFKYFVIANAIVTVYGFLALFIPSE 74

Query: 75  SLLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSAC 132
           S LW L++ALD+V    + SSISAALA+ QV K G        N  AG +P   Q+   C
Sbjct: 75  SPLWRLVLALDLVFTMLLISSISAALAVAQVGKKG--------NSSAGWLPVCGQVTKYC 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226713181|sp|A7PJ32.1|CSPL2_VITVI RecName: Full=CASP-like protein VIT_12s0028g03760 gi|302143288|emb|CBI21849.3| unnamed protein product [Vitis vinifera]

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 84/138 (60%), Gaps = 10/138 (7%)

Query: 5   ERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIY 64
           +RIC   LR++A   T SA IVM TSHER     +S EAKYS  P FK+FVIANAI   Y
Sbjct: 6   DRICFLVLRLLAFGATLSAAIVMATSHERTTYLSLSIEAKYSHTPAFKYFVIANAIGSAY 65

Query: 65  GLLVLCLPSKSLLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNCFHPGCYNQPAGNI 122
            LL+L LPS   LW L++A D+V+   +TSSISAAL+I  V K GN +        AG +
Sbjct: 66  SLLLLFLPSHGSLWPLVIASDVVITMFLTSSISAALSIAYVGKKGNSY--------AGWL 117

Query: 123 PRTEQLLSACLSFSTTLA 140
           P  +Q+ + C   +  LA
Sbjct: 118 PICDQVPNYCNHVTGALA 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446353|ref|XP_002272783.1| PREDICTED: CASP-like protein VIT_12s0028g03760-like [Vitis vinifera]

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 84/138 (60%), Gaps = 10/138 (7%)

Query: 5   ERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIY 64
           +RIC   LR++A   T SA IVM TSHER     +S EAKYS  P FK+FVIANAI   Y
Sbjct: 7   DRICFLVLRLLAFGATLSAAIVMATSHERTTYLSLSIEAKYSHTPAFKYFVIANAIGSAY 66

Query: 65  GLLVLCLPSKSLLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNCFHPGCYNQPAGNI 122
            LL+L LPS   LW L++A D+V+   +TSSISAAL+I  V K GN +        AG +
Sbjct: 67  SLLLLFLPSHGSLWPLVIASDVVITMFLTSSISAALSIAYVGKKGNSY--------AGWL 118

Query: 123 PRTEQLLSACLSFSTTLA 140
           P  +Q+ + C   +  LA
Sbjct: 119 PICDQVPNYCNHVTGALA 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517606|ref|XP_003527478.1| PREDICTED: CASP-like protein RCOM_1174750-like [Glycine max]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 80/125 (64%), Gaps = 10/125 (8%)

Query: 5   ERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIY 64
            + C   LR +  L T +A I+M TSHE   +  V++EAKY++ P FK+FV A +++ +Y
Sbjct: 5   RKACHLLLRFLVFLATLAAVILMATSHETATIFTVTFEAKYTNSPAFKYFVTAYSVITVY 64

Query: 65  GLLVLCLPSKSLLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNC---FHPGCYNQPA 119
           G LVL LP+KSLLW L+VALD++    V SS SA+LAI QV K GN    + P C     
Sbjct: 65  GFLVLFLPAKSLLWKLVVALDLLFTMLVVSSFSASLAIAQVGKKGNSDAGWLPIC----- 119

Query: 120 GNIPR 124
           G++P+
Sbjct: 120 GSVPK 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542938|ref|XP_003539921.1| PREDICTED: CASP-like protein RCOM_1174750-like [Glycine max]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 80/123 (65%), Gaps = 5/123 (4%)

Query: 1   MVTIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAI 60
           M    R+C   LR +A   T +A I+M TSHE   +  VS+EAKY++ P FK+FVIA ++
Sbjct: 1   MAKTRRVCHLLLRFLAFAATLAAVIMMATSHETATIFTVSFEAKYTNSPAFKYFVIAYSV 60

Query: 61  VCIYGLLVLCLPSKSLLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNC---FHPGCY 115
           + +YG LVL LP+KSLLW L+VALD+V    V SS SA+LAI QV K GN    + P C 
Sbjct: 61  ITVYGFLVLFLPAKSLLWQLVVALDLVFTMLVVSSFSASLAIAQVGKKGNSDAGWLPICD 120

Query: 116 NQP 118
           + P
Sbjct: 121 SVP 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2128776	164	AT4G03540 "AT4G03540" [Arabido	0.942	0.804	0.405	2.2e-18
TAIR|locus:2020773	164	AT1G03700 "AT1G03700" [Arabido	0.942	0.804	0.384	1.4e-16
UNIPROTKB|A2Y2B7	162	BLE3 "CASP-like protein BLE3"	0.8	0.691	0.321	1.5e-10
UNIPROTKB|Q84UT5	162	BLE3 "CASP-like protein BLE3"	0.8	0.691	0.321	1.5e-10
TAIR|locus:2150986	187	CASP5 "Casparian strip membran	0.728	0.545	0.309	8.7e-08
TAIR|locus:2160747	202	CASP4 "AT5G06200" [Arabidopsis	0.728	0.504	0.371	1.2e-07
TAIR|locus:2117308	170	AT4G25040 "AT4G25040" [Arabido	0.7	0.576	0.336	1.6e-06
TAIR|locus:2035791	209	AT1G14160 "AT1G14160" [Arabido	0.364	0.244	0.471	1.7e-06
TAIR|locus:2080742	204	CASP2 "AT3G11550" [Arabidopsis	0.728	0.5	0.345	3.5e-06
TAIR|locus:2053514	206	CASP1 "AT2G36100" [Arabidopsis	0.914	0.621	0.304	8e-06

TAIR|locus:2128776 AT4G03540 "AT4G03540" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 56/138 (40%), Positives = 79/138 (57%)

Query:     1 MVTI-ERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANA 59
             MV + +RI    LR+ A     +A IVMITS ER     +S EAKY+DM  FK+FVIANA
Sbjct:     1 MVKLTKRIGGLVLRLAAFGAALAALIVMITSRERASFLAISLEAKYTDMAAFKYFVIANA 60

Query:    60 IVCIYGXXXXXXXXXXXXWGLIVALDMVLDV--TSSISAALAIGQVEKNGNCFHPGCYNQ 117
             +V +Y             W  +V LD+V+ +  TSS+SAALA+ QV K GN  + G +  
Sbjct:    61 VVSVYSFLVLFLPKESLLWKFVVVLDLVMTMLLTSSLSAALAVAQVGKKGNA-NAG-WLP 118

Query:   118 PAGNIPR-TEQLLSACLS 134
               G +P+  +Q+  A ++
Sbjct:   119 ICGQVPKFCDQITGALIA 136

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020773 AT1G03700 "AT1G03700" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 53/138 (38%), Positives = 75/138 (54%)

Query:     1 MVTI-ERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANA 59
             MV + +R+    LR  A      A I MITS ER     +S  AKYSD+  FK+FVIANA
Sbjct:     1 MVKLTQRLGGLVLRFAAFCAALGAVIAMITSRERSSFFVISLVAKYSDLAAFKYFVIANA 60

Query:    60 IVCIYGXXXXXXXXXXXXWGLIVALDMVLDV--TSSISAALAIGQVEKNGNCFHPGCYNQ 117
             IV +Y             W  +V LD+++ +  TSS+SAA+A+ QV K GN  + G +  
Sbjct:    61 IVTVYSFLVLFLPKESLLWKFVVVLDLMVTMLLTSSLSAAVAVAQVGKRGNA-NAG-WLP 118

Query:   118 PAGNIPR-TEQLLSACLS 134
               G +PR  +Q+  A ++
Sbjct:   119 ICGQVPRFCDQITGALIA 136

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A2Y2B7 BLE3 "CASP-like protein BLE3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 37/115 (32%), Positives = 55/115 (47%)

Query:     1 MVTIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAI 60
             M  + R+    LR+ A     +A +VM+TS E      +  EAKYS  P+F FFV+A A+
Sbjct:     1 MAKVHRLMNAVLRLAAAAAAATAAVVMVTSRETTSFFGIQMEAKYSYTPSFIFFVVAYAV 60

Query:    61 VCIYGXXXXXXXXXXXXWGLIVALDMVLDVT--SSISAALAIGQVEKNGNCFHPG 113
                Y               L +  D+VL +    ++++A AI  + KNGN  H G
Sbjct:    61 AAAYSLLVLAVPAGSALSRLALTTDVVLGMVLAGAVASAGAISDIAKNGNS-HAG 114

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=ISS

UNIPROTKB|Q84UT5 BLE3 "CASP-like protein BLE3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 37/115 (32%), Positives = 55/115 (47%)

Query:     1 MVTIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAI 60
             M  + R+    LR+ A     +A +VM+TS E      +  EAKYS  P+F FFV+A A+
Sbjct:     1 MAKVHRLMNAVLRLAAAAAAATAAVVMVTSRETTSFFGIQMEAKYSYTPSFIFFVVAYAV 60

Query:    61 VCIYGXXXXXXXXXXXXWGLIVALDMVLDVT--SSISAALAIGQVEKNGNCFHPG 113
                Y               L +  D+VL +    ++++A AI  + KNGN  H G
Sbjct:    61 AAAYSLLVLAVPAGSALSRLALTTDVVLGMVLAGAVASAGAISDIAKNGNS-HAG 114

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0035264 "multicellular organism growth" evidence=IMP

TAIR|locus:2150986 CASP5 "Casparian strip membrane domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 35/113 (30%), Positives = 56/113 (49%)

Query:     7 ICTFSLRVIAILTTFSATIVMITSHERVRL--NEVSYEAKYSDMPTFKFFVIANAIVCIY 64
             I  F LR++A   T  + I+M T+HE +      + ++A+Y+D+P   FFV+ANA+V  Y
Sbjct:    27 ILEFILRIVAFFNTIGSAILMGTTHETLPFFTQFIRFQAEYNDLPALTFFVVANAVVSGY 86

Query:    65 -------GXXXXXXXXXXXXWGLIVALDMVLD--VTSSISAALAIGQVEKNGN 108
                                   L++ LD+ +   +TS  S+A AI  +  NGN
Sbjct:    87 LILSLTLAFVHIVKRKTQNTRILLIILDVAMLGLLTSGASSAAAIVYLAHNGN 139

GO:0005739 "mitochondrion" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0007043 "cell-cell junction assembly" evidence=IDA

GO:0042545 "cell wall modification" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0048226 "Casparian strip" evidence=IDA

TAIR|locus:2160747 CASP4 "AT5G06200" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 42/113 (37%), Positives = 55/113 (48%)

Query:     7 ICTFSLRVIAILTTFSATIVMITSHERVRL--NEVSYEAKYSDMPTFKFFVIANAIVCIY 64
             I  F LR+ AI+   +A   M TS E +      + +EA Y D+PTF+FFV+A AIV  Y
Sbjct:    43 IFDFLLRLAAIVAALAAAATMGTSDETLPFFTQFLQFEASYDDLPTFQFFVVAIAIVAGY 102

Query:    65 GXXXXXXXXXXXXWGLIVA---LDMVLDV------TSSISAALAIGQVEKNGN 108
                            L VA   L +VLD       T++ SAA AI  +  NGN
Sbjct:   103 LVLSLPFSVVTIVRPLAVAPRLLLLVLDTAALALDTAAASAAAAIVYLAHNGN 155

GO:0005515 "protein binding" evidence=IPI

GO:0007043 "cell-cell junction assembly" evidence=IDA

GO:0042545 "cell wall modification" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0048226 "Casparian strip" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2117308 AT4G25040 "AT4G25040" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 35/104 (33%), Positives = 51/104 (49%)

Query:    11 SLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGXXXXX 70
             S+RV+ I    ++  VMIT+ E   +  +++EAKYS    F++ V A   VC        
Sbjct:    20 SMRVLTIGAAMASMWVMITNREVASVYGIAFEAKYSYSSAFRYLVYAQIAVCAATLFTLV 79

Query:    71 XX-XXXXXWGLIVAL---DMVLDVT--SSISAALAIGQVEKNGN 108
                      GL+ AL   D++  +T  S+ SAA A G V K GN
Sbjct:    80 WACLAVRRRGLVFALFFFDLLTTLTAISAFSAAFAEGYVGKYGN 123

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035791 AT1G14160 "AT1G14160" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 25/53 (47%), Positives = 35/53 (66%)

Query:    10 FSLRVIAILTTFSATIVMITSHERV-RLNE-VSYEAKYSDMPTFKFFVIANAI 60
             F LR+ A+  T  + + M T+HE V  L++ V  + KYSD+PT  FFV+ANAI
Sbjct:    53 FVLRLFAVFGTIGSALAMGTTHESVVSLSQLVLLKVKYSDLPTLMFFVVANAI 105

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080742 CASP2 "AT3G11550" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 39/113 (34%), Positives = 54/113 (47%)

Query:     7 ICTFSLRVIAILTTFSATIVMITSHERVRL--NEVSYEAKYSDMPTFKFFVIANAIVCIY 64
             I  F LR+ AI+   +A   M TS E +      + +EA Y D+PTF+FFVIA A+V  Y
Sbjct:    45 IFDFLLRLAAIVAALAAAATMGTSDETLPFFTQFLQFEASYDDLPTFQFFVIAMALVGGY 104

Query:    65 GXXXXXXXXXXXXWGLIVA---LDMVLDV------TSSISAALAIGQVEKNGN 108
                            L  A   L +VLD       T++ S+A AI  +  +GN
Sbjct:   105 LVLSLPISVVTILRPLATAPRLLLLVLDTGVLALNTAAASSAAAISYLAHSGN 157

GO:0005515 "protein binding" evidence=IPI

GO:0007043 "cell-cell junction assembly" evidence=IDA

GO:0042545 "cell wall modification" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0048226 "Casparian strip" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2053514 CASP1 "AT2G36100" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 8.0e-06, P = 8.0e-06
 Identities = 43/141 (30%), Positives = 61/141 (43%)

Query:     7 ICTFSLRVIAILTTFSATIVMITSHERVRL--NEVSYEAKYSDMPTFKFFVIANAIVCIY 64
             I  F LR+ AI  T  A  VM T+ E +      + ++A Y D+P F++FVIA A+V  Y
Sbjct:    47 IFDFLLRLAAIAVTIGAASVMYTAEETLPFFTQFLQFQAGYDDLPAFQYFVIAVAVVASY 106

Query:    65 GXXXXXXXXXXXXWGLIVALDMVL---D---VTSSISAALAIGQVEKNGNCFHPGCYNQP 118
                              VA  ++L   D   VT + SAA A   +       H G  NQ 
Sbjct:   107 LVLSLPFSIVSIVRPHAVAPRLILLICDTLVVTLNTSAAAAAASITYLA---HNG--NQS 161

Query:   119 AGNIPRTEQLLSACLSFSTTL 139
                +P  +Q    C + ST +
Sbjct:   162 TNWLPICQQFGDFCQNVSTAV 182

GO:0005515 "protein binding" evidence=IPI

GO:0007043 "cell-cell junction assembly" evidence=IDA

GO:0042545 "cell wall modification" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0048226 "Casparian strip" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9N5U6	CSPL4_POPTR	No assigned EC number	0.5083	0.7857	0.6432	yes	no
B9N2D0	CSPLK_POPTR	No assigned EC number	0.5166	0.7857	0.6790	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.142.27.1 hypothetical protein (159 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
pfam04535	150	pfam04535, DUF588, Domain of unknown function (DUF	9e-21
TIGR01569	154	TIGR01569, A_tha_TIGR01569, plant integral membran	2e-20

>gnl|CDD|218134 pfam04535, DUF588, Domain of unknown function (DUF588)

 Score = 81.6 bits (202), Expect = 9e-21
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 13/115 (11%)

Query: 6   RICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYG 65
           R+    LR+ A +   +A +VM T+ +      +  +A +SD+P F++ V+ANAI   Y 
Sbjct: 5   RLAELVLRLAAFVLALAAAVVMGTNKQTKPFFFIQKKASFSDLPAFRYLVVANAIAAGYS 64

Query: 66  LLVLCL----------PSKSLLWGLIVALDMVLD--VTSSISAALAIGQVEKNGN 108
           LL L L           +K L W L+  LD V+   + ++ SAA AI  + +NGN
Sbjct: 65  LLQLVLSVYLLSRKKPRTKGLAW-LLFILDQVMAYLLLAAASAAAAIVYLARNGN 118

This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices. Length = 150

>gnl|CDD|233471 TIGR01569, A_tha_TIGR01569, plant integral membrane protein TIGR01569

 Score = 80.9 bits (200), Expect = 2e-20
 Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 11/110 (10%)

Query: 10  FSLRVIAILTTFSATIVMITSHER--VRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLL 67
             LRV+A   T +A IVM T+ E   V +  ++++AK+SD+P F +FV+ANAI C Y LL
Sbjct: 1   LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLL 60

Query: 68  VLCLPSKSLLWG---------LIVALDMVLDVTSSISAALAIGQVEKNGN 108
            L +    LL             + L M+  ++S  SAA A+  V K GN
Sbjct: 61  SLVVSIFGLLKRRVFFKLIALFFLDLVMLALLSSGTSAAAAVAYVGKLGN 110

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
TIGR01569	154	A_tha_TIGR01569 plant integral membrane protein TI	100.0
PF04535	149	DUF588: Domain of unknown function (DUF588); Inter	100.0
PF01284	144	MARVEL: Membrane-associating domain; InterPro: IPR	96.58

>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569

Probab=100.00  E-value=1.1e-38  Score=241.59  Aligned_cols=123  Identities=37%  Similarity=0.503  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccceeeeee--eeeeEEeecchhHHHHHHHHHHHHHHHHHHHHh------CCCCc-chhh
Q 041640           10 FSLRVIAILTTFSATIVMITSHERVRLNE--VSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCL------PSKSL-LWGL   80 (140)
Q Consensus        10 l~LR~~~~~~~~aa~~vM~t~~qt~~~~~--~~~~a~~~d~~af~ylv~an~i~~~Ysll~l~~------~~~~~-~~~~   80 (140)
                      ++||+++++++++|+++|+||+||.+++.  +++++||+|+|+|+|||++|+|+++|+++|+++      +++.. ..++
T Consensus         1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~~~~~   80 (154)
T TIGR01569         1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFFKLIA   80 (154)
T ss_pred             CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence            47999999999999999999999999988  999999999999999999999999999999998      33322 2349


Q ss_pred             hhhhHHHHH--HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccchhHHhHhhhhhcccC
Q 041640           81 IVALDMVLD--VTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSACLSFSTTLA  140 (140)
Q Consensus        81 ~f~~D~v~~--l~sa~aAA~~v~~l~~~G~~~~~~~~~~~~~W~~vC~~~~~FC~~~~~sl~  140 (140)
                      +|++||+++  ++||++||++++|++|+||+        |.+|+|+|++|++||+|+++|++
T Consensus        81 ~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~--------~~~W~~iC~~~~~FC~~~~~sl~  134 (154)
T TIGR01569        81 LFFLDLVMLALLSSGTSAAAAVAYVGKLGNK--------EAGWLKICGVFGKFCDRIAGSLA  134 (154)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHcccc--------ccchhhHHHHHHHHHHHHHHHHH
Confidence            999999999  99999999999999999999        99999999999999999999863

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.

>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity

Probab=100.00  E-value=4.9e-36  Score=224.67  Aligned_cols=130  Identities=35%  Similarity=0.507  Sum_probs=120.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhccceeeeeeeeeeEEeecchhHHHHHHHHHHHHHHHHHHHHh------CCC--
Q 041640            3 TIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCL------PSK--   74 (140)
Q Consensus         3 k~~~~~~l~LR~~~~~~~~aa~~vM~t~~qt~~~~~~~~~a~~~d~~af~ylv~an~i~~~Ysll~l~~------~~~--   74 (140)
                      |..+..+++||+++++++++|+++|++|+||.++..++.++||+|+++|+|+|++|+|+++|+++|+++      +++  
T Consensus         1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~~~   80 (149)
T PF04535_consen    1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGKLR   80 (149)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            567899999999999999999999999999999999999999999999999999999999999999999      222  


Q ss_pred             C-cchhhhhhhHHHHH--HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccchhHHhHhhhhhcccC
Q 041640           75 S-LLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSACLSFSTTLA  140 (140)
Q Consensus        75 ~-~~~~~~f~~D~v~~--l~sa~aAA~~v~~l~~~G~~~~~~~~~~~~~W~~vC~~~~~FC~~~~~sl~  140 (140)
                      . ...+++|++||+++  ++||++||+++++++++||+        |.+|+++|+.+++||+|+++|++
T Consensus        81 ~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~--------~~~W~~vC~~~~~FC~~~~~sv~  141 (149)
T PF04535_consen   81 SKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNS--------HVQWSKVCSQFGKFCNRAAASVA  141 (149)
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc--------cccchhhccchhhHHHHHHHHHH
Confidence            1 22349999999999  99999999999999999999        99999999999999999999863

It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.

>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain

Probab=96.58  E-value=0.019  Score=41.12  Aligned_cols=78  Identities=15%  Similarity=0.206  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccceeeeeeeeeeEEeecchhHHHHHHHHHHHHHHHHHHHHh---C---CCCcch-
Q 041640            6 RICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCL---P---SKSLLW-   78 (140)
Q Consensus         6 ~~~~l~LR~~~~~~~~aa~~vM~t~~qt~~~~~~~~~a~~~d~~af~ylv~an~i~~~Ysll~l~~---~---~~~~~~-   78 (140)
                      +....+||+++++++++...+++....+..      .......+...|.+.+.++...+++..+..   +   .....| 
T Consensus         3 ~s~~~ilR~lq~~~~~i~~~l~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~   76 (144)
T PF01284_consen    3 RSPSGILRILQLVFALIIFGLVASSIATGS------QIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFSLKYRPRIPWP   76 (144)
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHHHHHhccc------cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            456789999999999999999998774211      123566777888999888888888777766   1   122222 


Q ss_pred             hhhhhhHHHHH
Q 041640           79 GLIVALDMVLD   89 (140)
Q Consensus        79 ~~~f~~D~v~~   89 (140)
                      ...+..|.+++
T Consensus        77 ~~~~~~~~v~~   87 (144)
T PF01284_consen   77 LVEFIFDAVFA   87 (144)
T ss_pred             hhHHHHHHHHH
Confidence            37899999999

The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00