Citrus Sinensis ID: 041643

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570------
Protein Sequence
MAATVTHVASAVVVEEEKSQSLQEELSLPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLATSSQPLYERPIRRVAADVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAGSHPHRQTYAP
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccccHccHHHccccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MAATVTHVASAVVVEEEKSQSLQEELSLPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLatssqplyerpIRRVAADVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIfdsdevnlslppiasndpiLAWVWSFISTIQMGQIKSRVDAANELASLArdnnrnrkiIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIaldlpkpesaktTIHSLVQMKKEMTEkstnvtnnsdgssrgghgqhynkkdreletpeVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESdamlqtpairsigclaktfpakekrmigPLVALLSNRNVDVATEAVIALSKfvspdnfnrsehskaiiefdgvpplmRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEGAartvlpqhpelRDLFAQAIYHLTLyqagshphrqtyap
Flexible Loop (DISEMBL)
maatvthvasavvveeeksqslqeelSLPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRlatssqplyerpiRRVAADVAKNLDRSLTLVRRCkhagvlrhvfsittnadfKKVFSLLESSIGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELAslardnnrnrkiIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKStnvtnnsdgssrgghgqhynkkdreletpeVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDamlqtpaiRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALskfvspdnfnrSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYqagshphrqtyap
Low Complexity Region (SEG)
MaatvthvasavvveeeksqslqeelslPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLATSSQPLYERPIRRVAADVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAGSHPHRQTYAP
Disordered region (IsUnstruct)
****************************PILLAD*****************************LRSCVRLATSSQPLYERPIRRVAADVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDL*******************************************************KAKVRIACAEALWKLSKGCLLSLWSAES***************AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQA***********
Disordered Region (DISOPRED)
************************ELSLPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLATSSQPLYERPIRRVAADVAKNLDRS**********GVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK***********************************EVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLY*************
Disordered Region (DISEMBL)
MAATVTHVASAVV***********ELSLPILLADRVIK***********CAELRKQVERLSQMLRSCVRLATSSQPLYERPIRRVAADVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEM*******************************TPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAGSHPHRQTYAP
Disordered Region (DISPRO)
****************EKSQSLQEELSLPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLATSSQPLYERPIRRVAADVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEM***************************RELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAGS*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAATVTHVASAVVVEEEKSQSLQEELSLPILLADRxxxxxxxxxxxxxxxxxxxxxxxxxxxxLRSCVRLATSSQPLYERPIRRVAADVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAGSHPHRQTYAP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	576	2.2.26 [Sep-21-2011]
Q5VRH9	611	U-box domain-containing p	no	no	0.171	0.162	0.34	0.0004

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 1/100 (1%)

Query: 156 SNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKE 215
           S+D   A + S ++ ++ G    +  AA E+  LA+ N  NR I + E G +PLL  L  
Sbjct: 317 SSDYDHAGLVSLMNRLRSGNQDEQRAAAGEIRLLAKRNVNNR-ICIAEAGAIPLLVNLLS 375

Query: 216 AASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVL 255
           ++ P  Q  A  AL N++  +     IVD   +P IV VL
Sbjct: 376 SSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVL 415

Possesses E3 ubiquitin-protein ligase in vitro.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	576
224135917	596	predicted protein [Populus trichocarpa]	0.958	0.926	0.646	0.0
255540541	602	hypothetical protein RCOM_1509330 [Ricin	0.960	0.918	0.617	0.0
147818488	617	hypothetical protein VITISV_023591 [Viti	0.968	0.904	0.585	0.0
225456918	606	PREDICTED: uncharacterized protein LOC10	0.968	0.920	0.594	0.0
356513731	602	PREDICTED: uncharacterized protein LOC10	0.928	0.888	0.575	0.0
297733721	1372	unnamed protein product [Vitis vinifera]	0.956	0.401	0.581	0.0
356562688	601	PREDICTED: uncharacterized protein LOC10	0.949	0.910	0.572	1e-178
449487839	615	PREDICTED: uncharacterized LOC101205472	0.949	0.889	0.537	1e-175
449469721	642	PREDICTED: uncharacterized protein LOC10	0.947	0.850	0.538	1e-175
357485695	656	hypothetical protein MTR_5g033190 [Medic	0.946	0.830	0.521	1e-173

>gi|224135917|ref|XP_002322193.1| predicted protein [Populus trichocarpa] gi|222869189|gb|EEF06320.1| predicted protein [Populus trichocarpa]

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/592 (64%), Positives = 469/592 (79%), Gaps = 40/592 (6%)

Query: 22  LQEELSLPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLATSSQPLYERP 81
           + +ELSLPILLADRVIKSAQEAES +Q+C++L KQV+RLSQMLRS VRLA S   LY+RP
Sbjct: 8   ISKELSLPILLADRVIKSAQEAESLRQDCSDLAKQVDRLSQMLRSAVRLAVSIPSLYDRP 67

Query: 82  IRRVAADVAKNLDRSLTLVRRCK-HAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLT 140
           +RR+A+D+ +NLDR+LTLVR+CK H+GVLR VFSITT ADF+KV +LLESSIGDM+WLL+
Sbjct: 68  LRRIASDITRNLDRALTLVRKCKKHSGVLRQVFSITTTADFRKVSNLLESSIGDMKWLLS 127

Query: 141 IFDSDE-VNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKI 199
           +F+SD   +LSLPPIASNDPILAWVWS IS +QMGQ+K RVDAAN+LASLARDN+RN+K+
Sbjct: 128 VFESDGGAHLSLPPIASNDPILAWVWSSISAVQMGQVKDRVDAANQLASLARDNDRNKKM 187

Query: 200 IVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAP 259
           IVEEGGILPLLKLLKE AS +AQ AAA AL NIA+D+E VR IVD LG+ +IV VLG++ 
Sbjct: 188 IVEEGGILPLLKLLKEGASAEAQIAAATALSNIASDRERVRLIVDALGISMIVGVLGDSQ 247

Query: 260 VKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLV 319
            KVQ++VANLVARMA LD  AQ+EF+R NVTR L+SLL   + L++      KT+I SL+
Sbjct: 248 TKVQISVANLVARMAALDDYAQDEFMRLNVTRPLVSLLSSHLDLEIASNNPVKTSIPSLI 307

Query: 320 QMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKG- 378
           +M K++  K  N+  N +  S    G H NK +RE+ETPE++ K++++CAEALWKLS+G 
Sbjct: 308 EMNKKLAYK--NIKANYNSDSSSHGGSHSNK-EREMETPEMQLKLKVSCAEALWKLSRGS 364

Query: 379 ------------------------------CLLSLWS----AESNAELRRSAFKTNSPAA 404
                                         CL+++      AESNA+LRR+AFKTN PAA
Sbjct: 365 VSNSRKITETKGLLCLAKIVEREKGELQFNCLMTIMEITAVAESNADLRRAAFKTNLPAA 424

Query: 405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEA 464
           KAVLDQLLR+I EESD  LQ PAIRSIGCLA+TFPA+E R++GPLV+ L NRNV+VATEA
Sbjct: 425 KAVLDQLLRVIQEESDPQLQIPAIRSIGCLARTFPARETRIMGPLVSHLGNRNVEVATEA 484

Query: 465 VIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSK 524
            IAL KF SP+NFN SEHSKAIIEFDGVPPLM+LL+  D++Q+ GLV LCYLAL+AGNSK
Sbjct: 485 AIALGKFASPENFNCSEHSKAIIEFDGVPPLMKLLRSGDQSQLQGLVLLCYLALNAGNSK 544

Query: 525 ALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAGSHPHRQTYAP 576
           ALEQARALNALEG AR+VL QHPEL+DLFA+AI+HLTLYQAG+  +RQ+ AP
Sbjct: 545 ALEQARALNALEGTARSVLAQHPELKDLFAKAIHHLTLYQAGAPLNRQSLAP 596

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540541|ref|XP_002511335.1| hypothetical protein RCOM_1509330 [Ricinus communis] gi|223550450|gb|EEF51937.1| hypothetical protein RCOM_1509330 [Ricinus communis]

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/609 (61%), Positives = 470/609 (77%), Gaps = 56/609 (9%)

Query: 10  SAVVVEEEKSQSLQEELSLPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVR 69
           +A V   E+ +SLQ++L+L ILLADRVIKSAQE+ESSKQ+C++L KQV+RLS++LRS VR
Sbjct: 5   AAAVTSREEERSLQDDLALLILLADRVIKSAQESESSKQDCSDLSKQVDRLSELLRSVVR 64

Query: 70  LATSSQPLYERPIRRVAADVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLE 129
             + +  LY+RP+RR+ +D+ KNL+R+LTLVR+CKH  VLR VFSIT+  DF+KV +L+E
Sbjct: 65  FTSCTPSLYDRPLRRIISDITKNLERALTLVRKCKHNNVLRQVFSITSTTDFRKVSNLVE 124

Query: 130 SSIGDMRWLLTIFDSDE-VNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELAS 188
           SSIGDM+WLL+IF+SD  ++LSLPPIASNDPILAWVW++ISTIQMGQIK R DAANELAS
Sbjct: 125 SSIGDMKWLLSIFESDGGLSLSLPPIASNDPILAWVWTYISTIQMGQIKDRTDAANELAS 184

Query: 189 LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGV 248
           LA+D++RN+K+IVEE          +  +SPDAQ AA +ALFNIATDQE VR IV+ LG 
Sbjct: 185 LAKDSDRNKKMIVEE----------ESYSSPDAQVAAISALFNIATDQERVRLIVEFLGA 234

Query: 249 PIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKP 308
           PIIV+VLG+A +KVQ+AVANLVARMAELD  AQEEFV +NVTR LISLL  D+ LD    
Sbjct: 235 PIIVAVLGDATIKVQIAVANLVARMAELDPYAQEEFVTQNVTRPLISLLSTDLVLDTANS 294

Query: 309 ----ESAKTTIHSLVQMKKEMTEKSTNVTN--NSDGSSRGGHGQHYNKKDRELETPEVKA 362
               ESAKT+IHSLVQM KE+T K++ +    + DGSS   HG  +++K+RE++ PEV+ 
Sbjct: 295 NSSNESAKTSIHSLVQMNKELTYKNSRINRILSLDGSS---HGSSHHRKEREMQPPEVQL 351

Query: 363 KVRIACAEALWKLSKG-------------------------------CLLSLWS----AE 387
           K++++C  ALWKLS G                               CL+++      AE
Sbjct: 352 KLKVSCVLALWKLSTGSVSNSKKITETKGLLCLAKIIEKEKGDLQLNCLMTVMEITAVAE 411

Query: 388 SNAELRRSAFKTNSPAAKAVLDQLLRLIHEE-SDAMLQTPAIRSIGCLAKTFPAKEKRMI 446
           SN +LRR+AFKTN P A A+L+QLLR+I EE +D +LQ PAIRSIGCLA+TFPA+E R+I
Sbjct: 412 SNTDLRRAAFKTNWPPAMAILNQLLRVIQEEENDPVLQIPAIRSIGCLARTFPARETRII 471

Query: 447 GPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQ 506
           GPLVA L NRNV+VATEA IAL KFV PDNFN ++HSK IIEFDGVPPLMRL++  D+AQ
Sbjct: 472 GPLVARLGNRNVEVATEAAIALGKFVCPDNFNCAQHSKTIIEFDGVPPLMRLIRNGDQAQ 531

Query: 507 VHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAG 566
           VHGLV LC LAL+AGNSKALEQARALNAL+GAAR ++ QHPEL+DLF +AI+HLTLYQAG
Sbjct: 532 VHGLVLLCCLALNAGNSKALEQARALNALQGAARPLIIQHPELKDLFVKAIHHLTLYQAG 591

Query: 567 SHPHRQTYA 575
           +HPH Q +A
Sbjct: 592 AHPHTQPFA 600

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818488|emb|CAN76390.1| hypothetical protein VITISV_023591 [Vitis vinifera]

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/618 (58%), Positives = 463/618 (74%), Gaps = 60/618 (9%)

Query: 16  EEKSQSLQEELSLPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLATSSQ 75
           E + +++Q+EL++ I LADRVIKSA+EAESSK EC+E+ +QVERLS+MLRS  RLATS+Q
Sbjct: 3   EVEEKTIQDELTVTIQLADRVIKSAEEAESSKAECSEIARQVERLSKMLRSAARLATSTQ 62

Query: 76  PLYERPIRRVAADVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDM 135
            LYERP+RR+AADV KNLDR+LTLVR+CKH+GVLR VFSITT ADF+KV +LLESSIGD+
Sbjct: 63  WLYERPVRRIAADVTKNLDRALTLVRKCKHSGVLRQVFSITTAADFRKVLALLESSIGDL 122

Query: 136 RWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNR 195
           +WL+TI D D++NL+LPPIA+NDP LAWVWS+I+TIQMGQ++ RV+AAN L  LA  N+R
Sbjct: 123 KWLVTIVDPDDINLTLPPIANNDPTLAWVWSYIATIQMGQLRDRVEAANALVLLAHKNDR 182

Query: 196 NRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVL 255
            +KI+V+EGGI+PLLKLLKE AS DAQ AAANALF+I  ++E VR I D  GVPIIV VL
Sbjct: 183 TKKIVVDEGGIMPLLKLLKEGASADAQIAAANALFHIGNEEERVRSIADAAGVPIIVQVL 242

Query: 256 GEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMD--IALDLPKPESAKT 313
           GE+ ++VQV+VANLVARMAE+DS  +E F RENVTR L+SLL +D  + LD PK + +K 
Sbjct: 243 GESVMRVQVSVANLVARMAEMDSAVREAFARENVTRPLVSLLSVDTVLVLDDPKLKPSKP 302

Query: 314 TIHSLVQMKKEMTEKST-------NVTNNSDGSSRGGHGQH-------------YNKKDR 353
           +I SLVQ  KE+  KS        ++ + S  +S GGH                +N+KDR
Sbjct: 303 SISSLVQFNKELAGKSAGHNSYNPSLNSVSSFTSSGGHSSLSVHSSSEGSSRGGHNRKDR 362

Query: 354 ELETPEVKAKVRIACAEALWKLSK-------------------------------GCLLS 382
           E+ETPE+K K++++CAEALWKLSK                                CL++
Sbjct: 363 EVETPELKLKLKVSCAEALWKLSKDSVLNSRKITETKGLICLAKIIEKEKGELQYNCLMA 422

Query: 383 LWS----AESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTF 438
           +      AE +A+LRR+AFKT+SPAAKAVLDQLLR+I EES + ++ PAI+SIG LA+TF
Sbjct: 423 VMEIAMVAEQDADLRRAAFKTSSPAAKAVLDQLLRVIQEESSSTMKIPAIKSIGSLARTF 482

Query: 439 PAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRL 498
           PA+E R+IGPLVA LSN + +VA EA IAL KFV P+NFNR EH+KAIIEFDGVPPL+RL
Sbjct: 483 PARETRIIGPLVAQLSNSDNEVAIEATIALGKFVHPENFNRVEHAKAIIEFDGVPPLLRL 542

Query: 499 LKISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIY 558
           L+ S+RA ++GL+ L YLAL  GNSKALEQA+AL+ L+ A R+ +PQ  + ++LFA+AI+
Sbjct: 543 LRTSERANIYGLILLSYLALHVGNSKALEQAQALSVLDLAIRSGVPQ--DYKELFARAIH 600

Query: 559 HLTLYQAGSHPHRQTYAP 576
           +L LYQAG H HR  Y P
Sbjct: 601 NLNLYQAGVHTHR-PYPP 617

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456918|ref|XP_002277976.1| PREDICTED: uncharacterized protein LOC100262114 [Vitis vinifera]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/607 (59%), Positives = 459/607 (75%), Gaps = 49/607 (8%)

Query: 16  EEKSQSLQEELSLPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLATSSQ 75
           E + +++Q+EL++ I LADRVIKSA+EAESSK EC+E+ +QVERLS+MLRS  RLATS+Q
Sbjct: 3   EVEEKTIQDELTVTIQLADRVIKSAEEAESSKAECSEIARQVERLSKMLRSAARLATSTQ 62

Query: 76  PLYERPIRRVAADVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDM 135
            LYERP+RR+AADV KNLDR+LTLVR+CKH+GVLR VFSITT ADF+KV +LLESSIGD+
Sbjct: 63  WLYERPVRRIAADVTKNLDRALTLVRKCKHSGVLRQVFSITTAADFRKVLALLESSIGDL 122

Query: 136 RWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNR 195
           +WL+TI D D++NL+LPPIA+NDP LAWVWS+I+TIQMGQ++ RV+AAN L  LA  N+R
Sbjct: 123 KWLVTIVDPDDINLTLPPIANNDPTLAWVWSYIATIQMGQLRDRVEAANALVLLAHKNDR 182

Query: 196 NRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVL 255
            +KI+V+EGGI+PLLKLLKE AS DAQ AAANALF+I  ++E VR I D  GVPIIV VL
Sbjct: 183 TKKIVVDEGGIMPLLKLLKEGASADAQIAAANALFHIGNEEERVRSIADAAGVPIIVQVL 242

Query: 256 GEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMD--IALDLPKPESAKT 313
           GE+ ++VQV+VANLVARMAE+DS  +E F RENVTR L+SLL +D  + LD PK + +K 
Sbjct: 243 GESVMRVQVSVANLVARMAEMDSAVREAFARENVTRPLVSLLSVDTVLVLDDPKLKPSKP 302

Query: 314 TIHSLVQMKKEMTEKST-----NVTNNSDGS----SRGGHGQHYNKKDRELETPEVKAKV 364
           +I SLVQ  KE+  KS      N + NS  S            +N+KDRE+ETPE+K K+
Sbjct: 303 SISSLVQFNKELAGKSAGHNSYNPSLNSVSSFTSSGGHSSRGGHNRKDREVETPELKLKL 362

Query: 365 RIACAEALWKLSK-------------------------------GCLLSLWS----AESN 389
           +++CAEALWKLSK                                CL+++      AE +
Sbjct: 363 KVSCAEALWKLSKDSVLNSRKITETKGLICLAKIIEKEKGELQYNCLMAVMEIAMVAEQD 422

Query: 390 AELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPL 449
           A+LRR+AFKT+SPAAKAVLDQLLR+I EES + ++ PAI+SIG LA+TFPA+E R+IGPL
Sbjct: 423 ADLRRAAFKTSSPAAKAVLDQLLRVIQEESSSTMKIPAIKSIGSLARTFPARETRIIGPL 482

Query: 450 VALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHG 509
           VA LSN + +VA EA IAL KFV P+NFNR EH+KAIIEFDGVPPL+RLL+ S+RA ++G
Sbjct: 483 VAQLSNSDNEVAIEATIALGKFVHPENFNRVEHAKAIIEFDGVPPLLRLLRTSERANIYG 542

Query: 510 LVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAGSHP 569
           L+ L YLAL  GNSKALEQA+AL+ L+ A R+ +PQ  + ++LFA+AI++L LYQAG H 
Sbjct: 543 LILLSYLALHVGNSKALEQAQALSVLDLAIRSGVPQ--DYKELFARAIHNLNLYQAGVHT 600

Query: 570 HRQTYAP 576
           HR  Y P
Sbjct: 601 HR-PYPP 606

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513731|ref|XP_003525564.1| PREDICTED: uncharacterized protein LOC100813824 [Glycine max]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/582 (57%), Positives = 420/582 (72%), Gaps = 47/582 (8%)

Query: 29  PILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLATSSQPLYERPIRRVAAD 88
           PILL +RVIK AQEAESSK +C EL ++V+ +   LRS VR+ + +Q L ERPIRR+  +
Sbjct: 26  PILLGERVIKLAQEAESSKVDCTELARKVQVVCDNLRSVVRVVSGAQCLNERPIRRIVGE 85

Query: 89  VAKNLDRSLTLVRRCK-HAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIFDS-DE 146
           V KNL+R+L  +R+CK H GVLR VFS+TT ADF+KV+SLLESS GD+ WLLTI DS D 
Sbjct: 86  VFKNLERTLAFIRKCKKHGGVLRQVFSMTTTADFRKVWSLLESSNGDLVWLLTILDSKDG 145

Query: 147 VNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGI 206
            N+SLPPIASNDPILAWVW+F  T+Q+GQ K R +AA EL SLARDN+R + II+EEGG+
Sbjct: 146 TNVSLPPIASNDPILAWVWTFTYTLQLGQPKDRAEAATELGSLARDNDRTKFIILEEGGV 205

Query: 207 LPLLKLLKEAASPDAQTAAANALFNIATDQE-TVRFIVDVLGVPIIVSVLGEAPVKVQVA 265
           +PLLKLLKEA+ PDAQ AAANAL NI T+Q+  V FIV+   VP IV VLG++P++V+V+
Sbjct: 206 MPLLKLLKEASFPDAQIAAANALVNITTNQDRIVGFIVESHAVPTIVQVLGDSPMRVRVS 265

Query: 266 VANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEM 325
           VANLV+ MAE   + +EEF+R NVTR L+SLL MD+   L  P + + +IHSLV     +
Sbjct: 266 VANLVSTMAEQHELVREEFIRANVTRPLVSLLSMDMGTVLADPMAGRASIHSLVLNLSNV 325

Query: 326 TEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWS 385
            E       NSDGSSRG   Q   ++DRE+E+PE++ +V+I+CA+ALWKLSKGCL S   
Sbjct: 326 GEA------NSDGSSRGSSHQ---RRDREVESPELRNEVKISCAKALWKLSKGCLSSCRK 376

Query: 386 -----------------------------------AESNAELRRSAFKTNSPAAKAVLDQ 410
                                              AESNA+LRR+AFK  +PAAKAVLDQ
Sbjct: 377 ITETKGLLCLAKIIESESGELQLNCLMAVMEIAAVAESNADLRRAAFKRTAPAAKAVLDQ 436

Query: 411 LLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSK 470
           LLR++ EESD  L+ PAI++IG LA+ F  K  ++IGPLVA L NR+VDVA+EA IAL K
Sbjct: 437 LLRVVQEESDPALRIPAIKAIGSLARNFSGKVPQVIGPLVAQLGNRDVDVASEAAIALGK 496

Query: 471 FVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQAR 530
           FV PDN+N  +HSKAI+E DG+P LM LL+I+DR QVHGL  LCYLAL+ GNSK LEQ R
Sbjct: 497 FVCPDNYNCIDHSKAILELDGIPKLMSLLQINDRQQVHGLKLLCYLALNVGNSKVLEQER 556

Query: 531 ALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAGSHPHRQ 572
           ALN LE  AR V  QHP+++DLFA+AI+HLTLYQ G+  HRQ
Sbjct: 557 ALNTLERFARPVQAQHPDMKDLFAKAIHHLTLYQPGAQLHRQ 598

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733721|emb|CBI14968.3| unnamed protein product [Vitis vinifera]

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/593 (58%), Positives = 446/593 (75%), Gaps = 42/593 (7%)

Query: 9    ASAVVVEEEKSQSLQEELSLPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCV 68
            A A ++ E + +++Q+EL++ I LADRVIKSA+EAESSK EC+E+ +QVERLS+MLRS  
Sbjct: 763  AFAAIMGEVEEKTIQDELTVTIQLADRVIKSAEEAESSKAECSEIARQVERLSKMLRSAA 822

Query: 69   RLATSSQPLYERPIRRVAADVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLL 128
            RLATS+Q LYERP+RR+AADV KNLDR+LTLVR+CKH+GVLR VFSITT ADF+KV +LL
Sbjct: 823  RLATSTQWLYERPVRRIAADVTKNLDRALTLVRKCKHSGVLRQVFSITTAADFRKVLALL 882

Query: 129  ESSIGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELAS 188
            ESSIGD++WL+TI D D++NL+LPPIA+NDP LAWVWS+I+TIQMGQ++ RV+AAN L  
Sbjct: 883  ESSIGDLKWLVTIVDPDDINLTLPPIANNDPTLAWVWSYIATIQMGQLRDRVEAANALVL 942

Query: 189  LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGV 248
            LA  N+R +KI+V+EGGI+PLLKLLKE AS DAQ AAANALF+I  ++E VR I D  GV
Sbjct: 943  LAHKNDRTKKIVVDEGGIMPLLKLLKEGASADAQIAAANALFHIGNEEERVRSIADAAGV 1002

Query: 249  PIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKP 308
            PIIV VLGE+ ++VQV+VANLVARMAE+DS  +E F RENVTR L+SLL +D  L     
Sbjct: 1003 PIIVQVLGESVMRVQVSVANLVARMAEMDSAVREAFARENVTRPLVSLLSVDTVLS---- 1058

Query: 309  ESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIAC 368
             +   + +  +      T    + + +   SS G     +N+KDRE+ETPE+K K++++C
Sbjct: 1059 -AGHNSYNPSLNSVSSFTSSGGHSSLSVHSSSEGSSRGGHNRKDREVETPELKLKLKVSC 1117

Query: 369  AEALWKLSK-------------------------------GCLLSLWS----AESNAELR 393
            AEALWKLSK                                CL+++      AE +A+LR
Sbjct: 1118 AEALWKLSKDSVLNSRKITETKGLICLAKIIEKEKGELQYNCLMAVMEIAMVAEQDADLR 1177

Query: 394  RSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALL 453
            R+AFKT+SPAAKAVLDQLLR+I EES + ++ PAI+SIG LA+TFPA+E R+IGPLVA L
Sbjct: 1178 RAAFKTSSPAAKAVLDQLLRVIQEESSSTMKIPAIKSIGSLARTFPARETRIIGPLVAQL 1237

Query: 454  SNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFL 513
            SN + +VA EA IAL KFV P+NFNR EH+KAIIEFDGVPPL+RLL+ S+RA ++GL+ L
Sbjct: 1238 SNSDNEVAIEATIALGKFVHPENFNRVEHAKAIIEFDGVPPLLRLLRTSERANIYGLILL 1297

Query: 514  CYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAG 566
             YLAL  GNSKALEQA+AL+ L+ A R+ +PQ  + ++LFA+AI++L LYQAG
Sbjct: 1298 SYLALHVGNSKALEQAQALSVLDLAIRSGVPQ--DYKELFARAIHNLNLYQAG 1348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562688|ref|XP_003549601.1| PREDICTED: uncharacterized protein LOC100817625 [Glycine max]

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 342/597 (57%), Positives = 433/597 (72%), Gaps = 50/597 (8%)

Query: 15  EEEKSQSLQEELSLPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLATSS 74
           EEEKS  L++EL  PILL +RVIK AQEAES K +C EL ++V+ +   LRS VR+ + +
Sbjct: 12  EEEKS--LRDELLGPILLGERVIKLAQEAESPKVDCTELARKVQVVCDNLRSVVRVVSGT 69

Query: 75  QPLYERPIRRVAADVAKNLDRSLTLVRRCK-HAGVLRHVFSITTNADFKKVFSLLESSIG 133
           Q + ERPIRR+  +V+KN++R+L L+R+CK H GVLR VFS+TT ADF+KV SLLESS G
Sbjct: 70  QCVNERPIRRIVGEVSKNIERTLALIRKCKKHGGVLRQVFSMTTTADFRKVRSLLESSNG 129

Query: 134 DMRWLLTIFDS-DEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARD 192
           D+ WLLTI DS D  N+SLPPIASNDPILAWVW+F  T+Q+GQ K R +AA EL SLARD
Sbjct: 130 DLVWLLTILDSKDGTNVSLPPIASNDPILAWVWTFTYTLQLGQPKDRAEAATELGSLARD 189

Query: 193 NNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE-TVRFIVDVLGVPII 251
           N+R + II++EGG++PLLKLLKEA+SP AQ AAANAL NI T+Q+  V FIV+   VPII
Sbjct: 190 NDRTKFIILDEGGVMPLLKLLKEASSPAAQVAAANALVNITTNQDRVVTFIVESHAVPII 249

Query: 252 VSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESA 311
           V VLG++P++V+V+VANLV+ MAE   +A+EEFVR NV R L+SLL MD+   L  P + 
Sbjct: 250 VQVLGDSPMRVRVSVANLVSAMAEQHELAREEFVRANVARPLVSLLSMDMGTVLTDPVAD 309

Query: 312 K-TTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAE 370
           + T+IHSLV     + E       NSDGSSRG  GQH  ++DRE+E+PE++ +V+++CA+
Sbjct: 310 RATSIHSLVLNLSNVGEA------NSDGSSRGS-GQH--RRDREVESPELRNEVKVSCAK 360

Query: 371 ALWKLSKGCLLSLWS-----------------------------------AESNAELRRS 395
           ALWKLS GCL S                                      AESNA+LRR+
Sbjct: 361 ALWKLSNGCLSSCRKITETKGLLCLAKIIESESGELQLNCLMAVMEIAAVAESNADLRRA 420

Query: 396 AFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSN 455
           AFK  +PAAKAVLDQLLR++ EESD  L+ PAI++IG LA+ F  K  ++IGPLVA L N
Sbjct: 421 AFKRTAPAAKAVLDQLLRVVQEESDPALRIPAIKAIGSLARNFSGKVPQVIGPLVAQLGN 480

Query: 456 RNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCY 515
           R+VDVA+EA IAL KFV PDN+N  +HSKAI+E DG+P LM LL+I+DR QVHGL  LCY
Sbjct: 481 RDVDVASEAAIALGKFVCPDNYNCVDHSKAILELDGIPKLMSLLQINDRQQVHGLKLLCY 540

Query: 516 LALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAGSHPHRQ 572
           LAL+ GNS+ LEQ RALN LE  AR V  QHP+L+DLFA+A++HLTLYQ G+  HRQ
Sbjct: 541 LALNVGNSRVLEQERALNTLERFARPVQAQHPDLKDLFAKALHHLTLYQPGAQLHRQ 597

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487839|ref|XP_004157826.1| PREDICTED: uncharacterized LOC101205472 [Cucumis sativus]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 321/597 (53%), Positives = 436/597 (73%), Gaps = 50/597 (8%)

Query: 24  EELSLPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRL-ATSSQPLYERPI 82
            E + PILLAD++++ AQEA S +QEC +L KQV+++ +ML++ VRL  T++QPLYERPI
Sbjct: 25  HEFTPPILLADKILRLAQEAVSLRQECVDLAKQVDKIYRMLQATVRLITTTTQPLYERPI 84

Query: 83  RRVAADVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIF 142
           RR+ ADV+KNLDR+ + V +C+H G LR VFS+TT ADF+KV SLLESSIGDM+WLL+IF
Sbjct: 85  RRIVADVSKNLDRAWSFVSKCRHGGFLRQVFSMTTIADFRKVSSLLESSIGDMKWLLSIF 144

Query: 143 DSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVE 202
           DSD   + LPPIASNDP LA++W  I+TIQMG +++RV+AAN+L    R N+RN+KI++E
Sbjct: 145 DSDG-TVGLPPIASNDPTLAYIWPNIATIQMGSVRNRVEAANQLTLHTRGNDRNQKIVME 203

Query: 203 EGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKV 262
           EGG+ PLLKLLKE +SPDAQ AAAN L N+A+  + V  IV++ GVPIIV VL ++P++V
Sbjct: 204 EGGVPPLLKLLKEYSSPDAQIAAANVLINVASVTDRVESIVNIPGVPIIVQVLNDSPMRV 263

Query: 263 QVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK 322
           Q+ VA LV++MAEL  +AQEEF RENVT+ L++ L +D+ LD PK +  K + HS+V++ 
Sbjct: 264 QIIVAKLVSKMAELSYLAQEEFARENVTKPLVTCLSIDMVLDDPKLQLGKPSFHSVVEIN 323

Query: 323 KEMTEK-------STNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKL 375
           KE+  K       S++ +++SD SSRGG+     +K++E+E+ EVK ++++ CAEALW+L
Sbjct: 324 KELAGKNLNTSLNSSSTSSHSDSSSRGGN----QRKEKEVESSEVKLQLKVNCAEALWRL 379

Query: 376 SKG-------------------------------CLLSLWS----AESNAELRRSAFKTN 400
           SKG                               CL+++      AES  +LR +AFK  
Sbjct: 380 SKGSLMNSRKITETKGLLCLAKIIENEGGELQYNCLMTVMEVTAVAESKPDLRHAAFKIT 439

Query: 401 SPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDV 460
           SPA KAVLDQL R+IH +SD +LQ PAI+SIG LA+ FPAKE ++I  LV  + + ++DV
Sbjct: 440 SPAPKAVLDQLSRMIHRDSDPVLQVPAIKSIGSLARIFPAKESQIINLLVLQMKSMDMDV 499

Query: 461 ATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSA 520
           A EAVIAL KF  P+N+N   HSK++IEF GVPPLM+LLK +D+AQV GL+ LCYLALS 
Sbjct: 500 AIEAVIALGKFACPENYNCVAHSKSLIEFGGVPPLMKLLKQNDQAQVPGLILLCYLALSV 559

Query: 521 GNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAGSHP-HRQTYAP 576
           GNSK LEQA ALNA++G AR V   HP+L +L+A+AI+HLTLYQAG+H  HR +++P
Sbjct: 560 GNSKVLEQAHALNAMKGMARLVF-SHPDLHELYAKAIHHLTLYQAGAHHIHRHSFSP 615

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469721|ref|XP_004152567.1| PREDICTED: uncharacterized protein LOC101205472 [Cucumis sativus]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 321/596 (53%), Positives = 436/596 (73%), Gaps = 50/596 (8%)

Query: 25  ELSLPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRL-ATSSQPLYERPIR 83
           E + PILLAD++++ AQEA S +QEC +L KQV+++ +ML++ VRL  T++QPLYERPIR
Sbjct: 53  EFTPPILLADKILRLAQEAVSLRQECVDLAKQVDKIYRMLQATVRLITTTTQPLYERPIR 112

Query: 84  RVAADVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIFD 143
           R+ ADV+KNLDR+ + V +C+H G LR VFS+TT ADF+KV SLLESSIGDM+WLL+IFD
Sbjct: 113 RIVADVSKNLDRAWSFVSKCRHGGFLRQVFSMTTIADFRKVSSLLESSIGDMKWLLSIFD 172

Query: 144 SDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEE 203
           SD   + LPPIASNDP LA++W  I+TIQMG +++RV+AAN+L    R N+RN+KI++EE
Sbjct: 173 SDG-TVGLPPIASNDPTLAYIWPNIATIQMGSVRNRVEAANQLTLHTRGNDRNQKIVMEE 231

Query: 204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQ 263
           GG+ PLLKLLKE +SPDAQ AAAN L N+A+  + V  IV++ GVPIIV VL ++P++VQ
Sbjct: 232 GGVPPLLKLLKEYSSPDAQIAAANVLINVASVTDRVESIVNIPGVPIIVQVLNDSPMRVQ 291

Query: 264 VAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK 323
           + VA LV++MAEL  +AQEEF RENVT+ L++ L +D+ LD PK +  K + HS+V++ K
Sbjct: 292 IIVAKLVSKMAELSYLAQEEFARENVTKPLVTCLSIDMVLDDPKLQLGKPSFHSVVEINK 351

Query: 324 EMTEK-------STNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLS 376
           E+  K       S++ +++SD SSRGG+     +K++E+E+ EVK ++++ CAEALW+LS
Sbjct: 352 ELAGKNLNTSLNSSSTSSHSDSSSRGGN----QRKEKEVESSEVKLQLKVNCAEALWRLS 407

Query: 377 KG-------------------------------CLLSLWS----AESNAELRRSAFKTNS 401
           KG                               CL+++      AES  +LR +AFK  S
Sbjct: 408 KGSLMNSRKITETKGLLCLAKIIENEGGELQYNCLMTVMEVTAVAESKPDLRHAAFKITS 467

Query: 402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVA 461
           PA KAVLDQL R+IH +SD +LQ PAI+SIG LA+ FPAKE ++I  LV  + + ++DVA
Sbjct: 468 PAPKAVLDQLSRMIHRDSDPVLQVPAIKSIGSLARIFPAKESQIINLLVLQMKSMDMDVA 527

Query: 462 TEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAG 521
            EAVIAL KF  P+N+N   HSK++IEF GVPPLM+LLK +D+AQV GL+ LCYLALS G
Sbjct: 528 IEAVIALGKFACPENYNCVAHSKSLIEFGGVPPLMKLLKQNDQAQVPGLILLCYLALSVG 587

Query: 522 NSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAGSHP-HRQTYAP 576
           NSK LEQA ALNA++G AR V   HP+L +L+A+AI+HLTLYQAG+H  HR +++P
Sbjct: 588 NSKVLEQAHALNAMKGMARLVF-SHPDLHELYAKAIHHLTLYQAGAHHIHRHSFSP 642

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485695|ref|XP_003613135.1| hypothetical protein MTR_5g033190 [Medicago truncatula] gi|355514470|gb|AES96093.1| hypothetical protein MTR_5g033190 [Medicago truncatula]

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 322/617 (52%), Positives = 430/617 (69%), Gaps = 72/617 (11%)

Query: 18  KSQSLQEELSLPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLA-TSSQP 76
           +++ L+EELS PIL+A+R+  + +E +S K EC+E+ K VERL QMLR+ VR A T+  P
Sbjct: 6   EAKRLEEELSYPILVAERIRSATEETDSFKLECSEVWKHVERLLQMLRTLVRFAATAPPP 65

Query: 77  LYERPIRRVAADVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMR 136
           LYERP+RRVAA+ AKNL+R+LTL+R+CK   +L  V +I T ADF+KV   L++S+GDM+
Sbjct: 66  LYERPVRRVAAEAAKNLERALTLIRKCKRRSILHRVVTIVTAADFRKVLVYLDASVGDMK 125

Query: 137 WLLTIFDSDE------VNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLA 190
           WLL+I D D       +NLSLPPIASNDPIL+WVWSFI++IQMGQ+  +++A NELASLA
Sbjct: 126 WLLSILDVDGSGGGGGINLSLPPIASNDPILSWVWSFIASIQMGQLNDKIEATNELASLA 185

Query: 191 RDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPI 250
           +DN+RN+KIIVEEGG+ PLLKLLKEA+SP AQ AAA  L  +A D E +R IV+ +GVP 
Sbjct: 186 QDNDRNKKIIVEEGGVPPLLKLLKEASSPAAQIAAATCLCYLANDLERIRVIVNEVGVPA 245

Query: 251 IVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPES 310
           +V VL ++P++VQ   ANLVARMA+ D +AQE+F REN  R L++LL  D A+D      
Sbjct: 246 VVQVLADSPIRVQTLAANLVARMAKHDPVAQEDFARENAIRPLVTLLSFDTAVD------ 299

Query: 311 AKTTIHSLVQMKKEMTEKSTNVTNN-----------------SDGSSRGGHGQHYNKKDR 353
            +T+IHS+ Q+ KE+ +K+T+ +                   ++GSSRGG+     +K+R
Sbjct: 300 EQTSIHSIFQVNKELGKKTTDRSGTGSGSRQFANSYSSTYYYTEGSSRGGN----YRKER 355

Query: 354 ELETPEVKAKVRIACAEALWKLSKG-------------------------------CLLS 382
           E E P VK +++I+CAEALW L+ G                               CL++
Sbjct: 356 ENEDPAVKLQLKISCAEALWMLAAGSVSNSRKITETKGMLCLAKIVEKEQGELQRNCLMT 415

Query: 383 LW----SAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTF 438
           +     +AESNA+LRR AFKTNSP AKAV++QLLR++ E    ++Q PAI+SIG LA+TF
Sbjct: 416 IMEITAAAESNADLRRGAFKTNSPPAKAVVEQLLRILKEVDSPLMQIPAIKSIGSLARTF 475

Query: 439 PAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRL 498
           PA+E R+I PLVA LSNR+++VA EA +AL+KF SPDNF   EHSK IIEFD VP +M+L
Sbjct: 476 PARETRVIEPLVAQLSNRDINVADEAAVALTKFASPDNFLYVEHSKKIIEFDAVPAVMKL 535

Query: 499 LKISDRAQV-HGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAI 557
           L+ ++  Q+ H L  LCYLAL AG+S++LEQAR L ALEGA RT+LPQH  +RDL ++AI
Sbjct: 536 LRSNEVNQMHHALTLLCYLALHAGSSESLEQARVLLALEGADRTILPQH--IRDLVSKAI 593

Query: 558 YHLTLYQAGSHPHRQTY 574
            HL LY AGSH     Y
Sbjct: 594 GHLNLYHAGSHSQPLVY 610

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	576
TAIR|locus:2088832	615	ARO4 "AT3G26600" [Arabidopsis	0.604	0.565	0.508	5.9e-89
TAIR|locus:2156932	651	ARO2 "armadillo repeat only 2"	0.520	0.460	0.398	9.2e-86
TAIR|locus:2116850	664	ARO1 "AT4G34940" [Arabidopsis	0.529	0.459	0.375	5.1e-83
TAIR|locus:2135149	670	ARO3 "armadillo repeat only 3"	0.519	0.446	0.395	1.3e-82
CGD|CAL0000730	543	orf19.5682 [Candida albicans (	0.232	0.246	0.269	4.5e-05
SGD|S000005133	542	SRP1 "Karyopherin alpha homolo	0.166	0.177	0.288	7.5e-05
TAIR|locus:2173123	441	IMPA-8 "importin alpha isoform	0.189	0.247	0.294	9.9e-05
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.239	0.225	0.308	0.00021
UNIPROTKB|Q7Z5J8	1434	ANKAR "Ankyrin and armadillo r	0.345	0.138	0.235	0.00024
TAIR|locus:2056529	580	AT2G05810 "AT2G05810" [Arabido	0.354	0.351	0.253	0.00024

TAIR|locus:2088832 ARO4 "AT3G26600" [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 186/366 (50%), Positives = 263/366 (71%)

Query:    30 ILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVR-LATSSQPLYERPIRRVAAD 88
             +L A+R+  +  EAES K EC E+ KQV+RL+QMLR+ VR +++SSQ +Y+RPIRRV  D
Sbjct:    16 VLTAERLRVAVDEAESFKTECGEVGKQVDRLAQMLRTLVRFVSSSSQQVYDRPIRRVIVD 75

Query:    89 VAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIFDSDE-- 146
             V KNL+R   LVR+C+   ++R V +I   ADF+KV +LLESS GD++W+L++FDSD   
Sbjct:    76 VKKNLERGFALVRKCRRHNIIRRVCTIINAADFRKVINLLESSNGDVKWILSVFDSDGDG 135

Query:   147 -----VNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIV 201
                  + +SLPPIA+NDPIL WVWS +++IQMG++  ++DAAN+L SLA DN+RN+KIIV
Sbjct:   136 SFGGGIVISLPPIATNDPILPWVWSLVASIQMGKLVDKIDAANQLGSLAGDNDRNKKIIV 195

Query:   202 EEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVK 261
             +EGG+ PLL+LLKE++S + Q AAA AL  +A D++ VR IV+ LGVPIIV VLG++ V+
Sbjct:   196 DEGGVSPLLRLLKESSSAEGQIAAATALGLLACDEDKVRSIVNELGVPIIVQVLGDSSVR 255

Query:   262 VQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQM 321
             VQ+ VA LVARMAE D +AQ+EF R++V + L++LL +D+ +D     S   +IHSLVQM
Sbjct:   256 VQIKVATLVARMAEHDPVAQDEFARQSVIKPLVTLLSLDVFVD-DIHLSKHNSIHSLVQM 314

Query:   322 KKEMTEKSTNVTNNSDGSSR-------GGHGQHYN--KKDRELETPEVKAKVRIACAEAL 372
              KE+ +  ++       SS+       GG G      KK+R+ E PEVK ++++ CAEAL
Sbjct:   315 NKEVEKDPSSKLYRPLKSSKSNVYRDIGGSGSRTGNFKKERDNENPEVKHELKVNCAEAL 374

Query:   373 WKLSKG 378
             W L++G
Sbjct:   375 WMLARG 380

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2156932 ARO2 "armadillo repeat only 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
 Identities = 125/314 (39%), Positives = 183/314 (58%)

Query:    29 PILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLATSSQPLYERPIRRVAAD 88
             PI L+D+V+K+A EA S KQEC EL+ + E+L+ +LR   R   +S  LYERP RR+  D
Sbjct:    12 PIQLSDQVVKAADEASSFKQECGELKAKTEKLAGLLRQAAR---ASNDLYERPTRRIIDD 68

Query:    89 VAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIF----DS 144
               + L+++L+LV +C+  G+++ VF+I   A F+K+   LE+SIGD+ WLL +     D 
Sbjct:    69 TEQMLEKALSLVLKCRANGLMKRVFTIIPAAAFRKMSGQLENSIGDVSWLLRVSAPAEDR 128

Query:   145 DEVN-LSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEE 203
              +   L LPPIA+N+PIL  +W  I+ +  G ++ R DAA  L SLARDN+R  K+I+EE
Sbjct:   129 GDAGYLGLPPIAANEPILCLIWEQIAILYTGSLEDRSDAAASLVSLARDNDRYTKLIIEE 188

Query:   204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQ 263
             GG++PLLKLLKE   P+ Q  AA AL  +  D E+V  ++      +   VL E P+KVQ
Sbjct:   189 GGVVPLLKLLKEG-KPEGQENAARALGLLGRDPESVEHMIHGGACSVFGKVLKEGPMKVQ 247

Query:   264 VAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPK----PESAKTTIHSLV 319
               VA   + +       Q+ F + N  R L+  L  +   +  K      +  T+IH  V
Sbjct:   248 AVVAWATSELVSNHPKCQDVFAQHNAIRLLVGHLAFETVQEHSKYAIATNNKATSIHHAV 307

Query:   320 QMKKEMTEKSTNVT 333
              + KE    ST+ T
Sbjct:   308 ALAKE-NPNSTSAT 320

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2116850 ARO1 "AT4G34940" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 5.1e-83, Sum P(2) = 5.1e-83
 Identities = 119/317 (37%), Positives = 177/317 (55%)

Query:    29 PILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLATSSQPLYERPIRRVAAD 88
             PI LAD++ K++ EA S +QEC E++ + E+L+ +LR   R   +S  LYERP RR+  D
Sbjct:    12 PIQLADQITKASDEAYSFRQECLEVKAKTEKLAGLLRQAAR---ASNDLYERPTRRIIDD 68

Query:    89 VAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIF----DS 144
               + L ++L LV +C+  G+++ VF+I   A F+K+   LE+SIGD+ WLL +     D 
Sbjct:    69 TEQVLFKALALVEKCRATGLMKRVFTIIPAAAFRKITMQLENSIGDVSWLLRVSASGDDR 128

Query:   145 DEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEG 204
             D+  L LPPIA+N+PIL  +W  ++ +  G +  R DAA  L SLARDN+R  ++I+EEG
Sbjct:   129 DDEYLGLPPIAANEPILCLIWEQVAILFTGSLDDRSDAAASLVSLARDNDRYGRLIIEEG 188

Query:   205 GILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQV 264
             G+  LLKL KE    + Q  AA A+  +  D E+V  IV+     +   +L E  +KVQ 
Sbjct:   189 GVPSLLKLAKEGKM-EGQENAARAIGLLGRDPESVEQIVNAGVCQVFAKILKEGHMKVQT 247

Query:   265 AVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPE--SAKTTIHSL--VQ 320
              VA  V+ +A      Q+ F + N+ R L+S L  +   +  K    S K T+ S+  V 
Sbjct:   248 VVAWAVSELASNHPKCQDHFAQNNIIRFLVSHLAFETVQEHSKYAIVSNKQTLSSIHTVV 307

Query:   321 MKKEMTEKSTNVTNNSD 337
             M            N  D
Sbjct:   308 MASNTNPADKKENNEQD 324

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0030036 "actin cytoskeleton organization" evidence=RCA;IMP

GO:0090404 "pollen tube tip" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2135149 ARO3 "armadillo repeat only 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 524 (189.5 bits), Expect = 1.3e-82, Sum P(2) = 1.3e-82
 Identities = 125/316 (39%), Positives = 186/316 (58%)

Query:    29 PILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLATSSQPLYERPIRRVAAD 88
             PI LAD+V+K+  EA  +KQECA+++ + E+L+ +LR   R   +S  LYERP RR+  D
Sbjct:    12 PIQLADQVVKAGDEATINKQECADIKSKTEKLAALLRQAAR---ASSDLYERPTRRILDD 68

Query:    89 VAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIF-----D 143
                 L+++LT+V+RC+  G +  +F+I   A F+K+ S LE+S+GD+ WLL +      D
Sbjct:    69 TENVLEKALTMVQRCRDDGYIMRLFNIIPAAAFRKMISQLENSVGDVSWLLRVSTPAGND 128

Query:   144 SDEV--NLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIV 201
              DE    L LPPIA+N+PIL  +W  I+ +  G  + + DAA  LASLARDN+R  K+IV
Sbjct:   129 DDEGFGYLGLPPIAANEPILCLIWEQIAVLMTGSPEDKSDAAASLASLARDNDRYVKLIV 188

Query:   202 EEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGV-PIIVSVLGEAPV 260
             EEGG+ PLLKL+KE    D Q  AA  +  +  D E+V  ++  LGV  ++ S+L E  +
Sbjct:   189 EEGGVNPLLKLVKEGKI-DGQENAARTIGLLGRDPESVEHMIQ-LGVCSVLSSILKEGSM 246

Query:   261 KVQVAVANLVARMAELDSI-AQEEFVRENVTRSLISLLCMDIALDLPK---PESAKTTIH 316
             KVQ  VA  V+ +   +    QE F + NV R L+S L  +   +  K        T++H
Sbjct:   247 KVQAVVAWAVSELVSGNHAKCQELFAQNNVIRLLVSHLAFETVQEHSKYAVVAGRATSMH 306

Query:   317 SLVQMKKEMTEKSTNV 332
               V M  +++    N+
Sbjct:   307 HAVVMASKISSSKENL 322

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

CGD|CAL0000730 orf19.5682 [Candida albicans (taxid:5476)]

 Score = 98 (39.6 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
 Identities = 38/141 (26%), Positives = 68/141 (48%)

Query:   168 ISTIQMGQIKSRVDAANELAS-LARDNNRNRKIIVEEGGILPLLKLLKEAASPDA-QTAA 225
             +  IQ     S++ A  +    L+R++N    ++++ G I  L++ +KE   PD  Q  A
Sbjct:    91 LEMIQAPDFDSQLAATVKFRQILSREHNPPIDLVIQSGVIPTLVEFMKED-HPDMLQLEA 149

Query:   226 ANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEF 284
             A AL NIA+ D    R +V+   VP+ V +L    ++V+      +  +A  DS    ++
Sbjct:   150 AWALTNIASGDSSQTRVVVEANAVPLFVQLLYSQSLEVKEQAIWALGNVAG-DSSDNRDY 208

Query:   285 VRE-NVTRSLISLL-CMDIAL 303
             V   N    ++ L  C  ++L
Sbjct:   209 VLSCNAMEPVLQLFNCTKMSL 229

GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

SGD|S000005133 SRP1 "Karyopherin alpha homolog" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 95 (38.5 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
 Identities = 32/111 (28%), Positives = 63/111 (56%)

Query:   403 AAKAVLD-----QLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMI--GPLVAL--- 452
             A +AV+D     +L+ L+  ES  ++QTPA+R++G +      + + +I  G L AL   
Sbjct:   291 AIQAVIDVRIPKRLVELLSHES-TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 349

Query:   453 LSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD 503
             LS+   ++  EA   +S   +      +E  +A+I+ + +PPL++LL++++
Sbjct:   350 LSSPKENIKKEACWTISNITA----GNTEQIQAVIDANLIPPLVKLLEVAE 396

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=ISM

GO:0006612 "protein targeting to membrane" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006606 "protein import into nucleus" evidence=IEA;IMP

GO:0008565 "protein transporter activity" evidence=IEA;IDA

GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

TAIR|locus:2173123 IMPA-8 "importin alpha isoform 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 87 (35.7 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
 Identities = 35/119 (29%), Positives = 62/119 (52%)

Query:   407 VLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE--KRMIGPLVALLSNRNVDVATEA 464
             VL  LLRL+++++   + T A+R++ C  K  PA +  K  +  L  LL + + DV   A
Sbjct:   132 VLMPLLRLLYKDTTLRIATWALRNL-CRGKPHPAFDQVKPALPALEILLHSHDEDVLKNA 190

Query:   465 VIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKI-SDRAQVHGLVFLCYLALSAGN 522
              +AL            +  +++IE   VP L+++L++ S    V  L+ +   A++AGN
Sbjct:   191 CMALCHLSE----GSEDGIQSVIEAGFVPKLVQILQLPSPVVLVPALLTIG--AMTAGN 243

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 127 (49.8 bits), Expect = 0.00021, Sum P(3) = 0.00021
 Identities = 45/146 (30%), Positives = 69/146 (47%)

Query:   156 SNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKE 215
             S+D   A + S ++ ++ G    +  AA E+  LA+ N  NR I + E G +PLL  L  
Sbjct:   317 SSDYDHAGLVSLMNRLRSGNQDEQRAAAGEIRLLAKRNVNNR-ICIAEAGAIPLLVNLLS 375

Query:   216 AASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAE 275
             ++ P  Q  A  AL N++  +     IVD   +P IV VL    ++ +    N  A +  
Sbjct:   376 SSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETR---ENAAATLFS 432

Query:   276 LDSIAQEEFVRENVTRS---LISLLC 298
             L S+  E  V      +   LI+LLC
Sbjct:   433 L-SVVDENKVTIGAAGAIPPLINLLC 457

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

UNIPROTKB|Q7Z5J8 ANKAR "Ankyrin and armadillo repeat-containing protein" [Homo sapiens (taxid:9606)]

 Score = 109 (43.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 51/217 (23%), Positives = 107/217 (49%)

Query:    92 NLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESS-IGDMRWLLTIFDSDEVN-- 148
             NL +S  +  +CK  G+L +   I+T+     V +L+E+  I  +  LL + D  EV+  
Sbjct:   749 NLLKSSKIKLQCKTVGLLSN---ISTHKS--AVHALVEAGGIPSLINLL-VCDEPEVHSR 802

Query:   149 --LSLPPIAS--NDPILA---WVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIV 201
               + L  IA   N  ++A    + S I+ + +      V+  N +  L   N  N++ + 
Sbjct:   803 CAVILYDIAQCENKDVIAKYNGIPSLINLLNLNIENVLVNVMNCIRVLCIGNENNQRAVR 862

Query:   202 EEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG-VPIIVSVLGEAPV 260
             E  G+  L++ L  + S   +  ++ A+  +  D + ++  + + G +P +V++     +
Sbjct:   863 EHKGLPYLIRFLS-SDSDVLKAVSSAAIAEVGRDNKEIQDAIAMEGAIPPLVALFKGKQI 921

Query:   261 KVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297
              VQ+  A  V  +A  +++ Q+ F+ +++T+ L+ LL
Sbjct:   922 SVQMKGAMAVESLASHNALIQKAFLEKSLTKYLLKLL 958

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2056529 AT2G05810 "AT2G05810" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 56/221 (25%), Positives = 96/221 (43%)

Query:    62 QMLRSCV-RLATSSQPLYERP-------IRRVAADVAKNLDRSLTLVRRCKHAGVLRHVF 113
             Q+LRS +  L +S   L E P       +  +   +  NL R  +L  +C  A       
Sbjct:    49 QILRSKLFTLNSSLSSLSESPHWSQNPLLHTLLPSLLSNLQRLSSLSDQCSSASFSGGKL 108

Query:   114 SITTNADFKKVFSLLESSIGDMRWLL---TIFDSDEVNLSLPPIASN-DPILAWVWSFIS 169
              + ++ D     S L + I D+  LL    +   + + LSLPP  S+ D I  ++    +
Sbjct:   109 LMQSDLDIAS--SSLSTHISDLDLLLRSGVLHQQNAIVLSLPPPTSDKDDIAFFIRDLFT 166

Query:   170 TIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASP---DAQTAAA 226
              +Q+G  + +  +   L  L  DN ++ +II +EG +  L+ LL     P   +   AA 
Sbjct:   167 RLQIGGAEFKKKSLESLLQLLTDNEKSARIIAKEGNVGYLVTLLDLHHHPLIREHALAAV 226

Query:   227 NALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVA 267
             + L + + D     F    LG  + +   G +P K + A+A
Sbjct:   227 SLLTSSSADSRKTVFEQGGLGPLLRLLETGSSPFKTRAAIA 267

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	576
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-10
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-05
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	3e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	6e-04
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	0.002

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAA 226
            +S +       + +AA  L++L+  NN N + +VE GG+  L++LLK     +   AA 
Sbjct: 12  LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAAL 70

Query: 227 NALFNIATDQETVR-FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAE 275
            AL N+A   E  +  +++  GVP +V++L  +   +Q      ++ +A 
Sbjct: 71  WALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 2/99 (2%)

Query: 200 IVEEGGILPLLKLLKEAASPDAQTAAANALFNIA-TDQETVRFIVDVLGVPIIVSVLGEA 258
           +++ GG+  L+ LL  +   + Q  AA AL N++  + + ++ +V+  G+P +V +L   
Sbjct: 3   VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 259 PVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297
             +V  A    +  +A      +   +       L++LL
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL 100

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGG-ILPLLKLLKEAASPDAQTAA 225
            +S ++ G + ++V+AA  L  L ++ +   K+++  GG I PLL LLK + S +AQ AA
Sbjct: 63  LVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLL--GGCIPPLLSLLK-SGSAEAQKAA 119

Query: 226 ANALFNIAT 234
           A A++ +++
Sbjct: 120 AEAIYAVSS 128

Length = 2102

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 15/111 (13%)

Query: 403 AAKAVLD-----QLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMI--GPLVA---L 452
             +AVLD     +L+ L+  ES A +QTPA+RS+G +      + + +I  G L A   L
Sbjct: 277 KIQAVLDVGIPGRLVELLSHES-AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSL 335

Query: 453 LSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD 503
           LS+   ++  EA   +S   +      +E  +A+I+ + +PPL+ LL  ++
Sbjct: 336 LSSPKENIRKEACWTISNITA----GNTEQIQAVIDANLIPPLIHLLSSAE 382

Length = 526

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 193 NNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT 234
           +  N++ ++E G + PL++LL      + Q  AA AL N+A 
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSS-PDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 407 VLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIG-----PLVALLSNRNVDVA 461
            L  L+ L+   SD  +Q  A  ++  L+       + ++       LV LL + + +V 
Sbjct: 8   GLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVV 66

Query: 462 TEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD 503
             A+ AL            ++   ++E  GVP L+ LL  S+
Sbjct: 67  KAALWALRNLA----AGPEDNKLIVLEAGGVPKLVNLLDSSN 104

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	576
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.92
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.92
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.86
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.8
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.73
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.69
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.59
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.41
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.35
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.28
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.24
PRK09687	280	putative lyase; Provisional	99.23
PRK09687	280	putative lyase; Provisional	99.22
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.14
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.09
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.05
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.93
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.86
KOG4199	461	consensus Uncharacterized conserved protein [Funct	98.84
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.8
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.74
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	98.73
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	98.61
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.59
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	98.58
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.55
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.41
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.32
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.31
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.29
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.29
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.24
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.14
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.11
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.97
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.91
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	97.9
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	97.88
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.87
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	97.85
TIGR02270	410	conserved hypothetical protein. Members are found	97.74
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	97.73
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.72
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.69
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.58
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.55
TIGR02270	410	conserved hypothetical protein. Members are found	97.47
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.47
PTZ00429	746	beta-adaptin; Provisional	97.45
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.43
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.41
PTZ00429	746	beta-adaptin; Provisional	97.37
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.35
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.27
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.26
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.21
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.2
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.18
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.06
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	97.04
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.84
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.8
PF05536	543	Neurochondrin: Neurochondrin	96.46
KOG4646	173	consensus Uncharacterized conserved protein, conta	96.43
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.42
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.24
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.11
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.01
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	95.86
KOG2973	353	consensus Uncharacterized conserved protein [Funct	95.84
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	95.83
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.74
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.35
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.25
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.12
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	95.09
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	95.07
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	94.75
PF05536	543	Neurochondrin: Neurochondrin	94.67
KOG3678	832	consensus SARM protein (with sterile alpha and arm	94.56
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	94.19
KOG1824	1233	consensus TATA-binding protein-interacting protein	94.07
KOG1242	569	consensus Protein containing adaptin N-terminal re	93.95
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	93.93
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	93.78
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	93.49
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	93.47
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	93.3
COG5096	757	Vesicle coat complex, various subunits [Intracellu	93.24
PF05004	309	IFRD: Interferon-related developmental regulator (	93.2
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.94
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	92.67
KOG2259	823	consensus Uncharacterized conserved protein [Funct	92.58
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.17
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	91.96
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	91.44
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	91.43
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	90.65
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	90.33
PF08045	257	CDC14: Cell division control protein 14, SIN compo	89.69
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	89.66
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	89.61
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	89.55
COG5369	743	Uncharacterized conserved protein [Function unknow	89.37
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	88.8
KOG0567	289	consensus HEAT repeat-containing protein [General	88.76
KOG1824	1233	consensus TATA-binding protein-interacting protein	88.64
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	88.2
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	88.15
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	87.85
KOG2973	353	consensus Uncharacterized conserved protein [Funct	87.49
KOG1242	569	consensus Protein containing adaptin N-terminal re	87.03
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	86.91
PF05659	147	RPW8: Arabidopsis broad-spectrum mildew resistance	86.54
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	85.66
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	85.58
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	84.84
COG5096	757	Vesicle coat complex, various subunits [Intracellu	84.44
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	83.46
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	82.67
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	81.78
COG5369	743	Uncharacterized conserved protein [Function unknow	81.38
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	81.02
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	80.94
PF08045	257	CDC14: Cell division control protein 14, SIN compo	80.8
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	80.22

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.1e-45  Score=372.08  Aligned_cols=363  Identities=20%  Similarity=0.231  Sum_probs=295.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHh-hcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHH
Q 041643          167 FISTIQMGQIKSRVDAANELASLA-RDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVD  244 (576)
Q Consensus       167 li~~L~~G~~e~k~~AA~~L~~La-~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~  244 (576)
                      +.+.|.+.+.|++..|......+- +...+..+.++++|.||.+|++|++....-.|++|||||+|+++. +.+++.+|+
T Consensus        76 lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd  155 (526)
T COG5064          76 LTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVD  155 (526)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEe
Confidence            367889999999999998876544 444456788889999999999996654378999999999999995 566777889


Q ss_pred             cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643          245 VLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE  324 (576)
Q Consensus       245 ~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~  324 (576)
                      +||||.|+++|.++..+|++++.|||+|+|++++.+|+.+.+.|++.||+.+|.+..         ..   -++++..+|
T Consensus       156 ~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~---------~~---ismlRn~TW  223 (526)
T COG5064         156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA---------IH---ISMLRNATW  223 (526)
T ss_pred             CCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc---------ch---HHHHHHhHH
Confidence            999999999999999999999999999999999999999999999999999997531         01   134677777


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc-hhcccchHHHHhhhccCchh
Q 041643          325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL-WSAESNAELRRSAFKTNSPA  403 (576)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I-avae~~~~lrr~a~k~~s~a  403 (576)
                      +-++.|+|+++.|.++..+..+|.+.|.....||+|.    .+|+||+.||++|..+.| +|.+.+              
T Consensus       224 tLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evl----vDA~WAiSYlsDg~~E~i~avld~g--------------  285 (526)
T COG5064         224 TLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVL----VDACWAISYLSDGPNEKIQAVLDVG--------------  285 (526)
T ss_pred             HHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHH----HHHHHHHHHhccCcHHHHHHHHhcC--------------
Confidence            7777888998899887666677777788889999874    789999999999987665 444432              


Q ss_pred             HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-------------------------------------------
Q 041643          404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-------------------------------------------  440 (576)
Q Consensus       404 ~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-------------------------------------------  440 (576)
                         ....|+++|.+++ ..+|+|++|++||+++....                                           
T Consensus       286 ---~~~RLvElLs~~s-a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteq  361 (526)
T COG5064         286 ---IPGRLVELLSHES-AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQ  361 (526)
T ss_pred             ---CcHHHHHHhcCcc-ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHH
Confidence               2345777777654 89999999999999873210                                           


Q ss_pred             ----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHH
Q 041643          441 ----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCY  515 (576)
Q Consensus       441 ----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~  515 (576)
                          .+.+.|||||++|.+.+..+++||+||++|..++++. .+++.+++++.|.|+|||.||...+. +-..++.++-|
T Consensus       362 iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~-~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~en  440 (526)
T COG5064         362 IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN-RPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIEN  440 (526)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC-CchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHH
Confidence                1234689999999999999999999999999988875 57999999999999999999998776 43334666667


Q ss_pred             HhcccCchHHHHhccch---hh-Hh---hhhcccCCCCCcHHHHHHHHHHHHHhhcC
Q 041643          516 LALSAGNSKALEQARAL---NA-LE---GAARTVLPQHPELRDLFAQAIYHLTLYQA  565 (576)
Q Consensus       516 lal~~~~~~~l~~~~~l---~~-Le---~~~~~~~~q~~~~~~l~~~a~~~l~~y~~  565 (576)
                      + +++|...+...-.-+   .+ .|   |++.++.+|+..++++|.||++|++.||+
T Consensus       441 i-Lk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFg  496 (526)
T COG5064         441 I-LKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFG  496 (526)
T ss_pred             H-HhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcc
Confidence            7 777877665532222   22 23   88889999999999999999999999996

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.6e-44  Score=381.81  Aligned_cols=363  Identities=20%  Similarity=0.212  Sum_probs=283.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhc-CcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHH
Q 041643          165 WSFISTIQMGQIKSRVDAANELASLARD-NNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFI  242 (576)
Q Consensus       165 ~~li~~L~~G~~e~k~~AA~~L~~La~~-~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~i  242 (576)
                      ..+++.+.+++.+.+..+...+..|.+. ..+....++..|.||.||++|+.++++..|++|||||+|+|+ ++++++.+
T Consensus        69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v  148 (514)
T KOG0166|consen   69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV  148 (514)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence            3447899999998888888887665533 224456666779999999999877659999999999999999 56888999


Q ss_pred             HHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhh
Q 041643          243 VDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK  322 (576)
Q Consensus       243 v~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~  322 (576)
                      +++|+||.|+++|.+++..++++|+|||+|+|++++.+|+.+...|+++||+.++...+    .  +.   -++++.|+-
T Consensus       149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~----~--~~---~lRn~tW~L  219 (514)
T KOG0166|consen  149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD----K--LS---MLRNATWTL  219 (514)
T ss_pred             ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcccc----c--hH---HHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999997542    0  00   123333333


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc-hhcccchHHHHhhhccCc
Q 041643          323 KEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL-WSAESNAELRRSAFKTNS  401 (576)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I-avae~~~~lrr~a~k~~s  401 (576)
                      .    +.+.|+.+.|.+...+..+|.+.+...+.|++|.    .+|+|||.||++|..+.| +|.+.             
T Consensus       220 s----Nlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl----~Da~WAlsyLsdg~ne~iq~vi~~-------------  278 (514)
T KOG0166|consen  220 S----NLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVL----TDACWALSYLTDGSNEKIQMVIDA-------------  278 (514)
T ss_pred             H----HHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHHhcCChHHHHHHHHc-------------
Confidence            3    3344554444443333345544566778898874    899999999999987765 44443             


Q ss_pred             hhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc------------------------h-----------------
Q 041643          402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP------------------------A-----------------  440 (576)
Q Consensus       402 ~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~------------------------~-----------------  440 (576)
                          +++++|+.+|.+.+ ..+++||+|++||+++...                        .                 
T Consensus       279 ----gvv~~LV~lL~~~~-~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~  353 (514)
T KOG0166|consen  279 ----GVVPRLVDLLGHSS-PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGN  353 (514)
T ss_pred             ----cchHHHHHHHcCCC-cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC
Confidence                47888999998755 7889999999999887311                        0                 


Q ss_pred             -------hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHH
Q 041643          441 -------KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVF  512 (576)
Q Consensus       441 -------~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~  512 (576)
                             .+++++|+|+++|+++++++++||+|||+|++++++   +++.+++++.|+|+|||.||...|. +...++.+
T Consensus       354 ~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~---~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~  430 (514)
T KOG0166|consen  354 QEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT---PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDG  430 (514)
T ss_pred             HHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC---HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHH
Confidence                   134678999999999999999999999999999886   7999999999999999999987776 65557777


Q ss_pred             HHHHhcccCchHHHHh-ccchhhHh---hhhcccCCCCCcHHHHHHHHHHHHHhhcCC
Q 041643          513 LCYLALSAGNSKALEQ-ARALNALE---GAARTVLPQHPELRDLFAQAIYHLTLYQAG  566 (576)
Q Consensus       513 L~~lal~~~~~~~l~~-~~~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~  566 (576)
                      |.+| +.++.....-+ +.+-..+|   |+++++.+|.|++++||++|+.|++.||+.
T Consensus       431 l~ni-l~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~  487 (514)
T KOG0166|consen  431 LENI-LKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSE  487 (514)
T ss_pred             HHHH-HHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence            7777 44444333222 23233344   788888889999999999999999999994

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=6.7e-34  Score=342.87  Aligned_cols=434  Identities=16%  Similarity=0.150  Sum_probs=302.8

Q ss_pred             HHHHHHHHHHHHHchhcCccchhhhccccccHHHHHHHHHhhh-----cchHHHhhhcccCc------cccCCCCCCCcc
Q 041643           90 AKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSI-----GDMRWLLTIFDSDE------VNLSLPPIASND  158 (576)
Q Consensus        90 ~~t~~~a~~~~~~C~~~g~~~r~~~i~~~~~l~~l~~~L~~~~-----~~~~~ll~~s~~~~------~~~~lp~ia~~~  158 (576)
                      .+...++...++...+.+...|.+..-..|.++.|+..|.+..     ..+..+.+++.++.      ..+.+||+    
T Consensus        29 ~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppL----  104 (2102)
T PLN03200         29 PQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPL----  104 (2102)
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHH----
Confidence            4556667778888888887777665446899999999995321     22557777876641      13456665    


Q ss_pred             hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC--ccc----------------------------------------
Q 041643          159 PILAWVWSFISTIQMGQIKSRVDAANELASLARDN--NRN----------------------------------------  196 (576)
Q Consensus       159 ~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~--~~~----------------------------------------  196 (576)
                               +.+|++|+.+.|++||.+|++|+.++  +.+                                        
T Consensus       105 ---------V~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs  175 (2102)
T PLN03200        105 ---------LSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLC  175 (2102)
T ss_pred             ---------HHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHh
Confidence                     78888888888888888888887653  222                                        


Q ss_pred             ------HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHhhcCCC-hhHHHHHHH
Q 041643          197 ------RKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPIIVSVLGEAP-VKVQVAVAN  268 (576)
Q Consensus       197 ------~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~LV~lL~s~~-~~vq~~Aa~  268 (576)
                            ++.|++.|+||+|+++|++++ +..|++|+++|.+++.+ ++.+..|+++|+||.||++|++++ ..+|++|+|
T Consensus       176 ~~~en~~~~IIeaGaVp~LV~LLsS~d-~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~  254 (2102)
T PLN03200        176 GSTDGFWSATLEAGGVDILVKLLSSGN-SDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAG  254 (2102)
T ss_pred             cCccchHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHH
Confidence                  234578899999999999888 99999999999999875 678999999999999999998754 689999999


Q ss_pred             HHHHHhcCChHHHHHHHhcCCchhHHHhhccccc---cC-CC----cchhhhhHHHHHHhhhcc-----------c----
Q 041643          269 LVARMAELDSIAQEEFVRENVTRSLISLLCMDIA---LD-LP----KPESAKTTIHSLVQMKKE-----------M----  325 (576)
Q Consensus       269 aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~---~~-~~----~~i~~~~si~~~v~~~~~-----------~----  325 (576)
                      +|.||+++++++|+.+.+.|+||+|++++.+...   +. +.    ....|  ++.++-.....           .    
T Consensus       255 AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~Avw--ALsNIcgg~~~ll~~L~~ll~s~rd~~  332 (2102)
T PLN03200        255 ALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMG--ALANICGGMSALILYLGELSESPRSPA  332 (2102)
T ss_pred             HHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHH--HHHHHhCCchhhHHHHHHhhcccchHH
Confidence            9999999999999999999999999999975421   00 00    01111  22211110000           0    


Q ss_pred             ---------ccc---c--------------------cccCCCCCCCCC------------C---------CCCCCCcccc
Q 041643          326 ---------TEK---S--------------------TNVTNNSDGSSR------------G---------GHGQHYNKKD  352 (576)
Q Consensus       326 ---------~~~---~--------------------~~~~~~~~~~~~------------~---------~~g~~~~~~~  352 (576)
                               .+.   .                    +.+.+..|....            +         .++++.+...
T Consensus       333 ~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~L  412 (2102)
T PLN03200        333 PIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGL  412 (2102)
T ss_pred             HHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhh
Confidence                     000   0                    000000000000            0         0000000000


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHH
Q 041643          353 RELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIG  432 (576)
Q Consensus       353 ~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLg  432 (576)
                      ....+.    ++|.+++++||+|++++.+          .+++..      ..++++.|+++|.+++ +.+|.+|+++|+
T Consensus       413 L~~~~~----evQ~~Av~aL~~L~~~~~e----------~~~aIi------~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~  471 (2102)
T PLN03200        413 ITMATA----DVQEELIRALSSLCCGKGG----------LWEALG------GREGVQLLISLLGLSS-EQQQEYAVALLA  471 (2102)
T ss_pred             hccCCH----HHHHHHHHHHHHHhCCCHH----------HHHHHH------HcCcHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence            111223    4578999999999988653          333222      2357899999999865 899999999999


Q ss_pred             HHhcCCch-h----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HH
Q 041643          433 CLAKTFPA-K----EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQ  506 (576)
Q Consensus       433 nLa~~~~~-~----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq  506 (576)
                      ||+..... +    +.|+||+|+++|++++.+++++|+|+|+|++.+.    .+.++.|.+.|++++|+++|++++. +|
T Consensus       472 nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~----~qir~iV~~aGAIppLV~LL~sgd~~~q  547 (2102)
T PLN03200        472 ILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS----EDIRACVESAGAVPALLWLLKNGGPKGQ  547 (2102)
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc----HHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence            99975543 2    4689999999999999999999999999998742    3445556689999999999999987 89


Q ss_pred             HHHHHHHHHHhcccCchHHH---------------------------------------HhccchhhHhhhhcccCCCCC
Q 041643          507 VHGLVFLCYLALSAGNSKAL---------------------------------------EQARALNALEGAARTVLPQHP  547 (576)
Q Consensus       507 ~~A~~~L~~lal~~~~~~~l---------------------------------------~~~~~l~~Le~~~~~~~~q~~  547 (576)
                      ..|+++|++++.+..+ +.+                                       ..+|+++      ....+|.+
T Consensus       548 ~~Aa~AL~nLi~~~d~-~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~------~Lv~LL~s  620 (2102)
T PLN03200        548 EIAAKTLTKLVRTADA-ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALR------TLIQLLSS  620 (2102)
T ss_pred             HHHHHHHHHHHhccch-hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHH------HHHHHHcC
Confidence            9999999999643221 110                                       0123333      44445678


Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCCC
Q 041643          548 ELRDLFAQAIYHLTLYQAGSHPHR  571 (576)
Q Consensus       548 ~~~~l~~~a~~~l~~y~~~~~~~~  571 (576)
                      ..++++++|...|..|++|.+.+.
T Consensus       621 gs~~ikk~Aa~iLsnL~a~~~d~~  644 (2102)
T PLN03200        621 SKEETQEKAASVLADIFSSRQDLC  644 (2102)
T ss_pred             CCHHHHHHHHHHHHHHhcCChHHH
Confidence            889999999999999999876643

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=5.6e-31  Score=317.77  Aligned_cols=351  Identities=18%  Similarity=0.156  Sum_probs=270.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHH
Q 041643          165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIV  243 (576)
Q Consensus       165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv  243 (576)
                      ..+|.+|.+++.+.|.+++.+|.+|+.+++++++.|++.|+||+||++|++++ ...|+.|+|+|.||+.. .+++..|+
T Consensus       407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIi  485 (2102)
T PLN03200        407 KVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAIT  485 (2102)
T ss_pred             hhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34688899999999999999999999888899999999999999999999998 99999999999999984 56888999


Q ss_pred             HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhc
Q 041643          244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK  323 (576)
Q Consensus       244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~  323 (576)
                      ++|+||+|+++|++++.++|++|+|+|+|++.++++.|..+.++|+||+|+++|++++..  . ......++.++.....
T Consensus       486 eaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~--~-q~~Aa~AL~nLi~~~d  562 (2102)
T PLN03200        486 AAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPK--G-QEIAAKTLTKLVRTAD  562 (2102)
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHH--H-HHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999998888999999999999999999877410  0 0001113333322111


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchh
Q 041643          324 EMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPA  403 (576)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a  403 (576)
                      ..                   .++.+......+|+.+    +..+.++|.++.....       .+ +.++.+.     .
T Consensus       563 ~~-------------------~I~~Lv~LLlsdd~~~----~~~aL~vLgnIlsl~~-------~~-d~~~~g~-----~  606 (2102)
T PLN03200        563 AA-------------------TISQLTALLLGDLPES----KVHVLDVLGHVLSVAS-------LE-DLVREGS-----A  606 (2102)
T ss_pred             hh-------------------HHHHHHHHhcCCChhH----HHHHHHHHHHHHhhcc-------hh-HHHHHhh-----h
Confidence            10                   0011001122344443    3456666666532111       11 1111111     0


Q ss_pred             HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCC
Q 041643          404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFN  478 (576)
Q Consensus       404 ~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~  478 (576)
                      ..++++.|++++++++ +..+..|+.+|+|++.+.++.     ..++||||+.+|++++++++++|||||+|++.+++  
T Consensus       607 ~~ggL~~Lv~LL~sgs-~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~--  683 (2102)
T PLN03200        607 ANDALRTLIQLLSSSK-EETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK--  683 (2102)
T ss_pred             ccccHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC--
Confidence            1367899999999875 899999999999999765442     45899999999999999999999999999997553  


Q ss_pred             CHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHhccchhhHhhhhcccCCCCCcHHHHHHHHH
Q 041643          479 RSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAI  557 (576)
Q Consensus       479 ~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~  557 (576)
                       .+++.++++.|++|||++||+.++. +...|+.+|.+++.+.....++.++|++++|..+-|..   .++.++-...|+
T Consensus       684 -~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G---~~~~k~~Aa~AL  759 (2102)
T PLN03200        684 -ENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG---TLEGKRNAARAL  759 (2102)
T ss_pred             -HHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC---ChHHHHHHHHHH
Confidence             5777889999999999999998876 77889999999998888888899999999997554444   355666666666


Q ss_pred             HHHHh
Q 041643          558 YHLTL  562 (576)
Q Consensus       558 ~~l~~  562 (576)
                      ..|-.
T Consensus       760 ~~L~~  764 (2102)
T PLN03200        760 AQLLK  764 (2102)
T ss_pred             HHHHh
Confidence            66644

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.6e-24  Score=217.00  Aligned_cols=299  Identities=21%  Similarity=0.268  Sum_probs=243.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 041643          168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG  247 (576)
Q Consensus       168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga  247 (576)
                      +-.+.+.+.+.+.+|..+|.||+.- +.|+..|...|++.||.+|-++.+ ...|.+|..+|.||+...++|+.+|.+|+
T Consensus       132 i~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs~EnRr~LV~aG~  209 (550)
T KOG4224|consen  132 ILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHSRENRRVLVHAGG  209 (550)
T ss_pred             HHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhhhhhhhhhhccCC
Confidence            4555677889999999999999997 789999999999999999888888 99999999999999999999999999999


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcC--CchhHHHhhccccccCCCcchhhhhHHHHHHhhhccc
Q 041643          248 VPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVREN--VTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEM  325 (576)
Q Consensus       248 vp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g--~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~  325 (576)
                      +|.||.+|++++.++|+.+..+++|++- +...|..+++.|  .||.||+|++++.                        
T Consensus       210 lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s------------------------  264 (550)
T KOG4224|consen  210 LPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGS------------------------  264 (550)
T ss_pred             chhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCC------------------------
Confidence            9999999999999999999999999995 578899999988  9999999996541                        


Q ss_pred             cccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHH
Q 041643          326 TEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAK  405 (576)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~  405 (576)
                                                      +    .+|-.|+.||.+|+.....++.+.++                 
T Consensus       265 --------------------------------~----kvkcqA~lALrnlasdt~Yq~eiv~a-----------------  291 (550)
T KOG4224|consen  265 --------------------------------D----KVKCQAGLALRNLASDTEYQREIVEA-----------------  291 (550)
T ss_pred             --------------------------------h----HHHHHHHHHHhhhcccchhhhHHHhc-----------------
Confidence                                            1    14567999999999765554444443                 


Q ss_pred             HHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch----hhhCcHHHHHHhhcCCCH-HHHHHHHHHHHhhcCCCCCCCH
Q 041643          406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA----KEKRMIGPLVALLSNRNV-DVATEAVIALSKFVSPDNFNRS  480 (576)
Q Consensus       406 ~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~----~~~~~I~~LV~LL~~~~~-~V~~eAa~AL~nla~~~n~~~~  480 (576)
                      +.++.|+++|++.- -.+....+-+|.|++-..-+    .+.|++.|||++|+.++. ++|..|.-+|.|+|...    .
T Consensus       292 g~lP~lv~Llqs~~-~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass----e  366 (550)
T KOG4224|consen  292 GSLPLLVELLQSPM-GPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS----E  366 (550)
T ss_pred             CCchHHHHHHhCcc-hhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh----h
Confidence            35789999997644 33344556678888753322    367899999999997755 49999999999998532    3


Q ss_pred             HHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHhccchhhHh--hhhcccCCCCCcHHH
Q 041643          481 EHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQARALNALE--GAARTVLPQHPELRD  551 (576)
Q Consensus       481 ~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le--~~~~~~~~q~~~~~~  551 (576)
                      .+++.|.+.|+||.|..|+..+.. +|..--.++..++++..+.+.+...|+++.|-  --++.+.+|...-..
T Consensus       367 ~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaA  440 (550)
T KOG4224|consen  367 HNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAA  440 (550)
T ss_pred             hhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHH
Confidence            567899999999999999998876 88764445567788888899999999999985  333555566654333

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=9.6e-24  Score=215.32  Aligned_cols=316  Identities=20%  Similarity=0.266  Sum_probs=248.4

Q ss_pred             hccccccHHHHHHHHHhhhcc-------hHHHhhhcccC----ccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHH
Q 041643          114 SITTNADFKKVFSLLESSIGD-------MRWLLTIFDSD----EVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDA  182 (576)
Q Consensus       114 ~i~~~~~l~~l~~~L~~~~~~-------~~~ll~~s~~~----~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~A  182 (576)
                      .|+.-.+++.|+.+.-+..-.       +-|-+-..+.+    ...+++.|+             +.+-++.+...+.+|
T Consensus       121 liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pl-------------trLakskdirvqrna  187 (550)
T KOG4224|consen  121 LIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPL-------------TRLAKSKDIRVQRNA  187 (550)
T ss_pred             EEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhh-------------HhhcccchhhHHHHH
Confidence            577889999999998542221       22322222222    223344443             444456688889999


Q ss_pred             HHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcC--CHHHHHHhhcCCCh
Q 041643          183 ANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVL--GVPIIVSVLGEAPV  260 (576)
Q Consensus       183 A~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G--avp~LV~lL~s~~~  260 (576)
                      ...|.++... .+||+.++.+||+|-||.+|++++ ++.|+.+..|+.|++-+..+|+.++++|  .||.||+|+.++++
T Consensus       188 tgaLlnmThs-~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~  265 (550)
T KOG4224|consen  188 TGALLNMTHS-RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSD  265 (550)
T ss_pred             HHHHHHhhhh-hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCCh
Confidence            9999999875 899999999999999999999999 9999999999999999999999999999  99999999999999


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCC
Q 041643          261 KVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSS  340 (576)
Q Consensus       261 ~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~  340 (576)
                      ++|.+|..+|.|||++ .+++..|.+.|++|.||+||+++..                                      
T Consensus       266 kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~--------------------------------------  306 (550)
T KOG4224|consen  266 KVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMG--------------------------------------  306 (550)
T ss_pred             HHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcch--------------------------------------
Confidence            9999999999999975 6888899999999999999965310                                      


Q ss_pred             CCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCC
Q 041643          341 RGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESD  420 (576)
Q Consensus       341 ~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~  420 (576)
                            |           -+     ..-..++.+++-..-+-.-++|                 .|++.+|+++|+-+|+
T Consensus       307 ------p-----------li-----lasVaCIrnisihplNe~lI~d-----------------agfl~pLVrlL~~~dn  347 (550)
T KOG4224|consen  307 ------P-----------LI-----LASVACIRNISIHPLNEVLIAD-----------------AGFLRPLVRLLRAGDN  347 (550)
T ss_pred             ------h-----------HH-----HHHHHHHhhcccccCcccceec-----------------ccchhHHHHHHhcCCc
Confidence                  0           00     1223455555543211112222                 2568899999999998


Q ss_pred             hhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhH
Q 041643          421 AMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPL  495 (576)
Q Consensus       421 ~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~L  495 (576)
                      +++|..|+.+|.|||...+-     ++.|.||.|..|+..+...+|.+-..+++.++-.+     +.+.++.+.|.++.|
T Consensus       348 EeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d-----~~k~~lld~gi~~iL  422 (550)
T KOG4224|consen  348 EEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND-----NDKEALLDSGIIPIL  422 (550)
T ss_pred             hhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc-----ccHHHHhhcCCccee
Confidence            99999999999999974432     36689999999999999999999888888888655     458899999999999


Q ss_pred             HHhhccChh-HHHHHHHHHHHHhcccCchHHHH
Q 041643          496 MRLLKISDR-AQVHGLVFLCYLALSAGNSKALE  527 (576)
Q Consensus       496 v~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~  527 (576)
                      +-++.+.++ ++-+|+.+|.|++.++.+-.++.
T Consensus       423 Ip~t~s~s~Ev~gNaAaAL~Nlss~v~~Yarvi  455 (550)
T KOG4224|consen  423 IPWTGSESEEVRGNAAAALINLSSDVEHYARVI  455 (550)
T ss_pred             ecccCccchhhcccHHHHHHhhhhhhHHHHHHH
Confidence            999988766 88889999999988776654443

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=3.1e-20  Score=200.66  Aligned_cols=358  Identities=16%  Similarity=0.194  Sum_probs=247.6

Q ss_pred             ccccccHHHHHHHHHhhhc-----chHHHhh-hcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041643          115 ITTNADFKKVFSLLESSIG-----DMRWLLT-IFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELAS  188 (576)
Q Consensus       115 i~~~~~l~~l~~~L~~~~~-----~~~~ll~-~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~  188 (576)
                      .+..|.++.++.-|+....     +..|-+. +...+...-.  -++..+++..    ++.+|++.+.+.+++|.++|+|
T Consensus       105 vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~--~vv~agavp~----fi~Ll~s~~~~v~eQavWALgN  178 (514)
T KOG0166|consen  105 VIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK--VVVDAGAVPI----FIQLLSSPSADVREQAVWALGN  178 (514)
T ss_pred             HHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc--ccccCCchHH----HHHHhcCCcHHHHHHHHHHHhc
Confidence            3456999999999974321     3567664 3332210000  0111222222    4899999999999999999999


Q ss_pred             HhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCc-hHHHHHHcCCHHHHHHhhcCCChhHHHHHH
Q 041643          189 LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE-TVRFIVDVLGVPIIVSVLGEAPVKVQVAVA  267 (576)
Q Consensus       189 La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~-~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa  267 (576)
                      ++.+++..|..+++.|+++||+.++...+......+++|+|.||+++.. .-..-.-..++|.|..+|.+.++++...|+
T Consensus       179 Iagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~  258 (514)
T KOG0166|consen  179 IAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDAC  258 (514)
T ss_pred             cccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            9999999999999999999999999887734788999999999999763 222233356899999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCC
Q 041643          268 NLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQH  347 (576)
Q Consensus       268 ~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~  347 (576)
                      |||++|+.+.++.-+.+.+.|++|.||.+|......   ...+.-+++.+++......+.           ...+.|+++
T Consensus       259 WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~---v~~PaLRaiGNIvtG~d~QTq-----------~vi~~~~L~  324 (514)
T KOG0166|consen  259 WALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPK---VVTPALRAIGNIVTGSDEQTQ-----------VVINSGALP  324 (514)
T ss_pred             HHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcc---cccHHHhhccceeeccHHHHH-----------HHHhcChHH
Confidence            999999988888888999999999999999754210   011111222222211111100           000112333


Q ss_pred             CcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc-hhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHH
Q 041643          348 YNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL-WSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTP  426 (576)
Q Consensus       348 ~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I-avae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~  426 (576)
                      .+.... ...|+-  .+|..|+|++.|++.|+.+.| +|+++                 ++++.|+.++++++ .+++..
T Consensus       325 ~l~~ll-~~s~~~--~ikkEAcW~iSNItAG~~~qiqaVida-----------------~l~p~Li~~l~~~e-f~~rKE  383 (514)
T KOG0166|consen  325 VLSNLL-SSSPKE--SIKKEACWTISNITAGNQEQIQAVIDA-----------------NLIPVLINLLQTAE-FDIRKE  383 (514)
T ss_pred             HHHHHh-ccCcch--hHHHHHHHHHHHhhcCCHHHHHHHHHc-----------------ccHHHHHHHHhccc-hHHHHH
Confidence            211111 111111  256789999999999987765 44443                 47899999999887 789999


Q ss_pred             HHHHHHHHhcCCchh------hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCC-CCCCC---HHHHHHHHHCCCcHhHH
Q 041643          427 AIRSIGCLAKTFPAK------EKRMIGPLVALLSNRNVDVATEAVIALSKFVSP-DNFNR---SEHSKAIIEFDGVPPLM  496 (576)
Q Consensus       427 a~~aLgnLa~~~~~~------~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~-~n~~~---~~~~~~Iv~~ggi~~Lv  496 (576)
                      |+.||+|++......      +.|+|+||..+|...+.++...+--+|.|+--. +..-.   ......|.+.||+..+=
T Consensus       384 AawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE  463 (514)
T KOG0166|consen  384 AAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIE  463 (514)
T ss_pred             HHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHH
Confidence            999999998766532      458999999999988988888788888876311 11000   23456788899999887


Q ss_pred             HhhccChh-HHHHHHHHH
Q 041643          497 RLLKISDR-AQVHGLVFL  513 (576)
Q Consensus       497 ~LL~~~d~-vq~~A~~~L  513 (576)
                      .|=.+.++ +=..|...+
T Consensus       464 ~LQ~hen~~Iy~~A~~II  481 (514)
T KOG0166|consen  464 NLQSHENEEIYKKAYKII  481 (514)
T ss_pred             HhhccccHHHHHHHHHHH
Confidence            76666554 555566644

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.80  E-value=8.8e-18  Score=170.75  Aligned_cols=366  Identities=16%  Similarity=0.174  Sum_probs=249.1

Q ss_pred             HHHHHHHHHHHHHc--hh-cCccchhhhccccccHHHHHHHHHhhhcch-----HHHhhh-ccc--C-cc----ccCCCC
Q 041643           90 AKNLDRSLTLVRRC--KH-AGVLRHVFSITTNADFKKVFSLLESSIGDM-----RWLLTI-FDS--D-EV----NLSLPP  153 (576)
Q Consensus        90 ~~t~~~a~~~~~~C--~~-~g~~~r~~~i~~~~~l~~l~~~L~~~~~~~-----~~ll~~-s~~--~-~~----~~~lp~  153 (576)
                      .+..-.|..-+|+.  +. ++-...+   +.+|-+|+++..++.+-.++     .|.+.. +..  + ..    ..++|.
T Consensus        85 ie~q~qav~kFR~~LS~E~~PPIq~V---IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPl  161 (526)
T COG5064          85 IEQQLQAVYKFRKLLSKETSPPIQPV---IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPL  161 (526)
T ss_pred             HHHHHHHHHHHHHHhccccCCCchhH---HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHH
Confidence            33344455566654  22 3344433   46899999999998766653     676643 322  1 11    113333


Q ss_pred             CCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCC-hHHHHHHHHHHHHh
Q 041643          154 IASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAAS-PDAQTAAANALFNI  232 (576)
Q Consensus       154 ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~-~~~q~~AA~AL~nL  232 (576)
                      +             |++|.++..+.|++|.++|+|+|.+++.+|+.|.+.|++.||+.+|.+... ...-.+|.|.|.||
T Consensus       162 f-------------iqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl  228 (526)
T COG5064         162 F-------------IQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL  228 (526)
T ss_pred             H-------------HHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence            3             899999999999999999999999999999999999999999999988751 36778999999999


Q ss_pred             hcC--C-chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcch
Q 041643          233 ATD--Q-ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPE  309 (576)
Q Consensus       233 a~~--~-~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i  309 (576)
                      +..  | .+...|-  -++|.|.+|+.+.++++...|.||+.+|+....++-+++...|..+.||++|.+++.+-   .-
T Consensus       229 cRGknP~P~w~~is--qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~i---qt  303 (526)
T COG5064         229 CRGKNPPPDWSNIS--QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKI---QT  303 (526)
T ss_pred             hCCCCCCCchHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccc---cC
Confidence            983  3 3333332  37999999999999999999999999999888888899999999999999998763210   11


Q ss_pred             hhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc-hhccc
Q 041643          310 SAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL-WSAES  388 (576)
Q Consensus       310 ~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I-avae~  388 (576)
                      +...++.++|-.....           .....+.|.++.+-...  +.|  |..++..|||.+.+++.||.+.| +|+|.
T Consensus       304 PalR~vGNIVTG~D~Q-----------TqviI~~G~L~a~~~lL--s~~--ke~irKEaCWTiSNITAGnteqiqavid~  368 (526)
T COG5064         304 PALRSVGNIVTGSDDQ-----------TQVIINCGALKAFRSLL--SSP--KENIRKEACWTISNITAGNTEQIQAVIDA  368 (526)
T ss_pred             HHHHhhcCeeecCccc-----------eehheecccHHHHHHHh--cCh--hhhhhhhhheeecccccCCHHHHHHHHhc
Confidence            1112333333222211           11111111222110111  122  12356789999999999998876 66665


Q ss_pred             chHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch--------hhhCcHHHHHHhhcCCCHHH
Q 041643          389 NAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA--------KEKRMIGPLVALLSNRNVDV  460 (576)
Q Consensus       389 ~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~--------~~~~~I~~LV~LL~~~~~~V  460 (576)
                      +                 ++++|+.+|+..+ -..+..|+.|+.|.....-.        .+.|+|.||-++|.-.+..+
T Consensus       369 n-----------------liPpLi~lls~ae-~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki  430 (526)
T COG5064         369 N-----------------LIPPLIHLLSSAE-YKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI  430 (526)
T ss_pred             c-----------------cchHHHHHHHHHH-HHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc
Confidence            4                 5789999998766 56788899999999764422        25689999999997665555


Q ss_pred             HHHHHHHHHhhcCC---------CCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHH
Q 041643          461 ATEAVIALSKFVSP---------DNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLV  511 (576)
Q Consensus       461 ~~eAa~AL~nla~~---------~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~  511 (576)
                      -+.+--++-|+--.         .|.  .....++-++||...+-.+=.+.+. +=..|..
T Consensus       431 iev~LD~~eniLk~Ge~d~~~~~~ni--n~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYs  489 (526)
T COG5064         431 IEVALDAIENILKVGEQDRLRYGKNI--NIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYS  489 (526)
T ss_pred             hhhhHHHHHHHHhhhhHHHHhccCCc--cHHHHHHHhcccHHHHHHhhhccccHHHHHHHH
Confidence            55555555554322         221  1234466669999888888777665 4334444

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.73  E-value=2.8e-15  Score=169.91  Aligned_cols=346  Identities=17%  Similarity=0.207  Sum_probs=246.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcC
Q 041643          167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVL  246 (576)
Q Consensus       167 li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G  246 (576)
                      ++..|+.++.+....+...|..|+-. .+|+..+.+.|.||+|+++|++++ .+.+..|.++|+|||.+++.|..|++.|
T Consensus       295 Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd~~~R~~mV~~G  372 (708)
T PF05804_consen  295 LVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFDPELRSQMVSLG  372 (708)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcCHHHHHHHHHCC
Confidence            48899999999999999999999886 789999999999999999999998 9999999999999999999999999999


Q ss_pred             CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccc
Q 041643          247 GVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMT  326 (576)
Q Consensus       247 avp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~  326 (576)
                      .||.|+.+|.+++  .+..+...|.+|+. ++++|..|...++||.|+++|-.+...+....   ..++..........+
T Consensus       373 lIPkLv~LL~d~~--~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~e---liaL~iNLa~~~rna  446 (708)
T PF05804_consen  373 LIPKLVELLKDPN--FREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLE---LIALLINLALNKRNA  446 (708)
T ss_pred             CcHHHHHHhCCCc--hHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHH---HHHHHHHHhcCHHHH
Confidence            9999999998764  45678888899996 56899999999999999998755421111100   001100000000000


Q ss_pred             ccccccCCCCCCCCCCCCCCCCcc-cccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHH
Q 041643          327 EKSTNVTNNSDGSSRGGHGQHYNK-KDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAK  405 (576)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~  405 (576)
                                ..+..+ +|++.+. +.....||-        ....+.|+|..+.          ..+. .|.       
T Consensus       447 ----------qlm~~g-~gL~~L~~ra~~~~D~l--------LlKlIRNiS~h~~----------~~k~-~f~-------  489 (708)
T PF05804_consen  447 ----------QLMCEG-NGLQSLMKRALKTRDPL--------LLKLIRNISQHDG----------PLKE-LFV-------  489 (708)
T ss_pred             ----------HHHHhc-CcHHHHHHHHHhcccHH--------HHHHHHHHHhcCc----------hHHH-HHH-------
Confidence                      001111 3555421 112233432        3467788876531          2232 232       


Q ss_pred             HHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCC--CHHHHHHHHHHHHhhcCCCCCC
Q 041643          406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNR--NVDVATEAVIALSKFVSPDNFN  478 (576)
Q Consensus       406 ~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~--~~~V~~eAa~AL~nla~~~n~~  478 (576)
                      ..|..|+.++.+++++++...|+++|+||.-...+     .+.+.+|-|.++|..+  +.++.-|++..++.++++.   
T Consensus       490 ~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~---  566 (708)
T PF05804_consen  490 DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP---  566 (708)
T ss_pred             HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH---
Confidence            46788889998888889999999999999743222     2347899999999644  6689999999999998753   


Q ss_pred             CHHHHHHHHHCCCcHhHHHhhccC--hh-HHHHHHHHHHHHhcccCchHHHHh-ccchhhHhhhhcccCCCCCcHHHHHH
Q 041643          479 RSEHSKAIIEFDGVPPLMRLLKIS--DR-AQVHGLVFLCYLALSAGNSKALEQ-ARALNALEGAARTVLPQHPELRDLFA  554 (576)
Q Consensus       479 ~~~~~~~Iv~~ggi~~Lv~LL~~~--d~-vq~~A~~~L~~lal~~~~~~~l~~-~~~l~~Le~~~~~~~~q~~~~~~l~~  554 (576)
                        +-...+.+.|.++.|+.||+..  |. ....-+.+...+..|...++.+.+ .++...|-.+-+.   .+.+++....
T Consensus       567 --~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d---~N~~ir~~~d  641 (708)
T PF05804_consen  567 --ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHD---KNAEIRKVCD  641 (708)
T ss_pred             --HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcC---CCHHHHHHHH
Confidence              5577888999999999999753  33 334444444567788888887765 5555555432111   1357788888


Q ss_pred             HHHHHHHhhcC
Q 041643          555 QAIYHLTLYQA  565 (576)
Q Consensus       555 ~a~~~l~~y~~  565 (576)
                      .++.++..|..
T Consensus       642 ~~Ldii~e~d~  652 (708)
T PF05804_consen  642 NALDIIAEYDE  652 (708)
T ss_pred             HHHHHHHHhCH
Confidence            88888877754

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.69  E-value=7.7e-15  Score=166.34  Aligned_cols=302  Identities=18%  Similarity=0.161  Sum_probs=199.1

Q ss_pred             HHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChh
Q 041643          182 AANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVK  261 (576)
Q Consensus       182 AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~  261 (576)
                      +..-|.||+.+ +.+...+.+.|.|++|+++|++++ .+....+++.|.+||...+|+..|.+.|+|+.|++++.+++.+
T Consensus       269 ~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~  346 (708)
T PF05804_consen  269 AFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENED  346 (708)
T ss_pred             HHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence            44558999985 788899999999999999999988 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCC
Q 041643          262 VQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSR  341 (576)
Q Consensus       262 vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~  341 (576)
                      ++..+...|.||+. +++.|..+.+.|.||.|+.+|..++...    +    ++    ..-.+              +  
T Consensus       347 l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~~~~----v----al----~iLy~--------------L--  397 (708)
T PF05804_consen  347 LVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPNFRE----V----AL----KILYN--------------L--  397 (708)
T ss_pred             HHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCchHH----H----HH----HHHHH--------------h--
Confidence            99999999999997 5789999999999999999997542100    0    00    00000              0  


Q ss_pred             CCCCCCCcccccccCCHHHHHHH-HHHHHHHHHH-hhcCCcccc-----hhcccchHHHHhhhccCchhHHHHHHHHHHH
Q 041643          342 GGHGQHYNKKDRELETPEVKAKV-RIACAEALWK-LSKGCLLSL-----WSAESNAELRRSAFKTNSPAAKAVLDQLLRL  414 (576)
Q Consensus       342 ~~~g~~~~~~~~e~~d~~vk~~~-k~~Aa~ALw~-La~g~~~~I-----avae~~~~lrr~a~k~~s~a~~~vV~~Ll~l  414 (576)
                                   +.|++.|... ..+|...|-. |-.++...+     ++.-.-.--+|.+ ..  ....++++.|++.
T Consensus       398 -------------S~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna-ql--m~~g~gL~~L~~r  461 (708)
T PF05804_consen  398 -------------SMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNA-QL--MCEGNGLQSLMKR  461 (708)
T ss_pred             -------------ccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH-HH--HHhcCcHHHHHHH
Confidence                         0011111000 0112222222 112222211     0000000000000 00  0001223444432


Q ss_pred             hhhcCChhhHHHHHHHHHHHhcCCchhhh---CcHHHHHHhhcC-CCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCC
Q 041643          415 IHEESDAMLQTPAIRSIGCLAKTFPAKEK---RMIGPLVALLSN-RNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFD  490 (576)
Q Consensus       415 L~~~~~~~lq~~a~~aLgnLa~~~~~~~~---~~I~~LV~LL~~-~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~g  490 (576)
                      .-+.. +.+   -++.|-|++...+..+.   ..|++|++++++ .+++..-|+..+|+|++.++    .+-.+.+.+.+
T Consensus       462 a~~~~-D~l---LlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~----ld~~~ll~~~~  533 (708)
T PF05804_consen  462 ALKTR-DPL---LLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD----LDWAQLLQEYN  533 (708)
T ss_pred             HHhcc-cHH---HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC----cCHHHHHHhCC
Confidence            22222 111   12455566554422222   357888888865 47789999999999998754    24455666789


Q ss_pred             CcHhHHHhhccC---hhHHHHHHHHHHHHhcccCchHHHHhccchhhHhhh
Q 041643          491 GVPPLMRLLKIS---DRAQVHGLVFLCYLALSAGNSKALEQARALNALEGA  538 (576)
Q Consensus       491 gi~~Lv~LL~~~---d~vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le~~  538 (576)
                      -+|.|.++|..+   |.++.+++.+++.++....-...+++.|.++.|.++
T Consensus       534 llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~L  584 (708)
T PF05804_consen  534 LLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIEL  584 (708)
T ss_pred             HHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHH
Confidence            999999999765   238888999999998777778889999999998633

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.59  E-value=9e-14  Score=155.05  Aligned_cols=306  Identities=19%  Similarity=0.214  Sum_probs=225.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC---CchHHHH
Q 041643          166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD---QETVRFI  242 (576)
Q Consensus       166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~---~~~~~~i  242 (576)
                      +.|.+|..-+...+.+||.-|--++..+.+.+..+-+-||||.||.||++.+ .++|.+|++||.||.-.   .+|+-+|
T Consensus       237 e~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~NKlai  315 (717)
T KOG1048|consen  237 EVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSNKLAI  315 (717)
T ss_pred             HHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcccchhh
Confidence            3488999889999999999999999888888899999999999999999999 99999999999999963   3588899


Q ss_pred             HHcCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhh
Q 041643          243 VDVLGVPIIVSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQM  321 (576)
Q Consensus       243 v~~Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~  321 (576)
                      .++++||.++.+|+. ++.++++..+.+|.||+++ +..+..++... +..|-..+-..    ++               
T Consensus       316 ~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~a-l~tLt~~vI~P----~S---------------  374 (717)
T KOG1048|consen  316 KELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSA-LSTLTDNVIIP----HS---------------  374 (717)
T ss_pred             hhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHH-HHHHHHhhccc----cc---------------
Confidence            999999999999986 8899999999999999987 46666666543 44444433111    11               


Q ss_pred             hccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc
Q 041643          322 KKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS  401 (576)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s  401 (576)
                                      ++...    +.  . +..++..+    -.+++++|.|++.-+.+      .-..+|+       
T Consensus       375 ----------------gw~~~----~~--~-~~~~~~~v----f~n~tgcLRNlSs~~~e------aR~~mr~-------  414 (717)
T KOG1048|consen  375 ----------------GWEEE----PA--P-RKAEDSTV----FRNVTGCLRNLSSAGQE------AREQMRE-------  414 (717)
T ss_pred             ----------------ccCCC----Cc--c-ccccccee----eehhhhhhccccchhHH------HHHHHhh-------
Confidence                            01101    11  1 23333332    25789999999753211      1112222       


Q ss_pred             hhHHHHHHHHHHHhhh-----cCChhhHHHHHHHHHHHhcCCc-------------------------------------
Q 041643          402 PAAKAVLDQLLRLIHE-----ESDAMLQTPAIRSIGCLAKTFP-------------------------------------  439 (576)
Q Consensus       402 ~a~~~vV~~Ll~lL~~-----~~~~~lq~~a~~aLgnLa~~~~-------------------------------------  439 (576)
                        |.|+|+.|+.++++     ..+..-.++|++.+-||.--..                                     
T Consensus       415 --c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~  492 (717)
T KOG1048|consen  415 --CDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKS  492 (717)
T ss_pred             --ccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhc
Confidence              56889999887762     2235567889988888843100                                     


Q ss_pred             ----------hhh--h-C--------cHHHHHHhh-cCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHH-HHCCCcHhHH
Q 041643          440 ----------AKE--K-R--------MIGPLVALL-SNRNVDVATEAVIALSKFVSPDNFNRSEHSKAI-IEFDGVPPLM  496 (576)
Q Consensus       440 ----------~~~--~-~--------~I~~LV~LL-~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~I-v~~ggi~~Lv  496 (576)
                                ++.  . |        +|.+-..+| .+.+..+.+.+|.||-|++.+.+......+..+ ..+.|+++|+
T Consensus       493 ~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~  572 (717)
T KOG1048|consen  493 DDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLV  572 (717)
T ss_pred             hhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHH
Confidence                      000  0 1        244434444 466888999999999999877766655556666 7899999999


Q ss_pred             HhhccChh-HHHHHHHHHHHHhcccCchHHHHhccchhhHh
Q 041643          497 RLLKISDR-AQVHGLVFLCYLALSAGNSKALEQARALNALE  536 (576)
Q Consensus       497 ~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le  536 (576)
                      .||+.+++ +-..++.+|.|++.+..|.+.|. ..+++-|.
T Consensus       573 ~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv  612 (717)
T KOG1048|consen  573 ELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLV  612 (717)
T ss_pred             HHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHH
Confidence            99999988 77789999999999999999988 66677765

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.41  E-value=1.9e-11  Score=136.76  Aligned_cols=320  Identities=17%  Similarity=0.206  Sum_probs=215.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhcC--cccHHHHHhcCCHHHHHHHHcc-CCChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643          167 FISTIQMGQIKSRVDAANELASLARDN--NRNRKIIVEEGGILPLLKLLKE-AASPDAQTAAANALFNIATDQETVRFIV  243 (576)
Q Consensus       167 li~~L~~G~~e~k~~AA~~L~~La~~~--~~~~~~I~~~GgIppLV~LL~~-g~~~~~q~~AA~AL~nLa~~~~~~~~iv  243 (576)
                      +|++|..-+.+.+.+|+.+|.||.-.+  +.|+-.|.+.||||.|+++|+. ++ .+++++.+..|+||+++..-+..|+
T Consensus       280 Lv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D-~ev~e~iTg~LWNLSS~D~lK~~ii  358 (717)
T KOG1048|consen  280 LVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQD-DEVRELITGILWNLSSNDALKMLII  358 (717)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcc-hHHHHHHHHHHhcccchhHHHHHHH
Confidence            389999999999999999999998443  4599999999999999999997 56 9999999999999999855566555


Q ss_pred             HcCCHHHHHHhhcCC--------------ChhHHHHHHHHHHHHhcCChHHHHHHHhc-CCchhHHHhhccccc--cCCC
Q 041643          244 DVLGVPIIVSVLGEA--------------PVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIA--LDLP  306 (576)
Q Consensus       244 ~~Gavp~LV~lL~s~--------------~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~-g~I~~LV~LL~~~t~--~~~~  306 (576)
                      .. +++.|.+-+-.+              ...+-.+++.+|.|+.+...+.|+.+.+. |.|..|+..+++-.-  +-++
T Consensus       359 ~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~  437 (717)
T KOG1048|consen  359 TS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDS  437 (717)
T ss_pred             HH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccc
Confidence            44 677776655221              13566779999999999888999999887 889999999874311  0111


Q ss_pred             cchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhc---------
Q 041643          307 KPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSK---------  377 (576)
Q Consensus       307 ~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~---------  377 (576)
                      |      +..+-||...++..                       +.. .|-|       ......+.+...         
T Consensus       438 K------~VENcvCilRNLSY-----------------------rl~-~Evp-------~~~~~~~~~~~~~~~~~~~~~  480 (717)
T KOG1048|consen  438 K------SVENCVCILRNLSY-----------------------RLE-AEVP-------PKYRQVLANIARLPGVGPPAE  480 (717)
T ss_pred             h------hHHHHHHHHhhcCc-----------------------hhh-hhcC-------HhhhhHhhcccccccCCCccc
Confidence            1      22223444333211                       000 0000       001111111110         


Q ss_pred             -----CCc-----cc-----c---hhcccchH-HHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCC
Q 041643          378 -----GCL-----LS-----L---WSAESNAE-LRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTF  438 (576)
Q Consensus       378 -----g~~-----~~-----I---avae~~~~-lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~  438 (576)
                           +..     .+     |   ..+..+.+ +.+          .-+|..-+.+|.....+..++.+.++|-||+-..
T Consensus       481 ~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~----------p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~  550 (717)
T KOG1048|consen  481 SVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWH----------PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL  550 (717)
T ss_pred             ccccccchhhhchhcccccCCcccccCCCCceeeec----------HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence                 000     00     0   00000000 111          1345554556665555788999999999997532


Q ss_pred             ch----------hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh----
Q 041643          439 PA----------KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR----  504 (576)
Q Consensus       439 ~~----------~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~----  504 (576)
                      .-          +.+++.|+|++||++.+.+|.+.++.+|.|++.+-     . .+.++..++++.||+.|..+..    
T Consensus       551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~-----r-nk~ligk~a~~~lv~~Lp~~~~~~~~  624 (717)
T KOG1048|consen  551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI-----R-NKELIGKYAIPDLVRCLPGSGPSTSL  624 (717)
T ss_pred             CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc-----h-hhhhhhcchHHHHHHhCcCCCCCcCc
Confidence            10          34578999999999999999999999999998642     3 3445558999999999974321    


Q ss_pred             ---HHHHHHHHHHHHh-cccCchHHHHhccchhhHhhhhcc
Q 041643          505 ---AQVHGLVFLCYLA-LSAGNSKALEQARALNALEGAART  541 (576)
Q Consensus       505 ---vq~~A~~~L~~la-l~~~~~~~l~~~~~l~~Le~~~~~  541 (576)
                         +-...+.+|.++. .+..+...+.+.++++.|..+.+.
T Consensus       625 sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s  665 (717)
T KOG1048|consen  625 SEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS  665 (717)
T ss_pred             hHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc
Confidence               3344666777775 677888999999999999844444

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.35  E-value=1.8e-11  Score=107.66  Aligned_cols=100  Identities=22%  Similarity=0.302  Sum_probs=93.3

Q ss_pred             HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC
Q 041643          199 IIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELD  277 (576)
Q Consensus       199 ~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~  277 (576)
                      .+++.|+|++|+++|++++ +..++.|+++|.+++.+ ++.+..+++.|++|.|+++|++++..++..++|+|++|+.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4678999999999999998 99999999999999997 788889999999999999999999999999999999999988


Q ss_pred             hHHHHHHHhcCCchhHHHhhcc
Q 041643          278 SIAQEEFVRENVTRSLISLLCM  299 (576)
Q Consensus       278 ~~~r~~i~~~g~I~~LV~LL~~  299 (576)
                      +..++.+.+.|+++.|+++|..
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~  102 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDS  102 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhc
Confidence            8888899999999999999954

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.28  E-value=7.7e-11  Score=103.66  Aligned_cols=110  Identities=26%  Similarity=0.380  Sum_probs=100.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC-chHHHHH
Q 041643          165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQ-ETVRFIV  243 (576)
Q Consensus       165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~-~~~~~iv  243 (576)
                      ..++..|+.++.+.|..|+.+|.+++..+++++..+++.|++|.|+++|.+++ +..+..|+++|+||+.+. +....++
T Consensus        10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~   88 (120)
T cd00020          10 PALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED-EEVVKAALWALRNLAAGPEDNKLIVL   88 (120)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-HHHHHHHHHHHHHHccCcHHHHHHHH
Confidence            34478899999999999999999999987889999999999999999999988 999999999999999976 5567788


Q ss_pred             HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 041643          244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAE  275 (576)
Q Consensus       244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~  275 (576)
                      +.|+++.|+++|.+++.++++.++|+|.+|+.
T Consensus        89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.24  E-value=4.2e-10  Score=114.34  Aligned_cols=200  Identities=19%  Similarity=0.181  Sum_probs=150.9

Q ss_pred             HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCCh
Q 041643          199 IIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDS  278 (576)
Q Consensus       199 ~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~  278 (576)
                      .+.+.+.+..|+.+|+...+|..|+.|..+++|.+..+.++..|.+.|+++.+..+|.++++.+++.|.++|.|++.+ .
T Consensus         7 ~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~   85 (254)
T PF04826_consen    7 NILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-D   85 (254)
T ss_pred             CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-h
Confidence            346778899999999976559999999999999999999999999999999999999999999999999999999975 4


Q ss_pred             HHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCH
Q 041643          279 IAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETP  358 (576)
Q Consensus       279 ~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~  358 (576)
                      +++..+..  .|+.+++.+.+.                                                          
T Consensus        86 en~~~Ik~--~i~~Vc~~~~s~----------------------------------------------------------  105 (254)
T PF04826_consen   86 ENQEQIKM--YIPQVCEETVSS----------------------------------------------------------  105 (254)
T ss_pred             hhHHHHHH--HHHHHHHHHhcC----------------------------------------------------------
Confidence            56554432  233333322110                                                          


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCC
Q 041643          359 EVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTF  438 (576)
Q Consensus       359 ~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~  438 (576)
                                                                                 ..+..+|..+++.|.||+.+.
T Consensus       106 -----------------------------------------------------------~lns~~Q~agLrlL~nLtv~~  126 (254)
T PF04826_consen  106 -----------------------------------------------------------PLNSEVQLAGLRLLTNLTVTN  126 (254)
T ss_pred             -----------------------------------------------------------CCCCHHHHHHHHHHHccCCCc
Confidence                                                                       001233444445555554332


Q ss_pred             chh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh--HHHHHHHHHH
Q 041643          439 PAK--EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR--AQVHGLVFLC  514 (576)
Q Consensus       439 ~~~--~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~--vq~~A~~~L~  514 (576)
                      ...  =.+.||.|+++|..++..++..+.++|.|++++     ++..+.++.+++...++.|+...+.  +-..++.+.-
T Consensus       127 ~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-----p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~  201 (254)
T PF04826_consen  127 DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-----PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFE  201 (254)
T ss_pred             chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC-----HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHH
Confidence            110  013589999999999999999999999999974     5788999999999999999987643  6677888888


Q ss_pred             HHhcccCch
Q 041643          515 YLALSAGNS  523 (576)
Q Consensus       515 ~lal~~~~~  523 (576)
                      +|..+....
T Consensus       202 ni~~~~~~~  210 (254)
T PF04826_consen  202 NINENIKKE  210 (254)
T ss_pred             HHHHhhCcc
Confidence            886554443

>PRK09687 putative lyase; Provisional

Probab=99.23  E-value=2.8e-10  Score=117.42  Aligned_cols=216  Identities=19%  Similarity=0.123  Sum_probs=152.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 041643          168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG  247 (576)
Q Consensus       168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga  247 (576)
                      ..++++.+...|..|+..|+.|-.. +..     ..-.+|.|..++.++.++.++..|+.+|+++.......    ..-+
T Consensus        60 ~~ll~~~d~~vR~~A~~aLg~lg~~-~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a  129 (280)
T PRK09687         60 IELCSSKNPIERDIGADILSQLGMA-KRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKI  129 (280)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCCC-ccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHH
Confidence            4567788888888888888887532 111     12356777777444333888888989988886432211    1114


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccc
Q 041643          248 VPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTE  327 (576)
Q Consensus       248 vp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~  327 (576)
                      +..+...+.+.+..|+..++++|+.+..  +         .+|++|+.+|..+                           
T Consensus       130 ~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~---------~ai~~L~~~L~d~---------------------------  171 (280)
T PRK09687        130 VEQSQITAFDKSTNVRFAVAFALSVIND--E---------AAIPLLINLLKDP---------------------------  171 (280)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHhccCC--H---------HHHHHHHHHhcCC---------------------------
Confidence            5567777777788888888888876542  1         2578888888421                           


Q ss_pred             cccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHH
Q 041643          328 KSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAV  407 (576)
Q Consensus       328 ~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~v  407 (576)
                                                   |+.    ++..|+.+|..+..++                         ..+
T Consensus       172 -----------------------------~~~----VR~~A~~aLg~~~~~~-------------------------~~~  193 (280)
T PRK09687        172 -----------------------------NGD----VRNWAAFALNSNKYDN-------------------------PDI  193 (280)
T ss_pred             -----------------------------CHH----HHHHHHHHHhcCCCCC-------------------------HHH
Confidence                                         333    3467888887663322                         135


Q ss_pred             HHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 041643          408 LDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAII  487 (576)
Q Consensus       408 V~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv  487 (576)
                      ++.|+..|.+.+ +.++..|+.+||.+-      +..+||+|++.|++++  +...|+.||+++.+.             
T Consensus       194 ~~~L~~~L~D~~-~~VR~~A~~aLg~~~------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-------------  251 (280)
T PRK09687        194 REAFVAMLQDKN-EEIRIEAIIGLALRK------DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-------------  251 (280)
T ss_pred             HHHHHHHhcCCC-hHHHHHHHHHHHccC------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-------------
Confidence            778888887765 889999999999873      3568999999998866  678999999999642             


Q ss_pred             HCCCcHhHHHhhc-cChh-HHHHHHHHH
Q 041643          488 EFDGVPPLMRLLK-ISDR-AQVHGLVFL  513 (576)
Q Consensus       488 ~~ggi~~Lv~LL~-~~d~-vq~~A~~~L  513 (576)
                        ..+|.|.++++ +.|. ++..|.++|
T Consensus       252 --~a~p~L~~l~~~~~d~~v~~~a~~a~  277 (280)
T PRK09687        252 --TLLPVLDTLLYKFDDNEIITKAIDKL  277 (280)
T ss_pred             --hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence              27899999997 6777 888887765

>PRK09687 putative lyase; Provisional

Probab=99.22  E-value=5.4e-10  Score=115.32  Aligned_cols=232  Identities=15%  Similarity=0.157  Sum_probs=166.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHc
Q 041643          166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDV  245 (576)
Q Consensus       166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~  245 (576)
                      +++..|...+...|..|+..|..+-.           ...++.+.+++++.+ +..+..|+++|+.|......     ..
T Consensus        27 ~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~-----~~   89 (280)
T PRK09687         27 ELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC-----QD   89 (280)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc-----hH
Confidence            34788888899999999999886631           336788889998888 99999999999998753221     12


Q ss_pred             CCHHHHHHh-hcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643          246 LGVPIIVSV-LGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE  324 (576)
Q Consensus       246 Gavp~LV~l-L~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~  324 (576)
                      -+++.|..+ +++++..|+..|+.+|+++....+..         -+.++..|..                         
T Consensus        90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~---------~~~a~~~l~~-------------------------  135 (280)
T PRK09687         90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY---------SPKIVEQSQI-------------------------  135 (280)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---------chHHHHHHHH-------------------------
Confidence            367888877 57788899999999999986432110         1122222210                         


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhH
Q 041643          325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAA  404 (576)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~  404 (576)
                                                 ....+|+.|    +..+++||.++..                           
T Consensus       136 ---------------------------~~~D~~~~V----R~~a~~aLg~~~~---------------------------  157 (280)
T PRK09687        136 ---------------------------TAFDKSTNV----RFAVAFALSVIND---------------------------  157 (280)
T ss_pred             ---------------------------HhhCCCHHH----HHHHHHHHhccCC---------------------------
Confidence                                       000124544    4678888865421                           


Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 041643          405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSK  484 (576)
Q Consensus       405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~  484 (576)
                      ...++.|+.+|.+.+ +.+...|+.+||.+...    ...++++|+.+|.+.+.+|+.+|+++|+++-..          
T Consensus       158 ~~ai~~L~~~L~d~~-~~VR~~A~~aLg~~~~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~----------  222 (280)
T PRK09687        158 EAAIPLLINLLKDPN-GDVRNWAAFALNSNKYD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK----------  222 (280)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHhcCCCC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh----------
Confidence            135789999998765 78999999999998321    235799999999999999999999999987431          


Q ss_pred             HHHHCCCcHhHHHhhccChhHHHHHHHHHHHHhcccCchHHHHhccchhhHhh
Q 041643          485 AIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEG  537 (576)
Q Consensus       485 ~Iv~~ggi~~Lv~LL~~~d~vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le~  537 (576)
                           ..+++|++.|+.++ +...++.+|+.+    ++.      ..+|.|+.
T Consensus       223 -----~av~~Li~~L~~~~-~~~~a~~ALg~i----g~~------~a~p~L~~  259 (280)
T PRK09687        223 -----RVLSVLIKELKKGT-VGDLIIEAAGEL----GDK------TLLPVLDT  259 (280)
T ss_pred             -----hHHHHHHHHHcCCc-hHHHHHHHHHhc----CCH------hHHHHHHH
Confidence                 48899999998766 666788888777    332      45777763

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.14  E-value=4.3e-09  Score=106.98  Aligned_cols=190  Identities=19%  Similarity=0.212  Sum_probs=149.5

Q ss_pred             HHHHHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643          165 WSFISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIV  243 (576)
Q Consensus       165 ~~li~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv  243 (576)
                      ..++..|+.. ++..++.|..+|.+.+.. +.+++.|.+.|||+.+..+|.+++ +..|+.|.+||.||+.+.+++..|-
T Consensus        15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~-~~vr~~AL~aL~Nls~~~en~~~Ik   92 (254)
T PF04826_consen   15 QKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPN-PSVREKALNALNNLSVNDENQEQIK   92 (254)
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCC-hHHHHHHHHHHHhcCCChhhHHHHH
Confidence            4568889965 889999999999999875 789999999999999999999998 9999999999999999999988764


Q ss_pred             HcCCHHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhh
Q 041643          244 DVLGVPIIVSVLGEA--PVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQM  321 (576)
Q Consensus       244 ~~Gavp~LV~lL~s~--~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~  321 (576)
                      .  -|+.+.+...+.  +.++|..+..+|.||+-. .+++..++.  .|+.|+.||.+|.                    
T Consensus        93 ~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-~~~~~~l~~--~i~~ll~LL~~G~--------------------  147 (254)
T PF04826_consen   93 M--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-NDYHHMLAN--YIPDLLSLLSSGS--------------------  147 (254)
T ss_pred             H--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-cchhhhHHh--hHHHHHHHHHcCC--------------------
Confidence            3  466666655443  578999999999999865 456667754  6999999997652                    


Q ss_pred             hccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc
Q 041643          322 KKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS  401 (576)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s  401 (576)
                                                          .    ..|..+.+.|++||.++           +..|..+..  
T Consensus       148 ------------------------------------~----~~k~~vLk~L~nLS~np-----------~~~~~Ll~~--  174 (254)
T PF04826_consen  148 ------------------------------------E----KTKVQVLKVLVNLSENP-----------DMTRELLSA--  174 (254)
T ss_pred             ------------------------------------h----HHHHHHHHHHHHhccCH-----------HHHHHHHhc--
Confidence                                                0    14578999999999764           333323321  


Q ss_pred             hhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCC
Q 041643          402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTF  438 (576)
Q Consensus       402 ~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~  438 (576)
                          .++..++.++....+.++...++.-..||....
T Consensus       175 ----q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~  207 (254)
T PF04826_consen  175 ----QVLSSFLSLFNSSESKENLLRVLTFFENINENI  207 (254)
T ss_pred             ----cchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence                356778888877655677888999999996644

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.09  E-value=4.3e-08  Score=109.28  Aligned_cols=272  Identities=18%  Similarity=0.214  Sum_probs=207.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHH
Q 041643          163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFI  242 (576)
Q Consensus       163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~i  242 (576)
                      +.-.+...|+..++..|..++..|.+++.+++.....+.+.+.++.++.+|.+++ ..+.+.|+.+|.+|+.++..-..+
T Consensus        78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~~~~~~~l  156 (503)
T PF10508_consen   78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASHPEGLEQL  156 (503)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCCchhHHHH
Confidence            3444577888999999999999999998876666677888999999999999998 999999999999999999888889


Q ss_pred             HHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhh
Q 041643          243 VDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK  322 (576)
Q Consensus       243 v~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~  322 (576)
                      ++.+.++.|..++...++.++..+.+++.+++..+++....+...|.++.++..|.++                      
T Consensus       157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d----------------------  214 (503)
T PF10508_consen  157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD----------------------  214 (503)
T ss_pred             hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc----------------------
Confidence            9999999999999887888999999999999999999999999999999999988542                      


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCch
Q 041643          323 KEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP  402 (576)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~  402 (576)
                                                        |.    -+|.+|...|..|+..+.+.           ++-.     
T Consensus       215 ----------------------------------Di----Lvqlnalell~~La~~~~g~-----------~yL~-----  240 (503)
T PF10508_consen  215 ----------------------------------DI----LVQLNALELLSELAETPHGL-----------QYLE-----  240 (503)
T ss_pred             ----------------------------------cH----HHHHHHHHHHHHHHcChhHH-----------HHHH-----
Confidence                                              21    14578899999998743221           1111     


Q ss_pred             hHHHHHHHHHHHhhhcCC----hhhHHHHH-HHHHHHhcCCchhhh----CcHHHHHHhhcCCCHHHHHHHHHHHHhhcC
Q 041643          403 AAKAVLDQLLRLIHEESD----AMLQTPAI-RSIGCLAKTFPAKEK----RMIGPLVALLSNRNVDVATEAVIALSKFVS  473 (576)
Q Consensus       403 a~~~vV~~Ll~lL~~~~~----~~lq~~a~-~aLgnLa~~~~~~~~----~~I~~LV~LL~~~~~~V~~eAa~AL~nla~  473 (576)
                       -.++++.|..++.+.+.    ..+..|+. +..|++++..+..-.    .++..|.+.+.+.+...+.-|.-+++.+++
T Consensus       241 -~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs  319 (503)
T PF10508_consen  241 -QQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS  319 (503)
T ss_pred             -hCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC
Confidence             12578888888765431    23455665 788999976443211    345556666778888888888889999986


Q ss_pred             CCCCCCHHHHHHH-HHC-CCcHhHHHhh----ccChh-HHHHHHHHHHHHh
Q 041643          474 PDNFNRSEHSKAI-IEF-DGVPPLMRLL----KISDR-AQVHGLVFLCYLA  517 (576)
Q Consensus       474 ~~n~~~~~~~~~I-v~~-ggi~~Lv~LL----~~~d~-vq~~A~~~L~~la  517 (576)
                      .     .+..+.+ ... +.++..+.-.    .++.. ++..++.++.++.
T Consensus       320 t-----~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il  365 (503)
T PF10508_consen  320 T-----VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL  365 (503)
T ss_pred             C-----HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            3     4667777 443 3445555443    33443 7888999888884

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=1e-07  Score=98.07  Aligned_cols=302  Identities=16%  Similarity=0.178  Sum_probs=204.0

Q ss_pred             hcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCC-ChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHH
Q 041643          172 QMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAA-SPDAQTAAANALFNIAT-DQETVRFIVDVLGVP  249 (576)
Q Consensus       172 ~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~-~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp  249 (576)
                      .+|+...-.++..+|-+|....+    -..+.-|..-+|++|.... +.+.-......+..-+. +.-||+.+++.|+.|
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            34455555677778887765433    4557788999999996442 14444444444544444 667899999999999


Q ss_pred             HHHHhh-cCCChhHHHHHHHHHHHHhcCCh---------HHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHH
Q 041643          250 IIVSVL-GEAPVKVQVAVANLVARMAELDS---------IAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLV  319 (576)
Q Consensus       250 ~LV~lL-~s~~~~vq~~Aa~aL~~LA~~~~---------~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v  319 (576)
                      .+.+.| +.|..++.....|++..|-.+++         +....|+++|+...|++.|..+.                  
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~------------------  254 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGI------------------  254 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccC------------------
Confidence            999776 55667788889999998876432         23346777888888888885431                  


Q ss_pred             hhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhcc
Q 041643          320 QMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKT  399 (576)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~  399 (576)
                                                           ||.+    ...+..+|..|+-.+.-.-.|+|            
T Consensus       255 -------------------------------------dp~~----L~~l~~tl~~lAVr~E~C~~I~e------------  281 (461)
T KOG4199|consen  255 -------------------------------------DPDS----LVSLSTTLKALAVRDEICKSIAE------------  281 (461)
T ss_pred             -------------------------------------CccH----HHHHHHHHHHHHHHHHHHHHHHH------------
Confidence                                                 2222    24677888888754321112233            


Q ss_pred             CchhHHHHHHHHHHHhhhcCChhhH---HHHHHHHHHHhcCCch----hhhCcHHHHHHhh--cCCCHHHHHHHHHHHHh
Q 041643          400 NSPAAKAVLDQLLRLIHEESDAMLQ---TPAIRSIGCLAKTFPA----KEKRMIGPLVALL--SNRNVDVATEAVIALSK  470 (576)
Q Consensus       400 ~s~a~~~vV~~Ll~lL~~~~~~~lq---~~a~~aLgnLa~~~~~----~~~~~I~~LV~LL--~~~~~~V~~eAa~AL~n  470 (576)
                           .|+++.|++++.+.......   ..|+..|..||.....    .+.|+.+.++.++  ...++.|-++++.+|+-
T Consensus       282 -----~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~  356 (461)
T KOG4199|consen  282 -----SGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISI  356 (461)
T ss_pred             -----ccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence                 25688899999874423333   4567777888865443    3568899999987  35678888888888887


Q ss_pred             hcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh---HHHHHHHHHHHHhcccCchHHHHhccchhhHhhhhcccCCCCC
Q 041643          471 FVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR---AQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHP  547 (576)
Q Consensus       471 la~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~---vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le~~~~~~~~q~~  547 (576)
                      ++--    .++|...+++.|+...-++-|+....   +|++|++.+.|++.+..+..++-=+.+++.|-...+.   -|+
T Consensus       357 l~LR----~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~---~h~  429 (461)
T KOG4199|consen  357 LCLR----SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKA---NHE  429 (461)
T ss_pred             HHhc----CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHh---cCc
Confidence            7642    47999999999999999999985543   8999999999998766655444444456666522222   256


Q ss_pred             cHHHHHHHHHHHH
Q 041643          548 ELRDLFAQAIYHL  560 (576)
Q Consensus       548 ~~~~l~~~a~~~l  560 (576)
                      +-++....|+.-|
T Consensus       430 tce~~akaALRDL  442 (461)
T KOG4199|consen  430 TCEAAAKAALRDL  442 (461)
T ss_pred             cHHHHHHHHHHhc
Confidence            6666666665543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.93  E-value=1.1e-07  Score=113.06  Aligned_cols=241  Identities=19%  Similarity=0.150  Sum_probs=156.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHH
Q 041643          165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVD  244 (576)
Q Consensus       165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~  244 (576)
                      -.++..|+..++..|..|+..|..+.           ..+.+|.|+++|++.+ +.++..|+.+|..+.....       
T Consensus       624 ~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~-------  684 (897)
T PRK13800        624 AELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP-------  684 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC-------
Confidence            34567778888888888888877553           2346888899887777 8888888888887753211       


Q ss_pred             cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643          245 VLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE  324 (576)
Q Consensus       245 ~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~  324 (576)
                        ..+.|...|.++++.++..|+.+|..+...+            ...|+..|..+.    +  .+...++..+..... 
T Consensus       685 --~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d----~--~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        685 --PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPD----H--RVRIEAVRALVSVDD-  743 (897)
T ss_pred             --chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCC----H--HHHHHHHHHHhcccC-
Confidence              2357778888888888888888887765222            234566665331    1  111112222111100 


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhH
Q 041643          325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAA  404 (576)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~  404 (576)
                                           .+.+......+|++|    +..++.+|..+..+..                        
T Consensus       744 ---------------------~~~l~~~l~D~~~~V----R~~aa~aL~~~~~~~~------------------------  774 (897)
T PRK13800        744 ---------------------VESVAGAATDENREV----RIAVAKGLATLGAGGA------------------------  774 (897)
T ss_pred             ---------------------cHHHHHHhcCCCHHH----HHHHHHHHHHhccccc------------------------
Confidence                                 011112223345554    4677888877743311                        


Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 041643          405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSK  484 (576)
Q Consensus       405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~  484 (576)
                       ..++.|++++.+.+ +.++..|+.+||++...     ...+++|+..|++.+..|+..|+++|+.+.+.          
T Consensus       775 -~~~~~L~~ll~D~d-~~VR~aA~~aLg~~g~~-----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~----------  837 (897)
T PRK13800        775 -PAGDAVRALTGDPD-PLVRAAALAALAELGCP-----PDDVAAATAALRASAWQVRQGAARALAGAAAD----------  837 (897)
T ss_pred             -hhHHHHHHHhcCCC-HHHHHHHHHHHHhcCCc-----chhHHHHHHHhcCCChHHHHHHHHHHHhcccc----------
Confidence             12566778887765 88888899999888421     23457788889888889999999999887532          


Q ss_pred             HHHHCCCcHhHHHhhccChh-HHHHHHHHHHHH
Q 041643          485 AIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYL  516 (576)
Q Consensus       485 ~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~l  516 (576)
                           ..+++|+.+|+..+. |+..|+.+|..+
T Consensus       838 -----~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        838 -----VAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             -----chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence                 245888999987776 888888888765

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.86  E-value=2.3e-07  Score=98.02  Aligned_cols=295  Identities=15%  Similarity=0.129  Sum_probs=186.2

Q ss_pred             HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcC---C----ChhHHHHHHH
Q 041643          197 RKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGE---A----PVKVQVAVAN  268 (576)
Q Consensus       197 ~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s---~----~~~vq~~Aa~  268 (576)
                      ++.-+++|.+.+|.++..+++ .++-+..-+||+|++. +.|+|.++.+.||-..++++|+.   .    +++.-..+.+
T Consensus        80 ~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g  158 (604)
T KOG4500|consen   80 RNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFG  158 (604)
T ss_pred             HHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHH
Confidence            344456889999999999987 8899999999999999 57899999999998888888853   1    1344455677


Q ss_pred             HHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhh------HHHHHHhhhccccccccccCCCCCCCCCC
Q 041643          269 LVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKT------TIHSLVQMKKEMTEKSTNVTNNSDGSSRG  342 (576)
Q Consensus       269 aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~------si~~~v~~~~~~~~~~~~~~~~~~~~~~~  342 (576)
                      .|.|-.-++.+.|..+.+.|+++.|+.++.-+-    +.+....+      .+-+.++-.-   ...+        ...+
T Consensus       159 ~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~----qNaa~~e~ll~~f~nlls~~~e~~---~~~~--------~d~s  223 (604)
T KOG4500|consen  159 VLHNYILDSRELRAQVADAGVLNTLAITYWIDW----QNAALTEKLLAPFFNLLSFVCEML---YPFC--------KDCS  223 (604)
T ss_pred             HHHHhhCCcHHHHHHHHhcccHHHHHHHhhccc----ccHHHHHHHHhccccHHHHHHHhh---hhhh--------ccch
Confidence            788877788899999999999999999986431    10000000      0111111000   0000        0000


Q ss_pred             CCCCC-CcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCCh
Q 041643          343 GHGQH-YNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDA  421 (576)
Q Consensus       343 ~~g~~-~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~  421 (576)
                         +. .+.+..   -..++....+++-.-|.+.+.++.-....++                 .|.++-++.++++-++.
T Consensus       224 ---l~~~l~~ll---~~~v~~d~~eM~feila~~aend~Vkl~la~-----------------~gl~e~~~~lv~~~k~~  280 (604)
T KOG4500|consen  224 ---LVFMLLQLL---PSMVREDIDEMIFEILAKAAENDLVKLSLAQ-----------------NGLLEDSIDLVRNMKDF  280 (604)
T ss_pred             ---HHHHHHHHH---HHhhccchhhHHHHHHHHHhcCcceeeehhh-----------------cchHHHHHHHHHhcccc
Confidence               00 000000   0000011235677777777765432211121                 23555566665542111


Q ss_pred             hhHHHHHH---HHHHH---hcCCchh------hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHC
Q 041643          422 MLQTPAIR---SIGCL---AKTFPAK------EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEF  489 (576)
Q Consensus       422 ~lq~~a~~---aLgnL---a~~~~~~------~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~  489 (576)
                      .-.+-.+.   .++.+   --++.+.      +.++...++.-+++.+.+.+..++.||+||+-.     ++|+..+++.
T Consensus       281 t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-----D~~ci~~v~~  355 (604)
T KOG4500|consen  281 TKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR-----DDICIQLVQK  355 (604)
T ss_pred             cchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc-----chHHHHHHHH
Confidence            11111111   11111   0011111      112677888888999999999999999999954     4889999999


Q ss_pred             CCcHhHHHhhcc-----Chh-HHHHHHHHHHHHhcccCchHHHHhccchhhH
Q 041643          490 DGVPPLMRLLKI-----SDR-AQVHGLVFLCYLALSAGNSKALEQARALNAL  535 (576)
Q Consensus       490 ggi~~Lv~LL~~-----~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~L  535 (576)
                      |-+..|+.+|..     |+. .|..++.+|.++...++|...+.++|+...+
T Consensus       356 ~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaI  407 (604)
T KOG4500|consen  356 DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAI  407 (604)
T ss_pred             HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHH
Confidence            999999999853     223 5778999999999999999999999988764

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=2.8e-06  Score=87.69  Aligned_cols=336  Identities=14%  Similarity=0.159  Sum_probs=200.7

Q ss_pred             hccccccHHHHHHHHHhhhcchHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHH-HHHHHHHHhhc
Q 041643          114 SITTNADFKKVFSLLESSIGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVD-AANELASLARD  192 (576)
Q Consensus       114 ~i~~~~~l~~l~~~L~~~~~~~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~-AA~~L~~La~~  192 (576)
                      .+.|..+-+..+.++++.-++++-++.-+.-+ ...+-|.      |.+.+.++-.-+.     +|.+ -..-|-+|+..
T Consensus        22 ~m~peea~~e~I~qfe~qgi~l~nIik~~sv~-~~~~qp~------i~~~~~~i~e~i~-----~~~~E~s~ll~~l~d~   89 (461)
T KOG4199|consen   22 SMTPSEAKEETIKQFEAQGINLANIIKDLSVN-PQTGQPV------INETVDKIKEHIG-----QKLEETTELLEQLADE   89 (461)
T ss_pred             hcCccccchHHHHHHHhccCcccccccccCCC-CCCCCcc------HHHhHHHHHHHHH-----hhhHHHHHHHHHHHHH
Confidence            34577888888999988777776554433211 1111122      3333322211111     2221 12223333311


Q ss_pred             ---CcccHHHHHhcCCHHHHHHHHcc---CCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhc--CCChhHHH
Q 041643          193 ---NNRNRKIIVEEGGILPLLKLLKE---AASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLG--EAPVKVQV  264 (576)
Q Consensus       193 ---~~~~~~~I~~~GgIppLV~LL~~---g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~--s~~~~vq~  264 (576)
                         +...|..-...|+.|.++-+++.   ++ ...-+.+..||..+.   +.+..+.++-|...++++|.  +.+.++--
T Consensus        90 ck~~~A~r~la~~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt---~~qpdl~da~g~~vvv~lL~~~~~~~dlt~  165 (461)
T KOG4199|consen   90 CKKSLAHRVLAGKNGAHDALITLLELAESPN-ESVLKKSLEAINSLT---HKQPDLFDAEAMAVVLKLLALKVESEEVTL  165 (461)
T ss_pred             HhhhHHHHHHhccCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhh---cCCcchhccccHHHHHHHHhcccchHHHHH
Confidence               11122233456777777776653   33 445566666665554   45667888999999999994  34556655


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCC
Q 041643          265 AVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGH  344 (576)
Q Consensus       265 ~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  344 (576)
                      .....+..-+-.++.+|+.|.+.++.+.+.+.|..+.                                           
T Consensus       166 ~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~g-------------------------------------------  202 (461)
T KOG4199|consen  166 LTLQWLQKACIMHEVNRQLFMELKILELILQVLNREG-------------------------------------------  202 (461)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccC-------------------------------------------
Confidence            5555566556667899999999999888877664220                                           


Q ss_pred             CCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc---hhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCCh
Q 041643          345 GQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL---WSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDA  421 (576)
Q Consensus       345 g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I---avae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~  421 (576)
                            +     +.-|     ..+.||+..|...++-++   .+.++   -|. .      +-.++..-|++.+.-.-+|
T Consensus       203 ------k-----~~~V-----Rel~~a~r~l~~dDDiRV~fg~ah~h---Ar~-i------a~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  203 ------K-----TRTV-----RELYDAIRALLTDDDIRVVFGQAHGH---ART-I------AKEGILTALTEALQAGIDP  256 (461)
T ss_pred             ------c-----cHHH-----HHHHHHHHHhcCCCceeeecchhhHH---HHH-H------HHhhhHHHHHHHHHccCCc
Confidence                  0     1111     357788888876543332   11111   111 1      1112344455555544457


Q ss_pred             hhHHHHHHHHHHHhcCCch----hhhCcHHHHHHhhcC-CCHHHH---HHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcH
Q 041643          422 MLQTPAIRSIGCLAKTFPA----KEKRMIGPLVALLSN-RNVDVA---TEAVIALSKFVSPDNFNRSEHSKAIIEFDGVP  493 (576)
Q Consensus       422 ~lq~~a~~aLgnLa~~~~~----~~~~~I~~LV~LL~~-~~~~V~---~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~  493 (576)
                      +++.....+|+.||-..+-    .+.|++..|++++++ ++..++   +++.-.|..+|.+     +..+..|++.||.+
T Consensus       257 ~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-----DsvKs~IV~~gg~~  331 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-----DSVKSTIVEKGGLD  331 (461)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-----CchHHHHHHhcChH
Confidence            8888888999999753221    356999999999976 444444   6677788888853     36688999999999


Q ss_pred             hHHHhhc-cC-hh-HHHHHHHHHHHHhcccCc-hHHHHhccchhhH-hhhh
Q 041643          494 PLMRLLK-IS-DR-AQVHGLVFLCYLALSAGN-SKALEQARALNAL-EGAA  539 (576)
Q Consensus       494 ~Lv~LL~-~~-d~-vq~~A~~~L~~lal~~~~-~~~l~~~~~l~~L-e~~~  539 (576)
                      .+++|+. +. ++ +-..++.++|.+++..|+ +..+.+.|+-..- ++++
T Consensus       332 ~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmk  382 (461)
T KOG4199|consen  332 KIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMK  382 (461)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHH
Confidence            9999874 44 44 444566677888887776 4666777776653 4665

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.80  E-value=3.4e-06  Score=94.20  Aligned_cols=293  Identities=15%  Similarity=0.196  Sum_probs=203.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcC
Q 041643          168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVL  246 (576)
Q Consensus       168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~G  246 (576)
                      +..|..++.+....|+..|..+++. +...+.+++.+.++.|.+++...+ +..+...-..+.++++. ++....+++.|
T Consensus       125 ~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~-~~vR~Rv~el~v~i~~~S~~~~~~~~~sg  202 (503)
T PF10508_consen  125 IQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSS-DIVRCRVYELLVEIASHSPEAAEAVVNSG  202 (503)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence            6788999999999999999999986 567778889999999999998877 88999999999999985 55667788899


Q ss_pred             CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccc
Q 041643          247 GVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMT  326 (576)
Q Consensus       247 avp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~  326 (576)
                      .++.+++.|.+.+.-+|..+...|..||. .+.....+.+.|+++.|+.++....  ++++                   
T Consensus       203 ll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~--~dp~-------------------  260 (503)
T PF10508_consen  203 LLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSE--EDPR-------------------  260 (503)
T ss_pred             HHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccc--cCCc-------------------
Confidence            99999999999888899999999999998 6788889999999999999996432  1110                   


Q ss_pred             ccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHH
Q 041643          327 EKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKA  406 (576)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~  406 (576)
                                  +  +  ++-.         |        .......+++.-.+..        .+.         ..+.
T Consensus       261 ------------~--~--~~~l---------~--------g~~~f~g~la~~~~~~--------v~~---------~~p~  290 (503)
T PF10508_consen  261 ------------L--S--SLLL---------P--------GRMKFFGNLARVSPQE--------VLE---------LYPA  290 (503)
T ss_pred             ------------c--c--chhh---------h--------hHHHHHHHHHhcChHH--------HHH---------HHHH
Confidence                        0  0  0000         0        0112223333211110        111         1135


Q ss_pred             HHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhh----------CcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCC
Q 041643          407 VLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEK----------RMIGPLVALLSNRNVDVATEAVIALSKFVSPDN  476 (576)
Q Consensus       407 vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~----------~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n  476 (576)
                      +++.|..++.+.| +..+..|+.++|+++.+....+.          .++..+-...+++..+++..+-.|++++-..++
T Consensus       291 ~~~~l~~~~~s~d-~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~  369 (503)
T PF10508_consen  291 FLERLFSMLESQD-PTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT  369 (503)
T ss_pred             HHHHHHHHhCCCC-hhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence            6677777777765 78888999999999976543211          234555555678888999999999999943332


Q ss_pred             CCCHHHHHHHH-------HCCCcH-hHHHhhccC-hhHHHHHHHHHHHHhcccCchHHHH-hccchhhH
Q 041643          477 FNRSEHSKAII-------EFDGVP-PLMRLLKIS-DRAQVHGLVFLCYLALSAGNSKALE-QARALNAL  535 (576)
Q Consensus       477 ~~~~~~~~~Iv-------~~ggi~-~Lv~LL~~~-d~vq~~A~~~L~~lal~~~~~~~l~-~~~~l~~L  535 (576)
                      ....+..-.+.       ..+... .++.+++.. .+++..++.+|..++.+.--...+. ..|.++.|
T Consensus       370 ~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~l  438 (503)
T PF10508_consen  370 DRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYL  438 (503)
T ss_pred             CCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhh
Confidence            21223222222       233333 566777665 4488889998888876654444444 45555555

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.74  E-value=6.2e-07  Score=106.58  Aligned_cols=241  Identities=17%  Similarity=0.157  Sum_probs=159.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643          164 VWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIV  243 (576)
Q Consensus       164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv  243 (576)
                      +..++..|...+...|..|+.+|..+... .         ...+.|...|++.+ +.++..|+.+|..+..         
T Consensus       654 ~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~-~---------~~~~~L~~~L~~~d-~~VR~~A~~aL~~~~~---------  713 (897)
T PRK13800        654 GPALVAALGDGAAAVRRAAAEGLRELVEV-L---------PPAPALRDHLGSPD-PVVRAAALDVLRALRA---------  713 (897)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhc-c---------CchHHHHHHhcCCC-HHHHHHHHHHHHhhcc---------
Confidence            34457888888999999999999877432 1         12468889998877 9999999999988752         


Q ss_pred             HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhc
Q 041643          244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK  323 (576)
Q Consensus       244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~  323 (576)
                        |....|+..|++.+..++..|+.+|+.+-              ..+.|..+|..+.      ..+.......+.....
T Consensus       714 --~~~~~l~~~L~D~d~~VR~~Av~aL~~~~--------------~~~~l~~~l~D~~------~~VR~~aa~aL~~~~~  771 (897)
T PRK13800        714 --GDAALFAAALGDPDHRVRIEAVRALVSVD--------------DVESVAGAATDEN------REVRIAVAKGLATLGA  771 (897)
T ss_pred             --CCHHHHHHHhcCCCHHHHHHHHHHHhccc--------------CcHHHHHHhcCCC------HHHHHHHHHHHHHhcc
Confidence              22456788899999999999999988752              1234556664331      0110111111111111


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchh
Q 041643          324 EMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPA  403 (576)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a  403 (576)
                      .                 ...+.+.+......+|+.||    ..|+.+|..+....                        
T Consensus       772 ~-----------------~~~~~~~L~~ll~D~d~~VR----~aA~~aLg~~g~~~------------------------  806 (897)
T PRK13800        772 G-----------------GAPAGDAVRALTGDPDPLVR----AAALAALAELGCPP------------------------  806 (897)
T ss_pred             c-----------------cchhHHHHHHHhcCCCHHHH----HHHHHHHHhcCCcc------------------------
Confidence            0                 00001111122223466654    67888887763210                        


Q ss_pred             HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHH
Q 041643          404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHS  483 (576)
Q Consensus       404 ~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~  483 (576)
                        .++..|+..|.+.+ +.+...|+.+||.+.      ....+++|+.+|++.+..|+++|+++|+++..+     ++  
T Consensus       807 --~~~~~l~~aL~d~d-~~VR~~Aa~aL~~l~------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~-----~~--  870 (897)
T PRK13800        807 --DDVAAATAALRASA-WQVRQGAARALAGAA------ADVAVPALVEALTDPHLDVRKAAVLALTRWPGD-----PA--  870 (897)
T ss_pred             --hhHHHHHHHhcCCC-hHHHHHHHHHHHhcc------ccchHHHHHHHhcCCCHHHHHHHHHHHhccCCC-----HH--
Confidence              13355677777654 789999999999874      234689999999999999999999999987311     12  


Q ss_pred             HHHHHCCCcHhHHHhhccChh-HHHHHHHHHH
Q 041643          484 KAIIEFDGVPPLMRLLKISDR-AQVHGLVFLC  514 (576)
Q Consensus       484 ~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~  514 (576)
                             ..+.|.++|+..|. |+..|..+|.
T Consensus       871 -------a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        871 -------ARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             -------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence                   35667788887777 8888888763

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=98.73  E-value=4e-07  Score=106.75  Aligned_cols=264  Identities=18%  Similarity=0.180  Sum_probs=182.2

Q ss_pred             HHHH-HHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccC-----------CChHHHHHHHHHHHHhhcC-CchHHHHH
Q 041643          177 KSRV-DAANELASLARDNNRNRKIIVEEGGILPLLKLLKEA-----------ASPDAQTAAANALFNIATD-QETVRFIV  243 (576)
Q Consensus       177 e~k~-~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g-----------~~~~~q~~AA~AL~nLa~~-~~~~~~iv  243 (576)
                      +-+. .|.++|.-++- ++++|...-+-||+..+-+||..+           -+...+..|+.||+||+-. ..|+..+-
T Consensus       312 ~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC  390 (2195)
T KOG2122|consen  312 EHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC  390 (2195)
T ss_pred             chhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            3344 45555666655 589999999999988888877421           1134578999999999984 45666655


Q ss_pred             -HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhh
Q 041643          244 -DVLGVPIIVSVLGEAPVKVQVAVANLVARMAEL-DSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQM  321 (576)
Q Consensus       244 -~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~-~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~  321 (576)
                       .-|.+..+|.-|.+.+++++...|..|.||+=. +...+..+.+.|-+-.|+..--.                     .
T Consensus       391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~---------------------~  449 (2195)
T KOG2122|consen  391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR---------------------N  449 (2195)
T ss_pred             hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH---------------------h
Confidence             578899999999999999999999999999843 44566666666766666553210                     0


Q ss_pred             hccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc
Q 041643          322 KKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS  401 (576)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s  401 (576)
                      .                              +|+   -    + ....-|||||+....+|-+      ++    +    
T Consensus       450 ~------------------------------kEs---T----L-KavLSALWNLSAHcteNKA------~i----C----  477 (2195)
T KOG2122|consen  450 K------------------------------KES---T----L-KAVLSALWNLSAHCTENKA------EI----C----  477 (2195)
T ss_pred             c------------------------------ccc---h----H-HHHHHHHhhhhhcccccch------hh----h----
Confidence            0                              000   0    1 2567899999987776621      11    1    


Q ss_pred             hhHHHHHHHHHHHhhhcC---ChhhHHHHHHHHHHHhcC----Cch----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHh
Q 041643          402 PAAKAVLDQLLRLIHEES---DAMLQTPAIRSIGCLAKT----FPA----KEKRMIGPLVALLSNRNVDVATEAVIALSK  470 (576)
Q Consensus       402 ~a~~~vV~~Ll~lL~~~~---~~~lq~~a~~aLgnLa~~----~~~----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~n  470 (576)
                       +..|.+..|+..|....   .-.+.+.|-+.|-|....    .+-    ++.+.|..|+.+|++.+.-|.-+++.+|+|
T Consensus       478 -aVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWN  556 (2195)
T KOG2122|consen  478 -AVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWN  556 (2195)
T ss_pred             -cccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhh
Confidence             12244556666665331   123445555566555432    111    345678999999999999999999999999


Q ss_pred             hcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcc
Q 041643          471 FVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALS  519 (576)
Q Consensus       471 la~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~  519 (576)
                      +..-    +++.+++|.|.|+++.|..|+++..- +-.-++.+|.|+..+
T Consensus       557 LSAR----~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  557 LSAR----SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             hhcC----CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence            9753    37889999999999999999998766 555566677788433

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=98.61  E-value=4.2e-07  Score=106.64  Aligned_cols=224  Identities=16%  Similarity=0.149  Sum_probs=165.7

Q ss_pred             HHHHHHHHHHHHHhhcCcccHHHHH-hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCc--hHHHHHHcCCHHHHHH
Q 041643          177 KSRVDAANELASLARDNNRNRKIIV-EEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE--TVRFIVDVLGVPIIVS  253 (576)
Q Consensus       177 e~k~~AA~~L~~La~~~~~~~~~I~-~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~--~~~~iv~~Gavp~LV~  253 (576)
                      ..|..|+.+|.||.-.+..|+..+. ..|.+..+|..|.+.. ++.+.--|..|.||+...|  .++.+-+.|-|..|+.
T Consensus       366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~  444 (2195)
T KOG2122|consen  366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP-EELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA  444 (2195)
T ss_pred             HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence            4567899999999887666776654 6677999999999988 7888888899999999654  4667778999999998


Q ss_pred             hh-cCCChhHHHHHHHHHHHHhcCChHHHHHHHhc-CCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccc
Q 041643          254 VL-GEAPVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTN  331 (576)
Q Consensus       254 lL-~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~-g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~  331 (576)
                      .- +...+........||+||+.++.+++..|..- |++..||.+|.-+.   .++                        
T Consensus       445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~---qs~------------------------  497 (2195)
T KOG2122|consen  445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEG---QSN------------------------  497 (2195)
T ss_pred             HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccC---Ccc------------------------
Confidence            74 55555556678889999999999999888775 99999999997541   010                        


Q ss_pred             cCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhccc-chHHHHhhhccCchhHHHHHHH
Q 041643          332 VTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAES-NAELRRSAFKTNSPAAKAVLDQ  410 (576)
Q Consensus       332 ~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~-~~~lrr~a~k~~s~a~~~vV~~  410 (576)
                          -..+..++|||-.                         |.+.    -|++-|. ...|||+          ..+..
T Consensus       498 ----tLaIIEsaGGILR-------------------------NVSS----~IAt~E~yRQILR~~----------NCLq~  534 (2195)
T KOG2122|consen  498 ----TLAIIESAGGILR-------------------------NVSS----LIATCEDYRQILRRH----------NCLQT  534 (2195)
T ss_pred             ----hhhhhhcCccHHH-------------------------HHHh----HhhccchHHHHHHHh----------hHHHH
Confidence                0001223344442                         2211    0222221 2246664          45778


Q ss_pred             HHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          411 LLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       411 Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                      |++.|+++. -.+..+++++|+||.-..+.     ++.|+|+-|-+|+.+++-.+.+-++.||.|+-
T Consensus       535 LLQ~LKS~S-LTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl  600 (2195)
T KOG2122|consen  535 LLQHLKSHS-LTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL  600 (2195)
T ss_pred             HHHHhhhcc-eEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence            889998875 78889999999999654332     35588999999999999999999999999986

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.59  E-value=3.6e-06  Score=91.34  Aligned_cols=268  Identities=16%  Similarity=0.147  Sum_probs=167.9

Q ss_pred             hHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCC-ChHHHHHHHHHHHHhhcCC
Q 041643          159 PILAWVWSFISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAA-SPDAQTAAANALFNIATDQ  236 (576)
Q Consensus       159 ~i~~~v~~li~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~-~~~~q~~AA~AL~nLa~~~  236 (576)
                      ....+...+...|+++ +.+.+.-++.+|..|.+. +++|..+.+.+|+++|+.+|+... +...|.++.-+++-|+-++
T Consensus       140 ~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~  218 (429)
T cd00256         140 DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNP  218 (429)
T ss_pred             HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccH
Confidence            3344443356777776 466777888899999886 789999999999999999998754 3688999999999999988


Q ss_pred             chHHHHHHcCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCC------hHHHHHHHhcCCchhHHHhhccccccCCCcch
Q 041643          237 ETVRFIVDVLGVPIIVSVLGE-APVKVQVAVANLVARMAELD------SIAQEEFVRENVTRSLISLLCMDIALDLPKPE  309 (576)
Q Consensus       237 ~~~~~iv~~Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~------~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i  309 (576)
                      +....+.+.|.||.|+++++. ..+.+...+..++.|+....      ..+...+...| +++++..|...... +. .+
T Consensus       219 ~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~-l~~~l~~L~~rk~~-De-dL  295 (429)
T cd00256         219 HAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK-VLKTLQSLEQRKYD-DE-DL  295 (429)
T ss_pred             HHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC-hHHHHHHHhcCCCC-cH-HH
Confidence            877888889999999999976 45888888999999999642      12334455555 46677777644210 00 01


Q ss_pred             hh-hhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCccc--chhc
Q 041643          310 SA-KTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLS--LWSA  386 (576)
Q Consensus       310 ~~-~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~--Iava  386 (576)
                      .. -..++..+.-...                           .....|.- +.+++.  -.--|    ++...  .-=.
T Consensus       296 ~edl~~L~e~L~~~~k---------------------------~ltsfD~Y-~~El~s--g~L~W----Sp~H~se~FW~  341 (429)
T cd00256         296 TDDLKFLTEELKNSVQ---------------------------DLSSFDEY-KSELRS--GRLHW----SPVHKSEKFWR  341 (429)
T ss_pred             HHHHHHHHHHHHHHHH---------------------------HcCCHHHH-HHHHhc--CCccC----CCCCCCchHHH
Confidence            10 0011111100000                           00000100 000000  00001    11110  0000


Q ss_pred             ccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHH
Q 041643          387 ESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVA  461 (576)
Q Consensus       387 e~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~  461 (576)
                      |.   .+  .|+.+.   -.++..|+.+|..++++....-|+-=||.+++..|..     +-|+=..+-+||.+.+++|+
T Consensus       342 EN---~~--kf~~~~---~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr  413 (429)
T cd00256         342 EN---AD--RLNEKN---YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVR  413 (429)
T ss_pred             HH---HH--HHHhcc---hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHH
Confidence            00   00  021111   1467889999976666777778888899999987642     22444667889999999999


Q ss_pred             HHHHHHHHhhc
Q 041643          462 TEAVIALSKFV  472 (576)
Q Consensus       462 ~eAa~AL~nla  472 (576)
                      .+|-.|+.++-
T Consensus       414 ~eAL~avQklm  424 (429)
T cd00256         414 YEALLAVQKLM  424 (429)
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=2.5e-05  Score=83.78  Aligned_cols=345  Identities=15%  Similarity=0.147  Sum_probs=215.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643          164 VWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIV  243 (576)
Q Consensus       164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv  243 (576)
                      |.-+|..|...+.+.-.--..-|.-|+-. ++|+....+.|.|..|++|..... ++.......-|+|++-++..+..||
T Consensus       306 V~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD~glr~KMv  383 (791)
T KOG1222|consen  306 VAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFDSGLRPKMV  383 (791)
T ss_pred             HHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccccccccHHHh
Confidence            33345555554433333322334455554 678899999999999999999988 9999999999999999999999999


Q ss_pred             HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhc
Q 041643          244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK  323 (576)
Q Consensus       244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~  323 (576)
                      ..|-+|.|+.+|.+.+-  ..-|...+..++. +...+..++...+|+.|+..+-+++   .++--....++.-.++.++
T Consensus       384 ~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~---~~~vdl~lia~ciNl~lnk  457 (791)
T KOG1222|consen  384 NGGLLPHLASLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGT---GSEVDLALIALCINLCLNK  457 (791)
T ss_pred             hccchHHHHHHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcC---CceecHHHHHHHHHHHhcc
Confidence            99999999999977643  2446666777775 4688999999999999999776654   2210000112211122222


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCcc-cccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCch
Q 041643          324 EMTEKSTNVTNNSDGSSRGGHGQHYNK-KDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP  402 (576)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~  402 (576)
                      -.          .+.+. .+.|+..+. +..-+.|+        .-...+.+++....          ..+. -|.    
T Consensus       458 RN----------aQlvc-eGqgL~~LM~ra~k~~D~--------lLmK~vRniSqHeg----------~tqn-~Fi----  503 (791)
T KOG1222|consen  458 RN----------AQLVC-EGQGLDLLMERAIKSRDL--------LLMKVVRNISQHEG----------ATQN-MFI----  503 (791)
T ss_pred             cc----------ceEEe-cCcchHHHHHHHhcccch--------HHHHHHHHhhhccc----------hHHH-HHH----
Confidence            11          11111 123444321 11222343        23455666664311          1111 121    


Q ss_pred             hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcC--CCHHHHHHHHHHHHhhcCCC
Q 041643          403 AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSN--RNVDVATEAVIALSKFVSPD  475 (576)
Q Consensus       403 a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~--~~~~V~~eAa~AL~nla~~~  475 (576)
                         .-|.-|..++++.+++..-..|+++++||.-+.-+     .+.+.||-+-..|..  .+.+.+-+...+++-++++.
T Consensus       504 ---dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~  580 (791)
T KOG1222|consen  504 ---DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL  580 (791)
T ss_pred             ---HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh
Confidence               34677888888777678888999999999754332     234678888888864  46678889999999998764


Q ss_pred             CCCCHHHHHHHHHCCCcHhHHHhhccC---hh--HHHH-HHHHHHHHhcccCchHHHHhccchhh-HhhhhcccCCCCCc
Q 041643          476 NFNRSEHSKAIIEFDGVPPLMRLLKIS---DR--AQVH-GLVFLCYLALSAGNSKALEQARALNA-LEGAARTVLPQHPE  548 (576)
Q Consensus       476 n~~~~~~~~~Iv~~ggi~~Lv~LL~~~---d~--vq~~-A~~~L~~lal~~~~~~~l~~~~~l~~-Le~~~~~~~~q~~~  548 (576)
                           .-.+.+..+|.|+.|++||+..   |+  +|.- .+.   -+..|--..+-+.+.-.+++ |-.+-+-   -+.+
T Consensus       581 -----~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~---Q~l~He~tr~~miket~~~AylIDLMHD---kN~e  649 (791)
T KOG1222|consen  581 -----DCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFL---QFLKHELTRRLMIKETALGAYLIDLMHD---KNAE  649 (791)
T ss_pred             -----HHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHH---HHHHHHHHHHHHHhhccchHHHHHHHhc---ccHH
Confidence                 3356777899999999999853   33  4542 222   23345444455555554544 2211100   0135


Q ss_pred             HHHHHHHHHHHHHhhc
Q 041643          549 LRDLFAQAIYHLTLYQ  564 (576)
Q Consensus       549 ~~~l~~~a~~~l~~y~  564 (576)
                      ++++..-++.|+..|-
T Consensus       650 iRkVCDn~LdIiae~d  665 (791)
T KOG1222|consen  650 IRKVCDNALDIIAEHD  665 (791)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            6666777777776664

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.55  E-value=7.9e-08  Score=70.04  Aligned_cols=41  Identities=49%  Similarity=0.690  Sum_probs=38.3

Q ss_pred             CcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc
Q 041643          193 NNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT  234 (576)
Q Consensus       193 ~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~  234 (576)
                      |+++++.|++.|+||+|++||++++ ++.|++|+|||+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~-~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPD-PEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSS-HHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCC-HHHHHHHHHHHHHHhC
Confidence            4689999999999999999999888 9999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.41  E-value=1.2e-06  Score=79.86  Aligned_cols=131  Identities=18%  Similarity=0.284  Sum_probs=113.4

Q ss_pred             hHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchH
Q 041643          161 LAWVWSFISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETV  239 (576)
Q Consensus       161 ~~~v~~li~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~  239 (576)
                      +.++..+|.-.++- +.|+|++-.+.|.|.|-+ +-|...+.+..++.-+|.-|.+.+ ....+-+..+|+|++-++.|.
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~d~~n~   92 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCLDKTNA   92 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhccChHHH
Confidence            45666677766654 789999999999999986 889999999999999999999999 999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhh
Q 041643          240 RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL  297 (576)
Q Consensus       240 ~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL  297 (576)
                      +.|+++|++|.++..|+++++.+...++.++..|....-..|+.+..    |+.|+.+
T Consensus        93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v  146 (173)
T KOG4646|consen   93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTV  146 (173)
T ss_pred             HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHH
Confidence            99999999999999999999999999999999999766666776654    4455544

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.32  E-value=7.3e-07  Score=64.91  Aligned_cols=41  Identities=27%  Similarity=0.346  Sum_probs=38.4

Q ss_pred             CCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 041643          235 DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAE  275 (576)
Q Consensus       235 ~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~  275 (576)
                      +++++..++++|+||+|+++|++++.++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999999999999999983

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.31  E-value=2.9e-05  Score=81.44  Aligned_cols=220  Identities=15%  Similarity=0.155  Sum_probs=145.7

Q ss_pred             cCCHHHHHHHHHHHHHHhhcCcccHHHHHh------cCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcC
Q 041643          173 MGQIKSRVDAANELASLARDNNRNRKIIVE------EGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVL  246 (576)
Q Consensus       173 ~G~~e~k~~AA~~L~~La~~~~~~~~~I~~------~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G  246 (576)
                      +.+.+........+..+..+++...+.+.+      ..-..||+++|.+++ .-.+..|+..|..|....+.+..-...+
T Consensus        68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~~~~~~~~~~~~  146 (312)
T PF03224_consen   68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQGPKRSEKLVKE  146 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcCCccccchHHH
Confidence            456777778888888888876655555544      125899999999888 9999999999999998665555444467


Q ss_pred             CHHHHHHhhcC----CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhh
Q 041643          247 GVPIIVSVLGE----APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK  322 (576)
Q Consensus       247 avp~LV~lL~s----~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~  322 (576)
                      .++.+++.|++    .+.+++..++.+|.+|.. .+.+|..|.+.|++++|+.+|+...  ..                 
T Consensus       147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~--~~-----------------  206 (312)
T PF03224_consen  147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQA--TN-----------------  206 (312)
T ss_dssp             HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH------------------------
T ss_pred             HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhc--cc-----------------
Confidence            88999999875    345677889999999995 5899999999999999999995210  00                 


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCch
Q 041643          323 KEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP  402 (576)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~  402 (576)
                                                        +.....+++=.+..++|-|+.....    +   ..+.+        
T Consensus       207 ----------------------------------~~~~~~Ql~Y~~ll~lWlLSF~~~~----~---~~~~~--------  237 (312)
T PF03224_consen  207 ----------------------------------SNSSGIQLQYQALLCLWLLSFEPEI----A---EELNK--------  237 (312)
T ss_dssp             --------------------------------------HHHHHHHHHHHHHHHTTSHHH----H---HHHHT--------
T ss_pred             ----------------------------------CCCCchhHHHHHHHHHHHHhcCHHH----H---HHHhc--------
Confidence                                              0000113445799999999987421    1   11211        


Q ss_pred             hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch--hhh---CcHHHHHHhhcC---CCHHHHHHH
Q 041643          403 AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA--KEK---RMIGPLVALLSN---RNVDVATEA  464 (576)
Q Consensus       403 a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~--~~~---~~I~~LV~LL~~---~~~~V~~eA  464 (576)
                        +++|+.|+.+++....+++..-++.++-||....+.  ...   ..+++++..|..   +++++...-
T Consensus       238 --~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl  305 (312)
T PF03224_consen  238 --KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDL  305 (312)
T ss_dssp             --TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred             --cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence              237899999999887789999999999999876552  111   236777777754   466666543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.29  E-value=7.9e-05  Score=81.02  Aligned_cols=131  Identities=18%  Similarity=0.011  Sum_probs=98.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 041643          168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG  247 (576)
Q Consensus       168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga  247 (576)
                      +..|+.++.-....|+..|..|...+..+.......--...|...|+++++...+.-|+.+|..|...++.|..+.++++
T Consensus       107 l~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~  186 (429)
T cd00256         107 FNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADG  186 (429)
T ss_pred             HHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccC
Confidence            56777777777888888888887654332111111012335666677654478899999999999999999999999999


Q ss_pred             HHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhcc
Q 041643          248 VPIIVSVLGEA--PVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCM  299 (576)
Q Consensus       248 vp~LV~lL~s~--~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~  299 (576)
                      ++.|+.+|+..  ...++.++.-++.-|+... +..+...+.+.|+.|+++++.
T Consensus       187 v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~-~~~~~~~~~~~i~~l~~i~k~  239 (429)
T cd00256         187 VPTLVKLLSNATLGFQLQYQSIFCIWLLTFNP-HAAEVLKRLSLIQDLSDILKE  239 (429)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHHhccH-HHHHhhccccHHHHHHHHHHh
Confidence            99999999763  4578888999999898754 466667778999999999974

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=6.4e-05  Score=85.32  Aligned_cols=130  Identities=15%  Similarity=0.192  Sum_probs=97.7

Q ss_pred             HHHHHHhcC-CHHHHHHHHHHHHHHhh-cCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHH
Q 041643          166 SFISTIQMG-QIKSRVDAANELASLAR-DNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFI  242 (576)
Q Consensus       166 ~li~~L~~G-~~e~k~~AA~~L~~La~-~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~i  242 (576)
                      .++.-|+.. ++-.+.+|+-.|..+-. .|++.-..+--.-.||.||.||+...+.+.+-.|++||++|.. -|.....+
T Consensus       171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v  250 (1051)
T KOG0168|consen  171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV  250 (1051)
T ss_pred             HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence            345666655 55566777777765433 2332222221234589999999988669999999999999998 68999999


Q ss_pred             HHcCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhc
Q 041643          243 VDVLGVPIIVSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC  298 (576)
Q Consensus       243 v~~Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~  298 (576)
                      |++|+||.|++-|.. .-+++-+++..||-.|+..++.   .+.+.|+|-.-+..|.
T Consensus       251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylD  304 (1051)
T KOG0168|consen  251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLD  304 (1051)
T ss_pred             ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHH
Confidence            999999999987765 5689999999999999986653   5677888777766664

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=1.6e-05  Score=83.17  Aligned_cols=127  Identities=18%  Similarity=0.308  Sum_probs=115.5

Q ss_pred             cCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHH
Q 041643          173 MGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPII  251 (576)
Q Consensus       173 ~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~L  251 (576)
                      +-+.+.|+.|...|..+..+ -+|..-++..||.+||+.+|++++ ...++.|||.|+..+. +|.....+++.|+.+.|
T Consensus        94 s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            34889999999999999875 679999999999999999999988 9999999999999998 57889999999999999


Q ss_pred             HHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhcccc
Q 041643          252 VSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDI  301 (576)
Q Consensus       252 V~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t  301 (576)
                      +..|.+ ++..++..|..|++.+-.+.+..++.|...++...|...|.+++
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~  222 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN  222 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC
Confidence            999965 56788899999999999999999999999999999999998753

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.14  E-value=2.8e-05  Score=86.44  Aligned_cols=325  Identities=20%  Similarity=0.247  Sum_probs=184.0

Q ss_pred             CcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC
Q 041643          156 SNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD  235 (576)
Q Consensus       156 ~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~  235 (576)
                      ..+-+..++......|...++-.|..|+.++..+.+.+++   .+-.. -++.|.++|.+.+ +.++..|..++..+ ..
T Consensus       108 ~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~-~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  108 TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKD-PSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSS-HHHHHHHHHHHHHH-HC
T ss_pred             ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCc-chhHHHHHHHHHHH-cc
Confidence            3344455566667889999999999999999999876443   33333 5899999998888 99999999999999 22


Q ss_pred             CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHH
Q 041643          236 QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTI  315 (576)
Q Consensus       236 ~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si  315 (576)
                      ++.-..-.-...++.|.+++...++-.|......+..++...+...+.   ...++.+..+|++..     .++. -.++
T Consensus       182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~-----~~V~-~e~~  252 (526)
T PF01602_consen  182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSS-----PSVV-YEAI  252 (526)
T ss_dssp             THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHH-----HHHH-HHHH
T ss_pred             CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccc-----cHHH-HHHH
Confidence            221100111223455555557788888888888888888766555421   345677777776431     0111 0011


Q ss_pred             HHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc--------hhc-
Q 041643          316 HSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL--------WSA-  386 (576)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I--------ava-  386 (576)
                      ..+......... ..             ...+.+.+.....|++++    -.+..+|..++..+...+        .+. 
T Consensus       253 ~~i~~l~~~~~~-~~-------------~~~~~L~~lL~s~~~nvr----~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~  314 (526)
T PF01602_consen  253 RLIIKLSPSPEL-LQ-------------KAINPLIKLLSSSDPNVR----YIALDSLSQLAQSNPPAVFNQSLILFFLLY  314 (526)
T ss_dssp             HHHHHHSSSHHH-HH-------------HHHHHHHHHHTSSSHHHH----HHHHHHHHHHCCHCHHHHGTHHHHHHHHHC
T ss_pred             HHHHHhhcchHH-HH-------------hhHHHHHHHhhcccchhe----hhHHHHHHHhhcccchhhhhhhhhhheecC
Confidence            111111100000 00             000111111223344443    456666666654431111        222 


Q ss_pred             ccchHHHHhhhc-----cCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHH
Q 041643          387 ESNAELRRSAFK-----TNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVA  461 (576)
Q Consensus       387 e~~~~lrr~a~k-----~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~  461 (576)
                      +.+..+|+.++.     .+..-.+.+++.|+.++.+.++++++..++.+|+.++..++....-.+..++++|......+.
T Consensus       315 ~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~  394 (526)
T PF01602_consen  315 DDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVS  394 (526)
T ss_dssp             SSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCH
T ss_pred             CCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhcccccc
Confidence            334445554432     122224567888888885543477899999999999876654334466777777776666677


Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhcc-Chh-HHHHHHHHHHHHhcccCc
Q 041643          462 TEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKI-SDR-AQVHGLVFLCYLALSAGN  522 (576)
Q Consensus       462 ~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~-~d~-vq~~A~~~L~~lal~~~~  522 (576)
                      .++...+.++....    ++.+..+     ++.|++++.. .++ +...++|.++..+...++
T Consensus       395 ~~~~~~i~~ll~~~----~~~~~~~-----l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~  448 (526)
T PF01602_consen  395 NEIINVIRDLLSNN----PELREKI-----LKKLIELLEDISSPEALAAAIWILGEYGELIEN  448 (526)
T ss_dssp             CHHHHHHHHHHHHS----TTTHHHH-----HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred             chHHHHHHHHhhcC----hhhhHHH-----HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence            77777777765322    1223333     5566666654 223 555566666655444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.00089  Score=75.86  Aligned_cols=285  Identities=19%  Similarity=0.265  Sum_probs=204.3

Q ss_pred             HHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccC-CChHHHHHHHHHHHHhhcCCc---
Q 041643          163 WVWSFISTIQMGQ-IKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEA-ASPDAQTAAANALFNIATDQE---  237 (576)
Q Consensus       163 ~v~~li~~L~~G~-~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g-~~~~~q~~AA~AL~nLa~~~~---  237 (576)
                      .|-.++.++.+.+ .+.|.+|++.|-.+++   .||..++. -|.+||+..|+.+ .+++.-..+.-.+.++.++.+   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            4566688888886 6899999999999986   58888874 5899999999876 337888899999999998653   


Q ss_pred             ---h-----------HHH-HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhc-CChHHHHHHHhc-CCchhHHHhhccc
Q 041643          238 ---T-----------VRF-IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAE-LDSIAQEEFVRE-NVTRSLISLLCMD  300 (576)
Q Consensus       238 ---~-----------~~~-iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~-~~~~~r~~i~~~-g~I~~LV~LL~~~  300 (576)
                         +           .+. |-..+-|..++..+..-+-.|+..+...+.++-+ ..++.|+.+... -+|..||.+|+. 
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-  177 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-  177 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-
Confidence               1           223 3357789999999999889999999999988554 567888887665 778999999952 


Q ss_pred             cccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCc
Q 041643          301 IALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCL  380 (576)
Q Consensus       301 t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~  380 (576)
                           ++                                       .+               ++-.+..-|..|..+|.
T Consensus       178 -----sr---------------------------------------E~---------------IRNe~iLlL~eL~k~n~  198 (970)
T KOG0946|consen  178 -----SR---------------------------------------EP---------------IRNEAILLLSELVKDNS  198 (970)
T ss_pred             -----hh---------------------------------------hh---------------hchhHHHHHHHHHccCc
Confidence                 10                                       00               12245566677776654


Q ss_pred             ccchhcccchHHHH-hhhccCchhHHHHHHHHHHHhhhcC---ChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHH
Q 041643          381 LSLWSAESNAELRR-SAFKTNSPAAKAVLDQLLRLIHEES---DAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVA  451 (576)
Q Consensus       381 ~~Iavae~~~~lrr-~a~k~~s~a~~~vV~~Ll~lL~~~~---~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~  451 (576)
                      ..          ++ -+|       ....+.|..+++.+.   +.-+..-|+.-|-||-+....     ++.+.||.|.+
T Consensus       199 ~I----------QKlVAF-------ENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~k  261 (970)
T KOG0946|consen  199 SI----------QKLVAF-------ENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLK  261 (970)
T ss_pred             hH----------HHHHHH-------HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHh
Confidence            32          11 112       345678888887643   224677888889999875443     35678999999


Q ss_pred             hhcC---CC--------HHHH--HHHHHHHHhhcCCCCCCCHHHHH--HHHHCCCcHhHHHhhccCh-h--HHHHHHHHH
Q 041643          452 LLSN---RN--------VDVA--TEAVIALSKFVSPDNFNRSEHSK--AIIEFDGVPPLMRLLKISD-R--AQVHGLVFL  513 (576)
Q Consensus       452 LL~~---~~--------~~V~--~eAa~AL~nla~~~n~~~~~~~~--~Iv~~ggi~~Lv~LL~~~d-~--vq~~A~~~L  513 (576)
                      +|..   ++        ..|+  -+|-..+.-+.+++|+....|+.  ++...+++..||.++-+.. +  ++..++.++
T Consensus       262 lL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitv  341 (970)
T KOG0946|consen  262 LLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITV  341 (970)
T ss_pred             hcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHH
Confidence            9842   12        1222  14556666777888876655554  8999999999999987653 2  777788888


Q ss_pred             HHHh-cccCchHHHHh
Q 041643          514 CYLA-LSAGNSKALEQ  528 (576)
Q Consensus       514 ~~la-l~~~~~~~l~~  528 (576)
                      ..+. .|..|+..++.
T Consensus       342 AevVRgn~~nQ~~F~~  357 (970)
T KOG0946|consen  342 AEVVRGNARNQDEFAD  357 (970)
T ss_pred             HHHHHhchHHHHHHhh
Confidence            7775 45566777764

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.97  E-value=0.00068  Score=75.45  Aligned_cols=283  Identities=18%  Similarity=0.206  Sum_probs=168.3

Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCch
Q 041643          160 ILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQET  238 (576)
Q Consensus       160 i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~  238 (576)
                      +...+..+..-|++.++..|..|..+|.++..  ++....     .+|++.++|.+++ +.+++.|+.|+..+.. +++.
T Consensus        77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~  148 (526)
T PF01602_consen   77 LILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDL  148 (526)
T ss_dssp             HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCC
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHH
Confidence            34455555667888899999999999999873  333333     4789999999888 9999999999999987 3443


Q ss_pred             HHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHH
Q 041643          239 VRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSL  318 (576)
Q Consensus       239 ~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~  318 (576)
                      ..   .. .++.+.++|.+.+..++..|..++..+ ...+....     ..++.++..|..-.....+    |..  ..+
T Consensus       149 ~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~----~~q--~~i  212 (526)
T PF01602_consen  149 VE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDP----WLQ--IKI  212 (526)
T ss_dssp             HH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSH----HHH--HHH
T ss_pred             HH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccch----HHH--HHH
Confidence            22   22 589999999999999999999999988 22222211     3455555554311000011    110  000


Q ss_pred             HhhhccccccccccCCCCCCCCCCCCCCCC----------cccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhccc
Q 041643          319 VQMKKEMTEKSTNVTNNSDGSSRGGHGQHY----------NKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAES  388 (576)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----------~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~  388 (576)
                      ++.-...              ...   .+.          +.......++.    +.-.|+.++.++.            
T Consensus       213 l~~l~~~--------------~~~---~~~~~~~~~~i~~l~~~l~s~~~~----V~~e~~~~i~~l~------------  259 (526)
T PF01602_consen  213 LRLLRRY--------------APM---EPEDADKNRIIEPLLNLLQSSSPS----VVYEAIRLIIKLS------------  259 (526)
T ss_dssp             HHHHTTS--------------TSS---SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHS------------
T ss_pred             HHHHHhc--------------ccC---ChhhhhHHHHHHHHHHHhhccccH----HHHHHHHHHHHhh------------
Confidence            1111000              000   000          00000000011    1122333333222            


Q ss_pred             chHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhc-CCCHHHHHHHHHH
Q 041643          389 NAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLS-NRNVDVATEAVIA  467 (576)
Q Consensus       389 ~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~-~~~~~V~~eAa~A  467 (576)
                                +..+....+++.|++++.+.+ +.++..++.+|..++...+..-. .....+..|. +.+..+++.+...
T Consensus       260 ----------~~~~~~~~~~~~L~~lL~s~~-~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~l  327 (526)
T PF01602_consen  260 ----------PSPELLQKAINPLIKLLSSSD-PNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDL  327 (526)
T ss_dssp             ----------SSHHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHH
T ss_pred             ----------cchHHHHhhHHHHHHHhhccc-chhehhHHHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHH
Confidence                      222246788899999998554 77999999999999876522111 2222333444 8889999999999


Q ss_pred             HHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhh-ccChh-HHHHHHHHHHHHhcccCc
Q 041643          468 LSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLL-KISDR-AQVHGLVFLCYLALSAGN  522 (576)
Q Consensus       468 L~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL-~~~d~-vq~~A~~~L~~lal~~~~  522 (576)
                      |.+++.      .++.+.|     ++.|...+ +.+|. ++..++..++.++...+.
T Consensus       328 L~~l~~------~~n~~~I-----l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~  373 (526)
T PF01602_consen  328 LYKLAN------ESNVKEI-----LDELLKYLSELSDPDFRRELIKAIGDLAEKFPP  373 (526)
T ss_dssp             HHHH--------HHHHHHH-----HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred             Hhhccc------ccchhhH-----HHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence            999974      3556665     56777777 44465 888888888888754433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.91  E-value=2e-05  Score=56.49  Aligned_cols=40  Identities=30%  Similarity=0.525  Sum_probs=36.6

Q ss_pred             cccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc
Q 041643          194 NRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT  234 (576)
Q Consensus       194 ~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~  234 (576)
                      ++++..+++.|+||+|++||++++ ++.|+.|+|+|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~-~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC
Confidence            458889999999999999999888 9999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.0002  Score=75.09  Aligned_cols=133  Identities=17%  Similarity=0.224  Sum_probs=116.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcC
Q 041643          168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVL  246 (576)
Q Consensus       168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~G  246 (576)
                      +..|++++.+.|..||+.|+..+.+|++.+..+++.|+.+.|++.|.+.++...+..|-.|+..|-.+ +.........+
T Consensus       130 l~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~  209 (342)
T KOG2160|consen  130 LGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLN  209 (342)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcC
Confidence            56889999999999999999999999999999999999999999999887577889999999999985 56677788888


Q ss_pred             CHHHHHHhhcC--CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccc
Q 041643          247 GVPIIVSVLGE--APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMD  300 (576)
Q Consensus       247 avp~LV~lL~s--~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~  300 (576)
                      +...|..+|.+  .+...|..++..+.++...+...++.+...|.-..++.+..+.
T Consensus       210 G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l  265 (342)
T KOG2160|consen  210 GYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSL  265 (342)
T ss_pred             CHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhcc
Confidence            89999999988  4577888899999999988777888777778877788777654

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=97.88  E-value=0.00083  Score=71.75  Aligned_cols=274  Identities=14%  Similarity=0.149  Sum_probs=174.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc--------CCch
Q 041643          167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT--------DQET  238 (576)
Q Consensus       167 li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~--------~~~~  238 (576)
                      ++.++.+-..+.+.....+++--+.+|+..+-..++.|-+..++++++.-. ......=+.+|+....        ..+.
T Consensus       228 l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k-~~t~k~d~~~l~k~~~el~vllltGDeS  306 (604)
T KOG4500|consen  228 LLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMK-DFTKKTDMLNLFKRIAELDVLLLTGDES  306 (604)
T ss_pred             HHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcc-cccchHHHHHHHHhhhhHhhhhhcCchH
Confidence            345555544444444444443333456777788889999999999998744 3344434445544443        2334


Q ss_pred             HHHHHHcC-CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHH
Q 041643          239 VRFIVDVL-GVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHS  317 (576)
Q Consensus       239 ~~~iv~~G-avp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~  317 (576)
                      -..+..-| ...-++..++|.+...+...+-+++|+|..++.+. .+.+.|.+.-|+++|..+..               
T Consensus       307 Mq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci-~~v~~~~~nkL~~~l~~~~~---------------  370 (604)
T KOG4500|consen  307 MQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICI-QLVQKDFLNKLISCLMQEKD---------------  370 (604)
T ss_pred             HHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHhcC---------------
Confidence            44455444 56777888889999999999999999999887665 56677888889888853210               


Q ss_pred             HHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhh
Q 041643          318 LVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAF  397 (576)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~  397 (576)
                                                            .|..|+  ++-++..||.+|..--+            -++.|
T Consensus       371 --------------------------------------vdgnV~--~qhA~lsALRnl~IPv~------------nka~~  398 (604)
T KOG4500|consen  371 --------------------------------------VDGNVE--RQHACLSALRNLMIPVS------------NKAHF  398 (604)
T ss_pred             --------------------------------------CCccch--hHHHHHHHHHhccccCC------------chhhc
Confidence                                                  112221  45678899999975321            12244


Q ss_pred             ccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch------hhhCcHHHHHHhhcCCCHH-HHHHHHHHHHh
Q 041643          398 KTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA------KEKRMIGPLVALLSNRNVD-VATEAVIALSK  470 (576)
Q Consensus       398 k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~------~~~~~I~~LV~LL~~~~~~-V~~eAa~AL~n  470 (576)
                      .+     .|+++.++..++.+. |.++---++++.-+....+-      .....+..||+-=++.+.. |.-|.-+.+.-
T Consensus       399 ~~-----aGvteaIL~~lk~~~-ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~  472 (604)
T KOG4500|consen  399 AP-----AGVTEAILLQLKLAS-PPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLG  472 (604)
T ss_pred             cc-----cchHHHHHHHHHhcC-CcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHH
Confidence            33     367778888887765 55554444444433222110      0112456666665666654 77777777776


Q ss_pred             hcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHh
Q 041643          471 FVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLA  517 (576)
Q Consensus       471 la~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~la  517 (576)
                      +.-...|  .+-...+.+.|||+.+|.++....- .|.+|+.+||.++
T Consensus       473 lIkHs~~--kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~  518 (604)
T KOG4500|consen  473 LIKHSKY--KDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE  518 (604)
T ss_pred             HHHhhHh--hhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence            6532111  3556788899999999999987766 6889999998875

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.87  E-value=3.4e-05  Score=64.65  Aligned_cols=86  Identities=26%  Similarity=0.412  Sum_probs=68.1

Q ss_pred             HHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 041643          408 LDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAII  487 (576)
Q Consensus       408 V~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv  487 (576)
                      |+.|++.|.+++++.++..++.+||++.      +..++|.|+++|++.++.|+..|+++|+++..              
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------
Confidence            4678888855566899999999999652      34689999999999999999999999998842              


Q ss_pred             HCCCcHhHHHhhccCh-h-HHHHHHHHHH
Q 041643          488 EFDGVPPLMRLLKISD-R-AQVHGLVFLC  514 (576)
Q Consensus       488 ~~ggi~~Lv~LL~~~d-~-vq~~A~~~L~  514 (576)
                       ...++.|++++.+.+ . ++..|+.+|+
T Consensus        61 -~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 -PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             238889999998754 3 6777877663

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=0.0049  Score=66.79  Aligned_cols=299  Identities=17%  Similarity=0.120  Sum_probs=184.8

Q ss_pred             HHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChh
Q 041643          182 AANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVK  261 (576)
Q Consensus       182 AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~  261 (576)
                      |..-|.|||.+ -.--....+..-|.-||+.|...+ .+.-.....-|..|+.-.+|+..|.+.|.|..|+++....+++
T Consensus       283 a~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~d  360 (791)
T KOG1222|consen  283 AVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPD  360 (791)
T ss_pred             HHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHH
Confidence            44447888864 344445566778899999999888 7887788888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCC
Q 041643          262 VQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSR  341 (576)
Q Consensus       262 vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~  341 (576)
                      ++......|.|++.+ ...|..++..|.+|-|+.+|.+++.  +  .|+-        ++...              +  
T Consensus       361 L~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~--~--~iA~--------~~lYh--------------~--  411 (791)
T KOG1222|consen  361 LRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTK--H--GIAL--------NMLYH--------------L--  411 (791)
T ss_pred             HHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCccc--c--hhhh--------hhhhh--------------h--
Confidence            999999999999976 5788899999999999999988751  1  1110        00000              0  


Q ss_pred             CCCCCCCcccccccCCHHHHHHH-HHHHHHHHHHh-hcCCcccchhcccchHHHH-----hhhccCchhHHH--HHHHHH
Q 041643          342 GGHGQHYNKKDRELETPEVKAKV-RIACAEALWKL-SKGCLLSLWSAESNAELRR-----SAFKTNSPAAKA--VLDQLL  412 (576)
Q Consensus       342 ~~~g~~~~~~~~e~~d~~vk~~~-k~~Aa~ALw~L-a~g~~~~Iavae~~~~lrr-----~a~k~~s~a~~~--vV~~Ll  412 (576)
                                   +-|..+|.-. ..+|..-+.+- -.|....|     +-++-.     +.=|.|.-....  .++.|+
T Consensus       412 -------------S~dD~~K~MfayTdci~~lmk~v~~~~~~~v-----dl~lia~ciNl~lnkRNaQlvceGqgL~~LM  473 (791)
T KOG1222|consen  412 -------------SCDDDAKAMFAYTDCIKLLMKDVLSGTGSEV-----DLALIALCINLCLNKRNAQLVCEGQGLDLLM  473 (791)
T ss_pred             -------------ccCcHHHHHHHHHHHHHHHHHHHHhcCCcee-----cHHHHHHHHHHHhccccceEEecCcchHHHH
Confidence                         0122221000 01122111111 01111111     001100     000111111110  112233


Q ss_pred             H-HhhhcCChhhHHHHHHHHHHHhcCCchhhhC---cHHHHHHhhcCC-CHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 041643          413 R-LIHEESDAMLQTPAIRSIGCLAKTFPAKEKR---MIGPLVALLSNR-NVDVATEAVIALSKFVSPDNFNRSEHSKAII  487 (576)
Q Consensus       413 ~-lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~---~I~~LV~LL~~~-~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv  487 (576)
                      . -+...|  .+.   ++.+.|++......+..   .|+-|...+++. ++.--.|+...|+|++-++    .+-.+.+.
T Consensus       474 ~ra~k~~D--~lL---mK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~d----ldw~~ilq  544 (791)
T KOG1222|consen  474 ERAIKSRD--LLL---MKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTD----LDWAKILQ  544 (791)
T ss_pred             HHHhcccc--hHH---HHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCC----CCHHHHHh
Confidence            2 222222  222   34556666443333332   367788877654 4556778889999998654    35567788


Q ss_pred             HCCCcHhHHHhhccC---hhHHHHHHHHHHHHhcccCchHHHHhccchhhHhhh
Q 041643          488 EFDGVPPLMRLLKIS---DRAQVHGLVFLCYLALSAGNSKALEQARALNALEGA  538 (576)
Q Consensus       488 ~~ggi~~Lv~LL~~~---d~vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le~~  538 (576)
                      +..-+|-+-+-|..+   |..+..-+..++.++....-..-++.+++++.|..+
T Consensus       545 ~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieL  598 (791)
T KOG1222|consen  545 SENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIEL  598 (791)
T ss_pred             hccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHH
Confidence            889999999888765   235666666666666555556677889999887633

>TIGR02270 conserved hypothetical protein

Probab=97.74  E-value=0.0037  Score=68.17  Aligned_cols=56  Identities=13%  Similarity=0.019  Sum_probs=40.5

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChhHHHHHHHHHHHHh
Q 041643          444 RMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLA  517 (576)
Q Consensus       444 ~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~vq~~A~~~L~~la  517 (576)
                      ++++.|..+++...  ++..++++|+.+-..               ..+++|++++.... +...|..+++.|.
T Consensus       240 ~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p---------------~av~~L~~~l~d~~-~aR~A~eA~~~It  295 (410)
T TIGR02270       240 DAQAWLRELLQAAA--TRREALRAVGLVGDV---------------EAAPWCLEAMREPP-WARLAGEAFSLIT  295 (410)
T ss_pred             hHHHHHHHHhcChh--hHHHHHHHHHHcCCc---------------chHHHHHHHhcCcH-HHHHHHHHHHHhh
Confidence            67888888887644  888899999877542               37788888885333 6666777777775

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.73  E-value=7e-05  Score=78.54  Aligned_cols=127  Identities=16%  Similarity=0.191  Sum_probs=99.3

Q ss_pred             HhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHH------ccCCChHHHHHHHHHHHHhhcCCchHHHHHH
Q 041643          171 IQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLL------KEAASPDAQTAAANALFNIATDQETVRFIVD  244 (576)
Q Consensus       171 L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL------~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~  244 (576)
                      +++.+.+...-|...|.+|.+. +++|..+.+.|++++|+++|      .+......|.++.-+++-|+-+++....+.+
T Consensus       159 l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~  237 (312)
T PF03224_consen  159 LSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK  237 (312)
T ss_dssp             T-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT
T ss_pred             hcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc
Confidence            3334555667888999999985 89999999999999999999      4444477889999999999999999999999


Q ss_pred             cCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChH-HHHHHHhcCCchhHHHhhcc
Q 041643          245 VLGVPIIVSVLGE-APVKVQVAVANLVARMAELDSI-AQEEFVRENVTRSLISLLCM  299 (576)
Q Consensus       245 ~Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~-~r~~i~~~g~I~~LV~LL~~  299 (576)
                      .+.||.|+++++. ..+++...+.+++.|+....+. +-..+...| ++++++.|..
T Consensus       238 ~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~-~l~~l~~L~~  293 (312)
T PF03224_consen  238 KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCG-LLKTLQNLSE  293 (312)
T ss_dssp             TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH--HHHHHHHHHS
T ss_pred             cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHcc-HHHHHHHHhc
Confidence            9999999999976 5688999999999999976653 555666655 4667777753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.72  E-value=0.0052  Score=68.74  Aligned_cols=349  Identities=15%  Similarity=0.148  Sum_probs=205.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCC-ChHHHHHHHHHHHHhhc-CCchHHHHHH
Q 041643          167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAA-SPDAQTAAANALFNIAT-DQETVRFIVD  244 (576)
Q Consensus       167 li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~-~~~~q~~AA~AL~nLa~-~~~~~~~iv~  244 (576)
                      ++..+..-+++....|-...-|+.-.+++++.-+++.|++|.|..++...+ +++.+..-+..+..+.. ..+....+.+
T Consensus        14 ~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~   93 (678)
T KOG1293|consen   14 LLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR   93 (678)
T ss_pred             HHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence            467777888888899999999998888888888999999999999997542 26777555555555555 4567889999


Q ss_pred             cCCHHHHHHhhcCCC-hhHHHHHHHHHHHHhcCChHHH--HHHHhcCCchhHHHhhccccc--c--CCCc-chhhhhHHH
Q 041643          245 VLGVPIIVSVLGEAP-VKVQVAVANLVARMAELDSIAQ--EEFVRENVTRSLISLLCMDIA--L--DLPK-PESAKTTIH  316 (576)
Q Consensus       245 ~Gavp~LV~lL~s~~-~~vq~~Aa~aL~~LA~~~~~~r--~~i~~~g~I~~LV~LL~~~t~--~--~~~~-~i~~~~si~  316 (576)
                      ++..+.|..+|.+.+ ..+.+.....+-++-..++..-  ...-...+|+.+-.++.-++.  +  ..+. +.+.....|
T Consensus        94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~h  173 (678)
T KOG1293|consen   94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDH  173 (678)
T ss_pred             HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchh
Confidence            999999999998887 8888888888888775442211  111112333433333331211  0  0000 111111222


Q ss_pred             HHHhhhccccc--c-cccc---CC---CCCCCC--------CCCCCCCCcccc------------cccCCHHHHHHHHHH
Q 041643          317 SLVQMKKEMTE--K-STNV---TN---NSDGSS--------RGGHGQHYNKKD------------RELETPEVKAKVRIA  367 (576)
Q Consensus       317 ~~v~~~~~~~~--~-~~~~---~~---~~~~~~--------~~~~g~~~~~~~------------~e~~d~~vk~~~k~~  367 (576)
                      ..++.+.....  . .+..   ..   .+..++        ..-++...+.+.            +...||...  .+..
T Consensus       174 q~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s--~~l~  251 (678)
T KOG1293|consen  174 QLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFS--ERLR  251 (678)
T ss_pred             hheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCcc--HHHH
Confidence            22222221100  0 0000   00   000000        000111111010            111111111  1234


Q ss_pred             HHHHHHHhhcCCccc----------------c------------------------------------------------
Q 041643          368 CAEALWKLSKGCLLS----------------L------------------------------------------------  383 (576)
Q Consensus       368 Aa~ALw~La~g~~~~----------------I------------------------------------------------  383 (576)
                      ++.+|-++..++-+.                |                                                
T Consensus       252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~  331 (678)
T KOG1293|consen  252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT  331 (678)
T ss_pred             HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence            555665554443100                0                                                


Q ss_pred             ---------------------------------------------hhc--------ccchHHHHhhh-------------
Q 041643          384 ---------------------------------------------WSA--------ESNAELRRSAF-------------  397 (576)
Q Consensus       384 ---------------------------------------------ava--------e~~~~lrr~a~-------------  397 (576)
                                                                   .+-        -.+.+.+++++             
T Consensus       332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL  411 (678)
T KOG1293|consen  332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL  411 (678)
T ss_pred             HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence                                                         000        01123333332             


Q ss_pred             ccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          398 KTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       398 k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                      .+. +.-..+.++|++++..++ ..++..++++|.|++-.|.+.     ++|+|..|...+.+.++.+++.+-|+|.++.
T Consensus       412 ~tg-~~~~dv~~plvqll~dp~-~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~  489 (678)
T KOG1293|consen  412 RTG-LKRNDVAQPLVQLLMDPE-IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM  489 (678)
T ss_pred             HcC-CccchhHHHHHHHhhCcc-hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            122 344578889999997654 678889999999999877653     5689999999999999999999999999987


Q ss_pred             CCCCCCCHHH-HHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch
Q 041643          473 SPDNFNRSEH-SKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS  523 (576)
Q Consensus       473 ~~~n~~~~~~-~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~  523 (576)
                      -+    +.+. +...-..=+...++.+.+..|. ||..++.+|.|+.-+..++
T Consensus       490 f~----~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s  538 (678)
T KOG1293|consen  490 FN----CDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS  538 (678)
T ss_pred             hc----chHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence            32    2333 3344444456666777777776 9999999999997654444

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.69  E-value=0.0024  Score=68.17  Aligned_cols=265  Identities=15%  Similarity=0.147  Sum_probs=168.4

Q ss_pred             HhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHc-cCCChHHHHHHHHHHHHhhcCCc
Q 041643          160 ILAWVWSFISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLK-EAASPDAQTAAANALFNIATDQE  237 (576)
Q Consensus       160 i~~~v~~li~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~-~g~~~~~q~~AA~AL~nLa~~~~  237 (576)
                      ...+-..+...++++ +.+-..-|+++|-.+.+. +++|-.++.+.|+..|+..|. +..+...|.....+++-|+-++.
T Consensus       154 ~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~  232 (442)
T KOG2759|consen  154 LDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPH  232 (442)
T ss_pred             HHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHH
Confidence            334445556677775 566777888899999997 789999999999999999994 33337899999999999999998


Q ss_pred             hHHHHHHcCCHHHHHHhhcCC-ChhHHHHHHHHHHHHhcCCh------HHHHHHHhcCCchhHHHhhccccccCCCc-ch
Q 041643          238 TVRFIVDVLGVPIIVSVLGEA-PVKVQVAVANLVARMAELDS------IAQEEFVRENVTRSLISLLCMDIALDLPK-PE  309 (576)
Q Consensus       238 ~~~~iv~~Gavp~LV~lL~s~-~~~vq~~Aa~aL~~LA~~~~------~~r~~i~~~g~I~~LV~LL~~~t~~~~~~-~i  309 (576)
                      -.+.+-.-+-|+.|++++++. .+.|-.-...++.|+....+      +....+.. +.+++-+++|....   ++. .+
T Consensus       233 ~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rk---ysDEDL  308 (442)
T KOG2759|consen  233 AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERK---YSDEDL  308 (442)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcC---CCcHHH
Confidence            888888888999999999875 47788888889999987653      12222333 45677777775432   111 01


Q ss_pred             hhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCC----cccc-h
Q 041643          310 SAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGC----LLSL-W  384 (576)
Q Consensus       310 ~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~----~~~I-a  384 (576)
                      ..  .+..+.....+                      +.  +.....|. -+.++  ..-.--|+=..-+    .+|+ .
T Consensus       309 ~~--di~~L~e~L~~----------------------sv--q~LsSFDe-Y~sEl--~sG~L~WSP~Hk~e~FW~eNa~r  359 (442)
T KOG2759|consen  309 VD--DIEFLTEKLKN----------------------SV--QDLSSFDE-YKSEL--RSGRLEWSPVHKSEKFWRENADR  359 (442)
T ss_pred             HH--HHHHHHHHHHH----------------------HH--HhhccHHH-HHHHH--HhCCcCCCccccccchHHHhHHH
Confidence            10  00000000000                      00  00000010 00000  0001111000000    0000 1


Q ss_pred             hcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHH
Q 041643          385 SAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVD  459 (576)
Q Consensus       385 vae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~  459 (576)
                      .-|.+               -.++..|+++|+.+++|.+..-|+--||..+|..|..     +.|+=..+.+||.+.+++
T Consensus       360 lnenn---------------yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~  424 (442)
T KOG2759|consen  360 LNENN---------------YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPE  424 (442)
T ss_pred             Hhhcc---------------HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCch
Confidence            11111               2467889999998777888888888899999988752     336668899999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 041643          460 VATEAVIALSKFVS  473 (576)
Q Consensus       460 V~~eAa~AL~nla~  473 (576)
                      |+.+|-.|+-++-.
T Consensus       425 Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  425 VRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987753

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.58  E-value=0.00014  Score=51.96  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=36.4

Q ss_pred             CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 041643          236 QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMA  274 (576)
Q Consensus       236 ~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA  274 (576)
                      ++++..+++.|++|+|+++|++++.+++..++|+|.||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            457888999999999999999999999999999999997

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.0055  Score=69.51  Aligned_cols=386  Identities=15%  Similarity=0.118  Sum_probs=197.7

Q ss_pred             cchHhHHHHHHHH-HHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC
Q 041643          157 NDPILAWVWSFIS-TIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD  235 (576)
Q Consensus       157 ~~~i~~~v~~li~-~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~  235 (576)
                      .|.|...||.+|. -+++.+-..|..|+.++++.....+..+..=+..+++|.+++++.+.+ .-.+.-+||+|+.++..
T Consensus       358 ~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~  436 (859)
T KOG1241|consen  358 GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADF  436 (859)
T ss_pred             cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhh
Confidence            7778888999988 999999999999999999998765555554456789999999998655 77889999999999984


Q ss_pred             -CchH-HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHH-----HHHHhcCCchhHHHhhccccccCC---
Q 041643          236 -QETV-RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQ-----EEFVRENVTRSLISLLCMDIALDL---  305 (576)
Q Consensus       236 -~~~~-~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r-----~~i~~~g~I~~LV~LL~~~t~~~~---  305 (576)
                       ++-. ......+.++.|++=|.+. +.+-.+++|++-+|+..-++.-     ..+.. -..+++|.=|-..|...+   
T Consensus       437 l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnq  514 (859)
T KOG1241|consen  437 LPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQ  514 (859)
T ss_pred             chhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccch
Confidence             3221 1233455666666666554 6888999999999994322110     00111 122333332211221000   


Q ss_pred             Cc-chhhhhHHHHHHhhhcccccccccc------CCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcC
Q 041643          306 PK-PESAKTTIHSLVQMKKEMTEKSTNV------TNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKG  378 (576)
Q Consensus       306 ~~-~i~~~~si~~~v~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g  378 (576)
                      +. ..+.=.++..++.......+..-.+      ......++ +        .....+|..-..+++..-+..|..+-+-
T Consensus       515 sNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~-~--------~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk  585 (859)
T KOG1241|consen  515 SNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTIS-S--------QILSLADRAQLNELQSLLCNTLQSIIRK  585 (859)
T ss_pred             hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH-H--------HhccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            00 0000002222221111100000000      00000000 0        0011233332234444555555443211


Q ss_pred             CcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhc
Q 041643          379 CLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLS  454 (576)
Q Consensus       379 ~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~  454 (576)
                      -         +++.|.        ....++..|++++++.++..+++-|..+++.++......    -..++|-|..-|+
T Consensus       586 ~---------~~~~~~--------~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~  648 (859)
T KOG1241|consen  586 V---------GSDIRE--------VSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLS  648 (859)
T ss_pred             c---------cccchh--------HHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhh
Confidence            0         112222        234567778888887666778999999999887533211    1134677777775


Q ss_pred             CCC-HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh---HHHHHHHHHHHHhcccCchHHHHhcc
Q 041643          455 NRN-VDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR---AQVHGLVFLCYLALSAGNSKALEQAR  530 (576)
Q Consensus       455 ~~~-~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~---vq~~A~~~L~~lal~~~~~~~l~~~~  530 (576)
                      +-. ..|-.-|..-++.++-   .+..+  -...-.+-...|++-|.+...   ++-.-+...+-||+.-+..-+=-=.-
T Consensus       649 n~~e~qVc~~aVglVgdl~r---aL~~~--i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~  723 (859)
T KOG1241|consen  649 NFQEYQVCAAAVGLVGDLAR---ALEDD--ILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEM  723 (859)
T ss_pred             cchHHHHHHHHHHHHHHHHH---HHHhh--hhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence            443 3344445555555541   01001  011122445667777765532   33334444555665444322111123


Q ss_pred             chhhHh-hh-hcccCCCCCcHHHHHHHHHHHHHhhcC---CCC-----CCCCCCCC
Q 041643          531 ALNALE-GA-ARTVLPQHPELRDLFAQAIYHLTLYQA---GSH-----PHRQTYAP  576 (576)
Q Consensus       531 ~l~~Le-~~-~~~~~~q~~~~~~l~~~a~~~l~~y~~---~~~-----~~~~~~~~  576 (576)
                      +++.|. ++ -+..---+...+.+-+--.++|+.|-+   |-+     .+-+||+|
T Consensus       724 vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~  779 (859)
T KOG1241|consen  724 VMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVP  779 (859)
T ss_pred             HHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchH
Confidence            344454 22 122222233444444556778888865   322     24567765

>TIGR02270 conserved hypothetical protein

Probab=97.47  E-value=0.0058  Score=66.65  Aligned_cols=197  Identities=18%  Similarity=0.158  Sum_probs=115.5

Q ss_pred             cCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHH
Q 041643          203 EGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQE  282 (576)
Q Consensus       203 ~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~  282 (576)
                      ..+++.|+..|+.+.++.....|+.+|...  +...        ++..|++.|.+.++.++..++.+|+.+-.       
T Consensus        53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~--------~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------  115 (410)
T TIGR02270        53 KAATELLVSALAEADEPGRVACAALALLAQ--EDAL--------DLRSVLAVLQAGPEGLCAGIQAALGWLGG-------  115 (410)
T ss_pred             HhHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH--------HHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence            346899999996544366666666666322  1111        37899999999988899999998875432       


Q ss_pred             HHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHH
Q 041643          283 EFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKA  362 (576)
Q Consensus       283 ~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~  362 (576)
                          .+..+.|+.+|.++                                                        ||.++ 
T Consensus       116 ----~~a~~~L~~~L~~~--------------------------------------------------------~p~vR-  134 (410)
T TIGR02270       116 ----RQAEPWLEPLLAAS--------------------------------------------------------EPPGR-  134 (410)
T ss_pred             ----hHHHHHHHHHhcCC--------------------------------------------------------ChHHH-
Confidence                23457778887432                                                        23222 


Q ss_pred             HHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhh
Q 041643          363 KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE  442 (576)
Q Consensus       363 ~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~  442 (576)
                         ..+..+|..-  +.                          ...+.|..+|++.+ +.+...|+++||.+-      .
T Consensus       135 ---~aal~al~~r--~~--------------------------~~~~~L~~~L~d~d-~~Vra~A~raLG~l~------~  176 (410)
T TIGR02270       135 ---AIGLAALGAH--RH--------------------------DPGPALEAALTHED-ALVRAAALRALGELP------R  176 (410)
T ss_pred             ---HHHHHHHHhh--cc--------------------------ChHHHHHHHhcCCC-HHHHHHHHHHHHhhc------c
Confidence               2333333321  00                          01345566666544 777788888888774      2


Q ss_pred             hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCC------------CCCCHHHHHHHHHC----CCcHhHHHhhccChhHH
Q 041643          443 KRMIGPLVALLSNRNVDVATEAVIALSKFVSPD------------NFNRSEHSKAIIEF----DGVPPLMRLLKISDRAQ  506 (576)
Q Consensus       443 ~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~------------n~~~~~~~~~Iv~~----ggi~~Lv~LL~~~d~vq  506 (576)
                      ...+|.|...+++.++.|+..|++++..+...+            +.........+...    ..++.|.+|++... ++
T Consensus       177 ~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~-vr  255 (410)
T TIGR02270       177 RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA-TR  255 (410)
T ss_pred             ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh-hH
Confidence            345777777788888888888888777663211            00000000111111    23455666665433 77


Q ss_pred             HHHHHHHHHH
Q 041643          507 VHGLVFLCYL  516 (576)
Q Consensus       507 ~~A~~~L~~l  516 (576)
                      ..++.+++.+
T Consensus       256 ~~a~~AlG~l  265 (410)
T TIGR02270       256 REALRAVGLV  265 (410)
T ss_pred             HHHHHHHHHc
Confidence            7788877766

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.0068  Score=67.92  Aligned_cols=394  Identities=17%  Similarity=0.152  Sum_probs=201.4

Q ss_pred             ccHHHHHHHHHhh-----hcchHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 041643          119 ADFKKVFSLLESS-----IGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDN  193 (576)
Q Consensus       119 ~~l~~l~~~L~~~-----~~~~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~  193 (576)
                      ..++.|...|++.     -|...+|-++--....  -+-.-+.+.|+.+++-.++...+..++..|..|..++-..--. 
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~--~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~-  204 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQ--FLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII-  204 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHH--HHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec-
Confidence            3466677777542     2345555554211000  0001122667777888888888999999999888776543322 


Q ss_pred             cccHHHHHhcCC-HHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHH
Q 041643          194 NRNRKIIVEEGG-ILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVAR  272 (576)
Q Consensus       194 ~~~~~~I~~~Gg-IppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~  272 (576)
                       .++..+..-.- +..|-.|-.+.+ ++++++-..+|.-|..-...+-.=.-.+.|..+.+.-++.+++|--.|+.....
T Consensus       205 -~~qal~~~iD~Fle~lFalanD~~-~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla  282 (885)
T KOG2023|consen  205 -QTQALYVHIDKFLEILFALANDED-PEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA  282 (885)
T ss_pred             -CcHHHHHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence             23333333222 445555554445 999999999999888643332222235667788888888889999999999999


Q ss_pred             HhcCChHHHHHHHhc--CCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccC--CCCCCCCCCC-CCCC
Q 041643          273 MAELDSIAQEEFVRE--NVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVT--NNSDGSSRGG-HGQH  347 (576)
Q Consensus       273 LA~~~~~~r~~i~~~--g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~--~~~~~~~~~~-~g~~  347 (576)
                      +|.. |.+++.+...  ..||.|++=+.-..   .        .+   +..+++-....-..+  -.+|.+..++ .|+.
T Consensus       283 ~aeq-pi~~~~L~p~l~kliPvLl~~M~Ysd---~--------D~---~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~  347 (885)
T KOG2023|consen  283 LAEQ-PICKEVLQPYLDKLIPVLLSGMVYSD---D--------DI---ILLKNNEEDESVPDREEDIKPRFHKSKEHGNG  347 (885)
T ss_pred             HhcC-cCcHHHHHHHHHHHHHHHHccCcccc---c--------cH---HHhcCccccccCCchhhhccchhhhchhccCc
Confidence            9975 5788777654  55666665443110   0        00   111111000000000  0111111110 1222


Q ss_pred             CcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhc---CChhhH
Q 041643          348 YNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEE---SDAMLQ  424 (576)
Q Consensus       348 ~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~---~~~~lq  424 (576)
                      .-+..-+.+|.+-    -.+-+..=|||=.-+..-+       +.-...|+      ..+++.++.+|+.+   +.=.++
T Consensus       348 ~~~~~eDdddDe~----DDdD~~~dWNLRkCSAAaL-------DVLanvf~------~elL~~l~PlLk~~L~~~~W~vr  410 (885)
T KOG2023|consen  348 EDADDEDDDDDED----DDDDAFSDWNLRKCSAAAL-------DVLANVFG------DELLPILLPLLKEHLSSEEWKVR  410 (885)
T ss_pred             ccccccccccccc----ccccccccccHhhccHHHH-------HHHHHhhH------HHHHHHHHHHHHHHcCcchhhhh
Confidence            1000000011100    0011222233321111100       00111121      13455555555432   223688


Q ss_pred             HHHHHHHHHHhcCCch---h-hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhc
Q 041643          425 TPAIRSIGCLAKTFPA---K-EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLK  500 (576)
Q Consensus       425 ~~a~~aLgnLa~~~~~---~-~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~  500 (576)
                      +.++-|+|.+|...-.   . =...||-|+.+|+++.+-|+.-++|+|++++.--  .+..+.+++     .|.|-.||+
T Consensus       411 EagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv--~~~~~~~~f-----~pvL~~ll~  483 (885)
T KOG2023|consen  411 EAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWV--VQDSRDEYF-----KPVLEGLLR  483 (885)
T ss_pred             hhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhH--hcCChHhhh-----HHHHHHHHH
Confidence            9999999999863211   0 0125788999999999999999999999996311  111122332     233333443


Q ss_pred             ----cChhHHHHHHHHHHHHhcccCchHHHHhccchhhHh----hhhcccCCCCCcHHHHHHHHHHHHHhh
Q 041643          501 ----ISDRAQVHGLVFLCYLALSAGNSKALEQARALNALE----GAARTVLPQHPELRDLFAQAIYHLTLY  563 (576)
Q Consensus       501 ----~~d~vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le----~~~~~~~~q~~~~~~l~~~a~~~l~~y  563 (576)
                          +...||..|+.+...+-.+++.       +.+|-|+    .+.....-=+++|--|+-.|++.|.-|
T Consensus       484 ~llD~NK~VQEAAcsAfAtleE~A~~-------eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAds  547 (885)
T KOG2023|consen  484 RLLDSNKKVQEAACSAFATLEEEAGE-------ELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADS  547 (885)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHhccc-------hhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHH
Confidence                3334999999988776444433       2233332    111111111244444666778777664

>PTZ00429 beta-adaptin; Provisional

Probab=97.45  E-value=0.018  Score=67.17  Aligned_cols=135  Identities=16%  Similarity=0.117  Sum_probs=89.7

Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCch-
Q 041643          160 ILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET-  238 (576)
Q Consensus       160 i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~-  238 (576)
                      +..++..+...|...++-.|..||-++..+-..++   ..+.+.|-++.|.++|.+.+ +.++.+|..+|..+...... 
T Consensus       138 ~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~d-p~Vv~nAl~aL~eI~~~~~~~  213 (746)
T PTZ00429        138 LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNN-PVVASNAAAIVCEVNDYGSEK  213 (746)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCC-ccHHHHHHHHHHHHHHhCchh
Confidence            34445555667778899999999999999876543   44556778999999998888 99999999999999753210 


Q ss_pred             ----H---HH-------------------HHH---------cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC-hHHH-
Q 041643          239 ----V---RF-------------------IVD---------VLGVPIIVSVLGEAPVKVQVAVANLVARMAELD-SIAQ-  281 (576)
Q Consensus       239 ----~---~~-------------------iv~---------~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~-~~~r-  281 (576)
                          +   ..                   +..         ...+..+...|++.+..|.-.|+.++.++.... ++.. 
T Consensus       214 l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~  293 (746)
T PTZ00429        214 IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIE  293 (746)
T ss_pred             hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHH
Confidence                0   00                   000         113444555566777788888888888887532 2322 


Q ss_pred             HHHHhcCCchhHHHhhccc
Q 041643          282 EEFVRENVTRSLISLLCMD  300 (576)
Q Consensus       282 ~~i~~~g~I~~LV~LL~~~  300 (576)
                      ..+.+  ..+|||.|++++
T Consensus       294 ~~~~r--l~~pLv~L~ss~  310 (746)
T PTZ00429        294 RCTVR--VNTALLTLSRRD  310 (746)
T ss_pred             HHHHH--HHHHHHHhhCCC
Confidence            22222  237888887544

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.43  E-value=0.018  Score=60.51  Aligned_cols=213  Identities=24%  Similarity=0.306  Sum_probs=147.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643          164 VWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIV  243 (576)
Q Consensus       164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv  243 (576)
                      +..++..+...+...|..|+..|+.+..           .-.+|+|.++|.+.+ +..+..|+.+|+++-.    ..   
T Consensus        45 ~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~----~~---  105 (335)
T COG1413          45 ADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDED-PRVRDAAADALGELGD----PE---  105 (335)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCC-HHHHHHHHHHHHccCC----hh---
Confidence            3344677888888889999888665432           237899999999988 8999999998887743    22   


Q ss_pred             HcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhh
Q 041643          244 DVLGVPIIVSVLG-EAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK  322 (576)
Q Consensus       244 ~~Gavp~LV~lL~-s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~  322 (576)
                         +++.|+++|. +++..++..++++|+.+-..           .++.+|+.++..+...               +   
T Consensus       106 ---a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~---------------~---  153 (335)
T COG1413         106 ---AVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSG---------------S---  153 (335)
T ss_pred             ---HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhh---------------h---
Confidence               6889999998 58889999999999887632           2488999999654200               0   


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCch
Q 041643          323 KEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP  402 (576)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~  402 (576)
                      .                      ...      ..++. . .++..+..+|+.+-..                        
T Consensus       154 a----------------------~~~------~~~~~-~-~~r~~a~~~l~~~~~~------------------------  179 (335)
T COG1413         154 A----------------------AAA------LDAAL-L-DVRAAAAEALGELGDP------------------------  179 (335)
T ss_pred             h----------------------hhh------ccchH-H-HHHHHHHHHHHHcCCh------------------------
Confidence            0                      000      00111 0 3456788888876322                        


Q ss_pred             hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHH
Q 041643          403 AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEH  482 (576)
Q Consensus       403 a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~  482 (576)
                         ..++.|...+.+.+ ..++..+..+||.+....    ..+.+.++..+...+..++..++.+|+..-..        
T Consensus       180 ---~~~~~l~~~l~~~~-~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~--------  243 (335)
T COG1413         180 ---EAIPLLIELLEDED-ADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGEIGDE--------  243 (335)
T ss_pred             ---hhhHHHHHHHhCch-HHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc--------
Confidence               13456667776654 678889999999886321    13568888899999999999999999877432        


Q ss_pred             HHHHHHCCCcHhHHHhhccChh
Q 041643          483 SKAIIEFDGVPPLMRLLKISDR  504 (576)
Q Consensus       483 ~~~Iv~~ggi~~Lv~LL~~~d~  504 (576)
                             ..+..|+..+...+.
T Consensus       244 -------~~~~~l~~~l~~~~~  258 (335)
T COG1413         244 -------EAVDALAKALEDEDV  258 (335)
T ss_pred             -------hhHHHHHHHHhccch
Confidence                   244555666665554

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.41  E-value=0.0064  Score=65.66  Aligned_cols=264  Identities=17%  Similarity=0.187  Sum_probs=169.2

Q ss_pred             HHHHHHHhcCCHHH--HHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC-chHHH
Q 041643          165 WSFISTIQMGQIKS--RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQ-ETVRF  241 (576)
Q Consensus       165 ~~li~~L~~G~~e~--k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~-~~~~~  241 (576)
                      ..++.+++..+.+.  |.+|+..|-....  .+|++.|+..| ....+.+-+....++.|...+..|.+|=+++ +....
T Consensus       183 D~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~  259 (832)
T KOG3678|consen  183 DLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR  259 (832)
T ss_pred             HHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            34578888888877  8899988877665  47889998877 6666666676654889999999999999976 45678


Q ss_pred             HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC-hHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHh
Q 041643          242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELD-SIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQ  320 (576)
Q Consensus       242 iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~-~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~  320 (576)
                      +|++|++...+--++-.++.+-..+|-+|+|.+-+. -..+..+.+-.+-.-|.-|-                       
T Consensus       260 Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-----------------------  316 (832)
T KOG3678|consen  260 LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-----------------------  316 (832)
T ss_pred             HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-----------------------
Confidence            999999999988888888899999999999998653 22222232222111111100                       


Q ss_pred             hhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccC
Q 041643          321 MKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTN  400 (576)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~  400 (576)
                                                       ...|.-    ++-.||-|..-|+.+.       |-..+.|+++    
T Consensus       317 ---------------------------------~skDel----~R~~AClAV~vlat~K-------E~E~~VrkS~----  348 (832)
T KOG3678|consen  317 ---------------------------------FSKDEL----LRLHACLAVAVLATNK-------EVEREVRKSG----  348 (832)
T ss_pred             ---------------------------------cchHHH----HHHHHHHHHhhhhhhh-------hhhHHHhhcc----
Confidence                                             011222    2457888888887542       2234566653    


Q ss_pred             chhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhh----CcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCC
Q 041643          401 SPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEK----RMIGPLVALLSNRNVDVATEAVIALSKFVSPDN  476 (576)
Q Consensus       401 s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~----~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n  476 (576)
                         .-++|++|+..+.    |          |..||+..+...    .-+..||-+|++.--+.+.-+|.-++--|.-..
T Consensus       349 ---TlaLVEPlva~~D----P----------~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs  411 (832)
T KOG3678|consen  349 ---TLALVEPLVASLD----P----------GRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKS  411 (832)
T ss_pred             ---chhhhhhhhhccC----c----------chhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHH
Confidence               2357888876542    2          234443332211    247888889987766666666665553332110


Q ss_pred             CCCHHHHHHHHHCCCcHhHHHhhccChhHHH-HHHHHHHHHhcccC
Q 041643          477 FNRSEHSKAIIEFDGVPPLMRLLKISDRAQV-HGLVFLCYLALSAG  521 (576)
Q Consensus       477 ~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~vq~-~A~~~L~~lal~~~  521 (576)
                      -  ...-+...+-|+|..|-++..+.|.+.. -|-.+|..|-..+|
T Consensus       412 ~--Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP  455 (832)
T KOG3678|consen  412 L--QGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVP  455 (832)
T ss_pred             h--ccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccC
Confidence            0  1123566788999999999987777543 36666655544444

>PTZ00429 beta-adaptin; Provisional

Probab=97.37  E-value=0.065  Score=62.66  Aligned_cols=255  Identities=12%  Similarity=0.099  Sum_probs=155.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHc
Q 041643          166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDV  245 (576)
Q Consensus       166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~  245 (576)
                      +.+..+++.+.+.|.-.--.|.+.+..+++.  .+   =.|..|.+=|.+.+ +..+-.|.++|++|-.     ..+++.
T Consensus        72 dVvk~~~S~d~elKKLvYLYL~~ya~~~pel--al---LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~-----~~i~e~  140 (746)
T PTZ00429         72 DVVKLAPSTDLELKKLVYLYVLSTARLQPEK--AL---LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV-----SSVLEY  140 (746)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHcccChHH--HH---HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc-----HHHHHH
Confidence            3367788888888887777777777654321  22   15778888888878 8899888888877644     223222


Q ss_pred             CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccc
Q 041643          246 LGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEM  325 (576)
Q Consensus       246 Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~  325 (576)
                       .++.+.+.|.+.++-|+..|+.++..+-..+|+   .+...|.++-|.++|...                         
T Consensus       141 -l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~-------------------------  191 (746)
T PTZ00429        141 -TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDN-------------------------  191 (746)
T ss_pred             -HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCC-------------------------
Confidence             456778888888899999999999998765553   444567777788877421                         


Q ss_pred             cccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHH
Q 041643          326 TEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAK  405 (576)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~  405 (576)
                                                     ||.    +..+|..+|..+...+...         +.         ...
T Consensus       192 -------------------------------dp~----Vv~nAl~aL~eI~~~~~~~---------l~---------l~~  218 (746)
T PTZ00429        192 -------------------------------NPV----VASNAAAIVCEVNDYGSEK---------IE---------SSN  218 (746)
T ss_pred             -------------------------------Ccc----HHHHHHHHHHHHHHhCchh---------hH---------HHH
Confidence                                           121    2345666666665332211         10         112


Q ss_pred             HHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 041643          406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKA  485 (576)
Q Consensus       406 ~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~  485 (576)
                      ..+..|+..|.+-+ +-.|...+..|.............+|..+...|++.+.-|.-+|+.++.+++..-   .++..+.
T Consensus       219 ~~~~~Ll~~L~e~~-EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~---~~~~~~~  294 (746)
T PTZ00429        219 EWVNRLVYHLPECN-EWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC---SQELIER  294 (746)
T ss_pred             HHHHHHHHHhhcCC-hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC---CHHHHHH
Confidence            34555666554433 5666666666643211111112356788888888889999999999999886421   1232222


Q ss_pred             HHHCCCcHhHHHhhccChhHHHHHHHHHHHHhc
Q 041643          486 IIEFDGVPPLMRLLKISDRAQVHGLVFLCYLAL  518 (576)
Q Consensus       486 Iv~~ggi~~Lv~LL~~~d~vq~~A~~~L~~lal  518 (576)
                      +.. ...++|+.|+.+..++|.-++..+..++.
T Consensus       295 ~~~-rl~~pLv~L~ss~~eiqyvaLr~I~~i~~  326 (746)
T PTZ00429        295 CTV-RVNTALLTLSRRDAETQYIVCKNIHALLV  326 (746)
T ss_pred             HHH-HHHHHHHHhhCCCccHHHHHHHHHHHHHH
Confidence            211 12267777764333477666666655543

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.35  E-value=0.029  Score=66.44  Aligned_cols=324  Identities=15%  Similarity=0.088  Sum_probs=175.1

Q ss_pred             HHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcC
Q 041643          168 ISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVL  246 (576)
Q Consensus       168 i~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G  246 (576)
                      +..++.. ..-.|..-+..+..+++. +-..   ---+.++-|.+-.++++ +..|+-|...|+.+...-.++..=.-..
T Consensus        85 L~~~~~E~~~~vr~k~~dviAeia~~-~l~e---~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~~~~~  159 (1075)
T KOG2171|consen   85 LEIIQSETEPSVRHKLADVIAEIARN-DLPE---KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQPHLDD  159 (1075)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHh-cccc---chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccchhHHH
Confidence            4444444 445667777888888875 2111   12234666677778888 9999999999999987544433111112


Q ss_pred             CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc-CCchhHHHhhccccccCCCc---chh------------
Q 041643          247 GVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIALDLPK---PES------------  310 (576)
Q Consensus       247 avp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~-g~I~~LV~LL~~~t~~~~~~---~i~------------  310 (576)
                      ..+.|.+-+.+++..++..|+.|+..++...+......-.. -.+|.++..+..-...++..   .+.            
T Consensus       160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk  239 (1075)
T KOG2171|consen  160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK  239 (1075)
T ss_pred             HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH
Confidence            45677777777766699999999999886543333333222 35666777664221111111   000            


Q ss_pred             -hhhHHHHHHhhhcccccccc-----------------ccCC--CCCCCCCCCCCCCCcccc-----c----------cc
Q 041643          311 -AKTTIHSLVQMKKEMTEKST-----------------NVTN--NSDGSSRGGHGQHYNKKD-----R----------EL  355 (576)
Q Consensus       311 -~~~si~~~v~~~~~~~~~~~-----------------~~~~--~~~~~~~~~~g~~~~~~~-----~----------e~  355 (576)
                       .+..+..++........+..                 ..+|  .+..-..+..=++.+.+.     .          |.
T Consensus       240 ~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~de  319 (1075)
T KOG2171|consen  240 LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDE  319 (1075)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccc
Confidence             01111111111111100000                 0000  000000000000000000     0          00


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHh
Q 041643          356 ETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLA  435 (576)
Q Consensus       356 ~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa  435 (576)
                      +|.++   -...|..+|-.||.+=..                   .-.+.-+++.+-.+|.+.+ ...+..++.+|+.++
T Consensus       320 d~~~~---~~~~A~~~lDrlA~~L~g-------------------~~v~p~~~~~l~~~l~S~~-w~~R~AaL~Als~i~  376 (1075)
T KOG2171|consen  320 DDEET---PYRAAEQALDRLALHLGG-------------------KQVLPPLFEALEAMLQSTE-WKERHAALLALSVIA  376 (1075)
T ss_pred             ccccC---cHHHHHHHHHHHHhcCCh-------------------hhehHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence            00000   012344444444432100                   1112235566777787765 777889999999998


Q ss_pred             cCCchhh----hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccCh-h-HHHHH
Q 041643          436 KTFPAKE----KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD-R-AQVHG  509 (576)
Q Consensus       436 ~~~~~~~----~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d-~-vq~~A  509 (576)
                      ....+.=    .++++..+..|++.++.|+-.|+.||+.++++   ..++-++.-. +--++.|+..+.+.. . +|.+|
T Consensus       377 EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~std---l~p~iqk~~~-e~l~~aL~~~ld~~~~~rV~ahA  452 (1075)
T KOG2171|consen  377 EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTD---LQPEIQKKHH-ERLPPALIALLDSTQNVRVQAHA  452 (1075)
T ss_pred             cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhh---hcHHHHHHHH-HhccHHHHHHhcccCchHHHHHH
Confidence            7654421    14677788889999999999999999999864   2355555443 456778899998654 3 89998


Q ss_pred             HHHHHHHhcccCch
Q 041643          510 LVFLCYLALSAGNS  523 (576)
Q Consensus       510 ~~~L~~lal~~~~~  523 (576)
                      +.++-+.+...+.+
T Consensus       453 a~al~nf~E~~~~~  466 (1075)
T KOG2171|consen  453 AAALVNFSEECDKS  466 (1075)
T ss_pred             HHHHHHHHHhCcHH
Confidence            88888876555443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.27  E-value=0.00038  Score=53.59  Aligned_cols=55  Identities=22%  Similarity=0.156  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHH
Q 041643          219 PDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARM  273 (576)
Q Consensus       219 ~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~L  273 (576)
                      +..+..|+++|++++........-....++|.|+.+|++++++|+..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4688999999999987665554446677999999999999999999999999876

...

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.26  E-value=0.00091  Score=55.87  Aligned_cols=84  Identities=27%  Similarity=0.391  Sum_probs=66.5

Q ss_pred             HHHHHH-hcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHH
Q 041643          166 SFISTI-QMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVD  244 (576)
Q Consensus       166 ~li~~L-~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~  244 (576)
                      .++..| +..+...|..|+..|+.+-   +        ...+|.|+++|++.+ +.++..|+++|+.+.          .
T Consensus         3 ~L~~~l~~~~~~~vr~~a~~~L~~~~---~--------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~----------~   60 (88)
T PF13646_consen    3 ALLQLLQNDPDPQVRAEAARALGELG---D--------PEAIPALIELLKDED-PMVRRAAARALGRIG----------D   60 (88)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHCCT---H--------HHHHHHHHHHHTSSS-HHHHHHHHHHHHCCH----------H
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcC---C--------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhC----------C
Confidence            457878 7778999999999998542   1        135899999998878 999999999999884          2


Q ss_pred             cCCHHHHHHhhcCCC-hhHHHHHHHHHH
Q 041643          245 VLGVPIIVSVLGEAP-VKVQVAVANLVA  271 (576)
Q Consensus       245 ~Gavp~LV~lL~s~~-~~vq~~Aa~aL~  271 (576)
                      ..+++.|.+++.+.+ ..++..|+.+|+
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            338999999997754 567888888875

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.21  E-value=0.013  Score=61.56  Aligned_cols=186  Identities=27%  Similarity=0.356  Sum_probs=130.9

Q ss_pred             CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHH
Q 041643          204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEE  283 (576)
Q Consensus       204 GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~  283 (576)
                      ..++.++++|.+.+ ..++..|+++|+.+..    .+      ++|.+.++|.+.+..++..|+.+|+.+-.  +     
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~----~~------av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~-----  104 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGS----EE------AVPLLRELLSDEDPRVRDAAADALGELGD--P-----  104 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch----HH------HHHHHHHHhcCCCHHHHHHHHHHHHccCC--h-----
Confidence            57899999999987 9999999999766543    33      78999999999999999999998877652  2     


Q ss_pred             HHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHH
Q 041643          284 FVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAK  363 (576)
Q Consensus       284 i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~  363 (576)
                          ..+++|+.+|..+                                                       ++.    .
T Consensus       105 ----~a~~~li~~l~~d-------------------------------------------------------~~~----~  121 (335)
T COG1413         105 ----EAVPPLVELLEND-------------------------------------------------------ENE----G  121 (335)
T ss_pred             ----hHHHHHHHHHHcC-------------------------------------------------------CcH----h
Confidence                3579999999631                                                       011    1


Q ss_pred             HHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcC---------Ch--hhHHHHHHHHH
Q 041643          364 VRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEES---------DA--MLQTPAIRSIG  432 (576)
Q Consensus       364 ~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~---------~~--~lq~~a~~aLg  432 (576)
                      ++..|+++|..+-..                           ..++.|+..+.+..         .+  .++..++.+++
T Consensus       122 vR~~aa~aL~~~~~~---------------------------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~  174 (335)
T COG1413         122 VRAAAARALGKLGDE---------------------------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG  174 (335)
T ss_pred             HHHHHHHHHHhcCch---------------------------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH
Confidence            346778888766321                           12445555554322         01  35566777777


Q ss_pred             HHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHH
Q 041643          433 CLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLV  511 (576)
Q Consensus       433 nLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~  511 (576)
                      .+-      +...+++|...|+..+..|+..|+.+|+.+....             ....+.+...+...+. ++..++.
T Consensus       175 ~~~------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------------~~~~~~l~~~~~~~~~~vr~~~~~  235 (335)
T COG1413         175 ELG------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------------VEAADLLVKALSDESLEVRKAALL  235 (335)
T ss_pred             HcC------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------------hhHHHHHHHHhcCCCHHHHHHHHH
Confidence            763      4567999999999999999999999999886421             2344666677766655 6666666


Q ss_pred             HHHHH
Q 041643          512 FLCYL  516 (576)
Q Consensus       512 ~L~~l  516 (576)
                      +|.++
T Consensus       236 ~l~~~  240 (335)
T COG1413         236 ALGEI  240 (335)
T ss_pred             Hhccc
Confidence            66555

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.20  E-value=0.027  Score=60.40  Aligned_cols=285  Identities=17%  Similarity=0.129  Sum_probs=166.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCC-HHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcC
Q 041643          168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGG-ILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVL  246 (576)
Q Consensus       168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~Gg-IppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G  246 (576)
                      +.+|..++.-.-..+++.+.-++...... ..-.+-.. -.-|-.+|.++++++.-.-|+++|..+...++.|-..+.+.
T Consensus       120 l~ll~r~d~~iv~~~~~Ils~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~ad  198 (442)
T KOG2759|consen  120 LNLLNRQDTFIVEMSFRILSKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIAD  198 (442)
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecC
Confidence            56777777666666777777777543221 11101111 23445566665547777889999999999999999999999


Q ss_pred             CHHHHHHhhcC--CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643          247 GVPIIVSVLGE--APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE  324 (576)
Q Consensus       247 avp~LV~lL~s--~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~  324 (576)
                      ++..++..|.+  ....+|.+...++.-|..+.+-+ +.+...+.|+.|+.+++..+..    .+. ..-+..    -.+
T Consensus       199 g~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KE----KV~-Rivlai----~~N  268 (442)
T KOG2759|consen  199 GVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKE----KVT-RIVLAI----FRN  268 (442)
T ss_pred             cchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHH----HHH-HHHHHH----HHH
Confidence            99999999943  45788999999999999765544 6668889999999999765310    011 000000    000


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHH-----HHHHHHHHHHHhhcCCcccchhcccchHHHHhhhcc
Q 041643          325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAK-----VRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKT  399 (576)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~-----~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~  399 (576)
                      .                    ++   +   .+|.+++-+     ++..+-.++-.|....=       ++.||+..    
T Consensus       269 l--------------------l~---k---~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky-------sDEDL~~d----  311 (442)
T KOG2759|consen  269 L--------------------LD---K---GPDRETKKDIASQMVLCKVLKTLQSLEERKY-------SDEDLVDD----  311 (442)
T ss_pred             H--------------------hc---c---CchhhHHHHHHHHHHhcCchHHHHHHHhcCC-------CcHHHHHH----
Confidence            0                    00   0   012222200     00111222222221100       01233321    


Q ss_pred             CchhHHHHHHHHHHHhhhcCChhhHHHHHH-------HHHHHhcCCc---------------hhhhCcHHHHHHhhcCCC
Q 041643          400 NSPAAKAVLDQLLRLIHEESDAMLQTPAIR-------SIGCLAKTFP---------------AKEKRMIGPLVALLSNRN  457 (576)
Q Consensus       400 ~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~-------aLgnLa~~~~---------------~~~~~~I~~LV~LL~~~~  457 (576)
                              ++.|-.-|.+    .+|.-+..       --|.|.=...               +.+-.++.-|+++|...+
T Consensus       312 --------i~~L~e~L~~----svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~  379 (442)
T KOG2759|consen  312 --------IEFLTEKLKN----SVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN  379 (442)
T ss_pred             --------HHHHHHHHHH----HHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC
Confidence                    2222222211    11110000       0011110000               001136788999997654


Q ss_pred             -HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHH
Q 041643          458 -VDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYL  516 (576)
Q Consensus       458 -~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~l  516 (576)
                       +.+..-|+.=|+.+.-    .+|+-+..|.+-||=..+++||.+.|+ |..+|+.++-.|
T Consensus       380 Dp~iL~VAc~DIge~Vr----~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l  436 (442)
T KOG2759|consen  380 DPIILCVACHDIGEYVR----HYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL  436 (442)
T ss_pred             CCceeehhhhhHHHHHH----hCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence             7777789999999973    247888899999999999999999988 998888877544

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.18  E-value=0.011  Score=70.00  Aligned_cols=174  Identities=25%  Similarity=0.284  Sum_probs=115.4

Q ss_pred             HHHHHH----HHccCCChHHHHHHHHHHHHhhcCC-chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC-hH
Q 041643          206 ILPLLK----LLKEAASPDAQTAAANALFNIATDQ-ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELD-SI  279 (576)
Q Consensus       206 IppLV~----LL~~g~~~~~q~~AA~AL~nLa~~~-~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~-~~  279 (576)
                      .||++.    +|.+.+ ..-++.|..||.-++... +.-.... --.++..+..|+++++.||..|..+++.++.+- |+
T Consensus       346 ~p~~~~~l~~~l~S~~-w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~  423 (1075)
T KOG2171|consen  346 LPPLFEALEAMLQSTE-WKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE  423 (1075)
T ss_pred             hHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH
Confidence            566655    455666 777788888888887743 2222211 235677778889999999999999999999763 33


Q ss_pred             HHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHH
Q 041643          280 AQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPE  359 (576)
Q Consensus       280 ~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~  359 (576)
                      .+ .-..+-.+|.|+..+.+.-                                                       .+ 
T Consensus       424 iq-k~~~e~l~~aL~~~ld~~~-------------------------------------------------------~~-  446 (1075)
T KOG2171|consen  424 IQ-KKHHERLPPALIALLDSTQ-------------------------------------------------------NV-  446 (1075)
T ss_pred             HH-HHHHHhccHHHHHHhcccC-------------------------------------------------------ch-
Confidence            33 2333456667777774320                                                       11 


Q ss_pred             HHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc
Q 041643          360 VKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP  439 (576)
Q Consensus       360 vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~  439 (576)
                         .++.+|+-||-+++..+.+.        .+-        |.-..+++.++.+|..+.++.+|+.++.+||..|..-.
T Consensus       447 ---rV~ahAa~al~nf~E~~~~~--------~l~--------pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~  507 (1075)
T KOG2171|consen  447 ---RVQAHAAAALVNFSEECDKS--------ILE--------PYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ  507 (1075)
T ss_pred             ---HHHHHHHHHHHHHHHhCcHH--------HHH--------HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence               15678999999998776543        121        23345666444455444558999999999999986332


Q ss_pred             hh----hhCcHHHHHHhhcCCC
Q 041643          440 AK----EKRMIGPLVALLSNRN  457 (576)
Q Consensus       440 ~~----~~~~I~~LV~LL~~~~  457 (576)
                      ..    -.+.+|.|.+.|.+.+
T Consensus       508 ~~F~pY~d~~Mp~L~~~L~n~~  529 (1075)
T KOG2171|consen  508 EKFIPYFDRLMPLLKNFLQNAD  529 (1075)
T ss_pred             hhhHhHHHHHHHHHHHHHhCCC
Confidence            21    2357899999997766

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.06  E-value=0.031  Score=62.80  Aligned_cols=79  Identities=13%  Similarity=0.095  Sum_probs=70.9

Q ss_pred             hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHH
Q 041643          202 EEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIA  280 (576)
Q Consensus       202 ~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~  280 (576)
                      ...++.|||++|..+. ..++..+..||.||.. .+.-+..+++.|+|..+..++.+.+..++..+.|+|.++..++.+-
T Consensus       417 ~~dv~~plvqll~dp~-~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~  495 (678)
T KOG1293|consen  417 RNDVAQPLVQLLMDPE-IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEE  495 (678)
T ss_pred             cchhHHHHHHHhhCcc-hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHH
Confidence            4568999999998888 8999999999999998 4788999999999999999999999999999999999999876544


Q ss_pred             H
Q 041643          281 Q  281 (576)
Q Consensus       281 r  281 (576)
                      +
T Consensus       496 ~  496 (678)
T KOG1293|consen  496 E  496 (678)
T ss_pred             H
Confidence            3

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.0038  Score=71.40  Aligned_cols=138  Identities=19%  Similarity=0.166  Sum_probs=112.6

Q ss_pred             hHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCc
Q 041643          159 PILAWVWSFISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE  237 (576)
Q Consensus       159 ~i~~~v~~li~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~  237 (576)
                      |+..+|-.+|++|+.. +.+....|+++|.+|+..-++....++++|+||.|+.=|..=...++-|.+..||-.|+.  +
T Consensus       208 pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR--~  285 (1051)
T KOG0168|consen  208 PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR--R  285 (1051)
T ss_pred             cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh--h
Confidence            4566777789999987 789999999999999988888899999999999999877665548899999999999987  4


Q ss_pred             hHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCchhHHHhhccc
Q 041643          238 TVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAEL-DSIAQEEFVRENVTRSLISLLCMD  300 (576)
Q Consensus       238 ~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~-~~~~r~~i~~~g~I~~LV~LL~~~  300 (576)
                      .-++|.++|++...+.+|.-=+..+|..|..+.+|++.. .++.=..++  .++|.|-.+|...
T Consensus       286 H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~  347 (1051)
T KOG0168|consen  286 HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQ  347 (1051)
T ss_pred             ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhc
Confidence            557899999999999888766678899999999998863 122222333  4789999999764

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.61  Score=53.89  Aligned_cols=316  Identities=17%  Similarity=0.196  Sum_probs=185.1

Q ss_pred             CCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHH
Q 041643          150 SLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANAL  229 (576)
Q Consensus       150 ~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL  229 (576)
                      .+..|.+.|=++.+.-+...+|+..++-.|.+|+-++..+-+..++ -..+    -+++.-++|.+.+ .-+-..+..-+
T Consensus       130 alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~-l~e~----f~~~~~~lL~ek~-hGVL~~~l~l~  203 (866)
T KOG1062|consen  130 ALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD-LVEH----FVIAFRKLLCEKH-HGVLIAGLHLI  203 (866)
T ss_pred             HhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch-HHHH----hhHHHHHHHhhcC-CceeeeHHHHH
Confidence            4556777777777777767788998999999998888777665333 2222    4678888887766 55555556666


Q ss_pred             HHhhc-CCchHHHHHHcCCHHHHHHhhcC---------------CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhH
Q 041643          230 FNIAT-DQETVRFIVDVLGVPIIVSVLGE---------------APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSL  293 (576)
Q Consensus       230 ~nLa~-~~~~~~~iv~~Gavp~LV~lL~s---------------~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~L  293 (576)
                      +.|+. +++.-...-+  .++-||..|+.               .++-+|.+....|.-|-.++++.-+.+-.     .|
T Consensus       204 ~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iL  276 (866)
T KOG1062|consen  204 TELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----IL  276 (866)
T ss_pred             HHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HH
Confidence            77776 3444333322  67778877741               34568888888888787777666654431     22


Q ss_pred             HHhhccccccCCCcchhhhh---HHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHH
Q 041643          294 ISLLCMDIALDLPKPESAKT---TIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAE  370 (576)
Q Consensus       294 V~LL~~~t~~~~~~~i~~~~---si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~  370 (576)
                      -+... .|  +-++++.+..   +++++.+...+                                 +    .+++-|+.
T Consensus       277 aqvat-nt--dsskN~GnAILYE~V~TI~~I~~~---------------------------------~----~Lrvlain  316 (866)
T KOG1062|consen  277 AQVAT-NT--DSSKNAGNAILYECVRTIMDIRSN---------------------------------S----GLRVLAIN  316 (866)
T ss_pred             HHHHh-cc--cccccchhHHHHHHHHHHHhccCC---------------------------------c----hHHHHHHH
Confidence            23332 22  1222222111   33333222221                                 1    13345666


Q ss_pred             HHHHhhcCCcccc----------------------------hhcccchHHHHhhh-----ccCchhHHHHHHHHHHHhhh
Q 041643          371 ALWKLSKGCLLSL----------------------------WSAESNAELRRSAF-----KTNSPAAKAVLDQLLRLIHE  417 (576)
Q Consensus       371 ALw~La~g~~~~I----------------------------avae~~~~lrr~a~-----k~~s~a~~~vV~~Ll~lL~~  417 (576)
                      .|.++-.+.+.||                            ++-+.+.-+||-++     ..|+.-....|..|+.+|.+
T Consensus       317 iLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~  396 (866)
T KOG1062|consen  317 ILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLES  396 (866)
T ss_pred             HHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHh
Confidence            6666554444442                            33334445566453     24444456788899999998


Q ss_pred             cCChhhHHHHHHHHHHHhcCCch-h----h--------------hCcHHHHHHhhcCC----------------------
Q 041643          418 ESDAMLQTPAIRSIGCLAKTFPA-K----E--------------KRMIGPLVALLSNR----------------------  456 (576)
Q Consensus       418 ~~~~~lq~~a~~aLgnLa~~~~~-~----~--------------~~~I~~LV~LL~~~----------------------  456 (576)
                      .+ +++...+..-|..++..|.- .    +              ..++..|++++.++                      
T Consensus       397 ~d-~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~  475 (866)
T KOG1062|consen  397 SD-EDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLL  475 (866)
T ss_pred             cc-HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhh
Confidence            75 88999999999999876531 0    0              11345555555444                      


Q ss_pred             ---CHHHHHHHHHHHHhhc----CCCCCCCHHHHHHHHHCCCcHhHHHhhccC--hh-HHHHHHHHHHHHhcccCc
Q 041643          457 ---NVDVATEAVIALSKFV----SPDNFNRSEHSKAIIEFDGVPPLMRLLKIS--DR-AQVHGLVFLCYLALSAGN  522 (576)
Q Consensus       457 ---~~~V~~eAa~AL~nla----~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~--d~-vq~~A~~~L~~lal~~~~  522 (576)
                         .+...+-|+|+|+...    .+.|   .+.-..+-+...+..|..++.+.  +. ++-+|+.+|..|+.....
T Consensus       476 ~is~e~l~qVa~W~IGEYGdlll~~~~---~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s  548 (866)
T KOG1062|consen  476 DISQEPLLQVASWCIGEYGDLLLDGAN---EEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHS  548 (866)
T ss_pred             hhhhhhHHHHHHHHhhhhhHHhhcCcc---ccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccc
Confidence               3345566888888543    2111   01111233345677788888643  34 677899999888765554

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.80  E-value=0.0018  Score=49.80  Aligned_cols=50  Identities=24%  Similarity=0.358  Sum_probs=40.8

Q ss_pred             hhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhh
Q 041643          422 MLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSNRNVDVATEAVIALSKF  471 (576)
Q Consensus       422 ~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nl  471 (576)
                      .++..|+.+||+++...+..    ...++|.|+.+|++.+.+|+..|+|||+++
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46778999999988655432    235789999999999999999999999975

...

>PF05536 Neurochondrin: Neurochondrin

Probab=96.46  E-value=0.025  Score=63.95  Aligned_cols=134  Identities=13%  Similarity=0.197  Sum_probs=105.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCccc---HHHHHhcCCHHHHHHHHccCCC------hHHHHHHHHHHHHhhc
Q 041643          164 VWSFISTIQMGQIKSRVDAANELASLARDNNRN---RKIIVEEGGILPLLKLLKEAAS------PDAQTAAANALFNIAT  234 (576)
Q Consensus       164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~---~~~I~~~GgIppLV~LL~~g~~------~~~q~~AA~AL~nLa~  234 (576)
                      +..-+.+|+..+++.|.-+..-+..+...++.+   ++.|.++=|..-|=+||+++..      ...+.-|...|...+.
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            345578999999999998888888888765532   4568888888889999998532      3445677777777777


Q ss_pred             CCchH--HHHHHcCCHHHHHHhhcCCCh-hHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccc
Q 041643          235 DQETV--RFIVDVLGVPIIVSVLGEAPV-KVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMD  300 (576)
Q Consensus       235 ~~~~~--~~iv~~Gavp~LV~lL~s~~~-~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~  300 (576)
                      +++..  ..++  +-||.|++++.+++. ++...+..+|..+++ .++.++.+.+.|+|+.|++.+.+.
T Consensus        87 ~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~~  152 (543)
T PF05536_consen   87 DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPNQ  152 (543)
T ss_pred             ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHhC
Confidence            66543  4454  469999999988776 899999999999995 578899999999999999998764

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=96.43  E-value=0.011  Score=54.50  Aligned_cols=96  Identities=13%  Similarity=0.039  Sum_probs=84.4

Q ss_pred             CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHH
Q 041643          204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEE  283 (576)
Q Consensus       204 GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~  283 (576)
                      |-+..||.=..+.++.+.|+.-..-|.|-+-+|-|-..+.+..++..||+-|..+++.+.+.+.+.|+|++. ++.+..-
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~   94 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKF   94 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHH
Confidence            345667776677666899998888889999999999999999999999999999999999999999999996 4678889


Q ss_pred             HHhcCCchhHHHhhccc
Q 041643          284 FVRENVTRSLISLLCMD  300 (576)
Q Consensus       284 i~~~g~I~~LV~LL~~~  300 (576)
                      |.+.++||..+..|++.
T Consensus        95 I~ea~g~plii~~lssp  111 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSP  111 (173)
T ss_pred             HHHhcCCceEEeecCCC
Confidence            99999999999988764

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.42  E-value=0.77  Score=53.08  Aligned_cols=276  Identities=14%  Similarity=0.111  Sum_probs=155.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcC
Q 041643          168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVL  246 (576)
Q Consensus       168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~G  246 (576)
                      ..-|++++.-..--|..+|++++.  ++-...     .-|-..+||+..+ +-+++.|+-|+..+-. .++..+-     
T Consensus       113 knDL~s~nq~vVglAL~alg~i~s--~Emard-----lapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~-----  179 (866)
T KOG1062|consen  113 KNDLNSSNQYVVGLALCALGNICS--PEMARD-----LAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEH-----  179 (866)
T ss_pred             HhhccCCCeeehHHHHHHhhccCC--HHHhHH-----hhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHH-----
Confidence            334455544444568888998875  333222     2355566888888 9999999999988766 4444442     


Q ss_pred             CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccc
Q 041643          247 GVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMT  326 (576)
Q Consensus       247 avp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~  326 (576)
                      -++.+.++|.+.+..|-..+...+..|+..+++.-..+.+  .++.||..|+.=+--.++                    
T Consensus       180 f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~ys--------------------  237 (866)
T KOG1062|consen  180 FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYS--------------------  237 (866)
T ss_pred             hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCC--------------------
Confidence            4678888998887777777777788888877766666665  788888888632100011                    


Q ss_pred             ccccccCCCCCCCCCCCCCCCC-c--------ccccccCCHHHHHHHHHHHHHHHHHhhcC-----Cccc---------c
Q 041643          327 EKSTNVTNNSDGSSRGGHGQHY-N--------KKDRELETPEVKAKVRIACAEALWKLSKG-----CLLS---------L  383 (576)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~-~--------~~~~e~~d~~vk~~~k~~Aa~ALw~La~g-----~~~~---------I  383 (576)
                                |...  -+|++- .        .+.....|+...    ..-..-|...+.+     |.+|         |
T Consensus       238 ----------peyd--v~gi~dPFLQi~iLrlLriLGq~d~daS----d~M~DiLaqvatntdsskN~GnAILYE~V~TI  301 (866)
T KOG1062|consen  238 ----------PEYD--VHGISDPFLQIRILRLLRILGQNDADAS----DLMNDILAQVATNTDSSKNAGNAILYECVRTI  301 (866)
T ss_pred             ----------CccC--ccCCCchHHHHHHHHHHHHhcCCCccHH----HHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence                      0000  012220 0        001111222221    1223334444432     1111         1


Q ss_pred             hhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHH
Q 041643          384 WSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATE  463 (576)
Q Consensus       384 avae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~e  463 (576)
                      .-++.++.||-           ..++-|-++|.+.| -.+++-|+..|.......+..-.+==..+++.|++.+..+++.
T Consensus       302 ~~I~~~~~Lrv-----------lainiLgkFL~n~d-~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrr  369 (866)
T KOG1062|consen  302 MDIRSNSGLRV-----------LAINILGKFLLNRD-NNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRR  369 (866)
T ss_pred             HhccCCchHHH-----------HHHHHHHHHhcCCc-cceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            22233334443           34566667776654 5667777777777765444322222356888899999999999


Q ss_pred             HHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHh
Q 041643          464 AVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLA  517 (576)
Q Consensus       464 Aa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~la  517 (576)
                      |-.-+..+.-.      .+.+.|++     -|+..|...|+ .+..-+.-+|.++
T Consensus       370 alELs~~lvn~------~Nv~~mv~-----eLl~fL~~~d~~~k~~~as~I~~la  413 (866)
T KOG1062|consen  370 ALELSYALVNE------SNVRVMVK-----ELLEFLESSDEDFKADIASKIAELA  413 (866)
T ss_pred             HHHHHHHHhcc------ccHHHHHH-----HHHHHHHhccHHHHHHHHHHHHHHH
Confidence            88887777533      23455543     35555555554 4444333333343

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.24  E-value=0.017  Score=50.77  Aligned_cols=66  Identities=24%  Similarity=0.303  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHcc-CCChHHHHHHHHHHHHhhc-CCchHHHHHH
Q 041643          179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKE-AASPDAQTAAANALFNIAT-DQETVRFIVD  244 (576)
Q Consensus       179 k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~-g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~  244 (576)
                      |..-.+.|++|+..++.++..|.+.||||.++..-.- +.+|-.++.|.+|+.||.. +++|++.|.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            5566778999999999999999999999999996542 2339999999999999998 5677775553

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=2.9  Score=49.92  Aligned_cols=342  Identities=13%  Similarity=0.122  Sum_probs=181.8

Q ss_pred             HHHHHHHHHHhhcCcccHHHH----HhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhh
Q 041643          180 VDAANELASLARDNNRNRKII----VEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVL  255 (576)
Q Consensus       180 ~~AA~~L~~La~~~~~~~~~I----~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL  255 (576)
                      +.+..+|.||-+.+++-....    .=.|-.+.+..+|...+.+..|.-|...+..++.+.+-...|++.|.+..|..+|
T Consensus      1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lL 1822 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLL 1822 (2235)
T ss_pred             HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHH
Confidence            456677888887776432211    1236788888888877658999999999999999999999999999999999999


Q ss_pred             cCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccccccc-ccCC
Q 041643          256 GEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKST-NVTN  334 (576)
Q Consensus       256 ~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~-~~~~  334 (576)
                      .+.+ ..++.+..+|..|++.. +.-.+-.++|++..+.+++-..+   +.-.-+...++-.-..+......... ....
T Consensus      1823 HS~P-S~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~---~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1823 HSQP-SMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTN---SDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred             hcCh-HHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccC---cHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence            8764 66788999999999764 55556667788777777764332   11000011122111111111100000 0000


Q ss_pred             CCCC-C-CCCCCCCCCc--ccccccCCHHHH------HH----HHHHHHHHHHHhhcCCccc--c--------------h
Q 041643          335 NSDG-S-SRGGHGQHYN--KKDRELETPEVK------AK----VRIACAEALWKLSKGCLLS--L--------------W  384 (576)
Q Consensus       335 ~~~~-~-~~~~~g~~~~--~~~~e~~d~~vk------~~----~k~~Aa~ALw~La~g~~~~--I--------------a  384 (576)
                      ..|. + +....|-+..  .-.+..|.||.-      +.    +.+++..---+=-+|+.-+  .              +
T Consensus      1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred             hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence            0110 0 0000000000  000111222211      00    0011111000000111000  0              1


Q ss_pred             hcccchHHHHhhhccCchh------HHHHHHHHHHHhhhcCChhhHHH--HHHHHHHHhcCCchh-----hhCcHHHHHH
Q 041643          385 SAESNAELRRSAFKTNSPA------AKAVLDQLLRLIHEESDAMLQTP--AIRSIGCLAKTFPAK-----EKRMIGPLVA  451 (576)
Q Consensus       385 vae~~~~lrr~a~k~~s~a------~~~vV~~Ll~lL~~~~~~~lq~~--a~~aLgnLa~~~~~~-----~~~~I~~LV~  451 (576)
                      |-  |--+|+-...|..|.      -.+++++++.++.... +...++  -..|+-+|.+..++-     .-|-+|.++.
T Consensus      1978 VG--G~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~-peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1978 VG--GSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPT-PEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred             cc--hhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCC-cccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence            11  112333111111111      1355677777775433 322222  234566777666553     2367899999


Q ss_pred             hhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChhHHHHHHHHHHHHhcccCchHHHH----
Q 041643          452 LLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALE----  527 (576)
Q Consensus       452 LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~vq~~A~~~L~~lal~~~~~~~l~----  527 (576)
                      .+...+..+-+.|.+.|-.++.++  .|   .+++..-.++.+++.++...-..---|+.+|-.+-.  .+..+++    
T Consensus      2055 Am~~~n~s~P~SaiRVlH~Lsen~--~C---~~AMA~l~~i~~~m~~mkK~~~~~GLA~EalkR~~~--r~~~eLVAQ~L 2127 (2235)
T KOG1789|consen 2055 AMCLQNTSAPRSAIRVLHELSENQ--FC---CDAMAQLPCIDGIMKSMKKQPSLMGLAAEALKRLMK--RNTGELVAQML 2127 (2235)
T ss_pred             HHHhcCCcCcHHHHHHHHHHhhcc--HH---HHHHhccccchhhHHHHHhcchHHHHHHHHHHHHHH--HhHHHHHHHHh
Confidence            886666666688999999887543  23   678888888889999887543322246666666632  3444433    


Q ss_pred             hccchhhHh
Q 041643          528 QARALNALE  536 (576)
Q Consensus       528 ~~~~l~~Le  536 (576)
                      +.|.+|.|.
T Consensus      2128 K~gLvpyLL 2136 (2235)
T KOG1789|consen 2128 KCGLVPYLL 2136 (2235)
T ss_pred             ccCcHHHHH
Confidence            467777765

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.01  E-value=0.034  Score=48.89  Aligned_cols=67  Identities=13%  Similarity=0.193  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhc--CCChhHHHHHHHHHHHHhcCChHHHHHHHhcC
Q 041643          222 QTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLG--EAPVKVQVAVANLVARMAELDSIAQEEFVREN  288 (576)
Q Consensus       222 q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~--s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g  288 (576)
                      +..-.+.|+||+. +++++..+.+.|+||.+.....  ..++-+++.|.+++-||..+++++|+.|++-.
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~   72 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE   72 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence            4456778999998 5788899999999999999874  35688999999999999999999999888654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.86  E-value=0.21  Score=58.99  Aligned_cols=223  Identities=19%  Similarity=0.242  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHhhcCCch----HHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhh
Q 041643          222 QTAAANALFNIATDQET----VRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL  297 (576)
Q Consensus       222 q~~AA~AL~nLa~~~~~----~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL  297 (576)
                      |..=.+||.-|+..-|-    ...-..-|..|..++||++...+++-.-+..=+.|-+.++.||..+.++++=...++.|
T Consensus       484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL  563 (1387)
T KOG1517|consen  484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL  563 (1387)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence            44556677777764332    23334679999999999999888887766666666667899999999888766555555


Q ss_pred             ccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhc
Q 041643          298 CMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSK  377 (576)
Q Consensus       298 ~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~  377 (576)
                      ..++                                           .+          ++    +.|.+||..|.-+.+
T Consensus       564 ~~~~-------------------------------------------~~----------~~----EqrtmaAFVLAviv~  586 (1387)
T KOG1517|consen  564 DPSQ-------------------------------------------AI----------PP----EQRTMAAFVLAVIVR  586 (1387)
T ss_pred             cCcC-------------------------------------------CC----------CH----HHHHHHHHHHHHHHc
Confidence            3210                                           11          22    357899999999987


Q ss_pred             CCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHh
Q 041643          378 GCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVAL  452 (576)
Q Consensus       378 g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~L  452 (576)
                      |-.-       +   +.+.+      .++++...+..+.+...+-+..=++-+||.|=.++..     .+.++...|+.+
T Consensus       587 nf~l-------G---Q~acl------~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~  650 (1387)
T KOG1517|consen  587 NFKL-------G---QKACL------NGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL  650 (1387)
T ss_pred             ccch-------h---HHHhc------cccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH
Confidence            6321       0   11111      1245555666665532244555566688888666653     234567899999


Q ss_pred             hcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHH------------HHCCCc---HhHHHhhccChh-HHHHHHHHHHHH
Q 041643          453 LSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAI------------IEFDGV---PPLMRLLKISDR-AQVHGLVFLCYL  516 (576)
Q Consensus       453 L~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~I------------v~~ggi---~~Lv~LL~~~d~-vq~~A~~~L~~l  516 (576)
                      |+..-++|+..|..||+.|..++....+++...+            +|.-.+   -.|+.++..+++ +..+-..+|...
T Consensus       651 LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~  730 (1387)
T KOG1517|consen  651 LSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF  730 (1387)
T ss_pred             hcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            9999999999999999999764311011211111            222222   267777777777 665555545444


Q ss_pred             h
Q 041643          517 A  517 (576)
Q Consensus       517 a  517 (576)
                      .
T Consensus       731 ~  731 (1387)
T KOG1517|consen  731 V  731 (1387)
T ss_pred             H
Confidence            3

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.84  E-value=1.3  Score=46.35  Aligned_cols=115  Identities=17%  Similarity=0.220  Sum_probs=86.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHH-hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHH
Q 041643          166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIV-EEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVD  244 (576)
Q Consensus       166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~-~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~  244 (576)
                      +++..|.+-++..|..|...+..|...  ..+..-- +.-.++.|.+|++... +  -+.||+||.|++.+.+-++.+..
T Consensus         7 elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~~~l~~~ll~   81 (353)
T KOG2973|consen    7 ELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQKEELRKKLLQ   81 (353)
T ss_pred             HHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhhHHHHHHHHH
Confidence            457888999999999999889888764  2222211 2334788999987655 4  66899999999999999998887


Q ss_pred             cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh
Q 041643          245 VLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVR  286 (576)
Q Consensus       245 ~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~  286 (576)
                      . -+..++..+-++....-...+..|.|++..+..+......
T Consensus        82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~  122 (353)
T KOG2973|consen   82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTN  122 (353)
T ss_pred             H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHh
Confidence            7 7777777776665556667788899999987777655443

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.83  E-value=0.84  Score=52.25  Aligned_cols=135  Identities=14%  Similarity=0.165  Sum_probs=101.9

Q ss_pred             CCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHH
Q 041643          150 SLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANAL  229 (576)
Q Consensus       150 ~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL  229 (576)
                      |+..+...|-.+-+..+.+.+|.+..+=.|..|.-.|+.+--   .|-+.+  ...+|.|++=|++++ |.+|-.|+..+
T Consensus       132 GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFL---kYPeAl--r~~FprL~EkLeDpD-p~V~SAAV~VI  205 (877)
T KOG1059|consen  132 GLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFL---KYPEAL--RPCFPRLVEKLEDPD-PSVVSAAVSVI  205 (877)
T ss_pred             ccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH---hhhHhH--hhhHHHHHHhccCCC-chHHHHHHHHH
Confidence            566667677778888899999999988889888877776543   344555  347899999999999 99999999999


Q ss_pred             HHhhc-CCchHHHHHHcCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccc
Q 041643          230 FNIAT-DQETVRFIVDVLGVPIIVSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMD  300 (576)
Q Consensus       230 ~nLa~-~~~~~~~iv~~Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~  300 (576)
                      +.||. +|.|--.+     -|.|.++|-+ .+.-+-....-..++|+--.|....     ..|+||.+|+.+.
T Consensus       206 CELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT  268 (877)
T KOG1059|consen  206 CELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMEST  268 (877)
T ss_pred             HHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhh
Confidence            99998 77776533     4889999954 4444555555666677766665433     5689999999753

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.74  E-value=2.8  Score=48.15  Aligned_cols=277  Identities=17%  Similarity=0.168  Sum_probs=158.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCC-hHHHHHHHHHHHHhhcCCchHHH
Q 041643          163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAAS-PDAQTAAANALFNIATDQETVRF  241 (576)
Q Consensus       163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~-~~~q~~AA~AL~nLa~~~~~~~~  241 (576)
                      .+...-.-|.+-++-...-|..++++.-.  .+++....  ..||   +||.+|++ +-+++.||-+|..|=+..+   .
T Consensus       112 vin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~sp---D  181 (938)
T KOG1077|consen  112 VINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSP---D  181 (938)
T ss_pred             HHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCc---c
Confidence            33333335556666666777777877653  34555542  3566   77888754 5688899999998877422   2


Q ss_pred             HHHc-CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhc-----cccc-cCCCcc-hh--h
Q 041643          242 IVDV-LGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC-----MDIA-LDLPKP-ES--A  311 (576)
Q Consensus       242 iv~~-Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~-----~~t~-~~~~~~-i~--~  311 (576)
                      ++.- +-...++++|.+.++.|...+...+-.|+...|+..     .+.+++-|.-|.     .+|. +++-.+ ++  |
T Consensus       182 l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y-----k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW  256 (938)
T KOG1077|consen  182 LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY-----KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW  256 (938)
T ss_pred             ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH-----hhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence            2323 347889999999999988888888888887665543     256677666554     2222 222221 11  2


Q ss_pred             hhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCccc---------
Q 041643          312 KTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLS---------  382 (576)
Q Consensus       312 ~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~---------  382 (576)
                      .. . .+++....                     .|.      -+|+.+|..+- .+-.-+-+.+...+..         
T Consensus       257 L~-v-Kl~rlLq~---------------------~p~------~~D~~~r~~l~-evl~~iLnk~~~~~~~k~vq~~na~  306 (938)
T KOG1077|consen  257 LQ-V-KLLRLLQI---------------------YPT------PEDPSTRARLN-EVLERILNKAQEPPKSKKVQHSNAK  306 (938)
T ss_pred             HH-H-HHHHHHHh---------------------CCC------CCCchHHHHHH-HHHHHHHhccccCccccchHhhhhH
Confidence            11 0 00111100                     000      13444443322 1223333333211111         


Q ss_pred             -------c---hhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhh--CcHHHHH
Q 041643          383 -------L---WSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEK--RMIGPLV  450 (576)
Q Consensus       383 -------I---avae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~--~~I~~LV  450 (576)
                             |   .-.+..++           +....+.+|-.+|.+.+ +.+.+-|+..+..|+......+.  .-...++
T Consensus       307 naVLFeaI~l~~h~D~e~~-----------ll~~~~~~Lg~fls~rE-~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii  374 (938)
T KOG1077|consen  307 NAVLFEAISLAIHLDSEPE-----------LLSRAVNQLGQFLSHRE-TNIRYLALESMCKLASSEFSIDAVKKHQDTII  374 (938)
T ss_pred             HHHHHHHHHHHHHcCCcHH-----------HHHHHHHHHHHHhhccc-ccchhhhHHHHHHHHhccchHHHHHHHHHHHH
Confidence                   0   00111111           12235677778887655 67788888888888765433221  2256788


Q ss_pred             Hhhc-CCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHH
Q 041643          451 ALLS-NRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQV  507 (576)
Q Consensus       451 ~LL~-~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~  507 (576)
                      +.|+ .++..|++.|+--|.-||.-      ++.+.|++     -|.+.|.+.|. ++.
T Consensus       375 ~sLkterDvSirrravDLLY~mcD~------~Nak~IV~-----elLqYL~tAd~sire  422 (938)
T KOG1077|consen  375 NSLKTERDVSIRRRAVDLLYAMCDV------SNAKQIVA-----ELLQYLETADYSIRE  422 (938)
T ss_pred             HHhccccchHHHHHHHHHHHHHhch------hhHHHHHH-----HHHHHHhhcchHHHH
Confidence            8898 88999999999999999753      44677765     46777777765 543

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.35  E-value=0.66  Score=53.39  Aligned_cols=71  Identities=20%  Similarity=0.177  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC
Q 041643          162 AWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQ  236 (576)
Q Consensus       162 ~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~  236 (576)
                      -+...+...++.+++..|..|+....++=.   .+.+...+.|-++.|-.++.+.+ +.+-.+|..||..|...+
T Consensus       121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESH  191 (734)
T ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhC
Confidence            344555778888899999999988887743   35577778888999999999777 899999999999998743

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.25  E-value=0.24  Score=56.82  Aligned_cols=281  Identities=17%  Similarity=0.131  Sum_probs=159.0

Q ss_pred             hcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHH
Q 041643          172 QMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPII  251 (576)
Q Consensus       172 ~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~L  251 (576)
                      ...++..|.-|.++++.+-.  +.....     .+.||.+.|++++ +-.++.|+....++  +..+.+.....|-++.|
T Consensus        96 ~d~np~iR~lAlrtm~~l~v--~~i~ey-----~~~Pl~~~l~d~~-~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L  165 (734)
T KOG1061|consen   96 EDPNPLIRALALRTMGCLRV--DKITEY-----LCDPLLKCLKDDD-PYVRKTAAVCVAKL--FDIDPDLVEDSGLVDAL  165 (734)
T ss_pred             CCCCHHHHHHHhhceeeEee--hHHHHH-----HHHHHHHhccCCC-hhHHHHHHHHHHHh--hcCChhhccccchhHHH
Confidence            34456667777777776533  222222     4689999999999 99999998888777  55677778889999999


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHH----hhccccccCCCcchhhhh-HHHHHHhhhcccc
Q 041643          252 VSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLIS----LLCMDIALDLPKPESAKT-TIHSLVQMKKEMT  326 (576)
Q Consensus       252 V~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~----LL~~~t~~~~~~~i~~~~-si~~~v~~~~~~~  326 (576)
                      -+++.+.++.|..+|..+|..+...++..-    -...+++++.    -|...+  +      |.. .+-.     .   
T Consensus       166 ~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~----~~~l~~~~~~~lL~al~ec~--E------W~qi~IL~-----~---  225 (734)
T KOG1061|consen  166 KDLLSDSNPMVVANALAALSEIHESHPSVN----LLELNPQLINKLLEALNECT--E------WGQIFILD-----C---  225 (734)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHHHhCCCCC----cccccHHHHHHHHHHHHHhh--h------hhHHHHHH-----H---
Confidence            999998888899999999999987665310    1122333333    222111  0      100 0000     0   


Q ss_pred             ccccccCCCCCCCCCCCCCCCCcccccccC-CHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc---h
Q 041643          327 EKSTNVTNNSDGSSRGGHGQHYNKKDRELE-TPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS---P  402 (576)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~-d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s---~  402 (576)
                                              ..++.. |+.   +....+-+..-.|-..|...+  ......+++..+..+.   .
T Consensus       226 ------------------------l~~y~p~d~~---ea~~i~~r~~p~Lqh~n~avv--lsavKv~l~~~~~~~~~~~~  276 (734)
T KOG1061|consen  226 ------------------------LAEYVPKDSR---EAEDICERLTPRLQHANSAVV--LSAVKVILQLVKYLKQVNEL  276 (734)
T ss_pred             ------------------------HHhcCCCCch---hHHHHHHHhhhhhccCCcceE--eehHHHHHHHHHHHHHHHHH
Confidence                                    000000 110   112345555555655554431  1111122332222211   2


Q ss_pred             hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-------------------hh-----------CcHHHHHHh
Q 041643          403 AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-------------------EK-----------RMIGPLVAL  452 (576)
Q Consensus       403 a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-------------------~~-----------~~I~~LV~L  452 (576)
                      ..+.+-++|+.++...  +++|.-+++-+.-+....+..                   .+           .-++.++.=
T Consensus       277 ~~~K~~~pl~tlls~~--~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~E  354 (734)
T KOG1061|consen  277 LFKKVAPPLVTLLSSE--SEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAE  354 (734)
T ss_pred             HHHHhcccceeeeccc--chhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHH
Confidence            3344556677777654  377888887776664422210                   00           012222222


Q ss_pred             h----cCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch
Q 041643          453 L----SNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS  523 (576)
Q Consensus       453 L----~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~  523 (576)
                      |    ..-+.+..++|.+||+++|..-     +.     ..++|+.|.+|++..-. +--.+...++.+..+.|+.
T Consensus       355 l~eYatevD~~fvrkaIraig~~aik~-----e~-----~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~  420 (734)
T KOG1061|consen  355 LKEYATEVDVDFVRKAVRAIGRLAIKA-----EQ-----SNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK  420 (734)
T ss_pred             HHHhhhhhCHHHHHHHHHHhhhhhhhh-----hh-----hhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence            2    3456778889999999998521     21     27899999999997644 3334555566665555654

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.12  E-value=1.4  Score=51.09  Aligned_cols=218  Identities=18%  Similarity=0.187  Sum_probs=140.8

Q ss_pred             CHHHHHHhhcCCC-hhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccc
Q 041643          247 GVPIIVSVLGEAP-VKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEM  325 (576)
Q Consensus       247 avp~LV~lL~s~~-~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~  325 (576)
                      -|+.|++-+.+.+ .+=+..|+.+|-.++.   ++|..++..| ++||++.|..+-                        
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~------------------------   74 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDY------------------------   74 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhcc------------------------
Confidence            4677787776554 5567889999998884   7899998877 599999996541                        


Q ss_pred             cccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCccc------chhcccchHHHHhhhcc
Q 041643          326 TEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLS------LWSAESNAELRRSAFKT  399 (576)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~------Iavae~~~~lrr~a~k~  399 (576)
                                                    .||+..    ..+...|..+....+.-      -.+.+.|..+-. .|..
T Consensus        75 ------------------------------~D~E~i----k~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae-~fik  119 (970)
T KOG0946|consen   75 ------------------------------MDPEII----KYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAE-QFIK  119 (970)
T ss_pred             ------------------------------CCHHHH----HHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHH-HHHc
Confidence                                          233211    12333333332211100      000000111111 1222


Q ss_pred             CchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-------hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          400 NSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-------EKRMIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       400 ~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-------~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                      +    ++.|..|+.+++.-| --+..+++.-|.++-++-+-.       -.-+|..|+.+|+..-+.|+-+|..-|+.+.
T Consensus       120 ~----qd~I~lll~~~e~~D-F~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~  194 (970)
T KOG0946|consen  120 N----QDNITLLLQSLEEFD-FHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELV  194 (970)
T ss_pred             C----chhHHHHHHHHHhhc-hhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHH
Confidence            1    356778888887644 778888988888886543311       1136899999998888889999999999886


Q ss_pred             CCCCCCCHHHHHHHHHCCCcHhHHHhhccC---hh--HHHHHHHHHHHHhc-ccCchHHHHhccchhhHh
Q 041643          473 SPDNFNRSEHSKAIIEFDGVPPLMRLLKIS---DR--AQVHGLVFLCYLAL-SAGNSKALEQARALNALE  536 (576)
Q Consensus       473 ~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~---d~--vq~~A~~~L~~lal-~~~~~~~l~~~~~l~~Le  536 (576)
                      -+ |   +..++.++=+++...|..+++..   |.  |-..++.+|-++.. |..|+.-+-+.+.++.|-
T Consensus       195 k~-n---~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~  260 (970)
T KOG0946|consen  195 KD-N---SSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLL  260 (970)
T ss_pred             cc-C---chHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHH
Confidence            43 3   35566666678999999999742   44  45569999988864 556677777888888886

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=95.09  E-value=0.39  Score=53.59  Aligned_cols=349  Identities=13%  Similarity=0.105  Sum_probs=173.3

Q ss_pred             cHHHHHHHHHhhhcch---HHHhhhcccCccccCCCCCCCcchHhHHHHHHHH-HHhcCCHHHHHHHHHHHHHHhhcCcc
Q 041643          120 DFKKVFSLLESSIGDM---RWLLTIFDSDEVNLSLPPIASNDPILAWVWSFIS-TIQMGQIKSRVDAANELASLARDNNR  195 (576)
Q Consensus       120 ~l~~l~~~L~~~~~~~---~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~-~L~~G~~e~k~~AA~~L~~La~~~~~  195 (576)
                      -+|.|+++|+....|.   .|-.+.+...  -.-+-.-...|-|.-.||.+|. -+++.+-..++.|+.++++....  +
T Consensus       322 vlP~lL~LL~~q~ed~~~DdWn~smaA~s--CLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g--p  397 (858)
T COG5215         322 VLPELLSLLEKQGEDYYGDDWNPSMAASS--CLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG--P  397 (858)
T ss_pred             HHHHHHHHHHhcCCCccccccchhhhHHH--HHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC--c
Confidence            4677777777644332   3433322110  0000001123445556788776 78888888999999999999865  3


Q ss_pred             cHHHH--HhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcC---CChhHHHHHHHHH
Q 041643          196 NRKII--VEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGE---APVKVQVAVANLV  270 (576)
Q Consensus       196 ~~~~I--~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s---~~~~vq~~Aa~aL  270 (576)
                      +..+.  +-..++|-+..++.+.. --++..+|||++.|+.+  ....|-..|-+++.|.-+.-   ..+.+-.+..|+.
T Consensus       398 ~~~~lT~~V~qalp~i~n~m~D~~-l~vk~ttAwc~g~iad~--va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~  474 (858)
T COG5215         398 CEDCLTKIVPQALPGIENEMSDSC-LWVKSTTAWCFGAIADH--VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRK  474 (858)
T ss_pred             cHHHHHhhHHhhhHHHHHhcccce-eehhhHHHHHHHHHHHH--HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHH
Confidence            43332  22457788888776444 77899999999999863  12223345656665554432   2456778889999


Q ss_pred             HHHhcCChHHHHH---HHhcCCchhHHHhhccccccCCCcchhhhhHHHH----HHhhhcc--ccccccccCCCCCCCCC
Q 041643          271 ARMAELDSIAQEE---FVRENVTRSLISLLCMDIALDLPKPESAKTTIHS----LVQMKKE--MTEKSTNVTNNSDGSSR  341 (576)
Q Consensus       271 ~~LA~~~~~~r~~---i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~----~v~~~~~--~~~~~~~~~~~~~~~~~  341 (576)
                      -|++.+-++.-..   +.. ..-+.++.-|-.+|.+..... ....|..+    ++....-  .....+.-......+..
T Consensus       475 ~nlv~h~a~a~~~~~S~l~-~fY~ai~~~Lv~~t~~~~Ne~-n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~  552 (858)
T COG5215         475 ENLVDHIAKAVREVESFLA-KFYLAILNALVKGTELALNES-NLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDE  552 (858)
T ss_pred             HhHHHhhhhhhccccchhH-HHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence            9988654433211   110 111222322212221000000 00111111    1100000  00000000000000000


Q ss_pred             CCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCCh
Q 041643          342 GGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDA  421 (576)
Q Consensus       342 ~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~  421 (576)
                         .++........+|.....+++.+-...|-.+-+-.         .++++        +...-+++.+++++++.+..
T Consensus       553 ---~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~---------~~~ie--------~v~D~lm~Lf~r~les~~~t  612 (858)
T COG5215         553 ---CISVLGQILATEDQLLVEELQSNYIGVLEAIIRTR---------RRDIE--------DVEDQLMELFIRILESTKPT  612 (858)
T ss_pred             ---HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---------CCCcc--------cHHHHHHHHHHHHHhccCCc
Confidence               00000000123343333334444444443332110         00111        12334678888899877545


Q ss_pred             hhHHHHHHHHHHHhcCCch----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHH
Q 041643          422 MLQTPAIRSIGCLAKTFPA----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMR  497 (576)
Q Consensus       422 ~lq~~a~~aLgnLa~~~~~----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~  497 (576)
                      .+..-...+|++|++....    --..+||-|.+-|+..+-.|...|..-++.++-.   +..+..  +....-...|+|
T Consensus       613 ~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlant---l~~df~--~y~d~~ms~LvQ  687 (858)
T COG5215         613 TAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANT---LGTDFN--IYADVLMSSLVQ  687 (858)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHH---hhhhHH--HHHHHHHHHHHH
Confidence            5666677889999864332    1236899999999888888888898888888732   212221  222234456777


Q ss_pred             hhccC
Q 041643          498 LLKIS  502 (576)
Q Consensus       498 LL~~~  502 (576)
                      .|.++
T Consensus       688 ~lss~  692 (858)
T COG5215         688 CLSSE  692 (858)
T ss_pred             HhcCh
Confidence            77654

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.07  E-value=0.12  Score=58.34  Aligned_cols=68  Identities=16%  Similarity=0.157  Sum_probs=52.4

Q ss_pred             CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHH--HH---cCCHHHHHHhhcCCChhHHHHHHHHHHH
Q 041643          204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFI--VD---VLGVPIIVSVLGEAPVKVQVAVANLVAR  272 (576)
Q Consensus       204 GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~i--v~---~Gavp~LV~lL~s~~~~vq~~Aa~aL~~  272 (576)
                      .++|.|..+|.+.+ ...++.|-.||..+..++...-.-  -.   .--+|.|.++.+++++..+..|..++-.
T Consensus       128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq  200 (885)
T KOG2023|consen  128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQ  200 (885)
T ss_pred             hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhh
Confidence            46899999999988 889999999999999876432100  00   1258999999999999999888776543

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=94.75  E-value=0.17  Score=57.77  Aligned_cols=70  Identities=23%  Similarity=0.351  Sum_probs=56.9

Q ss_pred             hhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch----hhh-CcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA----KEK-RMIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       402 ~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~----~~~-~~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                      |.++++++.|..+|++.. +++|.+|+.-+|.+|...+.    ++. ++==.|+++|.+.+.++++.|..+++.++
T Consensus       879 pPi~dllPrltPILknrh-eKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia  953 (1172)
T KOG0213|consen  879 PPIKDLLPRLTPILKNRH-EKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA  953 (1172)
T ss_pred             CChhhhcccchHhhhhhH-HHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            567889999999998866 89999999999999976654    121 23345899999999999999999988775

>PF05536 Neurochondrin: Neurochondrin

Probab=94.67  E-value=0.18  Score=57.21  Aligned_cols=96  Identities=19%  Similarity=0.216  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHhhcCcccH--HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHh
Q 041643          177 KSRVDAANELASLARDNNRNR--KIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSV  254 (576)
Q Consensus       177 e~k~~AA~~L~~La~~~~~~~--~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~l  254 (576)
                      +.+.-|...|..++.+ ++..  ..+  .+-||.|++++.+++.......|..+|..++.+++.++.+++.|+|+.|++.
T Consensus        72 ~~~~LavsvL~~f~~~-~~~a~~~~~--~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei  148 (543)
T PF05536_consen   72 EYLSLAVSVLAAFCRD-PELASSPQM--VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEI  148 (543)
T ss_pred             HHHHHHHHHHHHHcCC-hhhhcCHHH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHH
Confidence            4455666667777764 3332  233  2479999999998882389999999999999999999999999999999999


Q ss_pred             hcCCChhHHHHHHHHHHHHhcC
Q 041643          255 LGEAPVKVQVAVANLVARMAEL  276 (576)
Q Consensus       255 L~s~~~~vq~~Aa~aL~~LA~~  276 (576)
                      +.++ +...+.|...+.++...
T Consensus       149 ~~~~-~~~~E~Al~lL~~Lls~  169 (543)
T PF05536_consen  149 IPNQ-SFQMEIALNLLLNLLSR  169 (543)
T ss_pred             HHhC-cchHHHHHHHHHHHHHh
Confidence            9884 45678888888887754

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=94.56  E-value=0.17  Score=55.07  Aligned_cols=161  Identities=15%  Similarity=0.168  Sum_probs=107.6

Q ss_pred             cccCCHHHHHHHHHHHHHHHHHhhcC-CcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHH
Q 041643          353 RELETPEVKAKVRIACAEALWKLSKG-CLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSI  431 (576)
Q Consensus       353 ~e~~d~~vk~~~k~~Aa~ALw~La~g-~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aL  431 (576)
                      +....|++-.+++..|++.|-.+... |.+.|         -|           .....++.+-....-++++......|
T Consensus       187 rmf~aPn~et~vRve~~rlLEq~~~aeN~d~v---------a~-----------~~~~~Il~lAK~~e~~e~aR~~~~il  246 (832)
T KOG3678|consen  187 RMFQAPNLETSVRVEAARLLEQILVAENRDRV---------AR-----------IGLGVILNLAKEREPVELARSVAGIL  246 (832)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHhhhhhhHH---------hh-----------ccchhhhhhhhhcCcHHHHHHHHHHH
Confidence            33444554456677888888766432 22211         11           11122222222223367788888888


Q ss_pred             HHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-H
Q 041643          432 GCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-A  505 (576)
Q Consensus       432 gnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-v  505 (576)
                      +++-+...+     .++++|..++.-.+-.++.+.+-+|.||+|++-.+   +.+-++.|++.....-|.-|-.+.|+ .
T Consensus       247 ~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~---~~a~qrrmveKr~~EWLF~LA~skDel~  323 (832)
T KOG3678|consen  247 EHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHG---GQAVQRRMVEKRAAEWLFPLAFSKDELL  323 (832)
T ss_pred             HHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhc---hhHHHHHHHHhhhhhhhhhhhcchHHHH
Confidence            998766554     25577877777777888999999999999999544   35788999999988888888777777 7


Q ss_pred             HHHHHHHHHHHhcccCchHHHHhccchhhHh
Q 041643          506 QVHGLVFLCYLALSAGNSKALEQARALNALE  536 (576)
Q Consensus       506 q~~A~~~L~~lal~~~~~~~l~~~~~l~~Le  536 (576)
                      ..+|+.+.|.++.|..-..+..+.|-+...|
T Consensus       324 R~~AClAV~vlat~KE~E~~VrkS~TlaLVE  354 (832)
T KOG3678|consen  324 RLHACLAVAVLATNKEVEREVRKSGTLALVE  354 (832)
T ss_pred             HHHHHHHHhhhhhhhhhhHHHhhccchhhhh
Confidence            8889999999976554445555677665444

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=94.19  E-value=0.23  Score=55.70  Aligned_cols=71  Identities=18%  Similarity=0.286  Sum_probs=56.5

Q ss_pred             chhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch----hhh-CcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          401 SPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA----KEK-RMIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       401 s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~----~~~-~~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                      -|.+.++++.|..+|++.. .+++.+.+.-+|-++...+.    ++. ++-=.||+.|.+.+.+++++|..+++.++
T Consensus       683 qpPi~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is  758 (975)
T COG5181         683 QPPISGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS  758 (975)
T ss_pred             CCchhhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence            3567789999999998765 78999999999999987664    111 23345999999999999999999888664

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=94.07  E-value=2.2  Score=50.32  Aligned_cols=261  Identities=14%  Similarity=0.148  Sum_probs=136.6

Q ss_pred             CCHHHHHHHHHHHHHHhhcCcccH-HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC-ch-HHHHHHcCCHHH
Q 041643          174 GQIKSRVDAANELASLARDNNRNR-KIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQ-ET-VRFIVDVLGVPI  250 (576)
Q Consensus       174 G~~e~k~~AA~~L~~La~~~~~~~-~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~-~~-~~~iv~~Gavp~  250 (576)
                      |+.-.|.-|+.++..++...-..- ..+. ..++|.|..+|+... ...+.....++-.|..+- ++ ...++++ ++.-
T Consensus       621 ~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l-~~il~~l~~flrK~~-r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~e  697 (1233)
T KOG1824|consen  621 GNEITRLTAVKALTLIAMSPLDIDLSPVL-TEILPELASFLRKNQ-RALRLATLTALDKLVKNYSDSIPAELLEA-VLVE  697 (1233)
T ss_pred             hchhHHHHHHHHHHHHHhccceeehhhhH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHH
Confidence            455667777777777665422211 2222 235888888888766 566666666666665531 11 1122221 1222


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccccccc
Q 041643          251 IVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKST  330 (576)
Q Consensus       251 LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~  330 (576)
                      +-.|+++.+..+-++|...|..++...|.+- .-...-.++.++.|+++.++|...-... ......+|......-...+
T Consensus       698 l~~Lisesdlhvt~~a~~~L~tl~~~~ps~l-~~~~~~iL~~ii~ll~Spllqg~al~~~-l~~f~alV~t~~~~l~y~~  775 (1233)
T KOG1824|consen  698 LPPLISESDLHVTQLAVAFLTTLAIIQPSSL-LKISNPILDEIIRLLRSPLLQGGALSAL-LLFFQALVITKEPDLDYIS  775 (1233)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhcccHHH-HHHhhhhHHHHHHHhhCccccchHHHHH-HHHHHHHHhcCCCCccHHH
Confidence            3333455667778888888998887766553 3344567899999999987543211000 0112222222221100000


Q ss_pred             c-cCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHH
Q 041643          331 N-VTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLD  409 (576)
Q Consensus       331 ~-~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~  409 (576)
                      . .....|......+|++.              +.--.-|.+...|+.....                     ..+.++.
T Consensus       776 l~s~lt~PV~~~~~~~l~k--------------qa~~siA~cvA~Lt~~~~~---------------------~s~s~a~  820 (1233)
T KOG1824|consen  776 LLSLLTAPVYEQVTDGLHK--------------QAYYSIAKCVAALTCACPQ---------------------KSKSLAT  820 (1233)
T ss_pred             HHHHHcCCcccccccchhH--------------HHHHHHHHHHHHHHHhccc---------------------cchhHHH
Confidence            0 00011222222223332              0000112222222211100                     0123444


Q ss_pred             HHHHHh-hhcCChhhHHHHHHHHHHHhcCCchhhhCcH-HHHHHhhcCCCHHHHHHHHHHHHhhcCC
Q 041643          410 QLLRLI-HEESDAMLQTPAIRSIGCLAKTFPAKEKRMI-GPLVALLSNRNVDVATEAVIALSKFVSP  474 (576)
Q Consensus       410 ~Ll~lL-~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I-~~LV~LL~~~~~~V~~eAa~AL~nla~~  474 (576)
                      .|+.-+ +.+.++.++.-|+-.+|.+-+.........+ ..+++.+++.+++|+..|+.||++++.+
T Consensus       821 kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vg  887 (1233)
T KOG1824|consen  821 KLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVG  887 (1233)
T ss_pred             HHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcC
Confidence            555433 3444567888999999999876554333333 4567889999999999999999999874

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=93.95  E-value=3.9  Score=46.23  Aligned_cols=306  Identities=16%  Similarity=0.131  Sum_probs=162.9

Q ss_pred             CHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 041643          205 GILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEF  284 (576)
Q Consensus       205 gIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i  284 (576)
                      .|..|+.-|...+ +..|+.-+.+|.-+....+...-   .-..+.+.+++.+++..-+..+++.++.+..+.  .-..+
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~---~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~  170 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG---EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESL  170 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH---HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhh
Confidence            4677888888888 99999988998877764433221   114567888888888778888999999988653  33456


Q ss_pred             HhcCCchhHHHhhccccccCCCcchhhh-hHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHH
Q 041643          285 VRENVTRSLISLLCMDIALDLPKPESAK-TTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAK  363 (576)
Q Consensus       285 ~~~g~I~~LV~LL~~~t~~~~~~~i~~~-~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~  363 (576)
                      .+.+.+..|-..+....    +.  ... .+.-......      .+.|.+.-|.+...   +|.+...-...+++||..
T Consensus       171 ~~~~~l~~l~~ai~dk~----~~--~~re~~~~a~~~~~------~~Lg~~~EPyiv~~---lp~il~~~~d~~~~Vr~A  235 (569)
T KOG1242|consen  171 KEFGFLDNLSKAIIDKK----SA--LNREAALLAFEAAQ------GNLGPPFEPYIVPI---LPSILTNFGDKINKVREA  235 (569)
T ss_pred             hhhhHHHHHHHHhcccc----hh--hcHHHHHHHHHHHH------HhcCCCCCchHHhh---HHHHHHHhhccchhhhHH
Confidence            66677777777665331    10  000 0000000000      11222211111110   010000011123444311


Q ss_pred             HHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch---
Q 041643          364 VRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA---  440 (576)
Q Consensus       364 ~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~---  440 (576)
                       ...|+.|+.+.-..                       -+.+.+++.++.-+.... =.-...++..+|+++..-+.   
T Consensus       236 -a~~a~kai~~~~~~-----------------------~aVK~llpsll~~l~~~k-WrtK~aslellg~m~~~ap~qLs  290 (569)
T KOG1242|consen  236 -AVEAAKAIMRCLSA-----------------------YAVKLLLPSLLGSLLEAK-WRTKMASLELLGAMADCAPKQLS  290 (569)
T ss_pred             -HHHHHHHHHHhcCc-----------------------chhhHhhhhhHHHHHHHh-hhhHHHHHHHHHHHHHhchHHHH
Confidence             12344444332111                       123445666554333210 12234566667777643332   


Q ss_pred             -hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCC-CCCCCHHHHHHH---H--------------------------HC
Q 041643          441 -KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSP-DNFNRSEHSKAI---I--------------------------EF  489 (576)
Q Consensus       441 -~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~-~n~~~~~~~~~I---v--------------------------~~  489 (576)
                       .-..+||.|.+.|-++.++|++.+-.+|.++.+- +|   ++.++.+   +                          ++
T Consensus       291 ~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~  367 (569)
T KOG1242|consen  291 LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDA  367 (569)
T ss_pred             HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecc
Confidence             1236789999999888999999888888888632 22   2322211   1                          12


Q ss_pred             CCcHhHHHhhccC----hh-HHHHHHHHHHHHhcccCchHHHHhccchhhHh-hhhcccCCCCCcHHHHHHHHH-HHHH
Q 041643          490 DGVPPLMRLLKIS----DR-AQVHGLVFLCYLALSAGNSKALEQARALNALE-GAARTVLPQHPELRDLFAQAI-YHLT  561 (576)
Q Consensus       490 ggi~~Lv~LL~~~----d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le-~~~~~~~~q~~~~~~l~~~a~-~~l~  561 (576)
                      -.+..++-+|+.+    +. +.+.++....|++.-++|...+  +.+++.|- +++.....=.|+.+++..+|+ .+++
T Consensus       368 psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~l--apfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e  444 (569)
T KOG1242|consen  368 PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDL--APFLPSLLPGLKENLDDAVPEVRAVAARALGALLE  444 (569)
T ss_pred             hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHH--hhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence            2334455555433    12 4455666666666556565554  34555554 666554444689999999999 4443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.93  E-value=3  Score=49.82  Aligned_cols=206  Identities=22%  Similarity=0.215  Sum_probs=140.5

Q ss_pred             hcCCHHHHHHHHccCCChHHHHHHHHHHH-HhhcCCchHHHHHHcCCHHHHHHhhcC-C--ChhHHHHHHHHHHHHhcCC
Q 041643          202 EEGGILPLLKLLKEAASPDAQTAAANALF-NIATDQETVRFIVDVLGVPIIVSVLGE-A--PVKVQVAVANLVARMAELD  277 (576)
Q Consensus       202 ~~GgIppLV~LL~~g~~~~~q~~AA~AL~-nLa~~~~~~~~iv~~Gavp~LV~lL~s-~--~~~vq~~Aa~aL~~LA~~~  277 (576)
                      .-|-.|-.++||++.. .+.+--=+..=. -||-++.-...+++.++-..|+.+|.. +  +.+.+..||..|+.+..+.
T Consensus       510 sVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf  588 (1387)
T KOG1517|consen  510 SVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF  588 (1387)
T ss_pred             ccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence            4588999999999998 787754333333 456677777789999999999999976 3  3588999999999999888


Q ss_pred             hHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCC
Q 041643          278 SIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELET  357 (576)
Q Consensus       278 ~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d  357 (576)
                      +-.|+...+.+.|..=.++|..+                                                         
T Consensus       589 ~lGQ~acl~~~li~iCle~lnd~---------------------------------------------------------  611 (1387)
T KOG1517|consen  589 KLGQKACLNGNLIGICLEHLNDD---------------------------------------------------------  611 (1387)
T ss_pred             chhHHHhccccHHHHHHHHhcCC---------------------------------------------------------
Confidence            88887777766555444444321                                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcC
Q 041643          358 PEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKT  437 (576)
Q Consensus       358 ~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~  437 (576)
                      ++-  -++..++-+|..|=.+..+          -|-++..      ....+.|..+|.++ .+++...|+-|||-+-+.
T Consensus       612 ~~p--LLrQW~~icLG~LW~d~~~----------Arw~G~r------~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~~  672 (1387)
T KOG1517|consen  612 PEP--LLRQWLCICLGRLWEDYDE----------ARWSGRR------DNAHEKLILLLSDP-VPEVRAAAVFALGTFLSN  672 (1387)
T ss_pred             ccH--HHHHHHHHHHHHHhhhcch----------hhhcccc------ccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhcc
Confidence            100  1345666666666433221          1221111      13467788888764 489999999999999876


Q ss_pred             C----chh-------------hh---CcHH----HHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 041643          438 F----PAK-------------EK---RMIG----PLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIE  488 (576)
Q Consensus       438 ~----~~~-------------~~---~~I~----~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~  488 (576)
                      +    .+.             ++   ..|+    +|+.+++.+.+-|++|.+.+|+.+..+    +..|...+.-
T Consensus       673 ~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g----~~~~~~~va~  743 (1387)
T KOG1517|consen  673 GSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG----YVSHLKVVAG  743 (1387)
T ss_pred             cccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh----hHHHhHHHhh
Confidence            3    210             01   1233    788888999999999999999999864    2455555554

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.78  E-value=7  Score=45.56  Aligned_cols=249  Identities=16%  Similarity=0.165  Sum_probs=133.4

Q ss_pred             CCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHH
Q 041643          216 AASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLI  294 (576)
Q Consensus       216 g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV  294 (576)
                      +.++-++..||.||..|=+ +++.+..++     ..+=.||.+.++.|...|+.|--.++   |+.-+.|-+  --+.|.
T Consensus       154 D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evC---PerldLIHk--nyrklC  223 (968)
T KOG1060|consen  154 DPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVC---PERLDLIHK--NYRKLC  223 (968)
T ss_pred             CCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhc---hhHHHHhhH--HHHHHH
Confidence            3338999999999999977 677777554     35566778877877777766655554   444444433  236666


Q ss_pred             HhhccccccCCCc-chhhhhHHHHHHhhhcc--ccccc------cccCCCCCCCCCCCCCCCCcccccccCCHHHHHHH-
Q 041643          295 SLLCMDIALDLPK-PESAKTTIHSLVQMKKE--MTEKS------TNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKV-  364 (576)
Q Consensus       295 ~LL~~~t~~~~~~-~i~~~~si~~~v~~~~~--~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~-  364 (576)
                      ++|-.=    +.+ +++   -|+.+++....  +....      .+|.  ........+++.    .-...||.++.-+ 
T Consensus       224 ~ll~dv----deWgQvv---lI~mL~RYAR~~l~~P~~~~~~~e~n~~--~~~~~~~~~~~~----~P~~~d~D~~lLL~  290 (968)
T KOG1060|consen  224 RLLPDV----DEWGQVV---LINMLTRYARHQLPDPTVVDSSLEDNGR--SCNLKDKYNEIR----TPYVNDPDLKLLLQ  290 (968)
T ss_pred             hhccch----hhhhHHH---HHHHHHHHHHhcCCCccccccccccCcc--cccccccccccC----CCcccCccHHHHHH
Confidence            666310    111 111   12222222111  00000      0000  000000000000    0123355554221 


Q ss_pred             -------------HHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHH
Q 041643          365 -------------RIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSI  431 (576)
Q Consensus       365 -------------k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aL  431 (576)
                                   -.++|.+.|.||-.+                       ....+++.|+++|+++  ..+|+-.++.|
T Consensus       291 stkpLl~S~n~sVVmA~aql~y~lAP~~-----------------------~~~~i~kaLvrLLrs~--~~vqyvvL~nI  345 (968)
T KOG1060|consen  291 STKPLLQSRNPSVVMAVAQLFYHLAPKN-----------------------QVTKIAKALVRLLRSN--REVQYVVLQNI  345 (968)
T ss_pred             hccHHHhcCCcHHHHHHHhHHHhhCCHH-----------------------HHHHHHHHHHHHHhcC--CcchhhhHHHH
Confidence                         135666666665322                       1235688899999875  47788777777


Q ss_pred             HHHhcCCch----------------h--------------hhC----cHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCC
Q 041643          432 GCLAKTFPA----------------K--------------EKR----MIGPLVALLSNRNVDVATEAVIALSKFVSPDNF  477 (576)
Q Consensus       432 gnLa~~~~~----------------~--------------~~~----~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~  477 (576)
                      ..++..-+.                .              .+.    +++.|-.-.++.+.++...|..||+.||+.-  
T Consensus       346 a~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~--  423 (968)
T KOG1060|consen  346 ATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRI--  423 (968)
T ss_pred             HHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhh--
Confidence            777652110                0              011    1233333335556678888999999998532  


Q ss_pred             CCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccC
Q 041643          478 NRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAG  521 (576)
Q Consensus       478 ~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~  521 (576)
                             .=+..-|+.-|++||++.|. |-..++..+-.+..+.+
T Consensus       424 -------~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p  461 (968)
T KOG1060|consen  424 -------GSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP  461 (968)
T ss_pred             -------CchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence                   12334588889999998877 66667776766654333

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.49  E-value=2.4  Score=48.71  Aligned_cols=275  Identities=16%  Similarity=0.162  Sum_probs=148.3

Q ss_pred             HHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 041643          207 LPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFV  285 (576)
Q Consensus       207 ppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~  285 (576)
                      +-++.||.+.. +-.++.|...|+.+-. .||.-+     -.+|.|++=|.++++.||..|+.+++.||..+|.+--.  
T Consensus       147 ~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~--  218 (877)
T KOG1059|consen  147 DDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ--  218 (877)
T ss_pred             HHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc--
Confidence            55778888888 8999999999999876 555433     37899999999999999999999999999988765322  


Q ss_pred             hcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCc-ccccccCCHHHHHHH
Q 041643          286 RENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYN-KKDRELETPEVKAKV  364 (576)
Q Consensus       286 ~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~e~~d~~vk~~~  364 (576)
                         .-|.+-.+|-..+   ..+     +=|.- +.....+       .|.-          |.+ +|..+   |-+ .-+
T Consensus       219 ---LAP~ffkllttSs---NNW-----mLIKi-iKLF~aL-------tplE----------PRLgKKLie---plt-~li  265 (877)
T KOG1059|consen  219 ---LAPLFYKLLVTSS---NNW-----VLIKL-LKLFAAL-------TPLE----------PRLGKKLIE---PIT-ELM  265 (877)
T ss_pred             ---ccHHHHHHHhccC---CCe-----ehHHH-HHHHhhc-------cccC----------chhhhhhhh---HHH-HHH
Confidence               2366667774321   111     00100 0000000       0000          000 01111   100 011


Q ss_pred             H-HHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHH-HHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhh
Q 041643          365 R-IACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVL-DQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE  442 (576)
Q Consensus       365 k-~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV-~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~  442 (576)
                      . ..|..-|+- |-+..  |++  +.    -++ .++.-+.-.+. ..|=-++.+.| +.+.+-++-+++-++.+.+..-
T Consensus       266 ~sT~AmSLlYE-CvNTV--Va~--s~----s~g-~~d~~asiqLCvqKLr~fiedsD-qNLKYlgLlam~KI~ktHp~~V  334 (877)
T KOG1059|consen  266 ESTVAMSLLYE-CVNTV--VAV--SM----SSG-MSDHSASIQLCVQKLRIFIEDSD-QNLKYLGLLAMSKILKTHPKAV  334 (877)
T ss_pred             HhhHHHHHHHH-HHHHh--eee--hh----ccC-CCCcHHHHHHHHHHHhhhhhcCC-ccHHHHHHHHHHHHhhhCHHHH
Confidence            1 223333332 22210  111  10    001 11222222222 23434666554 8899999999999988766432


Q ss_pred             hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh--HHHH-HHHHHHHHhcc
Q 041643          443 KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR--AQVH-GLVFLCYLALS  519 (576)
Q Consensus       443 ~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~--vq~~-A~~~L~~lal~  519 (576)
                      ..--.-++++|+..++.|+-.|---|..+.+.      ++...|+     +.|+.-+...+.  .... ....+..|+. 
T Consensus       335 qa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk------kNl~eIV-----k~LM~~~~~ae~t~yrdell~~II~iCS~-  402 (877)
T KOG1059|consen  335 QAHKDLILRCLDDKDESIRLRALDLLYGMVSK------KNLMEIV-----KTLMKHVEKAEGTNYRDELLTRIISICSQ-  402 (877)
T ss_pred             HHhHHHHHHHhccCCchhHHHHHHHHHHHhhh------hhHHHHH-----HHHHHHHHhccchhHHHHHHHHHHHHhhh-
Confidence            22335578899999999999999998888753      4455664     344443332332  3333 4444444442 


Q ss_pred             cCchHHHHhcc-chhhHhhhhcccCCCC
Q 041643          520 AGNSKALEQAR-ALNALEGAARTVLPQH  546 (576)
Q Consensus       520 ~~~~~~l~~~~-~l~~Le~~~~~~~~q~  546 (576)
                       .|-.-+...+ ++.+|..+-+.+..+|
T Consensus       403 -snY~~ItdFEWYlsVlveLa~l~~~~~  429 (877)
T KOG1059|consen  403 -SNYQYITDFEWYLSVLVELARLEGTRH  429 (877)
T ss_pred             -hhhhhhhhHHHHHHHHHHHHhccccch
Confidence             2223344433 3455544444444443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=93.47  E-value=3.3  Score=47.87  Aligned_cols=260  Identities=20%  Similarity=0.187  Sum_probs=150.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccH---HHHHhcCCHHHHHHHHccCCChHHHH---HHHHHHHHhhcC
Q 041643          162 AWVWSFISTIQMGQIKSRVDAANELASLARDNNRNR---KIIVEEGGILPLLKLLKEAASPDAQT---AAANALFNIATD  235 (576)
Q Consensus       162 ~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~---~~I~~~GgIppLV~LL~~g~~~~~q~---~AA~AL~nLa~~  235 (576)
                      +++....-+|++.+...|++||..+.+|+.. -.++   +.+...|.|  |.+.|.+.. +++--   .|..|+.|.-.-
T Consensus       799 qi~stiL~rLnnksa~vRqqaadlis~la~V-lktc~ee~~m~~lGvv--LyEylgeey-pEvLgsILgAikaI~nvigm  874 (1172)
T KOG0213|consen  799 QICSTILWRLNNKSAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGVV--LYEYLGEEY-PEVLGSILGAIKAIVNVIGM  874 (1172)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhHH--HHHhcCccc-HHHHHHHHHHHHHHHHhccc
Confidence            3556667799999999999999999999864 2222   344555554  777787766 77653   555666555421


Q ss_pred             CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHH---HHHHHhcCCchhHHHhhccccccCCCcchhhh
Q 041643          236 QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIA---QEEFVRENVTRSLISLLCMDIALDLPKPESAK  312 (576)
Q Consensus       236 ~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~---r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~  312 (576)
                      ..-..-|  .|.+|.|.-+|++.++.+|++....++.+|..++++   |+-++-   ---|+++|.+-           +
T Consensus       875 ~km~pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRI---cfeLlelLkah-----------k  938 (1172)
T KOG0213|consen  875 TKMTPPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRI---CFELLELLKAH-----------K  938 (1172)
T ss_pred             cccCCCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHHHH-----------H
Confidence            1111111  358999999999999999999999999999877663   322221   12355555321           0


Q ss_pred             hHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHH
Q 041643          313 TTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAEL  392 (576)
Q Consensus       313 ~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~l  392 (576)
                                                                       -+++.+|...+.++|.--         |   
T Consensus       939 -------------------------------------------------K~iRRaa~nTfG~IakaI---------G---  957 (1172)
T KOG0213|consen  939 -------------------------------------------------KEIRRAAVNTFGYIAKAI---------G---  957 (1172)
T ss_pred             -------------------------------------------------HHHHHHHHhhhhHHHHhc---------C---
Confidence                                                             024456667776665310         1   


Q ss_pred             HHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHH-HHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhh
Q 041643          393 RRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPA-IRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKF  471 (576)
Q Consensus       393 rr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a-~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nl  471 (576)
                                 -..++..|+.-|+..+  ..+.-| .-+|+-.+.+..  --.++|.|.+=-+..+..||.-.-.+++-|
T Consensus       958 -----------PqdVLatLlnnLkvqe--Rq~RvcTtvaIaIVaE~c~--pFtVLPalmneYrtPe~nVQnGVLkalsf~ 1022 (1172)
T KOG0213|consen  958 -----------PQDVLATLLNNLKVQE--RQNRVCTTVAIAIVAETCG--PFTVLPALMNEYRTPEANVQNGVLKALSFM 1022 (1172)
T ss_pred             -----------HHHHHHHHHhcchHHH--HHhchhhhhhhhhhhhhcC--chhhhHHHHhhccCchhHHHHhHHHHHHHH
Confidence                       1234555554343321  222111 112332221100  012567777666777888888888888866


Q ss_pred             cCCCCCCCHHHHHHHHHCCCcHhHHHhhccChhHHH-HHHHHHHHHhcccCc
Q 041643          472 VSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQV-HGLVFLCYLALSAGN  522 (576)
Q Consensus       472 a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~vq~-~A~~~L~~lal~~~~  522 (576)
                      -.   |.+.-..++|..  ..|.|-+-|-..|.+-. .|..++-.++++++-
T Consensus      1023 Fe---yigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g 1069 (1172)
T KOG0213|consen 1023 FE---YIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG 1069 (1172)
T ss_pred             HH---HHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC
Confidence            31   222233444432  45555566655565433 466677777776544

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.30  E-value=1.9  Score=50.01  Aligned_cols=66  Identities=24%  Similarity=0.388  Sum_probs=47.5

Q ss_pred             HHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcC
Q 041643          407 VLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVS  473 (576)
Q Consensus       407 vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~  473 (576)
                      ++.-|..++.++| -.+-..++.+||.||..........+..||.||++.+..|..+|+..|..+..
T Consensus       393 ILrE~q~YI~s~d-~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq  458 (968)
T KOG1060|consen  393 ILRELQTYIKSSD-RSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQ  458 (968)
T ss_pred             HHHHHHHHHhcCc-hhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence            4555666777666 35777788888888865544445567778888888888888888888887764

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=93.24  E-value=0.42  Score=55.62  Aligned_cols=100  Identities=19%  Similarity=0.262  Sum_probs=78.9

Q ss_pred             HHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 041643          407 VLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAI  486 (576)
Q Consensus       407 vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~I  486 (576)
                      .+..+.+=+++. ++.++..|+|+++.+=  ..+.-..+++|+.++|.++++.|+++|+.||.++=.-+       .+..
T Consensus        93 avNti~kDl~d~-N~~iR~~AlR~ls~l~--~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-------~~l~  162 (757)
T COG5096          93 AVNTIQKDLQDP-NEEIRGFALRTLSLLR--VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-------KDLY  162 (757)
T ss_pred             HHHHHHhhccCC-CHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-------Hhhh
Confidence            466777777765 4999999999999872  11122357899999999999999999999999995322       4677


Q ss_pred             HHCCCcHhHHHhhccChh-HHHHHHHHHHHH
Q 041643          487 IEFDGVPPLMRLLKISDR-AQVHGLVFLCYL  516 (576)
Q Consensus       487 v~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~l  516 (576)
                      .+.|-+..+..|+...|+ +...|+.+|..+
T Consensus       163 ~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i  193 (757)
T COG5096         163 HELGLIDILKELVADSDPIVIANALASLAEI  193 (757)
T ss_pred             hcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence            888999999999988888 777888888665

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=93.20  E-value=13  Score=39.26  Aligned_cols=115  Identities=20%  Similarity=0.172  Sum_probs=75.9

Q ss_pred             cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHh--cCCHHHHHHHHccCCChHHHHHHHHHHHHhhc
Q 041643          157 NDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVE--EGGILPLLKLLKEAASPDAQTAAANALFNIAT  234 (576)
Q Consensus       157 ~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~--~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~  234 (576)
                      ++....-+.+.|..+..-+...|+.|...|..+.... ...+.|.+  .--+..+.+.++.|+ .+-|.-|+.++.-|+.
T Consensus        38 ~~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~-~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~l  115 (309)
T PF05004_consen   38 QEDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSR-YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLAL  115 (309)
T ss_pred             hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhh
Confidence            3333333556678888778899999999998877642 22233322  224788889999998 6777788888877776


Q ss_pred             C---CchHHHHHHcCCHHHHHHhhcCCCh--hHHHHHHHHHHHHh
Q 041643          235 D---QETVRFIVDVLGVPIIVSVLGEAPV--KVQVAVANLVARMA  274 (576)
Q Consensus       235 ~---~~~~~~iv~~Gavp~LV~lL~s~~~--~vq~~Aa~aL~~LA  274 (576)
                      .   .+....+.+ ...|+|..++.++..  .++..++.+|+-++
T Consensus       116 tlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~  159 (309)
T PF05004_consen  116 TLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICT  159 (309)
T ss_pred             hcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHH
Confidence            4   244555554 488999999987654  34444555555443

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=92.94  E-value=0.13  Score=34.84  Aligned_cols=28  Identities=21%  Similarity=0.325  Sum_probs=24.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          445 MIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       445 ~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                      ++|.++++|++.+++|+..|+++|++++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~   28 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIA   28 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            3789999999999999999999999886

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=92.67  E-value=19  Score=39.87  Aligned_cols=126  Identities=15%  Similarity=0.133  Sum_probs=94.2

Q ss_pred             HhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccC-----CChHHHHHHHHHHHHhhc-CCchHHHHHH
Q 041643          171 IQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEA-----ASPDAQTAAANALFNIAT-DQETVRFIVD  244 (576)
Q Consensus       171 L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g-----~~~~~q~~AA~AL~nLa~-~~~~~~~iv~  244 (576)
                      ....+.+...+|..+|.|+.-.++..|...++.|+.+.|++.|+..     + .+.++-..+-|+-++. .++.+..+++
T Consensus        41 ~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~  119 (446)
T PF10165_consen   41 FESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE  119 (446)
T ss_pred             ccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence            3445778889999999999988888999999999999999999987     5 8999999999999987 5677767765


Q ss_pred             -cCCHHHHHHhhcC--------C---------ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhc
Q 041643          245 -VLGVPIIVSVLGE--------A---------PVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC  298 (576)
Q Consensus       245 -~Gavp~LV~lL~s--------~---------~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~  298 (576)
                       .+++..+++.|..        .         .......+...++|+..+.+.... =.....++.|+.+|.
T Consensus       120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~  190 (446)
T PF10165_consen  120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILR  190 (446)
T ss_pred             HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHH
Confidence             5888888887621        0         223344567778888765443322 123356788888775

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.58  E-value=1.6  Score=49.67  Aligned_cols=112  Identities=14%  Similarity=0.115  Sum_probs=76.2

Q ss_pred             HhHHHHH-HHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-C--
Q 041643          160 ILAWVWS-FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-D--  235 (576)
Q Consensus       160 i~~~v~~-li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~--  235 (576)
                      .+..+|. ++.....++...+..|+..|..|.... .--+.     .....+++|++.. .+++..|...++-.+. .  
T Consensus       195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~  267 (823)
T KOG2259|consen  195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPA  267 (823)
T ss_pred             cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCC
Confidence            3445566 666777778888888888888776532 11122     2467889998887 8999888777665554 2  


Q ss_pred             C---c-hHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChH
Q 041643          236 Q---E-TVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSI  279 (576)
Q Consensus       236 ~---~-~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~  279 (576)
                      +   + +...++++ +...+.+.+++.+..++..|+.+|+.+-..+++
T Consensus       268 ~~e~e~~e~kl~D~-aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee  314 (823)
T KOG2259|consen  268 PLERESEEEKLKDA-AFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE  314 (823)
T ss_pred             cccchhhhhhhHHH-HHHHHHHHHhcCceeeeehHHHHhchHHHhHHH
Confidence            1   1 22334433 566777777888889999999999988765433

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=92.17  E-value=0.24  Score=33.56  Aligned_cols=29  Identities=38%  Similarity=0.529  Sum_probs=25.6

Q ss_pred             HHHHHHHHccCCChHHHHHHHHHHHHhhcC
Q 041643          206 ILPLLKLLKEAASPDAQTAAANALFNIATD  235 (576)
Q Consensus       206 IppLV~LL~~g~~~~~q~~AA~AL~nLa~~  235 (576)
                      +|.|+++|.+.+ ++++..|+.+|+.|+.+
T Consensus         2 lp~l~~~l~D~~-~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPS-PEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SS-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCC-HHHHHHHHHHHHHHHhh
Confidence            699999999988 99999999999999863

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=91.96  E-value=6  Score=38.98  Aligned_cols=106  Identities=20%  Similarity=0.177  Sum_probs=65.3

Q ss_pred             hcCCHHHHHHHHHHHHHHhhcC--cccHHHHHhc--CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 041643          172 QMGQIKSRVDAANELASLARDN--NRNRKIIVEE--GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG  247 (576)
Q Consensus       172 ~~G~~e~k~~AA~~L~~La~~~--~~~~~~I~~~--GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga  247 (576)
                      .+.+=+.|.+|...|..+...+  ..+...+.+.  ..++.++..+.+.. ..+-..|..++..|+..-...-.-.-...
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            4457788899999999988765  2333333221  34567777777766 66778999999999874333222223447


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhcCCh
Q 041643          248 VPIIVSVLGEAPVKVQVAVANLVARMAELDS  278 (576)
Q Consensus       248 vp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~  278 (576)
                      +|.|++.+.++...+++.|..+|..|....+
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~  126 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCS  126 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCC
Confidence            8999999999988899999999999987543

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=91.44  E-value=0.77  Score=44.13  Aligned_cols=90  Identities=19%  Similarity=0.243  Sum_probs=69.3

Q ss_pred             hhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCc-HhHHHhh
Q 041643          421 AMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGV-PPLMRLL  499 (576)
Q Consensus       421 ~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi-~~Lv~LL  499 (576)
                      +.++.+++.++|-|+..+++.-...+|.+...|++.++.|++.|...|+++...+ +        +-=.|-+ ..++.+|
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-~--------ik~k~~l~~~~l~~l   72 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-M--------IKVKGQLFSRILKLL   72 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-c--------eeehhhhhHHHHHHH
Confidence            5778889999999998777655677899999999999999999999999998643 2        1112333 5666777


Q ss_pred             ccChh-HHHHHHHHHHHHhcc
Q 041643          500 KISDR-AQVHGLVFLCYLALS  519 (576)
Q Consensus       500 ~~~d~-vq~~A~~~L~~lal~  519 (576)
                      ...++ ++..|...+..++..
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            66665 888888888887644

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.43  E-value=0.47  Score=42.91  Aligned_cols=67  Identities=21%  Similarity=0.422  Sum_probs=51.2

Q ss_pred             HHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       406 ~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                      .++..|+++|..++++..+.-|+-=||.+++..+..     +-|+-..+.+||.+.+++|+.+|-.|+.++-
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            468889999965545777777888899999977652     2355577888999999999999999998875

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=90.65  E-value=0.78  Score=39.96  Aligned_cols=66  Identities=20%  Similarity=0.243  Sum_probs=50.1

Q ss_pred             CHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHH--cCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 041643          205 GILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVD--VLGVPIIVSVLGEAPVKVQVAVANLVARMA  274 (576)
Q Consensus       205 gIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~--~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA  274 (576)
                      -|||+++.+.+.+ .+++..|..+|.|+++...  ..+..  ......|.+++.+.++.||. +|+.|-++-
T Consensus        28 Il~pVL~~~~D~d-~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~Vr~-~a~~Ld~ll   95 (97)
T PF12755_consen   28 ILPPVLKCFDDQD-SRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDENVRS-AAELLDRLL   95 (97)
T ss_pred             HHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchhHHH-HHHHHHHHh
Confidence            4799999999988 9999999999999997432  33332  45677888888888888764 456665553

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=90.33  E-value=1.3  Score=48.99  Aligned_cols=115  Identities=22%  Similarity=0.226  Sum_probs=90.2

Q ss_pred             HHHHHHhhcCcccHHHHHhcCCHHHHHHHH---------ccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHH
Q 041643          184 NELASLARDNNRNRKIIVEEGGILPLLKLL---------KEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPIIVS  253 (576)
Q Consensus       184 ~~L~~La~~~~~~~~~I~~~GgIppLV~LL---------~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~LV~  253 (576)
                      .+|.-|+++ +.+..-|....++..|+++-         ....++..-.+|.++|.|+--+ +.-|+..++.|..+.+++
T Consensus         3 ~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~   81 (446)
T PF10165_consen    3 ETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE   81 (446)
T ss_pred             HHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence            456667775 56777777777788888876         3344388889999999999985 566778889999999999


Q ss_pred             hhcCC-----ChhHHHHHHHHHHHHhcCChHHHHHHHhc-CCchhHHHhhcc
Q 041643          254 VLGEA-----PVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCM  299 (576)
Q Consensus       254 lL~s~-----~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~-g~I~~LV~LL~~  299 (576)
                      .|+..     +.++.--....|+-+....+..|..+.++ +++..++..|..
T Consensus        82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~  133 (446)
T PF10165_consen   82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALER  133 (446)
T ss_pred             HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHH
Confidence            99876     67888888998888887777888666655 888988887753

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=89.69  E-value=2  Score=43.97  Aligned_cols=82  Identities=15%  Similarity=0.147  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhh
Q 041643          220 DAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLG-EAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL  297 (576)
Q Consensus       220 ~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~-s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL  297 (576)
                      ....+|...|..++- |++.+....++.++..|+++|. +....++..+..+|..+--++|.+...|.+.+|+..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            345678888888777 7888888889999999999994 45678899999999888888899999999999999999999


Q ss_pred             cccc
Q 041643          298 CMDI  301 (576)
Q Consensus       298 ~~~t  301 (576)
                      ++..
T Consensus       186 k~~~  189 (257)
T PF08045_consen  186 KSKS  189 (257)
T ss_pred             cccc
Confidence            8753

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=89.66  E-value=23  Score=40.14  Aligned_cols=119  Identities=21%  Similarity=0.181  Sum_probs=71.1

Q ss_pred             HHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 041643          407 VLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK--EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSK  484 (576)
Q Consensus       407 vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~--~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~  484 (576)
                      .++-|-.++++..++   .-+++.||-|.+..|..  -.+.|..+.+-+--.+.-|+..|..||++|+-+-+.  +-..+
T Consensus       451 aLe~LC~fIEDcey~---~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d--~~~~~  525 (898)
T COG5240         451 ALEVLCTFIEDCEYH---QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD--VVSPQ  525 (898)
T ss_pred             HHHHHHHHHhhcchh---HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc--cccHH
Confidence            467777788765433   34678888887755431  124566666644444566888899999999855432  11112


Q ss_pred             HHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHH---hccchhhHh
Q 041643          485 AIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALE---QARALNALE  536 (576)
Q Consensus       485 ~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~---~~~~l~~Le  536 (576)
                           .....|-+.|+..|. ++-.|..+|-++- +.+.-+.+.   .-+-+|.||
T Consensus       526 -----sv~~~lkRclnD~DdeVRdrAsf~l~~~~-~~da~~pl~~sd~~~dipsle  575 (898)
T COG5240         526 -----SVENALKRCLNDQDDEVRDRASFLLRNMR-LSDACEPLFSSDELGDIPSLE  575 (898)
T ss_pred             -----HHHHHHHHHhhcccHHHHHHHHHHHHhhh-hhhhhhccccccccCCcchhH
Confidence                 223456677877766 8888888887773 222222222   245556665

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=89.61  E-value=1.8  Score=35.80  Aligned_cols=66  Identities=12%  Similarity=0.049  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcC
Q 041643          222 QTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVREN  288 (576)
Q Consensus       222 q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g  288 (576)
                      .+.|.||++++++.+..-..+-+.+.|+.++++-.+ +...++.-+-.+|+-++.. .+.++.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence            467999999999988888888889999999999864 5688999999999988864 67777776665

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=89.55  E-value=8.6  Score=43.77  Aligned_cols=261  Identities=18%  Similarity=0.205  Sum_probs=128.2

Q ss_pred             HHHHHHHHccCCChHHHHHHHHHHHHhhcC---CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHH
Q 041643          206 ILPLLKLLKEAASPDAQTAAANALFNIATD---QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQE  282 (576)
Q Consensus       206 IppLV~LL~~g~~~~~q~~AA~AL~nLa~~---~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~  282 (576)
                      |...+++|++.+ +.+++.||...+.|+.-   ....+.+...|.|  |.+-|....+++--....|+..+-+.. ..+.
T Consensus       606 vStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~-~~~~  681 (975)
T COG5181         606 VSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVH-RFRS  681 (975)
T ss_pred             HHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhh-cccc
Confidence            445567788877 88888888777777642   2223444455543  455555555555555555554444321 0100


Q ss_pred             -HHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHH
Q 041643          283 -EFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVK  361 (576)
Q Consensus       283 -~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk  361 (576)
                       .=--.|.+|.|.-+|++.    |.                                                       
T Consensus       682 mqpPi~~ilP~ltPILrnk----h~-------------------------------------------------------  702 (975)
T COG5181         682 MQPPISGILPSLTPILRNK----HQ-------------------------------------------------------  702 (975)
T ss_pred             cCCchhhccccccHhhhhh----hH-------------------------------------------------------
Confidence             000124445554444432    11                                                       


Q ss_pred             HHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh
Q 041643          362 AKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK  441 (576)
Q Consensus       362 ~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~  441 (576)
                       .+.++...-+..+|...++-|-+-|   ..|         .|-.+|+.|    .+.+ -++..+|..++|++++...- 
T Consensus       703 -Kv~~nti~lvg~I~~~~peyi~~rE---WMR---------IcfeLvd~L----ks~n-KeiRR~A~~tfG~Is~aiGP-  763 (975)
T COG5181         703 -KVVANTIALVGTICMNSPEYIGVRE---WMR---------ICFELVDSL----KSWN-KEIRRNATETFGCISRAIGP-  763 (975)
T ss_pred             -HHhhhHHHHHHHHHhcCcccCCHHH---HHH---------HHHHHHHHH----HHhh-HHHHHhhhhhhhhHHhhcCH-
Confidence             1223444555556665555432221   222         122444444    4444 68899999999999852110 


Q ss_pred             hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhc
Q 041643          442 EKRMIGPLVALLSNRNVDVATEAVIALSKFV--SPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLAL  518 (576)
Q Consensus       442 ~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla--~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal  518 (576)
                       ..++..|.+-|+..+-..+...+.||+=.+  |+.             ...+|.|+.=-+..+. ||.--+-++|.+=.
T Consensus       764 -qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------------fsVlP~lm~dY~TPe~nVQnGvLkam~fmFe  829 (975)
T COG5181         764 -QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------------FSVLPTLMSDYETPEANVQNGVLKAMCFMFE  829 (975)
T ss_pred             -HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------------hhhHHHHHhcccCchhHHHHhHHHHHHHHHH
Confidence             112333333333222223333444444333  211             2345555555555555 88777787887754


Q ss_pred             ccCchHHHHhccchhhHh-hhhcccCCCCCcHHHHHHHHHHHHHhhcCC
Q 041643          519 SAGNSKALEQARALNALE-GAARTVLPQHPELRDLFAQAIYHLTLYQAG  566 (576)
Q Consensus       519 ~~~~~~~l~~~~~l~~Le-~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~  566 (576)
                      .-++...---.-+.|.|| ++-    =-|+-.+....-.+.+|.+-.+|
T Consensus       830 yig~~s~dYvy~itPlleDAlt----DrD~vhRqta~nvI~Hl~Lnc~g  874 (975)
T COG5181         830 YIGQASLDYVYSITPLLEDALT----DRDPVHRQTAMNVIRHLVLNCPG  874 (975)
T ss_pred             HHHHHHHHHHHHhhHHHHhhhc----ccchHHHHHHHHHHHHHhcCCCC
Confidence            444433222234456666 321    12344555666666666664333

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=89.37  E-value=1.6  Score=48.58  Aligned_cols=138  Identities=14%  Similarity=0.149  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhhcCCc---hHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhcc
Q 041643          223 TAAANALFNIATDQE---TVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCM  299 (576)
Q Consensus       223 ~~AA~AL~nLa~~~~---~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~  299 (576)
                      .-+||+|+-.+.+..   -|.-+.++..+.+|+++|+.+...+..-+..+++|+.-.-+..|..+.+.|.|..|+.++.+
T Consensus       405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s  484 (743)
T COG5369         405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS  484 (743)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence            356777777665432   35667788899999999999887777778888899886667789999999999999999854


Q ss_pred             ccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCC
Q 041643          300 DIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGC  379 (576)
Q Consensus       300 ~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~  379 (576)
                      .                                                        |..    ++....|.|..|-+|.
T Consensus       485 K--------------------------------------------------------Dda----Lqans~wvlrHlmync  504 (743)
T COG5369         485 K--------------------------------------------------------DDA----LQANSEWVLRHLMYNC  504 (743)
T ss_pred             c--------------------------------------------------------hhh----hhhcchhhhhhhhhcC
Confidence            2                                                        111    2345668888887776


Q ss_pred             cccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhc
Q 041643          380 LLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAK  436 (576)
Q Consensus       380 ~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~  436 (576)
                      .+++            .|++   .++.+++.++.+..+++ -.+|..++..+.|+.-
T Consensus       505 q~~e------------kf~~---Lakig~~kvl~~~NDpc-~~vq~q~lQilrNftc  545 (743)
T COG5369         505 QKNE------------KFKF---LAKIGVEKVLSYTNDPC-FKVQHQVLQILRNFTC  545 (743)
T ss_pred             cchh------------hhhh---HHhcCHHHHHHHhcCcc-cccHHHHHHHHHhccc
Confidence            5432            2432   56778999999987765 6899999999999864

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=88.80  E-value=1.1  Score=36.99  Aligned_cols=65  Identities=14%  Similarity=0.099  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh--HHHHHHHHHHHHhcccCchHHHHhcc
Q 041643          461 ATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR--AQVHGLVFLCYLALSAGNSKALEQAR  530 (576)
Q Consensus       461 ~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~--vq~~A~~~L~~lal~~~~~~~l~~~~  530 (576)
                      .|.|-||++++++.+     .-...+.+.+.++.++++.+..+.  ++-.++..|+.++....-.+.+.+.|
T Consensus         4 lKaaLWaighIgss~-----~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSP-----LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcCh-----HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            577999999998743     457778788999999999998776  66679999998886555555555544

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=88.76  E-value=30  Score=35.67  Aligned_cols=76  Identities=25%  Similarity=0.215  Sum_probs=52.4

Q ss_pred             ChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhc--CCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHH
Q 041643          420 DAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLS--NRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMR  497 (576)
Q Consensus       420 ~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~--~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~  497 (576)
                      +.-.+..+.-.+|.|-      ..-.||.|.+.|.  ..++-|+-|||.||+.++..               .+++.|.+
T Consensus       200 SalfrhEvAfVfGQl~------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---------------~~~~vL~e  258 (289)
T KOG0567|consen  200 SALFRHEVAFVFGQLQ------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE---------------DCVEVLKE  258 (289)
T ss_pred             hHHHHHHHHHHHhhcc------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---------------HHHHHHHH
Confidence            4566777777888772      2346999999874  34566899999999988742               36667778


Q ss_pred             hhccChh-HHHHHHHHHHHH
Q 041643          498 LLKISDR-AQVHGLVFLCYL  516 (576)
Q Consensus       498 LL~~~d~-vq~~A~~~L~~l  516 (576)
                      .+...+. +...+..+|-.+
T Consensus       259 ~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  259 YLGDEERVVRESCEVALDML  278 (289)
T ss_pred             HcCCcHHHHHHHHHHHHHHH
Confidence            8877666 555555555433

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=88.64  E-value=7.1  Score=46.38  Aligned_cols=82  Identities=11%  Similarity=0.055  Sum_probs=55.3

Q ss_pred             HHHH-HHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh
Q 041643          208 PLLK-LLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVR  286 (576)
Q Consensus       208 pLV~-LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~  286 (576)
                      .|+. +.+.+++...|.-|.-.|+.|....+-..   ..+--..+++-+++++++++..|+.||++++.++-.       
T Consensus       821 kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~---~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~-------  890 (1233)
T KOG1824|consen  821 KLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP---QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP-------  890 (1233)
T ss_pred             HHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc---chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH-------
Confidence            3444 44445547788888888888876432211   112223677889999999999999999999975421       


Q ss_pred             cCCchhHHHhhccc
Q 041643          287 ENVTRSLISLLCMD  300 (576)
Q Consensus       287 ~g~I~~LV~LL~~~  300 (576)
                       ..+|.+...+.+.
T Consensus       891 -~yLpfil~qi~sq  903 (1233)
T KOG1824|consen  891 -KYLPFILEQIESQ  903 (1233)
T ss_pred             -hHHHHHHHHHhcc
Confidence             3578888877653

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=88.20  E-value=1.5  Score=39.75  Aligned_cols=73  Identities=15%  Similarity=0.255  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc
Q 041643          161 LAWVWSFISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT  234 (576)
Q Consensus       161 ~~~v~~li~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~  234 (576)
                      -.+++.++.+|... +.....-|+.-|+.+.+.-|.-+..|-+.|+=...++||.+.+ ++++.+|..|+..|-.
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d-~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHED-PEVRYEALLAVQKLMV  115 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SS-HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence            34677788888443 4555566777799999887777777778888999999999988 9999999999987643

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.15  E-value=60  Score=38.07  Aligned_cols=334  Identities=16%  Similarity=0.217  Sum_probs=171.4

Q ss_pred             HHHHHHHHHhcCCH-HHHHHHHHHHHHHhhcCcccHHHHHhcCC-HHHHHH-HHccCCChHHHHHHHHHHHHhhcCCc-h
Q 041643          163 WVWSFISTIQMGQI-KSRVDAANELASLARDNNRNRKIIVEEGG-ILPLLK-LLKEAASPDAQTAAANALFNIATDQE-T  238 (576)
Q Consensus       163 ~v~~li~~L~~G~~-e~k~~AA~~L~~La~~~~~~~~~I~~~Gg-IppLV~-LL~~g~~~~~q~~AA~AL~nLa~~~~-~  238 (576)
                      ++..++...-.+.. ..|+.+..+|++++.+-+ ....+-.... +-..|. ..+++++..++..|..||.|=-.-.. |
T Consensus       130 li~~lv~nv~~~~~~~~k~~slealGyice~i~-pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~n  208 (859)
T KOG1241|consen  130 LIVTLVSNVGEEQASMVKESSLEALGYICEDID-PEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKAN  208 (859)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHccCC-HHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence            44445554444433 488999999999997633 3333333333 344444 44556658899999999987543111 1


Q ss_pred             H-HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHH-hhccccccCCCcchhhhhHHH
Q 041643          239 V-RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLIS-LLCMDIALDLPKPESAKTTIH  316 (576)
Q Consensus       239 ~-~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~-LL~~~t~~~~~~~i~~~~si~  316 (576)
                      = ..+=..=.+.+.++.-++++.+++..|..+|..|..-  +++- + +    +.+-+ |+.              .++.
T Consensus       209 F~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~L--yY~~-m-~----~yM~~alfa--------------itl~  266 (859)
T KOG1241|consen  209 FNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSL--YYEF-M-E----PYMEQALFA--------------ITLA  266 (859)
T ss_pred             hccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHH--HHHH-H-H----HHHHHHHHH--------------HHHH
Confidence            0 0011111234455555778889999999999888853  2321 1 1    11111 110              0000


Q ss_pred             HHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHH-hhcCCccc-c---hhcccchH
Q 041643          317 SLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWK-LSKGCLLS-L---WSAESNAE  391 (576)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~-La~g~~~~-I---avae~~~~  391 (576)
                      .                                  -+ +.+++|.    -.+.. -|. +|.-..+. +   ...+.+..
T Consensus       267 a----------------------------------mk-s~~deVa----lQaiE-FWsticeEEiD~~~e~~e~~d~~~~  306 (859)
T KOG1241|consen  267 A----------------------------------MK-SDNDEVA----LQAIE-FWSTICEEEIDLAIEYGEAVDQGLP  306 (859)
T ss_pred             H----------------------------------Hc-CCcHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            0                                  00 1233332    12222 232 33211100 0   00000000


Q ss_pred             HHHhhhccCchhHHHHHHHHHHHhhhcC---ChhhHHHHHH---HHHHHhcCCchhhhCcHHH---HHH-hhcCCCHHHH
Q 041643          392 LRRSAFKTNSPAAKAVLDQLLRLIHEES---DAMLQTPAIR---SIGCLAKTFPAKEKRMIGP---LVA-LLSNRNVDVA  461 (576)
Q Consensus       392 lrr~a~k~~s~a~~~vV~~Ll~lL~~~~---~~~lq~~a~~---aLgnLa~~~~~~~~~~I~~---LV~-LL~~~~~~V~  461 (576)
                      --...|-.  .+.+.+++.|+.+|.+.+   +++.=.|+..   +|.=+|+...+   .++|+   +|+ -+++.+..-+
T Consensus       307 p~~~~fa~--~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~r  381 (859)
T KOG1241|consen  307 PSSKYFAR--QALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNR  381 (859)
T ss_pred             chhhHHHH--HHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhh
Confidence            00000100  145678999999997632   2233344432   33333332221   23333   343 6788888888


Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch---HHHHhccchhhH-h
Q 041643          462 TEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS---KALEQARALNAL-E  536 (576)
Q Consensus       462 ~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~---~~l~~~~~l~~L-e  536 (576)
                      .-|+.|.+..-.+.   +++..+.++ .+++|.++.++..... +...+.|+++.++-..+..   .... ...+..| +
T Consensus       382 eaavmAFGSIl~gp---~~~~Lt~iV-~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l-~~~l~~l~~  456 (859)
T KOG1241|consen  382 EAAVMAFGSILEGP---EPDKLTPIV-IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELL-QSKLSALLE  456 (859)
T ss_pred             hHHHHHHHhhhcCC---chhhhhHHH-hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhh-hHHHHHHHH
Confidence            88999999887554   345555555 5799999999984443 5656999999998666522   1111 2223332 2


Q ss_pred             hhhcccCCCCCcHHHHHHHHHHHHH--hhcC-CCCCCCCCC
Q 041643          537 GAARTVLPQHPELRDLFAQAIYHLT--LYQA-GSHPHRQTY  574 (576)
Q Consensus       537 ~~~~~~~~q~~~~~~l~~~a~~~l~--~y~~-~~~~~~~~~  574 (576)
                      |+.     ++|..-.=.--|+.-|.  .|++ -++|+..|+
T Consensus       457 gL~-----DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~  492 (859)
T KOG1241|consen  457 GLN-----DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPA  492 (859)
T ss_pred             Hhh-----hCchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence            442     34544444445555555  5666 444666655

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=87.85  E-value=4.5  Score=38.55  Aligned_cols=105  Identities=17%  Similarity=0.214  Sum_probs=72.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcCc-ccHHHHHhcCCHHHHHHHHcc--------CCChHHHHHHHHHHHHhhcCCch
Q 041643          168 ISTIQMGQIKSRVDAANELASLARDNN-RNRKIIVEEGGILPLLKLLKE--------AASPDAQTAAANALFNIATDQET  238 (576)
Q Consensus       168 i~~L~~G~~e~k~~AA~~L~~La~~~~-~~~~~I~~~GgIppLV~LL~~--------g~~~~~q~~AA~AL~nLa~~~~~  238 (576)
                      +..|+.+....  .-...|...-+.++ .-.+.-++.||+..|+++|..        ......+.....+|..|..+...
T Consensus        72 i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G  149 (187)
T PF06371_consen   72 IKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYG  149 (187)
T ss_dssp             HHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHH
T ss_pred             HHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHH
Confidence            67777775543  22222222122222 334555688999999999953        12257888999999999988887


Q ss_pred             HHHHHH-cCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 041643          239 VRFIVD-VLGVPIIVSVLGEAPVKVQVAVANLVARMA  274 (576)
Q Consensus       239 ~~~iv~-~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA  274 (576)
                      ...+++ .+++..|+..|.+++..++..+...|+.++
T Consensus       150 ~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  150 LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            887775 788999999999999999999999988776

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.49  E-value=42  Score=35.47  Aligned_cols=86  Identities=13%  Similarity=0.207  Sum_probs=61.4

Q ss_pred             HHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh
Q 041643          207 LPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVR  286 (576)
Q Consensus       207 ppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~  286 (576)
                      --||+||.+.+ |.+|..|+.-|.+++...-..-.--+.-.++.+.++++....  -++|+.+|.|++.+ ++.|..+.+
T Consensus         6 ~elv~ll~~~s-P~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~   81 (353)
T KOG2973|consen    6 VELVELLHSLS-PPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQ   81 (353)
T ss_pred             HHHHHHhccCC-hHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHH
Confidence            45889999989 999999999998888761111111123357889999877655  57899999999974 677777776


Q ss_pred             cCCchhHHHhh
Q 041643          287 ENVTRSLISLL  297 (576)
Q Consensus       287 ~g~I~~LV~LL  297 (576)
                      . .+..++..+
T Consensus        82 ~-~~k~l~~~~   91 (353)
T KOG2973|consen   82 D-LLKVLMDML   91 (353)
T ss_pred             H-HHHHHHHHh
Confidence            6 555555555

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=87.03  E-value=61  Score=36.93  Aligned_cols=88  Identities=17%  Similarity=0.121  Sum_probs=64.8

Q ss_pred             HHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 041643          206 ILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFV  285 (576)
Q Consensus       206 IppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~  285 (576)
                      +|+|+.=+.+.. =+.+..++..|+.++......-..-....||.+.+.|-+.+.+++..+-.++-++.... ++-+ |.
T Consensus       256 lpsll~~l~~~k-WrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-dN~d-I~  332 (569)
T KOG1242|consen  256 LPSLLGSLLEAK-WRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-DNPD-IQ  332 (569)
T ss_pred             hhhhHHHHHHHh-hhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-ccHH-HH
Confidence            566666555544 57788999999999987666666677889999999999999999999999999988632 2222 21


Q ss_pred             hcCCchhHHHhhc
Q 041643          286 RENVTRSLISLLC  298 (576)
Q Consensus       286 ~~g~I~~LV~LL~  298 (576)
                        -.||.|++-+.
T Consensus       333 --~~ip~Lld~l~  343 (569)
T KOG1242|consen  333 --KIIPTLLDALA  343 (569)
T ss_pred             --HHHHHHHHHhc
Confidence              13566666664

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=86.91  E-value=5.5  Score=43.09  Aligned_cols=134  Identities=15%  Similarity=0.138  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHH
Q 041643          162 AWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRF  241 (576)
Q Consensus       162 ~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~  241 (576)
                      .+++.+|+....-++..|.-+-.+|..++-.++   +.+++.||+..|++.+-+|. .+..+..+.++..+-.+|..|..
T Consensus       108 ~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~-~~~~~~l~~~lL~lLd~p~tR~y  183 (371)
T PF14664_consen  108 GVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGS-FSISESLLDTLLYLLDSPRTRKY  183 (371)
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhcc-HhHHHHHHHHHHHHhCCcchhhh
Confidence            467777888888888899999999999998654   78889999999999998887 67888888999999888877765


Q ss_pred             HHHcC----CHHHHHHh----hcCCCh-hHHHHHHHHHHHHhcCChHHHHHHHhc--CCchhHHHhhccc
Q 041643          242 IVDVL----GVPIIVSV----LGEAPV-KVQVAVANLVARMAELDSIAQEEFVRE--NVTRSLISLLCMD  300 (576)
Q Consensus       242 iv~~G----avp~LV~l----L~s~~~-~vq~~Aa~aL~~LA~~~~~~r~~i~~~--g~I~~LV~LL~~~  300 (576)
                      +...-    .+.++.+.    .+...+ +.-..++.++..+-..=++.- .+...  .+++.||..|..+
T Consensus       184 l~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl-~l~~~~~~~lksLv~~L~~p  252 (371)
T PF14664_consen  184 LRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL-YLSMNDFRGLKSLVDSLRLP  252 (371)
T ss_pred             hcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee-eeecCCchHHHHHHHHHcCC
Confidence            54322    33444444    111111 233345555554433222211 11111  4677788887644

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots

Probab=86.54  E-value=3.5  Score=38.77  Aligned_cols=76  Identities=18%  Similarity=0.283  Sum_probs=66.4

Q ss_pred             hhHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCchhhHHHHhHHHHHHHHHHHHHHchhcCccc
Q 041643           31 LLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLATSSQPLYERPIRRVAADVAKNLDRSLTLVRRCKHAGVLR  110 (576)
Q Consensus        31 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~~~~C~~~g~~~  110 (576)
                      .|.+.|+.+++.+..|+.-+..+.+-++.|.-...+.-..+    .--++|-+..+....++++++..++.+|.+.+.++
T Consensus        17 eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~----~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~n   92 (147)
T PF05659_consen   17 ELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLN----VELDRPRQEEIERLKELLEKGKELVEKCSKVRRWN   92 (147)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHh----hhcCCchhHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            46688899999999999999999999999999998877653    55778889999999999999999999999877654

Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=85.66  E-value=4.8  Score=39.68  Aligned_cols=119  Identities=17%  Similarity=0.145  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCc-HHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHH
Q 041643          404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRM-IGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEH  482 (576)
Q Consensus       404 ~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~-I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~  482 (576)
                      ...+++.|++.+.+.. ..+...|..+|-.++....- ..++ ++.+...+.++++.++..++..|..+...-+......
T Consensus        92 ~~~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~~-~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   92 ADILLPPLLKKLGDSK-KFIREAANNALDAIIESCSY-SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H---HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCCc-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            4567888988887654 67888999999999875441 2345 5666777899999999999999988864321000011


Q ss_pred             HHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchH
Q 041643          483 SKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSK  524 (576)
Q Consensus       483 ~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~  524 (576)
                      .....=...++.+..++..+++ ++..|-.++..+..+.|+..
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a  212 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA  212 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred             cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence            1111002345677778877777 88888888877766666653

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=85.58  E-value=5.3  Score=38.31  Aligned_cols=91  Identities=15%  Similarity=0.141  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCH-HHHHHh
Q 041643          176 IKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGV-PIIVSV  254 (576)
Q Consensus       176 ~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gav-p~LV~l  254 (576)
                      +..|.++..+|+.|+..-+   . ++ +.-+|.+...|++++ +.+++.|..+|.+|....-.+-    .|-+ ..++.+
T Consensus         2 ~~vR~n~i~~l~DL~~r~~---~-~v-e~~~~~l~~~L~D~~-~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYP---N-LV-EPYLPNLYKCLRDED-PLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCc---H-HH-HhHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence            5678899999999986422   2 22 346899999999998 9999999999999987432221    2333 778888


Q ss_pred             hcCCChhHHHHHHHHHHHHhcC
Q 041643          255 LGEAPVKVQVAVANLVARMAEL  276 (576)
Q Consensus       255 L~s~~~~vq~~Aa~aL~~LA~~  276 (576)
                      |.+.+++++..|...+..+...
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHh
Confidence            8999999999999999988864

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=84.84  E-value=74  Score=38.71  Aligned_cols=68  Identities=16%  Similarity=0.083  Sum_probs=42.0

Q ss_pred             CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCC-hhHHHHHHHHHHHHhc
Q 041643          204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAP-VKVQVAVANLVARMAE  275 (576)
Q Consensus       204 GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~-~~vq~~Aa~aL~~LA~  275 (576)
                      +.|.-|+.-|++.+ ..+.-.||.-++.++..-.  ..+++. +|...++++.-.. +..=.-++-+|+.||.
T Consensus       341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp--~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~  409 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLP--PELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELAL  409 (1133)
T ss_pred             HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCc--HHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence            57778888887777 7888889999999988433  222222 4555666554332 3333445555555553

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=84.44  E-value=7  Score=45.84  Aligned_cols=105  Identities=18%  Similarity=0.127  Sum_probs=82.1

Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchH
Q 041643          160 ILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETV  239 (576)
Q Consensus       160 i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~  239 (576)
                      ++..+..+..-++..+++.|..|-++|..| +. +   +.+  .-.++|+.++|.+++ +.+++.||-|+++|=.  -.+
T Consensus        90 ~lLavNti~kDl~d~N~~iR~~AlR~ls~l-~~-~---el~--~~~~~~ik~~l~d~~-ayVRk~Aalav~kly~--ld~  159 (757)
T COG5096          90 ALLAVNTIQKDLQDPNEEIRGFALRTLSLL-RV-K---ELL--GNIIDPIKKLLTDPH-AYVRKTAALAVAKLYR--LDK  159 (757)
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHHhc-Ch-H---HHH--HHHHHHHHHHccCCc-HHHHHHHHHHHHHHHh--cCH
Confidence            334455556778888999999998888765 22 1   222  226899999999999 9999999999999954  456


Q ss_pred             HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 041643          240 RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMA  274 (576)
Q Consensus       240 ~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA  274 (576)
                      +...+.|.+-.+..++.+.++.+...|..+|..+-
T Consensus       160 ~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~  194 (757)
T COG5096         160 DLYHELGLIDILKELVADSDPIVIANALASLAEID  194 (757)
T ss_pred             hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence            67778999999999999999988888777777655

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=83.46  E-value=82  Score=36.00  Aligned_cols=96  Identities=16%  Similarity=0.120  Sum_probs=68.5

Q ss_pred             HHHHHHHHc----cCCChHHHHHHHHHHHHhhcCC--chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChH
Q 041643          206 ILPLLKLLK----EAASPDAQTAAANALFNIATDQ--ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSI  279 (576)
Q Consensus       206 IppLV~LL~----~g~~~~~q~~AA~AL~nLa~~~--~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~  279 (576)
                      +.|.+.+.+    +++ -.-++.|+.|++.+-..+  +....+| ..++|.+.....++..-++..+||+++.||.+   
T Consensus       364 ~~pVl~FvEqni~~~~-w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---  438 (858)
T COG5215         364 MRPVLGFVEQNIRSES-WANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH---  438 (858)
T ss_pred             HHHHHHHHHHhccCch-hhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH---
Confidence            345555554    334 556678889999887754  3345566 45899999999888888999999999999954   


Q ss_pred             HHHHHHhcCCchhHHHhhccccccCCCc
Q 041643          280 AQEEFVRENVTRSLISLLCMDIALDLPK  307 (576)
Q Consensus       280 ~r~~i~~~g~I~~LV~LL~~~t~~~~~~  307 (576)
                      .-+.|-..|-+++.|+-..-| .+++++
T Consensus       439 va~~i~p~~Hl~~~vsa~liG-l~D~p~  465 (858)
T COG5215         439 VAMIISPCGHLVLEVSASLIG-LMDCPF  465 (858)
T ss_pred             HHHhcCccccccHHHHHHHhh-hhccch
Confidence            445666778888888865444 345665

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=82.67  E-value=4.1  Score=39.70  Aligned_cols=116  Identities=25%  Similarity=0.327  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHH----HHHHHHhhhcCChhhHHHHHHHH
Q 041643          356 ETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVL----DQLLRLIHEESDAMLQTPAIRSI  431 (576)
Q Consensus       356 ~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV----~~Ll~lL~~~~~~~lq~~a~~aL  431 (576)
                      .||..|  ++..|+.+|..|=+|.......+|.. .-++..|.+-|--....+    ..|+..|..+.+..++...++++
T Consensus        50 ~Dp~~k--vR~aA~~~l~~lL~gsk~~L~~Ae~~-~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~l  126 (182)
T PF13251_consen   50 KDPSPK--VRAAAASALAALLEGSKPFLAQAEES-KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCL  126 (182)
T ss_pred             cCCchh--HHHHHHHHHHHHHHccHHHHHHHHhc-CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            366665  67899999999988865555555532 112335654433332233    44778888777788899999999


Q ss_pred             HHHhcCCchh--hhCcHHHHHH----hhcCCCHHHHHHHHHHHHhhcCC
Q 041643          432 GCLAKTFPAK--EKRMIGPLVA----LLSNRNVDVATEAVIALSKFVSP  474 (576)
Q Consensus       432 gnLa~~~~~~--~~~~I~~LV~----LL~~~~~~V~~eAa~AL~nla~~  474 (576)
                      +.|+...+-.  +.+.++.+|.    ++.+.+.+|+..+..+++-+.+.
T Consensus       127 a~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  127 AVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV  175 (182)
T ss_pred             HHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            9998765531  3455555444    55788999999999898877653

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=81.78  E-value=2.9  Score=39.51  Aligned_cols=101  Identities=19%  Similarity=0.159  Sum_probs=67.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHHhhcCcccHHHHH-hcCCHHHHHHHHc--cCCChHHHHHHHHHHHHhhcCCchHHHHHHcC
Q 041643          170 TIQMGQIKSRVDAANELASLARDNNRNRKIIV-EEGGILPLLKLLK--EAASPDAQTAAANALFNIATDQETVRFIVDVL  246 (576)
Q Consensus       170 ~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~-~~GgIppLV~LL~--~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G  246 (576)
                      ++..++.+.+..+..++..|=-..++-...|. .+|..+-++.+..  +.+ ...|..++.+| +.|...+.++..+...
T Consensus        51 ~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~-~~~~~~~lell-~aAc~d~~~r~~I~~~  128 (157)
T PF11701_consen   51 LLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKD-RKVQKAALELL-SAACIDKSCRTFISKN  128 (157)
T ss_dssp             HHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS--HHHHHHHHHHH-HHHTTSHHHHHCCHHH
T ss_pred             HHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCC-HHHHHHHHHHH-HHHHccHHHHHHHHHH
Confidence            44555556777777777766655555555555 5566888888888  445 77788887777 5555556666555566


Q ss_pred             CHHHHHHhhcC-CChh-HHHHHHHHHHH
Q 041643          247 GVPIIVSVLGE-APVK-VQVAVANLVAR  272 (576)
Q Consensus       247 avp~LV~lL~s-~~~~-vq~~Aa~aL~~  272 (576)
                      +++.|-++++. .++. ++..|+-+|..
T Consensus       129 ~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen  129 YVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            78999999964 4455 67777776653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=81.38  E-value=3.2  Score=46.36  Aligned_cols=110  Identities=15%  Similarity=0.176  Sum_probs=83.3

Q ss_pred             HHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCH
Q 041643          406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRS  480 (576)
Q Consensus       406 ~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~  480 (576)
                      .+++.|+++|++.+ ..+.-|+..++.|++--|.+-     ++++|..|++++.+++...|++..|.|..+.-+..   .
T Consensus       431 ~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq---~  506 (743)
T COG5369         431 PIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ---K  506 (743)
T ss_pred             chHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc---c
Confidence            47899999997744 556678899999998766653     46789999999999999999999999998863210   1


Q ss_pred             HHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcc
Q 041643          481 EHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALS  519 (576)
Q Consensus       481 ~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~  519 (576)
                      +.+-.....-|+..++.+-+..+- +|...+..|.|+..+
T Consensus       507 ~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~  546 (743)
T COG5369         507 NEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCD  546 (743)
T ss_pred             hhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccc
Confidence            222345556688888888876665 898888888888653

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=81.02  E-value=3.6  Score=35.82  Aligned_cols=65  Identities=14%  Similarity=0.247  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhh----hCcHHHHHHhhcCCCHHHHHHHHHHHHhh
Q 041643          405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE----KRMIGPLVALLSNRNVDVATEAVIALSKF  471 (576)
Q Consensus       405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~----~~~I~~LV~LL~~~~~~V~~eAa~AL~nl  471 (576)
                      +.++++++..+.+++ ..+.+.|+.+|.|+++..++.-    ..+...|.+++...++.|+..| ..|-++
T Consensus        26 ~~Il~pVL~~~~D~d-~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   26 DEILPPVLKCFDDQD-SRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL   94 (97)
T ss_pred             HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence            457889999998876 8999999999999998655311    2356778888888888877655 444443

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=80.94  E-value=6.7  Score=40.84  Aligned_cols=116  Identities=18%  Similarity=0.212  Sum_probs=76.7

Q ss_pred             HHHHHHH-HHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCC-C-CCCCHHH
Q 041643          406 AVLDQLL-RLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSP-D-NFNRSEH  482 (576)
Q Consensus       406 ~vV~~Ll-~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~-~-n~~~~~~  482 (576)
                      ++++.|+ .-+++.+ +.++.-|++++|-++-.........++-+.+.++.++..++..|..+|.-+... | .......
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~  104 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES  104 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence            4555555 5566655 799999999999988655544445688889988888999999999999977632 1 1100000


Q ss_pred             H--HHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCc
Q 041643          483 S--KAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGN  522 (576)
Q Consensus       483 ~--~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~  522 (576)
                      .  ...-...-++.+.+.|.+.+. +|..|+..+|.+.++..-
T Consensus       105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i  147 (298)
T PF12719_consen  105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI  147 (298)
T ss_pred             ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence            0  001122345566666666665 899999999998765543

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=80.80  E-value=17  Score=37.35  Aligned_cols=80  Identities=25%  Similarity=0.282  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcCC
Q 041643          180 VDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEA  258 (576)
Q Consensus       180 ~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s~  258 (576)
                      ..|...|--++--+++.+....+..++.-|++||.....+..|..+..+|..+-. ++.|.+..-+.+|+..++.++++.
T Consensus       109 ~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~  188 (257)
T PF08045_consen  109 ALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSK  188 (257)
T ss_pred             HHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccc
Confidence            3455566555555688889999999999999999554338999999999866555 689999899999999999999876


Q ss_pred             C
Q 041643          259 P  259 (576)
Q Consensus       259 ~  259 (576)
                      .
T Consensus       189 ~  189 (257)
T PF08045_consen  189 S  189 (257)
T ss_pred             c
Confidence            4

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=80.22  E-value=13  Score=44.81  Aligned_cols=106  Identities=16%  Similarity=0.203  Sum_probs=81.7

Q ss_pred             HHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcC
Q 041643          168 ISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVL  246 (576)
Q Consensus       168 i~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G  246 (576)
                      +..|++- +...+.-|...+.-+.. +.+....+++.|.+-.|+.+|-+ - |+.++.+...|+.|+++++....-.++|
T Consensus      1777 ~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~-PS~R~~vL~vLYAL~S~~~i~keA~~hg 1853 (2235)
T KOG1789|consen 1777 ITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-Q-PSMRARVLDVLYALSSNGQIGKEALEHG 1853 (2235)
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-C-hHHHHHHHHHHHHHhcCcHHHHHHHhcC
Confidence            4445543 44555566666554444 57777888899999999999965 4 6888999999999999999988889999


Q ss_pred             CHHHHHHhh-cCCChhHHHHHHHHHHHHhcC
Q 041643          247 GVPIIVSVL-GEAPVKVQVAVANLVARMAEL  276 (576)
Q Consensus       247 avp~LV~lL-~s~~~~vq~~Aa~aL~~LA~~  276 (576)
                      ++-.+.+++ .+.+..++.++|..++.|-.+
T Consensus      1854 ~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1854 GLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred             chhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence            988887776 455678888899999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	576
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		1e-04

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 181 DAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETV 239
           +AA  LA++A   +   K IV+ GG+  L+KLL    S + Q  AA AL NIA+   E +
Sbjct: 63  EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAI 121
Query: 240 RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMA 274
           + IVD  GV ++V +L     +VQ   A  +A +A
Sbjct: 122 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	576
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-19
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-18
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-18
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-12
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-09
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-08
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-08
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-18
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-18
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-18
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-08
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-18
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-18
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-17
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-11
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-04
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-18
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-18
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-11
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-08
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-06
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-17
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-11
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-09
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-07
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-14
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-12
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-10
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	8e-07
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	5e-05
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-13
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-12
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-07
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-07
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	8e-05
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-12
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-10
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-09
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-09
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-06
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-06
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-05
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-04
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-11
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-09
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-06
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-06
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-04
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	9e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-11
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-11
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-08
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-05
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-05
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-04
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-10
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-07
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-07
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-07
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-08
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-07
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-07
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-07
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-07
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-05
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-07
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-07
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	8e-05

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 89.2 bits (221), Expect = 8e-19
 Identities = 47/379 (12%), Positives = 117/379 (30%), Gaps = 66/379 (17%)

Query: 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAA 226
               +          AA  +  L++       I+     +  +++ ++     +     A
Sbjct: 19  LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 78

Query: 227 NALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVR 286
             L N++  +E +  I    G+P +V +LG     V       +  +      A+     
Sbjct: 79  GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 138

Query: 287 ENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQ 346
               + +++LL      ++         +  L    +E                      
Sbjct: 139 AGGLQKMVALLNKT---NVKFLAITTDCLQILAYGNQE---------------------- 173

Query: 347 HYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSA------FKTN 400
                          +K+ I  +          L+++    +  +L  +           
Sbjct: 174 ---------------SKLIILASGGP-----QALVNIMRTYTYEKLLWTTSRVLKVLSVC 213

Query: 401 SPAAKAVLDQ-----LLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKR--MIGPLVALL 453
           S    A+++      L   + + S  +     + ++  L+     +E    ++G LV LL
Sbjct: 214 SSNKPAIVEAGGMQALGLHLTDPSQRL-VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 272

Query: 454 SNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKIS---DRAQVHGL 510
            + +++V T A   LS     +  N+      + +  G+  L+R +  +   +      +
Sbjct: 273 GSDDINVVTCAAGILSNLTCNNYKNK----MMVCQVGGIEALVRTVLRAGDREDITEPAI 328

Query: 511 VFLCYLALSAGNSKALEQA 529
             L +L      ++  + A
Sbjct: 329 CALRHLTSRHQEAEMAQNA 347

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 64/412 (15%), Positives = 129/412 (31%), Gaps = 61/412 (14%)

Query: 174 GQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIA 233
             +K      + L  LA  N  ++ II+  GG   L+ +++           +  L  ++
Sbjct: 152 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 211

Query: 234 TDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSL 293
                   IV+  G+  +   L +   ++     N +  +  L   A ++   E +  +L
Sbjct: 212 VCSSNKPAIVEAGGMQALGLHLTDPSQRLV---QNCLWTLRNLSDAATKQEGMEGLLGTL 268

Query: 294 ISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTN-VTNNSDGSSRGGHGQHYNKKD 352
           + LL                     + +        +N   NN                 
Sbjct: 269 VQLLG-----------------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 311

Query: 353 RELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLL 412
           R +     +  +      AL  L+             AE+ ++A           L  ++
Sbjct: 312 RTVLRAGDREDITEPAICALRHLTSRH--------QEAEMAQNAV-----RLHYGLPVVV 358

Query: 413 RLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRM-----IGPLVALLSNRNVDVATEAVIA 467
           +L+H  S   L    +  I  LA   PA    +     I  LV LL   + D      + 
Sbjct: 359 KLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 417

Query: 468 LSKFVSPD----------------NFNRSEHSKAII-EFDGVPPLMRLLKI-SDRAQVHG 509
            ++    +                   R  H++ +I   + +P  ++LL    +  Q   
Sbjct: 418 GTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 477

Query: 510 LVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLT 561
              LC LA     ++A+E   A   L     +   ++  +    A  ++ ++
Sbjct: 478 AGVLCELAQDKEAAEAIEAEGATAPLTELLHS---RNEGVATYAAAVLFRMS 526

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 86.9 bits (215), Expect = 4e-18
 Identities = 54/401 (13%), Positives = 118/401 (29%), Gaps = 58/401 (14%)

Query: 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAA 226
            +  +          A   L +L       +  +   GG+  ++ LL +  +        
Sbjct: 103 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITT 161

Query: 227 NALFNIA-TDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFV 285
           + L  +A  +QE+   I+   G   +V+++     +  +   + V ++  + S  +   V
Sbjct: 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV 221

Query: 286 RENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHG 345
                ++L         L  P     +  + +L      +++ +T               
Sbjct: 222 EAGGMQALGLH------LTDPSQRLVQNCLWTLRN----LSDAATKQEGMEGLLGTLVQL 271

Query: 346 QHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAK 405
                    L + ++   V    A  L  L+            N + +    +       
Sbjct: 272 ---------LGSDDI--NVVTCAAGILSNLTCN----------NYKNKMMVCQVG----- 305

Query: 406 AVLDQLLRLIHEESD-AMLQTPAIRSIGCLAKTFPAKEKRM--------IGPLVALLSNR 456
             ++ L+R +    D   +  PAI ++  L       E           +  +V LL   
Sbjct: 306 -GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 364

Query: 457 NVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD-RAQVHGLVFLCY 515
           +     +A + L + ++    N       + E   +P L++LL  +    Q    +    
Sbjct: 365 SHWPLIKATVGLIRNLALCPANH----APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 420

Query: 516 LALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQA 556
                G            AL   AR         R +    
Sbjct: 421 QQFVEGVRMEEIVEGCTGALHILAR-----DVHNRIVIRGL 456

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 68.0 bits (166), Expect = 4e-12
 Identities = 56/338 (16%), Positives = 105/338 (31%), Gaps = 73/338 (21%)

Query: 171 IQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEA-ASPDAQTAAANAL 229
           +    I     AA  L++L  +N +N+ ++ + GGI  L++ +  A    D    A  AL
Sbjct: 272 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

Query: 230 FNIATD----QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFV 285
            ++ +     +     +    G+P++V +L        +     + R   L         
Sbjct: 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR 391

Query: 286 RENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHG 345
            +     L+ LL                                  V  + D   R   G
Sbjct: 392 EQGAIPRLVQLL----------------------------------VRAHQDTQRRTSMG 417

Query: 346 QHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAK 405
               +    +   E+       C  AL  L+            +   R      N     
Sbjct: 418 GTQQQFVEGVRMEEIVE----GCTGALHILA-----------RDVHNRIVIRGLN----- 457

Query: 406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIG------PLVALLSNRNVD 459
             +   ++L++   + + Q  A   +  LA+    +    I       PL  LL +RN  
Sbjct: 458 -TIPLFVQLLYSPIENI-QRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEG 513

Query: 460 VATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMR 497
           VAT A   L +     + ++ +  K  +  +    L R
Sbjct: 514 VATYAAAVLFRM----SEDKPQDYKKRLSVELTSSLFR 547

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 58.0 bits (140), Expect = 6e-09
 Identities = 32/164 (19%), Positives = 54/164 (32%), Gaps = 8/164 (4%)

Query: 182 AANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRF 241
               L  LARD   NR +I     I   ++LL  +   + Q  AA  L  +A D+E    
Sbjct: 436 CTGALHILARDV-HNRIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCELAQDKEAAEA 493

Query: 242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDI 301
           I        +  +L      V    A ++ RM+E      ++ +   +T SL        
Sbjct: 494 IEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR------ 547

Query: 302 ALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHG 345
              +   E+A   +    Q +     +      +      G   
Sbjct: 548 TEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDA 591

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 28/151 (18%), Positives = 46/151 (30%), Gaps = 22/151 (14%)

Query: 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLK------------- 214
           +  +        + A   L         N   + E+G I  L++LL              
Sbjct: 358 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 417

Query: 215 --------EAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAV 266
                        +       AL  +A D      I  +  +P+ V +L      +Q   
Sbjct: 418 GTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 477

Query: 267 ANLVARMAELDSIAQEEFVRENVTRSLISLL 297
           A ++  +A+ D  A E    E  T  L  LL
Sbjct: 478 AGVLCELAQ-DKEAAEAIEAEGATAPLTELL 507

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 54.2 bits (130), Expect = 7e-08
 Identities = 39/298 (13%), Positives = 87/298 (29%), Gaps = 59/298 (19%)

Query: 186 LASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDV 245
           L S  ++    +  +    G+  ++KLL   +      A    + N+A        + + 
Sbjct: 334 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQ 393

Query: 246 LGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDL 305
             +P +V +L  A    Q   +    +   ++ +  EE + E  T +L  L        +
Sbjct: 394 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE-IVEGCTGALHILARDVHNRIV 452

Query: 306 PKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVR 365
            +  +    I   VQ+                                 L +P     ++
Sbjct: 453 IRGLNT---IPLFVQL---------------------------------LYSPI--ENIQ 474

Query: 366 IACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQT 425
              A  L +L+            + E   +               L  L+H  ++  + T
Sbjct: 475 RVAAGVLCELA-----------QDKEAAEAIEAEG------ATAPLTELLHSRNEG-VAT 516

Query: 426 PAIRSIGCLAKTFPAKEKRMIG--PLVALLSNRNVDVATEAVIALSKFVSPDNFNRSE 481
            A   +  +++  P   K+ +      +L     +     A + L      +     +
Sbjct: 517 YAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQ 574

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 29/181 (16%)

Query: 362 AKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDA 421
            +     A  L  LS            + E   + FK+        +  L++++      
Sbjct: 71  VETARCTAGTLHNLSH-----------HREGLLAIFKSG------GIPALVKML-GSPVD 112

Query: 422 MLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDN 476
            +   AI ++  L                +  +VALL+  NV         L      + 
Sbjct: 113 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172

Query: 477 FNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLV--FLCYLALSAGNSKALEQARALNA 534
            ++      I+   G   L+ +++     ++       L  L++ + N  A+ +A  + A
Sbjct: 173 ESKL----IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 228

Query: 535 L 535
           L
Sbjct: 229 L 229

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 89.3 bits (221), Expect = 1e-18
 Identities = 68/414 (16%), Positives = 133/414 (32%), Gaps = 59/414 (14%)

Query: 171 IQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALF 230
           +    +K      + L  LA  N  ++ II+  GG   L+ +++           +  L 
Sbjct: 285 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 344

Query: 231 NIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVT 290
            ++        IV+  G+  +   L +   ++          +  L   A ++   E + 
Sbjct: 345 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL---WTLRNLSDAATKQEGMEGLL 401

Query: 291 RSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNK 350
            +L+ LL  D   D+     A   + +L            N  N       GG       
Sbjct: 402 GTLVQLLGSD---DINVVTCAAGILSNLT---------CNNYKNKMMVCQVGGIEALV-- 447

Query: 351 KDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQ 410
             R +     +  +      AL  L+            +AE+ ++A           L  
Sbjct: 448 --RTVLRAGDREDITEPAICALRHLTSRH--------QDAEMAQNAV-----RLHYGLPV 492

Query: 411 LLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRM-----IGPLVALLSNRNVDVATEAV 465
           +++L+H  S   L    +  I  LA   PA    +     I  LV LL   + D      
Sbjct: 493 VVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 551

Query: 466 IALSKFVSPD----------------NFNRSEHSK-AIIEFDGVPPLMRLLKI-SDRAQV 507
           +  ++    +                   R  H++  I   + +P  ++LL    +  Q 
Sbjct: 552 MGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQR 611

Query: 508 HGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLT 561
                LC LA     ++A+E   A   L     +   ++  +    A  ++ ++
Sbjct: 612 VAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS---RNEGVATYAAAVLFRMS 662

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 88.6 bits (219), Expect = 1e-18
 Identities = 49/353 (13%), Positives = 113/353 (32%), Gaps = 44/353 (12%)

Query: 182 AANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRF 241
           AA  +  L++       I+     +  +++ ++     +     +  L N++  +E +  
Sbjct: 170 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229

Query: 242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDI 301
           I    G+P +V++LG     V       +  +      A+         + +++LL    
Sbjct: 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 289

Query: 302 ALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVK 361
              L         +  L    +E                          K   L +   +
Sbjct: 290 VKFL---AITTDCLQILAYGNQE-------------------------SKLIILASGGPQ 321

Query: 362 AKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDA 421
           A V I       KL       L      +  + +  +         +  L   + + S  
Sbjct: 322 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG------GMQALGLHLTDPSQR 375

Query: 422 MLQTPAIRSIGCLAK--TFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNR 479
           +     + ++  L+   T     + ++G LV LL + +++V T A   LS     +  N+
Sbjct: 376 L-VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434

Query: 480 SEHSKAIIEFDGVPPLMRLLKI---SDRAQVHGLVFLCYLALSAGNSKALEQA 529
                 + +  G+  L+R +      +      +  L +L     +++  + A
Sbjct: 435 ----MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 87.4 bits (216), Expect = 4e-18
 Identities = 56/387 (14%), Positives = 117/387 (30%), Gaps = 58/387 (14%)

Query: 181 DAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETV 239
            A   L +L       +  +   GG+  ++ LL +  +        + L  +A  +QE+ 
Sbjct: 253 HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESK 311

Query: 240 RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCM 299
             I+   G   +V+++     +  +   + V ++  + S  +   V     ++L      
Sbjct: 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH--- 368

Query: 300 DIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPE 359
              L  P     +  + +L  +    T++             G  G         L + +
Sbjct: 369 ---LTDPSQRLVQNCLWTLRNLSDAATKQEGM---------EGLLGTLVQL----LGSDD 412

Query: 360 VKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEES 419
           +   V    A  L  L+            N + +    +         ++ L+R +    
Sbjct: 413 I--NVVTCAAGILSNLTCN----------NYKNKMMVCQVG------GIEALVRTVLRAG 454

Query: 420 D-AMLQTPAIRSIGCLAKTFPAKEKRM--------IGPLVALLSNRNVDVATEAVIALSK 470
           D   +  PAI ++  L       E           +  +V LL   +     +A + L +
Sbjct: 455 DREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 514

Query: 471 FVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD-RAQVHGLVFLCYLALSAGNSKALEQA 529
            ++    N       + E   +P L++LL  +    Q    +         G        
Sbjct: 515 NLALCPANH----APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 570

Query: 530 RALNALEGAARTVLPQHPELRDLFAQA 556
               AL   AR         R +    
Sbjct: 571 ACTGALHILAR-----DIHNRIVIRGL 592

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 69.3 bits (169), Expect = 2e-12
 Identities = 53/420 (12%), Positives = 115/420 (27%), Gaps = 50/420 (11%)

Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238
               +  L  L+   + N+  IVE GG+  L   L    S          L N++     
Sbjct: 336 LWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLT-DPSQRLVQNCLWTLRNLSDAATK 393

Query: 239 VRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC 298
                    +  +V +LG   + V    A +++ +   +   +    +     +L+  + 
Sbjct: 394 Q--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 451

Query: 299 MDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETP 358
                +    E A   +  L       T +  +     +            K    L  P
Sbjct: 452 RAGDREDIT-EPAICALRHL-------TSRHQDAEMAQNAVRLHYGLPVVVK----LLHP 499

Query: 359 EVKAKVRIACAEALWKLSK-----------GCLLSLWS--AESNAELRRSAFKTNSPAAK 405
                +  A    +  L+            G +  L      ++ + +R      +    
Sbjct: 500 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 559

Query: 406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAV 465
               ++  ++   + A+     I +     +         I   V LL +   ++   A 
Sbjct: 560 VEGVRMEEIVEACTGAL----HILARDIHNRIVIRGLN-TIPLFVQLLYSPIENIQRVAA 614

Query: 466 IALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD-RAQVHGLVFLCYLA------- 517
             L +          E ++AI       PL  LL   +     +    L  ++       
Sbjct: 615 GVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 669

Query: 518 ---LSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAGSHPHRQTY 574
              LS   + +L +   +   E     +          + Q       + +G +      
Sbjct: 670 KKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMG 729

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 65.4 bits (159), Expect = 3e-11
 Identities = 55/351 (15%), Positives = 106/351 (30%), Gaps = 73/351 (20%)

Query: 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEA-ASPDAQTAAA 226
           +  +    I     AA  L++L  +N +N+ ++ + GGI  L++ +  A    D    A 
Sbjct: 405 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 464

Query: 227 NALFNIATD----QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQE 282
            AL ++ +     +     +    G+P++V +L        +     + R   L      
Sbjct: 465 CALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 524

Query: 283 EFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRG 342
               +     L+ LL         +     T    +  ++ E                  
Sbjct: 525 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME------------------ 566

Query: 343 GHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP 402
                               ++  AC  AL  L++           N  + R        
Sbjct: 567 --------------------EIVEACTGALHILARD--------IHNRIVIRGL------ 592

Query: 403 AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSNRNV 458
                +   ++L++   + + Q  A   +  LA+   A      +    PL  LL +RN 
Sbjct: 593 ---NTIPLFVQLLYSPIENI-QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNE 648

Query: 459 DVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHG 509
            VAT A   L +         SE      +      L   L  ++    + 
Sbjct: 649 GVATYAAAVLFRM--------SEDKPQDYKKRLSVELTSSLFRTEPMTWNE 691

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 55.4 bits (133), Expect = 4e-08
 Identities = 53/293 (18%), Positives = 100/293 (34%), Gaps = 37/293 (12%)

Query: 28  LPILLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLATSSQPLYERPIRRVAA 87
           L + L D   +  Q    + +  ++   + E +  +L + V+L  S        +   AA
Sbjct: 365 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI----NVVTCAA 420

Query: 88  DVAKNL--DRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIFDSD 145
            +  NL  +     +  C+  G+   V ++    D + +    E +I  +R L +     
Sbjct: 421 GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI---TEPAICALRHLTSRHQDA 477

Query: 146 EVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGG 205
           E+  +   +    P++      +  +        + A   L         N   + E+G 
Sbjct: 478 EMAQNAVRLHYGLPVV------VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGA 531

Query: 206 ILPLLKLLKEA---------------------ASPDAQTAAANALFNIATDQETVRFIVD 244
           I  L++LL  A                        +   A   AL  +A D      I  
Sbjct: 532 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRG 591

Query: 245 VLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297
           +  +P+ V +L      +Q   A ++  +A+ D  A E    E  T  L  LL
Sbjct: 592 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELL 643

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 29/205 (14%), Positives = 62/205 (30%), Gaps = 32/205 (15%)

Query: 364 VRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAML 423
                +  L  LS            + E   + FK+        +  L+ ++       +
Sbjct: 209 TARCTSGTLHNLSH-----------HREGLLAIFKSG------GIPALVNML-GSPVDSV 250

Query: 424 QTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFN 478
              AI ++  L                +  +VALL+  NV         L      +  +
Sbjct: 251 LFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 310

Query: 479 RSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLV--FLCYLALSAGNSKALEQARALNALE 536
           +      I+   G   L+ +++     ++       L  L++ + N  A+ +A  + AL 
Sbjct: 311 K----LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 366

Query: 537 GAARTVLPQHPELRDLFAQAIYHLT 561
                       L       + +L+
Sbjct: 367 LHLTD---PSQRLVQNCLWTLRNLS 388

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 88.3 bits (219), Expect = 1e-18
 Identities = 52/377 (13%), Positives = 114/377 (30%), Gaps = 48/377 (12%)

Query: 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAA 226
               +          AA  +  L++       I+     +  +++ ++     +     A
Sbjct: 22  LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 81

Query: 227 NALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVR 286
             L N++  +E +  I    G+P +V +LG     V       +  +      A+     
Sbjct: 82  GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 141

Query: 287 ENVTRSLISLL---CMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGG 343
               + +++LL    +               +  L    +E                   
Sbjct: 142 AGGLQKMVALLNKTNVKFL------AITTDCLQILAYGNQE------------------- 176

Query: 344 HGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPA 403
                  K   L +   +A V I       KL       L      +  + +        
Sbjct: 177 ------SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI------V 224

Query: 404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKR--MIGPLVALLSNRNVDVA 461
               +  L   + + S  +     + ++  L+     +E    ++G LV LL + +++V 
Sbjct: 225 EAGGMQALGLHLTDPSQRL-VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVV 283

Query: 462 TEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKI-SDRAQVHGLVFLCYLALSA 520
           T A   LS     +  N+      + +  G+  L+R +    DR  +          L++
Sbjct: 284 TCAAGILSNLTCNNYKNK----MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339

Query: 521 GNSKALEQARALNALEG 537
            + +A     A+    G
Sbjct: 340 RHQEAEMAQNAVRLHYG 356

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 86.4 bits (214), Expect = 5e-18
 Identities = 65/411 (15%), Positives = 131/411 (31%), Gaps = 59/411 (14%)

Query: 174 GQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIA 233
             +K      + L  LA  N  ++ II+  GG   L+ +++           +  L  ++
Sbjct: 155 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214

Query: 234 TDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSL 293
                   IV+  G+  +   L +   ++       +  ++     A ++   E +  +L
Sbjct: 215 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTL 271

Query: 294 ISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDR 353
           + LL  D   D+     A   + +L               NN                 R
Sbjct: 272 VQLLGSD---DINVVTCAAGILSNL-------------TCNNYKNKMMVCQVGGIEALVR 315

Query: 354 ELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLR 413
            +     +  +      AL  L+             AE+ ++A           L  +++
Sbjct: 316 TVLRAGDREDITEPAICALRHLTSRH--------QEAEMAQNAV-----RLHYGLPVVVK 362

Query: 414 LIHEESDAMLQTPAIRSIGCLAKTFPAKEKRM-----IGPLVALLSNRNVDVATEAVIAL 468
           L+H  S   L    +  I  LA   PA    +     I  LV LL   + D      +  
Sbjct: 363 LLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 469 SKFVSPD----------------NFNRSEHSKAII-EFDGVPPLMRLLKI-SDRAQVHGL 510
           ++    +                   R  H++ +I   + +P  ++LL    +  Q    
Sbjct: 422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 481

Query: 511 VFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLT 561
             LC LA     ++A+E   A   L     +   ++  +    A  ++ ++
Sbjct: 482 GVLCELAQDKEAAEAIEAEGATAPLTELLHS---RNEGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 83.3 bits (206), Expect = 5e-17
 Identities = 53/401 (13%), Positives = 120/401 (29%), Gaps = 58/401 (14%)

Query: 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAA 226
            +  +          A   L +L       +  +   GG+  ++ LL +  +        
Sbjct: 106 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITT 164

Query: 227 NALFNIA-TDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFV 285
           + L  +A  +QE+   I+   G   +V+++     +  +   + V ++  + S  +   V
Sbjct: 165 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV 224

Query: 286 RENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHG 345
                ++L         L  P     +  + +L    + +++ +T               
Sbjct: 225 EAGGMQALGLH------LTDPSQRLVQNCLWTL----RNLSDAATKQEGMEGLLGTLVQL 274

Query: 346 QHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAK 405
                    L + ++   V    A  L  L+            N + +    +       
Sbjct: 275 ---------LGSDDI--NVVTCAAGILSNLTCN----------NYKNKMMVCQVG----- 308

Query: 406 AVLDQLLRLIHEESD-AMLQTPAIRSIGCLAKTFPAKEKRM--------IGPLVALLSNR 456
             ++ L+R +    D   +  PAI ++  L       E           +  +V LL   
Sbjct: 309 -GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 367

Query: 457 NVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD-RAQVHGLVFLCY 515
           +     +A + L + ++    N       + E   +P L++LL  +    Q    +    
Sbjct: 368 SHWPLIKATVGLIRNLALCPANH----APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423

Query: 516 LALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQA 556
                G            AL      +L +    R +    
Sbjct: 424 QQFVEGVRMEEIVEGCTGALH-----ILARDVHNRIVIRGL 459

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 49/358 (13%), Positives = 103/358 (28%), Gaps = 33/358 (9%)

Query: 171 IQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALF 230
           ++    +  +   + +  +    + N+  IVE GG+  L   L +  S          L 
Sbjct: 194 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD-PSQRLVQNCLWTLR 252

Query: 231 NIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVT 290
           N++              +  +V +LG   + V    A +++ +   +   +    +    
Sbjct: 253 NLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310

Query: 291 RSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNK 350
            +L+  +      +    E A   +  L   + +  E + N      G            
Sbjct: 311 EALVRTVLRAGDREDIT-EPAICALRHLT-SRHQEAEMAQNAVRLHYG----------LP 358

Query: 351 KDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNA------ELRRSAFKTNSPAA 404
              +L  P     +  A    +  L+          E  A       L R+   T    +
Sbjct: 359 VVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 418

Query: 405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSNRNVDV 460
                Q    +       +      ++  LA+    +        I   V LL +   ++
Sbjct: 419 MGGTQQQ--FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI 476

Query: 461 ATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD-RAQVHGLVFLCYLA 517
              A   L +          E ++AI       PL  LL   +     +    L  ++
Sbjct: 477 QRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 45/322 (13%), Positives = 90/322 (27%), Gaps = 65/322 (20%)

Query: 228 ALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRE 287
           A+ N+   Q+     +    +P +  +L +    V    A +V ++++ ++         
Sbjct: 1   AVVNLINYQDDA--ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58

Query: 288 NVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGG---- 343
            +  +++  +      D+        T+H+L          S +          GG    
Sbjct: 59  QMVSAIVRTMQNT--NDVETARCTAGTLHNL----------SHHREGLLAIFKSGGIPAL 106

Query: 344 ----HGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKT 399
                                   V       L  L           E      R A   
Sbjct: 107 VKMLGSPV--------------DSVLFYAITTLHNLLLH-------QEGAKMAVRLA--- 142

Query: 400 NSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRM-----IGPLVALLS 454
                   L +++ L+++ +           +  LA      +  +        LV ++ 
Sbjct: 143 ------GGLQKMVALLNKTNV-KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 455 NRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKI-SDRAQVHGLVFL 513
               +        + K +S  + N+     AI+E  G+  L   L   S R   + L  L
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNK----PAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251

Query: 514 CYLALSAGNSKALEQARALNAL 535
               LS   +K       L  L
Sbjct: 252 RN--LSDAATKQEGMEGLLGTL 271

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 88.1 bits (217), Expect = 2e-18
 Identities = 80/472 (16%), Positives = 148/472 (31%), Gaps = 65/472 (13%)

Query: 138 LLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNR 197
            L   DS       PP      +       I+ +       + +AA  L  L   N++ +
Sbjct: 28  SLASLDSLRKGGPPPPNWRQPEL----PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVK 83

Query: 198 KIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIA--TDQETVRFIVDVLGVPIIVSVL 255
             + +  GI  L+ LL      +    A  AL NI+   DQ+    I +  GVP +V +L
Sbjct: 84  TDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLL 142

Query: 256 GEAP-VKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTT 314
            +A  + +   +   +  ++  DS  + E V   +      ++      +    E  K  
Sbjct: 143 RKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201

Query: 315 IHSLVQMKKEMTEKSTNVTNNSD------GSSRGGHGQHYNKKDRELETPEVKAKVRIAC 368
                 +         NV++             G           E+   +  +K+   C
Sbjct: 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261

Query: 369 AEALWKLSKGCLLSLWSAESNAELRRSAFK---TNSPAAKAVLDQ------LLRLIHEES 419
              L  LS      +  AE   E   +      T+      +L Q       + L+ E  
Sbjct: 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK 321

Query: 420 DAMLQTPAIRSIGCLAKTFPAK---------EKRMIGPLVALLSNRNVDVATEAVIALSK 470
              +   +  +I  L                +++ +  +  LL+N +  V   A  AL  
Sbjct: 322 TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALR- 380

Query: 471 FVSPDNFNRSEHSKAIIEFDGVPPLMRLLK---------ISDRAQVHGLVFLCYLAL-SA 520
                N      +K +I    +P L++ L           S+   +  L  +  +   + 
Sbjct: 381 -----NLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL 435

Query: 521 GNSKALEQARALNALEG-------------AARTVL---PQHPELRDLFAQA 556
             +K L + + +  L               AA  VL     + ELR    + 
Sbjct: 436 EAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKE 487

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 86.6 bits (214), Expect = 4e-18
 Identities = 72/447 (16%), Positives = 154/447 (34%), Gaps = 57/447 (12%)

Query: 144 SDEVNLSLPPIASNDPILAW-VWSFISTIQMGQIKSRVDAANELASLA-RDNNRNRKIIV 201
           +D+ + ++  I SN   + W V   +  I    ++S++ A      L  R+       I+
Sbjct: 38  TDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNII 97

Query: 202 EEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPV 260
             G I   +  L +      Q  +A AL NIA+   E  + +VD   +P  +S+L     
Sbjct: 98  RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA 157

Query: 261 KVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQ 320
            +       +  +A   S  ++  ++      L++LL                 +  L  
Sbjct: 158 HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL----------------AVPDLST 201

Query: 321 MKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVK------AKVRIACAEALWK 374
           +        T   +N     R  +         ++    V+       +V      A+  
Sbjct: 202 LACGYLRNLTWTLSN---LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258

Query: 375 LSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCL 434
           L+ G            E+              V+ QL++L+   ++  + TPA+R+IG +
Sbjct: 259 LTDGP-------NERIEMVVKK---------GVVPQLVKLLG-ATELPIVTPALRAIGNI 301

Query: 435 AKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEF 489
                 +     +   +    +LL+N   ++  EA   +S   +     R +  + ++  
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA----GRQDQIQQVVNH 357

Query: 490 DGVPPLMRLLKISD-RAQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPE 548
             VP L+ +L  +D + Q      +     S G  + +        +E     +  +  +
Sbjct: 358 GLVPFLVGVLSKADFKTQKEAAWAITNYT-SGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416

Query: 549 LRDLFAQAIYHLTLYQAGSHPHRQTYA 575
           +  +   AI ++    A      +  +
Sbjct: 417 IIQVILDAISNI-FQAAEKLGETEKLS 442

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 65.4 bits (159), Expect = 2e-11
 Identities = 62/397 (15%), Positives = 127/397 (31%), Gaps = 46/397 (11%)

Query: 175 QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT 234
            + S     ++      D   N+        +  ++K +    + ++Q  A  A   + +
Sbjct: 30  HMDSPDLGTDDDDKAMADIGSNQ--GTVNWSVEDIVKGINSN-NLESQLQATQAARKLLS 86

Query: 235 --DQETVRFIVDVLGVPIIVSVLG-EAPVKVQVAVANLVARMAELDSIAQEEFVRENVTR 291
              Q  +  I+    +P  VS LG      +Q   A  +  +A   S   +  V      
Sbjct: 87  REKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIP 146

Query: 292 SLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKK 351
           + ISLL        P    ++  + +L  +  + +     V  +      G         
Sbjct: 147 AFISLLA------SPHAHISEQAVWALGNIAGDGSAFRDLVIKH------GAIDPLLAL- 193

Query: 352 DRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQL 411
              L  P++            W LS  C             R         A + +L  L
Sbjct: 194 ---LAVPDLSTLACGYLRNLTWTLSNLC-------------RNKNPAPPLDAVEQILPTL 237

Query: 412 LRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRM-----IGPLVALLSNRNVDVATEAVI 466
           +RL+H   D  +   +  +I  L      + + +     +  LV LL    + + T A+ 
Sbjct: 238 VRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296

Query: 467 ALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKAL 526
           A+   V+  +    E ++ +I+   +     LL  + +  +          ++AG    +
Sbjct: 297 AIGNIVTGTD----EQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQI 351

Query: 527 EQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLY 563
           +Q      +      +     + +   A AI + T  
Sbjct: 352 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 54.6 bits (131), Expect = 5e-08
 Identities = 59/351 (16%), Positives = 113/351 (32%), Gaps = 56/351 (15%)

Query: 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLK----EAASPDAQ 222
           FIS +          A   L ++A D +  R ++++ G I PLL LL        +    
Sbjct: 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207

Query: 223 TAAANALFNIA-TDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQ 281
                 L N+                +P +V +L     +V       ++ + +  +   
Sbjct: 208 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI 267

Query: 282 EEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSR 341
           E  V++ V   L+ LL      +LP    A   I ++V    E T+K  +          
Sbjct: 268 EMVVKKGVVPQLVKLLGAT---ELPIVTPALRAIGNIVTGTDEQTQKVID---------A 315

Query: 342 GGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS 401
           G      +     L  P  K  ++      +  ++ G                       
Sbjct: 316 GALAVFPS----LLTNP--KTNIQKEATWTMSNITAG---------------------RQ 348

Query: 402 PAAKAVLDQ----LLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKR------MIGPLVA 451
              + V++      L  +  ++D   Q  A  +I         ++        +I PL+ 
Sbjct: 349 DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 408

Query: 452 LLSNRNVDVATEAVIALSKF--VSPDNFNRSEHSKAIIEFDGVPPLMRLLK 500
           LLS ++  +    + A+S     +       + S  I E  G+  +  L +
Sbjct: 409 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 459

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 38/257 (14%), Positives = 86/257 (33%), Gaps = 35/257 (13%)

Query: 320 QMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKA------KVRIACAEALW 373
              +     S ++  + D  +    G +    +  +E   VK       + ++   +A  
Sbjct: 24  AKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVE-DIVKGINSNNLESQLQATQAAR 82

Query: 374 KLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGC 433
           KL     LS         + R+           ++ + +  + +   + +Q  +  ++  
Sbjct: 83  KL-----LSREKQPPIDNIIRAG----------LIPKFVSFLGKTDCSPIQFESAWALTN 127

Query: 434 LAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIE 488
           +A     +     +   I   ++LL++ +  ++ +AV AL         + S     +I+
Sbjct: 128 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG----DGSAFRDLVIK 183

Query: 489 FDGVPPLMRLLKISDRAQ----VHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLP 544
              + PL+ LL + D +         +      L    + A         L    R +  
Sbjct: 184 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH 243

Query: 545 QHPELRDLFAQAIYHLT 561
             PE+      AI +LT
Sbjct: 244 NDPEVLADSCWAISYLT 260

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 84.6 bits (209), Expect = 1e-17
 Identities = 61/411 (14%), Positives = 137/411 (33%), Gaps = 66/411 (16%)

Query: 168 ISTIQMGQIKSRVDAANELASLAR--DNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAA 225
           I  I     + ++ A  +   L     N    ++I   G +   ++ LK   +   Q  +
Sbjct: 26  IEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFES 85

Query: 226 ANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEF 284
           A  L NIA+ +    R ++    VPI + +L      VQ      +  +A   ++ ++  
Sbjct: 86  AWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYV 145

Query: 285 VRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGH 344
           +  N+   L+ L      L +    +A   + +L + K                      
Sbjct: 146 LDCNILPPLLQLFSKQNRLTM--TRNAVWALSNLCRGKS--------------------- 182

Query: 345 GQHYNKKDRELETPEVKA----------KVRIACAEALWKLSKGCLLSLWSAESNAELRR 394
                  +    +P +             V      AL  LS G            +   
Sbjct: 183 ----PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP-------NDKIQAVI 231

Query: 395 SAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPL 449
            A          V  +L+ L+   +D  + +PA+R++G +      +         +  L
Sbjct: 232 DA---------GVCRRLVELLM-HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSL 281

Query: 450 VALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHG 509
           + LLS+    +  EA   +S   +          + +I+ +  P L+ +L+ ++      
Sbjct: 282 LHLLSSPKESIKKEACWTISNITA----GNRAQIQTVIDANIFPALISILQTAEFRTRKE 337

Query: 510 LVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHL 560
             +    A S G+++ ++    L  ++     +     ++  +    + ++
Sbjct: 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 1/135 (0%)

Query: 164 VWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQT 223
           V  FI  +       +  A   L ++A D+   R  +++   + PLL+L  +        
Sbjct: 109 VPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTR 168

Query: 224 AAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQE 282
            A  AL N+         F      + ++  +L  +   V       ++ +++  +   +
Sbjct: 169 NAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQ 228

Query: 283 EFVRENVTRSLISLL 297
             +   V R L+ LL
Sbjct: 229 AVIDAGVCRRLVELL 243

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 7/162 (4%)

Query: 137 WLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRN 196
           W L+     +     P  A   P L         + +       DA   L+ L+   N  
Sbjct: 172 WALSNLCRGKSPP--PEFAKVSPCLN---VLSWLLFVSDTDVLADACWALSYLSDGPNDK 226

Query: 197 RKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVL 255
            + +++ G    L++LL         + A  A+ NI T D    + I++   +  ++ +L
Sbjct: 227 IQAVIDAGVCRRLVELLMH-NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL 285

Query: 256 GEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297
                 ++      ++ +   +    +  +  N+  +LIS+L
Sbjct: 286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL 327

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 31/204 (15%), Positives = 72/204 (35%), Gaps = 23/204 (11%)

Query: 363 KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAM 422
           + +++  +   KL         S E N  +              V+ + +  +  + +  
Sbjct: 35  EQQLSATQKFRKLL--------SKEPNPPIDEVISTPG------VVARFVEFLKRKENCT 80

Query: 423 LQTPAIRSIGCLAKTFPAKEKRM-----IGPLVALLSNRNVDVATEAVIALSKFVSPDNF 477
           LQ  +   +  +A     + + +     +   + LLS+   DV  +AV AL         
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG---- 136

Query: 478 NRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEG 537
           + +     +++ + +PPL++L    +R  +          L  G S   E A+    L  
Sbjct: 137 DSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNV 196

Query: 538 AARTVLPQHPELRDLFAQAIYHLT 561
            +  +     ++      A+ +L+
Sbjct: 197 LSWLLFVSDTDVLADACWALSYLS 220

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 20/132 (15%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAA 225
           S +  +   +   + +A   ++++   N    + +++      L+ +L+ A     +  A
Sbjct: 280 SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEA 338

Query: 226 ANALFNIAT--DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAEL-DSIAQE 282
           A A+ N  +    E ++++V++  +  +  +L     K+     N +  +  L +  A+ 
Sbjct: 339 AWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR 398

Query: 283 EFVRENVTRSLI 294
                N   +LI
Sbjct: 399 NGTGINPYCALI 410

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 75.8 bits (186), Expect = 1e-14
 Identities = 59/370 (15%), Positives = 146/370 (39%), Gaps = 47/370 (12%)

Query: 168 ISTIQMGQIKSRVDAANELASLA-RDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAA 226
              +    ++ ++ A  +   +  R++     ++++ G +  L++ ++E      Q  AA
Sbjct: 93  TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAA 152

Query: 227 NALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFV 285
            AL NIA+      + +VD   VP+ + +L    V+V+      +  +A   +  ++  +
Sbjct: 153 WALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVL 212

Query: 286 RENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHG 345
           + N    ++ L       +  KP   +T   +L  +                   RG   
Sbjct: 213 QCNAMEPILGL------FNSNKPSLIRTATWTLSNL------------------CRGKK- 247

Query: 346 QHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAK 405
               + D  + +  +    ++  +     L   C    + ++   E  ++          
Sbjct: 248 ---PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR----- 299

Query: 406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMI-----GPLVALLSNRNVDV 460
            +  +L+ L+  ES  ++QTPA+R++G +      + + +I       L  LLS+   ++
Sbjct: 300 -IPKRLVELLSHEST-LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI 357

Query: 461 ATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD-RAQVHGLVFLCYLALS 519
             EA   +S   +      +E  +A+I+ + +PPL++LL++++ + +      +   +  
Sbjct: 358 KKEACWTISNITA----GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413

Query: 520 AGNSKALEQA 529
                 + + 
Sbjct: 414 GLQRPDIIRY 423

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 68.9 bits (168), Expect = 2e-12
 Identities = 60/365 (16%), Positives = 114/365 (31%), Gaps = 58/365 (15%)

Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238
           +++AA  L ++A   +   K++V+   +   ++LL    S + +  A  AL N+A D   
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTD 206

Query: 239 VR-FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297
            R +++    +  I+ +       +       ++ +        +  V      +L  L+
Sbjct: 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266

Query: 298 CMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTN-------VTNNSDGSSRGGHGQHYNK 350
                 D      A   I  L    +E  +   +       V   S  S+          
Sbjct: 267 YSM---DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST---------- 313

Query: 351 KDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQ 410
                        V+     A+  +  G          N    +            VL  
Sbjct: 314 ------------LVQTPALRAVGNIVTG----------NDLQTQVVINAG------VLPA 345

Query: 411 LLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRM-----IGPLVALLSNRNVDVATEAV 465
           L  L+    +  ++  A  +I  +      + + +     I PLV LL         EA 
Sbjct: 346 LRLLLSSPKEN-IKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404

Query: 466 IALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD-RAQVHGLVFLCYLALSAGNSK 524
            A+S   S     R +  + ++    + PL  LL+I+D R     L  L  +       K
Sbjct: 405 WAISNASSGGL-QRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 463

Query: 525 ALEQA 529
                
Sbjct: 464 EARGL 468

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 52/349 (14%), Positives = 114/349 (32%), Gaps = 52/349 (14%)

Query: 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAA 226
           FI  +  G ++ +  A   L ++A D+   R  +++   + P+L L      P     A 
Sbjct: 178 FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTAT 236

Query: 227 NALFNIATD-QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFV 285
             L N+    +    + V    +P +  ++     +  V     ++ +++    A +  +
Sbjct: 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 296

Query: 286 RENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHG 345
              + + L+ LL  +          A   + ++V      T+   N              
Sbjct: 297 DVRIPKRLVELLSHE---STLVQTPALRAVGNIVTGNDLQTQVVIN-------------A 340

Query: 346 QHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAK 405
                    L +P+   K      EA W +S            N E  ++    N     
Sbjct: 341 GVLPALRLLLSSPKENIK-----KEACWTIS-------NITAGNTEQIQAVIDAN----- 383

Query: 406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRM--------IGPLVALLSNRN 457
            ++  L++L+ E ++   +  A  +I   +     +   +        I PL  LL   +
Sbjct: 384 -LIPPLVKLL-EVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD 441

Query: 458 VDVATEAVIALSKFVS-------PDNFNRSEHSKAIIEFDGVPPLMRLL 499
             +    + AL   +            N +E++  I +  G+  +    
Sbjct: 442 NRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ 490

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 50.8 bits (121), Expect = 8e-07
 Identities = 48/312 (15%), Positives = 94/312 (30%), Gaps = 50/312 (16%)

Query: 182 AANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIA-TDQETVR 240
           A   L++L R         V    +  L KL+      +    A  A+  ++   QE ++
Sbjct: 235 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-MDTETLVDACWAISYLSDGPQEAIQ 293

Query: 241 FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMD 300
            ++DV     +V +L      VQ      V  +   + +  +  +   V  +L  LL   
Sbjct: 294 AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS- 352

Query: 301 IALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEV 360
                PK    K    ++  +    TE+   V + +                + LE  E 
Sbjct: 353 -----PKENIKKEACWTISNITAGNTEQIQAVIDANL----------IPPLVKLLEVAEY 397

Query: 361 KAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESD 420
           K K      EA W +S      L   +    L               +  L  L+   +D
Sbjct: 398 KTK-----KEACWAISNASSGGLQRPDIIRYLVSQ----------GCIKPLCDLLE-IAD 441

Query: 421 AMLQTPAIRSIGCLAKTFPAKEKRM----------------IGPLVALLSNRNVDVATEA 464
             +    + ++  + K   A ++                  +  +     N N  +  +A
Sbjct: 442 NRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKA 501

Query: 465 VIALSKFVSPDN 476
              +  +   + 
Sbjct: 502 YKIIETYFGEEE 513

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 39/230 (16%), Positives = 81/230 (35%), Gaps = 39/230 (16%)

Query: 364 VRIACAEALWKLSKGC---------------LLSLWSAESNAELRRSAF--------KTN 400
           V+     AL  ++                  +L L+++   + +R + +        K  
Sbjct: 189 VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 248

Query: 401 SPAAKAV---LDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVAL 452
            P    V   L  L +LI+   D      A  +I  L+           + R+   LV L
Sbjct: 249 QPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL 307

Query: 453 LSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRA-QVHGLV 511
           LS+ +  V T A+ A+   V+ ++      ++ +I    +P L  LL       +     
Sbjct: 308 LSHESTLVQTPALRAVGNIVTGND----LQTQVVINAGVLPALRLLLSSPKENIKKEACW 363

Query: 512 FLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLT 561
            +  +   AGN++ ++     N +    + +     + +     AI + +
Sbjct: 364 TISNIT--AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 411

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 71.0 bits (173), Expect = 3e-13
 Identities = 57/419 (13%), Positives = 125/419 (29%), Gaps = 19/419 (4%)

Query: 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAA 226
            +  +     K +   A  +      +   ++ + + GGI  L+ LL+   + + Q AAA
Sbjct: 7   AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAA 65

Query: 227 NALFNIATDQETVRFIVDVLG-VPIIVSVLGEAP-VKVQVAVANLVARMAELDSIAQEEF 284
            AL N+     T +        +   VS+L      ++Q  +  L+  ++  D + +EE 
Sbjct: 66  GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEEL 124

Query: 285 VRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDG-----S 339
           + + +      ++             ++  +   V      T    N+++   G     +
Sbjct: 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF--FNATGCLRNLSSADAGRQTMRN 182

Query: 340 SRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKT 399
             G            +       K    C   L  LS      + +     E       T
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 400 NSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVD 459
              +     ++  ++++   D  L        G             I   + L+     D
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS----GWLYHSDAIRTYLNLMGKSKKD 298

Query: 460 VATEAVIALSKFVSPDNFNRSE--HSKAIIEFDGVPPLMRLLKISD-RAQVHGLVFLCYL 516
              EA     + ++      S        ++  G+P + RLL+  +      G   L  +
Sbjct: 299 ATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358

Query: 517 ALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAGSHPHRQTYA 575
           +        +   +    +     +         D+ + A Y +    A      + Y 
Sbjct: 359 SRHPLL-HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYF 416

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 65.6 bits (159), Expect = 2e-11
 Identities = 61/426 (14%), Positives = 124/426 (29%), Gaps = 56/426 (13%)

Query: 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAA 226
            +  ++      +  AA  L +L   +  N+     + GI   + LL+   + + Q    
Sbjct: 49  LVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLT 108

Query: 227 NALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVR 286
             L+N+++  E    ++    +P++         +V +  +      + +     +  V 
Sbjct: 109 GLLWNLSSTDELKEELIAD-ALPVLAD-------RVIIPFSGWCDGNSNMSREVVDPEVF 160

Query: 287 ENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTN----VTNN--SDGSS 340
            N T  L +L   D      +  S    I SL+   +     S      V N      + 
Sbjct: 161 FNATGCLRNLSSADAGRQTMRNYSG--LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218

Query: 341 RGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTN 400
                     + R+LE     A    +        S   + + +      E   +   + 
Sbjct: 219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDC-PLPEEETNPKGSG 277

Query: 401 SPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAK----------TFPAKEKRMIGPLV 450
                  +   L L+ +            ++  L                 +++ +  + 
Sbjct: 278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIA 337

Query: 451 ALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLL-------KISD 503
            LL + N DV       LS      N +R      ++     P + RLL         S+
Sbjct: 338 RLLQSGNSDVVRSGASLLS------NMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSE 391

Query: 504 RAQVHGLVFLCYLAL-SAGNSKALEQARALNALEG------------AARTVLP---QHP 547
                    +  L       +K    +  LN +              AAR +L       
Sbjct: 392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451

Query: 548 ELRDLF 553
           EL+ + 
Sbjct: 452 ELQGVL 457

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.7 bits (172), Expect = 8e-13
 Identities = 72/539 (13%), Positives = 146/539 (27%), Gaps = 151/539 (28%)

Query: 88  DVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIFDSDE- 146
               N D        CK   V     SI +  +   +    + ++     L     S + 
Sbjct: 28  AFVDNFD--------CKD--VQDMPKSILSKEEIDHIIMS-KDAVSGTLRLFWTLLSKQE 76

Query: 147 ------VNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKII 200
                 V   L           ++ S I T Q            +   L  DN    K  
Sbjct: 77  EMVQKFVEEVL------RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 201 VEEGGILPLLKLLKEA---ASPDA------------QTAAANALFNIATDQETVRFIVDV 245
           V     L     L++A     P                 A +   +          +   
Sbjct: 131 VS---RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK--------VQCK 179

Query: 246 LGVPII-VSVLGE--APVKVQVAVANLVARM-----AELDSIAQEEFVRENVT---RSLI 294
           +   I  +++     +P  V   +  L+ ++     +  D  +  +    ++    R L+
Sbjct: 180 MDFKIFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 295 -------SLLCMDIALDLPKPESAKT-TIHS--LVQMKKEMTEKSTNVTNNSDGSSRGGH 344
                   LL +    ++   ++     +    L+      T +   VT+    ++    
Sbjct: 239 KSKPYENCLLVLL---NVQNAKAWNAFNLSCKILL------TTRFKQVTDFLSAATT--- 286

Query: 345 GQHYNKKDRE--LETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP 402
             H +       L   EVK+                 LL  +      +L R    TN P
Sbjct: 287 -THISLDHHSMTLTPDEVKS-----------------LLLKYLDCRPQDLPREVLTTN-P 327

Query: 403 AAKAVLDQLLR--------LIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLS 454
              +++ + +R          H   D +     I S   L    PA+ ++M   L     
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTI--IES--SLNVLEPAEYRKMFDRLSVF-- 381

Query: 455 NRNVDVATEAVIAL----SKFVSPDNFNRSEHSKAIIEFDGVPPLMRL--------LKIS 502
             +  +    +++L                 H  +++E       + +        +K+ 
Sbjct: 382 PPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 503 DRAQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAI-YHL 560
           +   +H                 ++        +     ++P  P L   F   I +HL
Sbjct: 441 NEYALH--------------RSIVDHYNIPKTFDS--DDLIP--PYLDQYFYSHIGHHL 481

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 66.6 bits (162), Expect = 3e-12
 Identities = 23/150 (15%), Positives = 60/150 (40%), Gaps = 4/150 (2%)

Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QE 237
           R  AA  + + +++    ++ ++  G +  LL+LL   A    +  A  A+  +  + + 
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158

Query: 238 TVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297
            +   + + G  +++  + +   K++V  A L+  +       +       + + L++L+
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALV 218

Query: 298 CMDIALDLPKPESAKTTIHSLVQMKKEMTE 327
             +     P  E     + SLV    +   
Sbjct: 219 RTE---HSPFHEHVLGALCSLVTDFPQGVR 245

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 23/177 (12%), Positives = 61/177 (34%), Gaps = 26/177 (14%)

Query: 362 AKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDA 421
           A +R   A+ +             +++ A ++              L +LLRL+  ++  
Sbjct: 96  AGLRWRAAQLIGTC----------SQNVAAIQEQVLGLG------ALRKLLRLLDRDACD 139

Query: 422 MLQTPAIRSIGCLAKTFPAKEKRM-----IGPLVALLSNRNVDVATEAVIALSKFVSPDN 476
            ++  A+ +I CL +   A   +         L+  +  +   +  ++   L   +    
Sbjct: 140 TVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP 199

Query: 477 FNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARALN 533
            ++      +     V  L+ L++ ++ +  H  V     +L     + + + R   
Sbjct: 200 EHK----GTLCSMGMVQQLVALVR-TEHSPFHEHVLGALCSLVTDFPQGVRECREPE 251

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 3/121 (2%)

Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238
           R  A   LA L  +N  N     +  G+  L+    EA +   +  AA  +   + +   
Sbjct: 57  REGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA 115

Query: 239 VRFIVDVLGV--PIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISL 296
           ++  V  LG    ++  +  +A   V+V     ++ +         +F+R +    L+  
Sbjct: 116 IQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRA 175

Query: 297 L 297
           +
Sbjct: 176 M 176

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 43.9 bits (103), Expect = 8e-05
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAAN 227
           +  +Q    K +V +A  L +L   +  ++  +   G +  L+ L++             
Sbjct: 173 MRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT-EHSPFHEHVLG 231

Query: 228 ALFNIATD 235
           AL ++ TD
Sbjct: 232 ALCSLVTD 239

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 63.8 bits (156), Expect = 8e-12
 Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 171 IQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALF 230
           +     +    A  +L+ +A   N   + +++ G +  L++LL    +      A  AL 
Sbjct: 21  LNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALS 79

Query: 231 NIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENV 289
           NIA+   E ++ ++D   +P +V +L     ++       ++ +A   +   +  +    
Sbjct: 80  NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139

Query: 290 TRSLISLL 297
             +L+ LL
Sbjct: 140 LPALVQLL 147

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 57.6 bits (140), Expect = 9e-10
 Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 2/117 (1%)

Query: 182 AANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVR 240
           A   L+++A   N   + +++ G +  L++LL    +      A  AL NIA+   E ++
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 132

Query: 241 FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297
            ++D   +P +V +L     ++       ++ +A   +  ++          L  L 
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 39/206 (18%), Positives = 82/206 (39%), Gaps = 31/206 (15%)

Query: 363 KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAM 422
           +   +    L +++ G            E  ++            L  L++L+    +  
Sbjct: 27  QELQSALRKLSQIASG----------GNEQIQAVIDAG------ALPALVQLL-SSPNEQ 69

Query: 423 LQTPAIRSIGCLAKTFPAKEKRM-----IGPLVALLSNRNVDVATEAVIALSKFVSPDNF 477
           +   A+ ++  +A     + + +     +  LV LLS+ N  +  EA+ ALS   S    
Sbjct: 70  ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS---- 125

Query: 478 NRSEHSKAIIEFDGVPPLMRLLKISD-RAQVHGLVFLCYLALSAGNSK-ALEQARALNAL 535
             +E  +A+I+   +P L++LL   + +     L  L  +A      K A+++A AL  L
Sbjct: 126 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185

Query: 536 EGAARTVLPQHPELRDLFAQAIYHLT 561
           E        ++ +++    +A+  L 
Sbjct: 186 EQLQSH---ENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 2/109 (1%)

Query: 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAA 226
            +  +     +   +A   L+++A   N   + +++ G +  L++LL    +      A 
Sbjct: 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEAL 159

Query: 227 NALFNIATDQ-ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMA 274
            AL NIA+   E  + + +   +  +  +      K+Q      + ++ 
Sbjct: 160 WALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 10/103 (9%)

Query: 406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRM-----IGPLVALLSNRNVDV 460
           + L Q+++ ++          A+R +  +A     + + +     +  LV LLS+ N  +
Sbjct: 12  SELPQMVQQLNSPDQQ-ELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70

Query: 461 ATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD 503
             EA+ ALS   S      +E  +A+I+   +P L++LL   +
Sbjct: 71  LQEALWALSNIAS----GGNEQIQAVIDAGALPALVQLLSSPN 109

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAA 226
            +  +     +   +A   L+++A   N  ++ + E G +  L +L     +   Q  A 
Sbjct: 143 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQ 201

Query: 227 NALFNIAT 234
            AL  + +
Sbjct: 202 EALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 2/103 (1%)

Query: 196 NRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSV 254
           +         +  +++ L          +A   L  IA+   E ++ ++D   +P +V +
Sbjct: 4   SHHHHHHGSELPQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62

Query: 255 LGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297
           L     ++       ++ +A   +   +  +      +L+ LL
Sbjct: 63  LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 105

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 448 PLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD-RAQ 506
            +V  L++ +      A+  LS+  S      +E  +A+I+   +P L++LL   + +  
Sbjct: 16  QMVQQLNSPDQQELQSALRKLSQIAS----GGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 507 VHGLVFLCYLAL-SAGNSKALEQARALNAL 535
              L  L  +A       +A+  A AL AL
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPAL 101

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 66.4 bits (161), Expect = 1e-11
 Identities = 49/320 (15%), Positives = 99/320 (30%), Gaps = 46/320 (14%)

Query: 192 DNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPII 251
           D    R  ++   GI   L  L +  S ++Q   A  L  +   +E    +V   GV  +
Sbjct: 482 DFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKAL 541

Query: 252 VSVLGEAPVKVQVAVANLVARMA--ELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPE 309
           + +  E   K +      +AR+       ++       +V R L++LL  D         
Sbjct: 542 LRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD--------- 592

Query: 310 SAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACA 369
                         E     TN+ + ++   +    +    K       E    +  A A
Sbjct: 593 -------CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM-EDHLYLTRAAA 644

Query: 370 EALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIR 429
           + L  L             + ++ +             +  L  L  +E D    T    
Sbjct: 645 QCLCNLV-----------MSEDVIKMFE-----GNNDRVKFLALLCEDE-DEETATACAG 687

Query: 430 SIGCLAKTFPA------KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHS 483
           ++  +                 +  L  L++N +  V    ++ +   ++       E +
Sbjct: 688 ALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGE----EIA 743

Query: 484 KAIIEFDGVPPLMRLLKISD 503
           K + E D +  L  L ++ D
Sbjct: 744 KKLFETDIMELLSGLGQLPD 763

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 60/394 (15%), Positives = 123/394 (31%), Gaps = 33/394 (8%)

Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238
           R  AAN L  LA++     +++ ++  I  +  L K     D      + +  +  +   
Sbjct: 25  RRAAANNLVVLAKEQT-GAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVE 83

Query: 239 -VRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297
             + ++  LGVP  + VL +            +  +  L++++  +   ++         
Sbjct: 84  RTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTI--LNALSGLKNKPDSK-------- 133

Query: 298 CMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELET 357
             D  L         T +  LV    + T          +  +R  H       +R +E 
Sbjct: 134 -PDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEI 192

Query: 358 PEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAF--KTNSPAAKAVLDQLLRLI 415
             +   + +      +K      ++  S+   +      +       A     DQ+   I
Sbjct: 193 RGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYI 252

Query: 416 HEESDAMLQTPAIRSIGCLAKTFPA---------KEKRMIGPLVALLSNRNVDVATEAVI 466
            ++  A      +R    +                 + ++  ++A+ +  +      A  
Sbjct: 253 KDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACE 312

Query: 467 ALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRA-QVHGLVFLCYLALSAGNSKA 525
            L    S       +     +   GV  L RL    +   +V  LV LC L    G   A
Sbjct: 313 CLIAASS------KKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAA 366

Query: 526 LEQAR--ALNALEGAARTVLPQHPELRDLFAQAI 557
           +      A   L  A R  L +  + +D+   A 
Sbjct: 367 IRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAA 400

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 48.7 bits (115), Expect = 5e-06
 Identities = 22/162 (13%), Positives = 48/162 (29%), Gaps = 3/162 (1%)

Query: 163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQ 222
            V      +    +     AA  L +L    +  +        +  L  L  E    +  
Sbjct: 624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLC-EDEDEETA 682

Query: 223 TAAANALFNIATDQETVRFIVDVL--GVPIIVSVLGEAPVKVQVAVANLVARMAELDSIA 280
           TA A AL  I +        +  +   + I+ +++      VQ     ++  M       
Sbjct: 683 TACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI 742

Query: 281 QEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK 322
            ++    ++   L  L  +         E A   + +  + +
Sbjct: 743 AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 48.3 bits (114), Expect = 7e-06
 Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 2/123 (1%)

Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238
             ++   L +LA  N   R+ I++E G+  +   L E        AAA  L N+   ++ 
Sbjct: 598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME-DHLYLTRAAAQCLCNLVMSEDV 656

Query: 239 VRFIVDVLG-VPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297
           ++        V  +  +  +   +   A A  +A +  +     E+ +       ++  L
Sbjct: 657 IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716

Query: 298 CMD 300
             +
Sbjct: 717 IAN 719

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 3/133 (2%)

Query: 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKI--IVEEGGILPLLKLLKEAASPDAQTAA 225
           +     G  K +  A   LA +    N             I PLL LL++  +      +
Sbjct: 542 LRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFES 601

Query: 226 ANALFNIATDQETVR-FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEF 284
             AL N+A+  E+VR  I+   GV  I   L E  + +  A A  +  +   + + +   
Sbjct: 602 LMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFE 661

Query: 285 VRENVTRSLISLL 297
              +  + L  L 
Sbjct: 662 GNNDRVKFLALLC 674

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 41.4 bits (96), Expect = 9e-04
 Identities = 17/114 (14%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 176 IKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD 235
            ++    A  LA +   + +  + I+     L +L  L    SP  Q      + N+   
Sbjct: 679 EETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738

Query: 236 QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENV 289
            E +   +    +  ++S LG+ P   +     +  +   L +  +   +  + 
Sbjct: 739 GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQC--LAAAERYRIIERSD 790

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 22/133 (16%), Positives = 54/133 (40%), Gaps = 2/133 (1%)

Query: 166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAA 225
           + +  +     +   +A   L+++A   N   + +++ G +  L++LL    +      A
Sbjct: 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEA 158

Query: 226 ANALFNIATDQ-ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEF 284
             AL NIA+   E ++ ++D   +P +V +L     ++       ++ +A   +  ++  
Sbjct: 159 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 218

Query: 285 VRENVTRSLISLL 297
                   L  L 
Sbjct: 219 KEAGALEKLEQLQ 231

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 21/128 (16%), Positives = 55/128 (42%), Gaps = 2/128 (1%)

Query: 171 IQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALF 230
           +    ++ ++ A  + + +  D N   + +++ G +  L++LL    +      A  AL 
Sbjct: 21  LNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALS 79

Query: 231 NIATDQET-VRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENV 289
           NIA+     ++ ++D   +P +V +L     ++       ++ +A   +   +  +    
Sbjct: 80  NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139

Query: 290 TRSLISLL 297
             +L+ LL
Sbjct: 140 LPALVQLL 147

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 17/108 (15%), Positives = 43/108 (39%), Gaps = 2/108 (1%)

Query: 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAAN 227
           +  +     +   +A   L+++A   N   + +++ G +  L++LL    +      A  
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALW 202

Query: 228 ALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMA 274
           AL NIA+   E  + + +   +  +  +      K+Q      + ++ 
Sbjct: 203 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT 234
             +A   L+++A   N  ++ + E G +  L +L     +   Q  A  AL  + +
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ-SHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 33/180 (18%), Positives = 71/180 (39%), Gaps = 28/180 (15%)

Query: 363 KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAM 422
           + +++      ++               E  ++            L  L++L+    +  
Sbjct: 27  QEQLSATRKFSQILSD----------GNEQIQAVIDAG------ALPALVQLL-SSPNEQ 69

Query: 423 LQTPAIRSIGCLAKTFPAKEKRM-----IGPLVALLSNRNVDVATEAVIALSKFVSPDNF 477
           +   A+ ++  +A     + + +     +  LV LLS+ N  +  EA+ ALS  ++    
Sbjct: 70  ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN-IASGG- 127

Query: 478 NRSEHSKAIIEFDGVPPLMRLLKISD-RAQVHGLVFLCYLAL-SAGNSKALEQARALNAL 535
             +E  +A+I+   +P L++LL   + +     L  L  +A       +A+  A AL AL
Sbjct: 128 --NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 185

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 446 IGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD-R 504
           +  +   L++ ++     A    S+ +S    + +E  +A+I+   +P L++LL   + +
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS----DGNEQIQAVIDAGALPALVQLLSSPNEQ 69

Query: 505 AQVHGLVFLCYLAL-SAGNSKALEQARALNAL 535
                L  L  +A       +A+  A AL AL
Sbjct: 70  ILQEALWALSNIASGGNEQIQAVIDAGALPAL 101

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 26/145 (17%)

Query: 361 KAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESD 420
             ++      AL  ++ G            E  ++            L  L++L+   ++
Sbjct: 109 NEQILQEALWALSNIASG----------GNEQIQAVIDAG------ALPALVQLLSSPNE 152

Query: 421 AMLQTPAIRSIGCLAKTFPAKEKRM-----IGPLVALLSNRNVDVATEAVIALSKFVSPD 475
            +LQ  A+ ++  +A     + + +     +  LV LLS+ N  +  EA+ ALS   S  
Sbjct: 153 QILQE-ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 211

Query: 476 NFNRSEHSKAIIEFDGVPPLMRLLK 500
           N    E  +A+ E   +  L +L  
Sbjct: 212 N----EQKQAVKEAGALEKLEQLQS 232

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 49/364 (13%), Positives = 113/364 (31%), Gaps = 51/364 (14%)

Query: 193 NNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIV 252
                     E G+      +  A        A   L  ++ D+E    + ++ G+  I 
Sbjct: 21  ETCWEWQEAHEPGMDQDKNPMP-APVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIA 79

Query: 253 SVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPE--S 310
            +L        +   +                +R     +L +L   D      K    S
Sbjct: 80  ELLQVDCEMYGLTNDHYSIT------------LRRYAGMALTNLTFGD---VANKATLCS 124

Query: 311 AKTTIHSLVQM----KKEMTEKST----NVTNNSDGSSRGGHGQHYNKKDRELETPEVKA 362
            K  + +LV       +++ +       N++  +D +S+              E   VKA
Sbjct: 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSK----------KTLREVGSVKA 174

Query: 363 KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAM 422
            +  A         K  L +LW+  ++    ++       A   ++  L       + A+
Sbjct: 175 LMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAI 234

Query: 423 LQ--TPAIRSIGCLAKTFPAKEKRM-----IGPLVALLSNRNVDVATEAVIALSKFVSPD 475
           ++     +R++  L  T     + +     +  L+  L + ++ + + A   L    + +
Sbjct: 235 IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 294

Query: 476 NFNRSEHSKAIIEFDGVPPLMRLLKI-SDRAQVHGLVFLCYLALSAGNSKALEQARALNA 534
             ++    +A+ +   V  L  L+        +     L  L     N  A  +   + +
Sbjct: 295 PKDQ----EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA---NRPAKYKDANIMS 347

Query: 535 LEGA 538
              +
Sbjct: 348 PGSS 351

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 4/120 (3%)

Query: 182 AANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIA--TDQETV 239
           A   L +L   +  N+  +    G +  L    ++ S D Q   A+ L N++   D  + 
Sbjct: 104 AGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSK 163

Query: 240 RFIVDVLGVPIIVSVLGEAP-VKVQVAVANLVARMAELDSIAQEEFVREN-VTRSLISLL 297
           + + +V  V  ++    E        +V + +  ++   +  + +    +     L+  L
Sbjct: 164 KTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL 223

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 24/142 (16%), Positives = 57/142 (40%), Gaps = 12/142 (8%)

Query: 167 FISTIQMGQIKSRVDAANELASLA-RDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAA 225
            ++ ++      +   A+ L +L+ R +  ++K + E G +  L++   E        + 
Sbjct: 132 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 191

Query: 226 ANALFNIATD-QETVRFIVDVLG-VPIIVSVLGEAPVKVQVAV--------ANLVARMAE 275
            +AL+N++    E    I  V G +  +V  L        +A+         N+ + +A 
Sbjct: 192 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 251

Query: 276 LDSIAQEEFVRENVTRSLISLL 297
            +   ++     N  ++L+  L
Sbjct: 252 -NEDHRQILRENNCLQTLLQHL 272

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 21/144 (14%), Positives = 59/144 (40%), Gaps = 7/144 (4%)

Query: 103 CKHAGVLRHVFSITTNADFKKVFSLLESSIGDMRWLLTIFDSDEVNLSLPPIASNDPILA 162
           C   G L  +    T        +++ES  G +R + ++  ++E +  +  +  N+ +  
Sbjct: 210 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI--LRENNCLQT 267

Query: 163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQ 222
                +  ++   +    +A   L +L+  N ++++ + + G +  L  L+  +      
Sbjct: 268 ----LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH-SKHKMIA 322

Query: 223 TAAANALFNIATDQETVRFIVDVL 246
             +A AL N+  ++       +++
Sbjct: 323 MGSAAALRNLMANRPAKYKDANIM 346

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 44/306 (14%), Positives = 103/306 (33%), Gaps = 45/306 (14%)

Query: 182 AANELASLARDNNRNRKIIVEEGGILPLLKLLK----------EAASPDAQTAAANALFN 231
           A   L  L+ D   +R  + E GG+  + +LL+          +  S   +  A  AL N
Sbjct: 168 AVCVLMKLSFDEE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226

Query: 232 IA-TDQETVRFIVDVLG-VPIIVSVLGEAPVKVQVAVANLVARMA-ELDSIAQEEFVREN 288
           +   D      +  + G +  +V+ L      +Q  +A+++  ++   D  +++      
Sbjct: 227 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG 286

Query: 289 VTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHY 348
             ++L+              +S  + + +L          S + T N            +
Sbjct: 287 SVKALMECAL--EVKKESTLKSVLSALWNL----------SAHCTENKADICAVDGALAF 334

Query: 349 NKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVL 408
                   +      +  +    L  +S     +    E + ++ R             L
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN----EDHRQILREN---------NCL 381

Query: 409 DQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRM-----IGPLVALLSNRNVDVATE 463
             LL+ +   S   + + A  ++  L+   P  ++ +     +  L  L+ +++  +A  
Sbjct: 382 QTLLQHLKSHSLT-IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 440

Query: 464 AVIALS 469
           +  AL 
Sbjct: 441 SAAALR 446

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 16/125 (12%), Positives = 41/125 (32%), Gaps = 8/125 (6%)

Query: 181 DAANELASLARDNNRNRKIIVEEGGILP----LLKLLKEAASPDAQTAAANALFNI---- 232
              + L +L+     N+  I    G L      L    +  +     +    L N+    
Sbjct: 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365

Query: 233 ATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRS 292
           AT+++  + + +   +  ++  L    + +       +  ++  +   QE          
Sbjct: 366 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSM 425

Query: 293 LISLL 297
           L +L+
Sbjct: 426 LKNLI 430

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 20/116 (17%), Positives = 49/116 (42%), Gaps = 2/116 (1%)

Query: 169 STIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANA 228
            T  +  I+S       ++SL   N  +R+I+ E   +  LL+ LK + S    + A   
Sbjct: 344 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSNACGT 402

Query: 229 LFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEE 283
           L+N++  + +    + D+  V ++ +++      + +  A  +  +        ++
Sbjct: 403 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 458

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 48/350 (13%), Positives = 106/350 (30%), Gaps = 47/350 (13%)

Query: 186 LASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDV 245
           L  +        +        +   K    A        A   L  ++ D+E    + ++
Sbjct: 129 LEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNEL 188

Query: 246 LGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDL 305
            G+  I  +L        +   +                +R     +L +L   D+A   
Sbjct: 189 GGLQAIAELLQVDCEMYGLTNDHYSIT------------LRRYAGMALTNLTFGDVANKA 236

Query: 306 PKPESAKTTIHSLVQM----KKEMTEKST----NVTNNSDGSSRGGHGQHYN-KKDRELE 356
                    + +LV       +++ +       N++  +D +S+    +  + K   E  
Sbjct: 237 TLCSMKGC-MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 295

Query: 357 TPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIH 416
               K     +   ALW LS  C       E+ A++           A A L   L    
Sbjct: 296 LEVKKESTLKSVLSALWNLSAHC------TENKADICAVD------GALAFLVGTLTYRS 343

Query: 417 EESDAMLQ---TPAIRSIGCLAKTFPAKEKRM-----IGPLVALLSNRNVDVATEAVIAL 468
           + +   +       +R++  L  T     + +     +  L+  L + ++ + + A   L
Sbjct: 344 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403

Query: 469 SKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKI-SDRAQVHGLVFLCYLA 517
               + +  ++    +A+ +   V  L  L+        +     L  L 
Sbjct: 404 WNLSARNPKDQ----EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 50.3 bits (120), Expect = 9e-07
 Identities = 11/75 (14%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAA 225
           + +  ++   +    +A   L +L+  N ++++ + + G +  L  L+  +        +
Sbjct: 383 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH-SKHKMIAMGS 441

Query: 226 ANALFNIATDQETVR 240
           A AL N+  ++    
Sbjct: 442 AAALRNLMANRPAKY 456

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 48/364 (13%), Positives = 100/364 (27%), Gaps = 58/364 (15%)

Query: 173 MGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNI 232
           MG        ++ L            +  +   +  LL +L        +   +  L  +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSML----GTHDKDDMSRTLLAM 56

Query: 233 ATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRS 292
           ++ Q++   +     +P+++ +L                    L +    +  R   + +
Sbjct: 57  SSSQDSCISMRQSGCLPLLIQLLHGNDK-----------DSVLLGNSRGSKEARARASAA 105

Query: 293 LISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKD 352
           L +++      D  +       +H L Q++            +  G  +  +        
Sbjct: 106 LHNIIHSQ--PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKN-------- 155

Query: 353 RELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLL 412
             +  P             L KLS            + E R +  +         + +LL
Sbjct: 156 -PMPAPVEH--QICPAVCVLMKLS-----------FDEEHRHAMNELG---GLQAIAELL 198

Query: 413 RLIHE-------ESDAMLQTPAIRSIGCLA------KTFPAKEKRMIGPLVALLSNRNVD 459
           ++  E            L+  A  ++  L       K      K  +  LVA L + + D
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258

Query: 460 VATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALS 519
           +       L       +       K + E   V  LM       +      V      LS
Sbjct: 259 LQQVIASVLRNLSWRAD---VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 315

Query: 520 AGNS 523
           A  +
Sbjct: 316 AHCT 319

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQE 237
              AA  +       +  RK + +  GIL LL+LLK   + D Q A   AL N+   D +
Sbjct: 27  ISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK-VQNEDVQRAVCGALRNLVFEDND 85

Query: 238 TVRFIVDVLGVPIIVSVLGEAP-VKVQVAVANLVARMAELDS 278
               + ++ GVP ++ VL +   ++ +  +  L+  ++  D 
Sbjct: 86  NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 16/122 (13%), Positives = 48/122 (39%), Gaps = 8/122 (6%)

Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238
           +      L +L  ++N N+  + E  G+  LL++LK+    + +      L+N++++ + 
Sbjct: 69  QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL 128

Query: 239 VRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC 298
              ++    + +  +++        +  +          +   +  +  NVT  L ++  
Sbjct: 129 KNLMITEALLTLTENII--------IPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS 180

Query: 299 MD 300
             
Sbjct: 181 AG 182

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 11/143 (7%)

Query: 400 NSPAAKAVLDQLLR-LIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALL 453
           ++   +  L++ +  L  +       + A   I               + R I  L+ LL
Sbjct: 2   SNADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL 61

Query: 454 SNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFL 513
             +N DV      AL   V  DN N+      + E +GVP L+++LK +   +    +  
Sbjct: 62  KVQNEDVQRAVCGALRNLVFEDNDNK----LEVAELNGVPRLLQVLKQTRDLETKKQITG 117

Query: 514 CYLALSAGNS-KALEQARALNAL 535
               LS+ +  K L    AL  L
Sbjct: 118 LLWNLSSNDKLKNLMITEALLTL 140

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 27/188 (14%), Positives = 53/188 (28%), Gaps = 31/188 (16%)

Query: 362 AKVRIACAEALWKLSK---GCLLSLWSAESNAELRRSA------FKTNSPAAKAVLDQLL 412
           +  RI+ A  L          L   + ++ N   R          K        V + L 
Sbjct: 37  SLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILN 96

Query: 413 RLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFV 472
            +   +  A ++  AI S     K  P    +++        +++ +V      A+S   
Sbjct: 97  NMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIN 156

Query: 473 SPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARAL 532
                              +P L+ LLK  +         +   A  A N    + +   
Sbjct: 157 DK---------------ATIPLLINLLKDPNG-------DVRNWAAFAININKYDNSDIR 194

Query: 533 NALEGAAR 540
           +      +
Sbjct: 195 DCFVEMLQ 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	576
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.98
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.97
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.97
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.97
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.97
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.96
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.96
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.95
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.95
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.93
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.93
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.93
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.92
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.91
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.91
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.91
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.89
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.88
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.87
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.86
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.84
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.44
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.36
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.35
3grl_A	651	General vesicular transport factor P115; vesicle t	99.35
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.29
3grl_A	651	General vesicular transport factor P115; vesicle t	99.27
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.26
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.26
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.04
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.01
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.93
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.87
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.85
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.8
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.77
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.67
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.63
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.47
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.39
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.32
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.27
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.26
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.1
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.99
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.97
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.75
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.67
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.64
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.61
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.54
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.41
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.28
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.27
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.26
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.07
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.97
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	96.91
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.76
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.69
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.65
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.08
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	95.85
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	95.65
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	94.91
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	94.82
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	90.37
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	88.2
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	88.06
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	85.55
2x1g_F	971	Cadmus; transport protein, developmental protein,	83.45
2x19_B	963	Importin-13; nuclear transport, protein transport;	83.05
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	81.67

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=3.7e-41  Score=370.83  Aligned_cols=368  Identities=18%  Similarity=0.209  Sum_probs=280.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHh-hcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHH
Q 041643          164 VWSFISTIQMGQIKSRVDAANELASLA-RDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRF  241 (576)
Q Consensus       164 v~~li~~L~~G~~e~k~~AA~~L~~La-~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~  241 (576)
                      +.++|..|++++.+.+..|+..++.|. ....+..+.|++.|+||+||+||++++++..|++|||||+||+. ++++++.
T Consensus        59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~  138 (510)
T 3ul1_B           59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  138 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            566799999999999999999998754 33345578999999999999999866558999999999999987 5688999


Q ss_pred             HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhh
Q 041643          242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQM  321 (576)
Q Consensus       242 iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~  321 (576)
                      |+++|+||.|+++|++++.+++++|+|+|+|||.+++++|+.+.+.|++++|+.+|.+.........     .+....+.
T Consensus       139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~-----~~~~a~~~  213 (510)
T 3ul1_B          139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG-----YLRNLTWT  213 (510)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH-----HHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHH-----HHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999986532111110     11111111


Q ss_pred             hccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc
Q 041643          322 KKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS  401 (576)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s  401 (576)
                      ..+.+.    +....+.+....++++.+.+.....|+++    +..|+|||++|+.++.+++          +...    
T Consensus       214 L~nl~~----~~~~~~~~~~~~~~lp~L~~LL~~~~~~v----~~~A~~aL~~L~~~~~~~~----------~~i~----  271 (510)
T 3ul1_B          214 LSNLCR----NKNPAPPLDAVEQILPTLVRLLHHNDPEV----LADSCWAISYLTDGPNERI----------EMVV----  271 (510)
T ss_dssp             HHHHHC----CCSSCCCHHHHHHHHHHHHHHTTCSCHHH----HHHHHHHHHHHTSSCHHHH----------HHHH----
T ss_pred             HHHHhh----cccchhHHHHHHhHHHHHHHHHhcCCHHH----HHHHHHHHHHHhhchhhhH----------HHHH----
Confidence            111110    00001111000112333323345567765    5789999999998765432          1111    


Q ss_pred             hhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCC
Q 041643          402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDN  476 (576)
Q Consensus       402 ~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n  476 (576)
                        ..++++.|+.+|.+.+ +.++.+++++||||+.....     .+.|++++|+.+|++.+..++++|+|+|+|++.+. 
T Consensus       272 --~~g~i~~Lv~lL~~~~-~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~-  347 (510)
T 3ul1_B          272 --KKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR-  347 (510)
T ss_dssp             --TTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC-
T ss_pred             --hcccchhhhhhhcCCC-hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc-
Confidence              1246888999998765 89999999999999865433     24588999999999999999999999999998643 


Q ss_pred             CCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCc--hHHHHhccchhhH------------------
Q 041643          477 FNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGN--SKALEQARALNAL------------------  535 (576)
Q Consensus       477 ~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~--~~~l~~~~~l~~L------------------  535 (576)
                         .++++.+++.|++++|+++|++++. +|..|+++|++++.+...  ...+.+.|++++|                  
T Consensus       348 ---~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~a  424 (510)
T 3ul1_B          348 ---QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA  424 (510)
T ss_dssp             ---HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             ---HHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence               6899999999999999999999887 999999999999764322  2345555555433                  


Q ss_pred             ---------------------h---hhhcccCCCCCcHHHHHHHHHHHHHhhcC
Q 041643          536 ---------------------E---GAARTVLPQHPELRDLFAQAIYHLTLYQA  565 (576)
Q Consensus       536 ---------------------e---~~~~~~~~q~~~~~~l~~~a~~~l~~y~~  565 (576)
                                           +   |+++++.+|+|+++++|++|..+|+.||+
T Consensus       425 L~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~  478 (510)
T 3ul1_B          425 ISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  478 (510)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence                                 1   45677889999999999999999999998

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.1e-39  Score=360.25  Aligned_cols=368  Identities=18%  Similarity=0.214  Sum_probs=281.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHh-hcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHH
Q 041643          164 VWSFISTIQMGQIKSRVDAANELASLA-RDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRF  241 (576)
Q Consensus       164 v~~li~~L~~G~~e~k~~AA~~L~~La-~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~  241 (576)
                      +.+++..+++++.+.+..|+..+..|. ..+.+....|++.|+||+||++|+.++++..|++|+|||+||+.+ ++++..
T Consensus        78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~  157 (529)
T 3tpo_A           78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  157 (529)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            345589999999999999999998754 444456788999999999999998765599999999999999985 577889


Q ss_pred             HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhh
Q 041643          242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQM  321 (576)
Q Consensus       242 iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~  321 (576)
                      ++++|+||.|+.+|++++.+++++|+|+|+|||.+++++|+.+.+.|++++|+.+|...........     .+....+.
T Consensus       158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~-----~~~~a~~~  232 (529)
T 3tpo_A          158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG-----YLRNLTWT  232 (529)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHH-----HHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHH-----HHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999976532111100     11111111


Q ss_pred             hccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc
Q 041643          322 KKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS  401 (576)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s  401 (576)
                      ..+.+.    +....+.+....++++.+.+.....|+++    +.+|+|||++|+.++.+++          +...    
T Consensus       233 L~nl~~----~~~~~~~~~~~~~~lp~L~~LL~~~~~~v----~~~a~~aL~~l~~~~~~~~----------~~v~----  290 (529)
T 3tpo_A          233 LSNLCR----NKNPAPPLDAVEQILPTLVRLLHHNDPEV----LADSCWAISYLTDGPNERI----------EMVV----  290 (529)
T ss_dssp             HHHHHC----CCTTCCCHHHHHHHHHHHHHHTTSSCHHH----HHHHHHHHHHHHSSCHHHH----------HHHH----
T ss_pred             HHHHHh----cccchhhHHHHhhHHHHHHHHhcCCcHHH----HHHHHHHHHHhhhhhhhhH----------HHHH----
Confidence            111110    11011111111112333333445567765    5789999999998765432          1111    


Q ss_pred             hhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCC
Q 041643          402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDN  476 (576)
Q Consensus       402 ~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n  476 (576)
                        ..++++.|+.+|.+.+ +.++.+|+++||||+.....     .+.|++++|+.+|++.+.+++++|+|+|+|++.+. 
T Consensus       291 --~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~-  366 (529)
T 3tpo_A          291 --KKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR-  366 (529)
T ss_dssp             --TTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSC-
T ss_pred             --hccchHHHHHHhcCCC-hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhccc-
Confidence              1256888999998765 89999999999999865433     24589999999999999999999999999998643 


Q ss_pred             CCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccC--chHHHHhccchhhH------------------
Q 041643          477 FNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAG--NSKALEQARALNAL------------------  535 (576)
Q Consensus       477 ~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~--~~~~l~~~~~l~~L------------------  535 (576)
                         .+++..+++.|++|+|+.+|.+++. +|..|+++|++++.+..  ....+.+.|++++|                  
T Consensus       367 ---~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~a  443 (529)
T 3tpo_A          367 ---QDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA  443 (529)
T ss_dssp             ---HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             ---HHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHH
Confidence               6899999999999999999999887 99999999999975432  22445666665543                  


Q ss_pred             ---------------------h---hhhcccCCCCCcHHHHHHHHHHHHHhhcC
Q 041643          536 ---------------------E---GAARTVLPQHPELRDLFAQAIYHLTLYQA  565 (576)
Q Consensus       536 ---------------------e---~~~~~~~~q~~~~~~l~~~a~~~l~~y~~  565 (576)
                                           |   |+++++.+|+|+++++|++|..+|+.||+
T Consensus       444 L~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~  497 (529)
T 3tpo_A          444 ISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  497 (529)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence                                 1   45677889999999999999999999997

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=4.5e-35  Score=318.42  Aligned_cols=343  Identities=16%  Similarity=0.136  Sum_probs=262.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHH
Q 041643          165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIV  243 (576)
Q Consensus       165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv  243 (576)
                      ..++..|++++.+.|..|+.+|.+|+..+++++..|++.|+||+||++|++++ +..|+.|+|+|.||+.+ ++++..|+
T Consensus         5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~~i~   83 (457)
T 1xm9_A            5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLETR   83 (457)
T ss_dssp             HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            34588999999999999999999999877777889999999999999999988 99999999999999996 89999999


Q ss_pred             HcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhh
Q 041643          244 DVLGVPIIVSVLG-EAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK  322 (576)
Q Consensus       244 ~~Gavp~LV~lL~-s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~  322 (576)
                      ++|+||+|+++|+ ++++++++.|+|+|+||+.+ +.+|..+.+ |+||+|+.+|....    +                
T Consensus        84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~----s----------------  141 (457)
T 1xm9_A           84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPF----S----------------  141 (457)
T ss_dssp             HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHH----H----------------
T ss_pred             HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccc----c----------------
Confidence            9999999999998 88999999999999999987 789999999 99999999994310    0                


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc-hhccc-ch----------
Q 041643          323 KEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL-WSAES-NA----------  390 (576)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I-avae~-~~----------  390 (576)
                      .               ...+   -..  +.++..|++    +...|+|||++||.+ +++. .+.+. +.          
T Consensus       142 ~---------------~~~~---~~~--~~~e~~~~~----v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~  196 (457)
T 1xm9_A          142 G---------------WCDG---NSN--MSREVVDPE----VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQN  196 (457)
T ss_dssp             T---------------CC--------------CCCHH----HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHH
T ss_pred             c---------------cccC---ccc--hhcccccHH----HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHh
Confidence            0               0000   001  233334554    357899999999976 3331 22221 10          


Q ss_pred             ---------H--------HHHh------------------------------hhccC-----------------------
Q 041643          391 ---------E--------LRRS------------------------------AFKTN-----------------------  400 (576)
Q Consensus       391 ---------~--------lrr~------------------------------a~k~~-----------------------  400 (576)
                               .        +|.-                              .|...                       
T Consensus       197 ~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (457)
T 1xm9_A          197 CVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS  276 (457)
T ss_dssp             HHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGG
T ss_pred             hccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHH
Confidence                     0        0000                              00000                       


Q ss_pred             -chhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch----------hhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 041643          401 -SPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA----------KEKRMIGPLVALLSNRNVDVATEAVIALS  469 (576)
Q Consensus       401 -s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~----------~~~~~I~~LV~LL~~~~~~V~~eAa~AL~  469 (576)
                       .-.-.++++.|+.+|.+++++.++++|+++|+||++....          .+.++||+|+++|.+++++++++|+|+|+
T Consensus       277 ~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~  356 (457)
T 1xm9_A          277 GWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS  356 (457)
T ss_dssp             GGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHH
Confidence             0001356788899998877789999999999999874321          13588999999999999999999999999


Q ss_pred             hhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccCh------h-HHHHHHHHHHHHhcccC-chHHHHhccchhhHhhhhcc
Q 041643          470 KFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD------R-AQVHGLVFLCYLALSAG-NSKALEQARALNALEGAART  541 (576)
Q Consensus       470 nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d------~-vq~~A~~~L~~lal~~~-~~~~l~~~~~l~~Le~~~~~  541 (576)
                      |++.+     .+ .+.+++.|++++||++|..++      . ++..++.+|+++..+.+ +...+.++|+++.|+.+.  
T Consensus       357 nls~~-----~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~--  428 (457)
T 1xm9_A          357 NMSRH-----PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLC--  428 (457)
T ss_dssp             HHHTS-----GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHH--
T ss_pred             HHhcC-----HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHH--
Confidence            99863     23 445556789999999998763      2 66788999999865443 356788899999998552  


Q ss_pred             cCCCCCc-HHHHHHHHHHHHHhhcCCC
Q 041643          542 VLPQHPE-LRDLFAQAIYHLTLYQAGS  567 (576)
Q Consensus       542 ~~~q~~~-~~~l~~~a~~~l~~y~~~~  567 (576)
                          .+. .+++|.+|..+|+.||.-.
T Consensus       429 ----~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          429 ----RSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             ----HCTTCHHHHHHHHHHHHTTSSST
T ss_pred             ----cCCCcHHHHHHHHHHHHHHHcch
Confidence                344 7799999999999999743

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.4e-33  Score=321.99  Aligned_cols=400  Identities=13%  Similarity=0.082  Sum_probs=287.2

Q ss_pred             ccccHHHHHHHHHhhhcc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Q 041643          117 TNADFKKVFSLLESSIGD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMG--QIKSRVDAANELASL  189 (576)
Q Consensus       117 ~~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G--~~e~k~~AA~~L~~L  189 (576)
                      ..+ ++.|..+|.+....     ...|.+++..++.....+++ ..+.+..++..++.+|.++  +.+.+.+|++.|.+|
T Consensus       329 ~~g-v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~-~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayL  406 (810)
T 3now_A          329 EQG-VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPF-GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYL  406 (810)
T ss_dssp             HHH-HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSS-TTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHH
T ss_pred             HcC-cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccch-hhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            344 58888888543221     23334443322112223444 3567888889999999998  889999999999999


Q ss_pred             hhcCcccHHHHH-hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCc------------------------------h
Q 041643          190 ARDNNRNRKIIV-EEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE------------------------------T  238 (576)
Q Consensus       190 a~~~~~~~~~I~-~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~------------------------------~  238 (576)
                      +.+ ++.+..++ +.|+||+||+||++++ +..|+.|+|+|.||+.+.+                              +
T Consensus       407 S~~-~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v  484 (810)
T 3now_A          407 TLD-AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFI  484 (810)
T ss_dssp             TTS-HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHH
T ss_pred             hCC-cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHH
Confidence            986 56666666 6799999999999988 9999999999999998542                              1


Q ss_pred             H---HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCc-chhhhhH
Q 041643          239 V---RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPK-PESAKTT  314 (576)
Q Consensus       239 ~---~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~-~i~~~~s  314 (576)
                      +   +.|+++|+||+||.+|+++++++|++|+|+|+|||. ++++|+.+.++|+||+|+.+|++++..  .+ ..+|  +
T Consensus       485 ~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~--~k~~Aa~--A  559 (810)
T 3now_A          485 NKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEK--GKRHATQ--A  559 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHH--HHHHHHH--H
T ss_pred             HHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHH--HHHHHHH--H
Confidence            2   789999999999999999999999999999999996 577999999999999999999887521  01 1111  2


Q ss_pred             HHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHH
Q 041643          315 IHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRR  394 (576)
Q Consensus       315 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr  394 (576)
                      +.++...... ...+. +       ....++++++......++..   ..+..|++||.||+.++++          .++
T Consensus       560 L~nL~~~~~p-~~~~~-~-------~~~~~aIppLv~LL~~~~~~---l~~~eAl~AL~NLa~~~d~----------~~~  617 (810)
T 3now_A          560 LARIGITINP-EVSFS-G-------QRSLDVIRPLLNLLQQDCTA---LENFESLMALTNLASMNES----------VRQ  617 (810)
T ss_dssp             HHHHHHHSCH-HHHTT-T-------HHHHHTHHHHHHTTSTTSCH---HHHHHHHHHHHHHTTSCHH----------HHH
T ss_pred             HHHHhcCCCh-hhhhc-c-------hhhhcHHHHHHHHhCCCCcH---HHHHHHHHHHHHHhcCCHH----------HHH
Confidence            2222111110 00000 0       00001344432222222111   1346799999999987543          233


Q ss_pred             hhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 041643          395 SAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALS  469 (576)
Q Consensus       395 ~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~  469 (576)
                      ....      .++++.|+.++.+++ +.+|.+|+++|+||+......     ..+.+++|+.+|++.+.+++++|+|||+
T Consensus       618 ~Ii~------aG~l~~Lv~LL~s~~-~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa  690 (810)
T 3now_A          618 RIIK------EQGVSKIEYYLMEDH-LYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA  690 (810)
T ss_dssp             HHHH------TTHHHHHHHHHHSCC-TTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred             HHHH------cCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            2211      256899999998754 899999999999999743321     2478999999999999999999999999


Q ss_pred             hhcCCCCCCCHHHHHHHHH-CCCcHhHHHhhccChh-HHHHHHHHHHHHhccc-CchHHHHhccchhhHhhhhcccCCCC
Q 041643          470 KFVSPDNFNRSEHSKAIIE-FDGVPPLMRLLKISDR-AQVHGLVFLCYLALSA-GNSKALEQARALNALEGAARTVLPQH  546 (576)
Q Consensus       470 nla~~~n~~~~~~~~~Iv~-~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~-~~~~~l~~~~~l~~Le~~~~~~~~q~  546 (576)
                      |++++    ++++++.|++ .|++++|++||.+++. +|..|++++++++.+. .....+.++|++++|..+.+..   +
T Consensus       691 nLt~~----s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~---d  763 (810)
T 3now_A          691 IITSV----SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLP---D  763 (810)
T ss_dssp             HHHHH----CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCT---T
T ss_pred             HHhCC----CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCc---c
Confidence            99863    2578999999 9999999999999887 9999999999997543 3457899999999998553221   2


Q ss_pred             CcHHHHHHHHHHHHH
Q 041643          547 PELRDLFAQAIYHLT  561 (576)
Q Consensus       547 ~~~~~l~~~a~~~l~  561 (576)
                      +...++++.|...|+
T Consensus       764 ~~~~~i~e~Al~aL~  778 (810)
T 3now_A          764 DTRAKAREVATQCLA  778 (810)
T ss_dssp             STTHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHH
Confidence            345566665555554

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=2.2e-32  Score=304.64  Aligned_cols=378  Identities=17%  Similarity=0.186  Sum_probs=267.5

Q ss_pred             cccHHHHHHHHHhhhcc-----hHHHhhhcccC-c------cccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 041643          118 NADFKKVFSLLESSIGD-----MRWLLTIFDSD-E------VNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANE  185 (576)
Q Consensus       118 ~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~-~------~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~  185 (576)
                      ..+++.|+.+|.+..-+     ..+|.+++..+ .      ..+++|++             |.+|++++.+.|++|+.+
T Consensus        47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~L-------------V~LL~s~~~~vq~~Aa~A  113 (584)
T 3l6x_A           47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVL-------------VGLLDHPKKEVHLGACGA  113 (584)
T ss_dssp             CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH-------------HHGGGCSSHHHHHHHHHH
T ss_pred             cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHH-------------HHHHCCCCHHHHHHHHHH
Confidence            58999999999754322     23444554322 1      12234444             899999999999999999


Q ss_pred             HHHHhhc-CcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhc--------
Q 041643          186 LASLARD-NNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLG--------  256 (576)
Q Consensus       186 L~~La~~-~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~--------  256 (576)
                      |.+|+.. +++|+..|++.||||+||+||+++.+...|++|++||+||+.+++++..|++ |+||+||++|.        
T Consensus       114 L~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~  192 (584)
T 3l6x_A          114 LKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWER  192 (584)
T ss_dssp             HHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC-
T ss_pred             HHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccc
Confidence            9999984 5899999999999999999999854388999999999999999999999995 67999999872        


Q ss_pred             ----------CCChhHHHHHHHHHHHHhcCChHHHHHHHhc-CCchhHHHhhccccccCCCc-chh-h-hhHHHHHHhhh
Q 041643          257 ----------EAPVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIALDLPK-PES-A-KTTIHSLVQMK  322 (576)
Q Consensus       257 ----------s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~-g~I~~LV~LL~~~t~~~~~~-~i~-~-~~si~~~v~~~  322 (576)
                                +.+++++++|+++|.||+.+++++|..+++. |+|++||.+|++........ ... . --.++++....
T Consensus       193 ~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~  272 (584)
T 3l6x_A          193 EPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQV  272 (584)
T ss_dssp             ---------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTH
T ss_pred             cccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccc
Confidence                      1247999999999999999888889999886 66789999998531000111 111 0 01222221110


Q ss_pred             c-cccc---ccccc--CCCCCCCCCCCCCCCCcc----------cccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhc
Q 041643          323 K-EMTE---KSTNV--TNNSDGSSRGGHGQHYNK----------KDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSA  386 (576)
Q Consensus       323 ~-~~~~---~~~~~--~~~~~~~~~~~~g~~~~~----------~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iava  386 (576)
                      . ....   .....  .+..+ .....+|++.+.          ..++..+++    +++.|++|||+||.|+...    
T Consensus       273 ~~e~~~~~~~~~~~~~~~~~~-~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~----v~E~Aa~AL~nL~ag~~~~----  343 (584)
T 3l6x_A          273 HREIPQAERYQEAAPNVANNT-GTSPARGYELLFQPEVVRIYISLLKESKTPA----ILEASAGAIQNLCAGRWTY----  343 (584)
T ss_dssp             HHHSTTCCC---------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHSSCSHH----
T ss_pred             cccccchhhhhhhcccccccc-cccCchhHHHHhcccHHHHHHHHHccCCCHH----HHHHHHHHHHHHHcCCccc----
Confidence            0 0000   00000  00000 011223444210          112233444    5689999999999875321    


Q ss_pred             ccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh---hhCcHHHHHHhhcCC-------
Q 041643          387 ESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK---EKRMIGPLVALLSNR-------  456 (576)
Q Consensus       387 e~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~---~~~~I~~LV~LL~~~-------  456 (576)
                        ...+|. .+.     -.++++.|+++|.+++ +.++..|+++|+||+......   ..++||+||.+|.++       
T Consensus       344 --~~~~~~-~v~-----~~~glp~Lv~LL~s~~-~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~  414 (584)
T 3l6x_A          344 --GRYIRS-ALR-----QEKALSAIADLLTNEH-ERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWN  414 (584)
T ss_dssp             --HHHHHH-HHT-----SHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGT
T ss_pred             --cHHHHH-HHH-----HcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCccccccc
Confidence              001221 111     1357899999998765 899999999999999865542   457899999999876       


Q ss_pred             -CHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccC--hh-HHHHHHHHHHHHhcccCchHHHHhccc
Q 041643          457 -NVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKIS--DR-AQVHGLVFLCYLALSAGNSKALEQARA  531 (576)
Q Consensus       457 -~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~--d~-vq~~A~~~L~~lal~~~~~~~l~~~~~  531 (576)
                       ..++...|+++|+|++..+    +++++.|++.|||++|++||+++  .+ +++.|.++||++..+.+....+.+.|+
T Consensus       415 ~s~~v~~~a~~tL~NL~a~~----~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~  489 (584)
T 3l6x_A          415 FSEDTVISILNTINEVIAEN----LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGW  489 (584)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTC
T ss_pred             chHHHHHHHHHHHHHHhcCC----HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence             4789999999999998643    69999999999999999999986  44 888999999999887777777776554

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=3.7e-32  Score=286.95  Aligned_cols=268  Identities=16%  Similarity=0.187  Sum_probs=219.0

Q ss_pred             HHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccC----------CChHHHHHHHHHHHHhhcCCc-hHHHHHHc
Q 041643          177 KSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEA----------ASPDAQTAAANALFNIATDQE-TVRFIVDV  245 (576)
Q Consensus       177 e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g----------~~~~~q~~AA~AL~nLa~~~~-~~~~iv~~  245 (576)
                      ..+..|+++|.+++.+ +++|+.|++.||+|+|++||..+          .++..|++|+|+|.||+.+.+ ++..|...
T Consensus        47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            4456799999999986 89999999999999999999531          126799999999999998765 66667554


Q ss_pred             -CCHHHHHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhc
Q 041643          246 -LGVPIIVSVLGEAPVKVQVAVANLVARMAEL-DSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK  323 (576)
Q Consensus       246 -Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~-~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~  323 (576)
                       |+||.||++|+++++++|+.|+|+|.||+.. ++.+|+.+.+.|+||+||++|...                       
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~-----------------------  182 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV-----------------------  182 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC-----------------------
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC-----------------------
Confidence             5599999999999999999999999999975 678999999999999999986321                       


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchh
Q 041643          324 EMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPA  403 (576)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a  403 (576)
                                                      .|++    +++.|++|||+|+.++.++          |....     .
T Consensus       183 --------------------------------~~~~----~~~~A~~aL~nLs~~~~~n----------k~~i~-----~  211 (354)
T 3nmw_A          183 --------------------------------KKES----TLKSVLSALWNLSAHCTEN----------KADIC-----A  211 (354)
T ss_dssp             --------------------------------CCHH----HHHHHHHHHHHHHTTCHHH----------HHHHH-----H
T ss_pred             --------------------------------CCHH----HHHHHHHHHHHHHccChhh----------hHHHH-----H
Confidence                                            0222    4578999999999854322          22111     0


Q ss_pred             HHHHHHHHHHHhhhcCCh---hhHHHHHHHHHHHhc---CCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          404 AKAVLDQLLRLIHEESDA---MLQTPAIRSIGCLAK---TFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       404 ~~~vV~~Ll~lL~~~~~~---~lq~~a~~aLgnLa~---~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                      ..++++.|+++|.++++.   .++..|+.+|.||+.   ..++     .+.|+||+||.+|++++.+++++|+|+|+|++
T Consensus       212 ~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa  291 (354)
T 3nmw_A          212 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS  291 (354)
T ss_dssp             STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence            136799999999876532   489999999999985   2322     24588999999999999999999999999998


Q ss_pred             CCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch
Q 041643          473 SPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS  523 (576)
Q Consensus       473 ~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~  523 (576)
                      .+    ++++++.|++.|+|++|++||++++. ++..|+++|.+|+.+.++.
T Consensus       292 ~~----~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          292 AR----NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             SS----CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             CC----CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            53    26899999999999999999999887 8999999999998765553

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=2.6e-32  Score=304.00  Aligned_cols=310  Identities=18%  Similarity=0.189  Sum_probs=242.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC--CchHHHHH
Q 041643          166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD--QETVRFIV  243 (576)
Q Consensus       166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~--~~~~~~iv  243 (576)
                      .+|.+|++++.+.|.+||.+|.+|+..+++++..|++.|+||+||+||++++ +.+|++|+|||+||+.+  ++++..|+
T Consensus        52 ~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~nk~~I~  130 (584)
T 3l6x_A           52 EVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDNKIAIK  130 (584)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            3489999999999999999999999877899999999999999999999999 99999999999999984  79999999


Q ss_pred             HcCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhh
Q 041643          244 DVLGVPIIVSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK  322 (576)
Q Consensus       244 ~~Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~  322 (576)
                      ++|+||+||++|++ ++.+++++++++|.+|+. +++++..|.+ |+||+||++|....    +                
T Consensus       131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~----s----------------  188 (584)
T 3l6x_A          131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPH----S----------------  188 (584)
T ss_dssp             HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHH----H----------------
T ss_pred             HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccc----c----------------
Confidence            99999999999987 578999999999999997 5688888886 57999999984210    0                


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCch
Q 041643          323 KEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP  402 (576)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~  402 (576)
                      .+               ... .....  |.++.+|+++    +..|+++|.+||..+.+          .|+....    
T Consensus       189 g~---------------~~~-~~~~~--k~~~~~d~~V----~~nAa~~L~NLs~~~~~----------~R~~i~~----  232 (584)
T 3l6x_A          189 GW---------------ERE-PNEDC--KPRHIEWESV----LTNTAGCLRNVSSERSE----------ARRKLRE----  232 (584)
T ss_dssp             CC---------------C-------------CCCCHHH----HHHHHHHHHHHTSSCHH----------HHHHHHH----
T ss_pred             cc---------------ccc-ccccc--cccccccHHH----HHHHHHHHHHHhcCCHH----------HHHHHHH----
Confidence            00               000 00001  3344556665    58999999999976532          2332211    


Q ss_pred             hHHHHHHHHHHHhhhc-----CChhhHHHHHHHHHHHhcCCch------------------------------hhhCcHH
Q 041643          403 AAKAVLDQLLRLIHEE-----SDAMLQTPAIRSIGCLAKTFPA------------------------------KEKRMIG  447 (576)
Q Consensus       403 a~~~vV~~Ll~lL~~~-----~~~~lq~~a~~aLgnLa~~~~~------------------------------~~~~~I~  447 (576)
                       +.++++.|+.+|++.     .+...+++|+++|.||+.....                              .+.++|+
T Consensus       233 -~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~  311 (584)
T 3l6x_A          233 -CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVR  311 (584)
T ss_dssp             -STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHH
T ss_pred             -cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHH
Confidence             236789999999753     3467899999999999853100                              0124578


Q ss_pred             HHHHhhc-CCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHH
Q 041643          448 PLVALLS-NRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKA  525 (576)
Q Consensus       448 ~LV~LL~-~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~  525 (576)
                      +|+.+|+ +.++++++.|+|||.|++.+........++.|.++||+|.|++||++++. ++..|+++|.||+.+..+...
T Consensus       312 ~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~  391 (584)
T 3l6x_A          312 IYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKEL  391 (584)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHH
Confidence            9999995 56899999999999999764321112334466678999999999999877 999999999999998888777


Q ss_pred             HHhccchhhHh
Q 041643          526 LEQARALNALE  536 (576)
Q Consensus       526 l~~~~~l~~Le  536 (576)
                      | ..|+++.|.
T Consensus       392 I-~~g~ip~LV  401 (584)
T 3l6x_A          392 I-GKHAIPNLV  401 (584)
T ss_dssp             H-HHHHHHHHH
T ss_pred             H-HhCCHHHHH
Confidence            6 678999987

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.2e-31  Score=293.95  Aligned_cols=374  Identities=20%  Similarity=0.201  Sum_probs=277.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCc-ccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHH
Q 041643          164 VWSFISTIQMGQIKSRVDAANELASLARDNN-RNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRF  241 (576)
Q Consensus       164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~-~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~  241 (576)
                      +-.++..|++++.+.+..|+..|.+++..++ ++...+++.|+||+|+++|++++++..|+.|+|+|++|+.+ ++++..
T Consensus        76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  155 (528)
T 4b8j_A           76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV  155 (528)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            4445889999999999999999999976544 67889999999999999999875589999999999999996 688899


Q ss_pred             HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchh--hhhHHHHHH
Q 041643          242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPES--AKTTIHSLV  319 (576)
Q Consensus       242 iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~--~~~si~~~v  319 (576)
                      +++.|++|.|+.+|++++.++++.|+|+|++|+.+++.+|+.+.+.|+|++|+.+|....   +. .+.  ...++.++.
T Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~---~~-~v~~~a~~~L~~L~  231 (528)
T 4b8j_A          156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHT---KL-SMLRNATWTLSNFC  231 (528)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTC---CH-HHHHHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCC---CH-HHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988999999999999999999995321   11 010  001222211


Q ss_pred             hhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc--------------hh
Q 041643          320 QMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL--------------WS  385 (576)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I--------------av  385 (576)
                      ...           + .+......++++.+.......|+++    +..|+++|++|+.++...+              .+
T Consensus       232 ~~~-----------~-~~~~~~~~~~l~~L~~lL~~~~~~v----~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL  295 (528)
T 4b8j_A          232 RGK-----------P-QPSFEQTRPALPALARLIHSNDEEV----LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  295 (528)
T ss_dssp             CSS-----------S-CCCHHHHTTHHHHHHHHTTCCCHHH----HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT
T ss_pred             cCC-----------C-CCcHHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Confidence            110           0 0000000123333323334456654    4789999999997765431              11


Q ss_pred             cccchHHHHhhhccCchh------------HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHH
Q 041643          386 AESNAELRRSAFKTNSPA------------AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGP  448 (576)
Q Consensus       386 ae~~~~lrr~a~k~~s~a------------~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~  448 (576)
                      ...++.+|..++...+..            -.++++.|+.+|.+..++.++..|+++|+||+.....     .+.+++|+
T Consensus       296 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~  375 (528)
T 4b8j_A          296 LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGP  375 (528)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHH
T ss_pred             cCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHH
Confidence            122333444333211000            1256788999998763489999999999999974432     13488999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCc-----
Q 041643          449 LVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGN-----  522 (576)
Q Consensus       449 LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~-----  522 (576)
                      |+++|.+++++++++|+|+|+|++..++   +++.+.+++.|++++|+++|..++. ++..++.+|+++....++     
T Consensus       376 L~~lL~~~~~~v~~~a~~aL~nl~~~~~---~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~  452 (528)
T 4b8j_A          376 LVNLLQTAEFDIKKEAAWAISNATSGGS---HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLA  452 (528)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999999999997543   6889999999999999999998877 888899999999643332     


Q ss_pred             -------hHHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHHHHhhcCC
Q 041643          523 -------SKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAG  566 (576)
Q Consensus       523 -------~~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~  566 (576)
                             ...+.+.|++..|+      .+|+|.+++++++|..+|+.||+.
T Consensus       453 ~~~~~~~~~~i~~~~~~~~l~------~L~~~~~~~v~~~a~~il~~~~~~  497 (528)
T 4b8j_A          453 AGDVNVFSQMIDEAEGLEKIE------NLQSHDNNEIYEKAVKILEAYWMD  497 (528)
T ss_dssp             TCSCCHHHHHHHHTTHHHHHH------HGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             cccccHHHHHHHHCCcHHHHH------HHHcCCCHHHHHHHHHHHHHHCCC
Confidence                   23444555555554      447889999999999999999984

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=2.5e-32  Score=297.08  Aligned_cols=262  Identities=16%  Similarity=0.186  Sum_probs=215.3

Q ss_pred             HHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHcc-----------CCChHHHHHHHHHHHHhhcCCc-hHHHHHH-cCC
Q 041643          181 DAANELASLARDNNRNRKIIVEEGGILPLLKLLKE-----------AASPDAQTAAANALFNIATDQE-TVRFIVD-VLG  247 (576)
Q Consensus       181 ~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~-----------g~~~~~q~~AA~AL~nLa~~~~-~~~~iv~-~Ga  247 (576)
                      +|+++|.+++.+ ++||+.|++.|+|++|++||..           .+ +..|++|+|+|.||+.+.+ ++..+.. .|+
T Consensus       167 qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~-~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga  244 (458)
T 3nmz_A          167 PAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYS-ITLRRYAGMALTNLTFGDVANKATLCSMKGC  244 (458)
T ss_dssp             HHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred             HHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCC-HHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence            999999999875 8999999999999999999952           23 6789999999999999765 5555655 556


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccc
Q 041643          248 VPIIVSVLGEAPVKVQVAVANLVARMAEL-DSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMT  326 (576)
Q Consensus       248 vp~LV~lL~s~~~~vq~~Aa~aL~~LA~~-~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~  326 (576)
                      ||+||++|+++++++++.|+|+|.||+.. ++.+|+.|.+.|+||+||++|...                          
T Consensus       245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s--------------------------  298 (458)
T 3nmz_A          245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV--------------------------  298 (458)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC--------------------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC--------------------------
Confidence            99999999999999999999999999985 678999999999999999986321                          


Q ss_pred             ccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHH
Q 041643          327 EKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKA  406 (576)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~  406 (576)
                                                   .+++    +++.|+.|||+|+.++.+          .|....     ...+
T Consensus       299 -----------------------------~~~~----v~~~A~~aL~nLs~~~~~----------nk~~I~-----~~~G  330 (458)
T 3nmz_A          299 -----------------------------KKES----TLKSVLSALWNLSAHCTE----------NKADIC-----AVDG  330 (458)
T ss_dssp             -----------------------------CSHH----HHHHHHHHHHHHHHHCHH----------HHHHHH-----HSTT
T ss_pred             -----------------------------CCHH----HHHHHHHHHHHHccCCHH----------HHHHHH-----HhcC
Confidence                                         0222    457899999999974322          222111     0136


Q ss_pred             HHHHHHHHhhhcCCh---hhHHHHHHHHHHHhc---CCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCC
Q 041643          407 VLDQLLRLIHEESDA---MLQTPAIRSIGCLAK---TFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPD  475 (576)
Q Consensus       407 vV~~Ll~lL~~~~~~---~lq~~a~~aLgnLa~---~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~  475 (576)
                      +++.|+++|.+.++.   .++..|+++|.||+.   ..++     .+.|+||+||.+|++++.+++++|+|+|+|++...
T Consensus       331 al~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~  410 (458)
T 3nmz_A          331 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN  410 (458)
T ss_dssp             HHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC
T ss_pred             cHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC
Confidence            789999999876532   489999999999985   2322     24588999999999999999999999999998642


Q ss_pred             CCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCc
Q 041643          476 NFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGN  522 (576)
Q Consensus       476 n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~  522 (576)
                          +++++.|++.|+|++|++||++++. ++..|+++|.+|+.+.+.
T Consensus       411 ----~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~  454 (458)
T 3nmz_A          411 ----PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  454 (458)
T ss_dssp             ----HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred             ----HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence                6899999999999999999998887 899999999999876543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.98  E-value=1.2e-31  Score=291.89  Aligned_cols=313  Identities=15%  Similarity=0.141  Sum_probs=245.2

Q ss_pred             HHHHhc------------CCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCH----------HHHHHHHccCC-ChH----
Q 041643          168 ISTIQM------------GQIKSRVDAANELASLARDNNRNRKIIVEEGGI----------LPLLKLLKEAA-SPD----  220 (576)
Q Consensus       168 i~~L~~------------G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgI----------ppLV~LL~~g~-~~~----  220 (576)
                      |+.|+.            |+.+.+.+|+++|.|++..+++..+...+.|.+          +.++++|.+.. .++    
T Consensus        76 v~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (458)
T 3nmz_A           76 IQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKN  155 (458)
T ss_dssp             HHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSC
T ss_pred             HHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccC
Confidence            677775            568999999999999999888888888888888          77788887642 122    


Q ss_pred             -H-------HHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcC-----------CChhHHHHHHHHHHHHhcCChHHH
Q 041643          221 -A-------QTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGE-----------APVKVQVAVANLVARMAELDSIAQ  281 (576)
Q Consensus       221 -~-------q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s-----------~~~~vq~~Aa~aL~~LA~~~~~~r  281 (576)
                       +       +.+|+|+|+||+.++++|..|++.|++++|+.+|..           .+..+|..|+|+|.||+.+++..+
T Consensus       156 ~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k  235 (458)
T 3nmz_A          156 PMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK  235 (458)
T ss_dssp             C--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccH
Confidence             2       239999999999999999999999999999999952           236789999999999999888788


Q ss_pred             HHHHhc-CCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHH
Q 041643          282 EEFVRE-NVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEV  360 (576)
Q Consensus       282 ~~i~~~-g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~v  360 (576)
                      ..+... |+||+||.+|+++                                                        |++ 
T Consensus       236 ~~i~~~~GaIp~LV~LL~s~--------------------------------------------------------~~~-  258 (458)
T 3nmz_A          236 ATLCSMKGCMRALVAQLKSE--------------------------------------------------------SED-  258 (458)
T ss_dssp             HHHHHCHHHHHHHHHGGGCS--------------------------------------------------------CHH-
T ss_pred             HHHHHcCCcHHHHHHHHhCC--------------------------------------------------------CHH-
Confidence            888654 6699999999643                                                        222 


Q ss_pred             HHHHHHHHHHHHHHhhcC-CcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc
Q 041643          361 KAKVRIACAEALWKLSKG-CLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP  439 (576)
Q Consensus       361 k~~~k~~Aa~ALw~La~g-~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~  439 (576)
                         +++.|+|||++|+.+ +..+          |....      ..++|+.|+++|.+..++.++.+++++|+||+...+
T Consensus       259 ---v~~~A~~aL~nLs~~~~~~~----------k~~I~------~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~  319 (458)
T 3nmz_A          259 ---LQQVIASVLRNLSWRADVNS----------KKTLR------EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  319 (458)
T ss_dssp             ---HHHHHHHHHHHHTSSCCHHH----------HHHHH------HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH
T ss_pred             ---HHHHHHHHHHHHhcCCCHHH----------HHHHH------HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH
Confidence               468999999999986 3222          22111      125789999976554458899999999999997332


Q ss_pred             h-h-----hhCcHHHHHHhhcCCCH----HHHHHHHHHHHhhcC--CCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HH
Q 041643          440 A-K-----EKRMIGPLVALLSNRNV----DVATEAVIALSKFVS--PDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQ  506 (576)
Q Consensus       440 ~-~-----~~~~I~~LV~LL~~~~~----~V~~eAa~AL~nla~--~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq  506 (576)
                      + +     ..|+||+|+++|++.+.    +++++|+|+|.|++.  .+   ++++++.|++.|++++|++||++++. +|
T Consensus       320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~---~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~  396 (458)
T 3nmz_A          320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT---NEDHRQILRENNCLQTLLQHLKSHSLTIV  396 (458)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHHSSCSCHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHcccHHHHHHHHcCCChHHH
Confidence            2 1     45899999999987654    599999999999984  12   26889999999999999999998877 99


Q ss_pred             HHHHHHHHHHhc-ccCchHHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHHHHh
Q 041643          507 VHGLVFLCYLAL-SAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTL  562 (576)
Q Consensus       507 ~~A~~~L~~lal-~~~~~~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~  562 (576)
                      ..|+++|++++. +..+...+.++|++++|..+.+..   +...++-...|+..|-.
T Consensus       397 ~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~---~~~v~~~Aa~AL~nL~~  450 (458)
T 3nmz_A          397 SNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK---HKMIAMGSAAALRNLMA  450 (458)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS---SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHc
Confidence            999999999984 566678899999999998553222   34555555566666643

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=4e-31  Score=287.29  Aligned_cols=371  Identities=14%  Similarity=0.149  Sum_probs=252.7

Q ss_pred             cHHHHHHHHHhhhcc-----hHHHhhhcccCcc-ccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 041643          120 DFKKVFSLLESSIGD-----MRWLLTIFDSDEV-NLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDN  193 (576)
Q Consensus       120 ~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~-~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~  193 (576)
                      +++.++..|.+...+     ...+-+++.++.. ..   .+...+.+..    ++.+|++++.+.+..|+++|.+|+..+
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~---~i~~~g~i~~----Lv~lL~s~~~~~~~~A~~aL~nLa~~~   75 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQ---QVYQLGGICK----LVDLLRSPNQNVQQAAAGALRNLVFRS   75 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHH---HHHHTTHHHH----HHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHH---HHHHcCCHHH----HHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            578889999764332     2333444432211 00   0112222322    378999999999999999999999987


Q ss_pred             cccHHHHHhcCCHHHHHHHHc-cCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhh--------cCC------
Q 041643          194 NRNRKIIVEEGGILPLLKLLK-EAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVL--------GEA------  258 (576)
Q Consensus       194 ~~~~~~I~~~GgIppLV~LL~-~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL--------~s~------  258 (576)
                      ++++..|++.|+||+||++|+ +++ ++.|++|+|+|+||+.+++++..|++ |++|+|+++|        +++      
T Consensus        76 ~~~k~~i~~~G~i~~Lv~lL~~~~~-~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e  153 (457)
T 1xm9_A           76 TTNKLETRRQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE  153 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred             HHHHHHHHHcCCHHHHHHHHhhCCC-HHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence            999999999999999999999 777 99999999999999999889999999 9999999999        333      


Q ss_pred             --ChhHHHHHHHHHHHHhcCChHHHHHHHhc-CCchhHHHhhccccccC--CCcchhhhh-HHHHHHhhh-ccc-c----
Q 041643          259 --PVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIALD--LPKPESAKT-TIHSLVQMK-KEM-T----  326 (576)
Q Consensus       259 --~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~-g~I~~LV~LL~~~t~~~--~~~~i~~~~-si~~~v~~~-~~~-~----  326 (576)
                        +.+++..|+|+|.||+.+ +++|+.+.+. |+|++|+.+|.+++...  +.+..-... .++++.... ... .    
T Consensus       154 ~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~  232 (457)
T 1xm9_A          154 VVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ  232 (457)
T ss_dssp             CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHH
T ss_pred             cccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhh
Confidence              345666999999999987 8999999997 99999999998642100  111000000 122211000 000 0    


Q ss_pred             -------------ccccccCC---------CCCCC--CCCCCCCCCc---------c-cccccCCHHHHHHHHHHHHHHH
Q 041643          327 -------------EKSTNVTN---------NSDGS--SRGGHGQHYN---------K-KDRELETPEVKAKVRIACAEAL  372 (576)
Q Consensus       327 -------------~~~~~~~~---------~~~~~--~~~~~g~~~~---------~-~~~e~~d~~vk~~~k~~Aa~AL  372 (576)
                                   ...+.+..         ..+..  ....+|+..+         . .....++++    +++.|+|||
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~----~~e~a~~aL  308 (457)
T 1xm9_A          233 LEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA----TLEACAGAL  308 (457)
T ss_dssp             HHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH----HHHHHHHHH
T ss_pred             cccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHH----HHHHHHHHH
Confidence                         00000000         00000  0000111110         0 011223444    468999999


Q ss_pred             HHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh---hhCcHHHH
Q 041643          373 WKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK---EKRMIGPL  449 (576)
Q Consensus       373 w~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~---~~~~I~~L  449 (576)
                      ++|+.|+...      .....|..+..     .++++.|+++|.+++ ++++..|+++|.||++.....   ..++||+|
T Consensus       309 ~nl~~~~~~~------~~~~~~~~v~~-----~~~l~~Lv~LL~~~~-~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~L  376 (457)
T 1xm9_A          309 QNLTASKGLM------SSGMSQLIGLK-----EKGLPQIARLLQSGN-SDVVRSGASLLSNMSRHPLLHRVMGNQVFPEV  376 (457)
T ss_dssp             HHHTTCSSSH------HHHHHHHHHTT-----SCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHH
T ss_pred             HHhccCcCcc------hHHHHHHHHHH-----cCCchHHHHHHhCCC-HhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHH
Confidence            9999886431      01221222210     146899999999876 899999999999999865442   45789999


Q ss_pred             HHhhcCCC------HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccC-hh-HHHHHHHHHHHHhccc
Q 041643          450 VALLSNRN------VDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKIS-DR-AQVHGLVFLCYLALSA  520 (576)
Q Consensus       450 V~LL~~~~------~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~-d~-vq~~A~~~L~~lal~~  520 (576)
                      |++|.+++      .++...++++|+|+...+    +++.+.|.+.||+++|++|++++ +. +++.|.++|.++..+.
T Consensus       377 v~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~----~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          377 TRLLTSHTGNTSNSEDILSSACYTVRNLMASQ----PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC----THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC----HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence            99998764      468889999999997643    48899999999999999999988 66 8999999998886443

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.97  E-value=3.2e-30  Score=283.30  Aligned_cols=376  Identities=18%  Similarity=0.182  Sum_probs=277.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-CcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHH
Q 041643          163 WVWSFISTIQMGQIKSRVDAANELASLARD-NNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVR  240 (576)
Q Consensus       163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~-~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~  240 (576)
                      .+..++..|++++.+.+..|+..|..+... +++++..+++.|+||+|+++|++++++..|+.|+|+|++|+.+ ++.+.
T Consensus        88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~  167 (530)
T 1wa5_B           88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK  167 (530)
T ss_dssp             CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence            355668999999999999999999999754 2456788899999999999999973399999999999999995 56788


Q ss_pred             HHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchh--hhhHHHHH
Q 041643          241 FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPES--AKTTIHSL  318 (576)
Q Consensus       241 ~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~--~~~si~~~  318 (576)
                      .+++.|++|.|+++|++++.++++.|+|+|++|+.+++.+++.+...|++++|+.+|....    .. +.  ...++.++
T Consensus       168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~-v~~~a~~~L~~L  242 (530)
T 1wa5_B          168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK----PS-LIRTATWTLSNL  242 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC----HH-HHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC----HH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999988999999999999999999997531    10 00  01122222


Q ss_pred             HhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc--------------h
Q 041643          319 VQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL--------------W  384 (576)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I--------------a  384 (576)
                      ......           ........++++.+.......|+++    +..|+++|.+|+.++.+.+              .
T Consensus       243 ~~~~~~-----------~~~~~~~~~~l~~L~~lL~~~d~~v----~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~l  307 (530)
T 1wa5_B          243 CRGKKP-----------QPDWSVVSQALPTLAKLIYSMDTET----LVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL  307 (530)
T ss_dssp             HCCSSS-----------CCCHHHHGGGHHHHHHHTTCCCHHH----HHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG
T ss_pred             hCCCCC-----------CCcHHHHHhHHHHHHHHHcCCCHHH----HHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHH
Confidence            111100           0000000112333223334456654    5789999999998755431              1


Q ss_pred             hcccchHHHHhhhccCchh------------HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHH
Q 041643          385 SAESNAELRRSAFKTNSPA------------AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIG  447 (576)
Q Consensus       385 vae~~~~lrr~a~k~~s~a------------~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~  447 (576)
                      +.+.+..+|..++......            ..++++.|+.+|.+++ +.++..|+++|+||+...+.     .+.+++|
T Consensus       308 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~  386 (530)
T 1wa5_B          308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWTISNITAGNTEQIQAVIDANLIP  386 (530)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred             HCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence            1222334444443211111            1257888999998765 88999999999999975432     1358999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch---
Q 041643          448 PLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS---  523 (576)
Q Consensus       448 ~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~---  523 (576)
                      +|+++|++++++++++|+|+|++++..++. .+++.+.+++.|++++|+++|...+. ++..++.+|.++....++.   
T Consensus       387 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~  465 (530)
T 1wa5_B          387 PLVKLLEVAEYKTKKEACWAISNASSGGLQ-RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA  465 (530)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHTTT-CTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhc
Confidence            999999999999999999999999865421 12788999999999999999998877 8888999999887544332   


Q ss_pred             ---------HHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHHHHhhcCC
Q 041643          524 ---------KALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAG  566 (576)
Q Consensus       524 ---------~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~  566 (576)
                               ..+.+.|+++.|+      .+|+|.+.+++.+|..+|+.||..
T Consensus       466 ~~~~~~~~~~~l~~~g~~~~L~------~L~~~~~~~v~~~a~~il~~~~~~  511 (530)
T 1wa5_B          466 RGLNINENADFIEKAGGMEKIF------NCQQNENDKIYEKAYKIIETYFGE  511 (530)
T ss_dssp             HTCSSCHHHHHHHHTTHHHHHH------GGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             ccccccHHHHHHHHcCcHHHHH------HHHcCCCHHHHHHHHHHHHHHCCc
Confidence                     2344555555554      447788899999999999999983

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.97  E-value=4.5e-30  Score=283.35  Aligned_cols=339  Identities=18%  Similarity=0.207  Sum_probs=263.7

Q ss_pred             hccccccHHHHHHHHHhhh-cc----hHHHh-hhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041643          114 SITTNADFKKVFSLLESSI-GD----MRWLL-TIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELA  187 (576)
Q Consensus       114 ~i~~~~~l~~l~~~L~~~~-~~----~~~ll-~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~  187 (576)
                      .|+..|.+|+|+.+|..+. .+    ..|.| +++.++....  -.+...+.+..    ++.+|++++.+.|+.|+++|+
T Consensus       114 ~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~--~~vv~~Gaip~----Lv~LL~s~~~~v~e~A~~aL~  187 (529)
T 3tpo_A          114 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT--KAVVDGGAIPA----FISLLASPHAHISEQAVWALG  187 (529)
T ss_dssp             HHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH--HHHHHTTHHHH----HHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH--HHHHHCCCHHH----HHHHHcCCCHHHHHHHHHHHH
Confidence            4568999999999996432 11    34544 4444321000  00122222222    278999999999999999999


Q ss_pred             HHhhcCcccHHHHHhcCCHHHHHHHHccCCC----hHHHHHHHHHHHHhhcCCchH-HHHHHcCCHHHHHHhhcCCChhH
Q 041643          188 SLARDNNRNRKIIVEEGGILPLLKLLKEAAS----PDAQTAAANALFNIATDQETV-RFIVDVLGVPIIVSVLGEAPVKV  262 (576)
Q Consensus       188 ~La~~~~~~~~~I~~~GgIppLV~LL~~g~~----~~~q~~AA~AL~nLa~~~~~~-~~iv~~Gavp~LV~lL~s~~~~v  262 (576)
                      +|+.+++.++..|++.|++++|+.+|..++.    ...+.+++|+|.|++.+.+.. ......|++|.|+++|.++++++
T Consensus       188 nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v  267 (529)
T 3tpo_A          188 NIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV  267 (529)
T ss_dssp             HHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH
T ss_pred             HHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH
Confidence            9999888999999999999999999986541    346889999999999976543 34445789999999999999999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCC
Q 041643          263 QVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRG  342 (576)
Q Consensus       263 q~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~  342 (576)
                      +..++|+|++++.++++....+...|++|.||.+|.++                                          
T Consensus       268 ~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~------------------------------------------  305 (529)
T 3tpo_A          268 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT------------------------------------------  305 (529)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS------------------------------------------
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC------------------------------------------
Confidence            99999999999998888888999999999999999542                                          


Q ss_pred             CCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChh
Q 041643          343 GHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAM  422 (576)
Q Consensus       343 ~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~  422 (576)
                                    ++.    ++..|+++|++|+.+++.+          +...+      -.++++.|+.+|.+.+ +.
T Consensus       306 --------------~~~----v~~~a~~aL~nl~~~~~~~----------~~~i~------~~g~l~~L~~LL~~~~-~~  350 (529)
T 3tpo_A          306 --------------ELP----IVTPALRAIGNIVTGTDEQ----------TQKVI------DAGALAVFPSLLTNPK-TN  350 (529)
T ss_dssp             --------------CHH----HHHHHHHHHHHHTTSCHHH----------HHHHH------HTTGGGGHHHHTTCSS-HH
T ss_pred             --------------Chh----HHHHHHHHHHHHHccchHH----------HHHHh------hcccHHHHHHHHcCCC-HH
Confidence                          222    4578999999999876533          11111      1246788899998765 88


Q ss_pred             hHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHH
Q 041643          423 LQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMR  497 (576)
Q Consensus       423 lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~  497 (576)
                      ++..|+++|+||+...+.     .+.|+||+|+.+|++++.+++++|+|||+|++++++   .++++++++.|+|++|++
T Consensus       351 i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~---~~~~~~l~~~g~i~~L~~  427 (529)
T 3tpo_A          351 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT---VEQIVYLVHCGIIEPLMN  427 (529)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCcCHHHHHH
Confidence            999999999999975543     246899999999999999999999999999997653   689999999999999999


Q ss_pred             hhccChh-HHHHHHHHHHHHhc---ccCch----HHHHhccchhhHhhh
Q 041643          498 LLKISDR-AQVHGLVFLCYLAL---SAGNS----KALEQARALNALEGA  538 (576)
Q Consensus       498 LL~~~d~-vq~~A~~~L~~lal---~~~~~----~~l~~~~~l~~Le~~  538 (576)
                      ||++.|. ++..++.+|.+|..   ..++.    ..+.+.|++..|+.+
T Consensus       428 LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L  476 (529)
T 3tpo_A          428 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL  476 (529)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH
Confidence            9999887 77777777777742   22333    346789999998744

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.97  E-value=4.2e-30  Score=282.72  Aligned_cols=362  Identities=17%  Similarity=0.195  Sum_probs=271.2

Q ss_pred             HHHHHHHHHHHHchhcCccchhhhccccccHHHHHHHHHhhh-cc----hHHHh-hhcccCccccCCCCCCCcchHhHHH
Q 041643           91 KNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSI-GD----MRWLL-TIFDSDEVNLSLPPIASNDPILAWV  164 (576)
Q Consensus        91 ~t~~~a~~~~~~C~~~g~~~r~~~i~~~~~l~~l~~~L~~~~-~~----~~~ll-~~s~~~~~~~~lp~ia~~~~i~~~v  164 (576)
                      +..-+|..-+|++-....---.-.|+..|.+|+|+.+|..+. .+    ..|.| |+...+....  -.+...+.+..  
T Consensus        72 ~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~--~~vv~~GaIp~--  147 (510)
T 3ul1_B           72 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT--KAVVDGGAIPA--  147 (510)
T ss_dssp             HHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH--HHHHHTTHHHH--
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH--HHHHHCCCHHH--
Confidence            334455666777632111111124678999999999996432 22    34544 4443221000  00111222222  


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCC----hHHHHHHHHHHHHhhcCCchHH
Q 041643          165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAAS----PDAQTAAANALFNIATDQETVR  240 (576)
Q Consensus       165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~----~~~q~~AA~AL~nLa~~~~~~~  240 (576)
                        ++.+|++++.+.|+.|+++|++|+.+++.++..+.+.|++++|+.+|.+.+.    ...+.+++|+|.|++.+.....
T Consensus       148 --Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~  225 (510)
T 3ul1_B          148 --FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP  225 (510)
T ss_dssp             --HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred             --HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchh
Confidence              2899999999999999999999999888899999999999999999986541    3467899999999999765443


Q ss_pred             -HHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHH
Q 041643          241 -FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLV  319 (576)
Q Consensus       241 -~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v  319 (576)
                       .....|++|.|+++|.+++++++..|+|+|.+|+.+.++....+.+.|+++.|+.+|.++                   
T Consensus       226 ~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-------------------  286 (510)
T 3ul1_B          226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-------------------  286 (510)
T ss_dssp             CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-------------------
T ss_pred             HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-------------------
Confidence             344578999999999999999999999999999988888888999999999999999642                   


Q ss_pred             hhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhcc
Q 041643          320 QMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKT  399 (576)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~  399 (576)
                                                           ++.    ++..++++|++|+.++..+          ++..+  
T Consensus       287 -------------------------------------~~~----v~~~al~aL~nl~~~~~~~----------~~~i~--  313 (510)
T 3ul1_B          287 -------------------------------------ELP----IVTPALRAIGNIVTGTDEQ----------TQKVI--  313 (510)
T ss_dssp             -------------------------------------CHH----HHHHHHHHHHHHTTSCHHH----------HHHHH--
T ss_pred             -------------------------------------Chh----hhhHHHHHHHHhhcCCHHH----------HHHHh--
Confidence                                                 122    4578999999999876433          11111  


Q ss_pred             CchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCC
Q 041643          400 NSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSP  474 (576)
Q Consensus       400 ~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~  474 (576)
                          -.++++.|+.+|++.+ +.++..|+++|+||+.....     .+.+++|+|+.+|++++++++++|+|||+|++++
T Consensus       314 ----~~g~l~~L~~LL~~~~-~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~  388 (510)
T 3ul1_B          314 ----DAGALAVFPSLLTNPK-TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG  388 (510)
T ss_dssp             ----HTTGGGGCC-CTTCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             ----hccchHHHHHHhcCCC-HHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence                1245677888888765 88999999999999875543     2458999999999999999999999999999976


Q ss_pred             CCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhc---ccCch----HHHHhccchhhHhhh
Q 041643          475 DNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLAL---SAGNS----KALEQARALNALEGA  538 (576)
Q Consensus       475 ~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal---~~~~~----~~l~~~~~l~~Le~~  538 (576)
                      ++   .+++.++++.|++++|++||++.|. ++..++.+|.+|..   +.++.    ..+.+.|++..||.+
T Consensus       389 ~~---~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L  457 (510)
T 3ul1_B          389 GT---VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL  457 (510)
T ss_dssp             CC---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG
T ss_pred             CC---HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH
Confidence            53   6899999999999999999999887 77778887777742   33333    346789999999744

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.97  E-value=5.2e-29  Score=264.98  Aligned_cols=374  Identities=18%  Similarity=0.187  Sum_probs=271.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhh-cCcccHHHHHhc-CCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHH
Q 041643          165 WSFISTIQMGQIKSRVDAANELASLAR-DNNRNRKIIVEE-GGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRF  241 (576)
Q Consensus       165 ~~li~~L~~G~~e~k~~AA~~L~~La~-~~~~~~~~I~~~-GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~  241 (576)
                      ..++..|++++.+.|..|+..|..+.. ..++..+.+++. |++|.|+++|++++++..|..|+++|.+++.+ +++++.
T Consensus        23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  102 (450)
T 2jdq_A           23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRI  102 (450)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            345889999999999999999999764 223344566777 99999999999983399999999999999984 577888


Q ss_pred             HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCc-chhhhhHHHHHHh
Q 041643          242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPK-PESAKTTIHSLVQ  320 (576)
Q Consensus       242 iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~-~i~~~~si~~~v~  320 (576)
                      +++.|++|.|+++|++++.++++.|+++|++++.++++.|+.+.+.|++++|+.+|.++.   +.. ......++.++..
T Consensus       103 ~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~---~~~v~~~a~~~L~~l~~  179 (450)
T 2jdq_A          103 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN---RLTMTRNAVWALSNLCR  179 (450)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC---CHHHHHHHHHHHHHHHC
T ss_pred             HHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999988899999999999999999997421   110 0000112222211


Q ss_pred             hhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCccc---------c-----hhc
Q 041643          321 MKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLS---------L-----WSA  386 (576)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~---------I-----ava  386 (576)
                      ...          + ........++++.+.......|+++    +..++++|.+|+.+..++         +     .+.
T Consensus       180 ~~~----------~-~~~~~~~~~~l~~L~~~l~~~~~~v----~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  244 (450)
T 2jdq_A          180 GKS----------P-PPEFAKVSPCLNVLSWLLFVSDTDV----LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM  244 (450)
T ss_dssp             CSS----------S-CCCGGGTGGGHHHHHHHTTCCCHHH----HHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT
T ss_pred             CCC----------C-CCCHHHHHHHHHHHHHHHccCCHHH----HHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC
Confidence            100          0 0000001123443323333456654    578999999998765332         1     112


Q ss_pred             ccchHHHHhhhcc------Cch------hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHH
Q 041643          387 ESNAELRRSAFKT------NSP------AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPL  449 (576)
Q Consensus       387 e~~~~lrr~a~k~------~s~------a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~L  449 (576)
                      +.+...|..++..      ..+      ...++++.|+.++.+++ +.++..|+++|+||+.....     .+.+++|+|
T Consensus       245 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  323 (450)
T 2jdq_A          245 HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK-ESIKKEACWTISNITAGNRAQIQTVIDANIFPAL  323 (450)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred             CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence            2233444433221      111      01257889999998754 88999999999999964432     135889999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch-----
Q 041643          450 VALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS-----  523 (576)
Q Consensus       450 V~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~-----  523 (576)
                      +++|++++++++++|+|+|+|++..+   ++++.+.+++.|++++|+++|+.++. ++..|+++|.+++...++.     
T Consensus       324 ~~~l~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~  400 (450)
T 2jdq_A          324 ISILQTAEFRTRKEAAWAITNATSGG---SAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG  400 (450)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHcCC---CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc
Confidence            99999999999999999999998643   26888899999999999999998877 8999999999987543322     


Q ss_pred             -------HHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHHHHhhcCC
Q 041643          524 -------KALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAG  566 (576)
Q Consensus       524 -------~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~  566 (576)
                             ..+.+.|+++.|+      .+|+|.+.+++.+|..+|+.||+.
T Consensus       401 ~~~~~~~~~l~~~g~~~~l~------~l~~~~~~~v~~~a~~~l~~~~~~  444 (450)
T 2jdq_A          401 TGINPYCALIEEAYGLDKIE------FLQSHENQEIYQKAFDLIEHYFGT  444 (450)
T ss_dssp             SCCCHHHHHHHHHHCHHHHH------HHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred             cchhHHHHHHHHcCcHHHHH------HHHcCCCHHHHHHHHHHHHHHCCc
Confidence                   3344555555554      446788899999999999999973

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.96  E-value=1.2e-27  Score=260.01  Aligned_cols=365  Identities=16%  Similarity=0.147  Sum_probs=265.8

Q ss_pred             ccccccHHHHHHHHHhhhcc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 041643          115 ITTNADFKKVFSLLESSIGD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASL  189 (576)
Q Consensus       115 i~~~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~L  189 (576)
                      |...+.++.|+.+|.....+     +..|.+++..+....  ..+...+    .+..++..|++++.+.+..++.+|.+|
T Consensus        97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~i~~~g----~i~~L~~ll~~~~~~~~~~~~~~L~~l  170 (529)
T 1jdh_A           97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK--MAVRLAG----GLQKMVALLNKTNVKFLAITTDCLQIL  170 (529)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH--HHHHHHT----HHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH--HHHHHcC----CHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            45679999999999653322     223334433211000  0001111    233347889999999999999999999


Q ss_pred             hhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcC------------
Q 041643          190 ARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGE------------  257 (576)
Q Consensus       190 a~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s------------  257 (576)
                      +..+++++..+++.|++|+|+++|++++....+..++.+|.||+.+++++..+++.|+++.|+++|++            
T Consensus       171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~  250 (529)
T 1jdh_A          171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT  250 (529)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHH
Confidence            98888999999999999999999999875677888999999999999999999999988777766644            


Q ss_pred             ---------------------------CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchh
Q 041643          258 ---------------------------APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPES  310 (576)
Q Consensus       258 ---------------------------~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~  310 (576)
                                                 ++.+++..++|+|++|+.++++.+..+.+.|+++.|+.+|....         
T Consensus       251 L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~---------  321 (529)
T 1jdh_A          251 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG---------  321 (529)
T ss_dssp             HHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT---------
T ss_pred             HHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC---------
Confidence                                       45677777888888888777788888999999999999985320         


Q ss_pred             hhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccch
Q 041643          311 AKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNA  390 (576)
Q Consensus       311 ~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~  390 (576)
                                                                   ++++    ++..|+++|++|+.++...       .
T Consensus       322 ---------------------------------------------~~~~----v~~~a~~~L~nl~~~~~~~-------~  345 (529)
T 1jdh_A          322 ---------------------------------------------DRED----ITEPAICALRHLTSRHQEA-------E  345 (529)
T ss_dssp             ---------------------------------------------TCHH----HHHHHHHHHHHHTSSSTTH-------H
T ss_pred             ---------------------------------------------CHHH----HHHHHHHHHHHHHcCCchH-------H
Confidence                                                         1122    4578999999999775431       1


Q ss_pred             HHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhcCCCHHHHHHHHH
Q 041643          391 ELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSNRNVDVATEAVI  466 (576)
Q Consensus       391 ~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~~~~~~V~~eAa~  466 (576)
                      ..|+....      .++++.|+++|.+++++.++..++++|+|++......    +.+++|+|+++|++++++++++|+|
T Consensus       346 ~~~~~i~~------~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  419 (529)
T 1jdh_A          346 MAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM  419 (529)
T ss_dssp             HHHHHHHH------TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHH------cCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhc
Confidence            12322211      2468999999987664589999999999999754432    4588999999999889999999999


Q ss_pred             HHHh--hcCCCCC---------------CCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHh
Q 041643          467 ALSK--FVSPDNF---------------NRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQ  528 (576)
Q Consensus       467 AL~n--la~~~n~---------------~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~  528 (576)
                      +|+|  +..+++.               .+++++..+.+.|++++|+++|..++. ++..|..+|++++.+.+....+.+
T Consensus       420 ~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~  499 (529)
T 1jdh_A          420 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA  499 (529)
T ss_dssp             ------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             ccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            8887  3322110               024667789999999999999998877 999999999999866566778889


Q ss_pred             ccchhhHhhhhcccCCCCCcHHHHHHHHHHHHHh
Q 041643          529 ARALNALEGAARTVLPQHPELRDLFAQAIYHLTL  562 (576)
Q Consensus       529 ~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~  562 (576)
                      .|+++.|+.+      ++|.+.+++.+|...|+.
T Consensus       500 ~~~~~~L~~l------~~~~~~~v~~~a~~aL~~  527 (529)
T 1jdh_A          500 EGATAPLTEL------LHSRNEGVATYAAAVLFR  527 (529)
T ss_dssp             TTCHHHHHHG------GGCSSHHHHHHHHHHHHH
T ss_pred             cCChHHHHHH------hcCCCHHHHHHHHHHHHh
Confidence            9999999865      456778888888877754

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.96  E-value=7.5e-28  Score=276.50  Aligned_cols=270  Identities=16%  Similarity=0.161  Sum_probs=221.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHH-
Q 041643          164 VWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFI-  242 (576)
Q Consensus       164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~i-  242 (576)
                      +-.++.+|++++++.|++|+++|.||+.+ +++|..|++.|+||||+++|++++ +.+|++|+|||.||+.+.+....+ 
T Consensus       497 Vp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~-~~~k~~Aa~AL~nL~~~~~p~~~~~  574 (810)
T 3now_A          497 TTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGT-EKGKRHATQALARIGITINPEVSFS  574 (810)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCChhhhhc
Confidence            44568999999999999999999999975 779999999999999999999999 999999999999999754432211 


Q ss_pred             --HHcCCHHHHHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHH
Q 041643          243 --VDVLGVPIIVSVLGEA-PVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLV  319 (576)
Q Consensus       243 --v~~Gavp~LV~lL~s~-~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v  319 (576)
                        ...|+||+|+++|.++ +...+..|+|+|.||+..+++.+..+.++|++|+|+.+|.++.                  
T Consensus       575 ~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~------------------  636 (810)
T 3now_A          575 GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH------------------  636 (810)
T ss_dssp             THHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC------------------
T ss_pred             chhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC------------------
Confidence              1246999999999876 3455678999999999988899999999999999999996431                  


Q ss_pred             hhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhcc
Q 041643          320 QMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKT  399 (576)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~  399 (576)
                                                            +    .++..|+++|++|+.++.           .+.. |..
T Consensus       637 --------------------------------------~----~Vq~~A~~~L~NLa~~~~-----------~~~~-~v~  662 (810)
T 3now_A          637 --------------------------------------L----YLTRAAAQCLCNLVMSED-----------VIKM-FEG  662 (810)
T ss_dssp             --------------------------------------T----THHHHHHHHHHHHTTSHH-----------HHHH-HHS
T ss_pred             --------------------------------------H----HHHHHHHHHHHHHhCChH-----------HHHH-HHh
Confidence                                                  1    146789999999997642           2222 211


Q ss_pred             CchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hh-hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcC
Q 041643          400 NSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KE-KRMIGPLVALLSNRNVDVATEAVIALSKFVS  473 (576)
Q Consensus       400 ~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~-~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~  473 (576)
                      +    .+.++.|+.++.+.+ ..+|..|+++|+||+...+.     .+ .++||+|+++|+++++++++.|+|+|+|+++
T Consensus       663 ~----~g~l~~Lv~LL~s~d-~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          663 N----NDRVKFLALLCEDED-EETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             S----SSHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             c----cCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence            1    146889999998765 89999999999999873322     23 6899999999999999999999999999987


Q ss_pred             CCCCCCHHHHHHHHHCCCcHhHHHhhccCh---h-HHHHHHHHHHHH
Q 041643          474 PDNFNRSEHSKAIIEFDGVPPLMRLLKISD---R-AQVHGLVFLCYL  516 (576)
Q Consensus       474 ~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d---~-vq~~A~~~L~~l  516 (576)
                      ++    .++.++|++.||+++|++||+..|   . +...|+.+|.++
T Consensus       738 ~s----~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l  780 (810)
T 3now_A          738 AG----EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA  780 (810)
T ss_dssp             TC----HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred             CC----HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence            43    689999999999999999997652   3 555677777776

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.95  E-value=5.8e-27  Score=254.73  Aligned_cols=332  Identities=16%  Similarity=0.164  Sum_probs=260.7

Q ss_pred             ccccHHHHHHHHHhhhcc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHh
Q 041643          117 TNADFKKVFSLLESSIGD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMG-QIKSRVDAANELASLA  190 (576)
Q Consensus       117 ~~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G-~~e~k~~AA~~L~~La  190 (576)
                      ..+.++.|+.+|....-+     +..|.+++..+...   ..+...   ...+..++..|+.+ +.+.+..|+.+|.+|+
T Consensus        15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~---~~~~~~---~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls   88 (529)
T 1jdh_A           15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR---HAIMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLS   88 (529)
T ss_dssp             --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH---HHHHTC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH---HHHHhC---cchHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            568899999998642211     33444444422100   001001   01233447888877 8899999999999999


Q ss_pred             hcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHH
Q 041643          191 RDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANL  269 (576)
Q Consensus       191 ~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~a  269 (576)
                      .+ ++++..|++.|+||+|+++|++++ +..|+.|+++|.||+.+ ++.+..+++.|++|.|+++|++++.+++..++.+
T Consensus        89 ~~-~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~  166 (529)
T 1jdh_A           89 HH-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC  166 (529)
T ss_dssp             TS-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred             cC-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            86 679999999999999999999998 99999999999999996 5667788899999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCc
Q 041643          270 VARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYN  349 (576)
Q Consensus       270 L~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  349 (576)
                      |.+++..+++++..+.+.|++++|+.+|++++                                                
T Consensus       167 L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~------------------------------------------------  198 (529)
T 1jdh_A          167 LQILAYGNQESKLIILASGGPQALVNIMRTYT------------------------------------------------  198 (529)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC------------------------------------------------
T ss_pred             HHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC------------------------------------------------
Confidence            99999888999999999999999999996531                                                


Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHH
Q 041643          350 KKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIR  429 (576)
Q Consensus       350 ~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~  429 (576)
                             ++    ..+..++.+||+|+.+..           .|....      ..++++.|+.++.+++ +.++..+++
T Consensus       199 -------~~----~~~~~a~~~L~~l~~~~~-----------~~~~~~------~~g~~~~L~~ll~~~~-~~~~~~a~~  249 (529)
T 1jdh_A          199 -------YE----KLLWTTSRVLKVLSVCSS-----------NKPAIV------EAGGMQALGLHLTDPS-QRLVQNCLW  249 (529)
T ss_dssp             -------CH----HHHHHHHHHHHHHTTSTT-----------HHHHHH------HTTHHHHHHTTTTSSC-HHHHHHHHH
T ss_pred             -------hH----HHHHHHHHHHHHHhcCcc-----------cHHHHH------HCCCHHHHHHHHhCCC-hHHHHHHHH
Confidence                   01    134678999999996532           222111      1257899999998765 889999999


Q ss_pred             HHHHHhcCCchh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhcc-Ch-h-
Q 041643          430 SIGCLAKTFPAK--EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKI-SD-R-  504 (576)
Q Consensus       430 aLgnLa~~~~~~--~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~-~d-~-  504 (576)
                      +|+||++..+..  ..+++|.|+++|++.+++++..|+|+|++++..+    +++++.+.+.||++.|+++|.. ++ . 
T Consensus       250 ~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~----~~~~~~~~~~~~v~~L~~ll~~~~~~~~  325 (529)
T 1jdh_A          250 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRTVLRAGDRED  325 (529)
T ss_dssp             HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC----HHHHHHHHHTTHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC----HHHHHHHHHcCChHHHHHHHHccCCHHH
Confidence            999999865432  2368999999999999999999999999998642    6889999999999999999975 33 3 


Q ss_pred             HHHHHHHHHHHHhcccCc----hHHHHhccchhhHhh
Q 041643          505 AQVHGLVFLCYLALSAGN----SKALEQARALNALEG  537 (576)
Q Consensus       505 vq~~A~~~L~~lal~~~~----~~~l~~~~~l~~Le~  537 (576)
                      ++..|+.+|++++.+.++    ...+.+.|+++.|..
T Consensus       326 v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~  362 (529)
T 1jdh_A          326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK  362 (529)
T ss_dssp             HHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHH
Confidence            889999999999876554    347788999999873

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=261.32  Aligned_cols=369  Identities=15%  Similarity=0.149  Sum_probs=252.9

Q ss_pred             ccccccHHHHHHHHHhhhcc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 041643          115 ITTNADFKKVFSLLESSIGD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASL  189 (576)
Q Consensus       115 i~~~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~L  189 (576)
                      |...+.++.|+.+|.+...+     +..|.+++.......  ..+...+    .+..++..|++++.+.+..++.+|.+|
T Consensus        94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~--~~v~~~g----~i~~Lv~lL~~~~~~~~~~a~~~L~~L  167 (644)
T 2z6h_A           94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK--MAVRLAG----GLQKMVALLNKTNVKFLAITTDCLQIL  167 (644)
T ss_dssp             HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH--HHHHHTT----HHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH--HHHHHCC----ChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence            45679999999999653322     233344443210000  0011111    233348899999988888888899999


Q ss_pred             hhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhH-------
Q 041643          190 ARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKV-------  262 (576)
Q Consensus       190 a~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~v-------  262 (576)
                      +..+++++..+++.|+|++|+++|++++....++.++.+|.||+.+++++..++++|+++.|+++|++++..+       
T Consensus       168 a~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~  247 (644)
T 2z6h_A          168 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT  247 (644)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            9877899999999999999999999887578899999999999999999999999999998888776654444       


Q ss_pred             --------------------------------HHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchh
Q 041643          263 --------------------------------QVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPES  310 (576)
Q Consensus       263 --------------------------------q~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~  310 (576)
                                                      ++.|+|+|.+|+.+++..+..+.+.|+|+.|+.+|...          
T Consensus       248 L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~----------  317 (644)
T 2z6h_A          248 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA----------  317 (644)
T ss_dssp             HHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH----------
T ss_pred             HHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHcc----------
Confidence                                            44455555555544445555555555555555555321          


Q ss_pred             hhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccch
Q 041643          311 AKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNA  390 (576)
Q Consensus       311 ~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~  390 (576)
                                                                  .+.++    ++..|+++|++|+.++.+.       .
T Consensus       318 --------------------------------------------~~~~~----v~~~a~~aL~nL~~~~~~~-------~  342 (644)
T 2z6h_A          318 --------------------------------------------GDRED----ITEPAICALRHLTSRHQEA-------E  342 (644)
T ss_dssp             --------------------------------------------TTCHH----HHHHHHHHHHHHTSSSTTH-------H
T ss_pred             --------------------------------------------CCcHH----HHHHHHHHHHHHhcCCchH-------H
Confidence                                                        00123    4678999999998754321       0


Q ss_pred             HHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhcCCCHHHHHHHHH
Q 041643          391 ELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSNRNVDVATEAVI  466 (576)
Q Consensus       391 ~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~~~~~~V~~eAa~  466 (576)
                      ..|...++      .++++.|+++|.+.+++.++..|+++|+||+......    +.++||+|+++|.+.+.+++++|+|
T Consensus       343 ~~q~~v~~------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~  416 (644)
T 2z6h_A          343 MAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM  416 (644)
T ss_dssp             HHHHHHHH------TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHH------ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhh
Confidence            11211111      2468999999987654689999999999999754432    4589999999998876666666666


Q ss_pred             HHHh--hcCCCCC---------------CCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHh
Q 041643          467 ALSK--FVSPDNF---------------NRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQ  528 (576)
Q Consensus       467 AL~n--la~~~n~---------------~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~  528 (576)
                      +++|  ++.+++.               .+.+++..+.+.|++++|+++|..++. ++..|+.+|++++.+.+....+.+
T Consensus       417 al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~  496 (644)
T 2z6h_A          417 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA  496 (644)
T ss_dssp             -------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             ccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            6655  3322110               013455788899999999999998877 999999999999877666788889


Q ss_pred             ccchhhHhhhhcccCCCCCcHHHH------------------HHH--HHHHHHhhcCC
Q 041643          529 ARALNALEGAARTVLPQHPELRDL------------------FAQ--AIYHLTLYQAG  566 (576)
Q Consensus       529 ~~~l~~Le~~~~~~~~q~~~~~~l------------------~~~--a~~~l~~y~~~  566 (576)
                      .|+++.|+.+.      ++.+.++                  |.+  +..+++.||..
T Consensus       497 ~g~l~~L~~ll------~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~  548 (644)
T 2z6h_A          497 EGATAPLTELL------HSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRT  548 (644)
T ss_dssp             TTCHHHHHHHT------TCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCC
T ss_pred             cCChhHHHHHH------cCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhC
Confidence            99999987442      2333334                  666  78888988873

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.95  E-value=4.2e-27  Score=248.32  Aligned_cols=262  Identities=15%  Similarity=0.130  Sum_probs=205.3

Q ss_pred             hHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcC-----------CChhHHHHHHHHHHHHhcCChHHHHHHHhc
Q 041643          219 PDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGE-----------APVKVQVAVANLVARMAELDSIAQEEFVRE  287 (576)
Q Consensus       219 ~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s-----------~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~  287 (576)
                      ...+..|+|+|.||+.++++|..|++.|++++|+.+|.+           .+.++|..|+|+|.||+.+++..|..+...
T Consensus        46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            456679999999999999999999999999999999952           236799999999999999888888888655


Q ss_pred             -CCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHH
Q 041643          288 -NVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRI  366 (576)
Q Consensus       288 -g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~  366 (576)
                       |+||+||.+|+++                                                        |++    +++
T Consensus       126 ~GaIp~LV~LL~s~--------------------------------------------------------~~~----v~~  145 (354)
T 3nmw_A          126 KGCMRALVAQLKSE--------------------------------------------------------SED----LQQ  145 (354)
T ss_dssp             HHHHHHHHHGGGCS--------------------------------------------------------CHH----HHH
T ss_pred             CCcHHHHHHHHCCC--------------------------------------------------------CHH----HHH
Confidence             5699999999643                                                        222    468


Q ss_pred             HHHHHHHHhhcC-CcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----
Q 041643          367 ACAEALWKLSKG-CLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----  440 (576)
Q Consensus       367 ~Aa~ALw~La~g-~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----  440 (576)
                      .|++||++|+.+ +..          .|....      ..++|+.|+++|.++.++.++.+|+++|+||+...++     
T Consensus       146 ~A~~aL~nLs~~~~~~----------~k~~i~------~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i  209 (354)
T 3nmw_A          146 VIASVLRNLSWRADVN----------SKKTLR------EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI  209 (354)
T ss_dssp             HHHHHHHHHHTTCCHH----------HHHHHH------HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhccCCHH----------HHHHHH------HCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHH
Confidence            899999999986 322          222111      1257899999765444588999999999999973322     


Q ss_pred             h-hhCcHHHHHHhhcCCCH----HHHHHHHHHHHhhcC--CCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHH
Q 041643          441 K-EKRMIGPLVALLSNRNV----DVATEAVIALSKFVS--PDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVF  512 (576)
Q Consensus       441 ~-~~~~I~~LV~LL~~~~~----~V~~eAa~AL~nla~--~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~  512 (576)
                      . ..|+||+||++|++++.    +++++|+|+|.|++.  .+   ++++++.|++.|++++|++||++++. +|..|+++
T Consensus       210 ~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a  286 (354)
T 3nmw_A          210 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT---NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT  286 (354)
T ss_dssp             HHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccC---CHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence            1 45899999999987654    599999999999984  11   26889999999999999999998877 99999999


Q ss_pred             HHHHhc-ccCchHHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHHHHh
Q 041643          513 LCYLAL-SAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTL  562 (576)
Q Consensus       513 L~~lal-~~~~~~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~  562 (576)
                      |++++. +..+...+.++|++++|..+.+..   +...++-...|+..|..
T Consensus       287 L~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~---~~~i~~~A~~aL~nL~~  334 (354)
T 3nmw_A          287 LWNLSARNPKDQEALWDMGAVSMLKNLIHSK---HKMIAMGSAAALRNLMA  334 (354)
T ss_dssp             HHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS---SHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHc
Confidence            999984 566678899999999998543222   33444545555555543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=2e-25  Score=218.46  Aligned_cols=239  Identities=28%  Similarity=0.323  Sum_probs=209.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHH
Q 041643          165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIV  243 (576)
Q Consensus       165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv  243 (576)
                      ..++..|++++.+.|..|+..|.+++..+++++..+++.|+||+|+++|++++ +..|..|+++|.+|+.+ ++++..++
T Consensus         5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~   83 (252)
T 4hxt_A            5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIV   83 (252)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34588999999999999999999999887779999999999999999999998 99999999999999997 78899999


Q ss_pred             HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhc
Q 041643          244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK  323 (576)
Q Consensus       244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~  323 (576)
                      +.|++|.|+++|++++.+++..|+++|++|+..+++.+..+.+.|+++.|+.+|+++                       
T Consensus        84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-----------------------  140 (252)
T 4hxt_A           84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-----------------------  140 (252)
T ss_dssp             HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-----------------------
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-----------------------
Confidence            999999999999999999999999999999988899999999999999999999532                       


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchh
Q 041643          324 EMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPA  403 (576)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a  403 (576)
                                                       |++    ++..|+++|++|+.++..+          +          
T Consensus       141 ---------------------------------~~~----~~~~a~~~L~~l~~~~~~~----------~----------  163 (252)
T 4hxt_A          141 ---------------------------------DSE----VQKEAARALANIASGPDEA----------I----------  163 (252)
T ss_dssp             ---------------------------------CHH----HHHHHHHHHHHHTTSCHHH----------H----------
T ss_pred             ---------------------------------CHH----HHHHHHHHHHHHHcCCHHH----------H----------
Confidence                                             222    4578999999998764210          0          


Q ss_pred             HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHH
Q 041643          404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHS  483 (576)
Q Consensus       404 ~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~  483 (576)
                           ..+                             .+.+++|.|+.+|++.+++++..|+|+|++++..    +++++
T Consensus       164 -----~~~-----------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~  205 (252)
T 4hxt_A          164 -----KAI-----------------------------VDAGGVEVLVKLLTSTDSEVQKEAARALANIASG----PTSAI  205 (252)
T ss_dssp             -----HHH-----------------------------HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----BHHHH
T ss_pred             -----HHH-----------------------------HHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHHHH
Confidence                 001                             1346899999999999999999999999999863    26889


Q ss_pred             HHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCc
Q 041643          484 KAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGN  522 (576)
Q Consensus       484 ~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~  522 (576)
                      +.+.+.|+++.|++++++++. ++..|+++|+++..+.++
T Consensus       206 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          206 KAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred             HHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence            999999999999999998877 999999999999866554

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.94  E-value=2.2e-25  Score=251.22  Aligned_cols=333  Identities=16%  Similarity=0.164  Sum_probs=261.3

Q ss_pred             cccccHHHHHHHHHhhhcc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 041643          116 TTNADFKKVFSLLESSIGD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMG-QIKSRVDAANELASL  189 (576)
Q Consensus       116 ~~~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G-~~e~k~~AA~~L~~L  189 (576)
                      +..+.++.|+.+|....-.     +..|.+++.......   .+....   ..+..++..|+++ +.+.+..|+.+|.+|
T Consensus        11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~---~i~~~~---~~i~~Lv~~L~~~~~~~~~~~A~~~L~~L   84 (644)
T 2z6h_A           11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH---AIMRSP---QMVSAIVRTMQNTNDVETARCTAGTLHNL   84 (644)
T ss_dssp             -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHH---HHTTCH---HHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHH---HHHhcc---ChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            3578899999999642221     344445544221100   011111   1234457888887 899999999999999


Q ss_pred             hhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHH
Q 041643          190 ARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVAN  268 (576)
Q Consensus       190 a~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~  268 (576)
                      +.. ++++..|++.|+||+|+++|++++ +..|+.|+++|.||+.+ ++.+..+++.|++|.|+++|++++.+++..++.
T Consensus        85 s~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~  162 (644)
T 2z6h_A           85 SHH-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD  162 (644)
T ss_dssp             TTS-HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred             hcC-hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHH
Confidence            986 679999999999999999999988 99999999999999986 466778889999999999999998888888888


Q ss_pred             HHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCC
Q 041643          269 LVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHY  348 (576)
Q Consensus       269 aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  348 (576)
                      +|.+|+..+++.+..+.+.|+|+.|+.+|++++                                               
T Consensus       163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----------------------------------------------  195 (644)
T 2z6h_A          163 CLQILAYGNQESKLIILASGGPQALVNIMRTYT-----------------------------------------------  195 (644)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-----------------------------------------------
T ss_pred             HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-----------------------------------------------
Confidence            999999878899999999999999999996431                                               


Q ss_pred             cccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHH
Q 041643          349 NKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAI  428 (576)
Q Consensus       349 ~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~  428 (576)
                              ++    .++..++.+||+|+.+..           .|+..+.      .++++.|+.++.+.+ +.++..++
T Consensus       196 --------~~----~~~~~a~~~L~nLs~~~~-----------~~~~l~~------~g~l~~L~~ll~~~~-~~~~~~a~  245 (644)
T 2z6h_A          196 --------YE----KLLWTTSRVLKVLSVCSS-----------NKPAIVE------AGGMQALGLHLTDPS-QRLVQNCL  245 (644)
T ss_dssp             --------CH----HHHHHHHHHHHHHTTCTT-----------HHHHHHH------TTHHHHHHTTTTCSC-HHHHHHHH
T ss_pred             --------hH----HHHHHHHHHHHHHhcCcc-----------cHHHHHH------CCCHHHHHHHHhcCC-HHHHHHHH
Confidence                    11    134679999999996532           2322211      257899999998765 88999999


Q ss_pred             HHHHHHhcCCchh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhcc-Ch--
Q 041643          429 RSIGCLAKTFPAK--EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKI-SD--  503 (576)
Q Consensus       429 ~aLgnLa~~~~~~--~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~-~d--  503 (576)
                      ++|+||++..+..  ..+++|.|+++|++.+.++++.|+|+|++++...    .++++.+.+.|+++.|+++|.. ++  
T Consensus       246 ~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~----~~~~~~v~~~g~v~~Lv~lL~~~~~~~  321 (644)
T 2z6h_A          246 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRTVLRAGDRE  321 (644)
T ss_dssp             HHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC----HHHHHHHHHcCCHHHHHHHHHccCCcH
Confidence            9999999765432  2368999999999999999999999999998643    5889999999999999999986 33  


Q ss_pred             hHHHHHHHHHHHHhcccCch----HHHHhccchhhHhh
Q 041643          504 RAQVHGLVFLCYLALSAGNS----KALEQARALNALEG  537 (576)
Q Consensus       504 ~vq~~A~~~L~~lal~~~~~----~~l~~~~~l~~Le~  537 (576)
                      .++..|+.+|++++.+.++.    ..+...|+++.|..
T Consensus       322 ~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~  359 (644)
T 2z6h_A          322 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK  359 (644)
T ss_dssp             HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHH
Confidence            38999999999998654542    34667899999873

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=7e-26  Score=223.46  Aligned_cols=234  Identities=19%  Similarity=0.259  Sum_probs=201.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHH
Q 041643          166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVD  244 (576)
Q Consensus       166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~  244 (576)
                      .++..|++++.+.+..|+..|.++...++++++.+++.|+||+|+++|++++ +..|..|+++|.||+. +++++..+++
T Consensus        16 ~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~   94 (252)
T 4db8_A           16 QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVID   94 (252)
T ss_dssp             HHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3478999999999999999997766656788999999999999999999998 9999999999999998 6788999999


Q ss_pred             cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643          245 VLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE  324 (576)
Q Consensus       245 ~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~  324 (576)
                      .|++|.|+++|++++.+++..|+|+|++|+.+++.....+.+.|+|+.|+.+|.++                        
T Consensus        95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~------------------------  150 (252)
T 4db8_A           95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP------------------------  150 (252)
T ss_dssp             TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS------------------------
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC------------------------
Confidence            99999999999999999999999999999987655548899999999999999532                        


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhH
Q 041643          325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAA  404 (576)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~  404 (576)
                                                      |++    ++..|+++|++|+.++.++                      
T Consensus       151 --------------------------------~~~----v~~~a~~~L~~l~~~~~~~----------------------  172 (252)
T 4db8_A          151 --------------------------------NEQ----ILQEALWALSNIASGGNEQ----------------------  172 (252)
T ss_dssp             --------------------------------CHH----HHHHHHHHHHHHTTSCHHH----------------------
T ss_pred             --------------------------------CHH----HHHHHHHHHHHHHcCChHH----------------------
Confidence                                            222    4578999999998764210                      


Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 041643          405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSK  484 (576)
Q Consensus       405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~  484 (576)
                         ...+                             .+.+++|+|+++|++.++++++.|+|+|++++..    ++++++
T Consensus       173 ---~~~~-----------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~  216 (252)
T 4db8_A          173 ---IQAV-----------------------------IDAGALPALVQLLSSPNEQILQEALWALSNIASG----GNEQKQ  216 (252)
T ss_dssp             ---HHHH-----------------------------HHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS----CHHHHH
T ss_pred             ---HHHH-----------------------------HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC----CHHHHH
Confidence               0001                             1347899999999999999999999999999853    268899


Q ss_pred             HHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhc
Q 041643          485 AIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLAL  518 (576)
Q Consensus       485 ~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal  518 (576)
                      .+++.|+++.|+++|.+++. ++..|+++|++++.
T Consensus       217 ~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          217 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999998877 99999999998863

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.93  E-value=5.1e-25  Score=254.35  Aligned_cols=342  Identities=16%  Similarity=0.151  Sum_probs=241.0

Q ss_pred             ccccccHHHHHHHHHhhhcc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 041643          115 ITTNADFKKVFSLLESSIGD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASL  189 (576)
Q Consensus       115 i~~~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~L  189 (576)
                      |...+.++.|+.+|......     +..|.+++.......  ..+...+    .+..++.+|+.++.+.+..++.+|.+|
T Consensus       230 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~--~~v~~~g----~v~~Lv~lL~~~~~~v~~~a~~aL~~L  303 (780)
T 2z6g_A          230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK--MAVRLAG----GLQKMVALLNKTNVKFLAITTDCLQIL  303 (780)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH--HHHHHTT----HHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH--HHHHHcC----CHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            44678999999999653222     334444543210000  0000111    233348889999999999999999999


Q ss_pred             hhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHH---
Q 041643          190 ARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAV---  266 (576)
Q Consensus       190 a~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~A---  266 (576)
                      +..+++++..+++.|+|++|+++|++++....++.|+.+|.+|+.+++++..++++|+++.|+.+|.+++..++..+   
T Consensus       304 a~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~  383 (780)
T 2z6g_A          304 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT  383 (780)
T ss_dssp             HTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHH
Confidence            98778999999999999999999999875667789999999999999999999999988888877766554444444   


Q ss_pred             ------------------------------------HHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchh
Q 041643          267 ------------------------------------ANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPES  310 (576)
Q Consensus       267 ------------------------------------a~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~  310 (576)
                                                          +|+|++|+.++++.+..+.+.|+|+.|+.+|...          
T Consensus       384 L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~----------  453 (780)
T 2z6g_A          384 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA----------  453 (780)
T ss_dssp             HHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHH----------
T ss_pred             HHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHcc----------
Confidence                                                4455555444444455555555555555555321          


Q ss_pred             hhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccch
Q 041643          311 AKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNA  390 (576)
Q Consensus       311 ~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~  390 (576)
                                                                   .++   ..++..|+++|++|+.++.+.       .
T Consensus       454 ---------------------------------------------~~~---~~v~~~Al~aL~nL~~~~~~~-------~  478 (780)
T 2z6g_A          454 ---------------------------------------------GDR---EDITEPAICALRHLTSRHQDA-------E  478 (780)
T ss_dssp             ---------------------------------------------TTC---HHHHHHHHHHHHHTTSSSTTH-------H
T ss_pred             ---------------------------------------------CCH---HHHHHHHHHHHHHHHhcCchH-------H
Confidence                                                         111   024678999999998764331       0


Q ss_pred             HHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhcCCCHHHHHHHHH
Q 041643          391 ELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSNRNVDVATEAVI  466 (576)
Q Consensus       391 ~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~~~~~~V~~eAa~  466 (576)
                      ..|....      ..++++.|+++|.+.+.+.++..|+.+|+||+......    +.++||+|+++|++++.+++++|+|
T Consensus       479 ~~~~~v~------~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~  552 (780)
T 2z6g_A          479 MAQNAVR------LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM  552 (780)
T ss_dssp             HHHHHHH------HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHH------HcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhh
Confidence            1121111      12458899999987764589999999999999754332    4588999999998766555555544


Q ss_pred             ----------------------HHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch
Q 041643          467 ----------------------ALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS  523 (576)
Q Consensus       467 ----------------------AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~  523 (576)
                                            +|++++.     +++++..|.+.|++++|++||++++. ++..|+.+|++++.+.+..
T Consensus       553 al~nq~~~~~~~~~~v~~~a~~aL~~La~-----~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~  627 (780)
T 2z6g_A          553 GGTQQQFVEGVRMEEIVEACTGALHILAR-----DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA  627 (780)
T ss_dssp             -----CCSTTCCHHHHHHHHHHHHHHHTT-----SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHH
T ss_pred             ccccchhhcccChHHHHHHHHHHHHHHhc-----ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHH
Confidence                                  5555553     24666779999999999999998877 9999999999998776777


Q ss_pred             HHHHhccchhhHhhh
Q 041643          524 KALEQARALNALEGA  538 (576)
Q Consensus       524 ~~l~~~~~l~~Le~~  538 (576)
                      ..|.+.|+++.|+.+
T Consensus       628 ~~i~~~g~i~~L~~L  642 (780)
T 2z6g_A          628 EAIEAEGATAPLTEL  642 (780)
T ss_dssp             HHHHHTTCHHHHHHG
T ss_pred             HHHHHCCCHHHHHHH
Confidence            889999999998743

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.93  E-value=6.1e-24  Score=245.38  Aligned_cols=332  Identities=15%  Similarity=0.166  Sum_probs=261.6

Q ss_pred             ccccHHHHHHHHHhhhcc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHh
Q 041643          117 TNADFKKVFSLLESSIGD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMG-QIKSRVDAANELASLA  190 (576)
Q Consensus       117 ~~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G-~~e~k~~AA~~L~~La  190 (576)
                      ..+.++.|+.+|......     +..|.+++.......   .+...   ...+..++..|+.+ +.+.|..|+.+|.+|+
T Consensus       148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~---~i~~~---~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls  221 (780)
T 2z6g_A          148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH---AIMRS---PQMVSAIVRTMQNTNDVETARCTSGTLHNLS  221 (780)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH---HHTTC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH---HHHhc---cChHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            478999999999642211     344455554321100   01111   01244457888877 8999999999999999


Q ss_pred             hcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHH
Q 041643          191 RDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANL  269 (576)
Q Consensus       191 ~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~a  269 (576)
                      .. +.++..|++.|+||+|+++|++++ +.+|+.|+++|.||+.+ ++.+..+++.|+||.|+++|++++.+++..++.+
T Consensus       222 ~~-~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~a  299 (780)
T 2z6g_A          222 HH-REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC  299 (780)
T ss_dssp             TS-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred             CC-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            86 678999999999999999999998 99999999999999996 5667778899999999999999989999999999


Q ss_pred             HHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCc
Q 041643          270 VARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYN  349 (576)
Q Consensus       270 L~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  349 (576)
                      |.+++..+++.+..+.+.|+++.|+.+|+.++                                                
T Consensus       300 L~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~------------------------------------------------  331 (780)
T 2z6g_A          300 LQILAYGNQESKLIILASGGPQALVNIMRTYT------------------------------------------------  331 (780)
T ss_dssp             HHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC------------------------------------------------
T ss_pred             HHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC------------------------------------------------
Confidence            99999878899999999999999999996431                                                


Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHH
Q 041643          350 KKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIR  429 (576)
Q Consensus       350 ~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~  429 (576)
                             + +   ..+..++.+||+|+....           .|....      ..++++.|+.++.+.+ +.++..|+.
T Consensus       332 -------~-~---~~~~~a~~aL~~Ls~~~~-----------~~~~i~------~~g~l~~Ll~lL~~~~-~~~~~~a~~  382 (780)
T 2z6g_A          332 -------Y-E---KLLWTTSRVLKVLSVCSS-----------NKPAIV------EAGGMQALGLHLTDPS-QRLVQNCLW  382 (780)
T ss_dssp             -------C-H---HHHHHHHHHHHHHHTSTT-----------HHHHHH------HTTHHHHHGGGTTCSC-HHHHHHHHH
T ss_pred             -------H-H---HHHHHHHHHHHHhhcChH-----------HHHHHH------HhchHHHHHHHHcCCc-hHHHHHHHH
Confidence                   0 1   134678999999996432           122111      1257899999998765 789999999


Q ss_pred             HHHHHhcCCchh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhcc-Ch--h
Q 041643          430 SIGCLAKTFPAK--EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKI-SD--R  504 (576)
Q Consensus       430 aLgnLa~~~~~~--~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~-~d--~  504 (576)
                      +|.||++.....  ..++||+|+.+|++.+.+++..|+|+|++++...    .++++.+++.||++.|+++|.. ++  .
T Consensus       383 ~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~----~~~~~~i~~~g~i~~Lv~lL~~~~~~~~  458 (780)
T 2z6g_A          383 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRTVLRAGDRED  458 (780)
T ss_dssp             HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC----HHHHHHHHTTTHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC----HHHHHHHHHCCCHHHHHHHHHccCCHHH
Confidence            999999765431  2468999999999999999999999999998643    5889999999999999999975 33  4


Q ss_pred             HHHHHHHHHHHHhcccCch----HHHHhccchhhHhh
Q 041643          505 AQVHGLVFLCYLALSAGNS----KALEQARALNALEG  537 (576)
Q Consensus       505 vq~~A~~~L~~lal~~~~~----~~l~~~~~l~~Le~  537 (576)
                      ++..|+++|++|+.+.++.    ..+...++++.|..
T Consensus       459 v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~  495 (780)
T 2z6g_A          459 ITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVK  495 (780)
T ss_dssp             HHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHH
Confidence            8899999999998655553    36778899999873

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.93  E-value=8.5e-25  Score=225.30  Aligned_cols=228  Identities=17%  Similarity=0.165  Sum_probs=186.8

Q ss_pred             hHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHH-hhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhh
Q 041643          219 PDAQTAAANALFNIATDQETVRFIVDVLGVPIIVS-VLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL  297 (576)
Q Consensus       219 ~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~-lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL  297 (576)
                      .+.+..|+..|.++..+.++...+++.|++|+|+. +|++++++++++|+|+|++++.+++.+|+.+.+.|++|+|+.+|
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            67889999999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhc
Q 041643          298 CMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSK  377 (576)
Q Consensus       298 ~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~  377 (576)
                      ++++                                                       ++    .++..|+|||++|+.
T Consensus       134 ~~~~-------------------------------------------------------~~----~v~~~A~~ALsnl~~  154 (296)
T 1xqr_A          134 DRDA-------------------------------------------------------CD----TVRVKALFAISCLVR  154 (296)
T ss_dssp             HHCS-------------------------------------------------------CH----HHHHHHHHHHHHHHT
T ss_pred             ccCC-------------------------------------------------------CH----HHHHHHHHHHHHHHc
Confidence            6431                                                       12    246789999999987


Q ss_pred             CCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCC
Q 041643          378 GCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRN  457 (576)
Q Consensus       378 g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~  457 (576)
                      |+...                         .+.+                             .+.++||+|+.+|++++
T Consensus       155 ~~~~~-------------------------~~~~-----------------------------~~~ggi~~L~~lL~~~d  180 (296)
T 1xqr_A          155 EQEAG-------------------------LLQF-----------------------------LRLDGFSVLMRAMQQQV  180 (296)
T ss_dssp             TCHHH-------------------------HHHH-----------------------------HHTTHHHHHHHHHHSSC
T ss_pred             CCcHH-------------------------HHHH-----------------------------HHCCCHHHHHHHHcCCC
Confidence            74210                         0001                             12467999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHhcc---chh
Q 041643          458 VDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQAR---ALN  533 (576)
Q Consensus       458 ~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~---~l~  533 (576)
                      +.++++|+|+|++++.+.    +++++.+++.|++++|+.||.+++. +|..|+.+|++|+...+........+   ...
T Consensus       181 ~~v~~~A~~aLs~L~~~~----~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~  256 (296)
T 1xqr_A          181 QKLKVKSAFLLQNLLVGH----PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEE  256 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHC----GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHH
T ss_pred             HHHHHHHHHHHHHHHhCC----hHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHH
Confidence            999999999999998653    5889999999999999999998887 99999999999976533322332332   233


Q ss_pred             hHhhhhcccCCCCCc-HHHHHHHHHHHHHhhcC
Q 041643          534 ALEGAARTVLPQHPE-LRDLFAQAIYHLTLYQA  565 (576)
Q Consensus       534 ~Le~~~~~~~~q~~~-~~~l~~~a~~~l~~y~~  565 (576)
                      .|+.  +++.+|.|+ ++++|+++..+++.||+
T Consensus       257 lL~~--~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          257 LLRH--RCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHH--HHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHH--HHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            3442  234567555 89999999999999997

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.92  E-value=8.1e-24  Score=231.79  Aligned_cols=361  Identities=14%  Similarity=0.143  Sum_probs=255.0

Q ss_pred             ccccccHHHHHHHHHhhh-cc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041643          115 ITTNADFKKVFSLLESSI-GD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELAS  188 (576)
Q Consensus       115 i~~~~~l~~l~~~L~~~~-~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~  188 (576)
                      ++..+.++.|+.+|.... .+     +..|-+++..+....  ..+...+.    +-.++.+|++++.+.+..|+++|.+
T Consensus       113 ~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~--~~~~~~g~----i~~L~~lL~~~~~~v~~~a~~aL~~  186 (528)
T 4b8j_A          113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT--KVVIDHGA----VPIFVKLLGSSSDDVREQAVWALGN  186 (528)
T ss_dssp             HHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH--HHHHHTTH----HHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH--HHHHhCCc----HHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            457899999999996543 22     223334443210000  00111112    2233789999999999999999999


Q ss_pred             HhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHH
Q 041643          189 LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVAN  268 (576)
Q Consensus       189 La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~  268 (576)
                      |+.+++.++..+.+.|+||+|+++|..+.++..+.+|+|+|.+|+.+.......+..|++|.|+++|.+++.+++..++|
T Consensus       187 l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  266 (528)
T 4b8j_A          187 VAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACW  266 (528)
T ss_dssp             HHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            99887888999999999999999995443399999999999999997655556667999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCC
Q 041643          269 LVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHY  348 (576)
Q Consensus       269 aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  348 (576)
                      +|++|+...+...+.+.+.|+++.|+.+|.++..   .-......++.++...........         +  ..|+++.
T Consensus       267 aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~---~v~~~a~~~L~nl~~~~~~~~~~~---------~--~~~~l~~  332 (528)
T 4b8j_A          267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP---SVLIPALRTVGNIVTGDDAQTQCI---------I--DHQALPC  332 (528)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCH---HHHHHHHHHHHHHTTSCHHHHHHH---------H--TTTHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCCh---hHHHHHHHHHHHHHcCCHHHHHHH---------H--HhhhHHH
Confidence            9999998877777888999999999999976520   000001112222211000000000         0  0123343


Q ss_pred             cccccccC-CHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHH
Q 041643          349 NKKDRELE-TPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPA  427 (576)
Q Consensus       349 ~~~~~e~~-d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a  427 (576)
                      +....... ++.+    +..|+|+|++|+.++.+.          ++..+.      .++++.|+.+|.+++ +.++..|
T Consensus       333 L~~lL~~~~~~~v----~~~A~~~L~nl~~~~~~~----------~~~~~~------~~~i~~L~~lL~~~~-~~v~~~a  391 (528)
T 4b8j_A          333 LLSLLTQNLKKSI----KKEACWTISNITAGNKDQ----------IQAVIN------AGIIGPLVNLLQTAE-FDIKKEA  391 (528)
T ss_dssp             HHHHHHSCCCHHH----HHHHHHHHHHHHTSCHHH----------HHHHHH------TTCHHHHHHHHHHSC-HHHHHHH
T ss_pred             HHHHHcCCCcHHH----HHHHHHHHHHHHCCCHHH----------HHHHHH------CCCHHHHHHHHhcCC-HHHHHHH
Confidence            22223333 5554    578999999999875432          111111      246889999998875 8999999


Q ss_pred             HHHHHHHhcCCc-h-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCC-------CCHHHHHHHHHCCCcHh
Q 041643          428 IRSIGCLAKTFP-A-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNF-------NRSEHSKAIIEFDGVPP  494 (576)
Q Consensus       428 ~~aLgnLa~~~~-~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~-------~~~~~~~~Iv~~ggi~~  494 (576)
                      +.+|+|++.... .     .+.++|++|+.+|.+.+.+++..|.++|.++...+..       ........|.+.||+..
T Consensus       392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  471 (528)
T 4b8j_A          392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEK  471 (528)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHH
Confidence            999999997632 2     1358999999999999999999999999999742200       00124678899999999


Q ss_pred             HHHhhccChh-HHHHHHHHHHHH
Q 041643          495 LMRLLKISDR-AQVHGLVFLCYL  516 (576)
Q Consensus       495 Lv~LL~~~d~-vq~~A~~~L~~l  516 (576)
                      |..|.++.+. ++..|..++-.+
T Consensus       472 l~~L~~~~~~~v~~~a~~il~~~  494 (528)
T 4b8j_A          472 IENLQSHDNNEIYEKAVKILEAY  494 (528)
T ss_dssp             HHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHH
Confidence            9999988776 888888888766

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.91  E-value=2.2e-24  Score=214.78  Aligned_cols=209  Identities=18%  Similarity=0.217  Sum_probs=166.7

Q ss_pred             HHHHHHHHHhcCCH--HHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchH
Q 041643          163 WVWSFISTIQMGQI--KSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETV  239 (576)
Q Consensus       163 ~v~~li~~L~~G~~--e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~  239 (576)
                      .+..+|..|++++.  +.+..|+..|.+|+..+++++..|++.|+||+||++|++++ ++.|+.|+|||+||+. +++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence            34555899999988  88899999999999888899999999999999999999998 9999999999999998 57899


Q ss_pred             HHHHHcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhc---cccccCCCcchhhhhHH
Q 041643          240 RFIVDVLGVPIIVSVLG-EAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC---MDIALDLPKPESAKTTI  315 (576)
Q Consensus       240 ~~iv~~Gavp~LV~lL~-s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~---~~t~~~~~~~i~~~~si  315 (576)
                      ..|+++||||+||++|+ +++.++|++|+.+|.||+.. +.+|..|.+. +||+|+.+|.   +|...            
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~------------  153 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITE-ALLTLTENIIIPFSGWPE------------  153 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHHH-HHHHHCCCCCHHHHCCCG------------
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHhc-cHHHHHHHHhccccCCcc------------
Confidence            99999999999999997 57899999999999999975 5778888875 6999999874   22100            


Q ss_pred             HHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHh
Q 041643          316 HSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRS  395 (576)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~  395 (576)
                                                   +...  |.....|+++    +++|+++|++||..+.          +-|+.
T Consensus       154 -----------------------------~~~~--~~~~~~~~~v----~~na~~~L~nLss~~~----------~~R~~  188 (233)
T 3tt9_A          154 -----------------------------GDYP--KANGLLDFDI----FYNVTGCLRNMSSAGA----------DGRKA  188 (233)
T ss_dssp             -----------------------------GGCC--CCCTTCCHHH----HHHHHHHHHHHTTSCH----------HHHHH
T ss_pred             -----------------------------cccc--cccccchHHH----HHHHHHHHHHHhcCCH----------HHHHH
Confidence                                         0001  2222346654    5899999999987642          23332


Q ss_pred             hhccCchhHHHHHHHHHHHhhhc-----CChhhHHHHHHHHHHHhc
Q 041643          396 AFKTNSPAAKAVLDQLLRLIHEE-----SDAMLQTPAIRSIGCLAK  436 (576)
Q Consensus       396 a~k~~s~a~~~vV~~Ll~lL~~~-----~~~~lq~~a~~aLgnLa~  436 (576)
                      ...     +.|+|+.|+.+++..     .++..+++|+++|.||+.
T Consensus       189 ~r~-----~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          189 MRR-----CDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             HHT-----STTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             HHH-----CCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence            111     236899999999763     135789999999999974

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.91  E-value=6.2e-23  Score=225.28  Aligned_cols=360  Identities=13%  Similarity=0.147  Sum_probs=255.4

Q ss_pred             ccccccHHHHHHHHHhh-hcc----hHHH-hhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041643          115 ITTNADFKKVFSLLESS-IGD----MRWL-LTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELAS  188 (576)
Q Consensus       115 i~~~~~l~~l~~~L~~~-~~~----~~~l-l~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~  188 (576)
                      ++..+.++.|+..|... ..+    ..|. -++...+....  ..+...+.    +..++.+|++++.+.+..|+++|.+
T Consensus       126 ~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~--~~~~~~g~----i~~Lv~lL~~~~~~vr~~A~~aL~~  199 (530)
T 1wa5_B          126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT--KVVVDADA----VPLFIQLLYTGSVEVKEQAIWALGN  199 (530)
T ss_dssp             HHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH--HHHHHTTC----HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH--HHHHHCCC----HHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            45689999999999653 222    2233 33433210000  00001111    2233788899999999999999999


Q ss_pred             HhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC-chHHHHHHcCCHHHHHHhhcCCChhHHHHHH
Q 041643          189 LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQ-ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVA  267 (576)
Q Consensus       189 La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~-~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa  267 (576)
                      |+.+++.++..+++.|++|+|+++|.+.+ +..+..|+|+|.+|+.+. .........|++|.|+++|.+++..++..++
T Consensus       200 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~  278 (530)
T 1wa5_B          200 VAGDSTDYRDYVLQCNAMEPILGLFNSNK-PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC  278 (530)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHGGGSCC-HHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHH
T ss_pred             HhCCCccchHHHHHcCcHHHHHHHhccCC-HHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHH
Confidence            99887889999999999999999999977 999999999999999875 5556677799999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCc-chhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCC
Q 041643          268 NLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPK-PESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQ  346 (576)
Q Consensus       268 ~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~-~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~  346 (576)
                      |+|.+|+...++.+..+.+.|+++.|+.+|.++.    .. .......+.++...........         +  ..|++
T Consensus       279 ~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~---------~--~~~~l  343 (530)
T 1wa5_B          279 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES----TLVQTPALRAVGNIVTGNDLQTQVV---------I--NAGVL  343 (530)
T ss_dssp             HHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC----HHHHHHHHHHHHHHTTSCHHHHHHH---------H--HTTHH
T ss_pred             HHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC----hhhHHHHHHHHHHHHcCCHHHHHHH---------H--HcchH
Confidence            9999999888888888999999999999997542    10 0000112222111000000000         0  00233


Q ss_pred             CCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHH
Q 041643          347 HYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTP  426 (576)
Q Consensus       347 ~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~  426 (576)
                      +.+.......++.+    +..|+++|++|+.++...          ++..+.      .++++.|+.+|.+++ +.++..
T Consensus       344 ~~L~~lL~~~~~~v----r~~A~~aL~~l~~~~~~~----------~~~~~~------~~~l~~L~~lL~~~~-~~v~~~  402 (530)
T 1wa5_B          344 PALRLLLSSPKENI----KKEACWTISNITAGNTEQ----------IQAVID------ANLIPPLVKLLEVAE-YKTKKE  402 (530)
T ss_dssp             HHHHHHTTCSCHHH----HHHHHHHHHHHTTSCHHH----------HHHHHH------TTCHHHHHHHHHHSC-HHHHHH
T ss_pred             HHHHHHHcCCCHHH----HHHHHHHHHHHHcCCHHH----------HHHHHH------CCCHHHHHHHHhcCC-HHHHHH
Confidence            33222233345554    578999999999875432          221111      246889999998765 899999


Q ss_pred             HHHHHHHHhcCCc---h-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCC-------CCHHHHHHHHHCCC
Q 041643          427 AIRSIGCLAKTFP---A-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNF-------NRSEHSKAIIEFDG  491 (576)
Q Consensus       427 a~~aLgnLa~~~~---~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~-------~~~~~~~~Iv~~gg  491 (576)
                      |+.+|+|++....   .     .+.++||+|+.+|.+.+++++..|+++|.+++.....       ........+.+.||
T Consensus       403 a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~  482 (530)
T 1wa5_B          403 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGG  482 (530)
T ss_dssp             HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTH
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCc
Confidence            9999999987542   1     2457999999999999999999999999999742200       00134577999999


Q ss_pred             cHhHHHhhccChh-HHHHHHHHHHHHh
Q 041643          492 VPPLMRLLKISDR-AQVHGLVFLCYLA  517 (576)
Q Consensus       492 i~~Lv~LL~~~d~-vq~~A~~~L~~la  517 (576)
                      ++.|..|+.+.+. ++..|..+|..+-
T Consensus       483 ~~~L~~L~~~~~~~v~~~a~~il~~~~  509 (530)
T 1wa5_B          483 MEKIFNCQQNENDKIYEKAYKIIETYF  509 (530)
T ss_dssp             HHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence            9999999998877 8889999887773

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.91  E-value=1.1e-22  Score=216.26  Aligned_cols=359  Identities=13%  Similarity=0.106  Sum_probs=251.0

Q ss_pred             ccc-ccHHHHHHHHHhh-hcch----HHHh-hhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041643          116 TTN-ADFKKVFSLLESS-IGDM----RWLL-TIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELAS  188 (576)
Q Consensus       116 ~~~-~~l~~l~~~L~~~-~~~~----~~ll-~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~  188 (576)
                      +.. +.++.|+..|... ..++    .|.+ ++...+....  ..+...+    .+-.++..|++++.+.|..|+.+|.+
T Consensus        60 ~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~----~i~~L~~lL~~~~~~vr~~a~~~L~~  133 (450)
T 2jdq_A           60 ISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT--RIVIQAG----AVPIFIELLSSEFEDVQEQAVWALGN  133 (450)
T ss_dssp             HTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH--HHHHHTT----HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH--HHHHhCC----CHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            345 8899999999654 2221    2222 3333110000  0011111    23344789999999999999999999


Q ss_pred             HhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC--chHHHHHHcCCHHHHHHhhcCCChhHHHHH
Q 041643          189 LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQ--ETVRFIVDVLGVPIIVSVLGEAPVKVQVAV  266 (576)
Q Consensus       189 La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~--~~~~~iv~~Gavp~LV~lL~s~~~~vq~~A  266 (576)
                      ++.+++.++..+++.|++|+|+++|+++.++..+..|+|+|++|+.+.  .....++ .|++|.|+++|++++..++..+
T Consensus       134 l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a  212 (450)
T 2jdq_A          134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADA  212 (450)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHH
T ss_pred             HccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHH
Confidence            999877889999999999999999996433999999999999999753  3333344 8999999999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCc-chhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCC
Q 041643          267 ANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPK-PESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHG  345 (576)
Q Consensus       267 a~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~-~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g  345 (576)
                      +|+|.+++.+.++.+..+...|++++|+.+|.++.    .. ......++.++..........          +. ..|+
T Consensus       213 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~----------~~-~~~~  277 (450)
T 2jdq_A          213 CWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND----YKVVSPALRAVGNIVTGDDIQTQV----------IL-NCSA  277 (450)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC----HHHHHHHHHHHHHHTTSCHHHHHH----------HH-TTTH
T ss_pred             HHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc----hhHHHHHHHHHHHHhhCChHHHHH----------HH-HCcc
Confidence            99999999887888888999999999999997532    11 000111222221110000000          00 0123


Q ss_pred             CCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHH
Q 041643          346 QHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQT  425 (576)
Q Consensus       346 ~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~  425 (576)
                      ++.+.......++.+    +..|+++|.+|+.++...          ++..+.      .++++.|+.++.+++ +.++.
T Consensus       278 l~~L~~ll~~~~~~v----r~~a~~~L~~l~~~~~~~----------~~~~~~------~~~l~~L~~~l~~~~-~~v~~  336 (450)
T 2jdq_A          278 LQSLLHLLSSPKESI----KKEACWTISNITAGNRAQ----------IQTVID------ANIFPALISILQTAE-FRTRK  336 (450)
T ss_dssp             HHHHHHHTTCSSHHH----HHHHHHHHHHHTTSCHHH----------HHHHHH------TTHHHHHHHHHHHSC-HHHHH
T ss_pred             HHHHHHHHcCCCHHH----HHHHHHHHHHHHcCCHHH----------HHHHHH------CCCHHHHHHHHhcCC-HHHHH
Confidence            443323333445554    578999999999875432          221111      257889999998765 89999


Q ss_pred             HHHHHHHHHhcCCc-h-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCC-------CCHHHHHHHHHCCCc
Q 041643          426 PAIRSIGCLAKTFP-A-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNF-------NRSEHSKAIIEFDGV  492 (576)
Q Consensus       426 ~a~~aLgnLa~~~~-~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~-------~~~~~~~~Iv~~ggi  492 (576)
                      .|+.+|+|++.... .     .+.+++|+|+++|++.+.++++.|+++|.+++..+..       .-......+.+.||+
T Consensus       337 ~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~  416 (450)
T 2jdq_A          337 EAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGL  416 (450)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcH
Confidence            99999999987532 1     1458999999999999999999999999999843210       001235688899999


Q ss_pred             HhHHHhhccChh-HHHHHHHHHHHHh
Q 041643          493 PPLMRLLKISDR-AQVHGLVFLCYLA  517 (576)
Q Consensus       493 ~~Lv~LL~~~d~-vq~~A~~~L~~la  517 (576)
                      +.|..|+++++. ++..|..+|.++-
T Consensus       417 ~~l~~l~~~~~~~v~~~a~~~l~~~~  442 (450)
T 2jdq_A          417 DKIEFLQSHENQEIYQKAFDLIEHYF  442 (450)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence            999999988776 8888999888773

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.90  E-value=2.8e-22  Score=196.08  Aligned_cols=216  Identities=28%  Similarity=0.325  Sum_probs=184.4

Q ss_pred             CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC-chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHH
Q 041643          204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQ-ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQE  282 (576)
Q Consensus       204 GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~-~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~  282 (576)
                      |+||.|+++|++++ ++.|..|+++|.+|+.+. +++..+++.|++|.|+++|++++.+++..++++|++++.++++.++
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            68999999999999 999999999999999865 5899999999999999999999999999999999999998899999


Q ss_pred             HHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHH
Q 041643          283 EFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKA  362 (576)
Q Consensus       283 ~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~  362 (576)
                      .+.+.|++++|+.+|+++                                                        |++   
T Consensus        81 ~~~~~~~i~~l~~ll~~~--------------------------------------------------------~~~---  101 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTST--------------------------------------------------------DSE---  101 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCS--------------------------------------------------------SHH---
T ss_pred             HHHHCCCHHHHHHHHcCC--------------------------------------------------------CHH---
Confidence            999999999999999532                                                        222   


Q ss_pred             HHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhh
Q 041643          363 KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE  442 (576)
Q Consensus       363 ~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~  442 (576)
                       ++..|+++|++|+.++.+          .++               .+                             .+
T Consensus       102 -v~~~a~~~L~~l~~~~~~----------~~~---------------~~-----------------------------~~  126 (252)
T 4hxt_A          102 -VQKEAARALANIASGPDE----------AIK---------------AI-----------------------------VD  126 (252)
T ss_dssp             -HHHHHHHHHHHHTTSCHH----------HHH---------------HH-----------------------------HH
T ss_pred             -HHHHHHHHHHHHHcCCHH----------HHH---------------HH-----------------------------HH
Confidence             457899999999865321          110               01                             12


Q ss_pred             hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhccc-
Q 041643          443 KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSA-  520 (576)
Q Consensus       443 ~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~-  520 (576)
                      .+++|.|+++|++.+++++..|+|+|++++...    ++.++.+++.|+++.|+++|.+++. ++..|+++|++++.+. 
T Consensus       127 ~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  202 (252)
T 4hxt_A          127 AGGVEVLVKLLTSTDSEVQKEAARALANIASGP----DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT  202 (252)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC----HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence            467999999999999999999999999998642    6778899999999999999998877 9999999999998633 


Q ss_pred             CchHHHHhccchhhHhhh
Q 041643          521 GNSKALEQARALNALEGA  538 (576)
Q Consensus       521 ~~~~~l~~~~~l~~Le~~  538 (576)
                      .....+.+.|+++.|..+
T Consensus       203 ~~~~~l~~~~~i~~L~~l  220 (252)
T 4hxt_A          203 SAIKAIVDAGGVEVLQKL  220 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHG
T ss_pred             HHHHHHHHCCCHHHHHHH
Confidence            345678899999998744

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=3.4e-22  Score=191.91  Aligned_cols=198  Identities=19%  Similarity=0.219  Sum_probs=169.3

Q ss_pred             hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHH
Q 041643          202 EEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIA  280 (576)
Q Consensus       202 ~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~  280 (576)
                      ..|+.|+|++||++++ +..|..|+++|.+|+. +++++..+++.|++|.|+++|++++++++..|+++|++|+.++++.
T Consensus        10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            3678999999999988 9999999999999995 5678889999999999999999999999999999999999888999


Q ss_pred             HHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHH
Q 041643          281 QEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEV  360 (576)
Q Consensus       281 r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~v  360 (576)
                      ++.+.+.|+||+|+.+|+++                                                        |+. 
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~--------------------------------------------------------~~~-  111 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSP--------------------------------------------------------NEQ-  111 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCS--------------------------------------------------------CHH-
T ss_pred             HHHHHHCCCHHHHHHHHcCC--------------------------------------------------------cHH-
Confidence            99999999999999999532                                                        222 


Q ss_pred             HHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch
Q 041643          361 KAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA  440 (576)
Q Consensus       361 k~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~  440 (576)
                         ++..|+++|++|+.++.++                         ...+                             
T Consensus       112 ---v~~~a~~~L~~l~~~~~~~-------------------------~~~~-----------------------------  134 (210)
T 4db6_A          112 ---ILQEALWALSNIASGGNEQ-------------------------IQAV-----------------------------  134 (210)
T ss_dssp             ---HHHHHHHHHHHHTTSCHHH-------------------------HHHH-----------------------------
T ss_pred             ---HHHHHHHHHHHHHcCCHHH-------------------------HHHH-----------------------------
Confidence               4578999999998754210                         0111                             


Q ss_pred             hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhc
Q 041643          441 KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLAL  518 (576)
Q Consensus       441 ~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal  518 (576)
                      .+.++||+|+++|++.+.++++.|+|+|+|++...    ++.++.+.+.|+++.|++++.+++. ++..|+++|.+++.
T Consensus       135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~----~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGG----NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC----HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC----cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            13468999999999999999999999999998643    6888999999999999999998877 99999999998863

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.89  E-value=3.6e-22  Score=198.77  Aligned_cols=211  Identities=18%  Similarity=0.168  Sum_probs=157.9

Q ss_pred             CHHHHHHHHccCCCh--HHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHH
Q 041643          205 GILPLLKLLKEAASP--DAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQ  281 (576)
Q Consensus       205 gIppLV~LL~~g~~~--~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r  281 (576)
                      .||+||++|++++ +  ..|..|+++|.+|+. +++++..|+++|+||+||++|+++++++|+.|+|+|.||+.+++++|
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            5999999999998 7  899999999999996 67899999999999999999999999999999999999998889999


Q ss_pred             HHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHH
Q 041643          282 EEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVK  361 (576)
Q Consensus       282 ~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk  361 (576)
                      ..|.+.|+||+||++|++..                                                       |+   
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~-------------------------------------------------------~~---  109 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTR-------------------------------------------------------DL---  109 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCC-------------------------------------------------------CH---
T ss_pred             HHHHHcCCHHHHHHHHccCC-------------------------------------------------------CH---
Confidence            99999999999999996310                                                       22   


Q ss_pred             HHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh
Q 041643          362 AKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK  441 (576)
Q Consensus       362 ~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~  441 (576)
                       ++++.|+.|||+||....           .|..       ..++.++.|+.++..        |-       ... ...
T Consensus       110 -~~~e~a~~aL~nLS~~~~-----------~k~~-------i~~~~i~~Lv~ll~~--------p~-------sG~-~~~  154 (233)
T 3tt9_A          110 -ETKKQITGLLWNLSSNDK-----------LKNL-------MITEALLTLTENIII--------PF-------SGW-PEG  154 (233)
T ss_dssp             -HHHHHHHHHHHHHHTSGG-----------GHHH-------HHHHHHHHHCCCCCH--------HH-------HCC-CGG
T ss_pred             -HHHHHHHHHHHHHHcChh-----------hHHH-------HHhccHHHHHHHHhc--------cc-------cCC-ccc
Confidence             246889999999985421           1211       011223344322210        00       000 000


Q ss_pred             hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCC-cHhHHHhhccC------hh-HHHHHHHHH
Q 041643          442 EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDG-VPPLMRLLKIS------DR-AQVHGLVFL  513 (576)
Q Consensus       442 ~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~gg-i~~Lv~LL~~~------d~-vq~~A~~~L  513 (576)
                      +.      -+.....+++++.+|+.+|.|+++.+    ++.|+.|.+.+| |+.|+.+|+.+      +. .+..++.+|
T Consensus       155 ~~------~~~~~~~~~~v~~na~~~L~nLss~~----~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L  224 (233)
T 3tt9_A          155 DY------PKANGLLDFDIFYNVTGCLRNMSSAG----ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCIL  224 (233)
T ss_dssp             GC------CCCCTTCCHHHHHHHHHHHHHHTTSC----HHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             cc------ccccccchHHHHHHHHHHHHHHhcCC----HHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHH
Confidence            00      00001247799999999999999753    688999998755 79999999863      22 678899999


Q ss_pred             HHHhcc
Q 041643          514 CYLALS  519 (576)
Q Consensus       514 ~~lal~  519 (576)
                      .+|+..
T Consensus       225 ~nLs~~  230 (233)
T 3tt9_A          225 HNLSYQ  230 (233)
T ss_dssp             HHHCCC
T ss_pred             HHHHhh
Confidence            998754

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.88  E-value=2.4e-21  Score=190.92  Aligned_cols=217  Identities=20%  Similarity=0.269  Sum_probs=183.3

Q ss_pred             cCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHH
Q 041643          203 EGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQ  281 (576)
Q Consensus       203 ~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r  281 (576)
                      ....++++++|++++ ++.|..|+++|.++.. +.++++.+++.|+||.|+++|++++.+++..|+++|++++.++++.+
T Consensus        11 ~~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           11 GSELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             TCSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             cchHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            346999999999999 9999999999977655 67788899999999999999999999999999999999998889999


Q ss_pred             HHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHH
Q 041643          282 EEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVK  361 (576)
Q Consensus       282 ~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk  361 (576)
                      +.+.+.|+|++|+.+|+++                                                        |++  
T Consensus        90 ~~i~~~g~i~~L~~lL~~~--------------------------------------------------------~~~--  111 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSP--------------------------------------------------------NEQ--  111 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCS--------------------------------------------------------CHH--
T ss_pred             HHHHHcCCHHHHHHHHcCC--------------------------------------------------------CHH--
Confidence            9999999999999999642                                                        222  


Q ss_pred             HHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh
Q 041643          362 AKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK  441 (576)
Q Consensus       362 ~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~  441 (576)
                        ++..|+++|++|+.++..           +              ...+                             .
T Consensus       112 --v~~~a~~~L~~l~~~~~~-----------~--------------~~~~-----------------------------~  135 (252)
T 4db8_A          112 --ILQEALWALSNIASGGNE-----------Q--------------IQAV-----------------------------I  135 (252)
T ss_dssp             --HHHHHHHHHHHHTTSCHH-----------H--------------HHHH-----------------------------H
T ss_pred             --HHHHHHHHHHHhhcCCch-----------H--------------HHHH-----------------------------H
Confidence              457899999999875311           1              0111                             1


Q ss_pred             hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhccc
Q 041643          442 EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSA  520 (576)
Q Consensus       442 ~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~  520 (576)
                      +.++||+|+++|++.+.+++.+|+|+|++++...    +++++.+++.|+++.|+++|.+++. ++..|+++|++++.+.
T Consensus       136 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  211 (252)
T 4db8_A          136 DAGALPALVQLLSSPNEQILQEALWALSNIASGG----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  211 (252)
T ss_dssp             HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC
T ss_pred             HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC----hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC
Confidence            3467999999999999999999999999998643    6888899999999999999998877 9999999999998543


Q ss_pred             -CchHHHHhccchhhHhhh
Q 041643          521 -GNSKALEQARALNALEGA  538 (576)
Q Consensus       521 -~~~~~l~~~~~l~~Le~~  538 (576)
                       .....+.+.|+++.|..+
T Consensus       212 ~~~~~~~~~~g~i~~L~~l  230 (252)
T 4db8_A          212 NEQKQAVKEAGALEKLEQL  230 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHTT
T ss_pred             HHHHHHHHHCCcHHHHHHH
Confidence             345678899999998743

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.88  E-value=4.4e-22  Score=205.00  Aligned_cols=187  Identities=16%  Similarity=0.186  Sum_probs=159.2

Q ss_pred             CCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHH-HHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHH
Q 041643          174 GQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLK-LLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPII  251 (576)
Q Consensus       174 G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~-LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~L  251 (576)
                      ++.+.|..|+..|.+|... .+|...+++.||+|+||. +|++++ +..|+.|+|+|+|++.+ ++.+..+++.|++|+|
T Consensus        52 ~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~-~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~L  129 (296)
T 1xqr_A           52 ADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGA-AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  129 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence            3568999999999999874 678999999999999999 999988 99999999999999985 5678899999999999


Q ss_pred             HHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccccccc
Q 041643          252 VSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKST  330 (576)
Q Consensus       252 V~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~  330 (576)
                      +.+|++ ++..+++.|+|+|++|+.+++..++.|.+.|+||+|+.+|+++                              
T Consensus       130 l~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~------------------------------  179 (296)
T 1xqr_A          130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ------------------------------  179 (296)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS------------------------------
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC------------------------------
Confidence            999986 4789999999999999988888888999999999999999643                              


Q ss_pred             ccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHH
Q 041643          331 NVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQ  410 (576)
Q Consensus       331 ~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~  410 (576)
                                                |+.    +|..|+|||++|+.++.+.+          +...      -.++++.
T Consensus       180 --------------------------d~~----v~~~A~~aLs~L~~~~~~~~----------~~vv------~~g~i~~  213 (296)
T 1xqr_A          180 --------------------------VQK----LKVKSAFLLQNLLVGHPEHK----------GTLC------SMGMVQQ  213 (296)
T ss_dssp             --------------------------CHH----HHHHHHHHHHHHHHHCGGGH----------HHHH------HTTHHHH
T ss_pred             --------------------------CHH----HHHHHHHHHHHHHhCChHHH----------HHHH------HcCCHHH
Confidence                                      222    46789999999998755432          2111      1257899


Q ss_pred             HHHHhhhcCChhhHHHHHHHHHHHhcCCc
Q 041643          411 LLRLIHEESDAMLQTPAIRSIGCLAKTFP  439 (576)
Q Consensus       411 Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~  439 (576)
                      |+.+|.+.+ +.++++|+++|+||++..+
T Consensus       214 Lv~LL~~~d-~~v~~~al~aL~~l~~~~~  241 (296)
T 1xqr_A          214 LVALVRTEH-SPFHEHVLGALCSLVTDFP  241 (296)
T ss_dssp             HHHHHTSCC-STHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCCC-hhHHHHHHHHHHHHHhCCh
Confidence            999998765 8999999999999998754

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.87  E-value=4.7e-21  Score=183.88  Aligned_cols=132  Identities=17%  Similarity=0.278  Sum_probs=124.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHc
Q 041643          167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDV  245 (576)
Q Consensus       167 li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~  245 (576)
                      ++.+|++++.+.+..|+.+|.+|+..+++++..+++.|+||+|+++|++++ +..|+.|+++|+||+. +++++..+++.
T Consensus        17 l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~   95 (210)
T 4db6_A           17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDA   95 (210)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence            478899999999999999999999877889999999999999999999998 9999999999999996 56788999999


Q ss_pred             CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhcc
Q 041643          246 LGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCM  299 (576)
Q Consensus       246 Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~  299 (576)
                      |++|.|+++|++++..++..|+|+|+||+.++++.++.+.+.|+|++|+.+|++
T Consensus        96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  149 (210)
T 4db6_A           96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS  149 (210)
T ss_dssp             TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred             CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC
Confidence            999999999999999999999999999998888888899999999999999953

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.7e-20  Score=212.79  Aligned_cols=291  Identities=15%  Similarity=0.136  Sum_probs=215.9

Q ss_pred             HHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcCcc--------------------------------------cHHHHHhc
Q 041643          163 WVWSFISTIQM-GQIKSRVDAANELASLARDNNR--------------------------------------NRKIIVEE  203 (576)
Q Consensus       163 ~v~~li~~L~~-G~~e~k~~AA~~L~~La~~~~~--------------------------------------~~~~I~~~  203 (576)
                      ++..++.++++ ++......++..|.||+...+.                                      +++.|.+.
T Consensus       377 ~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea  456 (778)
T 3opb_A          377 FTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT  456 (778)
T ss_dssp             HHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC
Confidence            34555788884 5556677778888888763221                                      57788999


Q ss_pred             CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChh---HHHHHHHHHHHHhc-CChH
Q 041643          204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVK---VQVAVANLVARMAE-LDSI  279 (576)
Q Consensus       204 GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~---vq~~Aa~aL~~LA~-~~~~  279 (576)
                      |+||+|+.++++++ +..|+.|+|+|.||+.++++|..++++||+++|+++|.+++..   .+..|+.+|++|+- .+|.
T Consensus       457 GvIp~Lv~Ll~S~s-~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~  535 (778)
T 3opb_A          457 ELISFLKREMHNLS-PNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG  535 (778)
T ss_dssp             THHHHHHHHGGGSC-HHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred             cCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence            99999999999998 9999999999999999999999999999999999999988644   89999999999984 3343


Q ss_pred             HHHHHHh---cCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccC
Q 041643          280 AQEEFVR---ENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELE  356 (576)
Q Consensus       280 ~r~~i~~---~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~  356 (576)
                      .  .|..   .|+||||+.||..++..+                                        + .+  .  ..+
T Consensus       536 ~--~f~~~~~~~aI~pLv~LL~~~~~~~----------------------------------------~-~~--l--~~~  568 (778)
T 3opb_A          536 L--IFKKYSALNAIPFLFELLPRSTPVD----------------------------------------D-NP--L--HND  568 (778)
T ss_dssp             H--HSSSSCSTTHHHHHHHTSCCSSSCS----------------------------------------S-CC-------C
T ss_pred             H--HcCCCccccchHHHHHHcCCCCCcc----------------------------------------c-cc--c--ccc
Confidence            2  3421   389999999997321000                                        0 00  0  001


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhc
Q 041643          357 TPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAK  436 (576)
Q Consensus       357 d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~  436 (576)
                      |+-. ...+-.|+.||.|||..+...      +.++|+..++.     .++++.|..++.++ ++.++..|+.+|+||+.
T Consensus       569 ~~~~-~l~~feAL~ALTNLAs~~~n~------~E~~r~~Ii~~-----~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~  635 (778)
T 3opb_A          569 EQIK-LTDNYEALLALTNLASSETSD------GEEVCKHIVST-----KVYWSTIENLMLDE-NVPLQRSTLELISNMMS  635 (778)
T ss_dssp             CCCC-HHHHHHHHHHHHHHHHCCSHH------HHHHHHHHHHS-----HHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHT
T ss_pred             cccc-HHHHHHHHHHHHHHhcCCccc------chHHHHHHHHh-----cCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhC
Confidence            1100 012457999999999764210      12455543321     26788899988765 48899999999999986


Q ss_pred             CCchh-------h----hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHC-CCcHhHHHhhcc--C
Q 041643          437 TFPAK-------E----KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEF-DGVPPLMRLLKI--S  502 (576)
Q Consensus       437 ~~~~~-------~----~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~-ggi~~Lv~LL~~--~  502 (576)
                      .....       +    .+.+++||.++++.+.++++.|+|||+++++..    +...+.|++. +|++.|+.+|+.  +
T Consensus       636 ~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~----~~ia~~ll~~~~gi~~Ll~lL~~~~~  711 (778)
T 3opb_A          636 HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI----PLIAKELLTKKELIENAIQVFADQID  711 (778)
T ss_dssp             SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC----HHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC----hHHHHHHHHccccHHHHHHHHhccCC
Confidence            44321       0    123889999999999999999999999997532    4667889988 899999999998  5


Q ss_pred             hh-HHHHHHHHHHHHhc
Q 041643          503 DR-AQVHGLVFLCYLAL  518 (576)
Q Consensus       503 d~-vq~~A~~~L~~lal  518 (576)
                      +. +|..++.++++|+.
T Consensus       712 ~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          712 DIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             CHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            55 89999999999985

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.84  E-value=8.9e-20  Score=206.89  Aligned_cols=327  Identities=14%  Similarity=0.116  Sum_probs=242.2

Q ss_pred             chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCC-HHHHHHHHcc-CCChHHHHHHHHHHHHhhcC
Q 041643          158 DPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGG-ILPLLKLLKE-AASPDAQTAAANALFNIATD  235 (576)
Q Consensus       158 ~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~Gg-IppLV~LL~~-g~~~~~q~~AA~AL~nLa~~  235 (576)
                      ..+..++..++..|..++.+.+..|...|.+|+.+ ++-|+.+++..+ ++.|+++|++ ++ ......++..|.||+.+
T Consensus       330 ~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~  407 (778)
T 3opb_A          330 INLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTL  407 (778)
T ss_dssp             CCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCC
T ss_pred             CcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCC
Confidence            34555777778888888877799999999999886 667787775544 9999999996 56 78999999999999974


Q ss_pred             Cc---------------------------------------hHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcC
Q 041643          236 QE---------------------------------------TVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAEL  276 (576)
Q Consensus       236 ~~---------------------------------------~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~  276 (576)
                      .+                                       ++..++++|+||+|+.+++++++.+|++++|+|.+|+.+
T Consensus       408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d  487 (778)
T 3opb_A          408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS  487 (778)
T ss_dssp             CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred             CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence            32                                       356788999999999999999999999999999999965


Q ss_pred             ChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccC
Q 041643          277 DSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELE  356 (576)
Q Consensus       277 ~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~  356 (576)
                       +++|..+++.|++++|+.+|.+++.                                             .       +
T Consensus       488 -~~~R~~lvqqGal~~LL~lL~s~~~---------------------------------------------~-------~  514 (778)
T 3opb_A          488 -KNFIPQLAQQGAVKIILEYLANKQD---------------------------------------------I-------G  514 (778)
T ss_dssp             -GGGHHHHHHTTHHHHHHHHTTCC-------------------------------------------------------C
T ss_pred             -HHHHHHHHHCCCHHHHHHHHhcCCC---------------------------------------------c-------c
Confidence             8999999999999999999976420                                             0       0


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCC-h------------hh
Q 041643          357 TPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESD-A------------ML  423 (576)
Q Consensus       357 d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~-~------------~l  423 (576)
                      +     ..|..|+.||.+|+.....         .+   +|....+  .++|+.|+.+|..++. +            ..
T Consensus       515 ~-----~~k~~AA~ALArLlis~np---------~~---~f~~~~~--~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~  575 (778)
T 3opb_A          515 E-----PIRILGCRALTRMLIFTNP---------GL---IFKKYSA--LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTD  575 (778)
T ss_dssp             C-----HHHHHHHHHHHHHHHTSCH---------HH---HSSSSCS--TTHHHHHHHTSCCSSSCSSCC---CCCCCHHH
T ss_pred             h-----HHHHHHHHHHHHHHhcCCH---------HH---HcCCCcc--ccchHHHHHHcCCCCCcccccccccccccHHH
Confidence            1     1467899999999854321         11   2311111  2689999999973211 1            12


Q ss_pred             HHHHHHHHHHHhcCCch-----h----h-hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHH-HHHHHC---
Q 041643          424 QTPAIRSIGCLAKTFPA-----K----E-KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHS-KAIIEF---  489 (576)
Q Consensus       424 q~~a~~aLgnLa~~~~~-----~----~-~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~-~~Iv~~---  489 (576)
                      +.+|++||.|||....+     +    . .|++|.|+++|.+.+..|++.|+|+|+|+++.     ++.+ +.+.+.   
T Consensus       576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~-----~e~i~~k~~~~~~~  650 (778)
T 3opb_A          576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH-----PLTIAAKFFNLENP  650 (778)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS-----GGGTGGGTSCCSSH
T ss_pred             HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC-----cHHHHHHHHhhcCc
Confidence            67999999999986521     1    2 36899999999999999999999999999964     3433 233322   


Q ss_pred             ---CCcHhHHHhhccChh-HHHHHHHHHHHHh-cccCchHHHHhc-cchhhHhhhhcccCCCCCcHHHHHH---HHHHHH
Q 041643          490 ---DGVPPLMRLLKISDR-AQVHGLVFLCYLA-LSAGNSKALEQA-RALNALEGAARTVLPQHPELRDLFA---QAIYHL  560 (576)
Q Consensus       490 ---ggi~~Lv~LL~~~d~-vq~~A~~~L~~la-l~~~~~~~l~~~-~~l~~Le~~~~~~~~q~~~~~~l~~---~a~~~l  560 (576)
                         +++++||.|++.+|. +|..|.++|++++ .+......+.+. ++++.|.++-+.   | ++.+++-.   ..+..|
T Consensus       651 ~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~---~-~~~~~l~~R~~~~l~NL  726 (778)
T 3opb_A          651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFAD---Q-IDDIELRQRLLMLFFGL  726 (778)
T ss_dssp             HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHH---T-TTCHHHHHHHHHHHHHH
T ss_pred             hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhc---c-CCCHHHHHHHHHHHHHH
Confidence               248899999998887 9999999999995 455666777776 677776533211   1 23445533   345555


Q ss_pred             HhhcCCC
Q 041643          561 TLYQAGS  567 (576)
Q Consensus       561 ~~y~~~~  567 (576)
                      ..|.++.
T Consensus       727 ~~~~~~~  733 (778)
T 3opb_A          727 FEVIPDN  733 (778)
T ss_dssp             HTTCCST
T ss_pred             HHhhccC
Confidence            5555533

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.44  E-value=9.9e-12  Score=124.49  Aligned_cols=250  Identities=16%  Similarity=0.105  Sum_probs=176.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHc
Q 041643          166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDV  245 (576)
Q Consensus       166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~  245 (576)
                      .++..|..++...|..|+..|..+..           .+.+++|+++|++.+ +..+..|+++|.++...++....    
T Consensus        27 ~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~~~~~----   90 (280)
T 1oyz_A           27 ELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKCEDN----   90 (280)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTTHHH----
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccccchH----
Confidence            34788999999999999999998751           246899999999888 99999999999999764433221    


Q ss_pred             CCHHHHHH-hhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643          246 LGVPIIVS-VLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE  324 (576)
Q Consensus       246 Gavp~LV~-lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~  324 (576)
                       .++.|.+ ++++++..++..++++|+++...++....     .+++.|+.+|.+                         
T Consensus        91 -l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d-------------------------  139 (280)
T 1oyz_A           91 -VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFD-------------------------  139 (280)
T ss_dssp             -HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTC-------------------------
T ss_pred             -HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhC-------------------------
Confidence             3344543 45778899999999999999854432221     245667666632                         


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhH
Q 041643          325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAA  404 (576)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~  404 (576)
                                                     +|+.|    +..|+++|.++...                          
T Consensus       140 -------------------------------~~~~v----R~~a~~aL~~~~~~--------------------------  158 (280)
T 1oyz_A          140 -------------------------------KSTNV----RRATAFAISVINDK--------------------------  158 (280)
T ss_dssp             -------------------------------SCHHH----HHHHHHHHHTC-----------------------------
T ss_pred             -------------------------------CCHHH----HHHHHHHHHhcCCH--------------------------
Confidence                                           24444    46788888766321                          


Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 041643          405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSK  484 (576)
Q Consensus       405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~  484 (576)
                       ..++.|+.++.+.+ +.++..|+.+||++...    ...++++|+.+|++.++.|+.+|+++|+++..           
T Consensus       159 -~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~~----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-----------  221 (280)
T 1oyz_A          159 -ATIPLLINLLKDPN-GDVRNWAAFAININKYD----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-----------  221 (280)
T ss_dssp             -CCHHHHHHHHTCSS-HHHHHHHHHHHHHHTCC----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----------
T ss_pred             -HHHHHHHHHHcCCC-HHHHHHHHHHHHhhccC----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----------
Confidence             13677788887654 78999999999998522    23578999999999999999999999998852           


Q ss_pred             HHHHCCCcHhHHHhhccChhHHHHHHHHHHHHhcccCchHHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHHH
Q 041643          485 AIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHL  560 (576)
Q Consensus       485 ~Iv~~ggi~~Lv~LL~~~d~vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l  560 (576)
                          ...++.|+.+|...+ ++..|+.+|..+.    +      ...++.|....     +++...++..+++..|
T Consensus       222 ----~~~~~~L~~~l~d~~-vr~~a~~aL~~i~----~------~~~~~~L~~~l-----~~~~~~~~~~~~~~~l  277 (280)
T 1oyz_A          222 ----KRVLSVLCDELKKNT-VYDDIIEAAGELG----D------KTLLPVLDTML-----YKFDDNEIITSAIDKL  277 (280)
T ss_dssp             ----GGGHHHHHHHHTSSS-CCHHHHHHHHHHC----C------GGGHHHHHHHH-----TTSSCCHHHHHHHHHH
T ss_pred             ----HhhHHHHHHHhcCcc-HHHHHHHHHHhcC----c------hhhhHHHHHHH-----hcCCCcHHHHHHHHHh
Confidence                247888899997654 7777888887773    2      25667776322     2233345555555544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.36  E-value=2.2e-11  Score=121.93  Aligned_cols=201  Identities=15%  Similarity=0.117  Sum_probs=152.0

Q ss_pred             HHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChH
Q 041643          200 IVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSI  279 (576)
Q Consensus       200 I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~  279 (576)
                      +.+.+.++.|+++|++++ +..+..|+++|+++..          .++++.|+++|.+++..++..|+++|+.+....  
T Consensus        19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--   85 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--   85 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--
T ss_pred             HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--
Confidence            445678999999999888 9999999999999872          247899999999999999999999999887432  


Q ss_pred             HHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHH
Q 041643          280 AQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPE  359 (576)
Q Consensus       280 ~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~  359 (576)
                              ..++.++.+|...                                                   ....+|+.
T Consensus        86 --------~~~~~l~~~L~~~---------------------------------------------------~~~d~~~~  106 (280)
T 1oyz_A           86 --------KCEDNVFNILNNM---------------------------------------------------ALNDKSAC  106 (280)
T ss_dssp             --------TTHHHHHHHHHHH---------------------------------------------------HHHCSCHH
T ss_pred             --------ccchHHHHHHHHH---------------------------------------------------HhcCCCHH
Confidence                    1244555555210                                                   00012444


Q ss_pred             HHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc
Q 041643          360 VKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP  439 (576)
Q Consensus       360 vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~  439 (576)
                      |    +..|+++|.++..++..                     ....+++.|+..+.+.+ +.++..|+.+||++..   
T Consensus       107 v----r~~a~~aL~~l~~~~~~---------------------~~~~~~~~L~~~l~d~~-~~vR~~a~~aL~~~~~---  157 (280)
T 1oyz_A          107 V----RATAIESTAQRCKKNPI---------------------YSPKIVEQSQITAFDKS-TNVRRATAFAISVIND---  157 (280)
T ss_dssp             H----HHHHHHHHHHHHHHCGG---------------------GHHHHHHHHHHHTTCSC-HHHHHHHHHHHHTC-----
T ss_pred             H----HHHHHHHHHHHhccCCc---------------------ccHHHHHHHHHHhhCCC-HHHHHHHHHHHHhcCC---
Confidence            4    57899999988643211                     11256888999898755 8999999999998852   


Q ss_pred             hhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHh
Q 041643          440 AKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLA  517 (576)
Q Consensus       440 ~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~la  517 (576)
                         ...+|+|+.+|++.+..|+..|+|+|+++....    +         ..++.|+.+|..++. ++..|+.+|..+.
T Consensus       158 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~----~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          158 ---KATIPLLINLLKDPNGDVRNWAAFAININKYDN----S---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             ----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC----H---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc----H---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence               358999999999999999999999999985321    1         245789999988777 8999999998773

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.35  E-value=1.6e-11  Score=117.77  Aligned_cols=187  Identities=20%  Similarity=0.214  Sum_probs=147.8

Q ss_pred             cCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHH
Q 041643          203 EGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQE  282 (576)
Q Consensus       203 ~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~  282 (576)
                      .+.++.|+++|++++ +..+..|+++|..+..          .++++.|+++|.+++..++..++++|+.+..       
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            457999999999888 9999999999998754          3689999999999999999999999998863       


Q ss_pred             HHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHH
Q 041643          283 EFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKA  362 (576)
Q Consensus       283 ~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~  362 (576)
                          .++++.|+.+|.+                                                        +|+.+  
T Consensus        80 ----~~~~~~L~~~l~~--------------------------------------------------------~~~~v--   97 (211)
T 3ltm_A           80 ----ERAVEPLIKALKD--------------------------------------------------------EDGWV--   97 (211)
T ss_dssp             ----GGGHHHHHHHTTC--------------------------------------------------------SSHHH--
T ss_pred             ----HHHHHHHHHHHcC--------------------------------------------------------CCHHH--
Confidence                2467888888742                                                        13443  


Q ss_pred             HHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhh
Q 041643          363 KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE  442 (576)
Q Consensus       363 ~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~  442 (576)
                        +..|+++|..+...                           ..++.|+.++.+.+ +.++..|+.+||++.      +
T Consensus        98 --r~~a~~aL~~~~~~---------------------------~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~------~  141 (211)
T 3ltm_A           98 --RQSAAVALGQIGDE---------------------------RAVEPLIKALKDED-WFVRIAAAFALGEIG------D  141 (211)
T ss_dssp             --HHHHHHHHHHHCCG---------------------------GGHHHHHHHTTCSS-HHHHHHHHHHHHHHC------C
T ss_pred             --HHHHHHHHHHhCcH---------------------------HHHHHHHHHHhCCC-HHHHHHHHHHHHHcC------C
Confidence              46788888877421                           13677888887654 889999999999994      2


Q ss_pred             hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhccc
Q 041643          443 KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSA  520 (576)
Q Consensus       443 ~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~  520 (576)
                      ...++.|+.+|++.++.|+..|+++|+++..               ...++.|.++++.++. ++..|..+|+.+..+.
T Consensus       142 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          142 ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            4579999999999999999999999999952               1256778899988777 8999999998885443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.35  E-value=6.3e-11  Score=131.80  Aligned_cols=288  Identities=17%  Similarity=0.199  Sum_probs=213.4

Q ss_pred             HHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccC-CChHHHHHHHHHHHHhhcCCc---
Q 041643          163 WVWSFISTIQMGQ-IKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEA-ASPDAQTAAANALFNIATDQE---  237 (576)
Q Consensus       163 ~v~~li~~L~~G~-~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g-~~~~~q~~AA~AL~nLa~~~~---  237 (576)
                      .|..+..+|++++ .+.|..|...|.++++   +|+..++ ++|+|+|+..|+.+ .+.+.-+.+..+|.++-...+   
T Consensus        22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk---~y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~   97 (651)
T 3grl_A           22 TIQKLCDRVASSTLLDDRRNAVRALKSLSK---KYRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE   97 (651)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHHTTT---TTTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHHH---HhHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence            4556689999985 7999999999999975   4777776 67999999999876 336677778889988776321   


Q ss_pred             ---------------hHHH-HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChH-HHHHHHhc-CCchhHHHhhcc
Q 041643          238 ---------------TVRF-IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSI-AQEEFVRE-NVTRSLISLLCM  299 (576)
Q Consensus       238 ---------------~~~~-iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~-~r~~i~~~-g~I~~LV~LL~~  299 (576)
                                     +.+. +-+.+.|+.|+++|++.+..++..+...|..|+.+.++ .|+.|... ++|+.||.+|..
T Consensus        98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d  177 (651)
T 3grl_A           98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD  177 (651)
T ss_dssp             ----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC
T ss_pred             ccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC
Confidence                           1222 34678899999999999999999999999999988777 89888855 999999999953


Q ss_pred             ccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCC
Q 041643          300 DIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGC  379 (576)
Q Consensus       300 ~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~  379 (576)
                      ..                                                         +   .++-.+...|.+|+.+|
T Consensus       178 ~r---------------------------------------------------------E---~iRneallLL~~Lt~~n  197 (651)
T 3grl_A          178 SR---------------------------------------------------------E---VIRNDGVLLLQALTRSN  197 (651)
T ss_dssp             SS---------------------------------------------------------H---HHHHHHHHHHHHHHTTC
T ss_pred             ch---------------------------------------------------------H---HHHHHHHHHHHHHhcCC
Confidence            20                                                         0   14567889999999886


Q ss_pred             cccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcC---ChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHH
Q 041643          380 LLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEES---DAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVA  451 (576)
Q Consensus       380 ~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~---~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~  451 (576)
                      .          ++++-.      +-.+..+.|+.+++.+.   ...+..-|+..|.||.+..+.     ++++.||.|..
T Consensus       198 ~----------~iQklV------AFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~  261 (651)
T 3grl_A          198 G----------AIQKIV------AFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKP  261 (651)
T ss_dssp             H----------HHHHHH------HHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGG
T ss_pred             H----------HHHHHH------HHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHH
Confidence            4          444411      22367899999998654   125677899999999987643     46789999999


Q ss_pred             hhcCCCHH------HHHH---HHHHHHhhcCCCCCC--CHHHHHHHHHCCCcHhHHHhhccCh--h-HHHHHHHHHHHHh
Q 041643          452 LLSNRNVD------VATE---AVIALSKFVSPDNFN--RSEHSKAIIEFDGVPPLMRLLKISD--R-AQVHGLVFLCYLA  517 (576)
Q Consensus       452 LL~~~~~~------V~~e---Aa~AL~nla~~~n~~--~~~~~~~Iv~~ggi~~Lv~LL~~~d--~-vq~~A~~~L~~la  517 (576)
                      +|..+++.      ...+   +-..+.-+.++++..  +..+++++.+.|++++|++++.+..  . ++..|+.+++.+.
T Consensus       262 LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~i  341 (651)
T 3grl_A          262 WFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVI  341 (651)
T ss_dssp             GGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred             HhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence            99754321      2333   333444455655431  3578999999999999999997652  2 7778888888776


Q ss_pred             c-ccCchHHHHhcc
Q 041643          518 L-SAGNSKALEQAR  530 (576)
Q Consensus       518 l-~~~~~~~l~~~~  530 (576)
                      . |..+++.+++..
T Consensus       342 rgN~~~Q~~fa~~~  355 (651)
T 3grl_A          342 RGCQVNQDYFASVN  355 (651)
T ss_dssp             TTCHHHHHHHHHCE
T ss_pred             hCCHHHHHHHhhcc
Confidence            4 555577777643

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.29  E-value=5.5e-11  Score=113.15  Aligned_cols=184  Identities=21%  Similarity=0.240  Sum_probs=147.8

Q ss_pred             hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHH
Q 041643          202 EEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQ  281 (576)
Q Consensus       202 ~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r  281 (576)
                      ..+..+.++++|++++ +..+..|+++|..+..          .++++.|+++|.+++..++..|+++|+.+..      
T Consensus        12 ~~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------   74 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   74 (201)
T ss_dssp             CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred             CCcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            3567899999999999 9999999999998764          3579999999999999999999999998863      


Q ss_pred             HHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHH
Q 041643          282 EEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVK  361 (576)
Q Consensus       282 ~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk  361 (576)
                           ..+++.|+.+|..                                                        +|+.+ 
T Consensus        75 -----~~~~~~L~~~l~d--------------------------------------------------------~~~~v-   92 (201)
T 3ltj_A           75 -----ERAVEPLIKALKD--------------------------------------------------------EDGWV-   92 (201)
T ss_dssp             -----GGGHHHHHHHTTC--------------------------------------------------------SSHHH-
T ss_pred             -----HHHHHHHHHHHcC--------------------------------------------------------CCHHH-
Confidence                 1467888888742                                                        13443 


Q ss_pred             HHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh
Q 041643          362 AKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK  441 (576)
Q Consensus       362 ~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~  441 (576)
                         +..|+++|..+...                           ..++.|+.++.+.+ +.++..|+.+||++.      
T Consensus        93 ---r~~a~~aL~~~~~~---------------------------~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~------  135 (201)
T 3ltj_A           93 ---RQSAAVALGQIGDE---------------------------RAVEPLIKALKDED-WFVRIAAAFALGEIG------  135 (201)
T ss_dssp             ---HHHHHHHHHHHCCG---------------------------GGHHHHHHHTTCSS-HHHHHHHHHHHHHHT------
T ss_pred             ---HHHHHHHHHHhCcH---------------------------HHHHHHHHHHcCCC-HHHHHHHHHHHHHhC------
Confidence               46788888877321                           13677788887654 889999999999995      


Q ss_pred             hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHH
Q 041643          442 EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYL  516 (576)
Q Consensus       442 ~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~l  516 (576)
                      +...++.|+.+|++.++.|+..|+++|+++..      +         ..++.|.+++..++. ++..|..+|..+
T Consensus       136 ~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          136 DERAVEPLIKALKDEDGWVRQSAADALGEIGG------E---------RVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            24689999999999999999999999999942      1         256788899987777 888899988766

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.27  E-value=4.4e-09  Score=117.09  Aligned_cols=297  Identities=14%  Similarity=0.107  Sum_probs=200.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcc-cHHHHHhc-CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHH
Q 041643          164 VWSFISTIQMGQIKSRVDAANELASLARDNNR-NRKIIVEE-GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRF  241 (576)
Q Consensus       164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~-~~~~I~~~-GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~  241 (576)
                      |--++.+|++.+...|..+...|..|+..++. ++++|... ||||.||.+|++.. +..|.+|...|.+|+.+..+.+.
T Consensus       124 i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~Lt~~n~~iQk  202 (651)
T 3grl_A          124 VTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQALTRSNGAIQK  202 (651)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            33458899999999999999999999987766 89999966 89999999999888 99999999999999997666555


Q ss_pred             HH-HcCCHHHHHHhhcCCC----hhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHH
Q 041643          242 IV-DVLGVPIIVSVLGEAP----VKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIH  316 (576)
Q Consensus       242 iv-~~Gavp~LV~lL~s~~----~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~  316 (576)
                      +| -+||++.|++++.+..    ..+.+.+...|.||...++.+|..|.+.|.|+.|..+|..+.. ...++ ..  .+.
T Consensus       203 lVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~-~~~W~-~Q--k~~  278 (651)
T 3grl_A          203 IVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE-NSGWS-AQ--KVT  278 (651)
T ss_dssp             HHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC-SSCCC-HH--HHH
T ss_pred             HHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc-ccccH-HH--HHH
Confidence            55 5799999999996532    3678889999999999999999999999999999999975421 10110 00  000


Q ss_pred             HHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhh
Q 041643          317 SLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSA  396 (576)
Q Consensus       317 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a  396 (576)
                      +                                               ...+...+.-|..++...    ......++ +
T Consensus       279 N-----------------------------------------------~~~~L~iIrlLv~~~~~~----~~t~~nQ~-~  306 (651)
T 3grl_A          279 N-----------------------------------------------LHLMLQLVRVLVSPNNPP----GATSSCQK-A  306 (651)
T ss_dssp             H-----------------------------------------------HHHHHHHHHHHTCTTSCH----HHHHHHHH-H
T ss_pred             H-----------------------------------------------HHHHHHHHHHHhCCCCCC----CCCHHHHH-H
Confidence            0                                               001222333333221110    00001111 1


Q ss_pred             hccCchhHHHHHHHHHHHhhhcC-ChhhHHHHHHHHHHHhcCCchhhhC----------cHHHHHHh----hcC-CCHHH
Q 041643          397 FKTNSPAAKAVLDQLLRLIHEES-DAMLQTPAIRSIGCLAKTFPAKEKR----------MIGPLVAL----LSN-RNVDV  460 (576)
Q Consensus       397 ~k~~s~a~~~vV~~Ll~lL~~~~-~~~lq~~a~~aLgnLa~~~~~~~~~----------~I~~LV~L----L~~-~~~~V  460 (576)
                      |.     -.++++.|++++.... ...++..|+.++|.+.+..+..+..          ..|.++.+    +.+ ..+++
T Consensus       307 ~~-----~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~l  381 (651)
T 3grl_A          307 MF-----QCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVL  381 (651)
T ss_dssp             HH-----HTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHH
T ss_pred             HH-----HCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHH
Confidence            11     1257788899887542 3578899999999999876543221          12445554    433 46888


Q ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHHC------C----CcH---hHHHhhccChhHHH-HHHHHHHHHhcccCchHHH
Q 041643          461 ATEAVIALSKFVSPDNFNRSEHSKAIIEF------D----GVP---PLMRLLKISDRAQV-HGLVFLCYLALSAGNSKAL  526 (576)
Q Consensus       461 ~~eAa~AL~nla~~~n~~~~~~~~~Iv~~------g----gi~---~Lv~LL~~~d~vq~-~A~~~L~~lal~~~~~~~l  526 (576)
                      +..|+.++..+..+ |   .+-+..|+..      +    .+.   .|+.-|-+.|+.+. -|+.++.++..+.+..++.
T Consensus       382 R~Aa~~cl~ay~~~-N---~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~  457 (651)
T 3grl_A          382 RCAVLYCFQCFLYK-N---QKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQ  457 (651)
T ss_dssp             HHHHHHHHHHHHTT-C---HHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhC-C---HHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence            98899999888753 2   5666677753      1    122   24444445566443 3777788887666555543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.26  E-value=1.9e-10  Score=110.24  Aligned_cols=184  Identities=24%  Similarity=0.252  Sum_probs=146.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643          164 VWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIV  243 (576)
Q Consensus       164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv  243 (576)
                      +..++..|+.++...|..|+..|..+..           .+++|.|+++|++++ +..+..|+++|+++..         
T Consensus        21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~---------   79 (211)
T 3ltm_A           21 VEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED-AWVRRAAADALGQIGD---------   79 (211)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC---------
Confidence            3445788999999999999999987632           357999999999888 9999999999999863         


Q ss_pred             HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhc
Q 041643          244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK  323 (576)
Q Consensus       244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~  323 (576)
                       .++++.|+++|.+++..++..|+++|+.+..           .++++.|+.+|..                        
T Consensus        80 -~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d------------------------  123 (211)
T 3ltm_A           80 -ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKD------------------------  123 (211)
T ss_dssp             -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC------------------------
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhC------------------------
Confidence             3578999999999999999999999999863           2467888888742                        


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchh
Q 041643          324 EMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPA  403 (576)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a  403 (576)
                                                      +|+.    ++..|+++|..+...                         
T Consensus       124 --------------------------------~~~~----vr~~a~~aL~~~~~~-------------------------  142 (211)
T 3ltm_A          124 --------------------------------EDWF----VRIAAAFALGEIGDE-------------------------  142 (211)
T ss_dssp             --------------------------------SSHH----HHHHHHHHHHHHCCG-------------------------
T ss_pred             --------------------------------CCHH----HHHHHHHHHHHcCCH-------------------------
Confidence                                            1343    356789999887321                         


Q ss_pred             HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCC
Q 041643          404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSP  474 (576)
Q Consensus       404 ~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~  474 (576)
                        ..++.|++++.+.+ +.++..|+.+|+.+.      ...+++.|..+|++.++.|+..|.++|.++...
T Consensus       143 --~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          143 --RAVEPLIKALKDED-GWVRQSAADALGEIG------GERVRAAMEKLAETGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             --GGHHHHHHHTTCSS-HHHHHHHHHHHHHHC------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred             --HHHHHHHHHHcCCC-HHHHHHHHHHHHHhC------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence              13677888887654 889999999999994      246799999999999999999999999999743

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.26  E-value=1.9e-10  Score=109.36  Aligned_cols=181  Identities=24%  Similarity=0.252  Sum_probs=147.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHH
Q 041643          165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVD  244 (576)
Q Consensus       165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~  244 (576)
                      -.+++.|++++...|..|+..|..+..           .+.++.|+++|++++ +..+..|+++|+.+..          
T Consensus        17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~----------   74 (201)
T 3ltj_A           17 EMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED-AWVRRAAADALGQIGD----------   74 (201)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC----------
Confidence            345899999999999999999987642           257899999999888 9999999999998853          


Q ss_pred             cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643          245 VLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE  324 (576)
Q Consensus       245 ~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~  324 (576)
                      ..+++.|+++|.++++.++..|+++|+++..           ..+++.|+.+|..                         
T Consensus        75 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d-------------------------  118 (201)
T 3ltj_A           75 ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKD-------------------------  118 (201)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC-------------------------
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcC-------------------------
Confidence            2578999999999999999999999999863           1357778887732                         


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhH
Q 041643          325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAA  404 (576)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~  404 (576)
                                                     +|+.    ++..|+++|..+...                          
T Consensus       119 -------------------------------~~~~----vr~~a~~aL~~~~~~--------------------------  137 (201)
T 3ltj_A          119 -------------------------------EDWF----VRIAAAFALGEIGDE--------------------------  137 (201)
T ss_dssp             -------------------------------SSHH----HHHHHHHHHHHHTCG--------------------------
T ss_pred             -------------------------------CCHH----HHHHHHHHHHHhCCH--------------------------
Confidence                                           1343    356788998877421                          


Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                       ..++.|+.++.+.+ +.++..|+.+|+++.      ...+++.|..+|++.++.|+..|.++|.++.
T Consensus       138 -~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          138 -RAVEPLIKALKDED-GWVRQSAADALGEIG------GERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -GGHHHHHHHTTCSS-HHHHHHHHHHHHHHC------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -HHHHHHHHHHcCCC-HHHHHHHHHHHHHhC------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence             23677888887654 889999999999994      3457999999999999999999999999884

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.07  E-value=6.2e-09  Score=116.17  Aligned_cols=280  Identities=17%  Similarity=0.197  Sum_probs=162.2

Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCc-h
Q 041643          160 ILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE-T  238 (576)
Q Consensus       160 i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~-~  238 (576)
                      ...++-.+...|...++..|..|+.+|..+...+++   .+.+.|.+|.|.++|.+.+ +.++.+|+++|..++.+.. .
T Consensus       119 ~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~  194 (591)
T 2vgl_B          119 TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNS  194 (591)
T ss_dssp             HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSC
T ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCc
Confidence            344555567888888999999999999999886543   3444577999999998877 9999999999999998532 1


Q ss_pred             ---------HHHHHH----------------------------cCCHHHHHHhhcCCChhHHHHHHHHHHHHhc---CCh
Q 041643          239 ---------VRFIVD----------------------------VLGVPIIVSVLGEAPVKVQVAVANLVARMAE---LDS  278 (576)
Q Consensus       239 ---------~~~iv~----------------------------~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~---~~~  278 (576)
                               -..++.                            ...++.+..+|++.+..++..|++++.++..   .++
T Consensus       195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~  274 (591)
T 2vgl_B          195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDS  274 (591)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTT
T ss_pred             cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCH
Confidence                     112221                            2356667777888888999999999999874   233


Q ss_pred             HHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCH
Q 041643          279 IAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETP  358 (576)
Q Consensus       279 ~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~  358 (576)
                      +.-..+. ..++++|+.+++++.   .-+ ...-.++..++......             +...   +..+ -....+|.
T Consensus       275 ~~~~~~~-~~~~~~L~~L~~~d~---~vr-~~aL~~l~~i~~~~p~~-------------~~~~---~~~~-~~~~~d~~  332 (591)
T 2vgl_B          275 DYYNMLL-KKLAPPLVTLLSGEP---EVQ-YVALRNINLIVQKRPEI-------------LKQE---IKVF-FVKYNDPI  332 (591)
T ss_dssp             BSHHHHH-HHTHHHHHHHTTSCH---HHH-HHHHHHHHHHHHHCCST-------------TTTC---TTTT-SCCTTSCH
T ss_pred             HHHHHHH-HHHHHHHHHHhcCCc---cHH-HHHHHHHHHHHHhChHH-------------HHHH---HHhh-eeccCChH
Confidence            3322222 345688998875321   000 11111222222211000             0000   0000 11122334


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCcccc---------hhcccchHHHHhhhc-------cCchhHHHHHHHHHHHhhhcCChh
Q 041643          359 EVKAKVRIACAEALWKLSKGCLLSL---------WSAESNAELRRSAFK-------TNSPAAKAVLDQLLRLIHEESDAM  422 (576)
Q Consensus       359 ~vk~~~k~~Aa~ALw~La~g~~~~I---------avae~~~~lrr~a~k-------~~s~a~~~vV~~Ll~lL~~~~~~~  422 (576)
                      .    +|..|.+.|.+++..  .|+         .+-+.+.++|+.+..       ...+.....++.|+.+++... +.
T Consensus       333 ~----Ir~~al~~L~~l~~~--~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~-~~  405 (591)
T 2vgl_B          333 Y----VKLEKLDIMIRLASQ--ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV-NY  405 (591)
T ss_dssp             H----HHHHHHHHHHHTCCS--STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCC-HH
T ss_pred             H----HHHHHHHHHHHHCCh--hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccc-hH
Confidence            3    457788888888643  332         112234445554321       112233555566666665543 44


Q ss_pred             hHHHHHHHHHHHhcCCchhhhCcHHHHHHhhc-CCCHHHHHHHHHHHHhhc
Q 041643          423 LQTPAIRSIGCLAKTFPAKEKRMIGPLVALLS-NRNVDVATEAVIALSKFV  472 (576)
Q Consensus       423 lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~-~~~~~V~~eAa~AL~nla  472 (576)
                      +...++.+++++.+..++....+++.|.+.|. ..+++++..++|.|+.++
T Consensus       406 v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~  456 (591)
T 2vgl_B          406 VVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYA  456 (591)
T ss_dssp             HHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHccc
Confidence            55555666666665555444456666666664 345566666666666664

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.04  E-value=4.5e-09  Score=121.57  Aligned_cols=319  Identities=12%  Similarity=0.061  Sum_probs=189.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHH-H---HhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCch
Q 041643          163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKI-I---VEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET  238 (576)
Q Consensus       163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~-I---~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~  238 (576)
                      ++-.++..+++++...|..|..+|..++...++.... .   .-.+.+|+|+++|++.+ +.++..|+++|.++......
T Consensus       129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~~  207 (852)
T 4fdd_A          129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRTQ  207 (852)
T ss_dssp             HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcccH
Confidence            4556688899999999999999999988653321110 0   01235889999998877 99999999999988764332


Q ss_pred             HHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHH
Q 041643          239 VRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSL  318 (576)
Q Consensus       239 ~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~  318 (576)
                      ...-.-.+.++.+.+++.+++.+++..++++|..++...++.-.... .+.++.++.++....    .  .+...++...
T Consensus       208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~----~--~vr~~a~e~l  280 (852)
T 4fdd_A          208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQD----E--NVALEACEFW  280 (852)
T ss_dssp             HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSS----H--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCc----H--HHHHHHHHHH
Confidence            11111124678899999999999999999999999986654311111 135666666665321    1  1111111111


Q ss_pred             HhhhccccccccccCCCCCCCCCCCCCCCCcc-cc-----------ccc-CCHH-----HHHHHHHHHHHHHHHhhcCCc
Q 041643          319 VQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNK-KD-----------REL-ETPE-----VKAKVRIACAEALWKLSKGCL  380 (576)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~-----------~e~-~d~~-----vk~~~k~~Aa~ALw~La~g~~  380 (576)
                      ........ ..+..   .+.+..   -++.+. ..           .+. +|++     ....++..|+.+|..|+....
T Consensus       281 ~~l~~~~~-~~~~~---~~~~~~---l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~  353 (852)
T 4fdd_A          281 LTLAEQPI-CKDVL---VRHLPK---LIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR  353 (852)
T ss_dssp             HHHTTSTT-HHHHH---TTTHHH---HHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG
T ss_pred             HHHhcchh-HHHHH---HHHHHH---HHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc
Confidence            11100000 00000   000000   000000 00           010 1110     001235677888887764311


Q ss_pred             ccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhcCC
Q 041643          381 LSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSNR  456 (576)
Q Consensus       381 ~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~~~  456 (576)
                      +         +           ....+++.|..++.+.+ ..++..|+.++|+++......    -..++|.|+.+|++.
T Consensus       354 ~---------~-----------~~~~l~~~l~~~l~~~~-~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~  412 (852)
T 4fdd_A          354 D---------E-----------LLPHILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK  412 (852)
T ss_dssp             G---------G-----------GHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS
T ss_pred             H---------H-----------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC
Confidence            1         0           12346777777777654 889999999999999755421    135789999999999


Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccC
Q 041643          457 NVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAG  521 (576)
Q Consensus       457 ~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~  521 (576)
                      ++.|+..|+|+|++++..-..  ..+..++  .+.++.|++.|..++. +|..|+++|.+++.+.+
T Consensus       413 ~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~  474 (852)
T 4fdd_A          413 KALVRSITCWTLSRYAHWVVS--QPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEAC  474 (852)
T ss_dssp             SHHHHHHHHHHHHHTHHHHHH--SCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHHHHhcc--chHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999741000  0000111  2456778888876666 99999999999875544

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.01  E-value=5e-09  Score=119.21  Aligned_cols=97  Identities=23%  Similarity=0.262  Sum_probs=86.6

Q ss_pred             hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHH-HHhhcCCChhHHHHHHHHHHHHhcC-ChH
Q 041643          202 EEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPII-VSVLGEAPVKVQVAVANLVARMAEL-DSI  279 (576)
Q Consensus       202 ~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~L-V~lL~s~~~~vq~~Aa~aL~~LA~~-~~~  279 (576)
                      ....|.|+++.|++++ +..|..|++||.||+.++..++.+...|+|+++ ..+|.+.+.++++.|+++|.||+.+ +++
T Consensus        32 ~~~~i~Pll~~L~S~~-~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           32 REDKILPVLKDLKSPD-AKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HHHTTHHHHHHHSSSC-CSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             chhhHHHHHHHcCCCC-HHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence            3457889999999998 999999999999999999999999999998875 5578888999999999999999965 467


Q ss_pred             HHHHHHhcCCchhHHHhhcc
Q 041643          280 AQEEFVRENVTRSLISLLCM  299 (576)
Q Consensus       280 ~r~~i~~~g~I~~LV~LL~~  299 (576)
                      ..+.+.+.|++++|..+|+.
T Consensus       111 ~~~~l~~~~il~~L~~~l~~  130 (684)
T 4gmo_A          111 FCVHLYRLDVLTAIEHAAKA  130 (684)
T ss_dssp             HHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHh
Confidence            88899999999999999964

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.93  E-value=6.8e-08  Score=105.28  Aligned_cols=299  Identities=13%  Similarity=0.147  Sum_probs=199.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCccc-HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHH
Q 041643          164 VWSFISTIQMGQIKSRVDAANELASLARDNNRN-RKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFI  242 (576)
Q Consensus       164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~-~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~i  242 (576)
                      +..++..++..+.+.|..|+.+|..++..-... +....-...+|.+.+++++.+ +..+..++++|..++..-...  .
T Consensus       283 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~~--~  359 (588)
T 1b3u_A          283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGKD--N  359 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCHH--H
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhHh--H
Confidence            444567788888899999999999888642211 111222346788999998888 999999999999998632111  1


Q ss_pred             HHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhh
Q 041643          243 VDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK  322 (576)
Q Consensus       243 v~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~  322 (576)
                      .....+|.|..+|++.+.+++..++.+++.+.......  . .....+|.|+.++..                       
T Consensus       360 ~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~-~~~~~lp~l~~~~~d-----------------------  413 (588)
T 1b3u_A          360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--Q-LSQSLLPAIVELAED-----------------------  413 (588)
T ss_dssp             HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--H-HHHHHHHHHHHHHTC-----------------------
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHHhcC-----------------------
Confidence            22347899999999998999999999998887532111  1 112344555544421                       


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCch
Q 041643          323 KEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP  402 (576)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~  402 (576)
                                                       .+..    ++..++.+|..++..-         +.+    .|     
T Consensus       414 ---------------------------------~~~~----vr~~~~~~l~~l~~~~---------~~~----~~-----  438 (588)
T 1b3u_A          414 ---------------------------------AKWR----VRLAIIEYMPLLAGQL---------GVE----FF-----  438 (588)
T ss_dssp             ---------------------------------SSHH----HHHHHHHHHHHHHHHH---------CGG----GC-----
T ss_pred             ---------------------------------CCch----HHHHHHHHHHHHHHHc---------CHH----HH-----
Confidence                                             1122    3467888888876420         000    11     


Q ss_pred             hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCH
Q 041643          403 AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK--EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRS  480 (576)
Q Consensus       403 a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~--~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~  480 (576)
                       ...+++.+++++.+.+ ..++..|+.+++.++..+...  ...++|.|+.++++.+..++..++++++.++..      
T Consensus       439 -~~~l~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~------  510 (588)
T 1b3u_A          439 -DEKLNSLCMAWLVDHV-YAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV------  510 (588)
T ss_dssp             -CHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH------
T ss_pred             -HHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh------
Confidence             1246788888887654 789999999999998765432  236789999999999999999999999999731      


Q ss_pred             HHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHH
Q 041643          481 EHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYH  559 (576)
Q Consensus       481 ~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~  559 (576)
                       ......-...++.|+++++..+. ++..++.+++.+....+..  .....+++.|+.+..   =.+++.+....+|+..
T Consensus       511 -~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~~p~l~~l~~---d~d~~vr~~a~~al~~  584 (588)
T 1b3u_A          511 -CGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQ---DQDVDVKYFAQEALTV  584 (588)
T ss_dssp             -HHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh--hhHHHHHHHHHHHcC---CCchhHHHHHHHHHHH
Confidence             11112233578899999987766 8999999999997655432  233455666654311   1234555666666655


Q ss_pred             H
Q 041643          560 L  560 (576)
Q Consensus       560 l  560 (576)
                      +
T Consensus       585 l  585 (588)
T 1b3u_A          585 L  585 (588)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.87  E-value=1.2e-07  Score=103.23  Aligned_cols=125  Identities=17%  Similarity=0.131  Sum_probs=90.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHc
Q 041643          166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDV  245 (576)
Q Consensus       166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~  245 (576)
                      .+...++..+.+.|..|+..|..++..-..  . ......+|.|..++.+++ +..+..|+.+|..++..-...  ....
T Consensus       168 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--~~~~  241 (588)
T 1b3u_A          168 YFRNLCSDDTPMVRRAAASKLGEFAKVLEL--D-NVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--DLEA  241 (588)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--H-HHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--HHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHhcH--H-hHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--HHHH
Confidence            334567778899999999999999865321  1 223456889999998887 899999999999998742211  1234


Q ss_pred             CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhcc
Q 041643          246 LGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCM  299 (576)
Q Consensus       246 Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~  299 (576)
                      ..+|.+..++++.+..++..++.+|+.++...+.   .......++.++.++..
T Consensus       242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d  292 (588)
T 1b3u_A          242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKD  292 (588)
T ss_dssp             HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTC
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCC
Confidence            4788899999888889999999999999853111   11234567888888864

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.85  E-value=3e-08  Score=114.70  Aligned_cols=355  Identities=12%  Similarity=0.012  Sum_probs=198.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCc-hHHH
Q 041643          163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE-TVRF  241 (576)
Q Consensus       163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~-~~~~  241 (576)
                      ++-.+...+++.+...|..|+.+|++++....+.... .-.+.+|.|+++|++.+ +.++..|+|+|++++..-. ....
T Consensus       360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~  437 (852)
T 4fdd_A          360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPD  437 (852)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhccchHH
Confidence            4444566788889999999999999998754322111 22457899999998888 9999999999999997321 1111


Q ss_pred             HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcch-hhhhHHHHHHh
Q 041643          242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPE-SAKTTIHSLVQ  320 (576)
Q Consensus       242 iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i-~~~~si~~~v~  320 (576)
                      ..-.+.++.|++.|.+.+..++..|+++|.+++......-... -.+.++.|+.+++...    .+.. ..-.++..+..
T Consensus       438 ~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~-l~~ll~~L~~~l~~~~----~~~~~~~~~ai~~l~~  512 (852)
T 4fdd_A          438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY-LAYILDTLVFAFSKYQ----HKNLLILYDAIGTLAD  512 (852)
T ss_dssp             TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH-HHHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHH
Confidence            1123578899999988889999999999999985422110001 1245566666664321    0100 00112222221


Q ss_pred             hhccccccccccCCCCCCCCCCCCCCCCcc---cccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhh
Q 041643          321 MKKEMTEKSTNVTNNSDGSSRGGHGQHYNK---KDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAF  397 (576)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~  397 (576)
                      ......   .     .+.+...  -++.+.   ......|++++     .+..++..++..             +.. .|
T Consensus       513 ~~~~~~---~-----~~~~~~~--l~p~l~~~~~~l~d~~~~~~-----~~~~~l~~i~~~-------------~g~-~~  563 (852)
T 4fdd_A          513 SVGHHL---N-----KPEYIQM--LMPPLIQKWNMLKDEDKDLF-----PLLECLSSVATA-------------LQS-GF  563 (852)
T ss_dssp             HHGGGG---C-----CHHHHHH--HHHHHHHHHHHSCTTCTTHH-----HHHHHHHHHHHH-------------HGG-GG
T ss_pred             Hhhhhh---c-----cHHHHHH--HHHHHHHHHHhcccccHHHH-----HHHHHHHHHHHH-------------HhH-hH
Confidence            111000   0     0000000  000000   00001223221     345555554431             000 12


Q ss_pred             ccCchhHHHHHHHHHHHhhh----------------cCChhhHHHHHHHHHHHhcCCchh------hhCcHHHHHHhhcC
Q 041643          398 KTNSPAAKAVLDQLLRLIHE----------------ESDAMLQTPAIRSIGCLAKTFPAK------EKRMIGPLVALLSN  455 (576)
Q Consensus       398 k~~s~a~~~vV~~Ll~lL~~----------------~~~~~lq~~a~~aLgnLa~~~~~~------~~~~I~~LV~LL~~  455 (576)
                      .   |....+++.++.+++.                .++.+++..++.+||.+++.....      +.++++.++..|.+
T Consensus       564 ~---~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~  640 (852)
T 4fdd_A          564 L---PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD  640 (852)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTC
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCC
Confidence            1   1222344444444432                113567889999999999755321      24678999999999


Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch-HHHHhccchh
Q 041643          456 RNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS-KALEQARALN  533 (576)
Q Consensus       456 ~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~-~~l~~~~~l~  533 (576)
                      .+.+|++.|.++++.++..-   ..+-..++-+  .+|.|++.|..++. ++..|+++++.++.+.+.. .... ..+++
T Consensus       641 ~~~~vr~~a~~~l~~l~~~~---~~~~~~~l~~--~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~-~~il~  714 (852)
T 4fdd_A          641 KMPEVRQSSFALLGDLTKAC---FQHVKPCIAD--FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLH  714 (852)
T ss_dssp             SSHHHHHHHHHHHHHHHHHC---GGGTGGGHHH--HHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGT-HHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHh---hHHHHHHHHH--HHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHH-HHHHH
Confidence            99999999999999987311   1122233332  56788888866555 7788999999998766542 1111 23344


Q ss_pred             hHh-hhhcccCCCCCcHHHHHHHHHHHHHhhc
Q 041643          534 ALE-GAARTVLPQHPELRDLFAQAIYHLTLYQ  564 (576)
Q Consensus       534 ~Le-~~~~~~~~q~~~~~~l~~~a~~~l~~y~  564 (576)
                      .|. -++.+. . +....+-...++++|-.+.
T Consensus       715 ~L~~~l~~~~-~-~~~~~~~a~~~igrl~~~~  744 (852)
T 4fdd_A          715 QLVEIINRPN-T-PKTLLENTAITIGRLGYVC  744 (852)
T ss_dssp             HHHHHHTCSS-C-CHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCC-C-CchHHHHHHHHHHHHHHhC
Confidence            443 222111 1 1244555556777776653

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.80  E-value=9.5e-08  Score=106.56  Aligned_cols=258  Identities=16%  Similarity=0.148  Sum_probs=181.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcC
Q 041643          167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVL  246 (576)
Q Consensus       167 li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G  246 (576)
                      .+..+++.+.+.|.-+.-.+..++..+++.   +  .-.+..|.+-|.+.+ +..+..|..+|+++. .++..+.     
T Consensus        54 vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~---~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~-~~~~~~~-----  121 (591)
T 2vgl_B           54 VVNCMQTDNLELKKLVYLYLMNYAKSQPDM---A--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIR-VDKITEY-----  121 (591)
T ss_dssp             HHHTTSSSCHHHHHHHHHHHHHHHHHSHHH---H--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCC-SGGGHHH-----
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcccCchH---H--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCC-hHHHHHH-----
Confidence            367788889999988888888777643322   2  235788888898888 999999999998886 3444443     


Q ss_pred             CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccc
Q 041643          247 GVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMT  326 (576)
Q Consensus       247 avp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~  326 (576)
                      .+|.+.++|.+.++.++..|++++.++...+|+.   +...+.++.|..+|..                           
T Consensus       122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d---------------------------  171 (591)
T 2vgl_B          122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIAD---------------------------  171 (591)
T ss_dssp             HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSC---------------------------
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCC---------------------------
Confidence            3578999999999999999999999999766542   2234566777777732                           


Q ss_pred             ccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHH
Q 041643          327 EKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKA  406 (576)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~  406 (576)
                                                   .|+.    ++..|+.+|..++..+.+.          +   +.   +....
T Consensus       172 -----------------------------~d~~----V~~~A~~aL~~i~~~~~~~----------~---~~---~l~~~  202 (591)
T 2vgl_B          172 -----------------------------SNPM----VVANAVAALSEISESHPNS----------N---LL---DLNPQ  202 (591)
T ss_dssp             -----------------------------SCHH----HHHHHHHHHHHHTTSCCSC----------C---SC---CCHHH
T ss_pred             -----------------------------CChh----HHHHHHHHHHHHHhhCCCc----------c---ch---hccHH
Confidence                                         1444    3578999999998654321          0   00   01224


Q ss_pred             HHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 041643          407 VLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAI  486 (576)
Q Consensus       407 vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~I  486 (576)
                      .+..|++.+.+.+ +-.|...++.++.++...+.....+++.+..+|++.+..|..+|+++|.++...-. .+++..+.+
T Consensus       203 ~~~~Ll~~l~~~~-~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~-~~~~~~~~~  280 (591)
T 2vgl_B          203 NINKLLTALNECT-EWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP-KDSDYYNML  280 (591)
T ss_dssp             HHHHHHHHHHHCC-HHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC-BTTBSHHHH
T ss_pred             HHHHHHHcCCCCC-chHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC-CCHHHHHHH
Confidence            5677777776654 77888888999888754333334689999999999999999999999999863100 012333333


Q ss_pred             HHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcc
Q 041643          487 IEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALS  519 (576)
Q Consensus       487 v~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~  519 (576)
                      . ....++|+.|+. ++. +|..|+.++..+...
T Consensus       281 ~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~  312 (591)
T 2vgl_B          281 L-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQK  312 (591)
T ss_dssp             H-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence            2 345688888876 555 888899999888653

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.77  E-value=1.9e-08  Score=114.40  Aligned_cols=130  Identities=16%  Similarity=0.180  Sum_probs=110.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHH-HHccCCChHHHHHHHHHHHHhhcC--CchHHHHHH
Q 041643          168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLK-LLKEAASPDAQTAAANALFNIATD--QETVRFIVD  244 (576)
Q Consensus       168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~-LL~~g~~~~~q~~AA~AL~nLa~~--~~~~~~iv~  244 (576)
                      +..|++++.+.|..|+.+|.+|+. ++.+++.+..+|+|++++. +|.+.+ .+++++|++||.||+.+  .+.+..+++
T Consensus        40 l~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~-~~Vr~~A~gaLrnL~~~~g~d~~~~l~~  117 (684)
T 4gmo_A           40 LKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNN-IDSRAAGWEILKVLAQEEEADFCVHLYR  117 (684)
T ss_dssp             HHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhhcCchHHHHHHH
Confidence            678999999999999999999997 5889999999999999876 566556 99999999999999974  577889999


Q ss_pred             cCCHHHHHHhhcCCCh---------------------hHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhcc
Q 041643          245 VLGVPIIVSVLGEAPV---------------------KVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCM  299 (576)
Q Consensus       245 ~Gavp~LV~lL~s~~~---------------------~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~  299 (576)
                      .|++++|..+|++...                     ++..++..+|.+|+..+.+..+.+...++|+.|+.+|..
T Consensus       118 ~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          118 LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence            9999999999853211                     233457788899998888888899999999999999853

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.67  E-value=6.3e-07  Score=94.53  Aligned_cols=293  Identities=12%  Similarity=0.072  Sum_probs=175.1

Q ss_pred             HHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcC-cccHHHHHhcCCHHHHHHHHccCC-ChHHHHHHHHHHHHhhcCCc-
Q 041643          163 WVWSFISTIQMG--QIKSRVDAANELASLARDN-NRNRKIIVEEGGILPLLKLLKEAA-SPDAQTAAANALFNIATDQE-  237 (576)
Q Consensus       163 ~v~~li~~L~~G--~~e~k~~AA~~L~~La~~~-~~~~~~I~~~GgIppLV~LL~~g~-~~~~q~~AA~AL~nLa~~~~-  237 (576)
                      ++-.++..++++  +...|..|..+|..++... +..-.... ...++.|+++|++.. ++.++..|+++|.++...-+ 
T Consensus       129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (462)
T 1ibr_B          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (462)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            455668888998  8999999999999998642 11111111 236788999998872 38999999999999765321 


Q ss_pred             hHH-HHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCch-hHHHhhccccccCCCcchhhhhHH
Q 041643          238 TVR-FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTR-SLISLLCMDIALDLPKPESAKTTI  315 (576)
Q Consensus       238 ~~~-~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~-~LV~LL~~~t~~~~~~~i~~~~si  315 (576)
                      +.. .....-.++.+.+++.+++.+++..++++|..++...+..   +.  ..++ .++.++-..               
T Consensus       208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~--~~~~~~l~~~~~~~---------------  267 (462)
T 1ibr_B          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY---ME--TYMGPALFAITIEA---------------  267 (462)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG---CT--TTTTTTHHHHHHHH---------------
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHH---------------
Confidence            110 1111114667777788888999999999999999754321   11  1122 333332100               


Q ss_pred             HHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHH--
Q 041643          316 HSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELR--  393 (576)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lr--  393 (576)
                                                           ....++++    +..|.+.+..++..........+...+-+  
T Consensus       268 -------------------------------------~~~~~~~v----~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  306 (462)
T 1ibr_B          268 -------------------------------------MKSDIDEV----ALQGIEFWSNVCDEEMDLAIEASEAAEQGRP  306 (462)
T ss_dssp             -------------------------------------HHCSSHHH----HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred             -------------------------------------HcCCchHH----HHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence                                                 00123333    34556655555432100000000000000  


Q ss_pred             --HhhhccCchhHHHHHHHHHHHhhhc------CChhhHHHHHHHHHHHhcCCchh-hhCcHHHHHHhhcCCCHHHHHHH
Q 041643          394 --RSAFKTNSPAAKAVLDQLLRLIHEE------SDAMLQTPAIRSIGCLAKTFPAK-EKRMIGPLVALLSNRNVDVATEA  464 (576)
Q Consensus       394 --r~a~k~~s~a~~~vV~~Ll~lL~~~------~~~~lq~~a~~aLgnLa~~~~~~-~~~~I~~LV~LL~~~~~~V~~eA  464 (576)
                        +..+....+..+.+++.|++.+.+.      ++..+...|..+|+.|+..++.. -..++|.+...|++.+..++..|
T Consensus       307 ~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aa  386 (462)
T 1ibr_B          307 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAA  386 (462)
T ss_dssp             SSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             ccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence              0000000012345677787777543      12357888999999999866531 12356677778889999999999


Q ss_pred             HHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccC
Q 041643          465 VIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAG  521 (576)
Q Consensus       465 a~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~  521 (576)
                      .++|+.++.+..   ++..+... ...+|.|+.+|...+. ++..|+++|+.++...+
T Consensus       387 l~~l~~l~~~~~---~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          387 VMAFGCILEGPE---PSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (462)
T ss_dssp             HHHHHHTSSSSC---TTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHhcCCc---HHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence            999999985321   11111111 4578899999987777 89999999999975443

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.63  E-value=3.4e-06  Score=94.60  Aligned_cols=126  Identities=15%  Similarity=0.070  Sum_probs=93.6

Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCch-
Q 041643          160 ILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET-  238 (576)
Q Consensus       160 i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~-  238 (576)
                      +..++..+...|...++..|..|+.++..+...+++..     .+.++.|.++|.+.+ +.++..|+++|..++.+... 
T Consensus       140 ~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~  213 (618)
T 1w63_A          140 CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDM  213 (618)
T ss_dssp             HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHH
Confidence            34456666788899999999999999999988655322     257888999998878 99999999999999875322 


Q ss_pred             HHHHHHcCCHHHHHHhhcC---------------CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhc
Q 041643          239 VRFIVDVLGVPIIVSVLGE---------------APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC  298 (576)
Q Consensus       239 ~~~iv~~Gavp~LV~lL~s---------------~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~  298 (576)
                      ...+  ...+|.|+++|++               .++-.|.....+|+.++..++...+     ..++.|-.++.
T Consensus       214 ~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~  281 (618)
T 1w63_A          214 LAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVAT  281 (618)
T ss_dssp             HHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHh
Confidence            2222  3678999988863               4688899999999999987765432     34455555553

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.47  E-value=1.5e-05  Score=89.37  Aligned_cols=247  Identities=15%  Similarity=0.069  Sum_probs=170.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 041643          168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG  247 (576)
Q Consensus       168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga  247 (576)
                      +..+++.+.+.|.-.--.+..++..++   +...  -.+..|.+-|.+.+ +..+..|.++|+++.. +    .++ ...
T Consensus        76 ik~~~s~~~~~Krl~Yl~~~~~~~~~~---e~~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~-~----~~~-~~l  143 (618)
T 1w63_A           76 LKLIASQKFTDKRIGYLGAMLLLDERQ---DVHL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS-S----EMC-RDL  143 (618)
T ss_dssp             HHHHHSSSHHHHHHHHHHHHHHCCCCH---HHHH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC-H----HHH-HHH
T ss_pred             HHHHcCCchHHHHHHHHHHHHHhCCCc---HHHH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC-H----HHH-HHH
Confidence            677888899999888777887776533   2211  25788999999888 9999999999999984 2    233 246


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccc
Q 041643          248 VPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTE  327 (576)
Q Consensus       248 vp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~  327 (576)
                      ++.+.++|++.++.++..|+.++.++...+|+.-     .+.++.|..+|.                             
T Consensus       144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~-----------------------------  189 (618)
T 1w63_A          144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLN-----------------------------  189 (618)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTT-----------------------------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhC-----------------------------
Confidence            8899999999999999999999999997655321     122222222221                             


Q ss_pred             cccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHH
Q 041643          328 KSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAV  407 (576)
Q Consensus       328 ~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~v  407 (576)
                                                 ..|+.|    +..|..+|..++..+.          +... .|.       .+
T Consensus       190 ---------------------------D~d~~V----~~~Al~~L~~i~~~~~----------~~~~-~~~-------~~  220 (618)
T 1w63_A          190 ---------------------------EKNHGV----LHTSVVLLTEMCERSP----------DMLA-HFR-------KL  220 (618)
T ss_dssp             ---------------------------CCCHHH----HHHHHHHHHHHCCSHH----------HHHH-HHH-------TT
T ss_pred             ---------------------------CCCHhH----HHHHHHHHHHHHHhCh----------HHHH-HHH-------HH
Confidence                                       235554    4678889988875422          2211 122       24


Q ss_pred             HHHHHHHhhh--------------cCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhc------CCCHHHHHHHHHH
Q 041643          408 LDQLLRLIHE--------------ESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLS------NRNVDVATEAVIA  467 (576)
Q Consensus       408 V~~Ll~lL~~--------------~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~------~~~~~V~~eAa~A  467 (576)
                      ++.|+++|.+              ..++-.|...++.++.+++..+.....+++.|..+++      +.+..|..+|+++
T Consensus       221 v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~  300 (618)
T 1w63_A          221 VPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLT  300 (618)
T ss_dssp             HHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence            5666665543              1347889999999999997655444466677766653      3456799999999


Q ss_pred             HHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcc
Q 041643          468 LSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALS  519 (576)
Q Consensus       468 L~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~  519 (576)
                      +.++...     ++.+.     .++..|..+|.+++. ++..|+.+|+.++.+
T Consensus       301 i~~l~~~-----~~l~~-----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~  343 (618)
T 1w63_A          301 IMDIKSE-----SGLRV-----LAINILGRFLLNNDKNIRYVALTSLLKTVQT  343 (618)
T ss_dssp             HHHSCCC-----HHHHH-----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH
T ss_pred             HHhcCCC-----HHHHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh
Confidence            9988531     22221     367889999987776 888899988888754

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.39  E-value=6.1e-06  Score=86.90  Aligned_cols=235  Identities=12%  Similarity=0.076  Sum_probs=147.1

Q ss_pred             HHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCcccHH-HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchH
Q 041643          163 WVWSFISTIQMG--QIKSRVDAANELASLARDNNRNRK-IIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETV  239 (576)
Q Consensus       163 ~v~~li~~L~~G--~~e~k~~AA~~L~~La~~~~~~~~-~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~  239 (576)
                      ++..++..|+..  +.+.|..|+.++.++...-..+.. .....-.++.|.+++.+++ +..+..++++|..++......
T Consensus       173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~vr~~~~~~l~~l~~~~~~~  251 (462)
T 1ibr_B          173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY  251 (462)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence            445557788877  689999999999886532111100 0011113566667777767 899999999999998743211


Q ss_pred             -HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc---------------------CCchhHHHhh
Q 041643          240 -RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRE---------------------NVTRSLISLL  297 (576)
Q Consensus       240 -~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~---------------------g~I~~LV~LL  297 (576)
                       ...+..+.++.++..+++.+++++..+.+.+..++.... ....+...                     ..+|.|+..|
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l  330 (462)
T 1ibr_B          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM-DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  330 (462)
T ss_dssp             CTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH-HHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH-HHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH
Confidence             111212667888888888889999999999998885321 11111110                     0111111111


Q ss_pred             ccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhc
Q 041643          298 CMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSK  377 (576)
Q Consensus       298 ~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~  377 (576)
                      ...                                              .   ...+.++..    ++..|+.+|..|+.
T Consensus       331 ~~~----------------------------------------------d---~d~~~~~~~----~r~~a~~~L~~l~~  357 (462)
T 1ibr_B          331 TKQ----------------------------------------------D---ENDDDDDWN----PCKAAGVCLMLLAT  357 (462)
T ss_dssp             TCC----------------------------------------------C---SSCCTTCCS----HHHHHHHHHHHHHH
T ss_pred             Hhc----------------------------------------------c---cccccccch----HHHHHHHHHHHHHH
Confidence            100                                              0   000011222    35688899988875


Q ss_pred             CCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHh
Q 041643          378 GCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVAL  452 (576)
Q Consensus       378 g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~L  452 (576)
                      .-.+.                    ....+++.+...+.+.+ ..++..|+.++|+++......     -..++|.|+.+
T Consensus       358 ~~~~~--------------------~~~~~~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~  416 (462)
T 1ibr_B          358 CCEDD--------------------IVPHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL  416 (462)
T ss_dssp             HTTTT--------------------HHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHG
T ss_pred             hccHH--------------------HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            32110                    12246677777777654 789999999999999754311     13578999999


Q ss_pred             hcCCCHHHHHHHHHHHHhhcC
Q 041643          453 LSNRNVDVATEAVIALSKFVS  473 (576)
Q Consensus       453 L~~~~~~V~~eAa~AL~nla~  473 (576)
                      |++.++.|+..|+|+|++++.
T Consensus       417 l~d~~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          417 MKDPSVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999973

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.32  E-value=2.7e-05  Score=88.86  Aligned_cols=313  Identities=13%  Similarity=0.107  Sum_probs=186.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCc-ccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchH--
Q 041643          163 WVWSFISTIQMGQIKSRVDAANELASLARDNN-RNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETV--  239 (576)
Q Consensus       163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~-~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~--  239 (576)
                      ++..+...+++.+...|..|+..|+.++.... +...... ...+|.|++.|++.+ +.++..++|+|++++..-...  
T Consensus       370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~  447 (861)
T 2bpt_A          370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESID  447 (861)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcC
Confidence            34444567778888999999999999986432 1111122 236889999998887 999999999999998631110  


Q ss_pred             -HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCCh-----HHHHHHHhcCCchhHHHhhccccccCCCcchhhhh
Q 041643          240 -RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDS-----IAQEEFVRENVTRSLISLLCMDIALDLPKPESAKT  313 (576)
Q Consensus       240 -~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~-----~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~  313 (576)
                       .. .-...+|.|++.|++. ..++..++++|.+++....     .....+  ...++.|+.++...             
T Consensus       448 ~~~-~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~-------------  510 (861)
T 2bpt_A          448 PQQ-HLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRI-------------  510 (861)
T ss_dssp             TTT-THHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCS-------------
T ss_pred             CHH-HHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCc-------------
Confidence             00 1123578899989776 8899999999999885311     000000  01122222332110             


Q ss_pred             HHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHH
Q 041643          314 TIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELR  393 (576)
Q Consensus       314 si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lr  393 (576)
                                                               ..++.    ++..+..+|..++......         ..
T Consensus       511 -----------------------------------------d~~~~----vr~~a~~al~~l~~~~~~~---------~~  536 (861)
T 2bpt_A          511 -----------------------------------------DNEFN----ARASAFSALTTMVEYATDT---------VA  536 (861)
T ss_dssp             -----------------------------------------CCGGG----HHHHHHHHHHHHHHHCCGG---------GH
T ss_pred             -----------------------------------------CcchH----HHHHHHHHHHHHHHHcchh---------hH
Confidence                                                     00122    4577889998887543211         11


Q ss_pred             HhhhccCchhHHHHHHHHHHHhhhc--------------CChhhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhcC
Q 041643          394 RSAFKTNSPAAKAVLDQLLRLIHEE--------------SDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSN  455 (576)
Q Consensus       394 r~a~k~~s~a~~~vV~~Ll~lL~~~--------------~~~~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~~  455 (576)
                              +....+++.++..+...              +...++..++.+|+++++.....    -..+++.++..|++
T Consensus       537 --------~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~  608 (861)
T 2bpt_A          537 --------ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEK  608 (861)
T ss_dssp             --------HHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHS
T ss_pred             --------HHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcc
Confidence                    11234555566555421              12456778999999998755431    12467788888887


Q ss_pred             CCH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHhccchh
Q 041643          456 RNV-DVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQARALN  533 (576)
Q Consensus       456 ~~~-~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~  533 (576)
                      .+. .+++.+.++++.++..-   ..+...++-+  .+|.|...|...+. ++..++.++..++...+..-.-.-..+++
T Consensus       609 ~~~~~v~~~~~~~l~~l~~~~---~~~~~~~l~~--i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~  683 (861)
T 2bpt_A          609 KDSAFIEDDVFYAISALAASL---GKGFEKYLET--FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMN  683 (861)
T ss_dssp             TTGGGTHHHHHHHHHHHHHHH---GGGGHHHHHH--HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHH---hhhHHHHHHH--HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHH
Confidence            766 89999999999887321   1122333332  67788888865554 77788888888876555321101123334


Q ss_pred             hHh-hhhcccCCCCCcHHHHHHHHHHHHHhh
Q 041643          534 ALE-GAARTVLPQHPELRDLFAQAIYHLTLY  563 (576)
Q Consensus       534 ~Le-~~~~~~~~q~~~~~~l~~~a~~~l~~y  563 (576)
                      .|. .+....  -+++.+..+-.+++.+-.+
T Consensus       684 ~l~~~l~~~~--~~~~vr~~~~~~l~~l~~~  712 (861)
T 2bpt_A          684 VLAQMISNPN--ARRELKPAVLSVFGDIASN  712 (861)
T ss_dssp             HHHHHHHCTT--CCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcc--ccHhhhHHHHHHHHHHHHH
Confidence            433 322111  1356666666666666554

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.27  E-value=2.7e-05  Score=89.11  Aligned_cols=277  Identities=13%  Similarity=0.063  Sum_probs=170.7

Q ss_pred             HHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCcccH-HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-Cch
Q 041643          163 WVWSFISTIQMG--QIKSRVDAANELASLARDNNRNR-KIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QET  238 (576)
Q Consensus       163 ~v~~li~~L~~G--~~e~k~~AA~~L~~La~~~~~~~-~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~  238 (576)
                      ++..+...++.+  +.+.|..|..+|.++...-+.+- ........++.+.+++.+.+ ++.+..|..+|..+... ++.
T Consensus       173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence            344445677776  68889999999988774322111 01111124667777777767 89999999999999873 333


Q ss_pred             HHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHH----HHHHh----------------cCCchhHHHhhc
Q 041643          239 VRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQ----EEFVR----------------ENVTRSLISLLC  298 (576)
Q Consensus       239 ~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r----~~i~~----------------~g~I~~LV~LL~  298 (576)
                      -...+....++.+...+.+.++.++..+.+.+..++.......    +...+                ...+|.++.+|.
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~  331 (876)
T 1qgr_A          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  331 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence            2333444678888888888888999999999998885321100    00000                001111111111


Q ss_pred             cccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcC
Q 041643          299 MDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKG  378 (576)
Q Consensus       299 ~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g  378 (576)
                      ..                                              .   ..-+.++..    ++..|+.+|..|+..
T Consensus       332 ~~----------------------------------------------~---~d~~~~~~~----~r~~a~~~l~~l~~~  358 (876)
T 1qgr_A          332 KQ----------------------------------------------D---ENDDDDDWN----PCKAAGVCLMLLATC  358 (876)
T ss_dssp             CC----------------------------------------------C---SSCCTTCCC----HHHHHHHHHHHHHHH
T ss_pred             cc----------------------------------------------c---ccccccccH----HHHHHHHHHHHHHHH
Confidence            00                                              0   000011222    356788888888753


Q ss_pred             CcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc-hh----hhCcHHHHHHhh
Q 041643          379 CLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP-AK----EKRMIGPLVALL  453 (576)
Q Consensus       379 ~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~-~~----~~~~I~~LV~LL  453 (576)
                      ..+         .           ....+++.+...+.+.+ ..++..|+.++|+++.... ..    -..++|.|+..|
T Consensus       359 ~~~---------~-----------~~~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l  417 (876)
T 1qgr_A          359 CED---------D-----------IVPHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM  417 (876)
T ss_dssp             HGG---------G-----------GHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcH---------h-----------hHHHHHHHHHHHccCCC-hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            111         0           12346677777776644 8899999999999997654 21    125789999999


Q ss_pred             cCCCHHHHHHHHHHHHhhcCCCC-CC-CHHHHHHHHHCCCcHhHHHhhccChhHHHHHHHHHHHHhcc
Q 041643          454 SNRNVDVATEAVIALSKFVSPDN-FN-RSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALS  519 (576)
Q Consensus       454 ~~~~~~V~~eAa~AL~nla~~~n-~~-~~~~~~~Iv~~ggi~~Lv~LL~~~d~vq~~A~~~L~~lal~  519 (576)
                      ++.++.|+..|+|+|++++..-. +. ...+..     ..++.|+..|.....++..+++++.+++..
T Consensus       418 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~-----~~l~~l~~~l~~~~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLA-----PLLQCLIEGLSAEPRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH-----HHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999974210 00 001111     245677788866533888888888888643

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.26  E-value=5.9e-05  Score=86.26  Aligned_cols=292  Identities=11%  Similarity=0.080  Sum_probs=171.8

Q ss_pred             HHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCcccHHHHH--hcCCHHHHHHHHccCC-ChHHHHHHHHHHHHhhcCCc
Q 041643          163 WVWSFISTIQMG--QIKSRVDAANELASLARDNNRNRKIIV--EEGGILPLLKLLKEAA-SPDAQTAAANALFNIATDQE  237 (576)
Q Consensus       163 ~v~~li~~L~~G--~~e~k~~AA~~L~~La~~~~~~~~~I~--~~GgIppLV~LL~~g~-~~~~q~~AA~AL~nLa~~~~  237 (576)
                      ++-.++..+.++  +...|..+..+|..+...-..  ..+.  -...++.|++.|.++. +...+..|..+|.++...-.
T Consensus       129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (876)
T 1qgr_A          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            345557888888  889999999999998864211  1111  1234677888888762 38899999999999876311


Q ss_pred             -hH-HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHH
Q 041643          238 -TV-RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTI  315 (576)
Q Consensus       238 -~~-~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si  315 (576)
                       +- ........++.+.+++.+.+.+++..+..+|..++...+..-........++.++..+.                 
T Consensus       207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-----------------  269 (876)
T 1qgr_A          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-----------------  269 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT-----------------
T ss_pred             HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence             10 11111235777888888888899999999999998754432111111122222222221                 


Q ss_pred             HHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc-----hhcccch
Q 041643          316 HSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL-----WSAESNA  390 (576)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I-----avae~~~  390 (576)
                                                             ..|+.+    +..|.+.+..++.......     ...+...
T Consensus       270 ---------------------------------------~~~~~v----~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~  306 (876)
T 1qgr_A          270 ---------------------------------------SDIDEV----ALQGIEFWSNVCDEEMDLAIEASEAAEQGRP  306 (876)
T ss_dssp             ---------------------------------------CSSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             ---------------------------------------CCchHH----HHHHHHHHHHHHHHHHhHhhhhccccccCCC
Confidence                                                   123333    2445555555543210000     0000000


Q ss_pred             HHHHhhhccCchhHHHHHHHHHHHhhhc------CChhhHHHHHHHHHHHhcCCchh-hhCcHHHHHHhhcCCCHHHHHH
Q 041643          391 ELRRSAFKTNSPAAKAVLDQLLRLIHEE------SDAMLQTPAIRSIGCLAKTFPAK-EKRMIGPLVALLSNRNVDVATE  463 (576)
Q Consensus       391 ~lrr~a~k~~s~a~~~vV~~Ll~lL~~~------~~~~lq~~a~~aLgnLa~~~~~~-~~~~I~~LV~LL~~~~~~V~~e  463 (576)
                      ..+. .+....+..+.+++.+++.+...      ++..++..|..+++.++...... -..++|.+...|.+.+..++..
T Consensus       307 ~~~~-~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~  385 (876)
T 1qgr_A          307 PEHT-SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDA  385 (876)
T ss_dssp             CSSC-CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             ccch-hHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHH
Confidence            0000 00000012245677788877532      22467788889999998754421 1235566677788899999999


Q ss_pred             HHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccC
Q 041643          464 AVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAG  521 (576)
Q Consensus       464 Aa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~  521 (576)
                      |+++|+.++.+-   .++...... ...++.|+.+|...+. ++..|++++..++...+
T Consensus       386 a~~~l~~i~~~~---~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          386 AVMAFGCILEGP---EPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             HHHHHHHTSSSS---CHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHcCC---CHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence            999999998532   223222222 2368889999987666 88899999998875543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.10  E-value=0.00019  Score=81.79  Aligned_cols=269  Identities=13%  Similarity=0.103  Sum_probs=173.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCccc-HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCch---
Q 041643          163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRN-RKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET---  238 (576)
Q Consensus       163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~-~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~---  238 (576)
                      ++..+...++.++.+.|..|...|..++...+.. ...+ ....++.++..+.+.+ +..+..|...+..++.....   
T Consensus       225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~~~  302 (861)
T 2bpt_A          225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPN-DKVASMTVEFWSTICEEEIDIAY  302 (861)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHhhhh
Confidence            3444455677888999999999999888643322 2222 1145667777777777 89999999999988764211   


Q ss_pred             ---------------HHHHHHcCCHHHHHHhhcCC-------ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHh
Q 041643          239 ---------------VRFIVDVLGVPIIVSVLGEA-------PVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISL  296 (576)
Q Consensus       239 ---------------~~~iv~~Gavp~LV~lL~s~-------~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~L  296 (576)
                                     ....+ ...+|.++..|...       +..++..++.+|..++...+        ...++.++.+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--------~~~~~~l~~~  373 (861)
T 2bpt_A          303 ELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--------NHILEPVLEF  373 (861)
T ss_dssp             HHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--------GGGHHHHHHH
T ss_pred             hhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--------HhHHHHHHHH
Confidence                           11111 44688888888653       23678888999998885321        1245566665


Q ss_pred             hccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhh
Q 041643          297 LCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLS  376 (576)
Q Consensus       297 L~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La  376 (576)
                      +...-                                                    ...+..    .+..|++++..++
T Consensus       374 l~~~l----------------------------------------------------~~~~~~----~r~~a~~~l~~i~  397 (861)
T 2bpt_A          374 VEQNI----------------------------------------------------TADNWR----NREAAVMAFGSIM  397 (861)
T ss_dssp             HHHHT----------------------------------------------------TCSSHH----HHHHHHHHHHHTS
T ss_pred             HHHHc----------------------------------------------------CCCChh----HHHHHHHHHHHHH
Confidence            53110                                                    001222    4578999999998


Q ss_pred             cCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch------hhhCcHHHHH
Q 041643          377 KGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA------KEKRMIGPLV  450 (576)
Q Consensus       377 ~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~------~~~~~I~~LV  450 (576)
                      .+....        .+..        ....+++.|+..+.+.+ +.++..++.++|+++.....      .-..++|.|+
T Consensus       398 ~~~~~~--------~~~~--------~l~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~  460 (861)
T 2bpt_A          398 DGPDKV--------QRTY--------YVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACL  460 (861)
T ss_dssp             SSSCHH--------HHHH--------HHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHH
T ss_pred             cCCCHH--------HHHH--------HHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence            763210        1111        12356788888887654 88999999999999875321      1125688999


Q ss_pred             HhhcCCCHHHHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHCCCcHhHHHhhccCh--h-HHHHHHHHHHHHhcccCc
Q 041643          451 ALLSNRNVDVATEAVIALSKFVSP-----DNFNRSEHSKAIIEFDGVPPLMRLLKISD--R-AQVHGLVFLCYLALSAGN  522 (576)
Q Consensus       451 ~LL~~~~~~V~~eAa~AL~nla~~-----~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d--~-vq~~A~~~L~~lal~~~~  522 (576)
                      +.|++. +.++..|+|+|.+++..     .+.+. .+...     .++.|++++...+  . ++..++.++..++...++
T Consensus       461 ~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~-~~~~~-----il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~  533 (861)
T 2bpt_A          461 IGLQDH-PKVATNCSWTIINLVEQLAEATPSPIY-NFYPA-----LVDGLIGAANRIDNEFNARASAFSALTTMVEYATD  533 (861)
T ss_dssp             HHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGG-GGHHH-----HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred             HHhccC-hHHHHHHHHHHHHHHHhcccccchhhH-HHHHH-----HHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence            999775 89999999999998732     11110 11222     3567888887433  4 888888888888765554

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.99  E-value=0.0026  Score=71.27  Aligned_cols=281  Identities=17%  Similarity=0.155  Sum_probs=175.7

Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHH--ccCCChHHHHHHHHHHHHhhc-CC
Q 041643          160 ILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLL--KEAASPDAQTAAANALFNIAT-DQ  236 (576)
Q Consensus       160 i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL--~~g~~~~~q~~AA~AL~nLa~-~~  236 (576)
                      +...+..+..-|++.++-.+..|.++|+++..  ++.    .+ ..+|++.++|  .+.+ +-+++.|+.|+.++.. ++
T Consensus       109 ~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~----~~-~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p  180 (621)
T 2vgl_A          109 IRLINNAIKNDLASRNPTFMGLALHCIANVGS--REM----AE-AFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSP  180 (621)
T ss_dssp             HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHH----HH-HHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHH----HH-HHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhCh
Confidence            34445555667888899999999999999853  332    22 3568999999  6667 9999999999999987 33


Q ss_pred             chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhc----cccc--cCCCc-c-
Q 041643          237 ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC----MDIA--LDLPK-P-  308 (576)
Q Consensus       237 ~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~----~~t~--~~~~~-~-  308 (576)
                      +...   ..+.++.+.++|.+.+..|+..|..++..++..++..   +  ...+|.+++.|.    .+..  .++.. . 
T Consensus       181 ~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~  252 (621)
T 2vgl_A          181 DLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFV  252 (621)
T ss_dssp             GGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTE
T ss_pred             hhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCC
Confidence            3221   2588999999999999999999999999999766542   1  134566665553    1110  11100 0 


Q ss_pred             -hhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHH-------------------------
Q 041643          309 -ESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKA-------------------------  362 (576)
Q Consensus       309 -i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~-------------------------  362 (576)
                       ..|.. +. ++..-....                           ..+|++.+.                         
T Consensus       253 ~~~w~q-i~-il~ll~~~~---------------------------~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~  303 (621)
T 2vgl_A          253 PAPWLS-VK-LLRLLQCYP---------------------------PPEDPAVRGRLTECLETILNKAQEPPKSKKVQHS  303 (621)
T ss_dssp             ESHHHH-HH-HHHHGGGSS---------------------------SCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHH
T ss_pred             CCchHH-HH-HHHHHHHhC---------------------------CCCCHHHHHHHHHHHHHHHHhhccCccccccccc
Confidence             01111 00 000000000                           001222211                         


Q ss_pred             ----HHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCC
Q 041643          363 ----KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTF  438 (576)
Q Consensus       363 ----~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~  438 (576)
                          .+.-.|+.+++++..           .++++           +..+..|.++|.+.+ +.+++.++++|..++...
T Consensus       304 n~~~aVl~ea~~~i~~l~~-----------~~~~~-----------~~~~~~L~~~L~~~~-~niry~aL~~l~~l~~~~  360 (621)
T 2vgl_A          304 NAKNAVLFEAISLIIHHDS-----------EPNLL-----------VRACNQLGQFLQHRE-TNLRYLALESMCTLASSE  360 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHCC-----------CHHHH-----------HHHHHHHHHHSSCSC-HHHHHHHHHHHHHHTTCT
T ss_pred             chHHHHHHHHHHHHHhcCC-----------cHHHH-----------HHHHHHHHHHhcCCC-cchHHHHHHHHHHHHhcc
Confidence                111234455554431           12333           345778888887655 899999999999998765


Q ss_pred             chh--hhCcHHHHHHhhc-CCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHH
Q 041643          439 PAK--EKRMIGPLVALLS-NRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLC  514 (576)
Q Consensus       439 ~~~--~~~~I~~LV~LL~-~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~  514 (576)
                      +..  -....+.++..|+ +.+..|+..|...|.+++.      .++.+.|++     .|...+...|. .+..++.+++
T Consensus       361 ~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~------~~Nv~~Iv~-----eL~~yl~~~d~~~~~~~v~~I~  429 (621)
T 2vgl_A          361 FSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD------RSNAQQIVA-----EMLSYLETADYSIREEIVLKVA  429 (621)
T ss_dssp             TTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC------HHHHHHHHH-----HHHHHHHHCCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC------hhhHHHHHH-----HHHHHHHhcCHHHHHHHHHHHH
Confidence            421  1245677888888 8999999999999999974      344555543     45555554454 6666677777


Q ss_pred             HHhcc
Q 041643          515 YLALS  519 (576)
Q Consensus       515 ~lal~  519 (576)
                      .++..
T Consensus       430 ~la~k  434 (621)
T 2vgl_A          430 ILAEK  434 (621)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77643

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.97  E-value=0.0011  Score=77.07  Aligned_cols=199  Identities=14%  Similarity=0.099  Sum_probs=136.5

Q ss_pred             CHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhh-cCCChhHHHHHHHHHHHHhcCChHHHHH
Q 041643          205 GILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVL-GEAPVKVQVAVANLVARMAELDSIAQEE  283 (576)
Q Consensus       205 gIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL-~s~~~~vq~~Aa~aL~~LA~~~~~~r~~  283 (576)
                      .++.|+.+|.+.+ ....+.|+.+|+.+-..+.+..      ++..|++.+ .+.++.++..++.+|+-+....+     
T Consensus       473 v~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~-----  540 (963)
T 4ady_A          473 VYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQ-----  540 (963)
T ss_dssp             HHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG-----
T ss_pred             HHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh-----
Confidence            4678888888777 6667789999987755555544      345556654 34567888889999988875543     


Q ss_pred             HHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHH
Q 041643          284 FVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAK  363 (576)
Q Consensus       284 i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~  363 (576)
                          ..++.+++.|...                                                       +||-+|  
T Consensus       541 ----e~~~~li~~L~~~-------------------------------------------------------~dp~vR--  559 (963)
T 4ady_A          541 ----ELADDLITKMLAS-------------------------------------------------------DESLLR--  559 (963)
T ss_dssp             ----GGGHHHHHHHHHC-------------------------------------------------------SCHHHH--
T ss_pred             ----HHHHHHHHHHHhC-------------------------------------------------------CCHHHH--
Confidence                3578888888532                                                       233333  


Q ss_pred             HHHHHHHHHH--HhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh
Q 041643          364 VRIACAEALW--KLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK  441 (576)
Q Consensus       364 ~k~~Aa~ALw--~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~  441 (576)
                        -.++.|+.  +.-.||.                         ..|+.|+..+.+..++.++..|+.+||.++-..   
T Consensus       560 --ygaa~alglAyaGTGn~-------------------------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~---  609 (963)
T 4ady_A          560 --YGGAFTIALAYAGTGNN-------------------------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD---  609 (963)
T ss_dssp             --HHHHHHHHHHTTTSCCH-------------------------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS---
T ss_pred             --HHHHHHHHHHhcCCCCH-------------------------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC---
Confidence              34555544  3323321                         347778877766666789999999999986432   


Q ss_pred             hhCcHHHHHHhh-cCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhc
Q 041643          442 EKRMIGPLVALL-SNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLAL  518 (576)
Q Consensus       442 ~~~~I~~LV~LL-~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal  518 (576)
                       ..+++.++.+| ++.++.|+..|++||+.+.. +|..     ..     .+..|..|++..+. |...|+.+|+.+..
T Consensus       610 -~e~v~rlv~~L~~~~d~~VR~gAalALGli~a-Gn~~-----~~-----aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          610 -YTTVPRIVQLLSKSHNAHVRCGTAFALGIACA-GKGL-----QS-----AIDVLDPLTKDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             -CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS-SSCC-----HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CCCc-----HH-----HHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence             24799999855 67899999999999998854 3321     22     34467788876666 88889999988853

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.75  E-value=0.00061  Score=73.56  Aligned_cols=259  Identities=14%  Similarity=0.125  Sum_probs=152.3

Q ss_pred             HHHHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCC--HHHHHHHHcc---------------CC-ChHHHHHHH
Q 041643          166 SFISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGG--ILPLLKLLKE---------------AA-SPDAQTAAA  226 (576)
Q Consensus       166 ~li~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~Gg--IppLV~LL~~---------------g~-~~~~q~~AA  226 (576)
                      .++..|+.. +...+.-++..|..|.+. +++|..+.+.++  +|+++++++.               +. ....|.++.
T Consensus       171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            356777763 344455678888888886 889999987655  8888876652               11 245689999


Q ss_pred             HHHHHhhcCCchHHHHHHcCCH--HHHHHhhcC-CChhHHHHHHHHHHHHhcCChHH-----HHHHHhcCCchhHHHhhc
Q 041643          227 NALFNIATDQETVRFIVDVLGV--PIIVSVLGE-APVKVQVAVANLVARMAELDSIA-----QEEFVRENVTRSLISLLC  298 (576)
Q Consensus       227 ~AL~nLa~~~~~~~~iv~~Gav--p~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~-----r~~i~~~g~I~~LV~LL~  298 (576)
                      -+++-|+-+++..+.+.+.+.+  +.|+++++. ..+.+-..+..++.|+....+..     .+.+...++ +++++.|.
T Consensus       250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~  328 (480)
T 1ho8_A          250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS  328 (480)
T ss_dssp             HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred             HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence            9999999988888888888754  678888876 45888899999999999765321     223333444 66777775


Q ss_pred             cccccCCCc-chhhh-hHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHH-h
Q 041643          299 MDIALDLPK-PESAK-TTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWK-L  375 (576)
Q Consensus       299 ~~t~~~~~~-~i~~~-~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~-L  375 (576)
                      ...   .+. .+..- ..++..+.-...                           ..-..|        +.++.-... |
T Consensus       329 ~rk---~~Dedl~edl~~L~e~L~~~~~---------------------------~ltsfD--------eY~~El~sG~L  370 (480)
T 1ho8_A          329 ERK---YSDEELRQDISNLKEILENEYQ---------------------------ELTSFD--------EYVAELDSKLL  370 (480)
T ss_dssp             SSC---CSSHHHHHHHHHHHHHHHHHHH---------------------------TCCHHH--------HHHHHHHHTCC
T ss_pred             hCC---CCcHHHHHHHHHHHHHHHHHHH---------------------------hcccHH--------HHHHHHhcCCc
Confidence            432   110 01100 011110000000                           000000        011111110 0


Q ss_pred             hcCCcccchhcccchHHHH--hhhccCchhHHHHHHHHHHHhhh---------cCChhhHHHHHHHHHHHhcCCchh---
Q 041643          376 SKGCLLSLWSAESNAELRR--SAFKTNSPAAKAVLDQLLRLIHE---------ESDAMLQTPAIRSIGCLAKTFPAK---  441 (576)
Q Consensus       376 a~g~~~~Iavae~~~~lrr--~a~k~~s~a~~~vV~~Ll~lL~~---------~~~~~lq~~a~~aLgnLa~~~~~~---  441 (576)
                      .-++...     ...--|.  ..|..+-   -.++..|+.+|.+         ++++.++.-|+-=||.+++..|..   
T Consensus       371 ~WSP~H~-----se~FW~ENa~kf~e~~---~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i  442 (480)
T 1ho8_A          371 CWSPPHV-----DNGFWSDNIDEFKKDN---YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDV  442 (480)
T ss_dssp             CCCGGGG-----CHHHHHHHSGGGSSGG---GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             ccCCCcc-----chhHHHHHHHHHHhcc---hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHH
Confidence            1011110     0000000  0021110   1467888888874         223667777788899999987752   


Q ss_pred             --hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          442 --EKRMIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       442 --~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                        +-|+=..+-+||.+.+++|+.+|-.|+.++-
T Consensus       443 ~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          443 LDKTGGKADIMELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             HHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence              2355566778999999999999999998874

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.67  E-value=2.4e-05  Score=69.38  Aligned_cols=85  Identities=20%  Similarity=0.274  Sum_probs=69.9

Q ss_pred             HHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 041643          408 LDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAII  487 (576)
Q Consensus       408 V~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv  487 (576)
                      ++.|+++|.+.+ +.++..|+++||++.      +...+++|+.+|++.++.|+..|+|+|+++..      +       
T Consensus        44 ~~~L~~~L~d~~-~~vR~~A~~aL~~~~------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------~-------  103 (131)
T 1te4_A           44 FEPLLESLSNED-WRIRGAAAWIIGNFQ------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------E-------  103 (131)
T ss_dssp             HHHHHHGGGCSC-HHHHHHHHHHHGGGC------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------H-------
T ss_pred             HHHHHHHHcCCC-HHHHHHHHHHHHhcC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------H-------
Confidence            477888888654 899999999999985      24579999999999999999999999999852      1       


Q ss_pred             HCCCcHhHHHhhccChh-HHHHHHHHHH
Q 041643          488 EFDGVPPLMRLLKISDR-AQVHGLVFLC  514 (576)
Q Consensus       488 ~~ggi~~Lv~LL~~~d~-vq~~A~~~L~  514 (576)
                        +.++.|+++|+..+. ++..|..+|.
T Consensus       104 --~a~~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A          104 --RVRAAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             --HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             --HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence              257889999987766 8888888764

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.64  E-value=0.00042  Score=83.13  Aligned_cols=272  Identities=12%  Similarity=0.086  Sum_probs=170.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643          164 VWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIV  243 (576)
Q Consensus       164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv  243 (576)
                      +-.++..+.+.+.+.|..|...|.+....+...-..-.....++.|++.|.+.+ +..|..|+.+|.+++..-.. . .+
T Consensus         8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~-~-~~   84 (1230)
T 1u6g_C            8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE-Y-QV   84 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH-H-HH
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH-H-HH
Confidence            345577888899999999999998765432110000011235788999998777 99999999999999974322 1 11


Q ss_pred             HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHH------HHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHH
Q 041643          244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIA------QEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHS  317 (576)
Q Consensus       244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~------r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~  317 (576)
                       ...++.|...|.+++..++..++.+|+.++...+..      .... -...+|.|+..+..                  
T Consensus        85 -~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~------------------  144 (1230)
T 1u6g_C           85 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAK------------------  144 (1230)
T ss_dssp             -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSC------------------
T ss_pred             -HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcC------------------
Confidence             225678888888888889999999999988643221      0001 11244555554421                  


Q ss_pred             HHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhh
Q 041643          318 LVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAF  397 (576)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~  397 (576)
                                                           .+++.    ++..|..+|..++......              +
T Consensus       145 -------------------------------------~~~~~----~~~~al~~l~~~~~~~~~~--------------l  169 (1230)
T 1u6g_C          145 -------------------------------------QEDVS----VQLEALDIMADMLSRQGGL--------------L  169 (1230)
T ss_dssp             -------------------------------------CSCHH----HHHHHHHHHHHHHHHTCSS--------------C
T ss_pred             -------------------------------------CCchH----HHHHHHHHHHHHHHHhHhH--------------H
Confidence                                                 11333    3567888888887421111              1


Q ss_pred             ccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhh-hCcHHHHHHhhcCC-CHHHHHHHHHHHHhhcCCC
Q 041643          398 KTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE-KRMIGPLVALLSNR-NVDVATEAVIALSKFVSPD  475 (576)
Q Consensus       398 k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~-~~~I~~LV~LL~~~-~~~V~~eAa~AL~nla~~~  475 (576)
                      .   |....+++.|+..+.+.+ +.++..|+.+|+.++....... ..+++.|+..|... +..++..|+.+++.++..-
T Consensus       170 ~---~~~~~ll~~l~~~L~~~~-~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~  245 (1230)
T 1u6g_C          170 V---NFHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA  245 (1230)
T ss_dssp             T---TTHHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred             H---HHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh
Confidence            1   122357888888887654 7899999999999997544321 24688898888543 2356777888888776311


Q ss_pred             CCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCc
Q 041643          476 NFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGN  522 (576)
Q Consensus       476 n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~  522 (576)
                         ......++  ...++.+++.+...+. ++..++.++..++...+.
T Consensus       246 ---~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~  288 (1230)
T 1u6g_C          246 ---GHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  288 (1230)
T ss_dssp             ---SGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             ---HHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence               00000001  3466777788875555 777788877777654443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.61  E-value=5.5e-05  Score=67.05  Aligned_cols=86  Identities=16%  Similarity=0.156  Sum_probs=72.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHH
Q 041643          165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVD  244 (576)
Q Consensus       165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~  244 (576)
                      ..++..|+..+...|..|+..|+.+..           ...+++|+++|++.+ +.++..|+++|+++..          
T Consensus        45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L~d~~-~~VR~~A~~aL~~~~~----------  102 (131)
T 1te4_A           45 EPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDS-GFVRSGAARSLEQIGG----------  102 (131)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCC-THHHHHHHHHHHHHCS----------
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc----------
Confidence            445788898899999999999987742           235899999999888 9999999999999862          


Q ss_pred             cCCHHHHHHhhcCCChhHHHHHHHHHHH
Q 041643          245 VLGVPIIVSVLGEAPVKVQVAVANLVAR  272 (576)
Q Consensus       245 ~Gavp~LV~lL~s~~~~vq~~Aa~aL~~  272 (576)
                      ..+++.|+++|++.+..++..|+++|++
T Consensus       103 ~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A          103 ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            2368999999999889999999998864

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.54  E-value=0.002  Score=62.66  Aligned_cols=175  Identities=16%  Similarity=0.147  Sum_probs=122.0

Q ss_pred             HHHHHHccCCChHHHHHHHHHHHHhhcC-CchH-HHHHHcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHH
Q 041643          208 PLLKLLKEAASPDAQTAAANALFNIATD-QETV-RFIVDVLGVPIIVSVLG-EAPVKVQVAVANLVARMAELDSIAQEEF  284 (576)
Q Consensus       208 pLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~-~~iv~~Gavp~LV~lL~-s~~~~vq~~Aa~aL~~LA~~~~~~r~~i  284 (576)
                      .+.+.+.+.+ ...+..|+.+|..+... ++.. ...  ...++.|..+|. +.+..++..|+.+|+.|+..   .+..+
T Consensus        19 ~l~~~l~s~~-w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~---l~~~~   92 (242)
T 2qk2_A           19 DFYDKLEEKK-WTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKG---LAKRF   92 (242)
T ss_dssp             THHHHHTCSS-HHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH---HGGGG
T ss_pred             HHHhhhccCC-HHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH---HhhhH
Confidence            4888888777 89999999999999874 3211 001  124677888884 88999999999999999942   11111


Q ss_pred             Hh--cCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHH
Q 041643          285 VR--ENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKA  362 (576)
Q Consensus       285 ~~--~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~  362 (576)
                      ..  ...+|+|+..+..                                                        .++    
T Consensus        93 ~~~~~~ilp~ll~~l~d--------------------------------------------------------~~~----  112 (242)
T 2qk2_A           93 SNYASACVPSLLEKFKE--------------------------------------------------------KKP----  112 (242)
T ss_dssp             HHHHHHHHHHHHHGGGC--------------------------------------------------------CCH----
T ss_pred             HHHHHHHHHHHHHHHcC--------------------------------------------------------CCH----
Confidence            11  1234444444421                                                        112    


Q ss_pred             HHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCC-chh
Q 041643          363 KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTF-PAK  441 (576)
Q Consensus       363 ~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~-~~~  441 (576)
                      .++..|..||..+.....                       ...+++.|+..+.+. ++.++..++..|+.+...+ +..
T Consensus       113 ~vr~~a~~aL~~~~~~~~-----------------------~~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A          113 NVVTALREAIDAIYASTS-----------------------LEAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHHHHHHTTSC-----------------------HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHHHHcCC-----------------------HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence            245788899988865310                       124788888888865 4899999999999976543 221


Q ss_pred             -----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          442 -----EKRMIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       442 -----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                           -..++|.|+.+|.+++.+|+..|..+|+.++
T Consensus       169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~  204 (242)
T 2qk2_A          169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI  204 (242)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence                 1247899999999999999999999999886

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.41  E-value=0.018  Score=54.74  Aligned_cols=213  Identities=15%  Similarity=0.206  Sum_probs=139.1

Q ss_pred             hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhh-cCCChhHHHHHHHHHHHHhcCChH
Q 041643          202 EEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVL-GEAPVKVQVAVANLVARMAELDSI  279 (576)
Q Consensus       202 ~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL-~s~~~~vq~~Aa~aL~~LA~~~~~  279 (576)
                      +...+..|+++|+++- =.+|+||...|.+++. .++-...++.     -|.-++ ++....+-...+.+++.+|.-.|+
T Consensus        30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl~~-----kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPMLK-----KLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHHHH-----HHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHHHH-----HHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            3445788999998776 7799999999999998 4555554432     334444 566666766778889999976664


Q ss_pred             HHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHH
Q 041643          280 AQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPE  359 (576)
Q Consensus       280 ~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~  359 (576)
                               .|+++|..|..+-                                                 +   .-||.
T Consensus       104 ---------~v~~vVp~lfany-------------------------------------------------r---igd~k  122 (253)
T 2db0_A          104 ---------LVKSMIPVLFANY-------------------------------------------------R---IGDEK  122 (253)
T ss_dssp             ---------HHHHHHHHHHHHS-------------------------------------------------C---CCSHH
T ss_pred             ---------HHHhhHHHHHHHH-------------------------------------------------h---cCCcc
Confidence                     3567777663210                                                 0   11555


Q ss_pred             HHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc
Q 041643          360 VKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP  439 (576)
Q Consensus       360 vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~  439 (576)
                      +    |.+-+.+|-.++..|+          .+-           ..++.-+..++++.+ ..-...|+.-|+.+..+..
T Consensus       123 i----kIn~~yaLeeIaranP----------~l~-----------~~v~rdi~smltskd-~~Dkl~aLnFi~alGen~~  176 (253)
T 2db0_A          123 T----KINVSYALEEIAKANP----------MLM-----------ASIVRDFMSMLSSKN-REDKLTALNFIEAMGENSF  176 (253)
T ss_dssp             H----HHHHHHHHHHHHHHCH----------HHH-----------HHHHHHHHHHTSCSS-HHHHHHHHHHHHTCCTTTH
T ss_pred             c----eecHHHHHHHHHHhCh----------HHH-----------HHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhccCc
Confidence            4    4677888887766543          332           357788888888655 4445556666666654333


Q ss_pred             hhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHh
Q 041643          440 AKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLA  517 (576)
Q Consensus       440 ~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~la  517 (576)
                      .--+-.+|.|..||..++.-|+..|..+|.++|...    +.-++.|.+      -++=++..+. +|..--..|..++
T Consensus       177 ~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n----pklRkii~~------kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          177 KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN----DKLRKVVIK------RLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC----HHHHHHHHH------HHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             cccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC----HHHHHHHHH------HHHHhcCcHHHHHHHHHHHHHHHH
Confidence            222346899999999999999999999999999632    566666543      1222222223 7766555555554

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.28  E-value=0.0016  Score=78.09  Aligned_cols=226  Identities=15%  Similarity=0.122  Sum_probs=148.5

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchH-
Q 041643          161 LAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETV-  239 (576)
Q Consensus       161 ~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~-  239 (576)
                      ..++..++..|...+.+.|..|+.+|..++..-++  ..+  ...++.|+..|.+++ +..+..|+.+|..++..-... 
T Consensus        47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~-~~vR~~a~~~L~~i~~~l~~~~  121 (1230)
T 1u6g_C           47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPAS  121 (1230)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCCcc
Confidence            34555567778888999999999999999864322  111  225678888888877 888999999999998632111 


Q ss_pred             -----HHHHHcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhh
Q 041643          240 -----RFIVDVLGVPIIVSVLG-EAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKT  313 (576)
Q Consensus       240 -----~~iv~~Gavp~LV~lL~-s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~  313 (576)
                           ..-.-...+|.|.+.+. +++..++..|..++..++...+..   +.  ..++.++..|-.              
T Consensus       122 ~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~---l~--~~~~~ll~~l~~--------------  182 (1230)
T 1u6g_C          122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL---LV--NFHPSILTCLLP--------------  182 (1230)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS---CT--TTHHHHHHHHGG--------------
T ss_pred             cccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH---HH--HHHHHHHHHHHH--------------
Confidence                 11112346899999998 577899999999999988532110   00  011223322210              


Q ss_pred             HHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHH
Q 041643          314 TIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELR  393 (576)
Q Consensus       314 si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lr  393 (576)
                                                            .....++.    ++..|+.||..++....+.         + 
T Consensus       183 --------------------------------------~L~~~~~~----vR~~a~~al~~l~~~~~~~---------~-  210 (1230)
T 1u6g_C          183 --------------------------------------QLTSPRLA----VRKRTIIALGHLVMSCGNI---------V-  210 (1230)
T ss_dssp             --------------------------------------GGGCSSHH----HHHHHHHHHHHHTTTC--------------
T ss_pred             --------------------------------------HHcCCcHH----HHHHHHHHHHHHHHhcCHH---------H-
Confidence                                                  01112333    4578999999987643211         1 


Q ss_pred             HhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 041643          394 RSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSNRNVDVATEAVIALS  469 (576)
Q Consensus       394 r~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~~~~~~V~~eAa~AL~  469 (576)
                         |       ..+++.|+..|.+.+++.+...++.+++.+++..+..    -..++|.+++.+.+.+++++..|.+++.
T Consensus       211 ---~-------~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~  280 (1230)
T 1u6g_C          211 ---F-------VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE  280 (1230)
T ss_dssp             ---C-------TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHH
T ss_pred             ---H-------HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence               1       1357788887766543456677889999998754321    1357899999998888899999999998


Q ss_pred             hhc
Q 041643          470 KFV  472 (576)
Q Consensus       470 nla  472 (576)
                      .++
T Consensus       281 ~l~  283 (1230)
T 1u6g_C          281 SFV  283 (1230)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.27  E-value=0.022  Score=66.37  Aligned_cols=235  Identities=12%  Similarity=0.054  Sum_probs=124.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHH
Q 041643          165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVD  244 (576)
Q Consensus       165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~  244 (576)
                      ..+..+|...+...+..|+.+|+-+-.. ..|.+      +|..|+..+.+..+......++.+|+.|....+       
T Consensus       475 e~L~~~L~dd~~~~~~~AalALGli~vG-Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~-------  540 (963)
T 4ady_A          475 EALKEVLYNDSATSGEAAALGMGLCMLG-TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQ-------  540 (963)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHTT-CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG-------
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhhcc-cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh-------
Confidence            3346778877777778888888866443 23322      356777766555437888889999988865332       


Q ss_pred             cCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhc
Q 041643          245 VLGVPIIVSVLG-EAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK  323 (576)
Q Consensus       245 ~Gavp~LV~lL~-s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~  323 (576)
                       .+++.+++.|. +.++-++..++.+++--.. +..+.      .+|+.|+..+.++.. ++.+. ..-.++.-+ ....
T Consensus       541 -e~~~~li~~L~~~~dp~vRygaa~alglAya-GTGn~------~aIq~LL~~~~~d~~-d~VRr-aAViaLGlI-~~g~  609 (963)
T 4ady_A          541 -ELADDLITKMLASDESLLRYGGAFTIALAYA-GTGNN------SAVKRLLHVAVSDSN-DDVRR-AAVIALGFV-LLRD  609 (963)
T ss_dssp             -GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTT-TSCCH------HHHHHHHHHHHHCSC-HHHHH-HHHHHHHHH-TSSS
T ss_pred             -HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-CCCCH------HHHHHHHHHhccCCc-HHHHH-HHHHHHHhh-ccCC
Confidence             14556666765 3556777777766653222 12221      235556665543310 00000 000011100 0000


Q ss_pred             cccccccccCCCCCCCCCCCCCCCC-cccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCch
Q 041643          324 EMTEKSTNVTNNSDGSSRGGHGQHY-NKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP  402 (576)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~  402 (576)
                      . .                  -.+. +....+..||.+|    ..|+.||..++.|+..                     
T Consensus       610 ~-e------------------~v~rlv~~L~~~~d~~VR----~gAalALGli~aGn~~---------------------  645 (963)
T 4ady_A          610 Y-T------------------TVPRIVQLLSKSHNAHVR----CGTAFALGIACAGKGL---------------------  645 (963)
T ss_dssp             C-S------------------SHHHHTTTGGGCSCHHHH----HHHHHHHHHHTSSSCC---------------------
T ss_pred             H-H------------------HHHHHHHHHHhcCCHHHH----HHHHHHHHHhccCCCc---------------------
Confidence            0 0                  0000 0012234566654    6788888888776532                     


Q ss_pred             hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHH----HHHhhc--CCCHHHHHHHHHHHHhh
Q 041643          403 AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGP----LVALLS--NRNVDVATEAVIALSKF  471 (576)
Q Consensus       403 a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~----LV~LL~--~~~~~V~~eAa~AL~nl  471 (576)
                        ..+++.|-++..+.+ +.+...|+-+||.+.-...+....-+..    |.....  +.+...+-.|..|.+-+
T Consensus       646 --~~aid~L~~L~~D~d-~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll  717 (963)
T 4ady_A          646 --QSAIDVLDPLTKDPV-DFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM  717 (963)
T ss_dssp             --HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHccCCC-HHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence              135676666666554 7788888888888864322211111333    333332  34566677777777744

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.26  E-value=0.0098  Score=58.49  Aligned_cols=184  Identities=19%  Similarity=0.210  Sum_probs=135.9

Q ss_pred             CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC-chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHH
Q 041643          204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQ-ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQE  282 (576)
Q Consensus       204 GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~-~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~  282 (576)
                      +.+..|+.||.+.+ +..|.+|..+|.++-+.- +..+...=...++.++.++++.++.+.-.|..+|..|-.+.|-.-.
T Consensus        33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            36788999998888 999999999999999852 3333333345899999999999999999999999998876554444


Q ss_pred             HHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHH
Q 041643          283 EFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKA  362 (576)
Q Consensus       283 ~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~  362 (576)
                      .+.+  .+..|++++.++                                                        ++    
T Consensus       112 ~y~K--l~~aL~dlik~~--------------------------------------------------------~~----  129 (265)
T 3b2a_A          112 TFLK--AAKTLVSLLESP--------------------------------------------------------DD----  129 (265)
T ss_dssp             HHHH--HHHHHHHHTTSC--------------------------------------------------------CH----
T ss_pred             HHHH--HHHHHHHHhcCC--------------------------------------------------------Cc----
Confidence            4433  235555555322                                                        11    


Q ss_pred             HHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-
Q 041643          363 KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-  441 (576)
Q Consensus       363 ~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-  441 (576)
                      -+...|+..|..|.   ..                   + ..+.+++.|.+++ ++++..++..+++++-|++....+. 
T Consensus       130 il~~eaae~Lgklk---v~-------------------~-~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~~  185 (265)
T 3b2a_A          130 MMRIETIDVLSKLQ---PL-------------------E-DSKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADSG  185 (265)
T ss_dssp             HHHHHHHHHHHHCC---BS-------------------C-CCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred             hHHHHHHHHhCcCC---cc-------------------c-chHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCHH
Confidence            13457888888772   11                   1 1246899999999 4556999999999999999755432 


Q ss_pred             -hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCC
Q 041643          442 -EKRMIGPLVALLSNRNVDVATEAVIALSKFVSP  474 (576)
Q Consensus       442 -~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~  474 (576)
                       -+.++..+-.+|++.++.+.+-|--+|-.+.+-
T Consensus       186 i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          186 HLTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence             235667777889999999999999999999863

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.07  E-value=0.01  Score=57.56  Aligned_cols=185  Identities=15%  Similarity=0.142  Sum_probs=122.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHc-cCCChHHHHHHHHHHHHhhcCCch-HHHHHHc
Q 041643          168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLK-EAASPDAQTAAANALFNIATDQET-VRFIVDV  245 (576)
Q Consensus       168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~-~g~~~~~q~~AA~AL~nLa~~~~~-~~~iv~~  245 (576)
                      ...+++.+-..|..|+..|..+....+.....-. ...++.|.++|. +.+ ..++..|+.+|..|+..-.. -... -.
T Consensus        21 ~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~~-~~   97 (242)
T 2qk2_A           21 YDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSNY-AS   97 (242)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHHH-HH
T ss_pred             HhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHHH-HH
Confidence            6788888999999999999998875322110000 123677888884 667 99999999999999963211 1111 12


Q ss_pred             CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccc
Q 041643          246 LGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEM  325 (576)
Q Consensus       246 Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~  325 (576)
                      -.+|.+.+.|++.+..+++.+..+|..++...+ ..      ..++.|...|+                           
T Consensus        98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l~---------------------------  143 (242)
T 2qk2_A           98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESLS---------------------------  143 (242)
T ss_dssp             HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHTT---------------------------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHHc---------------------------
Confidence            368999999999999999999999999986431 11      12233333331                           


Q ss_pred             cccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCC-cccchhcccchHHHHhhhccCchhH
Q 041643          326 TEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGC-LLSLWSAESNAELRRSAFKTNSPAA  404 (576)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~-~~~Iavae~~~~lrr~a~k~~s~a~  404 (576)
                                                   ..++.    +|..+...|..+.... ++..             +   .+-.
T Consensus       144 -----------------------------~~~~~----vr~~~l~~l~~~l~~~~~~~~-------------~---~~~l  174 (242)
T 2qk2_A          144 -----------------------------NKNPS----VKSETALFIARALTRTQPTAL-------------N---KKLL  174 (242)
T ss_dssp             -----------------------------CSCHH----HHHHHHHHHHHHHTTCCGGGC-------------C---HHHH
T ss_pred             -----------------------------CCChH----HHHHHHHHHHHHHHHcCCCCc-------------c---HHHH
Confidence                                         11333    4577888888754321 1100             0   0112


Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc
Q 041643          405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP  439 (576)
Q Consensus       405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~  439 (576)
                      ..+++.|+.++.+.+ +.++..|..++|.+++...
T Consensus       175 ~~l~p~l~~~l~D~~-~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          175 KLLTTSLVKTLNEPD-PTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             HHHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHcC
Confidence            357888999997655 8899999999999986443

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=96.97  E-value=0.017  Score=64.66  Aligned_cols=252  Identities=18%  Similarity=0.175  Sum_probs=161.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 041643          168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG  247 (576)
Q Consensus       168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga  247 (576)
                      +..+++.+.+.|.-.--.+..++..++   +.+.-  .+..|.+=|.+.+ +-.+-.|.++|+++.. ++    +++ ..
T Consensus        80 vkl~~s~~~~~Krl~YL~l~~~~~~~~---e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~-~e----~~~-~l  147 (621)
T 2vgl_A           80 VNLLSSNRYTEKQIGYLFISVLVNSNS---ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS-RE----MAE-AF  147 (621)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHSCCCCH---HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC-HH----HHH-HH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHccCCc---HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC-HH----HHH-HH
Confidence            678889999999988888888776543   22211  4677888888888 9999999999999954 33    333 36


Q ss_pred             HHHHHHhh--cCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccc
Q 041643          248 VPIIVSVL--GEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEM  325 (576)
Q Consensus       248 vp~LV~lL--~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~  325 (576)
                      +|.+.++|  .+.++-|+..|+-++..+...+|+.   +...+.++.|..+|..                          
T Consensus       148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d--------------------------  198 (621)
T 2vgl_A          148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLND--------------------------  198 (621)
T ss_dssp             TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTC--------------------------
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCC--------------------------
Confidence            78899999  8889999999999999999766543   2223666777777732                          


Q ss_pred             cccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHH
Q 041643          326 TEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAK  405 (576)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~  405 (576)
                                                    .||.    ++..|..+|..++..+..              .|++   ...
T Consensus       199 ------------------------------~d~~----V~~~a~~~l~~i~~~~~~--------------~~~~---~~~  227 (621)
T 2vgl_A          199 ------------------------------QHLG----VVTAATSLITTLAQKNPE--------------EFKT---SVS  227 (621)
T ss_dssp             ------------------------------SCHH----HHHHHHHHHHHHHHHCHH--------------HHTT---HHH
T ss_pred             ------------------------------CCcc----HHHHHHHHHHHHHHhChH--------------HHHH---HHH
Confidence                                          1333    346677777777643321              1221   122


Q ss_pred             HHHHHHHHHhhhcC------------ChhhHHHHHHHHHHHhcCC-chhhhCcHHHHHHhh------------cCCCH--
Q 041643          406 AVLDQLLRLIHEES------------DAMLQTPAIRSIGCLAKTF-PAKEKRMIGPLVALL------------SNRNV--  458 (576)
Q Consensus       406 ~vV~~Ll~lL~~~~------------~~~lq~~a~~aLgnLa~~~-~~~~~~~I~~LV~LL------------~~~~~--  458 (576)
                      .++..|-+++..++            +|-.|.-.++.++.+++.. +.....++..|-.++            ++.+.  
T Consensus       228 ~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~  307 (621)
T 2vgl_A          228 LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKN  307 (621)
T ss_dssp             HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHH
Confidence            34454545554321            3567877888888777532 221222333333333            11233  


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccC
Q 041643          459 DVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAG  521 (576)
Q Consensus       459 ~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~  521 (576)
                      .|.-||+.++..+...     ++..+     .++..|..+|.++++ +|.-|+.++..++...+
T Consensus       308 aVl~ea~~~i~~l~~~-----~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~  361 (621)
T 2vgl_A          308 AVLFEAISLIIHHDSE-----PNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEF  361 (621)
T ss_dssp             HHHHHHHHHHHHHCCC-----HHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHhcCCc-----HHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC
Confidence            7888899998888521     23222     255678888876666 88888888888865444

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=96.91  E-value=0.076  Score=50.52  Aligned_cols=213  Identities=15%  Similarity=0.205  Sum_probs=139.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHH
Q 041643          163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRF  241 (576)
Q Consensus       163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~  241 (576)
                      ++..++..|...---.+.+|...+..+++.-+   ..+  +..+..|+-+|+.......-.+-|++++-++. .|+-.+ 
T Consensus        33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~---el~--epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~-  106 (253)
T 2db0_A           33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTRE---DLY--EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK-  106 (253)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG---GGH--HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH-
T ss_pred             HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH---HHH--HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH-
Confidence            34445566655444567788888888776432   222  23455566666544326665567799999998 455444 


Q ss_pred             HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhh
Q 041643          242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQM  321 (576)
Q Consensus       242 iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~  321 (576)
                          +.||.+..=.+-|++..+.+.+.+|..++..+|+.--     ++++-+..+|.+.                     
T Consensus       107 ----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltsk---------------------  156 (253)
T 2db0_A          107 ----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSK---------------------  156 (253)
T ss_dssp             ----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCS---------------------
T ss_pred             ----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCC---------------------
Confidence                3578888888999999999999999999988776543     2334555666322                     


Q ss_pred             hccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc
Q 041643          322 KKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS  401 (576)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s  401 (576)
                                                         |.       .+=.-||-.++.=.       +.  .+|-     -.
T Consensus       157 -----------------------------------d~-------~Dkl~aLnFi~alG-------en--~~~y-----v~  180 (253)
T 2db0_A          157 -----------------------------------NR-------EDKLTALNFIEAMG-------EN--SFKY-----VN  180 (253)
T ss_dssp             -----------------------------------SH-------HHHHHHHHHHHTCC-------TT--THHH-----HG
T ss_pred             -----------------------------------Ch-------HHHHHHHHHHHHHh-------cc--Cccc-----cC
Confidence                                               11       11123444443211       11  1221     11


Q ss_pred             hhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcC
Q 041643          402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVS  473 (576)
Q Consensus       402 ~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~  473 (576)
                          -.++.|..+|.+.+ +-+...|+.+|+++|+..+. =..+|-.-+.=++.++..|++..-.+|++++-
T Consensus       181 ----PfLprL~aLL~D~d-eiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          181 ----PFLPRIINLLHDGD-EIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             ----GGHHHHHGGGGCSS-HHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             ----cchHHHHHHHcCcc-hhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence                25788999998765 88999999999999986654 12345555666889999999999999998863

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.011  Score=58.39  Aligned_cols=105  Identities=15%  Similarity=0.125  Sum_probs=73.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHH-HhhcCcccHHHHHh-cCCHHHHHHHH-ccCCChHHHHHHHHHHHHhhcCC---chH-H
Q 041643          168 ISTIQMGQIKSRVDAANELAS-LARDNNRNRKIIVE-EGGILPLLKLL-KEAASPDAQTAAANALFNIATDQ---ETV-R  240 (576)
Q Consensus       168 i~~L~~G~~e~k~~AA~~L~~-La~~~~~~~~~I~~-~GgIppLV~LL-~~g~~~~~q~~AA~AL~nLa~~~---~~~-~  240 (576)
                      -..+++.+-..|..|...|.. +...+++......+ ...+..|.+.| +..+ ..++..|+.+|..|+..-   .-. .
T Consensus        22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n-~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN-IQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHhcccccccHH
Confidence            467899999999999999999 87543322100011 12367788888 4555 889999999999999622   111 1


Q ss_pred             HHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 041643          241 FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAE  275 (576)
Q Consensus       241 ~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~  275 (576)
                      ..  .-.+|.+++.+++....|+..+..+|-.++.
T Consensus       101 y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~  133 (249)
T 2qk1_A          101 YV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICK  133 (249)
T ss_dssp             HH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            11  1158899999988888888888887777774

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.69  E-value=0.089  Score=54.93  Aligned_cols=242  Identities=11%  Similarity=0.035  Sum_probs=143.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 041643          168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG  247 (576)
Q Consensus       168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga  247 (576)
                      +..+++.+.+.|.-.--.+-.++..+++   .|   =++..|.+=+.+++ +-.+-.|.++|++|... +-.+.     .
T Consensus        74 ~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~~-~m~~~-----l  140 (355)
T 3tjz_B           74 TKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKE-DSYRGPAVRALCQITDS-TMLQA-----I  140 (355)
T ss_dssp             HGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCCT-TTHHH-----H
T ss_pred             HHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCCH-HHHHH-----H
Confidence            5678888988888776677777765322   22   25788999999888 99999999999999753 33332     4


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccc
Q 041643          248 VPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTE  327 (576)
Q Consensus       248 vp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~  327 (576)
                      .+.+-+.|.+.++-|+..|+.+...|....|+.-    + +.+..+-+++...                           
T Consensus       141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll~d~---------------------------  188 (355)
T 3tjz_B          141 ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAASSD---------------------------  188 (355)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHTTCS---------------------------
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHhcCC---------------------------
Confidence            5678888999999999999999999987776532    1 4555555555321                           


Q ss_pred             cccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHH
Q 041643          328 KSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAV  407 (576)
Q Consensus       328 ~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~v  407 (576)
                                                   +|-|    ...|..+|..+...+.                         ..
T Consensus       189 -----------------------------n~~V----~~~Al~lL~ei~~~d~-------------------------~a  210 (355)
T 3tjz_B          189 -----------------------------NIMV----QYHALGLLYHVRKNDR-------------------------LA  210 (355)
T ss_dssp             -----------------------------SHHH----HHHHHHHHHHHHTTCH-------------------------HH
T ss_pred             -----------------------------CccH----HHHHHHHHHHHHhhch-------------------------HH
Confidence                                         2222    2456677776654321                         11


Q ss_pred             HHHHHHHhhhcC--ChhhHHHHHHHHHHHhcCC-chhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 041643          408 LDQLLRLIHEES--DAMLQTPAIRSIGCLAKTF-PAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSK  484 (576)
Q Consensus       408 V~~Ll~lL~~~~--~~~lq~~a~~aLgnLa~~~-~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~  484 (576)
                      +..|+.-+..+.  ++-.|.--++.++.+++.. +.....+++.|...|++.+.-|.-||+.+|..+....       .+
T Consensus       211 ~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~-------~~  283 (355)
T 3tjz_B          211 VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS-------AK  283 (355)
T ss_dssp             HHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-------HH
Confidence            233333333221  2444444455554544432 2223467888888999999999999999999885311       11


Q ss_pred             HHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccC
Q 041643          485 AIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAG  521 (576)
Q Consensus       485 ~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~  521 (576)
                      .+  .-++.+|..+|.+++. +|--|+..|..++...|
T Consensus       284 ~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P  319 (355)
T 3tjz_B          284 EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP  319 (355)
T ss_dssp             ------CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred             HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence            11  3467888888888877 88888887776654333

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.65  E-value=0.085  Score=62.00  Aligned_cols=302  Identities=18%  Similarity=0.187  Sum_probs=189.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCch---HH-
Q 041643          165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET---VR-  240 (576)
Q Consensus       165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~---~~-  240 (576)
                      .+++..+...+...+..|+..|.++...+...  ..+..+.+..|.+.+++.. ..  +.|..++..|+.....   .+ 
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~~e~   91 (986)
T 2iw3_A           17 EELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPSVEP   91 (986)
T ss_dssp             HHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTTTHH
T ss_pred             HHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCCccc
Confidence            33456666666566778888898886532111  1222467888888887654 22  9999999999964321   22 


Q ss_pred             HHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHH
Q 041643          241 FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAEL-DSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLV  319 (576)
Q Consensus       241 ~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~-~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v  319 (576)
                      .++  +-+|.+.+.+.+....|+..|..++..+... +++.-     ...+|.|+.-|.+..                  
T Consensus        92 ~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~------------------  146 (986)
T 2iw3_A           92 YIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETN------------------  146 (986)
T ss_dssp             HHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCC------------------
T ss_pred             chH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhcccc------------------
Confidence            222  5678888888777788888877777776643 34332     234677777774321                  


Q ss_pred             hhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhcc
Q 041643          320 QMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKT  399 (576)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~  399 (576)
                         +|                                      +-|..|...+-.|+...++.+         -+     
T Consensus       147 ---kw--------------------------------------~~k~~~l~~~~~~~~~~~~~~---------~~-----  171 (986)
T 2iw3_A          147 ---KW--------------------------------------QEKIAILAAFSAMVDAAKDQV---------AL-----  171 (986)
T ss_dssp             ---CH--------------------------------------HHHHHHHHHHHHHHHHSHHHH---------HH-----
T ss_pred             ---ch--------------------------------------HHHHHHHHHHHHHHHHhHHHH---------HH-----
Confidence               11                                      235677777777765332211         00     


Q ss_pred             CchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhh-hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCC
Q 041643          400 NSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE-KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFN  478 (576)
Q Consensus       400 ~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~-~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~  478 (576)
                         .-..+|+.+-..+.+-. +++...|..++-.+|....+.+ ...||.||+.+.+.+.  .-++...|+.-+    +.
T Consensus       172 ---~~~~~~p~~~~~~~d~k-~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~t----fv  241 (986)
T 2iw3_A          172 ---RMPELIPVLSETMWDTK-KEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE--VPETVHLLGATT----FV  241 (986)
T ss_dssp             ---HHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH--HHHHHHHHTTCC----CC
T ss_pred             ---hccchhcchHhhcccCc-HHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh--hHHHHHHhhcCe----eE
Confidence               01235555555555443 7889999999999988766654 3689999999987754  344555554322    22


Q ss_pred             CHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHhccchhhHh-hhhc-ccCCCCCcHHHHHHH
Q 041643          479 RSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQARALNALE-GAAR-TVLPQHPELRDLFAQ  555 (576)
Q Consensus       479 ~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le-~~~~-~~~~q~~~~~~l~~~  555 (576)
                      ..-..-.+.  =-+|.|.+=|+..+. +++.++..+.||+.=+.|-...  +.++|.|. ++++ .+..=+|+.+++..+
T Consensus       242 ~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~--~~f~~~l~p~~~~~~~~~~~pe~r~~~~~  317 (986)
T 2iw3_A          242 AEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVI--APFLGKLLPGLKSNFATIADPEAREVTLR  317 (986)
T ss_dssp             SCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHH--HHHHTTTHHHHHHHTTTCCSHHHHHHHHH
T ss_pred             eeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHH--hhhhhhhhhHHHHHhhccCCHHHHHHHHH
Confidence            111111110  024666666665555 7778888888998767775543  45677776 7665 455668999999999


Q ss_pred             HHHHHHhhcC
Q 041643          556 AIYHLTLYQA  565 (576)
Q Consensus       556 a~~~l~~y~~  565 (576)
                      |+..|..--.
T Consensus       318 a~~~l~~~~~  327 (986)
T 2iw3_A          318 ALKTLRRVGN  327 (986)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhc
Confidence            9999976533

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.08  E-value=0.037  Score=57.85  Aligned_cols=106  Identities=11%  Similarity=0.059  Sum_probs=83.5

Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchH
Q 041643          160 ILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETV  239 (576)
Q Consensus       160 i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~  239 (576)
                      +...+..+..-++.+++-.|-.|.++|+++..  ++....     ..+++.+.|.+.+ +-++..|+.+..+|-...  .
T Consensus       102 ~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~--p  171 (355)
T 3tjz_B          102 VIIVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDKV-PSVSSSALVSSLHLLKCS--F  171 (355)
T ss_dssp             GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTC--H
T ss_pred             HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCCC-HHHHHHHHHHHHHHhccC--H
Confidence            33556666778899999999999999999864  333222     4577888888888 999999999999997632  2


Q ss_pred             HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC
Q 041643          240 RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELD  277 (576)
Q Consensus       240 ~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~  277 (576)
                      + +++ +.+..+-+++.+.+..++..|..+|..+...+
T Consensus       172 e-~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          172 D-VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             H-HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             H-HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence            2 343 68999999999999999999999999998755

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=95.85  E-value=0.34  Score=47.72  Aligned_cols=136  Identities=23%  Similarity=0.317  Sum_probs=96.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHh
Q 041643          356 ETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLA  435 (576)
Q Consensus       356 ~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa  435 (576)
                      +|+.+    |..+-.+|-.+-...         +..+|+-       ..+.+++.+++++.+.+ +.+-..|+++|+.|-
T Consensus        45 kD~~v----k~raL~~LeellK~~---------~~~l~~~-------~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LL  103 (265)
T 3b2a_A           45 DDETT----RLRAFVALGEILKRA---------DSDLRMM-------VLERHLDVFINALSQEN-EKVTIKALRALGYLV  103 (265)
T ss_dssp             SCHHH----HHHHHHHHHHHHHHS---------CHHHHHH-------HHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHH
T ss_pred             cchHH----HHHHHHHHHHHHHhc---------cccccHH-------HHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHH
Confidence            46654    456667776654321         1234432       34578899999997655 899999999999998


Q ss_pred             cCCchh---hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHH
Q 041643          436 KTFPAK---EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLV  511 (576)
Q Consensus       436 ~~~~~~---~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~  511 (576)
                      ...+-.   -.+++..|++++.+++.-...||+-.++.+- ..+ ..    +.+     +..|.+|+.+.+. +|..|+.
T Consensus       104 e~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklk-v~~-~~----~~V-----~~~l~sLl~Skd~~vK~agl~  172 (265)
T 3b2a_A          104 KDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQ-PLE-DS----KLV-----RTYINELVVSPDLYTKVAGFC  172 (265)
T ss_dssp             TTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCC-BSC-CC----HHH-----HHHHHHHHTCSSHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCC-ccc-ch----HHH-----HHHHHHHHhCCChhHHHHHHH
Confidence            765532   2367899999999999999999999999983 221 11    222     3456789977776 9999999


Q ss_pred             HHHHHhcccCch
Q 041643          512 FLCYLALSAGNS  523 (576)
Q Consensus       512 ~L~~lal~~~~~  523 (576)
                      ++-+++...+|.
T Consensus       173 ~L~eia~~S~D~  184 (265)
T 3b2a_A          173 LFLNMLNSSADS  184 (265)
T ss_dssp             HHHHHGGGCSSC
T ss_pred             HHHHhhcccCCH
Confidence            999998755543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=95.65  E-value=0.076  Score=54.80  Aligned_cols=134  Identities=14%  Similarity=0.075  Sum_probs=105.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH-HhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHH
Q 041643          163 WVWSFISTIQMGQIKSRVDAANELAS-LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRF  241 (576)
Q Consensus       163 ~v~~li~~L~~G~~e~k~~AA~~L~~-La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~  241 (576)
                      -+...+..|++++.+.+.++...|.. +..+ .......++.||+..|++...+++ ...|-.+.+||.+|-.+.+.-.-
T Consensus       119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~v~Gm~g  196 (339)
T 3dad_A          119 RVNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLFVDGMLG  196 (339)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhccccccc
Confidence            35566889999999999999888887 5544 667888889999999999999998 99999999999999988777777


Q ss_pred             HHH-cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh-------cC---CchhHHHhhc
Q 041643          242 IVD-VLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVR-------EN---VTRSLISLLC  298 (576)
Q Consensus       242 iv~-~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~-------~g---~I~~LV~LL~  298 (576)
                      |+. .-.|.-++.++.+....+...|...|..+...++..-..+.+       ..   -...||.+|.
T Consensus       197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~  264 (339)
T 3dad_A          197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILE  264 (339)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred             hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHh
Confidence            775 345778888888877888888999999988766544333322       11   2556777774

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=94.91  E-value=0.51  Score=50.93  Aligned_cols=70  Identities=19%  Similarity=0.218  Sum_probs=55.7

Q ss_pred             CcHHHHHHhhcC----------CCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHH
Q 041643          444 RMIGPLVALLSN----------RNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVF  512 (576)
Q Consensus       444 ~~I~~LV~LL~~----------~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~  512 (576)
                      .++..|+++|++          .++.+..=|+.=|+.|+.    .+|+-+..+-+.||=..+++|+.+.|+ |+.+|+.+
T Consensus       395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr----~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a  470 (480)
T 1ho8_A          395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVE----LLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA  470 (480)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHH----HCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHH----HCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence            468999999973          356677779999999984    246778888888888888899998887 99999988


Q ss_pred             HHHHh
Q 041643          513 LCYLA  517 (576)
Q Consensus       513 L~~la  517 (576)
                      +-.+-
T Consensus       471 vQklm  475 (480)
T 1ho8_A          471 TQAII  475 (480)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76553

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=94.82  E-value=0.27  Score=48.31  Aligned_cols=143  Identities=10%  Similarity=0.163  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc-hh-
Q 041643          364 VRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP-AK-  441 (576)
Q Consensus       364 ~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~-~~-  441 (576)
                      +...|+.+|..|+.+             ++...|..  +-...+++.++..+.+.. +.++..+..++-+++.... .. 
T Consensus        77 v~~~A~~al~~la~~-------------l~~~~f~~--~y~~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~  140 (249)
T 2qk1_A           77 AVALAAQSVELICDK-------------LKTPGFSK--DYVSLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLAS  140 (249)
T ss_dssp             HHHHHHHHHHHHHHH-------------HCTTTSCH--HHHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCT
T ss_pred             HHHHHHHHHHHHHHh-------------cccccccH--HHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHcccccc
Confidence            457899999999853             22012210  234567888888887654 7888888888888876431 10 


Q ss_pred             ---hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHh
Q 041643          442 ---EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLA  517 (576)
Q Consensus       442 ---~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~la  517 (576)
                         -..+++.|+..|+++++.+++++...|+.++...... ++.-..-.....+|.|+++|...+. ++..|..++..+.
T Consensus       141 ~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~-~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          141 SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG-YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI  219 (249)
T ss_dssp             TCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC-SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence               1146888999999999999999999999987432110 0111112224678999999987766 8888888888877


Q ss_pred             cccCch
Q 041643          518 LSAGNS  523 (576)
Q Consensus       518 l~~~~~  523 (576)
                      ..+|+.
T Consensus       220 ~~vG~~  225 (249)
T 2qk1_A          220 KIFGMN  225 (249)
T ss_dssp             HHHCSG
T ss_pred             HHhCHH
Confidence            667763

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=90.37  E-value=12  Score=43.85  Aligned_cols=208  Identities=14%  Similarity=0.125  Sum_probs=130.9

Q ss_pred             CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHh
Q 041643          175 QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSV  254 (576)
Q Consensus       175 ~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~l  254 (576)
                      ....|..|..++..+...-+++  .+  ...+|.|+..|++..-=..|..|...|..|+......-...=-..||.+-+.
T Consensus       108 ~~~v~~aa~~~~~~~~~~~~~~--a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~  183 (986)
T 2iw3_A          108 DKEIQSVASETLISIVNAVNPV--AI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSET  183 (986)
T ss_dssp             SHHHHHHHHHHHHHHHHHSCGG--GH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhh
Confidence            4667766666665555432222  22  3468999999987632688899999999999753222222224578999999


Q ss_pred             hcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCC
Q 041643          255 LGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTN  334 (576)
Q Consensus       255 L~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~  334 (576)
                      +-+-..+|+.+|-.++-.++..- .++|.   +..||.||+-+....                                 
T Consensus       184 ~~d~k~~v~~~~~~~~~~~~~~~-~n~d~---~~~~~~~~~~~~~p~---------------------------------  226 (986)
T 2iw3_A          184 MWDTKKEVKAAATAAMTKATETV-DNKDI---ERFIPSLIQCIADPT---------------------------------  226 (986)
T ss_dssp             TTCSSHHHHHHHHHHHHHHGGGC-CCTTT---GGGHHHHHHHHHCTT---------------------------------
T ss_pred             cccCcHHHHHHHHHHHHHHHhcC-CCcch---hhhHHHHHHHhcChh---------------------------------
Confidence            88888999999999998888632 22221   235677777664321                                 


Q ss_pred             CCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHH
Q 041643          335 NSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRL  414 (576)
Q Consensus       335 ~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~l  414 (576)
                                                      ..-.++..|+.-.    .|++-           ++|+-.-+++.|.+-
T Consensus       227 --------------------------------~~~~~~~~l~~~t----fv~~v-----------~~~~l~~~~p~l~r~  259 (986)
T 2iw3_A          227 --------------------------------EVPETVHLLGATT----FVAEV-----------TPATLSIMVPLLSRG  259 (986)
T ss_dssp             --------------------------------HHHHHHHHHTTCC----CCSCC-----------CHHHHHHHHHHHHHH
T ss_pred             --------------------------------hhHHHHHHhhcCe----eEeee-----------cchhHHHHHHHHHhh
Confidence                                            0123333343210    11111           123333467788888


Q ss_pred             hhhcCChhhHHHHHHHHHHHhcCCchhhh------CcHHHHHHhhc-CCCHHHHHHHHHHHHhh
Q 041643          415 IHEESDAMLQTPAIRSIGCLAKTFPAKEK------RMIGPLVALLS-NRNVDVATEAVIALSKF  471 (576)
Q Consensus       415 L~~~~~~~lq~~a~~aLgnLa~~~~~~~~------~~I~~LV~LL~-~~~~~V~~eAa~AL~nl  471 (576)
                      |...+ ..++..++-.+.|+++-..++..      ..+|.|-+... ..++++++-|..|+.-+
T Consensus       260 l~~~~-~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          260 LNERE-TGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             HTSSS-HHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred             hccCc-chhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            87654 77888999999999997665432      34555555543 56899999888888755

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=88.20  E-value=3.5  Score=47.90  Aligned_cols=100  Identities=12%  Similarity=0.015  Sum_probs=62.7

Q ss_pred             CCHHHHHHHHHHHHHHhhcCcccHHHHH---hcCCH-HHHH----HHHccC--CChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643          174 GQIKSRVDAANELASLARDNNRNRKIIV---EEGGI-LPLL----KLLKEA--ASPDAQTAAANALFNIATDQETVRFIV  243 (576)
Q Consensus       174 G~~e~k~~AA~~L~~La~~~~~~~~~I~---~~GgI-ppLV----~LL~~g--~~~~~q~~AA~AL~nLa~~~~~~~~iv  243 (576)
                      .+-..|+-|...++.++........-+.   ..--+ +.|+    ..|.+.  .++.++..|+|+|+..+..- ...  .
T Consensus       417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~--~  493 (960)
T 1wa5_C          417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA--Q  493 (960)
T ss_dssp             -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH--H
T ss_pred             hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH--H
Confidence            3456777788888888743110000000   00022 2222    234555  13899999999999998742 111  1


Q ss_pred             HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcC
Q 041643          244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAEL  276 (576)
Q Consensus       244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~  276 (576)
                      -...++.+++.|.+.+..|+..|++||.+++..
T Consensus       494 l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          494 LIELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            234678889889888889999999999999863

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=88.06  E-value=1.4  Score=45.52  Aligned_cols=119  Identities=18%  Similarity=0.116  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCC--CC
Q 041643          405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPD--NF  477 (576)
Q Consensus       405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~--n~  477 (576)
                      ++++..|++++.+++ ...|.-+++|+++|--....     .....|.-|+.++.+....|.+-|-.-|..|+...  |+
T Consensus       159 ~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~  237 (339)
T 3dad_A          159 SEGLSCLIRVGAAAD-HNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNA  237 (339)
T ss_dssp             TTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             hccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccc
Confidence            456788999998876 78899999999999643111     12346788888999888999999888888886322  21


Q ss_pred             CCH-HHHHHHHHCCC---cHhHHHhhc---cChh-HHHHHHHHHHHHhcccCchH
Q 041643          478 NRS-EHSKAIIEFDG---VPPLMRLLK---ISDR-AQVHGLVFLCYLALSAGNSK  524 (576)
Q Consensus       478 ~~~-~~~~~Iv~~gg---i~~Lv~LL~---~~d~-vq~~A~~~L~~lal~~~~~~  524 (576)
                      .-. ...+.+....|   ...|+.+|.   ++|. +|.+|+.++..+..+.++.+
T Consensus       238 ~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d  292 (339)
T 3dad_A          238 PLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQD  292 (339)
T ss_dssp             HHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHH
T ss_pred             hHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChh
Confidence            000 01111222334   778889997   5666 89999998877766777655

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=85.55  E-value=18  Score=35.23  Aligned_cols=179  Identities=10%  Similarity=0.044  Sum_probs=103.2

Q ss_pred             HHHHHccCCChHHHHHHHHHHHHhhcCCch---HHHHH-HcC-CHHHHHHhhcCCChhHHHHHHHHHHHHhcCCh-----
Q 041643          209 LLKLLKEAASPDAQTAAANALFNIATDQET---VRFIV-DVL-GVPIIVSVLGEAPVKVQVAVANLVARMAELDS-----  278 (576)
Q Consensus       209 LV~LL~~g~~~~~q~~AA~AL~nLa~~~~~---~~~iv-~~G-avp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~-----  278 (576)
                      |-+-|.+-+ =..+.+|...|..+-.....   ..... .-+ .++.+-+.+.+.+..++..+..+|..++....     
T Consensus        14 l~e~l~sk~-WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKL-WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSS-HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCc-HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            555666666 67777787777766543211   11111 123 35567778888899999999999988874311     


Q ss_pred             HHHHHHHhcCCchhHHHh-hccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCC
Q 041643          279 IAQEEFVRENVTRSLISL-LCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELET  357 (576)
Q Consensus       279 ~~r~~i~~~g~I~~LV~L-L~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d  357 (576)
                      .......-...+|.|+.- |.+                                                        ..
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~--------------------------------------------------------~k  116 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTS--------------------------------------------------------SR  116 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSC--------------------------------------------------------CC
T ss_pred             cchhHHHHHHHHHHHHHHHhcC--------------------------------------------------------cc
Confidence            111111111234444432 211                                                        01


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcC
Q 041643          358 PEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKT  437 (576)
Q Consensus       358 ~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~  437 (576)
                      +.    ++..|..+|-.++.....                      ...+++.++..+.+ .++.++..++..|.++...
T Consensus       117 ~~----~~~~a~~~l~~~~~~~~~----------------------~~~~~e~l~~~l~~-Knpkv~~~~l~~l~~~l~~  169 (278)
T 4ffb_C          117 AT----TKTQSMSCILSLCGLDTS----------------------ITQSVELVIPFFEK-KLPKLIAAAANCVYELMAA  169 (278)
T ss_dssp             HH----HHHHHHHHHHHHHHTSSS----------------------SHHHHHHHGGGGGC-SCHHHHHHHHHHHHHHHHH
T ss_pred             HH----HHHHHHHHHHHHHHhcCc----------------------HHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHH
Confidence            11    334566666555432110                      01345666666665 4589998898888888765


Q ss_pred             Cchh--h-----hCcHHHHHHhhcCCCHHHHHHHHHHHHhh
Q 041643          438 FPAK--E-----KRMIGPLVALLSNRNVDVATEAVIALSKF  471 (576)
Q Consensus       438 ~~~~--~-----~~~I~~LV~LL~~~~~~V~~eAa~AL~nl  471 (576)
                      |...  .     ..+++.+..+|.+++.+|+..|...+..+
T Consensus       170 fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l  210 (278)
T 4ffb_C          170 FGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI  210 (278)
T ss_dssp             HTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             hCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            4321  1     12456788889999999999999888766

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=83.45  E-value=15  Score=42.47  Aligned_cols=91  Identities=11%  Similarity=0.078  Sum_probs=57.3

Q ss_pred             CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHH---c--cCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCH
Q 041643          175 QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLL---K--EAASPDAQTAAANALFNIATD-QETVRFIVDVLGV  248 (576)
Q Consensus       175 ~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL---~--~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gav  248 (576)
                      +-..++-|...|+.++..-....     ...+|.++.+|   .  +.. +.++..|.|+|+.++.. .++...+  ...+
T Consensus       477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~-~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl  548 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLN-VKLLGTALETMGSYCNWLMENPAYI--PPAI  548 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSC-HHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred             cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccC-HHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence            44577778888888875422211     23456666655   2  225 88999999999998863 1221111  1346


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhcC
Q 041643          249 PIIVSVLGEAPVKVQVAVANLVARMAEL  276 (576)
Q Consensus       249 p~LV~lL~s~~~~vq~~Aa~aL~~LA~~  276 (576)
                      +.|+..| +  ..++..|++++.+++..
T Consensus       549 ~~l~~~l-~--~~v~~~A~~al~~l~~~  573 (971)
T 2x1g_F          549 NLLVRGL-N--SSMSAQATLGLKELCRD  573 (971)
T ss_dssp             HHHHHHH-H--SSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHh-C--hHHHHHHHHHHHHHHHH
Confidence            6777777 3  67899999999999953

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=83.05  E-value=36  Score=38.99  Aligned_cols=150  Identities=15%  Similarity=0.211  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhh---cCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHH
Q 041643          219 PDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVL---GEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLIS  295 (576)
Q Consensus       219 ~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL---~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~  295 (576)
                      ...++.|.++|+.++.......    ..-++.++.+|   .++++.++..++|+++.++..-....+ .. ...++.|+.
T Consensus       463 w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~  536 (963)
T 2x19_B          463 WQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLH  536 (963)
T ss_dssp             HHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHH
Confidence            6778899999999997532110    11233333333   335678999999999988742111101 10 122222222


Q ss_pred             hhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHh
Q 041643          296 LLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKL  375 (576)
Q Consensus       296 LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~L  375 (576)
                      .|.                                                          ++.    ++..|+.|+.++
T Consensus       537 ~l~----------------------------------------------------------~~~----V~~~A~~al~~l  554 (963)
T 2x19_B          537 ALG----------------------------------------------------------NPE----LSVSSVSTLKKI  554 (963)
T ss_dssp             HTT----------------------------------------------------------CGG----GHHHHHHHHHHH
T ss_pred             HhC----------------------------------------------------------Cch----HHHHHHHHHHHH
Confidence            221                                                          122    356899999999


Q ss_pred             hcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcC-ChhhHHHHHHHHHHHhcCCc-hhh----hCcHHHH
Q 041643          376 SKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEES-DAMLQTPAIRSIGCLAKTFP-AKE----KRMIGPL  449 (576)
Q Consensus       376 a~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~-~~~lq~~a~~aLgnLa~~~~-~~~----~~~I~~L  449 (576)
                      +.....              .+   .|-...+++.|..++.+.+ +...+.....++|.++...+ +..    ..+++|+
T Consensus       555 ~~~~~~--------------~l---~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l  617 (963)
T 2x19_B          555 CRECKY--------------DL---PPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPY  617 (963)
T ss_dssp             HHHTGG--------------GC---TTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--------------HH---HhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            853211              12   2345577888888887533 35678888999999986554 211    1356666


Q ss_pred             HHhh
Q 041643          450 VALL  453 (576)
Q Consensus       450 V~LL  453 (576)
                      ...+
T Consensus       618 ~~~l  621 (963)
T 2x19_B          618 IQQL  621 (963)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=81.67  E-value=0.78  Score=45.17  Aligned_cols=45  Identities=20%  Similarity=0.299  Sum_probs=27.2

Q ss_pred             HHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 041643          410 QLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALS  469 (576)
Q Consensus       410 ~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~  469 (576)
                      .|..++.+.+ ..+...++..++             .+.|..| ++.+..|++.|+.+|+
T Consensus       198 ~L~~Ll~D~d-~~VR~~aa~~l~-------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          198 DLLELLHDPD-WTVRLAAVEHAS-------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             GGGGGGGCSS-HHHHHHHHHHSC-------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             HHHHHHcCCC-HHHHHHHHHcCC-------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            3455565544 667766655433             3445444 8888888888876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	576
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-14
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	6e-05
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-11
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-06
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-06
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-06
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-05
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	0.004
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-09
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-04
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-04

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.7 bits (179), Expect = 1e-14
 Identities = 61/404 (15%), Positives = 129/404 (31%), Gaps = 30/404 (7%)

Query: 153 PIASNDPILAW-VWSFISTIQMGQIKSRVDAANELASLA-RDNNRNRKIIVEEGGILPLL 210
            I SN   + W V   +  I    ++S++ A      L  R+       I+  G I   +
Sbjct: 3   DIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV 62

Query: 211 KLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANL 269
             L +      Q  +A AL NIA+   E  + +VD   +P  +S+L      +       
Sbjct: 63  SFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWA 122

Query: 270 VARMAELDSIAQEEFVRENVTRSLISLLCM-------------------DIALDLPKPES 310
           +  +A   S  ++  ++      L++LL +                   ++  +      
Sbjct: 123 LGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP 182

Query: 311 AKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAE 370
                  L  + + +      V  +S  +          + +  ++   V   V++  A 
Sbjct: 183 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 242

Query: 371 ALWKLSKGCLLSLWSAESNAELRRSAFKTNS-PAAKAVLDQLLRLIHEESDAMLQTPAIR 429
            L  ++              E  +      +     ++L      I +E+   +      
Sbjct: 243 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 302

Query: 430 SIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEF 489
               + +        ++  LV +LS  +     EA  A++ + S       E    ++  
Sbjct: 303 RQDQIQQVVN---HGLVPFLVGVLSKADFKTQKEAAWAITNYTS---GGTVEQIVYLVHC 356

Query: 490 DGVPPLMRLLKISD-RAQVHGLVFLCYLALSAGNSKALEQARAL 532
             + PLM LL   D +     L  +  +  +A      E+   +
Sbjct: 357 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIM 400

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 16/123 (13%), Positives = 45/123 (36%), Gaps = 3/123 (2%)

Query: 446 IGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRA 505
           +  +V  +++ N++   +A  A  K +S +   +      II    +P  +  L  +D +
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSRE---KQPPIDNIIRAGLIPKFVSFLGKTDCS 71

Query: 506 QVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQA 565
            +          +++G S+  +      A+      +   H  + +    A+ ++    +
Sbjct: 72  PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 131

Query: 566 GSH 568
              
Sbjct: 132 AFR 134

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 1e-11
 Identities = 41/411 (9%), Positives = 105/411 (25%), Gaps = 5/411 (1%)

Query: 166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAA 225
             +  +     K +   A  +      +   ++ + + GGI  L+ LL+   + + Q AA
Sbjct: 6   KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAA 64

Query: 226 ANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFV 285
           A AL N+     T +              L       ++             +   +E +
Sbjct: 65  AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124

Query: 286 RENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHG 345
             +    L   + +  +       +    +                 + ++   +   + 
Sbjct: 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYS 184

Query: 346 QHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAK 405
              +     ++     ++      E    +       L +       +      N+   K
Sbjct: 185 GLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEK 244

Query: 406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAV 465
           +          +  +     P          +        I   + L+     D   EA 
Sbjct: 245 SSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEAC 304

Query: 466 IALSKFVSPDNFNRSEH--SKAIIEFDGVPPLMRLLKIS-DRAQVHGLVFLCYLALSAGN 522
               + ++      S        ++  G+P + RLL+         G   L  ++     
Sbjct: 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL 364

Query: 523 SKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAGSHPHRQT 573
            + +        +     +         D+ + A Y +    A      + 
Sbjct: 365 HRVMGNQ-VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQ 414

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 12/59 (20%), Positives = 24/59 (40%)

Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE 237
              A   + +L     +  K       +  ++ L + +ASP A  AA   L ++ + +E
Sbjct: 394 LSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 45/349 (12%), Positives = 98/349 (28%), Gaps = 12/349 (3%)

Query: 204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVR-FIVDVLGVPIIVSVLGEAPVKV 262
           G  +P       +     Q   A  + +     E+ +  +  + G+  +V +L      V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 263 QVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDL-PKPESAKTTIHSLVQM 321
           Q A A  +  +    +  + E  R+N  R  +SLL      ++  +       + S  ++
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 322 KKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLL 381
           K+E+   +  V  +       G     +   RE+  PE    V       L  LS     
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE----VFFNATGCLRNLSSADAG 176

Query: 382 SLWSAESNAELRRSAFKTNSPAAKAVLDQ--LLRLIHEESDAMLQTPAIRSIGCLAKTFP 439
                  +  +        +  A +  D   +   +    +   +  A          + 
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236

Query: 440 AKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLL 499
           A+            SN++  +              +          +   D +   + L+
Sbjct: 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS----GWLYHSDAIRTYLNLM 292

Query: 500 KISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPE 548
             S +             L+A           L  L+      + +  +
Sbjct: 293 GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ 341

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 37/380 (9%), Positives = 116/380 (30%), Gaps = 55/380 (14%)

Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238
           +  AA  L +L   +  N+     + GI   + LL+   + + Q      L+N+++  E 
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 239 VRFIVDVLGVPIIVSVLGEAP---------------VKVQVAVANLVARMAELDSIAQEE 283
              ++      +   V+                    +V       +  ++  D+  Q  
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 284 FVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGG 343
                +  SL++ +   +A      +S +  +  L  +   +  +        + ++R  
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240

Query: 344 HGQHYNKKDRELETPEVKAKVRIACAEALWKLSKG-----------CLLSLWSAESNAE- 391
           + +  +      ++ ++                KG             L+L         
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300

Query: 392 ----------LRRSAFKTNSPAAKAVLDQ-----LLRLIHEESDAMLQTPAIRSIGCLAK 436
                     L  S    +S  ++ +  +      +  + +  ++ +       +  +++
Sbjct: 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360

Query: 437 TFPAKE---KRMIGPLVALLSNR------NVDVATEAVIALSKFVSPDNFNRSEHSKAII 487
                     ++   +  LL++       + D+ + A   +   ++    ++ + +K   
Sbjct: 361 HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA----SQPQLAKQYF 416

Query: 488 EFDGVPPLMRLLKISDRAQV 507
               +  ++ L + S   + 
Sbjct: 417 SSSMLNNIINLCRSSASPKA 436

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 1e-10
 Identities = 18/121 (14%), Positives = 43/121 (35%)

Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238
              AA  +  L++       I+     +  +++ ++     +     A  L N++  +E 
Sbjct: 34  VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93

Query: 239 VRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC 298
           +  I    G+P +V +LG     V       +  +      A+         + +++LL 
Sbjct: 94  LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 153

Query: 299 M 299
            
Sbjct: 154 K 154

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 4e-10
 Identities = 55/457 (12%), Positives = 125/457 (27%), Gaps = 80/457 (17%)

Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANAL-FNIATDQE 237
               A  L +L+  +      I + GGI  L+K+L           A   L   +   + 
Sbjct: 77  ARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEG 134

Query: 238 TVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297
               +    G+  +V++L +  VK      + +  +A  +  ++   +     ++L++++
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 194

Query: 298 CMDIALDLPKPESAKTTIHSLVQMKKEMTEKST-------------------------NV 332
                  L    S    + S+    K    ++                          N+
Sbjct: 195 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 333 TNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEAL------------WKLSKGCL 380
           ++ +              +    +   V        +                   +  +
Sbjct: 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314

Query: 381 LSLWSAESNAELRRSAFKTNSPAAKA---------------VLDQLLRLIHEESDAMLQT 425
            ++  A    ++   A                          L  +++L+H  S   L  
Sbjct: 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374

Query: 426 PAIRSIGCLAKTFPAKEKRM----IGPLVALLSNRNVDVATEAVIALSKFVSPDNFNR-- 479
             +  I  LA              I  LV LL   + D      +  ++    +      
Sbjct: 375 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 434

Query: 480 ---------------SEHSKAIIEFDGVPPLMRLLKI-SDRAQVHGLVFLCYLALSAGNS 523
                            +   I   + +P  ++LL    +  Q      LC LA     +
Sbjct: 435 IVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 494

Query: 524 KALEQARALNALEGAARTVLPQHPELRDLFAQAIYHL 560
           +A+E   A   L     +   ++  +    A  ++ +
Sbjct: 495 EAIEAEGATAPLTELLHS---RNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 2e-09
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 182 AANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRF 241
               L  LARD + NR +I     I   ++LL  +   + Q  AA  L  +A D+E    
Sbjct: 439 CTGALHILARDVH-NRIVIRGLNTIPLFVQLLY-SPIENIQRVAAGVLCELAQDKEAAEA 496

Query: 242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMA 274
           I        +  +L      V    A ++ RM+
Sbjct: 497 IEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 4e-05
 Identities = 29/155 (18%), Positives = 48/155 (30%), Gaps = 22/155 (14%)

Query: 164 VWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEA------- 216
           +   +  +        + A   L         N   + E+G I  L++LL  A       
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 416

Query: 217 --------------ASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKV 262
                            +       AL  +A D      I  +  +P+ V +L      +
Sbjct: 417 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI 476

Query: 263 QVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297
           Q   A ++  +A+ D  A E    E  T  L  LL
Sbjct: 477 QRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELL 510

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 18/132 (13%), Positives = 46/132 (34%), Gaps = 9/132 (6%)

Query: 442 EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKI 501
             R I  L  LL++ +  V  +A + + +    +          +     V  ++R ++ 
Sbjct: 15  ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH----AIMRSPQMVSAIVRTMQN 70

Query: 502 SDRAQVH--GLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYH 559
           ++  +        L  L+       A+ ++  + AL     +       +       +++
Sbjct: 71  TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS---PVDSVLFYAITTLHN 127

Query: 560 LTLYQAGSHPHR 571
           L L+Q G+    
Sbjct: 128 LLLHQEGAKMAV 139

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 61/355 (17%), Positives = 124/355 (34%), Gaps = 21/355 (5%)

Query: 166 SFISTIQMGQIKSRVDAANELAS-LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTA 224
                +    ++ ++ A  +    L+R++     ++++ G +  L++ ++E      Q  
Sbjct: 80  QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLE 139

Query: 225 AANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEE 283
           AA AL NIA+      + +VD   VP+ + +L    V+V+      +  +A   +  ++ 
Sbjct: 140 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 199

Query: 284 FVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGG 343
            ++ N    +   L +  +       +A  T+ +L + KK   + S         +    
Sbjct: 200 VLQCNAMEPI---LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 256

Query: 344 HGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAE-----------L 392
                   D       +    + A    +       L+ L S ES              +
Sbjct: 257 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 316

Query: 393 RRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGP 448
             +  +T       VL  L  L+    + + +          A          +  +I P
Sbjct: 317 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 376

Query: 449 LVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD 503
           LV LL         EA  A+S   S     R +  + ++    + PL  LL+I+D
Sbjct: 377 LVKLLEVAEYKTKKEACWAISNASS-GGLQRPDIIRYLVSQGCIKPLCDLLEIAD 430

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 45/349 (12%), Positives = 104/349 (29%), Gaps = 26/349 (7%)

Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238
           +++AA  L ++A   +   K++V+   +   ++LL    S + +  A  AL N+A D   
Sbjct: 137 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTD 195

Query: 239 VR-FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297
            R +++    +  I+ +       +       ++ +        +  V      +L  L+
Sbjct: 196 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 255

Query: 298 CMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELET 357
                 +         +  S    +         +                    R +  
Sbjct: 256 YSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 314

Query: 358 PEVKAKVRIACAEALWKLSKGCLLSLWSAES----NAELRRSAFKTNSPAAKAVLDQLLR 413
                 ++         L    LL     E+          +    N+   +AV+D  L 
Sbjct: 315 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 374

Query: 414 ----LIHEESDAMLQTPAIRSIGCLAKTFPAKEKRM--------IGPLVALLSNRNVDVA 461
                + E ++   +  A  +I   +     +   +        I PL  LL   +  + 
Sbjct: 375 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 434

Query: 462 TEAVIALSK-------FVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD 503
              + AL                N +E++  I +  G+  +    +  +
Sbjct: 435 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 483

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238
           R  A   LA L  + + N     +  G+  L+    EA +   +  AA  +   + +   
Sbjct: 34  REGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA 92

Query: 239 VRFIVDVLGV--PIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISL 296
           ++  V  LG    ++  +  +A   V+V     ++ +         +F+R +    L+  
Sbjct: 93  IQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRA 152

Query: 297 LCMD 300
           +   
Sbjct: 153 MQQQ 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	576
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.92
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.88
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.78
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.76
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.75
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.63
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.59
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.49
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.46
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.23
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.9
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.72
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.68
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.63
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.57
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.33
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.3
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.99
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.92
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.88
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	96.52
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.48
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	95.49
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	93.86
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	92.33
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	90.94

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.3e-32  Score=283.97  Aligned_cols=385  Identities=17%  Similarity=0.187  Sum_probs=275.9

Q ss_pred             cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCccc--HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc
Q 041643          157 NDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRN--RKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT  234 (576)
Q Consensus       157 ~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~--~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~  234 (576)
                      .+..++.|++++..|++++.+.+.+|+..|+++.+. +.+  ...+++.|+||+|+++|++.++++.|..|+++|.+|+.
T Consensus         8 ~~~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~   86 (434)
T d1q1sc_           8 QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSR-EKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS   86 (434)
T ss_dssp             TSSSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHS-SSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHT
T ss_pred             cchhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence            344556688999999999999999999999988764 333  56788999999999999765448899999999999988


Q ss_pred             C-CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhh
Q 041643          235 D-QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKT  313 (576)
Q Consensus       235 ~-~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~  313 (576)
                      . ++.+..+++.|++|.|+++|++++.++++.++++|+|++.+++++|..+.+.|++++|+.+|...........     
T Consensus        87 ~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~-----  161 (434)
T d1q1sc_          87 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG-----  161 (434)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH-----
T ss_pred             CChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHH-----
Confidence            5 5678899999999999999999999999999999999999999999999999999999999976532111100     


Q ss_pred             HHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc----------
Q 041643          314 TIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL----------  383 (576)
Q Consensus       314 si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I----------  383 (576)
                      .+....+.-.....    +....+......+.++.+.......|+++    +..++++|.+|+.++...+          
T Consensus       162 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~l~~ll~~~~~~~----~~~a~~~l~~l~~~~~~~~~~~~~~~~~~  233 (434)
T d1q1sc_         162 YLRNLTWTLSNLCR----NKNPAPPLDAVEQILPTLVRLLHHNDPEV----LADSCWAISYLTDGPNERIEMVVKKGVVP  233 (434)
T ss_dssp             HHHHHHHHHHHHTC----CCTTCCCHHHHHHHHHHHHHHTTCSCHHH----HHHHHHHHHHHTSSCHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHhh----cccccchhhhhhhHHHHHHHHHhccccch----hhhHHhhhcccchhhhhhHHHHhhcccch
Confidence            11111111111000    00000000000001111112234456664    4689999999987755441          


Q ss_pred             ----hhcccchHHHHhhhc------cCch-hH-----HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hh
Q 041643          384 ----WSAESNAELRRSAFK------TNSP-AA-----KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KE  442 (576)
Q Consensus       384 ----avae~~~~lrr~a~k------~~s~-a~-----~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~  442 (576)
                          .+-..+.+++..++.      .+.+ ..     .++++.|+.++++.+ ++++..++.+|+||+.....     .+
T Consensus       234 ~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~  312 (434)
T d1q1sc_         234 QLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWTMSNITAGRQDQIQQVVN  312 (434)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             hcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccc-hhhhHHHHHHHhhhccccchhHHHHhh
Confidence                111123334433321      1010 11     234456888887755 88999999999999975543     24


Q ss_pred             hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhc---
Q 041643          443 KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLAL---  518 (576)
Q Consensus       443 ~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal---  518 (576)
                      .+++|.++++|.+.+.+++.+|+|+|+|++...+   .++...+.+.|++++|+++|...|. ++..++.+|.++..   
T Consensus       313 ~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~---~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~  389 (434)
T d1q1sc_         313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT---VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE  389 (434)
T ss_dssp             TTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999987553   5788899999999999999998876 77777777766632   


Q ss_pred             ccCch----HHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHHHHhhcC
Q 041643          519 SAGNS----KALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQA  565 (576)
Q Consensus       519 ~~~~~----~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~y~~  565 (576)
                      +.++.    ..+.+.|+++.|+.      +|+|++++++..|..+|+.||+
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~i~~------L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         390 KLGETEKLSIMIEECGGLDKIEA------LQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             TTTCHHHHHHHHHHTTSHHHHHH------HHTCSSHHHHHHHHHHHHHHCC
T ss_pred             hcCCcHHHHHHHHHcCCHHHHHH------HHcCCCHHHHHHHHHHHHHHhC
Confidence            23332    23556677766654      4789999999999999999996

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.9e-29  Score=269.24  Aligned_cols=364  Identities=17%  Similarity=0.233  Sum_probs=272.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhh-cCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHH
Q 041643          164 VWSFISTIQMGQIKSRVDAANELASLAR-DNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRF  241 (576)
Q Consensus       164 v~~li~~L~~G~~e~k~~AA~~L~~La~-~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~  241 (576)
                      +-.++..+++++.+.+..|...+..+.. .+.+....+++.|+||+|+++|+++.++..|..|+|+|+||+.+ ++.+..
T Consensus        78 l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~  157 (503)
T d1wa5b_          78 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV  157 (503)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3444788899999999999999987653 33445678999999999999998775488999999999999985 456778


Q ss_pred             HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhh
Q 041643          242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQM  321 (576)
Q Consensus       242 iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~  321 (576)
                      +++.|++|.|+.+|.+++.+++..++|+|+||+.+++++|+.+.+.|++++|+.++.+..    .. .     .+...+.
T Consensus       158 ~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~----~~-~-----~~~~~~~  227 (503)
T d1wa5b_         158 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK----PS-L-----IRTATWT  227 (503)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC----HH-H-----HHHHHHH
T ss_pred             HHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCC----HH-H-----HHHHHHH
Confidence            889999999999999999999999999999999999999999999999999999997542    11 0     1111111


Q ss_pred             hccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc
Q 041643          322 KKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS  401 (576)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s  401 (576)
                      -.+.+.    .....+.+....++++.+.......|+++    ...++++|++|+.++.+.          ....+.   
T Consensus       228 l~nl~~----~~~~~~~~~~~~~~l~~l~~~l~~~d~~~----~~~~~~~l~~l~~~~~~~----------~~~~~~---  286 (503)
T d1wa5b_         228 LSNLCR----GKKPQPDWSVVSQALPTLAKLIYSMDTET----LVDACWAISYLSDGPQEA----------IQAVID---  286 (503)
T ss_dssp             HHHHHC----CSSSCCCHHHHGGGHHHHHHHTTCCCHHH----HHHHHHHHHHHHSSCHHH----------HHHHHH---
T ss_pred             HHHHhc----CCccchHHHHHHHHHHHHHHHhccccHHH----HHHHHHHHHhhccCCchh----------hhhhhh---
Confidence            111110    00000000000112333223344567765    478999999999875432          111111   


Q ss_pred             hhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCC
Q 041643          402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDN  476 (576)
Q Consensus       402 ~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n  476 (576)
                         .++++.|+.++.+.+ +.++.+++++++|++.....     .+.++++.|..+|++.+..++++++|+|+|++.+. 
T Consensus       287 ---~~~~~~l~~ll~~~~-~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~-  361 (503)
T d1wa5b_         287 ---VRIPKRLVELLSHES-TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-  361 (503)
T ss_dssp             ---TTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-
T ss_pred             ---hhhhhhhhhcccCCc-hhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc-
Confidence               145788888888765 88999999999999965433     13478999999999999999999999999998642 


Q ss_pred             CCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch----HHHHhccchhhHh---------------
Q 041643          477 FNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS----KALEQARALNALE---------------  536 (576)
Q Consensus       477 ~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~----~~l~~~~~l~~Le---------------  536 (576)
                         ++++..+++.|+++.|+++|..++. ++..|+++|++++.+..+.    ..+.+.|+++.|.               
T Consensus       362 ---~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L  438 (503)
T d1wa5b_         362 ---TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTL  438 (503)
T ss_dssp             ---HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred             ---HHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHH
Confidence               6889999999999999999998887 9999999999998655432    3345666554331               


Q ss_pred             --------------------------------hhhcccCCCCCcHHHHHHHHHHHHHhhcCC
Q 041643          537 --------------------------------GAARTVLPQHPELRDLFAQAIYHLTLYQAG  566 (576)
Q Consensus       537 --------------------------------~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~  566 (576)
                                                      +.++++.+|+|.++++|.+|..+|+.||+.
T Consensus       439 ~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~  500 (503)
T d1wa5b_         439 DALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE  500 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence                                            223356689999999999999999999973

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.3e-25  Score=238.58  Aligned_cols=370  Identities=16%  Similarity=0.151  Sum_probs=266.2

Q ss_pred             cccHHHHHHHHHhhhcc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhh
Q 041643          118 NADFKKVFSLLESSIGD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQM-GQIKSRVDAANELASLAR  191 (576)
Q Consensus       118 ~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~-G~~e~k~~AA~~L~~La~  191 (576)
                      .+++|.|+.+|......     ...+-+++.++....   .+....   ..|..++..|+. ++.+.+..|+.+|.+|+.
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~---~~~~~~---~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~   89 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH---AIMRSP---QMVSAIVRTMQNTNDVETARCTAGTLHNLSH   89 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHH---HHHTCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHH---HHHHhh---hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence            47799999999542221     233334433221000   011111   124445777765 678999999999999987


Q ss_pred             cCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCc-hHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHH
Q 041643          192 DNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE-TVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLV  270 (576)
Q Consensus       192 ~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~-~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL  270 (576)
                      + ++++..|++.|+||+|+++|++++ ++.|++|+++|.||+.+.+ .+..+.+.|+||+|+++|++++.+++..++++|
T Consensus        90 ~-~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L  167 (529)
T d1jdha_          90 H-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL  167 (529)
T ss_dssp             S-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred             C-chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHH
Confidence            4 789999999999999999999999 9999999999999999655 556677999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhh--HHHHHHhhhccccccccccCCCCCCCCCCCCCCCC
Q 041643          271 ARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKT--TIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHY  348 (576)
Q Consensus       271 ~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~--si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  348 (576)
                      .+++..+++.+..+...|++++|+.+|+..+.   . ......  .+.++ ........          .+. ..||++.
T Consensus       168 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~---~-~~~~~~~~~l~~l-s~~~~~~~----------~~~-~~g~~~~  231 (529)
T d1jdha_         168 QILAYGNQESKLIILASGGPQALVNIMRTYTY---E-KLLWTTSRVLKVL-SVCSSNKP----------AIV-EAGGMQA  231 (529)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC---H-HHHHHHHHHHHHH-TTSTTHHH----------HHH-HTTHHHH
T ss_pred             HHHhhhhhHHHHHHHhcccchHHHHHHHhhhh---H-HHHHHHHHHHhhh-hccccccc----------hhh-hhhhhhh
Confidence            99998889999999999999999999976531   1 011000  11111 00000000          000 0023333


Q ss_pred             cccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHH
Q 041643          349 NKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAI  428 (576)
Q Consensus       349 ~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~  428 (576)
                      +.+.....+++    ++..++++|++++......+                   ...++++.|++++.+.+ +.++..|+
T Consensus       232 L~~ll~~~~~~----~~~~a~~~l~~ls~~~~~~~-------------------~~~~~i~~Lv~ll~~~~-~~~~~~a~  287 (529)
T d1jdha_         232 LGLHLTDPSQR----LVQNCLWTLRNLSDAATKQE-------------------GMEGLLGTLVQLLGSDD-INVVTCAA  287 (529)
T ss_dssp             HHTTTTSSCHH----HHHHHHHHHHHHHTTCTTCS-------------------CCHHHHHHHHHHTTCSC-HHHHHHHH
T ss_pred             HHHHhcccchh----hhhhhhhHHHhccccccchh-------------------hhhhcchhhhhhccccc-HHHHHHHH
Confidence            22222334554    35689999999986543221                   12367899999998765 88999999


Q ss_pred             HHHHHHhcCCch-----hhhCcHHHHHHhh--cCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhcc
Q 041643          429 RSIGCLAKTFPA-----KEKRMIGPLVALL--SNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKI  501 (576)
Q Consensus       429 ~aLgnLa~~~~~-----~~~~~I~~LV~LL--~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~  501 (576)
                      ++|+||+...+.     .+.+++++|+.+|  .+..+++++.|+++|.+++.+.. .....+..+...||++.|+.+|+.
T Consensus       288 ~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~i~~~~~l~~L~~ll~~  366 (529)
T d1jdha_         288 GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ-EAEMAQNAVRLHYGLPVVVKLLHP  366 (529)
T ss_dssp             HHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST-THHHHHHHHHHTTCHHHHHHTTST
T ss_pred             HHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhh-cchhhhhhHHhcccchhHHHHHhc
Confidence            999999865433     2457899999988  45678899999999999986432 223456778899999999999987


Q ss_pred             Chh--HHHHHHHHHHHHhcccCchHHHHhccchhhHh
Q 041643          502 SDR--AQVHGLVFLCYLALSAGNSKALEQARALNALE  536 (576)
Q Consensus       502 ~d~--vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le  536 (576)
                      ++.  ++..++.++++++.+..+...+.+.|+++.|.
T Consensus       367 ~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~  403 (529)
T d1jdha_         367 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV  403 (529)
T ss_dssp             TCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHH
T ss_pred             cchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHH
Confidence            653  67778899999999888889999999998875

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-25  Score=242.03  Aligned_cols=332  Identities=14%  Similarity=0.135  Sum_probs=249.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhc-CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHH
Q 041643          164 VWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEE-GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFI  242 (576)
Q Consensus       164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~-GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~i  242 (576)
                      |-.++.+|+.++.+.|..|+..|..|+++ +..+..++.. |.||+|+++|+..++++.++.|+++|.+|+.+++++..|
T Consensus        19 ip~L~~lL~~~~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i   97 (529)
T d1jdha_          19 IPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI   97 (529)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHH
Confidence            34458999999999999999999999986 6677777665 569999999987644899999999999999999999999


Q ss_pred             HHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhh
Q 041643          243 VDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK  322 (576)
Q Consensus       243 v~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~  322 (576)
                      ++.|+||+|+.+|++++++++..|+++|++++.+++..|..+.+.|+||+|+.+|.++...  . .......+..+....
T Consensus        98 ~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~--~-~~~a~~~L~~l~~~~  174 (529)
T d1jdha_          98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK--F-LAITTDCLQILAYGN  174 (529)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHH--H-HHHHHHHHHHHHTTC
T ss_pred             HHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChH--H-HHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999889999999999999999999865310  0 011111222222111


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCcccc-cccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc
Q 041643          323 KEMTEKSTNVTNNSDGSSRGGHGQHYNKKD-RELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS  401 (576)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s  401 (576)
                      .......          . ..||++.+... +..+++.    ++..+++++++|+....           .++..+    
T Consensus       175 ~~~~~~~----------~-~~~~~~~L~~ll~~~~~~~----~~~~~~~~l~~ls~~~~-----------~~~~~~----  224 (529)
T d1jdha_         175 QESKLII----------L-ASGGPQALVNIMRTYTYEK----LLWTTSRVLKVLSVCSS-----------NKPAIV----  224 (529)
T ss_dssp             HHHHHHH----------H-HTTHHHHHHHHHHHCCCHH----HHHHHHHHHHHHTTSTT-----------HHHHHH----
T ss_pred             hHHHHHH----------H-hcccchHHHHHHHhhhhHH----HHHHHHHHHhhhhcccc-----------ccchhh----
Confidence            1100000          0 01233332122 2233333    45789999999986432           222211    


Q ss_pred             hhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCC
Q 041643          402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK--EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNR  479 (576)
Q Consensus       402 ~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~--~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~  479 (576)
                        ..++++.|++++.+.+ +.++..++.++.|++......  ..++|+.|+++|++.+.++++.|+++|+++++++    
T Consensus       225 --~~g~~~~L~~ll~~~~-~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~----  297 (529)
T d1jdha_         225 --EAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN----  297 (529)
T ss_dssp             --HTTHHHHHHTTTTSSC-HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC----
T ss_pred             --hhhhhhhHHHHhcccc-hhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccch----
Confidence              1256889999998765 889999999999998654432  2468999999999999999999999999998753    


Q ss_pred             HHHHHHHHHCCCcHhHHHhhcc-C-hh-HHHHHHHHHHHHhcccCchH----HHHhccchhhHh
Q 041643          480 SEHSKAIIEFDGVPPLMRLLKI-S-DR-AQVHGLVFLCYLALSAGNSK----ALEQARALNALE  536 (576)
Q Consensus       480 ~~~~~~Iv~~ggi~~Lv~LL~~-~-d~-vq~~A~~~L~~lal~~~~~~----~l~~~~~l~~Le  536 (576)
                      .+++..+.+.||++.|++++.. + .+ +|..|+.+|.+++.+..+.+    .+.+.++++.|.
T Consensus       298 ~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~  361 (529)
T d1jdha_         298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV  361 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHH
Confidence            6888999999999999998853 2 23 78889999999986665543    355678888876

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.2e-23  Score=223.11  Aligned_cols=347  Identities=17%  Similarity=0.242  Sum_probs=265.3

Q ss_pred             hccccccHHHHHHHHHhh-hc----chHHHh-hhcccCc-------cccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHH
Q 041643          114 SITTNADFKKVFSLLESS-IG----DMRWLL-TIFDSDE-------VNLSLPPIASNDPILAWVWSFISTIQMGQIKSRV  180 (576)
Q Consensus       114 ~i~~~~~l~~l~~~L~~~-~~----~~~~ll-~~s~~~~-------~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~  180 (576)
                      .++.+|.++.|+..|... ..    ...|.+ +++..+.       ..+++|.             ++..|++++.+.+.
T Consensus       114 ~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~-------------l~~lL~s~~~~i~~  180 (503)
T d1wa5b_         114 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPL-------------FIQLLYTGSVEVKE  180 (503)
T ss_dssp             HHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH-------------HHHHHHHCCHHHHH
T ss_pred             HHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHH-------------HHHHhcCCChhHHH
Confidence            456789999999998532 11    134443 4443221       1112222             27889999999999


Q ss_pred             HHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCc-hHHHHHHcCCHHHHHHhhcCCC
Q 041643          181 DAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE-TVRFIVDVLGVPIIVSVLGEAP  259 (576)
Q Consensus       181 ~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~-~~~~iv~~Gavp~LV~lL~s~~  259 (576)
                      .|+++|++++.+++.++..+.+.|++++|+.++.+.+ +..+.+++|+|.||+.+.+ ........|++|.|++++.+.+
T Consensus       181 ~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~-~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d  259 (503)
T d1wa5b_         181 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK-PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD  259 (503)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC-HHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCC-HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhcccc
Confidence            9999999999988889999999999999999999988 9999999999999998643 3445566899999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCC
Q 041643          260 VKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGS  339 (576)
Q Consensus       260 ~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~  339 (576)
                      .+++..++|+|.+++..+++....+.+.|+++.|+.++.++                                       
T Consensus       260 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~---------------------------------------  300 (503)
T d1wa5b_         260 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE---------------------------------------  300 (503)
T ss_dssp             HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS---------------------------------------
T ss_pred             HHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCC---------------------------------------
Confidence            99999999999999988888888999999999999999643                                       


Q ss_pred             CCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcC
Q 041643          340 SRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEES  419 (576)
Q Consensus       340 ~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~  419 (576)
                                       ++.    ++..|..+|++++.++...+          ...+.      .++++.|..++++.+
T Consensus       301 -----------------~~~----v~~~al~~l~nl~~~~~~~~----------~~~~~------~~~l~~l~~ll~~~~  343 (503)
T d1wa5b_         301 -----------------STL----VQTPALRAVGNIVTGNDLQT----------QVVIN------AGVLPALRLLLSSPK  343 (503)
T ss_dssp             -----------------CHH----HHHHHHHHHHHHTTSCHHHH----------HHHHH------TTHHHHHHHHTTCSC
T ss_pred             -----------------chh----hhhhHHHHHHHHHHHHHHHH----------Hhhhc------cchHHHHHHHhcCCC
Confidence                             122    34678999999997754321          11111      246788888888765


Q ss_pred             ChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHh
Q 041643          420 DAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPP  494 (576)
Q Consensus       420 ~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~  494 (576)
                       +.++..++.+|+|++...+.     .+.+++++++.+|.+.+.+++++|+|+|+|++..+. ...+..+.+++.|++++
T Consensus       344 -~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~l~~~~~l~~  421 (503)
T d1wa5b_         344 -ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL-QRPDIIRYLVSQGCIKP  421 (503)
T ss_dssp             -HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT-TCTHHHHHHHHTTCHHH
T ss_pred             -HHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhccc-ccHHHHHHHHHCCcHHH
Confidence             88999999999999875543     246899999999999999999999999999986442 13577889999999999


Q ss_pred             HHHhhccChh-HHHHHHHHHHHHhcc------------cCchHHHHhccchhhHhhhhcccCCCCCcHHHHHHH
Q 041643          495 LMRLLKISDR-AQVHGLVFLCYLALS------------AGNSKALEQARALNALEGAARTVLPQHPELRDLFAQ  555 (576)
Q Consensus       495 Lv~LL~~~d~-vq~~A~~~L~~lal~------------~~~~~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~  555 (576)
                      |+++|...|. +...++.+|.++...            .+....+.+.|++..|+.+...   ++.++.+...+
T Consensus       422 l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~---~~~~i~~~A~~  492 (503)
T d1wa5b_         422 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN---ENDKIYEKAYK  492 (503)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGC---SCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHH
Confidence            9999998876 666677777776310            1123467889999999854322   34555444443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.8e-23  Score=210.79  Aligned_cols=319  Identities=17%  Similarity=0.153  Sum_probs=221.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHc
Q 041643          167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDV  245 (576)
Q Consensus       167 li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~  245 (576)
                      +|..|++++++.|..||.+|.+|+..++++++.|.+.||||+|+++|++++ ++.|+.|+++|.||+. +++++..++++
T Consensus         7 lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~~i~~~   85 (457)
T d1xm9a1           7 AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLETRRQ   85 (457)
T ss_dssp             HHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence            489999999999999999999999888999999999999999999999988 9999999999999996 67888999999


Q ss_pred             CCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643          246 LGVPIIVSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE  324 (576)
Q Consensus       246 Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~  324 (576)
                      |+|+.|++++.+ .+.+++..++++|.+++..+ ..+..+...| +++++..+.......... ..              
T Consensus        86 g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~-~~~l~~~~~~~~~~~~~~-~~--------------  148 (457)
T d1xm9a1          86 NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADA-LPVLADRVIIPFSGWCDG-NS--------------  148 (457)
T ss_dssp             TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHH-HHHHHHHTTHHHHTCC-------------------
T ss_pred             CChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh-hhHHHHHhcc-cHHHHHHHHhhhhhhhcc-hh--------------
Confidence            999999999965 56889999999999999764 4555555544 566666553211000000 00              


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCccc---------c------------
Q 041643          325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLS---------L------------  383 (576)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~---------I------------  383 (576)
                                             .  ...+..++.+    +..++++|++++.++...         |            
T Consensus       149 -----------------------~--~~~~~~~~~v----~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~  199 (457)
T d1xm9a1         149 -----------------------N--MSREVVDPEV----FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVA  199 (457)
T ss_dssp             ------------------------------CCCHHH----HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred             -----------------------h--hhcccccHHH----HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchh
Confidence                                   0  0000111111    122333333322211100         0            


Q ss_pred             -------------------------------------------------hhcccchHHHHhh----h--------ccCch
Q 041643          384 -------------------------------------------------WSAESNAELRRSA----F--------KTNSP  402 (576)
Q Consensus       384 -------------------------------------------------avae~~~~lrr~a----~--------k~~s~  402 (576)
                                                                       .............    +        .....
T Consensus       200 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (457)
T d1xm9a1         200 ASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL  279 (457)
T ss_dssp             HTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG
T ss_pred             hhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHH
Confidence                                                             0000000000000    0        00011


Q ss_pred             hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch----------hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          403 AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA----------KEKRMIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       403 a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~----------~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                      ...++++.|+.++...+++..+..+..++.+++.....          .+.+++|.|+++|++.++++++.|+++|++++
T Consensus       280 ~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La  359 (457)
T d1xm9a1         280 YHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS  359 (457)
T ss_dssp             GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHh
Confidence            12456788888887776688899999999999864431          13478999999999999999999999999998


Q ss_pred             CCCCCCCHHHHHHHHHCCCcHhHHHhhccC------hh-HHHHHHHHHHHHhccc-CchHHHHhccchhhHhhh
Q 041643          473 SPDNFNRSEHSKAIIEFDGVPPLMRLLKIS------DR-AQVHGLVFLCYLALSA-GNSKALEQARALNALEGA  538 (576)
Q Consensus       473 ~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~------d~-vq~~A~~~L~~lal~~-~~~~~l~~~~~l~~Le~~  538 (576)
                      .+     ++.++.|.+ +++++|+.+|...      +. ++..++.+|++++.+. .+.+.+.++|+++.|..+
T Consensus       360 ~~-----~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l  427 (457)
T d1xm9a1         360 RH-----PLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINL  427 (457)
T ss_dssp             TS-----GGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHH
T ss_pred             hC-----hhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHH
Confidence            53     355666664 7899999999643      12 6778999999997544 456788999999998843

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3e-21  Score=200.32  Aligned_cols=315  Identities=16%  Similarity=0.144  Sum_probs=220.2

Q ss_pred             cCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCch--HHHHHHcCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChH
Q 041643          203 EGGILPLLKLLKEAASPDAQTAAANALFNIATDQET--VRFIVDVLGVPIIVSVLGE-APVKVQVAVANLVARMAELDSI  279 (576)
Q Consensus       203 ~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~--~~~iv~~Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~  279 (576)
                      .++|.+||+.|++++ ++.|..|+.+|.++.+...+  ...+++.|++|.|+++|++ .+.++|..|+|+|.++|..+++
T Consensus        12 ~~~i~~lv~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~   90 (434)
T d1q1sc_          12 NWSVEDIVKGINSNN-LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE   90 (434)
T ss_dssp             SCCHHHHHHHHTSSC-HHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHH
T ss_pred             hhhHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChh
Confidence            478999999999999 99999999999999765444  5789999999999999965 4578999999999999998889


Q ss_pred             HHHHHHhcCCchhHHHhhccccccCCCc-chhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccC-C
Q 041643          280 AQEEFVRENVTRSLISLLCMDIALDLPK-PESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELE-T  357 (576)
Q Consensus       280 ~r~~i~~~g~I~~LV~LL~~~t~~~~~~-~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~-d  357 (576)
                      .+..+.+.|++|+|+.+|.++.    .. .......+.++. .........         +. ..++++.+....... +
T Consensus        91 ~~~~i~~~~~i~~l~~~L~~~~----~~~~~~a~~~L~nl~-~~~~~~~~~---------i~-~~~~~~~l~~~l~~~~~  155 (434)
T d1q1sc_          91 QTKAVVDGGAIPAFISLLASPH----AHISEQAVWALGNIA-GDGSAFRDL---------VI-KHGAIDPLLALLAVPDL  155 (434)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSC----HHHHHHHHHHHHHHH-TTCHHHHHH---------HH-HTTCHHHHHHHTCSSCG
T ss_pred             hhhHhhhccchhhhhhccccCC----HHHHHHHHHHHHHHh-ccchHHHHH---------HH-HhhhhhHHHHHHHhccc
Confidence            9999999999999999998652    11 000001121111 000000000         00 001222211111111 1


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCccc---------c----hhc-ccchHHHHhhhc------cCch------hHHHHHHHH
Q 041643          358 PEVKAKVRIACAEALWKLSKGCLLS---------L----WSA-ESNAELRRSAFK------TNSP------AAKAVLDQL  411 (576)
Q Consensus       358 ~~vk~~~k~~Aa~ALw~La~g~~~~---------I----ava-e~~~~lrr~a~k------~~s~------a~~~vV~~L  411 (576)
                      ..........+++++.+++.+....         +    ... ..+++++..++.      ...+      ...++++.|
T Consensus       156 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L  235 (434)
T d1q1sc_         156 STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL  235 (434)
T ss_dssp             GGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhc
Confidence            1111223457888899988765433         0    111 223344443321      0011      112467889


Q ss_pred             HHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 041643          412 LRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAI  486 (576)
Q Consensus       412 l~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~I  486 (576)
                      +.++.+.+ +.++.+++++|+|++.....     .+.+++++|+.+|++.+.++++.|+|+|++++..    +.++...+
T Consensus       236 v~ll~~~~-~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~i  310 (434)
T d1q1sc_         236 VKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG----RQDQIQQV  310 (434)
T ss_dssp             HHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTS----CHHHHHHH
T ss_pred             ccccccch-hhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccc----cchhHHHH
Confidence            99888765 88999999999999975433     2457899999999999999999999999999853    26888999


Q ss_pred             HHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCc--hHHHHhccchhhHhhh
Q 041643          487 IEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGN--SKALEQARALNALEGA  538 (576)
Q Consensus       487 v~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~--~~~l~~~~~l~~Le~~  538 (576)
                      .+.|+++.|++++.+++. ++..|++++++++.+..+  ...+.+.|+++.|..+
T Consensus       311 ~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~l  365 (434)
T d1q1sc_         311 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL  365 (434)
T ss_dssp             HHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHH
Confidence            999999999999998877 899999999999765443  3568899999998743

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.1e-21  Score=197.72  Aligned_cols=368  Identities=13%  Similarity=0.106  Sum_probs=238.4

Q ss_pred             cHHHHHHHHHhhhcch-----HHHhhhcccCc-------cccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041643          120 DFKKVFSLLESSIGDM-----RWLLTIFDSDE-------VNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELA  187 (576)
Q Consensus       120 ~l~~l~~~L~~~~~~~-----~~ll~~s~~~~-------~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~  187 (576)
                      .+|.|+.+|.++..++     ..|-++...+.       ..+++|++             +.+|++++.+.|..|+.+|.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~L-------------v~lL~~~~~~v~~~a~~aL~   69 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKL-------------VDLLRSPNQNVQQAAAGALR   69 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHH-------------HHHTTSSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHH-------------HHHHCCCCHHHHHHHHHHHH
Confidence            5899999998765553     34444443221       13344554             78999999999999999999


Q ss_pred             HHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhh------------
Q 041643          188 SLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVL------------  255 (576)
Q Consensus       188 ~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL------------  255 (576)
                      +|+..+++++..|.+.|||++|++++.+..++..+..|+++|.+|+.+...+......|..+.+..++            
T Consensus        70 ~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  149 (457)
T d1xm9a1          70 NLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSN  149 (457)
T ss_dssp             HHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC-----
T ss_pred             HHHcCCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhh
Confidence            99988889999999999999999999876548999999999999999888877777655444443332            


Q ss_pred             ---cCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCc-chhhhh--HHHH------------
Q 041643          256 ---GEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPK-PESAKT--TIHS------------  317 (576)
Q Consensus       256 ---~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~-~i~~~~--si~~------------  317 (576)
                         ...+..++..++++|.+++.+++..+..+...|+|+.|+.++++........ ......  ..+.            
T Consensus       150 ~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  229 (457)
T d1xm9a1         150 MSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTR  229 (457)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCH
T ss_pred             hhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence               2346789999999999999765544444555688999999997542111110 000000  0000            


Q ss_pred             ---HHhhhcccccc-cccc---C----C-------CCCCCCCCC---------CCCCCcc-cccccCCHHHHHHHHHHHH
Q 041643          318 ---LVQMKKEMTEK-STNV---T----N-------NSDGSSRGG---------HGQHYNK-KDRELETPEVKAKVRIACA  369 (576)
Q Consensus       318 ---~v~~~~~~~~~-~~~~---~----~-------~~~~~~~~~---------~g~~~~~-~~~e~~d~~vk~~~k~~Aa  369 (576)
                         ........... ...+   .    .       .........         ++++.+. ......+++    .+..+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~----~~~~~~  305 (457)
T d1xm9a1         230 YRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA----TLEACA  305 (457)
T ss_dssp             HHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH----HHHHHH
T ss_pred             HHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchH----HHHHHH
Confidence               00000000000 0000   0    0       000000000         0000000 001122333    346788


Q ss_pred             HHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh---hhCcH
Q 041643          370 EALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK---EKRMI  446 (576)
Q Consensus       370 ~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~---~~~~I  446 (576)
                      +++.+++.++....      ...++..+.     ..++++.|+.++.+++ +.++..++++++||+++....   ..++|
T Consensus       306 ~~l~~l~~~~~~~~------~~~~~~~~~-----~~~~l~~L~~~l~~~~-~~v~~~a~~~l~~La~~~~~~~~i~~~~i  373 (457)
T d1xm9a1         306 GALQNLTASKGLMS------SGMSQLIGL-----KEKGLPQIARLLQSGN-SDVVRSGASLLSNMSRHPLLHRVMGNQVF  373 (457)
T ss_dssp             HHHHHHTTCSSSHH------HHHHHHHHT-----TSCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSGGGHHHHHHHTH
T ss_pred             HHHHHHhhccccch------HHHHHHHHH-----HcCChHHHHhhhcCcc-HHHHHHHHHHHHHHhhChhHHHHHHHhhH
Confidence            88998886643321      112221111     1245788999998765 889999999999999876542   23689


Q ss_pred             HHHHHhhcC------CCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccCh-h-HHHHHHHHHHHHhc
Q 041643          447 GPLVALLSN------RNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD-R-AQVHGLVFLCYLAL  518 (576)
Q Consensus       447 ~~LV~LL~~------~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d-~-vq~~A~~~L~~lal  518 (576)
                      ++|+.+|..      .+.+++..|+.+|.|++...    +++++.+.+.||+++|++++++.+ + ++..|+.+|++|..
T Consensus       374 ~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~----~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~  449 (457)
T d1xm9a1         374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ----PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC----THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCC----HHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence            999999953      34679999999999998643    588999999999999999998754 4 78889999999964


Q ss_pred             cc
Q 041643          519 SA  520 (576)
Q Consensus       519 ~~  520 (576)
                      |.
T Consensus       450 ~~  451 (457)
T d1xm9a1         450 SK  451 (457)
T ss_dssp             ST
T ss_pred             CH
Confidence            43

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.6e-18  Score=171.40  Aligned_cols=233  Identities=17%  Similarity=0.168  Sum_probs=180.9

Q ss_pred             HccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHH-hhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCch
Q 041643          213 LKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVS-VLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTR  291 (576)
Q Consensus       213 L~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~-lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~  291 (576)
                      ..+.+ .+.+..|..+|.+|+.+.++++.++..|++++++. +|++++.+++..|+++|++++.+++.++..+.+.|+||
T Consensus        26 ~~~~~-~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~  104 (264)
T d1xqra1          26 EQAAD-QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALR  104 (264)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             hcCCC-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            33445 77889999999999999999999999999999986 67889999999999999999999999999999999999


Q ss_pred             hHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 041643          292 SLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEA  371 (576)
Q Consensus       292 ~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~A  371 (576)
                      +|+.+|.+++                                                       +++    ++..|++|
T Consensus       105 ~Lv~lL~~~~-------------------------------------------------------~~~----v~~~a~~a  125 (264)
T d1xqra1         105 KLLRLLDRDA-------------------------------------------------------CDT----VRVKALFA  125 (264)
T ss_dssp             HHHHHHHHCS-------------------------------------------------------CHH----HHHHHHHH
T ss_pred             HHHHHhhcCC-------------------------------------------------------CHH----HHHHHHHH
Confidence            9999996431                                                       233    35789999


Q ss_pred             HHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHH
Q 041643          372 LWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVA  451 (576)
Q Consensus       372 Lw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~  451 (576)
                      |++|+.++..+          +               ..+                             .+.++++.|++
T Consensus       126 L~~l~~~~~~~----------~---------------~~~-----------------------------~~~~gi~~L~~  151 (264)
T d1xqra1         126 ISCLVREQEAG----------L---------------LQF-----------------------------LRLDGFSVLMR  151 (264)
T ss_dssp             HHHHHTTCHHH----------H---------------HHH-----------------------------HHTTHHHHHHH
T ss_pred             HHHHhccchhh----------H---------------HHH-----------------------------HHhhhhhHHHH
Confidence            99998764210          0               000                             13467999999


Q ss_pred             hhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHhcc
Q 041643          452 LLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQAR  530 (576)
Q Consensus       452 LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~  530 (576)
                      +|++.+.+++..++++|.+++...    ++++..+++.|+++.|+.||++++. +|..|+++|++++.+.++........
T Consensus       152 lL~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         152 AMQQQVQKLKVKSAFLLQNLLVGH----PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             HHhcCchHHHHHHHHHHHHHHhcc----HHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            999999999999999999998532    5789999999999999999998877 99999999999987666553333332


Q ss_pred             chh---hHhhhhcccCCCCCcHHHHHHHHHHHHHhhc
Q 041643          531 ALN---ALEGAARTVLPQHPELRDLFAQAIYHLTLYQ  564 (576)
Q Consensus       531 ~l~---~Le~~~~~~~~q~~~~~~l~~~a~~~l~~y~  564 (576)
                      .+.   .|.-. ....-+..+..+....+..+++..|
T Consensus       228 ~l~~~~~L~~~-~~~~~~~~~~~e~~~~~~~ll~~~~  263 (264)
T d1xqra1         228 ELGLEELLRHR-CQLLQQHEEYQEELEFCEKLLQTCF  263 (264)
T ss_dssp             GGCHHHHHHHH-HHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred             hhhHHHHHHHH-HHhccchHHHHHHHHHHHHHHHHhc
Confidence            222   22211 1112244566777777777777655

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.5e-17  Score=164.24  Aligned_cols=129  Identities=16%  Similarity=0.135  Sum_probs=114.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHH-HHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcC
Q 041643          169 STIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLK-LLKEAASPDAQTAAANALFNIATD-QETVRFIVDVL  246 (576)
Q Consensus       169 ~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~-LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~G  246 (576)
                      ...++.+.+.|..|...|.+|+.+ .+|+..+...||+++|+. +|.+++ ++.|..|+++|++++.+ +..+..+++.|
T Consensus        24 ~~~~~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~-~~vr~~A~~~L~~l~~~~~~~~~~~~~~~  101 (264)
T d1xqra1          24 EAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGA-AGLRWRAAQLIGTCSQNVAAIQEQVLGLG  101 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            344566778899999999999964 778999999999999996 677777 99999999999999985 56778899999


Q ss_pred             CHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhcc
Q 041643          247 GVPIIVSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCM  299 (576)
Q Consensus       247 avp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~  299 (576)
                      ++|.|+++|.+ .++.++..++++|.+++.+++..+..+...|+++.|+.+|.+
T Consensus       102 ~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~  155 (264)
T d1xqra1         102 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ  155 (264)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhc
Confidence            99999999964 568899999999999999999999999999999999999964

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=5.6e-07  Score=85.56  Aligned_cols=248  Identities=12%  Similarity=0.065  Sum_probs=155.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHc
Q 041643          166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDV  245 (576)
Q Consensus       166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~  245 (576)
                      .++..|+.+++..|..|+..|..+..           ..++|.|+++|++.+ +.++..|+++|..+.........+   
T Consensus        23 ~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~~~~~---   87 (276)
T d1oyza_          23 ELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKCEDNV---   87 (276)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTTHHHH---
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccccccch---
Confidence            35789999999999999999986631           235899999999988 999999999999997654443332   


Q ss_pred             CCHHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643          246 LGVPI-IVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE  324 (576)
Q Consensus       246 Gavp~-LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~  324 (576)
                        ++. +..++++.+..++..++.+|+++....+....     ..++.+...+....    .  .+.......+......
T Consensus        88 --~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~----~--~vr~~a~~~l~~~~~~  154 (276)
T d1oyza_          88 --FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKS----T--NVRRATAFAISVINDK  154 (276)
T ss_dssp             --HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSC----H--HHHHHHHHHHHTC---
T ss_pred             --HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcc----h--HHHHHHHHHHhhcchH
Confidence              233 34456788899999999999999876543322     23455555554321    1  0000011111100000


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhH
Q 041643          325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAA  404 (576)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~  404 (576)
                      .                   .++.+.......++.+    +..+..++..+..+.                         
T Consensus       155 ~-------------------~~~~l~~l~~~~~~~~----~~~~~~~~~~~~~~~-------------------------  186 (276)
T d1oyza_         155 A-------------------TIPLLINLLKDPNGDV----RNWAAFAININKYDN-------------------------  186 (276)
T ss_dssp             C-------------------CHHHHHHHHTCSSHHH----HHHHHHHHHHHTCCC-------------------------
T ss_pred             H-------------------HHHHHHHhcccccchh----hhhHHHHHHhhhccc-------------------------
Confidence            0                   0011001112223332    234555555443332                         


Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 041643          405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSK  484 (576)
Q Consensus       405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~  484 (576)
                      ...++.++..+.+.+ ..+...++.+++.+.      ...++|+|++.|.+.  +|+..|+++|+.+..           
T Consensus       187 ~~~~~~~~~~~~~~~-~~~~~~~~~al~~~~------~~~~~~~L~~~l~d~--~vr~~a~~aL~~ig~-----------  246 (276)
T d1oyza_         187 SDIRDCFVEMLQDKN-EEVRIEAIIGLSYRK------DKRVLSVLCDELKKN--TVYDDIIEAAGELGD-----------  246 (276)
T ss_dssp             HHHHHHHHHHTTCSC-HHHHHHHHHHHHHTT------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHCC-----------
T ss_pred             cccchhhhhhhhhhh-hhhhhhhccccchhh------hhhhHHHHHHHhCCh--HHHHHHHHHHHHcCC-----------
Confidence            123455666665543 777888888888763      346899999999753  588999999998852           


Q ss_pred             HHHHCCCcHhHHHhhccC-hh-HHHHHHHHH
Q 041643          485 AIIEFDGVPPLMRLLKIS-DR-AQVHGLVFL  513 (576)
Q Consensus       485 ~Iv~~ggi~~Lv~LL~~~-d~-vq~~A~~~L  513 (576)
                          .+.++.|.++|... |. ++..|+..|
T Consensus       247 ----~~~~~~L~~~l~~~~d~~vr~~A~~~L  273 (276)
T d1oyza_         247 ----KTLLPVLDTMLYKFDDNEIITSAIDKL  273 (276)
T ss_dssp             ----GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence                24789999999764 44 888888765

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.9e-06  Score=90.02  Aligned_cols=334  Identities=13%  Similarity=0.118  Sum_probs=207.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC--CchHHHHHHc
Q 041643          168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD--QETVRFIVDV  245 (576)
Q Consensus       168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~--~~~~~~iv~~  245 (576)
                      ...++..+...|..++..|..++..-.   ..+.....+|.+..++++.. ++++..|+.+|..++..  .+......-.
T Consensus       248 ~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~~-~~vr~~a~~~l~~~~~~l~~~~~~~~~~~  323 (588)
T d1b3ua_         248 RQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCE-AEVRAAASHKVKEFCENLSADCRENVIMS  323 (588)
T ss_dssp             HHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred             HHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence            345556677888888888888875311   12333456899999999888 99999999999998874  3334444445


Q ss_pred             CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCc-chhhhhHHHHHHhhhcc
Q 041643          246 LGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPK-PESAKTTIHSLVQMKKE  324 (576)
Q Consensus       246 Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~-~i~~~~si~~~v~~~~~  324 (576)
                      -.+|.+..++++.+..++..++.++..++..-  ..+ -.....+|.+..+|+.+..  ..+ ...  .+++.+......
T Consensus       324 ~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~--~~~-~~~~~l~p~l~~~l~d~~~--~v~~~~~--~~l~~~~~~~~~  396 (588)
T d1b3ua_         324 QILPCIKELVSDANQHVKSALASVIMGLSPIL--GKD-NTIEHLLPLFLAQLKDECP--EVRLNII--SNLDCVNEVIGI  396 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH--CHH-HHHHHTHHHHHHHHTCSCH--HHHHHHH--TTCHHHHHHSCH
T ss_pred             HHHHHHHHhhcCCChHHHHHHHHHHhhhhhcc--chh-HHHHHHHHHHHHHHHhhhh--hhhhHHH--HHHHHHHhhcch
Confidence            67899999999999999999888887776321  111 1223467888888864320  000 000  011111000000


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhH
Q 041643          325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAA  404 (576)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~  404 (576)
                      ..  ..          ..  =++.+....+..++.    ++..++.+++.++..-..         +    .|      .
T Consensus       397 ~~--~~----------~~--ll~~l~~~~~d~~~~----~r~~~~~~l~~l~~~~~~---------~----~~------~  439 (588)
T d1b3ua_         397 RQ--LS----------QS--LLPAIVELAEDAKWR----VRLAIIEYMPLLAGQLGV---------E----FF------D  439 (588)
T ss_dssp             HH--HH----------HH--HHHHHHHHHTCSSHH----HHHHHHHHHHHHHHHHCG---------G----GC------C
T ss_pred             hh--hh----------hH--HHHHHHHHHhcccHH----HHHHHHHHHHHHHHHcCh---------H----hH------H
Confidence            00  00          00  000000111222343    346788888877642000         0    01      1


Q ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHH
Q 041643          405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK--EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEH  482 (576)
Q Consensus       405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~--~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~  482 (576)
                      ..+.+.++.++.++. ..++..|++++|.|+..+...  ...++|.+.+++.+.+..++..++.+++.+...       -
T Consensus       440 ~~l~~~l~~~l~D~~-~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~-------~  511 (588)
T d1b3ua_         440 EKLNSLCMAWLVDHV-YAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV-------C  511 (588)
T ss_dssp             HHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH-------H
T ss_pred             HHHHHHHHhhccCCc-hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-------c
Confidence            245667777787654 788899999999998755431  235788999999999999999999999988621       1


Q ss_pred             HHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHHHH
Q 041643          483 SKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLT  561 (576)
Q Consensus       483 ~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~  561 (576)
                      .........+|.|++++....+ |+..++.+|..+....++.  ..+..+.+.|+.+..   =.|.+.+....+|+..|+
T Consensus       512 ~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~L~~---D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         512 GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQ---DQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH--hHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHh
Confidence            1122334578999999987766 8999999999986555443  234455666764321   134578888888988876


Q ss_pred             h
Q 041643          562 L  562 (576)
Q Consensus       562 ~  562 (576)
                      +
T Consensus       587 ~  587 (588)
T d1b3ua_         587 L  587 (588)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=7.5e-06  Score=86.70  Aligned_cols=296  Identities=15%  Similarity=0.091  Sum_probs=181.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC---Cch
Q 041643          162 AWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD---QET  238 (576)
Q Consensus       162 ~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~---~~~  238 (576)
                      ..+..++.-|++.+...|..|+..|..++..- ...+.  ....||.|.+++++ + .+.+..++..|.++...   ++.
T Consensus        10 ~~i~~l~~~l~~~~~~~R~~a~~~l~~ia~~l-g~~~~--~~~lip~l~~~~~~-~-~ev~~~~~~~l~~~~~~~~~~~~   84 (588)
T d1b3ua_          10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALAL-GVERT--RSELLPFLTDTIYD-E-DEVLLALAEQLGTFTTLVGGPEY   84 (588)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHS-CHHHH--HHTHHHHHHHTCCC-C-HHHHHHHHHHHTTCSGGGTSGGG
T ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-CcHhh--HHHHHHHHHHHhcC-c-HHHHHHHHHHHHHHHHHcCChhH
Confidence            33445688899999999999999999887531 12121  13358888898865 4 56788888888887652   333


Q ss_pred             HHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC-hHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHH
Q 041643          239 VRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELD-SIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHS  317 (576)
Q Consensus       239 ~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~-~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~  317 (576)
                      .     ...+|+|..++.+.+..++..|+.++..++... ++.-...    .+|.+..|..++..   ........-+..
T Consensus        85 ~-----~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~----l~p~i~~L~~~~~~---~~r~~a~~ll~~  152 (588)
T d1b3ua_          85 V-----HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH----FVPLVKRLAGGDWF---TSRTSACGLFSV  152 (588)
T ss_dssp             G-----GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHT----HHHHHHHHHTCSSH---HHHHHHGGGHHH
T ss_pred             H-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHhcccch---HHHHHHHHHHHH
Confidence            3     345788889999998999999999999998753 2322222    13433344443310   000000000000


Q ss_pred             HHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhh
Q 041643          318 LVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAF  397 (576)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~  397 (576)
                      +.  .........           .  -.+........++|.|    +..++.++..++..-..         +..    
T Consensus       153 ~~--~~~~~~~~~-----------~--l~~~~~~l~~D~~~~V----R~~a~~~l~~~~~~~~~---------~~~----  200 (588)
T d1b3ua_         153 CY--PRVSSAVKA-----------E--LRQYFRNLCSDDTPMV----RRAAASKLGEFAKVLEL---------DNV----  200 (588)
T ss_dssp             HT--TTSCHHHHH-----------H--HHHHHHHHHTCSCHHH----HHHHHHHHHHHHHTSCH---------HHH----
T ss_pred             HH--HHhhHHHHH-----------H--HHHHHHHHhccCCHHH----HHHHHHHHHHHHHHhcH---------HHH----
Confidence            00  000000000           0  0000001112235554    46788888888754211         111    


Q ss_pred             ccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCC
Q 041643          398 KTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK--EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPD  475 (576)
Q Consensus       398 k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~--~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~  475 (576)
                            ...+++.|..++++.+ +.++..|+.+++.++...+..  ...++|.+..++.+.+..|+..++.+|++++..-
T Consensus       201 ------~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~  273 (588)
T d1b3ua_         201 ------KSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV  273 (588)
T ss_dssp             ------HHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH
T ss_pred             ------HHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHh
Confidence                  1235666777776654 788999999999998765532  2357888899999999999999999999987321


Q ss_pred             CCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhccc
Q 041643          476 NFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSA  520 (576)
Q Consensus       476 n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~  520 (576)
                             ...+.....++.+..++...+. ++..|+..+..++...
T Consensus       274 -------~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l  312 (588)
T d1b3ua_         274 -------GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -------CHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -------hhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence                   1223444678899999988776 8888888887776443

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=1.7e-05  Score=74.83  Aligned_cols=63  Identities=11%  Similarity=0.009  Sum_probs=54.2

Q ss_pred             cCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcC
Q 041643          203 EGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAEL  276 (576)
Q Consensus       203 ~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~  276 (576)
                      ....+.|+++|++++ +.++..|+.+|..+..          ..++|.|+++|++++..++..|+.+|+.+...
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~   80 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC   80 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence            456788999999988 9999999999988753          13689999999999999999999999988743

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.90  E-value=1.6e-06  Score=72.76  Aligned_cols=85  Identities=20%  Similarity=0.284  Sum_probs=69.1

Q ss_pred             HHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 041643          407 VLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAI  486 (576)
Q Consensus       407 vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~I  486 (576)
                      .++.|++.|.+.+ +.++..|+.+||++.      ..+.+|.|+.+|++.++.|+..|+++|+++...            
T Consensus        23 ~~~~L~~~l~d~~-~~vR~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~~------------   83 (111)
T d1te4a_          23 AFEPLLESLSNED-WRIRGAAAWIIGNFQ------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE------------   83 (111)
T ss_dssp             THHHHHHGGGCSC-HHHHHHHHHHHGGGC------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH------------
T ss_pred             HHHHHHHHHcCCC-HHHHHHHHHHHHhcc------hhhhHHHHHhhhccchhHHHHHHHHHHHHhCcc------------
Confidence            3677888888655 889999999999874      345799999999999999999999999998421            


Q ss_pred             HHCCCcHhHHHhhccChh-HHHHHHHHH
Q 041643          487 IEFDGVPPLMRLLKISDR-AQVHGLVFL  513 (576)
Q Consensus       487 v~~ggi~~Lv~LL~~~d~-vq~~A~~~L  513 (576)
                         +.++.|..+++..+. ++..|+.+|
T Consensus        84 ---~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          84 ---RVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             ---HHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             ---chHHHHHHHHcCCCHHHHHHHHHHH
Confidence               246778889988777 888887755

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=0.0004  Score=72.34  Aligned_cols=268  Identities=13%  Similarity=0.102  Sum_probs=156.2

Q ss_pred             chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHH--hcCCHHHHHHHHccC----------------CCh
Q 041643          158 DPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIV--EEGGILPLLKLLKEA----------------ASP  219 (576)
Q Consensus       158 ~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~--~~GgIppLV~LL~~g----------------~~~  219 (576)
                      +....+.|.+-.+..+++.+...-|+..|-.|.+. +++|..+.  +...+++|++.|+..                ...
T Consensus       161 e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~  239 (477)
T d1ho8a_         161 EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI  239 (477)
T ss_dssp             HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHH
T ss_pred             HHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccH
Confidence            33333445444455667777777888888888885 78998875  344599999999651                114


Q ss_pred             HHHHHHHHHHHHhhcCCchHHHHHHcC--CHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChH-----HHHHHHhcCCch
Q 041643          220 DAQTAAANALFNIATDQETVRFIVDVL--GVPIIVSVLGE-APVKVQVAVANLVARMAELDSI-----AQEEFVRENVTR  291 (576)
Q Consensus       220 ~~q~~AA~AL~nLa~~~~~~~~iv~~G--avp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~-----~r~~i~~~g~I~  291 (576)
                      ..|.++.-+++-|+-+++....+.+.+  .|+.|+++++. ..+.+...+..++.|+......     +...+...+ ++
T Consensus       240 Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~-~l  318 (477)
T d1ho8a_         240 QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGN-AL  318 (477)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHC-HH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcc-hh
Confidence            668999999999999888888888764  49999999965 5688888899999999864221     222334444 45


Q ss_pred             hHHHhhccccccCCCcchhh-hhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHH
Q 041643          292 SLISLLCMDIALDLPKPESA-KTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAE  370 (576)
Q Consensus       292 ~LV~LL~~~t~~~~~~~i~~-~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~  370 (576)
                      +++..|...... +. .+.. -..++..+.-...                           .....|.        .++.
T Consensus       319 ~~l~~L~~r~~~-De-dl~edl~~L~~~L~~~~k---------------------------~lTsfd~--------Y~~E  361 (477)
T d1ho8a_         319 PTVQSLSERKYS-DE-ELRQDISNLKEILENEYQ---------------------------ELTSFDE--------YVAE  361 (477)
T ss_dssp             HHHHHHHSSCCS-SH-HHHHHHHHHHHHHHHHHH---------------------------TCCHHHH--------HHHH
T ss_pred             HHHHHHhcCCCC-CH-HHHHHHHHHHHHHHHHHH---------------------------hcCcHHH--------HHHH
Confidence            667777544210 00 0000 0011111100000                           0000000        0111


Q ss_pred             HHH-HhhcCCccc--chhcccchHHHHhhhccCchhHHHHHHHHHHHhhh---------cCChhhHHHHHHHHHHHhcCC
Q 041643          371 ALW-KLSKGCLLS--LWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHE---------ESDAMLQTPAIRSIGCLAKTF  438 (576)
Q Consensus       371 ALw-~La~g~~~~--Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~---------~~~~~lq~~a~~aLgnLa~~~  438 (576)
                      ... .|.-++.+.  .-=.|   ..+  .|+.+.   -.++..|+.+|++         ++++.+..-|+-=||.+++..
T Consensus       362 v~Sg~L~WSP~H~se~FW~E---N~~--kf~e~~---~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~  433 (477)
T d1ho8a_         362 LDSKLLCWSPPHVDNGFWSD---NID--EFKKDN---YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL  433 (477)
T ss_dssp             HHHTCCCCCGGGGCHHHHHH---HSG--GGSSGG---GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhcCCCCCCCCcCChhHHHH---HHH--hhcccc---hHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHC
Confidence            100 000011100  00000   000  022111   1467888888862         223566667777899999988


Q ss_pred             chh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          439 PAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       439 ~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                      |..     +-|+=..+.+||.+.+++|+.+|-.|+.++-
T Consensus       434 P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         434 PESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             TTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            752     2244455778999999999999999998874

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00079  Score=66.82  Aligned_cols=256  Identities=12%  Similarity=0.084  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCcccHH-HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-Cc
Q 041643          162 AWVWSFISTIQMG--QIKSRVDAANELASLARDNNRNRK-IIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QE  237 (576)
Q Consensus       162 ~~v~~li~~L~~G--~~e~k~~AA~~L~~La~~~~~~~~-~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~  237 (576)
                      .++..++..+.++  +.+.|..|..++.++......... ........+.|..++.+++ ++.+..+..+|..+... ++
T Consensus       171 ~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~i~~~~~~  249 (458)
T d1ibrb_         171 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQ  249 (458)
T ss_dssp             HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCC-HHHHHHHHHHHHHHHHHhHH
Confidence            3444556777664  567888888888887754222111 1112223566777777777 99999999999999863 32


Q ss_pred             hHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHH
Q 041643          238 TVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHS  317 (576)
Q Consensus       238 ~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~  317 (576)
                      .-..-+.....+.+...+.+.+++++..+...+..++....  ...+.......   ....    ............+..
T Consensus       250 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~--~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~  320 (458)
T d1ibrb_         250 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM--DLAIEASEAAE---QGRP----PEHTSKFYAKGALQY  320 (458)
T ss_dssp             GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH--HHHHHHCCTTC---SSSC----SSCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHH---hhhH----HHHHHHHHHHHHHHH
Confidence            21111222234455666677888899999998888875321  11111111100   0000    000000000001110


Q ss_pred             HHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhh
Q 041643          318 LVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAF  397 (576)
Q Consensus       318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~  397 (576)
                      +.-.....             ....    .   ...+.++..    ++..+..++..++....+         .      
T Consensus       321 l~~~l~~~-------------~~~~----~---~~~~~~~~~----~~~~a~~~l~~l~~~~~~---------~------  361 (458)
T d1ibrb_         321 LVPILTQT-------------LTKQ----D---ENDDDDDWN----PCKAAGVCLMLLATCCED---------D------  361 (458)
T ss_dssp             HHHHHHHH-------------TTCC----C---SSCCTTCCS----HHHHHHHHHHHHHHHTTT---------T------
T ss_pred             HhhhHHhh-------------hhcc----h---hhhcccccc----HHHHHHHHHHHHHHhccH---------h------
Confidence            00000000             0000    0   000011112    345678888877642111         0      


Q ss_pred             ccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc-hh----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          398 KTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP-AK----EKRMIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       398 k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~-~~----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                           ....+++.+...+++.+ ..++..|+.+||.++.... ..    -..++|.|+..|++.++.|+..|+|+|++++
T Consensus       362 -----~~~~l~~~i~~~l~s~~-~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         362 -----IVPHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             -----HHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             -----hhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence                 11235566666776654 7889999999999986422 11    1247899999999999999999999999986

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.001  Score=73.75  Aligned_cols=333  Identities=14%  Similarity=0.113  Sum_probs=176.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCc-ccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC--ch
Q 041643          162 AWVWSFISTIQMGQIKSRVDAANELASLARDNN-RNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQ--ET  238 (576)
Q Consensus       162 ~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~-~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~--~~  238 (576)
                      .++..++..++..++..|..|+++|+.++.... ...... -...++.|++.+.+.+ +.+|+.|++||.++....  +-
T Consensus       436 ~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~~-~~V~~~a~~al~~l~~~~~~~l  513 (888)
T d1qbkb_         436 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDSN-KRVQEAACSAFATLEEEACTEL  513 (888)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSSC-HHHHHHHHHHHHHHHHHHTTSS
T ss_pred             hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhhhh
Confidence            345566788888899999999999988774211 111222 2457899999998888 999999999999998632  11


Q ss_pred             HHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC-hHH-HHHHHhcCCchhHHHhhccccccCCCcchh-hhhHH
Q 041643          239 VRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELD-SIA-QEEFVRENVTRSLISLLCMDIALDLPKPES-AKTTI  315 (576)
Q Consensus       239 ~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~-~~~-r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~-~~~si  315 (576)
                      ... . ...++.|+..+.....+....+..++..++... +.. +..+. ...+++|+.....-.  +..+... .-.++
T Consensus       514 ~p~-~-~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~--~~~~~~~~~le~l  588 (888)
T d1qbkb_         514 VPY-L-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKWNMLK--DEDKDLFPLLECL  588 (888)
T ss_dssp             GGG-H-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH-HHHHHHHHHHHTTSC--TTCTTHHHHHHHH
T ss_pred             hhH-H-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH-HHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence            111 1 124567778777766666666666777666311 011 11111 123455555443221  1111111 00122


Q ss_pred             HHHHhhhccccccccccCCCCCCCCCCCCCCCCccc-------------ccccCCHHHHHHHHHHHHHHHHHhhcCCccc
Q 041643          316 HSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKK-------------DRELETPEVKAKVRIACAEALWKLSKGCLLS  382 (576)
Q Consensus       316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~  382 (576)
                      ..++......-....     .+.+.+.   +..+..             ..+..|.+.    ...+...+..+..+-...
T Consensus       589 ~~i~~~~~~~~~~~~-----~~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~~~----~~~~l~~l~~l~~~l~~~  656 (888)
T d1qbkb_         589 SSVATALQSGFLPYC-----EPVYQRC---VNLVQKTLAQAMLNNAQPDQYEAPDKDF----MIVALDLLSGLAEGLGGN  656 (888)
T ss_dssp             HHHHHHSTTTTHHHH-----HHHHHHH---HHHHHHHHHHHHHHHHCTTTSCCCCTHH----HHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhHHHHhhhH-----HHHHHHH---HHHHHHHHHHHHHHhcccccccchhHHH----HHHHHHHHHHHHHHhhhh
Confidence            222211110000000     0000000   000000             001112221    233444444444221111


Q ss_pred             ---------c------hhcccchHHHHhhhc-----------cCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhc
Q 041643          383 ---------L------WSAESNAELRRSAFK-----------TNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAK  436 (576)
Q Consensus       383 ---------I------avae~~~~lrr~a~k-----------~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~  436 (576)
                               +      ...+..++.|+++|.           .-.|....+++.|+..|.++. ..+...++.++|.|+.
T Consensus       657 ~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~-~~v~~~a~~~ig~ia~  735 (888)
T d1qbkb_         657 IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF-ISVCNNATWAIGEISI  735 (888)
T ss_dssp             THHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGG-HHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHHHH
Confidence                     0      233445566766642           222334556666777776544 6788899999999987


Q ss_pred             CCchhh----hCcHHHHHHhhcCC--CHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccC-hh-HHHH
Q 041643          437 TFPAKE----KRMIGPLVALLSNR--NVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKIS-DR-AQVH  508 (576)
Q Consensus       437 ~~~~~~----~~~I~~LV~LL~~~--~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~-d~-vq~~  508 (576)
                      .....-    ..+++.|+.+|++.  ...++++++.||++++..    +++...--. ...+++++.-|... |. -+..
T Consensus       736 ~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~----~p~~~~~~l-~~~~~~~~~~l~~~~d~~ek~~  810 (888)
T d1qbkb_         736 QMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV----CPQEVAPML-QQFIRPWCTSLRNIRDNEEKDS  810 (888)
T ss_dssp             HTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH----CHHHHGGGG-GGTHHHHHHHHTTSCCSHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH----CHHHHHhhH-HHHHHHHHHHhccCCCcHHHHH
Confidence            544311    24678899999754  455899999999999742    133221111 23677888887653 33 5667


Q ss_pred             HHHHHHHHhcc
Q 041643          509 GLVFLCYLALS  519 (576)
Q Consensus       509 A~~~L~~lal~  519 (576)
                      |+..+|.+...
T Consensus       811 ~~~g~~~~i~~  821 (888)
T d1qbkb_         811 AFRGICTMISV  821 (888)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988643

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0028  Score=70.08  Aligned_cols=113  Identities=12%  Similarity=0.028  Sum_probs=80.9

Q ss_pred             HhHHHHHH-HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC--C
Q 041643          160 ILAWVWSF-ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD--Q  236 (576)
Q Consensus       160 i~~~v~~l-i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~--~  236 (576)
                      +...+... ...+++.+...|+.|..+|+.++....+...-.+ ...+|.|+.+|++.+ +.++..|+|+|+.++..  +
T Consensus       392 il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~  469 (888)
T d1qbkb_         392 LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVS  469 (888)
T ss_dssp             SHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHS
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhh
Confidence            33333333 3467777889999999999988754222111111 125788999998888 99999999999999862  2


Q ss_pred             chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 041643          237 ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAE  275 (576)
Q Consensus       237 ~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~  275 (576)
                      +.... .-...++.+++.+.+++..+++.|+++|.++..
T Consensus       470 ~~~~~-~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~  507 (888)
T d1qbkb_         470 QPPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEE  507 (888)
T ss_dssp             SCHHH-HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred             hhhhh-hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            22222 224578889998999999999999999999884

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=0.0014  Score=70.29  Aligned_cols=115  Identities=15%  Similarity=0.180  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhh----hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCC
Q 041643          403 AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE----KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFN  478 (576)
Q Consensus       403 a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~----~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~  478 (576)
                      ....+++.+++.+...++..++..++.++++++......-    ..++|.|...|++.+.+++..|+.+++.++...   
T Consensus       594 ~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~---  670 (861)
T d2bpta1         594 VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL---  670 (861)
T ss_dssp             GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHh---
Confidence            3456777888888777667788889999999987543211    246788999999999999999999999886321   


Q ss_pred             CHHHHHHHHHCCCcHhHHHhhccCh--h-HHHHHHHHHHHHhcccCc
Q 041643          479 RSEHSKAIIEFDGVPPLMRLLKISD--R-AQVHGLVFLCYLALSAGN  522 (576)
Q Consensus       479 ~~~~~~~Iv~~ggi~~Lv~LL~~~d--~-vq~~A~~~L~~lal~~~~  522 (576)
                      ..+-..++-  .-++.|++.|...+  . ++..++.+++.++.+.+.
T Consensus       671 ~~~~~~~~~--~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~  715 (861)
T d2bpta1         671 EEDFRRYSD--AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA  715 (861)
T ss_dssp             GGGGHHHHH--HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred             HHHhHhhHH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            112222222  24667888887543  2 666788888888766554

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.30  E-value=0.00019  Score=59.47  Aligned_cols=84  Identities=17%  Similarity=0.160  Sum_probs=69.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHH
Q 041643          165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVD  244 (576)
Q Consensus       165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~  244 (576)
                      ..++..|+..+...|..|+.+|+.+..           .+.+|+|+++|++.+ +.++..|+++|+.+..          
T Consensus        25 ~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~-~~VR~~a~~aL~~i~~----------   82 (111)
T d1te4a_          25 EPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDS-GFVRSGAARSLEQIGG----------   82 (111)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCC-THHHHHHHHHHHHHCS----------
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhhccch-hHHHHHHHHHHHHhCc----------
Confidence            345788999999999999999876531           236899999999988 9999999999998843          


Q ss_pred             cCCHHHHHHhhcCCChhHHHHHHHHH
Q 041643          245 VLGVPIIVSVLGEAPVKVQVAVANLV  270 (576)
Q Consensus       245 ~Gavp~LV~lL~s~~~~vq~~Aa~aL  270 (576)
                      .++++.|..++++++..++..|+.+|
T Consensus        83 ~~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          83 ERVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            23688999999999999999888776

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0079  Score=59.21  Aligned_cols=293  Identities=11%  Similarity=0.079  Sum_probs=157.5

Q ss_pred             HHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCC-ChHHHHHHHHHHHHhhcCCchH-
Q 041643          164 VWSFISTIQMG--QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAA-SPDAQTAAANALFNIATDQETV-  239 (576)
Q Consensus       164 v~~li~~L~~G--~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~-~~~~q~~AA~AL~nLa~~~~~~-  239 (576)
                      +-.++..+.++  +...+..+..++..+....+.....-.-...++.++..+.+++ +...+..|..++.++....... 
T Consensus       129 ~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~  208 (458)
T d1ibrb_         129 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF  208 (458)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             hHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhh
Confidence            33346666654  4566667777777766432222111111234788888887642 3678999999999988643221 


Q ss_pred             -HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHH
Q 041643          240 -RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSL  318 (576)
Q Consensus       240 -~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~  318 (576)
                       .........+.+..++.+++++++..+..++..++...+..   + ..-..+.+..++..                   
T Consensus       209 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~---~-~~~l~~~~~~~~~~-------------------  265 (458)
T d1ibrb_         209 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY---M-ETYMGPALFAITIE-------------------  265 (458)
T ss_dssp             TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG---C-TTTTTTTHHHHHHH-------------------
T ss_pred             hhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHH---H-HHHHHHHHHHHHHH-------------------
Confidence             12222335677888888889999999999999998654321   0 00111111111110                   


Q ss_pred             HhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc-----hhccc-chHH
Q 041643          319 VQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL-----WSAES-NAEL  392 (576)
Q Consensus       319 v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I-----avae~-~~~l  392 (576)
                                                       ....+++++    +..|...+..++.......     ..... ....
T Consensus       266 ---------------------------------~~~~~~~~~----~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  308 (458)
T d1ibrb_         266 ---------------------------------AMKSDIDEV----ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH  308 (458)
T ss_dssp             ---------------------------------HHHCSSHHH----HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred             ---------------------------------HhccccHHH----HHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHH
Confidence                                             001123332    2334444444432100000     00000 0000


Q ss_pred             HHhhhccCchhHHHHHHHHHHHhhhcC------ChhhHHHHHHHHHHHhcCCchh-hhCcHHHHHHhhcCCCHHHHHHHH
Q 041643          393 RRSAFKTNSPAAKAVLDQLLRLIHEES------DAMLQTPAIRSIGCLAKTFPAK-EKRMIGPLVALLSNRNVDVATEAV  465 (576)
Q Consensus       393 rr~a~k~~s~a~~~vV~~Ll~lL~~~~------~~~lq~~a~~aLgnLa~~~~~~-~~~~I~~LV~LL~~~~~~V~~eAa  465 (576)
                      ....+.  ......+++.+...+.+.+      +..+...+..+++.++...+.. -..+++.+...|++.+..++..|.
T Consensus       309 ~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal  386 (458)
T d1ibrb_         309 TSKFYA--KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV  386 (458)
T ss_dssp             CCCCHH--HHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHH--HHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHH
Confidence            000000  0011233444444443211      1236667778888887655431 113456666778899999999999


Q ss_pred             HHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCc
Q 041643          466 IALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGN  522 (576)
Q Consensus       466 ~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~  522 (576)
                      .+|+.++.+..   .+..+.. -...++.|+.+++..++ |+..|+++|+.++...++
T Consensus       387 ~~l~~i~~~~~---~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         387 MAFGCILEGPE---PSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE  440 (458)
T ss_dssp             HHHHHTSSSSC---TTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhcC---HhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc
Confidence            99999984211   1111111 13467888999988777 899999999988755443

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0063  Score=68.81  Aligned_cols=271  Identities=13%  Similarity=0.091  Sum_probs=148.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHH
Q 041643          163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFI  242 (576)
Q Consensus       163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~i  242 (576)
                      .+..++..+++-+.+.|..|+..|.+.-..+...-..-.....++.|+++|.+.+ +++|..|+.+|..|+..-...  .
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~--~   80 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--Q   80 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--H
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHh--h
Confidence            3556678889999999999998887654321111111011235789999998877 999999999999998753322  1


Q ss_pred             HHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChH-HHHHHHhcCCchhHHHhhccccccCCCcc-hhhhhHHHHHHh
Q 041643          243 VDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSI-AQEEFVRENVTRSLISLLCMDIALDLPKP-ESAKTTIHSLVQ  320 (576)
Q Consensus       243 v~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~-~r~~i~~~g~I~~LV~LL~~~t~~~~~~~-i~~~~si~~~v~  320 (576)
                      + ...++.|...+.+++...+..++.+|..+...-+. ....-.....++.++..|.....  .... .....++..+..
T Consensus        81 ~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          81 V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIA--KQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHS--CCSCHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHH
Confidence            1 12466777777777778888887777765432111 00000000122333333322110  0110 000011111100


Q ss_pred             hhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccC
Q 041643          321 MKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTN  400 (576)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~  400 (576)
                      ....      .|....+... .  -++.+.......++.    ++..|..+|..|+......             .|   
T Consensus       158 l~~~------~g~~l~~~~~-~--il~~l~~~l~~~~~~----vR~~A~~~l~~l~~~~~~~-------------~~---  208 (1207)
T d1u6gc_         158 MLSR------QGGLLVNFHP-S--ILTCLLPQLTSPRLA----VRKRTIIALGHLVMSCGNI-------------VF---  208 (1207)
T ss_dssp             HHHH------TCSSCTTTHH-H--HHHHHGGGGGCSSHH----HHHHHHHHHHHHTTTC-----------------C---
T ss_pred             HHHH------hhHhhHHHHH-H--HHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHCCHH-------------HH---
Confidence            0000      0000000000 0  000000112223343    4578899999887543221             01   


Q ss_pred             chhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          401 SPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       401 s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                          ..+++.++..+..+++......++.++|.+++..+..    -..++|.+++.++..+.++++.+..++..+.
T Consensus       209 ----~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~  280 (1207)
T d1u6gc_         209 ----VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFV  280 (1207)
T ss_dssp             ----TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence                1356777776665555566667888899998754432    1357899999999999999999999998886

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0045  Score=70.10  Aligned_cols=230  Identities=17%  Similarity=0.163  Sum_probs=136.8

Q ss_pred             HHHHHHHHccCCChHHHHHHHHHHHHhhcCC----chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHH
Q 041643          206 ILPLLKLLKEAASPDAQTAAANALFNIATDQ----ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQ  281 (576)
Q Consensus       206 IppLV~LL~~g~~~~~q~~AA~AL~nLa~~~----~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r  281 (576)
                      |..|++=+.+.+ ++.++.|..-|.+.-...    ++..   ....++.|+++|.+.+.+||..|+.+|+.|+...++.+
T Consensus         5 ~~~ll~k~~~~D-~d~R~ma~~dl~~~l~~~~~~~~~~~---~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~   80 (1207)
T d1u6gc_           5 ISNLLEKMTSSD-KDFRFMATNDLMTELQKDSIKLDDDS---ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ   80 (1207)
T ss_dssp             HHHHHHHTTCSS-HHHHHHHHHHHHHHTSSSCCSCCTTH---HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHhcCCCC-HhHHHHHHHHHHHHHhhcccccChHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh
Confidence            456777778888 999999998887754321    1111   11257889999999999999999999999987654432


Q ss_pred             HHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHH
Q 041643          282 EEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVK  361 (576)
Q Consensus       282 ~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk  361 (576)
                      .    ...++.|+..+.++                                                        +.+  
T Consensus        81 ~----~~l~~~L~~~l~~~--------------------------------------------------------~~~--   98 (1207)
T d1u6gc_          81 V----ETIVDTLCTNMLSD--------------------------------------------------------KEQ--   98 (1207)
T ss_dssp             H----HHHHHHHHHHTTCS--------------------------------------------------------SSH--
T ss_pred             H----HHHHHHHHHHhcCC--------------------------------------------------------chh--
Confidence            1    12233444433211                                                        001  


Q ss_pred             HHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh
Q 041643          362 AKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK  441 (576)
Q Consensus       362 ~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~  441 (576)
                        .+..++.+|..+...-....    .+..+.       ...++.+++.|...+.+..+..++..|+..++.+.+.+...
T Consensus        99 --~r~~~~~~L~~i~~~l~~~~----~~~~~~-------~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~  165 (1207)
T d1u6gc_          99 --LRDISSIGLKTVIGELPPAS----SGSALA-------ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL  165 (1207)
T ss_dssp             --HHHHHHHHHHHHHHHCC---------CCTH-------HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS
T ss_pred             --hhHHHHHHHHHHHHhccccc----ccchhH-------HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHh
Confidence              12234445544422100000    000000       01234566777777766665788899999999998755431


Q ss_pred             ----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh--HHHHHHHHHHH
Q 041643          442 ----EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR--AQVHGLVFLCY  515 (576)
Q Consensus       442 ----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~--vq~~A~~~L~~  515 (576)
                          ...+++.|+..|++.+..|++.|+.+|+.++..-   +.+..     ..-++.+++.|..++.  ++..++.+++.
T Consensus       166 l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~---~~~~~-----~~~~~~ll~~l~~~~~~~~~~~~~~~l~~  237 (1207)
T d1u6gc_         166 LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC---GNIVF-----VDLIEHLLSELSKNDSMSTTRTYIQCIAA  237 (1207)
T ss_dssp             CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-----TTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC---CHHHH-----HHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence                2346788888889999999999999999997422   11111     1235666666654332  44456666666


Q ss_pred             HhcccCc
Q 041643          516 LALSAGN  522 (576)
Q Consensus       516 lal~~~~  522 (576)
                      ++...|.
T Consensus       238 l~~~~~~  244 (1207)
T d1u6gc_         238 ISRQAGH  244 (1207)
T ss_dssp             HHHHSSG
T ss_pred             HHHHcch
Confidence            6544443

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.06  Score=55.56  Aligned_cols=247  Identities=14%  Similarity=0.114  Sum_probs=141.9

Q ss_pred             HHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHc--CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 041643          207 LPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDV--LGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEF  284 (576)
Q Consensus       207 ppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~--Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i  284 (576)
                      +|++.+|.+++ .-.+..+...+..|+.........++.  .....+-.+..+++.+.+..++..+..+... +.+|..|
T Consensus       125 ~~f~~~l~~~d-~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~f  202 (477)
T d1ho8a_         125 QLFDVSLKGDF-QTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVI  202 (477)
T ss_dssp             HHHHHCSCSSH-HHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred             HHHHHhccCch-hHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcC-ccHHHHH
Confidence            57777776655 666777777778887754332222211  0122233333667788888888888888864 7889888


Q ss_pred             Hh--cCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHH
Q 041643          285 VR--ENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKA  362 (576)
Q Consensus       285 ~~--~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~  362 (576)
                      -.  ...+++|+.+|+.-.   .++      +...++                    ..++++.          .    .
T Consensus       203 w~~~~~~~~~l~~il~~a~---~~~------~~~~~~--------------------~~~~~~~----------~----~  239 (477)
T d1ho8a_         203 WLHEKKFMPTLFKILQRAT---DSQ------LATRIV--------------------ATNSNHL----------G----I  239 (477)
T ss_dssp             HTTHHHHHHHHHHHHHHHH---C---------------------------------------CC----------H----H
T ss_pred             HHcccchHHHHHHHHHHHh---ccc------ccchhh--------------------cccCCCc----------c----H
Confidence            54  456899999986421   000      000000                    0000000          1    1


Q ss_pred             HHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcC-----
Q 041643          363 KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKT-----  437 (576)
Q Consensus       363 ~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~-----  437 (576)
                      +++=.+..++|-|++.....       ..+....        -..+..|+.+++....+++..-++.++-|+...     
T Consensus       240 Ql~Y~~ll~lWlLSF~~~~~-------~~l~~~~--------~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~  304 (477)
T d1ho8a_         240 QLQYHSLLLIWLLTFNPVFA-------NELVQKY--------LSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQH  304 (477)
T ss_dssp             HHHHHHHHHHHHHTTSHHHH-------HHHHTTS--------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTH
T ss_pred             HHHHHHHHHHHHHHcCHHHH-------HHHHHhh--------hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhh
Confidence            23446899999999853211       0111100        022344444444433344444444444444210     


Q ss_pred             --------------------------------------------------C-----------------------------
Q 041643          438 --------------------------------------------------F-----------------------------  438 (576)
Q Consensus       438 --------------------------------------------------~-----------------------------  438 (576)
                                                                        |                             
T Consensus       305 ~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~  384 (477)
T d1ho8a_         305 KKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNID  384 (477)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSG
T ss_pred             hhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHH
Confidence                                                              0                             


Q ss_pred             --chhhhCcHHHHHHhhc----------CCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-H
Q 041643          439 --PAKEKRMIGPLVALLS----------NRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-A  505 (576)
Q Consensus       439 --~~~~~~~I~~LV~LL~----------~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-v  505 (576)
                        .+.+-.++..|+++|+          +.++.+..=|+.=|+.|+-    .+|+-+..+.+.|+=..+++|+.+.|+ |
T Consensus       385 kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr----~~P~gr~il~~lg~K~~vM~Lm~h~d~~V  460 (477)
T d1ho8a_         385 EFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVE----LLPESIDVLDKTGGKADIMELLNHSDSRV  460 (477)
T ss_dssp             GGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHH----HCTTHHHHHHHHSHHHHHHHHTSCSSHHH
T ss_pred             hhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHH----HCcchhHHHHHcCcHHHHHHHhcCCCHHH
Confidence              0001135888999995          2355566678999999983    246777777788887788899998888 9


Q ss_pred             HHHHHHHHHHHh
Q 041643          506 QVHGLVFLCYLA  517 (576)
Q Consensus       506 q~~A~~~L~~la  517 (576)
                      +.+|+.++-.+-
T Consensus       461 r~eAL~avQklm  472 (477)
T d1ho8a_         461 KYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999876553

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.79  Score=47.92  Aligned_cols=240  Identities=13%  Similarity=0.098  Sum_probs=126.4

Q ss_pred             CCHHHHHHHHHHHHHHhhcCcccHH-HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHH
Q 041643          174 GQIKSRVDAANELASLARDNNRNRK-IIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPII  251 (576)
Q Consensus       174 G~~e~k~~AA~~L~~La~~~~~~~~-~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~L  251 (576)
                      .+.+.|..|..++.++...-+.+-. .......++.|.+.+++++ ++.+..+..+|..++.. ++.-...+..-..+.+
T Consensus       193 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~  271 (861)
T d2bpta1         193 TSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED-IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALT  271 (861)
T ss_dssp             CCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSC-HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888888888887654222211 1111224567778888888 99999999999999873 2222222222122334


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccc
Q 041643          252 VSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTN  331 (576)
Q Consensus       252 V~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~  331 (576)
                      ....++.+++++..+...+..++...............          ... .... .. ...+..++......      
T Consensus       272 ~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~----------~~~-~~~~-~~-~~~l~~i~~~l~~~------  332 (861)
T d2bpta1         272 IATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQ----------SPL-QSYN-FA-LSSIKDVVPNLLNL------  332 (861)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----------CSC-CCCC-HH-HHHHHHHHHHHHHH------
T ss_pred             HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------hHH-HHHH-HH-HHHHHHHHHHHHHH------
Confidence            45556778889988888888887432211111111110          000 0000 00 00111111000000      


Q ss_pred             cCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHH
Q 041643          332 VTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQL  411 (576)
Q Consensus       332 ~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~L  411 (576)
                             +...     .  ...+.++..    ....+..+|..++....+.                    ....+.+.+
T Consensus       333 -------l~~~-----~--~~~~~~~~~----~~~~~~~~l~~~~~~~~~~--------------------~~~~~~~~~  374 (861)
T d2bpta1         333 -------LTRQ-----N--EDPEDDDWN----VSMSAGACLQLFAQNCGNH--------------------ILEPVLEFV  374 (861)
T ss_dssp             -------TTCC-----C--CC-CCCCCH----HHHHHHHHHHHHHHHHGGG--------------------GHHHHHHHH
T ss_pred             -------HHHh-----h--ccccchhHH----HHHHHHHHHHHHHhhcchh--------------------hhhhhcchh
Confidence                   0000     0  001111212    2345666666655321110                    011223333


Q ss_pred             HHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643          412 LRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFV  472 (576)
Q Consensus       412 l~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla  472 (576)
                      ...+.+. +...+..++.+++.++......     -..+++.++..|.+.++.|+..|+|++++++
T Consensus       375 ~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~  439 (861)
T d2bpta1         375 EQNITAD-NWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIA  439 (861)
T ss_dssp             HHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhH-HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHH
Confidence            3444443 3677888999999998654321     1246788999999999999999999999886

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=1.9  Score=45.07  Aligned_cols=288  Identities=13%  Similarity=0.081  Sum_probs=145.9

Q ss_pred             HHHHhcC--CHHHHHHHHHHHHHHhhcCcccHH-HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHH
Q 041643          168 ISTIQMG--QIKSRVDAANELASLARDNNRNRK-IIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIV  243 (576)
Q Consensus       168 i~~L~~G--~~e~k~~AA~~L~~La~~~~~~~~-~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv  243 (576)
                      +..+...  +.+.|..|...+.+........-. .....-.++.+..++.+++ ++.+..+..+|..+... ++.-..-+
T Consensus       178 ~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~v~~~~~~~l~~l~~~~~~~~~~~~  256 (876)
T d1qgra_         178 IQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYMETYM  256 (876)
T ss_dssp             HHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGGCHHHH
T ss_pred             HHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            5556544  467788887777766543221110 0111112455666777777 89999999999999873 44333333


Q ss_pred             HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhc
Q 041643          244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK  323 (576)
Q Consensus       244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~  323 (576)
                      .....+.+...+.+..++++..+...+..++.....   ....  ..+........    ..............++....
T Consensus       257 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~  327 (876)
T d1qgra_         257 GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD---LAIE--ASEAAEQGRPP----EHTSKFYAKGALQYLVPILT  327 (876)
T ss_dssp             TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHSSCC----SSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH---HHHH--hhHHHHhhhhH----HHHHHHHHHHHHHHHHHhhH
Confidence            344556677777788888888888777777642111   1100  00111110000    00000000001111110000


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchh
Q 041643          324 EMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPA  403 (576)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a  403 (576)
                      ..             +...    .   ...+.++..    +...|..++-.++....+         .           .
T Consensus       328 ~~-------------~~~~----~---~~~~~~~~~----~~~~a~~~l~~l~~~~~~---------~-----------~  363 (876)
T d1qgra_         328 QT-------------LTKQ----D---ENDDDDDWN----PCKAAGVCLMLLATCCED---------D-----------I  363 (876)
T ss_dssp             HH-------------TTCC----C---SSCCTTCCC----HHHHHHHHHHHHHHHHGG---------G-----------G
T ss_pred             HH-------------HHhc----c---cccccccch----HHHHHHHHHHHHHHHhhh---------h-----------h
Confidence            00             0000    0   000001111    234566777666532110         0           1


Q ss_pred             HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCC
Q 041643          404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFN  478 (576)
Q Consensus       404 ~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~  478 (576)
                      ...+++.+...+.+.+ ...+..++.++|.+.......     -..+++.++..+.+.++.|+..|+|++++++..-   
T Consensus       364 ~~~~~~~i~~~l~~~~-~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~---  439 (876)
T d1qgra_         364 VPHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL---  439 (876)
T ss_dssp             HHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC---
T ss_pred             hhhhHHHHHHhhccch-HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHc---
Confidence            1234444555555543 667778888999987644321     1246888999999999999999999999987311   


Q ss_pred             CHHHHHHHHHCCCcHhHHHh----hccChhHHHHHHHHHHHHh
Q 041643          479 RSEHSKAIIEFDGVPPLMRL----LKISDRAQVHGLVFLCYLA  517 (576)
Q Consensus       479 ~~~~~~~Iv~~ggi~~Lv~L----L~~~d~vq~~A~~~L~~la  517 (576)
                          ...+.....++.++..    +.....++..+++++.++.
T Consensus       440 ----~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         440 ----PEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLA  478 (876)
T ss_dssp             ----GGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             ----chhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence                0111122334444443    3332237777777776664

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=4.3  Score=42.22  Aligned_cols=113  Identities=11%  Similarity=0.125  Sum_probs=71.9

Q ss_pred             HHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCcccHHHHHh--cCCHHHHHHHHccCC-ChHHHHHHHHHHHHhhcCCch
Q 041643          164 VWSFISTIQMG--QIKSRVDAANELASLARDNNRNRKIIVE--EGGILPLLKLLKEAA-SPDAQTAAANALFNIATDQET  238 (576)
Q Consensus       164 v~~li~~L~~G--~~e~k~~AA~~L~~La~~~~~~~~~I~~--~GgIppLV~LL~~g~-~~~~q~~AA~AL~nLa~~~~~  238 (576)
                      +-.++..+.++  +...|..+..+|..++..-..  ..+..  ...++.++..|.+.+ +...+..|..++.+.......
T Consensus       130 i~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  207 (876)
T d1qgra_         130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhh
Confidence            34446666654  456777788888887653211  11111  234788888886542 267888999999887653221


Q ss_pred             HH--HHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCCh
Q 041643          239 VR--FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDS  278 (576)
Q Consensus       239 ~~--~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~  278 (576)
                      ..  .....-.++.+...+.+++++++..+..++..+....+
T Consensus       208 ~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~  249 (876)
T d1qgra_         208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY  249 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence            11  11111235677788888889999999999999886544

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.94  E-value=0.064  Score=50.36  Aligned_cols=65  Identities=15%  Similarity=0.154  Sum_probs=34.7

Q ss_pred             hcCCHHHHHHHHccCCChHHHHHHHHHHH-----HhhcCCc--hHHHHHHcCCHHHHHHhhcCCChhHHHHHH
Q 041643          202 EEGGILPLLKLLKEAASPDAQTAAANALF-----NIATDQE--TVRFIVDVLGVPIIVSVLGEAPVKVQVAVA  267 (576)
Q Consensus       202 ~~GgIppLV~LL~~g~~~~~q~~AA~AL~-----nLa~~~~--~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa  267 (576)
                      +.-.+..|..||+..+ +.++..||..|.     .|..+++  .+..+++.=..+.|..++++++..|+..++
T Consensus        64 ~~a~~~~L~~Ll~D~d-~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa  135 (233)
T d1lrva_          64 RYSPVEALTPLIRDSD-EVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVV  135 (233)
T ss_dssp             TTSCGGGGGGGTTCSS-HHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHH
T ss_pred             hcCCHHHHHHHhcCCC-HHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHH
Confidence            3345777888888877 888888876542     2222221  122333333344455555555555544443