Citrus Sinensis ID: 041666


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80-------
KQPSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSSSTIRQKINVNGHVSISLKKVSDS
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccc
KQPSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSSSTIRQKINVNGHVSISLKKVSDS
KQPSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSSStirqkinvnghvsislkkvsds
KQPSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSSSTIRQKINVNGHVSISLKKVSDS
***********VDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSSSTIRQKINVNGH***********
***SETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELL*************************
*********QLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSSSTIRQKINVNGHVSISLKKVSDS
***SETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSSS*I*Q******H***********
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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KQPSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSSSTIRQKINVNGHVSISLKKVSDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query87 2.2.26 [Sep-21-2011]
A7SK27349 Probable ethanolamine kin N/A no 0.701 0.174 0.409 7e-11
Q554D8447 Probable ethanolamine kin yes no 0.712 0.138 0.403 2e-09
O55229394 Choline/ethanolamine kina yes no 0.643 0.142 0.446 5e-09
Q869T9349 Probable ethanolamine kin no no 0.712 0.177 0.322 1e-08
O54783394 Choline/ethanolamine kina yes no 0.609 0.134 0.452 2e-08
Q9Y259395 Choline/ethanolamine kina yes no 0.609 0.134 0.433 2e-08
Q9D4V0412 Ethanolamine kinase 1 (Fr no no 0.666 0.140 0.431 8e-08
Q9HBU6452 Ethanolamine kinase 1 OS= no no 0.689 0.132 0.416 3e-07
O54804453 Choline kinase alpha OS=M no no 0.551 0.105 0.395 4e-07
Q01134453 Choline kinase alpha OS=R no no 0.689 0.132 0.360 5e-07
>sp|A7SK27|EKI_NEMVE Probable ethanolamine kinase OS=Nematostella vectensis GN=etnk PE=3 SV=1 Back     alignment and function desciption
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 42/61 (68%)

Query: 3   PSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELL 62
           PS  E+ +L     ++ LA H FWG+WGL+ A+ ++IDF++ EYA  R  +Y+++K++ L
Sbjct: 285 PSSREIEKLYVHVNQFALAAHFFWGVWGLVQAHYSEIDFDFLEYAITRLNEYYLRKEKFL 344

Query: 63  S 63
           S
Sbjct: 345 S 345




Highly specific for ethanolamine phosphorylation. May be a rate-controlling step in phosphatidylethanolamine biosynthesis.
Nematostella vectensis (taxid: 45351)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 8EC: 2
>sp|Q554D8|EKIB_DICDI Probable ethanolamine kinase B OS=Dictyostelium discoideum GN=etnkB PE=3 SV=1 Back     alignment and function description
>sp|O55229|CHKB_MOUSE Choline/ethanolamine kinase OS=Mus musculus GN=Chkb PE=1 SV=3 Back     alignment and function description
>sp|Q869T9|EKIA_DICDI Probable ethanolamine kinase A OS=Dictyostelium discoideum GN=etnkA PE=3 SV=1 Back     alignment and function description
>sp|O54783|CHKB_RAT Choline/ethanolamine kinase OS=Rattus norvegicus GN=Chkb PE=1 SV=3 Back     alignment and function description
>sp|Q9Y259|CHKB_HUMAN Choline/ethanolamine kinase OS=Homo sapiens GN=CHKB PE=1 SV=3 Back     alignment and function description
>sp|Q9D4V0|EKI1_MOUSE Ethanolamine kinase 1 (Fragment) OS=Mus musculus GN=Etnk1 PE=2 SV=1 Back     alignment and function description
>sp|Q9HBU6|EKI1_HUMAN Ethanolamine kinase 1 OS=Homo sapiens GN=ETNK1 PE=1 SV=1 Back     alignment and function description
>sp|O54804|CHKA_MOUSE Choline kinase alpha OS=Mus musculus GN=Chka PE=1 SV=3 Back     alignment and function description
>sp|Q01134|CHKA_RAT Choline kinase alpha OS=Rattus norvegicus GN=Chka PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query87
388512247 364 unknown [Medicago truncatula] 0.919 0.219 0.679 3e-25
357443479 350 Choline/ethanolamine kinase [Medicago tr 0.919 0.228 0.679 4e-25
224066603 360 predicted protein [Populus trichocarpa] 0.885 0.213 0.662 7e-24
351724363 359 GmCK1p [Glycine max] gi|1438879|gb|AAC49 0.770 0.186 0.746 1e-23
363808234 362 uncharacterized protein LOC100799515 [Gl 0.885 0.212 0.679 4e-23
255566742 356 choline/ethanolamine kinase, putative [R 0.839 0.205 0.649 4e-23
351726586 362 GmCK2p [Glycine max] gi|1438881|gb|AAC49 0.758 0.182 0.742 4e-23
388514709 350 unknown [Lotus japonicus] 0.781 0.194 0.705 1e-22
225470840 358 PREDICTED: choline/ethanolamine kinase [ 0.839 0.203 0.643 5e-22
297846390 352 predicted protein [Arabidopsis lyrata su 0.770 0.190 0.656 9e-22
>gi|388512247|gb|AFK44185.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 66/81 (81%), Gaps = 1/81 (1%)

Query: 1   KQPSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQE 60
           K+PS  +VNQL+   EKYTLANH+FWGLWGLIS+YVNKIDF+YKEYARQRFQQYW++K  
Sbjct: 281 KKPSNAKVNQLMTAVEKYTLANHLFWGLWGLISSYVNKIDFDYKEYARQRFQQYWLRKPT 340

Query: 61  LLSSSTI-RQKINVNGHVSIS 80
           LL SSTI  Q   VNG + ++
Sbjct: 341 LLDSSTIVAQTETVNGSLPLA 361




Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443479|ref|XP_003592017.1| Choline/ethanolamine kinase [Medicago truncatula] gi|357443523|ref|XP_003592039.1| Choline/ethanolamine kinase [Medicago truncatula] gi|355481065|gb|AES62268.1| Choline/ethanolamine kinase [Medicago truncatula] gi|355481087|gb|AES62290.1| Choline/ethanolamine kinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224066603|ref|XP_002302158.1| predicted protein [Populus trichocarpa] gi|222843884|gb|EEE81431.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351724363|ref|NP_001236799.1| GmCK1p [Glycine max] gi|1438879|gb|AAC49374.1| GmCK1p [Glycine max] Back     alignment and taxonomy information
>gi|363808234|ref|NP_001241979.1| uncharacterized protein LOC100799515 [Glycine max] gi|255645201|gb|ACU23098.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255566742|ref|XP_002524355.1| choline/ethanolamine kinase, putative [Ricinus communis] gi|223536446|gb|EEF38095.1| choline/ethanolamine kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|351726586|ref|NP_001235340.1| GmCK2p [Glycine max] gi|1438881|gb|AAC49375.1| GmCK2p [Glycine max] Back     alignment and taxonomy information
>gi|388514709|gb|AFK45416.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|225470840|ref|XP_002265759.1| PREDICTED: choline/ethanolamine kinase [Vitis vinifera] gi|296083138|emb|CBI22774.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297846390|ref|XP_002891076.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297336918|gb|EFH67335.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query87
TAIR|locus:2118450346 AT4G09760 "AT4G09760" [Arabido 0.724 0.182 0.634 1e-20
TAIR|locus:2019612350 AT1G74320 "AT1G74320" [Arabido 0.747 0.185 0.615 2.1e-20
TAIR|locus:2824546346 CK1 "choline kinase 1" [Arabid 0.678 0.170 0.694 5.7e-20
UNIPROTKB|I3L6J8323 CHKB "Uncharacterized protein" 0.712 0.191 0.428 1.6e-10
UNIPROTKB|E2RQC5271 CHKB "Uncharacterized protein" 0.609 0.195 0.471 5.5e-10
ZFIN|ZDB-GENE-030328-21360 etnk1 "ethanolamine kinase 1" 0.712 0.172 0.467 5.7e-10
DICTYBASE|DDB_G0275265447 etnkB "ethanolamine kinase B" 0.712 0.138 0.403 6.8e-10
UNIPROTKB|H3BT5660 CHKB-CPT1B "Protein CHKB-CPT1B 0.609 0.883 0.433 1.1e-09
UNIPROTKB|G3X782395 CHKB "Uncharacterized protein" 0.712 0.156 0.412 1.1e-09
DICTYBASE|DDB_G0274955349 etnkA "ethanolamine kinase A" 0.712 0.177 0.322 1.5e-09
TAIR|locus:2118450 AT4G09760 "AT4G09760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 40/63 (63%), Positives = 55/63 (87%)

Query:     1 KQPSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQE 60
             ++  E ++ QL+DD EKYTLA+H+FWGLWG+IS YVNKI+F+Y EY+RQRF+QYW++K +
Sbjct:   280 EEAREEDIEQLLDDIEKYTLASHLFWGLWGIISGYVNKIEFDYIEYSRQRFKQYWLRKPK 339

Query:    61 LLS 63
             LLS
Sbjct:   340 LLS 342




GO:0004103 "choline kinase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA
TAIR|locus:2019612 AT1G74320 "AT1G74320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2824546 CK1 "choline kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|I3L6J8 CHKB "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQC5 CHKB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030328-21 etnk1 "ethanolamine kinase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275265 etnkB "ethanolamine kinase B" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|H3BT56 CHKB-CPT1B "Protein CHKB-CPT1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3X782 CHKB "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274955 etnkA "ethanolamine kinase A" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query87
PLN02236344 PLN02236, PLN02236, choline kinase 2e-39
PLN02421330 PLN02421, PLN02421, phosphotransferase, alcohol gr 2e-09
PTZ00296442 PTZ00296, PTZ00296, choline kinase; Provisional 4e-09
cd05156302 cd05156, ChoK_euk, Choline Kinase (ChoK) in eukary 2e-05
>gnl|CDD|177880 PLN02236, PLN02236, choline kinase Back     alignment and domain information
 Score =  132 bits (334), Expect = 2e-39
 Identities = 45/64 (70%), Positives = 57/64 (89%)

Query: 1   KQPSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQE 60
           ++PS+ EV QL+DD EKYTLA+H+FWGLWG+IS +VNKIDF+Y EYARQRF+QYW++K E
Sbjct: 281 EEPSDEEVEQLLDDVEKYTLASHLFWGLWGIISGHVNKIDFDYMEYARQRFEQYWLRKPE 340

Query: 61  LLSS 64
           LL S
Sbjct: 341 LLGS 344


Length = 344

>gnl|CDD|215231 PLN02421, PLN02421, phosphotransferase, alcohol group as acceptor/kinase Back     alignment and domain information
>gnl|CDD|240350 PTZ00296, PTZ00296, choline kinase; Provisional Back     alignment and domain information
>gnl|CDD|240177 cd05156, ChoK_euk, Choline Kinase (ChoK) in eukaryotes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 87
PTZ00296442 choline kinase; Provisional 99.79
KOG4720391 consensus Ethanolamine kinase [Lipid transport and 99.78
PLN02236344 choline kinase 99.73
PLN02421330 phosphotransferase, alcohol group as acceptor/kina 99.7
KOG2686366 consensus Choline kinase [Cell wall/membrane/envel 99.62
PTZ00384383 choline kinase; Provisional 99.57
cd05156302 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The 98.42
COG0510269 ycfN Thiamine kinase and related kinases [Coenzyme 88.31
TIGR02721256 ycfN_thiK thiamine kinase. Members of this family 86.84
>PTZ00296 choline kinase; Provisional Back     alignment and domain information
Probab=99.79  E-value=2.8e-19  Score=141.40  Aligned_cols=67  Identities=30%  Similarity=0.706  Sum_probs=62.0

Q ss_pred             CCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh--hcCCcCCHHHHHHHHHHHHHHHHHhhhhcccccc
Q 041666            3 PSETEVNQLVDDAEKYTLANHIFWGLWGLISAY--VNKIDFNYKEYARQRFQQYWMKKQELLSSSTIRQ   69 (87)
Q Consensus         3 ~se~eV~~L~~eV~~f~l~shL~W~lWsliQa~--~s~i~FDy~~Ya~~Rl~~y~~~K~~l~~~~~~~~   69 (87)
                      +++++|++|+.||+.|+++||||||+||+||+.  .+.|+|||++||..|+..|++.|+.|++.+++..
T Consensus       371 ~~~~~v~~l~~ev~~f~l~shl~W~lWaiiqa~~~~s~idFDy~~Ya~~R~~~Y~~~k~~~~~~~~~~~  439 (442)
T PTZ00296        371 PNPKIIDQILEAVEVQALGAHLLWGFWSIIRGYQTKSYNEFDFFLYAKERFKMYDEQKEYLISNNIIKT  439 (442)
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            456789999999999999999999999999997  4679999999999999999999999999988763



>KOG4720 consensus Ethanolamine kinase [Lipid transport and metabolism] Back     alignment and domain information
>PLN02236 choline kinase Back     alignment and domain information
>PLN02421 phosphotransferase, alcohol group as acceptor/kinase Back     alignment and domain information
>KOG2686 consensus Choline kinase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PTZ00384 choline kinase; Provisional Back     alignment and domain information
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes Back     alignment and domain information
>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR02721 ycfN_thiK thiamine kinase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query87
3lq3_A401 Crystal Structure Of Human Choline Kinase Beta In C 2e-09
3feg_A379 Crystal Structure Of Human Choline Kinase Beta In C 2e-09
2ig7_A401 Crystal Structure Of Human Choline Kinase B Length 4e-09
2i7q_A402 Crystal Structure Of Human Choline Kinase A Length 7e-08
3f2r_A401 Crystal Structure Of Human Choline Kinase Alpha In 7e-08
2cko_A390 Crystal Structure Of Human Choline Kinase Alpha 2 L 7e-08
3zm9_A383 The Mechanism Of Allosteric Coupling In Choline Kin 9e-08
3mes_A424 Crystal Structure Of Choline Kinase From Cryptospor 2e-07
1nw1_A429 Crystal Structure Of Choline Kinase Length = 429 1e-05
3c5i_A369 Crystal Structure Of Plasmodium Knowlesi Choline Ki 3e-05
2qg7_A458 Plasmodium Vivax Ethanolamine Kinase Pv091845 Lengt 9e-05
3fi8_A362 Crystal Structure Of Choline Kinase From Plasmodium 6e-04
>pdb|3LQ3|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex With Phosphorylated Hemicholinium-3 And Adenosine Nucleotide Length = 401 Back     alignment and structure

Iteration: 1

Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 37/53 (69%) Query: 11 LVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLS 63 L+ + +Y LA+H FWGLW ++ A ++ I+F Y +YA+ RFQ Y+ +K +L S Sbjct: 344 LLVEVSRYALASHFFWGLWSILQASMSTIEFGYLDYAQSRFQFYFQQKGQLTS 396
>pdb|3FEG|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex With Phosphorylated Hemicholinium-3 And Adenosine Nucleotide Length = 379 Back     alignment and structure
>pdb|2IG7|A Chain A, Crystal Structure Of Human Choline Kinase B Length = 401 Back     alignment and structure
>pdb|2I7Q|A Chain A, Crystal Structure Of Human Choline Kinase A Length = 402 Back     alignment and structure
>pdb|3F2R|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex With Hemicholinium-3 Length = 401 Back     alignment and structure
>pdb|2CKO|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2 Length = 390 Back     alignment and structure
>pdb|3ZM9|A Chain A, The Mechanism Of Allosteric Coupling In Choline Kinase A1 Revealed By A Rationally Designed Inhibitor Length = 383 Back     alignment and structure
>pdb|3MES|A Chain A, Crystal Structure Of Choline Kinase From Cryptosporidium Parvum Iowa Ii, Cgd3_2030 Length = 424 Back     alignment and structure
>pdb|1NW1|A Chain A, Crystal Structure Of Choline Kinase Length = 429 Back     alignment and structure
>pdb|3C5I|A Chain A, Crystal Structure Of Plasmodium Knowlesi Choline Kinase, Pkh_134520 Length = 369 Back     alignment and structure
>pdb|2QG7|A Chain A, Plasmodium Vivax Ethanolamine Kinase Pv091845 Length = 458 Back     alignment and structure
>pdb|3FI8|A Chain A, Crystal Structure Of Choline Kinase From Plasmodium Falciparum, Pf14_0020 Length = 362 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query87
1nw1_A429 Choline kinase (49.2 KD); phospholipid synthesis, 4e-20
3feg_A379 Choline/ethanolamine kinase; non-protein kinase, c 2e-16
3mes_A424 Choline kinase; malaria, structural genomics, stru 2e-15
3c5i_A369 Choline kinase; choline, kinase, malaria, transfer 4e-15
3f2s_A401 CK, chetk-alpha, choline kinase alpha; non-protein 4e-15
2qg7_A458 Ethanolamine kinase PV091845; malaria, SGC, struct 5e-13
3dxq_A301 Choline/ethanolamine kinase family protein; NP_106 8e-09
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8 Length = 429 Back     alignment and structure
 Score = 81.6 bits (200), Expect = 4e-20
 Identities = 17/67 (25%), Positives = 33/67 (49%)

Query: 2   QPSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQEL 61
                +   LV +   +   +H FWG+WGL+   ++ + F + +Y R R   Y+  KQ L
Sbjct: 363 NELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRDRLSLYFKHKQLL 422

Query: 62  LSSSTIR 68
            + ++ +
Sbjct: 423 KNLASHQ 429


>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A* Length = 379 Back     alignment and structure
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum} Length = 424 Back     alignment and structure
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A* Length = 369 Back     alignment and structure
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax} Length = 458 Back     alignment and structure
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti} Length = 301 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query87
3g15_A401 CK, chetk-alpha, choline kinase alpha; non-protein 99.78
3feg_A379 Choline/ethanolamine kinase; non-protein kinase, c 99.74
3mes_A424 Choline kinase; malaria, structural genomics, stru 99.73
3f2s_A401 CK, chetk-alpha, choline kinase alpha; non-protein 99.73
3c5i_A369 Choline kinase; choline, kinase, malaria, transfer 99.63
1nw1_A429 Choline kinase (49.2 KD); phospholipid synthesis, 99.57
2qg7_A458 Ethanolamine kinase PV091845; malaria, SGC, struct 99.4
3dxq_A301 Choline/ethanolamine kinase family protein; NP_106 99.05
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A* Back     alignment and structure
Probab=99.78  E-value=2.5e-19  Score=135.70  Aligned_cols=57  Identities=32%  Similarity=0.849  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHHHHhh
Q 041666            5 ETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQEL   61 (87)
Q Consensus         5 e~eV~~L~~eV~~f~l~shL~W~lWsliQa~~s~i~FDy~~Ya~~Rl~~y~~~K~~l   61 (87)
                      +.++++|+.||+.|++++||+|++||+||+..|.|+|||++||..||++|++.|++|
T Consensus       343 ~~~~~~l~~ev~~~~~~~~l~W~~Waiiq~~~s~idFdy~~Ya~~Rl~~Y~~~k~~l  399 (401)
T 3g15_A          343 SIIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYAQARFDAYFHQKRKL  399 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHc
Confidence            457899999999999999999999999999999999999999999999999999987



>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A* Back     alignment and structure
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum} Back     alignment and structure
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A* Back     alignment and structure
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8 Back     alignment and structure
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax} Back     alignment and structure
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 87
d1nw1a_395 d.144.1.8 (A:) Choline kinase {Caenorhabditis eleg 3e-20
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]} Length = 395 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]
 Score = 80.3 bits (197), Expect = 3e-20
 Identities = 17/63 (26%), Positives = 31/63 (49%)

Query: 1   KQPSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQE 60
           +     +   LV +   +   +H FWG+WGL+   ++ + F + +Y R R   Y+  KQ 
Sbjct: 331 ENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRDRLSLYFKHKQL 390

Query: 61  LLS 63
           L +
Sbjct: 391 LKN 393


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query87
d1nw1a_395 Choline kinase {Caenorhabditis elegans [TaxId: 623 99.78
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.78  E-value=1.6e-19  Score=134.10  Aligned_cols=62  Identities=27%  Similarity=0.669  Sum_probs=58.6

Q ss_pred             CCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHHHHhhhhc
Q 041666            3 PSETEVNQLVDDAEKYTLANHIFWGLWGLISAYVNKIDFNYKEYARQRFQQYWMKKQELLSS   64 (87)
Q Consensus         3 ~se~eV~~L~~eV~~f~l~shL~W~lWsliQa~~s~i~FDy~~Ya~~Rl~~y~~~K~~l~~~   64 (87)
                      +...+|+.|+.||+.|+++|||+||+||+||+..++++|||++||..||++|++.|++|.+.
T Consensus       333 ~~~~~~~~l~~~v~~~~~~s~l~W~lW~~iq~~~~~~~fDy~~Y~~~Rl~~y~~~k~~l~~~  394 (395)
T d1nw1a_         333 ELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRDRLSLYFKHKQLLKNL  394 (395)
T ss_dssp             GHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHTHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            45678999999999999999999999999999999999999999999999999999999763