Citrus Sinensis ID: 041680

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

MFAWLLCLILVSEAWPVKCQYQQQQLIILAGQSNMAGRGGVTNDTRTNKLTWDGIVPPQCQPNPSILRLTAKLKWVLAHEPLHADIDVNKTNGVGPGLPFANAVLTKVPNFGVIGLVPCAIGGTNISQWRKGSSLYEQMIQRAQVALRGGGTIRAVLWYQGESDTVNLEDAKLYKERSDMFFTDLRSDLQSPLLPIIRVALASGEGPFIEIVRKAQLSSDLPNVRCVDAMGLPLEPDGLHLTTPAQGSTLNSWSNEALRVNLSLLVFRILEGSCRISKQAVSSLPHCFMT

cHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHHHcccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHHHHccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccEEcccccEEcccccccc

cHHHHHHHHHHcccccccccccccEEEEEEEcccccccccEccccccccccccccccccccccccEEEEcccccEEEccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEcccccccHHHHcccccHHHHHHHHHHHHHHcccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHcccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccEEEEccccccc

MFAWLLCLILVseawpvkcQYQQQQLIILAgqsnmagrggvtndtrtnkltwdgivppqcqpnpsilRLTAKLKWVLaheplhadidvnktngvgpglpfANAVltkvpnfgviglvpcaiggtnisqwrkgSSLYEQMIQRAQVALRGGGTIRAVLWyqgesdtvnledaklykeRSDMFFTDLrsdlqspllPIIRVALASGEGPFIEIVRKAqlssdlpnvrcvdamglplepdglhlttpaqgstlnsWSNEALRVNLSLLVFRILEGScriskqavsslphcfmt

MFAWLLCLILVSEAWPVKCQYQQQQLIILAGQSNMAGRGGVTNDTRTNKLTWDGIVPPQCQPNPSILRLTAKLKWVLAHEPLHADIDVNKTNGVGPGLPFANAVLTKVPNFGVIGLVPCAIGGTNISQWRKGSSLYEQMIQRAQVALRGGGTIRAVLwyqgesdtvnlEDAKLYKERSDMFFTDLRSDLQSPLLPIIRVALASGEGPFIEIVRkaqlssdlpNVRCVDAMGLPLEPDGLHLTTPAQGSTLNSWSNEALRVNLSLLVFRILEGSCriskqavsslphcfmt

*FAWLLCLILVSEAWPVKCQYQQQQLIILAGQSNMAGRGGVTNDTRTNKLTWDGIVPPQCQPNPSILRLTAKLKWVLAHEPLHADIDVNKTNGVGPGLPFANAVLTKVPNFGVIGLVPCAIGGTNISQWRKGSSLYEQMIQRAQVALRGGGTIRAVLWYQGESDTVNLEDAKLYKERSDMFFTDLRSDLQSPLLPIIRVALASGEGPFIEIVRKAQLSSDLPNVRCVDAMGLPLEPDGLHLTTPAQGSTLNSWSNEALRVNLSLLVFRILEGSCRISKQAV*********

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SSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		290	2.2.26 [Sep-21-2011]
Q8L9J9		260	Probable carbohydrate est	no	no	0.765	0.853	0.575	3e-69

>sp\|Q8L9J9\|CAES_ARATH Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2	Back alignment and function desciption

 Score =  261 bits (668), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 129/224 (57%), Positives = 160/224 (71%), Gaps = 2/224 (0%)

Query: 24  QQLIILAGQSNMAGRGGVTNDTRTNKLTWDGIVPPQCQPNPSILRLTAKLKWVLAHEPLH 83
            Q+ IL+GQSNMAGRGGV  D   N+  WD I+PP+C PN SILRL+A L+W  AHEPLH
Sbjct: 22  NQIFILSGQSNMAGRGGVFKDHHNNRWVWDKILPPECAPNSSILRLSADLRWEEAHEPLH 81

Query: 84  ADIDVNKTNGVGPGLPFANAVLTKVP-NFGVIGLVPCAIGGTNISQWRKGSSLYEQMIQR 142
            DID  K  GVGPG+ FANAV  ++  +  VIGLVPCA GGT I +W +GS LYE+M++R
Sbjct: 82  VDIDTGKVCGVGPGMAFANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKR 141

Query: 143 AQVALRGGGTIRAVLWYQGESDTVNLEDAKLYKERSDMFFTDLRSDLQSPLLPIIRVALA 202
            + + + GG I+AVLWYQGESD +++ DA+ Y    D    +LR DL  P LPII+VA+A
Sbjct: 142 TEESRKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIA 201

Query: 203 SGEGPFIEIVRKAQLSSDLPNVRCVDAMGLPLEPDGLHLTTPAQ 246
           SG G +I+ VR+AQL   L NV CVDA GLPL+ D LHLTT AQ
Sbjct: 202 SG-GGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQ 244

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		290
356510499		305	PREDICTED: probable carbohydrate esteras	0.951	0.904	0.608	7e-91
224137652		297	predicted protein [Populus trichocarpa]	0.851	0.831	0.674	1e-90
255538182		300	conserved hypothetical protein [Ricinus	0.848	0.82	0.654	2e-90
356518106		298	PREDICTED: probable carbohydrate esteras	0.793	0.771	0.676	6e-87
145339433		297	uncharacterized protein [Arabidopsis tha	0.751	0.734	0.668	8e-85
297820028		296	hypothetical protein ARALYDRAFT_485676 [	0.751	0.736	0.662	1e-83
225458723		270	PREDICTED: probable carbohydrate esteras	0.755	0.811	0.665	8e-82
357465631		267	hypothetical protein MTR_3g102390 [Medic	0.731	0.794	0.665	2e-79
449508201		276	PREDICTED: probable carbohydrate esteras	0.831	0.873	0.593	9e-78
449447271		300	PREDICTED: probable carbohydrate esteras	0.831	0.803	0.593	1e-77

>gi\|356510499\|ref\|XP_003523975.1\| PREDICTED: probable carbohydrate esterase At4g34215-like [Glycine max]	Back alignment and taxonomy information

 Score =  339 bits (870), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 171/281 (60%), Positives = 208/281 (74%), Gaps = 5/281 (1%)

Query: 5   LLCLILVSEAWPVKCQ-YQQQQLIILAGQSNMAGRGGVTNDTRTNKLTWDGIVPPQCQPN 63
           LL L+ + ++W VK Q    + + ILAGQSNMAGRGGV N+T T   TWDG+VPPQ +PN
Sbjct: 4   LLLLVFLIQSWAVKAQQVYDRNIFILAGQSNMAGRGGVLNNTGTGIATWDGVVPPQSRPN 63

Query: 64  PSILRLTAKLKWVLAHEPLHADIDVNKTNGVGPGLPFANAVLTKVPNFGVIGLVPCAIGG 123
           PS+L+L A L WV A EPL ADID  KTNGVGPG+ FAN+VL K P+FG+IGLVPCAIGG
Sbjct: 64  PSVLKLDAHLTWVEAREPLDADIDSRKTNGVGPGMAFANSVLEKHPDFGLIGLVPCAIGG 123

Query: 124 TNISQWRKGSSLYEQMIQRAQVALRGGGTIRAVLWYQGESDTVNLEDAKLYKERSDMFFT 183
           +NIS+W +G  LY QMI+RA+ +LR GGTIRA+LWYQGE+DTVNL DA+ Y+ R   FF 
Sbjct: 124 SNISEWERGKELYFQMIKRAKASLRDGGTIRALLWYQGETDTVNLHDAQSYQRRVHKFFL 183

Query: 184 DLRSDLQSPLLPIIRVALASGEGPFIEIVRKAQLSSDLPNVRCVDAMGLPLEPDGLHLTT 243
           D+R DLQSPLLPII+VALASG GP IEIVR+AQL  DL N+R VDA GLPL+PDGLHL+T
Sbjct: 184 DVRDDLQSPLLPIIQVALASGSGPHIEIVRQAQLGIDLLNLRTVDAHGLPLQPDGLHLST 243

Query: 244 PAQGSTLNSWSNEALRV----NLSLLVFRILEGSCRISKQA 280
           PAQ       +N  L+     N++  V  IL  + R+   A
Sbjct: 244 PAQAHLGQMMANAFLQFVPSSNVNYKVSPILNEAIRLYNYA 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224137652\|ref\|XP_002327179.1\| predicted protein [Populus trichocarpa] gi\|222835494\|gb\|EEE73929.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255538182\|ref\|XP_002510156.1\| conserved hypothetical protein [Ricinus communis] gi\|223550857\|gb\|EEF52343.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356518106\|ref\|XP_003527723.1\| PREDICTED: probable carbohydrate esterase At4g34215-like [Glycine max]	Back alignment and taxonomy information

>gi\|145339433\|ref\|NP_190869.3\| uncharacterized protein [Arabidopsis thaliana] gi\|110738676\|dbj\|BAF01263.1\| hypothetical protein [Arabidopsis thaliana] gi\|332645504\|gb\|AEE79025.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297820028\|ref\|XP_002877897.1\| hypothetical protein ARALYDRAFT_485676 [Arabidopsis lyrata subsp. lyrata] gi\|297323735\|gb\|EFH54156.1\| hypothetical protein ARALYDRAFT_485676 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|225458723\|ref\|XP_002283036.1\| PREDICTED: probable carbohydrate esterase At4g34215-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357465631\|ref\|XP_003603100.1\| hypothetical protein MTR_3g102390 [Medicago truncatula] gi\|355492148\|gb\|AES73351.1\| hypothetical protein MTR_3g102390 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449508201\|ref\|XP_004163248.1\| PREDICTED: probable carbohydrate esterase At4g34215-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449447271\|ref\|XP_004141392.1\| PREDICTED: probable carbohydrate esterase At4g34215-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		290
TAIR\|locus:2085241		297	AT3G53010 "AT3G53010" [Arabido	0.751	0.734	0.668	4.7e-80
TAIR\|locus:505006557		260	AT4G34215 [Arabidopsis thalian	0.762	0.85	0.578	1.4e-64

TAIR\|locus:2085241 AT3G53010 "AT3G53010" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 149/223 (66%), Positives = 183/223 (82%)

Query:    26 LIILAGQSNMAGRGGVTNDTRTNKLTWDGIVPPQCQPNPSILRLTAKLKWVLAHEPLHAD 85
             + ILAGQSNMAGRGGV NDT TN   WDG++PP+C+ NPSILRLT+KL+W  A EPLH D
Sbjct:    31 IFILAGQSNMAGRGGVYNDTATNTTVWDGVIPPECRSNPSILRLTSKLEWKEAKEPLHVD 90

Query:    86 IDVNKTNGVGPGLPFANAVLTKVPNFGVIGLVPCAIGGTNISQWRKGSSLYEQMIQRAQV 145
             ID+NKTNGVGPG+PFAN V+ +   FG +GLVPC+IGGT +SQW+KG  LYE+ ++RA+ 
Sbjct:    91 IDINKTNGVGPGMPFANRVVNR---FGQVGLVPCSIGGTKLSQWQKGEFLYEETVKRAKA 147

Query:   146 ALR--GGGTIRAVLWYQGESDTVNLEDAKLYKERSDMFFTDLRSDLQSPLLPIIRVALAS 203
             A+   GGG+ RAVLWYQGESDTV++ DA +YK+R   FF+DLR+DLQ P LPII+VALA+
Sbjct:   148 AMASGGGGSYRAVLWYQGESDTVDMVDASVYKKRLVKFFSDLRNDLQHPNLPIIQVALAT 207

Query:   204 GEGPFIEIVRKAQLSSDLPNVRCVDAMGLPLEPDGLHLTTPAQ 246
             G GP+++ VRKAQL +DL NV CVDA GLPLEPDGLHLTT +Q
Sbjct:   208 GAGPYLDAVRKAQLKTDLENVYCVDARGLPLEPDGLHLTTSSQ 250

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:505006557 AT4G34215 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		290
pfam03629		257	pfam03629, DUF303, Domain of unknown function (DUF	4e-30

>gnl\|CDD\|217645 pfam03629, DUF303, Domain of unknown function (DUF303)	Back alignment and domain information

 Score =  113 bits (285), Expect = 4e-30
 Identities = 65/265 (24%), Positives = 86/265 (32%), Gaps = 76/265 (28%)

Query: 25  QLIILAGQSNMA----GRGGVTNDTRTNKLTWDGIVPPQCQPNPSILRLTAKLKWVLAHE 80
           ++ + +GQSNM     GRG    +                 PNP I   T   K +    
Sbjct: 2   EVWLCSGQSNMEWPLRGRGKGEPEIAD-------------APNPRIRLFTVP-KEISLEP 47

Query: 81  PLHAD------IDVNKTNGVGPGLPFANAVL--TKVPNFGVIGLVPCAIGGTNISQWRKG 132
           P                +    G  FA  +     VP    IGL+PCA GGT I  W  G
Sbjct: 48  PDDVGGKWKEATPETAAHFSAVGYFFARKLQQELNVP----IGLIPCAWGGTPIEAWMPG 103

Query: 133 SS----------------------------LYEQMIQRAQVALRGGGTIRAVLWYQGESD 164
            +                            LY  MI   +        I+ V+WYQGES+
Sbjct: 104 EALGAFPDLKRKLQKLDAALAYDPGKGPGTLYNAMIAPLK-----AYAIKGVIWYQGESN 158

Query: 165 TVNLEDAKLYKERSDMFFTDLRSDLQSPLLPIIRVALASGEGPFIE-------IVRKAQ- 216
                    Y +       D R D   P LP   V LA       E        +R+AQ 
Sbjct: 159 A---GRGNEYAKLLKALIEDWRKDWGQPDLPFYFVQLAPFLKKKEEPDDSGWAELREAQA 215

Query: 217 -LSSDLPNVRCVDAMGLPLEPDGLH 240
               +LPN   V  + L  + D +H
Sbjct: 216 KALKELPNTGMVVTIDLG-DEDDIH 239

Distribution of this domain seems limited to prokaryotes and viruses. Length = 257

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		290
PF03629		255	DUF303: Domain of unknown function (DUF303) ; Inte	100.0
cd01836		191	FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, Fee	98.61
cd01832		185	SGNH_hydrolase_like_1 Members of the SGNH-hydrolas	98.52
cd01833		157	XynB_like SGNH_hydrolase subfamily, similar to Rum	98.5
cd04502		171	SGNH_hydrolase_like_7 Members of the SGNH-hydrolas	98.49
cd01839		208	SGNH_arylesterase_like SGNH_hydrolase subfamily, s	98.46
cd01827		188	sialate_O-acetylesterase_like1 sialate O-acetylest	98.46
cd01834		191	SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SG	98.43
cd01841		174	NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfa	98.29
cd01822		177	Lysophospholipase_L1_like Lysophospholipase L1-lik	98.28
cd01828		169	sialate_O-acetylesterase_like2 sialate_O-acetylest	98.26
cd01821		198	Rhamnogalacturan_acetylesterase_like Rhamnogalactu	98.25
cd01825		189	SGNH_hydrolase_peri1 SGNH_peri1; putative periplas	98.23
cd04501		183	SGNH_hydrolase_like_4 Members of the SGNH-hydrolas	98.21
cd01838		199	Isoamyl_acetate_hydrolase_like Isoamyl-acetate hyd	98.18
cd01831		169	Endoglucanase_E_like Endoglucanase E-like members	98.17
cd01820		214	PAF_acetylesterase_like PAF_acetylhydrolase (PAF-A	98.16
cd01844		177	SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SG	98.15
cd00229		187	SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase,	98.13
PRK10528		191	multifunctional acyl-CoA thioesterase I and protea	98.11
cd01830		204	XynE_like SGNH_hydrolase subfamily, similar to the	98.0
cd01829		200	SGNH_hydrolase_peri2 SGNH_peri2; putative periplas	97.95
cd04506		204	SGNH_hydrolase_YpmR_like Members of the SGNH-hydro	97.66
cd01835		193	SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SG	97.62
cd01840		150	SGNH_hydrolase_yrhL_like yrhL-like subfamily of SG	97.36
PF14606		178	Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase fami	97.32
cd01823		259	SEST_like SEST_like. A family of secreted SGNH-hyd	96.94
PF13472		179	Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase fami	96.72
COG2755		216	TesA Lysophospholipase L1 and related esterases [A	96.71
COG2845		354	Uncharacterized protein conserved in bacteria [Fun	93.35
cd01824		288	Phospholipase_B_like Phospholipase-B_like. This su	93.09
cd01826		305	acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase l	91.25
cd01842		183	SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG	90.89
KOG3035		245	consensus Isoamyl acetate-hydrolyzing esterase [Li	81.16

>PF03629 DUF303: Domain of unknown function (DUF303) ; InterPro: IPR005181 This domain is associated with proteins from viruses, bacteria and eukaryotes	Back alignment and domain information

Probab=100.00  E-value=6.6e-47  Score=343.26  Aligned_cols=203  Identities=33%  Similarity=0.510  Sum_probs=153.5

Q ss_pred             cEEEEEecccccC----CCCCCCCCcccccccccCCCCCCCCCCCceeeec------------c-CCceEEccCCCCcCC
Q 041680           24 QQLIILAGQSNMA----GRGGVTNDTRTNKLTWDGIVPPQCQPNPSILRLT------------A-KLKWVLAHEPLHADI   86 (290)
Q Consensus        24 ~~V~llaGQSNM~----G~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~------------~-~g~W~~a~~p~~~~~   86 (290)
                      ||||||+|||||+    |.+..+...           .  ..++|+|+.+.            . .+.|.++.++.... 
T Consensus         1 GdV~l~aGQSNm~~~~~g~~~~~~~~-----------~--~~~~~~i~~~~~~~~~~~~p~~~~~~~~w~~~~~~~~~~-   66 (255)
T PF03629_consen    1 GDVFLCAGQSNMEFPLSGRGNGDPEV-----------A--DAPDPNIRFFNVPKNASEDPQKDPKGGTWKPANPDSPGG-   66 (255)
T ss_dssp             -EEEEEEESHHHH----S-BTCCCTT-----------T--TEEETTEEEEGGS--TTEECESTTTSTEEEEEES--SST-
T ss_pred             CeEEEEeCCCccccchhcccCccccc-----------c--cCCCCCEEEEeeccccccCCccccccCccccccccccCC-
Confidence            7999999999999    887644320           0  01345555541            1 28888888766543 


Q ss_pred             CCCCCCCccchHHHHHHHHHhCCCCCcEEEEEcCcCCeeecccCCCC------------------------chHHHHHHH
Q 041680           87 DVNKTNGVGPGLPFANAVLTKVPNFGVIGLVPCAIGGTNISQWRKGS------------------------SLYEQMIQR  142 (290)
Q Consensus        87 ~~~~~~g~g~~~~Fa~~L~~~~~~~~pVgiI~~a~GGtsI~~W~~~~------------------------~lY~~mi~~  142 (290)
                            .+|++++||++|.+++  ++|||||+||+|||+|+.|+++.                        .+|+.||++
T Consensus        67 ------~~~~~~~F~~~l~~~~--~~pVglI~~a~GGt~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~i~~  138 (255)
T PF03629_consen   67 ------FSGPGYYFGKELQKAL--GVPVGLINCAWGGTSIEAWMPGESLEWDPELKAWLYKTYAQNKGYPGALYNAMIAP  138 (255)
T ss_dssp             ------TB-THHHHHHHHHHCC--TCEEEEEEEE-TT-BGGGGSTTSTTEE-TT--B-STT---------SHHHHHHHHH
T ss_pred             ------CCcHHHHHHHHHhhcC--CCcEEEEecccCCeehhhcCCcccccccccccccccccccccchhhHHHHHHHHHH
Confidence                  3679999999999999  89999999999999999999876                        789999999


Q ss_pred             HHHHhhcCCeeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCCC---------CChHHHH
Q 041680          143 AQVALRGGGTIRAVLWYQGESDTVNLEDAKLYKERSDMFFTDLRSDLQSPLLPIIRVALASGEG---------PFIEIVR  213 (290)
Q Consensus       143 ~~~al~~g~~i~gilW~QGEsDa~~~~~~~~Y~~~l~~LI~~~R~d~~~~~lPfv~~ql~~~~~---------~~~~~vr  213 (290)
                      ++     ++.++||||||||+|+ +.   ..|.++|+.||++||++|+.+++|||++|++++..         ..|+.||
T Consensus       139 ~~-----~~~i~gvlW~QGEsD~-~~---~~Y~~~l~~li~~~R~~~~~~~lPf~~~ql~~~~~~~~~~~~~~~~~~~vr  209 (255)
T PF03629_consen  139 LK-----AYGIKGVLWYQGESDA-NA---EAYRELLKALIEDWRADWGDPDLPFVIGQLSPYNGTNNEPAGINEGWAEVR  209 (255)
T ss_dssp             HH-----HHEEEEEEEE--GGGS-SC---TCHHHHHHHHHHHHHHHTT-TTS-EEEEE-SCCCTTCGHHCCT-TTHHHHH
T ss_pred             Hh-----ccceEEEEEeCCCCCC-CH---HHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcccCCCCcccccccHHHHH
Confidence            98     3489999999999999 42   38999999999999999999999999999998632         3578999


Q ss_pred             HHHhhC--CCCCeEEEecCCCCCCCCCCCCCChhhHHHHHHHHHHHHHh
Q 041680          214 KAQLSS--DLPNVRCVDAMGLPLEPDGLHLTTPAQGSTLNSWSNEALRV  260 (290)
Q Consensus       214 ~aQ~~~--~~pn~~~v~t~~l~~~~D~iH~~~~g~~~lG~r~A~a~l~~  260 (290)
                      +||+++  ++||+.+|++.|++ ..|++|+  ++++++|+|||.+|+++
T Consensus       210 ~aQ~~~~~~~~~~~~v~t~d~~-~~~~i~~--~~~~~~G~R~a~~al~~  255 (255)
T PF03629_consen  210 EAQRRVAEEDPNTGMVSTSDLG-DPDDIHP--AGKRELGERLAEAALRK  255 (255)
T ss_dssp             HHHHHHHHHSTTEEEEE-TT-B--TTSS-H--HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHhhCCCEEEEEccCCC-CCCCcCH--HHHHHHHHHHHHHhhhC
Confidence            999987  79999999999975 4555554  55599999999999975

In the latter two taxonomic groups some of the proteins are annotated as either sialic acid-specific 9-O-acetylesterase (3.1.1.53 from EC) or acetylxylan esterase related enzyme. The function of this domain is unknown.; PDB: 3PT5_A 2APJ_C 1ZMB_D.

>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	Back alignment and domain information

>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	Back alignment and domain information

>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB	Back alignment and domain information

>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	Back alignment and domain information

>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A	Back alignment and domain information

>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases	Back alignment and domain information

>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily	Back alignment and domain information

>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases	Back alignment and domain information

>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases	Back alignment and domain information

>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases	Back alignment and domain information

>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases	Back alignment and domain information

>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases	Back alignment and domain information

>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	Back alignment and domain information

>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins	Back alignment and domain information

>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans	Back alignment and domain information

>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases	Back alignment and domain information

>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily	Back alignment and domain information

>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases	Back alignment and domain information

>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional	Back alignment and domain information

>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE	Back alignment and domain information

>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases	Back alignment and domain information

>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	Back alignment and domain information

>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily	Back alignment and domain information

>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases	Back alignment and domain information

>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B	Back alignment and domain information

>cd01823 SEST_like SEST_like	Back alignment and domain information

>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A	Back alignment and domain information

>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]	Back alignment and domain information

>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>cd01824 Phospholipase_B_like Phospholipase-B_like	Back alignment and domain information

>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family	Back alignment and domain information

>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily	Back alignment and domain information

>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		290
2apj_A		260	X-Ray Structure Of Protein From Arabidopsis Thalian		8e-70
1zmb_A		290	Crystal Structure Of The Putative Acetylxylan Ester		3e-15

>pdb|2APJ|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana At4g34215 At 1.6 Angstrom Resolution Length = 260

Back alignment and structure

Iteration: 1

Score = 260 bits (664), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 128/224 (57%), Positives = 159/224 (70%), Gaps = 2/224 (0%) Query: 24 QQLIILAGQSNMAGRGGVTNDTRTNKLTWDGIVPPQCQPNPSILRLTAKLKWVLAHEPLH 83 Q+ IL+GQ NMAGRGGV D N+ WD I+PP+C PN SILRL+A L+W AHEPLH Sbjct: 22 NQIFILSGQXNMAGRGGVFKDHHNNRWVWDKILPPECAPNSSILRLSADLRWEEAHEPLH 81 Query: 84 ADIDVNKTNGVGPGLPFANAVLTKVP-NFGVIGLVPCAIGGTNISQWRKGSSLYEQMIQR 142 DID K GVGPG+ FANAV ++ + VIGLVPCA GGT I +W +GS LYE+M++R Sbjct: 82 VDIDTGKVCGVGPGMAFANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKR 141 Query: 143 AQVALRGGGTIRAVLWYQGESDTVNLEDAKLYKERSDMFFTDLRSDLQSPLLPIIRVALA 202 + + + GG I+AVLWYQGESD +++ DA+ Y D +LR DL P LPII+VA+A Sbjct: 142 TEESRKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIA 201 Query: 203 SGEGPFIEIVRKAQLSSDLPNVRCVDAMGLPLEPDGLHLTTPAQ 246 SG G +I+ VR+AQL L NV CVDA GLPL+ D LHLTT AQ Sbjct: 202 SG-GGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQ 244

PyMOL of 2apj

>pdb|1ZMB|A Chain A, Crystal Structure Of The Putative Acetylxylan Esterase From Clostridium Acetobutylicum, Northeast Structural Genomics Target Car6 Length = 290

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		290
2apj_A		260	Putative esterase; AT4G34215, CAR esterase family	8e-70
1zmb_A		290	Acetylxylan esterase related enzyme; alpha-beta pr	3e-48
3pt5_A		337	NANS (YJHS), A 9-O-acetyl N-acetylneuraminic acid;	3e-35

>2apj_A Putative esterase; AT4G34215, CAR esterase family 6, structural genomics, protein structure initiative, CESG; HET: SEB; 1.60A {Arabidopsis thaliana} SCOP: c.23.10.7 Length = 260	Back alignment and structure

 Score =  215 bits (549), Expect = 8e-70
 Identities = 126/221 (57%), Positives = 155/221 (70%), Gaps = 2/221 (0%)

Query: 27  IILAGQSNMAGRGGVTNDTRTNKLTWDGIVPPQCQPNPSILRLTAKLKWVLAHEPLHADI 86
            IL+GQ NMAGRGGV  D   N+  WD I+PP+C PN SILRL+A L+W  AHEPLH DI
Sbjct: 25  FILSGQXNMAGRGGVFKDHHNNRWVWDKILPPECAPNSSILRLSADLRWEEAHEPLHVDI 84

Query: 87  DVNKTNGVGPGLPFANAVLTKVPNFGV-IGLVPCAIGGTNISQWRKGSSLYEQMIQRAQV 145
           D  K  GVGPG+ FANAV  ++      IGLVPCA GGT I +W +GS LYE+M++R + 
Sbjct: 85  DTGKVCGVGPGMAFANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKRTEE 144

Query: 146 ALRGGGTIRAVLWYQGESDTVNLEDAKLYKERSDMFFTDLRSDLQSPLLPIIRVALASGE 205
           + + GG I+AVLWYQGESD +++ DA+ Y    D    +LR DL  P LPII+VA+ASG 
Sbjct: 145 SRKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIASG- 203

Query: 206 GPFIEIVRKAQLSSDLPNVRCVDAMGLPLEPDGLHLTTPAQ 246
           G +I+ VR+AQL   L NV CVDA GLPL+ D LHLTT AQ
Sbjct: 204 GGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQ 244

PyMOL of 2apj

>1zmb_A Acetylxylan esterase related enzyme; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.61A {Clostridium acetobutylicum} SCOP: c.23.10.7 Length = 290	Back alignment and structure

>3pt5_A NANS (YJHS), A 9-O-acetyl N-acetylneuraminic acid; SGNH hydrolase, 9-O-acetyl N-acetylneuraminic acid esterase, structural genomics; 1.60A {Escherichia coli O157} Length = 337	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		290
2apj_A		260	Putative esterase; AT4G34215, CAR esterase family	100.0
1zmb_A		290	Acetylxylan esterase related enzyme; alpha-beta pr	100.0
3pt5_A		337	NANS (YJHS), A 9-O-acetyl N-acetylneuraminic acid;	100.0
3dci_A		232	Arylesterase; SGNH_hydrolase SUBF structural genom	98.48
2q0q_A		216	ARYL esterase; SGNH hydrolase, oligomeric enzyme,	98.44
3hp4_A		185	GDSL-esterase; psychrotrophic, monoethylphosphonat	98.35
1ivn_A		190	Thioesterase I; hydrolase, protease; 1.90A {Escher	98.29
4h08_A		200	Putative hydrolase; GDSL-like lipase/acylhydrolase	98.16
3mil_A		240	Isoamyl acetate-hydrolyzing esterase; SGNH-hydrola	98.11
1es9_A		232	PAF-AH, platelet-activating factor acetylhydrolase	98.05
3skv_A		385	SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydr	98.04
3p94_A		204	GDSL-like lipase; serine hydrolase, catalytic tria	97.91
1fxw_F		229	Alpha2, platelet-activating factor acetylhydrolase	97.9
3rjt_A		216	Lipolytic protein G-D-S-L family; PSI-biology, mid	97.78
1vjg_A		218	Putative lipase from the G-D-S-L family; structura	97.78
3dc7_A		232	Putative uncharacterized protein LP_3323; NESG LPR	97.72
1yzf_A		195	Lipase/acylhydrolase; structural GENO PSI, protein	97.72
2hsj_A		214	Putative platelet activating factor; structr genom	97.69
2vpt_A		215	Lipolytic enzyme; esterase, hydrolase; 1.40A {Clos	97.52
2w9x_A		366	AXE2A, CJCE2B, putative acetyl xylan esterase; car	97.48
3bzw_A		274	Putative lipase; protein structure initiative II,	97.47
2waa_A		347	Acetyl esterase, xylan esterase, putative, AXE2C;	97.42
2wao_A		341	Endoglucanase E; plant cell WALL degradation, carb	97.41
1k7c_A		233	Rhamnogalacturonan acetylesterase; N-linked glycos	97.35
4hf7_A		209	Putative acylhydrolase; PF13472 family, structural	97.33
2o14_A		375	Hypothetical protein YXIM; NESG, X-RAY, SR595, str	97.29
1esc_A		306	Esterase; 2.10A {Streptomyces scabiei} SCOP: c.23.	94.6
4i8i_A		271	Hypothetical protein; 5-stranded beta sheet flanke	90.67

>2apj_A Putative esterase; AT4G34215, CAR esterase family 6, structural genomics, protein structure initiative, CESG; HET: SEB; 1.60A {Arabidopsis thaliana} SCOP: c.23.10.7	Back alignment and structure

Probab=100.00  E-value=3.5e-60  Score=430.80  Aligned_cols=240  Identities=53%  Similarity=0.909  Sum_probs=208.7

Q ss_pred             ccCCCccEEEEEecccccCCCCCCCCCcccccccccCCCCCCCCCCCceeeeccCCceEEccCCCCc--CCCCCCCCCcc
Q 041680           18 KCQYQQQQLIILAGQSNMAGRGGVTNDTRTNKLTWDGIVPPQCQPNPSILRLTAKLKWVLAHEPLHA--DIDVNKTNGVG   95 (290)
Q Consensus        18 ~~~~~~~~V~llaGQSNM~G~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~g~W~~a~~p~~~--~~~~~~~~g~g   95 (290)
                      ++++.+++||||+|||||+|++......-.+-.+++..+|+++.++|+++.++.+++|.+++||++.  +++  +..|+|
T Consensus        16 ~~~~~~~~V~L~~GQSNM~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~g~W~~a~~p~~~~~~~s--~~~G~g   93 (260)
T 2apj_A           16 QSPIPPNQIFILSGQXNMAGRGGVFKDHHNNRWVWDKILPPECAPNSSILRLSADLRWEEAHEPLHVDIDTG--KVCGVG   93 (260)
T ss_dssp             -CCCCCSEEEEEEESHHHHCCBTEEECTTTCCEEECCCCCGGGCCCTTEEEECTTSCEEECCSSTTTTTSTT--SCCCBC
T ss_pred             ccCCCCCeEEEecCcHHhCCCccccccccccccchhhhhhhccCCCcceEEecCCCcEEECCccccccccCC--cccccc
Confidence            3578999999999999999998755210000113455677777889999999889999999999998  443  345789


Q ss_pred             chHHHHHHHHHhC-CCCCcEEEEEcCcCCeeecccCCCCchHHHHHHHHHHHhhcCCeeEEEEEeecCCCCCCCcCHHHH
Q 041680           96 PGLPFANAVLTKV-PNFGVIGLVPCAIGGTNISQWRKGSSLYEQMIQRAQVALRGGGTIRAVLWYQGESDTVNLEDAKLY  174 (290)
Q Consensus        96 ~~~~Fa~~L~~~~-~~~~pVgiI~~a~GGtsI~~W~~~~~lY~~mi~~~~~al~~g~~i~gilW~QGEsDa~~~~~~~~Y  174 (290)
                      ++++||++|.+.+ +.++|||||+||||||+|+.|.+++.+|+.||.+++.|++.+++||||||||||||+.+..+++.|
T Consensus        94 ~~~~Fg~~L~~~l~~~~vpVglI~~A~GGt~i~~W~~~~~ly~~~i~~~~~al~~~~~ikGvlWyQGEsn~~~~~~~~~Y  173 (260)
T 2apj_A           94 PGMAFANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKRTEESRKCGGEIKAVLWYQGESDVLDIHDAESY  173 (260)
T ss_dssp             SHHHHHHHHHHHHTCTTCCEEEEECCCTTCCGGGGSTTSHHHHHHHHHHHHHGGGSCEEEEEEEECCGGGSSSHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCCeEEEEEeCCCCCcHHHHCCCcchHHHHHHHHHHhhccCCceEEEEEecCCCCCCCccCHHHH
Confidence            9999999999964 337999999999999999999999999999999999999877899999999999999743237999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEEccCCCCCChHHHHHHHhhCCCCCeEEEecCCCCCCCCCCCCCChhhHHHHHHHH
Q 041680          175 KERSDMFFTDLRSDLQSPLLPIIRVALASGEGPFIEIVRKAQLSSDLPNVRCVDAMGLPLEPDGLHLTTPAQGSTLNSWS  254 (290)
Q Consensus       175 ~~~l~~LI~~~R~d~~~~~lPfv~~ql~~~~~~~~~~vr~aQ~~~~~pn~~~v~t~~l~~~~D~iH~~~~g~~~lG~r~A  254 (290)
                      .++|+.||++||++|+.+++|||++||+++ ...++.||++|+++++||+.||++.|++...|+|||++||++++|+|||
T Consensus       174 ~~~l~~lI~~wR~~~~~~~lPf~~vql~~~-~~~~~~iReaQ~~~~~pn~~~v~t~dlg~~~D~iHp~~k~~~~vG~RlA  252 (260)
T 2apj_A          174 GNNMDRLIKNLRHDLNLPSLPIIQVAIASG-GGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQVQLGLSLA  252 (260)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEECSCC-CTTHHHHHHHHHHCCCTTEEEEECTTSCBCTTSSSBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEEeccc-cchHHHHHHHHHhccCCCeEEEEccCCCCCCCCcCCCcHHHHHHHHHHH
Confidence            999999999999999999999999999987 4679999999998889999999999999656889999999999999999


Q ss_pred             HHHHHh
Q 041680          255 NEALRV  260 (290)
Q Consensus       255 ~a~l~~  260 (290)
                      .+|+++
T Consensus       253 ~~al~~  258 (260)
T 2apj_A          253 QAYLSN  258 (260)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999986

PyMOL of 2apj

>1zmb_A Acetylxylan esterase related enzyme; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.61A {Clostridium acetobutylicum} SCOP: c.23.10.7	Back alignment and structure

>3pt5_A NANS (YJHS), A 9-O-acetyl N-acetylneuraminic acid; SGNH hydrolase, 9-O-acetyl N-acetylneuraminic acid esterase, structural genomics; 1.60A {Escherichia coli O157}	Back alignment and structure

>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}	Back alignment and structure

>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*	Back alignment and structure

>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0	Back alignment and structure

>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*	Back alignment and structure

>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}	Back alignment and structure

>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*	Back alignment and structure

>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}	Back alignment and structure

>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}	Back alignment and structure

>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A	Back alignment and structure

>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A	Back alignment and structure

>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9	Back alignment and structure

>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5	Back alignment and structure

>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3	Back alignment and structure

>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}	Back alignment and structure

>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}	Back alignment and structure

>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9	Back alignment and structure

>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}	Back alignment and structure

>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*	Back alignment and structure

>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*	Back alignment and structure

>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8	Back alignment and structure

>1esc_A Esterase; 2.10A {Streptomyces scabiei} SCOP: c.23.10.1 PDB: 1esd_A 1ese_A	Back alignment and structure

>4i8i_A Hypothetical protein; 5-stranded beta sheet flanked by 8 helices fold, structural joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides uniformis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		290
d2apja1		244	c.23.10.7 (A:17-260) Putative acetylxylan esterase	1e-58
d1zmba1		282	c.23.10.7 (A:1-282) Acetylxylan esterase related e	3e-44

>d2apja1 c.23.10.7 (A:17-260) Putative acetylxylan esterase At4g34215 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 244	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: Putative acetylxylan esterase-like
domain: Putative acetylxylan esterase At4g34215
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  185 bits (471), Expect = 1e-58
 Identities = 127/222 (57%), Positives = 157/222 (70%), Gaps = 2/222 (0%)

Query: 26  LIILAGQSNMAGRGGVTNDTRTNKLTWDGIVPPQCQPNPSILRLTAKLKWVLAHEPLHAD 85
           + IL+GQSNMAGRGGV  D   N+  WD I+PP+C PN SILRL+A L+W  AHEPLH D
Sbjct: 8   IFILSGQSNMAGRGGVFKDHHNNRWVWDKILPPECAPNSSILRLSADLRWEEAHEPLHVD 67

Query: 86  IDVNKTNGVGPGLPFANAVLTKVPNFGV-IGLVPCAIGGTNISQWRKGSSLYEQMIQRAQ 144
           ID  K  GVGPG+ FANAV  ++      IGLVPCA GGT I +W +GS LYE+M++R +
Sbjct: 68  IDTGKVCGVGPGMAFANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKRTE 127

Query: 145 VALRGGGTIRAVLWYQGESDTVNLEDAKLYKERSDMFFTDLRSDLQSPLLPIIRVALASG 204
            + + GG I+AVLWYQGESD +++ DA+ Y    D    +LR DL  P LPII+VA+ASG
Sbjct: 128 ESRKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIASG 187

Query: 205 EGPFIEIVRKAQLSSDLPNVRCVDAMGLPLEPDGLHLTTPAQ 246
            G +I+ VR+AQL   L NV CVDA GLPL+ D LHLTT AQ
Sbjct: 188 -GGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQ 228

PyMOL of d2apja1

>d1zmba1 c.23.10.7 (A:1-282) Acetylxylan esterase related enzyme {Clostridium acetobutylicum [TaxId: 1488]} Length = 282	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		290
d2apja1		244	Putative acetylxylan esterase At4g34215 {Thale cre	100.0
d1zmba1		282	Acetylxylan esterase related enzyme {Clostridium a	100.0
d1es9a_		212	Platelet-activating factor acetylhydrolase {Cow (B	98.38
d1jrla_		179	Thioesterase I, TAP {Escherichia coli [TaxId: 562]	98.35
d1fxwf_		212	Platelet-activating factor acetylhydrolase {Cow (B	98.25
d2o14a2		208	Hypothetical protein YxiM {Bacillus subtilis [TaxI	98.18
d2hsja1		211	Uncharacterized protein SP1450 {Streptococcus pneu	97.71
d1yzfa1		195	Lipase/acylhydrolase {Enterococcus faecalis [TaxId	97.4
d1k7ca_		233	Rhamnogalacturonan acetylesterase {Fungus (Aspergi	97.21
d1vjga_		201	Hypothetical protein alr1529 {Nostoc sp. pcc 7120	96.61
d3dc7a1		207	Uncharacterized protein Lp3323 {Lactobacillus plan	95.62
d3bzwa1		248	Uncharacterized protein BT2961 {Bacteroides thetai	95.36
d1esca_		302	Esterase {Streptomyces scabies [TaxId: 1930]}	93.26

>d2apja1 c.23.10.7 (A:17-260) Putative acetylxylan esterase At4g34215 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: Putative acetylxylan esterase-like
domain: Putative acetylxylan esterase At4g34215
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.3e-54  Score=382.31  Aligned_cols=240  Identities=55%  Similarity=0.919  Sum_probs=208.8

Q ss_pred             CCCccEEEEEecccccCCCCCCCCCcccccccccCCCCCCCCCCCceeeeccCCceEEccCCCCcCCCCCCCCCccchHH
Q 041680           20 QYQQQQLIILAGQSNMAGRGGVTNDTRTNKLTWDGIVPPQCQPNPSILRLTAKLKWVLAHEPLHADIDVNKTNGVGPGLP   99 (290)
Q Consensus        20 ~~~~~~V~llaGQSNM~G~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~g~W~~a~~p~~~~~~~~~~~g~g~~~~   99 (290)
                      +..+.|||||+|||||+|++.+..........+...++....+.++++..+.+++|.++.+|++..++.....++||+++
T Consensus         2 ~~~~~dV~l~aGQSNm~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~   81 (244)
T d2apja1           2 PIPPNQIFILSGQSNMAGRGGVFKDHHNNRWVWDKILPPECAPNSSILRLSADLRWEEAHEPLHVDIDTGKVCGVGPGMA   81 (244)
T ss_dssp             CCCCSEEEEEEESHHHHCCBTEEECTTTCCEEECCCCCGGGCCCTTEEEECTTSCEEECCSSTTTTTSTTSCCCBCSHHH
T ss_pred             CCCCCeEEEEECchhhcCCCCCCccccccchhhhhhhhhhhCCCcceeeecCCCceEECCCcccCCCCCCCcCcCCHHHH
Confidence            67889999999999999988665443322223333455556678888888889999999999988766556778999999


Q ss_pred             HHHHHHHhCCC-CCcEEEEEcCcCCeeecccCCCCchHHHHHHHHHHHhhcCCeeEEEEEeecCCCCCCCcCHHHHHHHH
Q 041680          100 FANAVLTKVPN-FGVIGLVPCAIGGTNISQWRKGSSLYEQMIQRAQVALRGGGTIRAVLWYQGESDTVNLEDAKLYKERS  178 (290)
Q Consensus       100 Fa~~L~~~~~~-~~pVgiI~~a~GGtsI~~W~~~~~lY~~mi~~~~~al~~g~~i~gilW~QGEsDa~~~~~~~~Y~~~l  178 (290)
                      ||+.|.+.++. ++||+||++|||||+|+.|.+++.+|..|+.+++.++..+++|+||||||||+|+.+...++.|.++|
T Consensus        82 fa~~l~~~~~~~~vpIglI~~a~GGt~i~~w~~~~~~y~~~l~~~~~a~~~~~~i~gvlW~QGEsD~~~~~~~~~Y~~~l  161 (244)
T d2apja1          82 FANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKRTEESRKCGGEIKAVLWYQGESDVLDIHDAESYGNNM  161 (244)
T ss_dssp             HHHHHHHHHTCTTCCEEEEECCCTTCCGGGGSTTSHHHHHHHHHHHHHGGGSCEEEEEEEECCGGGSSSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcEEEEeccCCCcccccchhhcchhhhHHHHHHHhhccCCceEEEEEeccCCCCCCcccHHHHHHHH
Confidence            99999988642 68999999999999999999999999999999999988888999999999999998655678899999


Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEccCCCCCChHHHHHHHhhCCCCCeEEEecCCCCCCCCCCCCCChhhHHHHHHHHHHHH
Q 041680          179 DMFFTDLRSDLQSPLLPIIRVALASGEGPFIEIVRKAQLSSDLPNVRCVDAMGLPLEPDGLHLTTPAQGSTLNSWSNEAL  258 (290)
Q Consensus       179 ~~LI~~~R~d~~~~~lPfv~~ql~~~~~~~~~~vr~aQ~~~~~pn~~~v~t~~l~~~~D~iH~~~~g~~~lG~r~A~a~l  258 (290)
                      +.||++||++|+++++||+++|+++. +..+..||++|....+||+.+|++.|++.+.|++||+.+|++++|+|||+|++
T Consensus       162 ~~li~~~R~~~~~~~lp~i~~~~~~~-~~~~~~vr~aq~~~~~~n~~~v~t~~l~~~~D~iH~~~~g~~~~G~r~a~a~~  240 (244)
T d2apja1         162 DRLIKNLRHDLNLPSLPIIQVAIASG-GGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQVQLGLSLAQAYL  240 (244)
T ss_dssp             HHHHHHHHHHTTCTTCCEEEEECSCC-CTTHHHHHHHHHHCCCTTEEEEECTTSCBCTTSSSBCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccCChhheeecCC-CCcchHHHHHHHhhhCCCeEEEECCCCCCCCCccCCCchHHHHHHHHHHHHHH
Confidence            99999999999999999999999876 45789999999877999999999999987789999999999999999999998


Q ss_pred             Hh
Q 041680          259 RV  260 (290)
Q Consensus       259 ~~  260 (290)
                      +.
T Consensus       241 ~~  242 (244)
T d2apja1         241 SN  242 (244)
T ss_dssp             HH
T ss_pred             Hh
Confidence            74

PyMOL of d2apja1

>d1zmba1 c.23.10.7 (A:1-282) Acetylxylan esterase related enzyme {Clostridium acetobutylicum [TaxId: 1488]}	Back information, alignment and structure

>d1es9a_ c.23.10.3 (A:) Platelet-activating factor acetylhydrolase {Cow (Bos taurus), alpha1 [TaxId: 9913]}	Back information, alignment and structure

>d1jrla_ c.23.10.5 (A:) Thioesterase I, TAP {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1fxwf_ c.23.10.3 (F:) Platelet-activating factor acetylhydrolase {Cow (Bos taurus), alpha2 [TaxId: 9913]}	Back information, alignment and structure

>d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1yzfa1 c.23.10.5 (A:1-195) Lipase/acylhydrolase {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1k7ca_ c.23.10.4 (A:) Rhamnogalacturonan acetylesterase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}	Back information, alignment and structure

>d1vjga_ c.23.10.6 (A:) Hypothetical protein alr1529 {Nostoc sp. pcc 7120 [TaxId: 103690]}	Back information, alignment and structure

>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]}	Back information, alignment and structure

>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d1esca_ c.23.10.1 (A:) Esterase {Streptomyces scabies [TaxId: 1930]}	Back information, alignment and structure