Citrus Sinensis ID: 041682

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MSKLKIRERLISLVTKLKLKRRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSKSPADHPRSVNTDFACMHM
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcccccccccEEEEEEccccEEEEEEcccccHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEEEHHHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHcccccccccccccccHHHHcc
Coil and Loop (DISEMBL)
MSKLKIRERLISLVTKLKlkrrkvpkgfrVMYIGEARQKFVVPIECLSSVMFRALLNQFeakdkvdgpnpivlpcsplMFQWILNlasskspadhprsvntdfacmhm
Flexible Loop (DISEMBL)
msklkireRLISlvtklklkrrkvpkgfrvmyigearqkfVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLAsskspadhprSVNTDFACMHM
Low Complexity Region (SEG)
MSKLKIRERLISLVTklklkrrkVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSKSPADHPRSVNTDFACMHM
Disordered region (IsUnstruct)
*******ERLISLVTKLKLKRRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLA*********************
Disordered Region (DISOPRED)
***************************FRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWIL*****************DFACMHM
Disordered Region (DISEMBL)
MSKLKIRERLISLVTKLKLKRRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLAS********RSVNTDFACMHM
Disordered Region (DISPRO)
*SKLKIRERLISLVTKLKLKRRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASS*********VNTD******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKLKIRERLISLVTKLKLKRRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSKSPADHPRSVNTDFACMHM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.620	0.728	0.352	1e-06
P33081	82	Auxin-induced protein 15A	no	no	0.611	0.804	0.358	1e-05
P33083	90	Auxin-induced protein 6B	no	no	0.620	0.744	0.352	4e-05
P33082	82	Auxin-induced protein X15	no	no	0.555	0.731	0.360	5e-05
P33080	92	Auxin-induced protein X10	no	no	0.518	0.608	0.368	5e-05
P33079	93	Auxin-induced protein 10A	no	no	0.694	0.806	0.315	5e-05

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGP-NPIVLPCSPLMFQW 82
           PKG+  +Y+GE  ++FV+P+  L+  +F+ LL+Q E +   D P   + +PCS  +FQ 
Sbjct: 25 APKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQH 84

Query: 83 ILNLASSK 90
          I +  S++
Sbjct: 85 ITSCLSAQ 92

Vigna radiata var. radiata (taxid: 3916)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 20 KRRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGP-NPIVLPCSPL 78
          K    PKG+  +Y+GE  ++FV+P+  L+   F+ LL+Q E +   D P   + +PCS  
Sbjct: 13 KAADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSED 72

Query: 79 MFQWILN 85
          +FQ I +
Sbjct: 73 VFQCITS 79

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 20 KRRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPN-PIVLPCSPL 78
          K   V KG+  +Y+GE  ++FV+P+  L+   F+ LL+Q E +     PN  + +PCS  
Sbjct: 21 KAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSED 80

Query: 79 MFQWILNL 86
          +FQ I + 
Sbjct: 81 VFQHITSF 88

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGP-NPIVLPCSPLMFQW 82
           PKG+  +Y+GE  ++FV+P+  ++   F+ LL Q E +   D P   + +PCS  +FQ 
Sbjct: 17 APKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQR 76

Query: 83 I 83
          I
Sbjct: 77 I 77

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 20 KRRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGP-NPIVLPC 75
          K  +VPKG+ V+Y+G+  ++F++P+  L+   F+ LLNQ E +   D P   + +PC
Sbjct: 21 KSVEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPC 77

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 6  IRERLISLVTKLKLKRRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKV 65
          I  R     T+   KR  VPKG+  +Y+G+  ++F +P+  L+   F+ LL+Q E +   
Sbjct: 8  IVRRTSFYTTQAASKRVDVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGY 67

Query: 66 DGP-NPIVLPCSPLMF 80
          D P   + +PC    F
Sbjct: 68 DHPMGGLTIPCKEEEF 83

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
224140787	160	SAUR family protein [Populus trichocarpa	0.935	0.631	0.363	7e-09
359481287	77	PREDICTED: uncharacterized protein LOC10	0.666	0.935	0.405	1e-08
224154353	109	SAUR family protein [Populus trichocarpa	0.777	0.770	0.382	2e-07
357473677	92	Auxin-induced protein 6B [Medicago trunc	0.75	0.880	0.365	3e-07
357473683	226	Auxin-induced protein-like protein [Medi	0.935	0.446	0.311	1e-06
224085816	104	SAUR family protein [Populus trichocarpa	0.564	0.586	0.442	2e-06
224091969	124	SAUR family protein [Populus trichocarpa	0.574	0.5	0.419	3e-06
224095881	114	SAUR family protein [Populus trichocarpa	0.75	0.710	0.357	5e-06
224062025	104	SAUR family protein [Populus trichocarpa	0.564	0.586	0.426	7e-06
356531571	93	PREDICTED: auxin-induced protein X10A-li	0.592	0.688	0.415	1e-05

>gi|224140787|ref|XP_002323760.1| SAUR family protein [Populus trichocarpa] gi|222866762|gb|EEF03893.1| SAUR family protein [Populus trichocarpa]

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 20/121 (16%)

Query: 5   KIRERLISLVTKLKLKRRKVPKGFRV----------MYIG-----EARQKFVVPIECLSS 49
           KI+E + SL TKLKL+++K  KGF            +Y+G     E   ++ VP+ C SS
Sbjct: 3   KIQESIRSLATKLKLRKQK--KGFEKQEPIRCNHFPVYVGDQELDEKLNRYDVPVACTSS 60

Query: 50  VMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSKSPAD--HPRSVNTDFACMH 107
           ++F+ALL QFE   +V+   PI + CS  MF+ +L L+  +S     H + +  DF  +H
Sbjct: 61  IIFQALLRQFEDILRVE-EGPITISCSKQMFESVLKLSLEESSIAEVHLQKLCGDFEKLH 119

Query: 108 M 108
           M
Sbjct: 120 M 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481287|ref|XP_003632601.1| PREDICTED: uncharacterized protein LOC100854993 [Vitis vinifera]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 31  MYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSK 90
           MY+GE  + + VP+ECLSSVM +ALL QFE +   +G  PI L CS  MF+W++ +A ++
Sbjct: 1   MYVGEEHKLYEVPVECLSSVMLQALLIQFEEEIPANG--PIALSCSLQMFEWVMGVAMAE 58

Query: 91  SPADHPRSVNTDFA 104
                   +  + A
Sbjct: 59  KTGHELLRILVNIA 72

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224154353|ref|XP_002337465.1| SAUR family protein [Populus trichocarpa] gi|222839413|gb|EEE77750.1| SAUR family protein [Populus trichocarpa]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 18/102 (17%)

Query: 5   KIRERLISLVTKLKLKRRKVPKGFRV----------MYIG-----EARQKFVVPIECLSS 49
           KI+E + SL TKLKL+++K  KGF            +Y+G     E   ++ VP+ C SS
Sbjct: 3   KIQESIRSLATKLKLRKQK--KGFEKQEPIRCNHFPVYVGDQELDEKLNRYDVPVACTSS 60

Query: 50  VMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSKS 91
           ++F+ALL QFE   +V+   PI + CS  MF+ +L L+  +S
Sbjct: 61  IIFQALLRQFEDILRVE-EGPITISCSKQMFESVLKLSLEES 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473677|ref|XP_003607123.1| Auxin-induced protein 6B [Medicago truncatula] gi|355508178|gb|AES89320.1| Auxin-induced protein 6B [Medicago truncatula]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 3  KLKIRERLISLVTKLKLKRRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAK 62
          +L +  R     ++  LK  +VPKG+  +Y+GE +++FVVPI  L+  +F+ LL+Q E +
Sbjct: 4  RLNVIRRASFTASQAALKSAEVPKGYVAVYVGEKQKRFVVPISYLNQPLFQELLHQAEEE 63

Query: 63 DKVDGP-NPIVLPCSPLMFQWI 83
             D P   + +PCS  +FQ I
Sbjct: 64 FGYDHPMGGLTIPCSEDVFQHI 85

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473683|ref|XP_003607126.1| Auxin-induced protein-like protein [Medicago truncatula] gi|355508181|gb|AES89323.1| Auxin-induced protein-like protein [Medicago truncatula]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 8/109 (7%)

Query: 3   KLKIRERLISLVTKLKLKRRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAK 62
           +L +  R     ++  LK  +VPKG+  +Y+GE +++FVVPI  L+  +F+ LL+Q E +
Sbjct: 4   RLNVIRRASFTASQAALKSAEVPKGYVAVYVGEKQKRFVVPISYLNQPLFQELLHQAEEE 63

Query: 63  DKVDGP-NPIVLPCSPLMFQ----WILNLASSKSPADHPRSVNTDFACM 106
              D P   + +PC+  +FQ    +IL+L + +   +H   +   FA +
Sbjct: 64  FGYDHPMGGLTIPCTEGVFQHNQIFILSLYTVE---NHLMEIKALFASL 109

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085816|ref|XP_002307708.1| SAUR family protein [Populus trichocarpa] gi|222857157|gb|EEE94704.1| SAUR family protein [Populus trichocarpa]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 24  VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWI 83
           VPKG  V+Y+GE R +++VPI  LSS  F+ LL Q E +   D    + +PC  ++FQ I
Sbjct: 41  VPKGHFVVYVGENRSRYIVPISILSSPEFQTLLQQAEEEFGFDHDMGLTIPCEEVVFQSI 100

Query: 84  L 84
           L
Sbjct: 101 L 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091969|ref|XP_002309421.1| SAUR family protein [Populus trichocarpa] gi|222855397|gb|EEE92944.1| SAUR family protein [Populus trichocarpa]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 24  VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWI 83
            P GF  +Y+GE R++FVVP  CLS  +F+ LL +       D  N +V+PC+   FQ +
Sbjct: 44  TPTGFFAIYVGEDRERFVVPTSCLSHPLFKMLLEKSYNVFGFDQRNRLVVPCNVSTFQEV 103

Query: 84  LN 85
           LN
Sbjct: 104 LN 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095881|ref|XP_002310499.1| SAUR family protein [Populus trichocarpa] gi|222853402|gb|EEE90949.1| SAUR family protein [Populus trichocarpa]

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 14/95 (14%)

Query: 6  IRERLISLVTKLKLKRRK--------VPKGFRVMYIGEAR-----QKFVVPIECLSSVMF 52
          I++RL SL  +L LK++K        +P     +Y+G+       +++ VP+ C SS++F
Sbjct: 4  IQKRLRSLAARLNLKKQKKGYEKQVPIPSKHFPVYVGDQELEGNLKRYDVPVACTSSIIF 63

Query: 53 RALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLA 87
          +ALL QF+    VD   PI L CS  MF+ +L L+
Sbjct: 64 QALLRQFDDILAVD-EGPITLSCSKQMFESVLKLS 97

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062025|ref|XP_002300717.1| SAUR family protein [Populus trichocarpa] gi|222842443|gb|EEE79990.1| SAUR family protein [Populus trichocarpa]

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 24  VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWI 83
           VPKG  V+Y+GE R +++VPI  LS   F+ LL Q E +   D    + +PC  ++FQ I
Sbjct: 41  VPKGHFVVYVGENRSRYIVPISILSRPEFQTLLQQAEEEFGFDHDMGLTIPCEEVVFQSI 100

Query: 84  L 84
           L
Sbjct: 101 L 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531571|ref|XP_003534350.1| PREDICTED: auxin-induced protein X10A-like [Glycine max]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 20 KRRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGP-NPIVLPCSPL 78
          K  +VPKG+  +Y+GE  ++FV+PI  L+   F+ LLNQ E +   D P   + +PCS  
Sbjct: 22 KTLEVPKGYLAVYVGERMKRFVIPISYLTQPSFQELLNQAEEEFGYDHPMGGLTIPCSED 81

Query: 79 MFQWI 83
          +FQ I
Sbjct: 82 VFQNI 86

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
TAIR|locus:2139589	107	AT4G34760 "AT4G34760" [Arabido	0.583	0.588	0.349	1e-06
TAIR|locus:2005709	108	AT1G75580 "AT1G75580" [Arabido	0.583	0.583	0.365	1.3e-06
TAIR|locus:2084851	160	AT3G43120 [Arabidopsis thalian	0.648	0.437	0.295	2.6e-06
TAIR|locus:2045086	108	AT2G16580 "AT2G16580" [Arabido	0.537	0.537	0.362	3.4e-06
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	0.768	0.838	0.337	3.4e-06
TAIR|locus:2047117	104	AT2G21220 "AT2G21220" [Arabido	0.583	0.605	0.317	4.3e-06
TAIR|locus:2180464	190	AT5G20810 "AT5G20810" [Arabido	0.675	0.384	0.287	6e-06
TAIR|locus:2155016	99	AT5G66260 "AT5G66260" [Arabido	0.574	0.626	0.338	7e-06
TAIR|locus:2116860	104	AT4G34770 [Arabidopsis thalian	0.722	0.75	0.325	7e-06
TAIR|locus:2161543	91	SAUR20 "AT5G18020" [Arabidopsi	0.583	0.692	0.323	9e-06

TAIR|locus:2139589 AT4G34760 "AT4G34760" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 22/63 (34%), Positives = 38/63 (60%)

Query:    24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWI 83
             VPKG   +Y+GE R +++VPI  L+   F++LL + E +   D    + +PC  L+FQ +
Sbjct:    43 VPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTL 102

Query:    84 LNL 86
              ++
Sbjct:   103 TSM 105

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2005709 AT1G75580 "AT1G75580" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 23/63 (36%), Positives = 38/63 (60%)

Query:    24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWI 83
             VPKG  V+Y+GE R ++VVPI  L+   F+ LL Q E +   D    + +PC  ++F+ +
Sbjct:    44 VPKGHFVVYVGENRVRYVVPISFLTRPEFQLLLQQAEEEFGFDHDMGLTIPCEEVVFRSL 103

Query:    84 LNL 86
              ++
Sbjct:   104 TSM 106

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2084851 AT3G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 21/71 (29%), Positives = 38/71 (53%)

Query:    24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWI 83
             VPKG+  +Y+G   ++F++P   LS  +F+ LL + E +   D    + +PC    F+++
Sbjct:    79 VPKGYLAVYVGPELRRFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGALTIPCEVETFKYL 138

Query:    84 LNLASSKSPAD 94
             L    +  P D
Sbjct:   139 LKCIENH-PKD 148

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2045086 AT2G16580 "AT2G16580" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 21/58 (36%), Positives = 34/58 (58%)

Query:    24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQ 81
             VPKG   +Y+G  R +++VPI  L+++ F+ LL + E +   D    + +PC  L FQ
Sbjct:    44 VPKGHFPVYVGHNRSRYIVPISFLTNLDFQCLLRRAEEEFGFDHDMGLTIPCDELFFQ 101

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 30/89 (33%), Positives = 46/89 (51%)

Query:     2 SKLKIRERLISLVTXXXXXXXXVPKGFRVMYIGEARQK-FVVPIECLSSVMFRALLNQFE 60
             SK  +R+  + L +        VPKG+  +Y+GE   K FVVP+  L    F+ LL + E
Sbjct:    12 SKQILRQAKL-LSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQPSFQDLLRKAE 70

Query:    61 AKDKVDGP-NPIVLPCSPLMFQWILNLAS 88
              +   D P   + +PCS  +F   ++LAS
Sbjct:    71 EEFGFDHPMGGLTIPCSEEIF---IDLAS 96

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2047117 AT2G21220 "AT2G21220" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 20/63 (31%), Positives = 38/63 (60%)

Query:    24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWI 83
             VPKG   +Y+GE R +++VPI  L+   F++LL Q E +   +    + +PC  ++F+ +
Sbjct:    40 VPKGHFPVYVGEKRSRYIVPISFLTHPKFKSLLQQAEEEFGFNHDMGLTIPCEEVVFRSL 99

Query:    84 LNL 86
              ++
Sbjct:   100 TSM 102

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2180464 AT5G20810 "AT5G20810" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 6.0e-06, P = 6.0e-06
 Identities = 21/73 (28%), Positives = 37/73 (50%)

Query:    24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWI 83
             VPKG   +Y+G   ++F++P   LS  +F+ LL + E +   D    + +PC    F+++
Sbjct:    79 VPKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEVETFKYL 138

Query:    84 LNLASSKSPADHP 96
             L    +     HP
Sbjct:   139 LKCMENNLKDLHP 151

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2155016 AT5G66260 "AT5G66260" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query:    24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWI 83
             VPKG  V+Y+G +R + V+PI  L+  +F+ LL Q E +      N + +PC    F+ +
Sbjct:    34 VPKGHFVVYVGHSRSRHVIPISFLTHPIFQMLLQQSEEEFGFFQDNGLTIPCDEHFFRAL 93

Query:    84 LN 85
             ++
Sbjct:    94 IS 95

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116860 AT4G34770 [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 27/83 (32%), Positives = 44/83 (53%)

Query:     9 RLISLVTXXXXXXXXVPKGFRVMYIGEA--RQKFVVPIECLSSVMFRALLNQFEAKDKVD 66
             R+ SL+         VPKG   +Y+GE   R++FV+PI  L+  +F+ LLN  E +   D
Sbjct:    22 RIASLLATSGTNN--VPKGHVAVYVGETYHRKRFVIPISYLNHPLFQGLLNLAEEEFGFD 79

Query:    67 GP-NPIVLPCSPLMFQWILNLAS 88
              P   + +PC+   F  + ++ S
Sbjct:    80 HPMGGLTIPCTEDYFTALASILS 102

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 21/65 (32%), Positives = 38/65 (58%)

Query:    13 LVTXXXXXXXXVPKGFRVMYIGEARQK-FVVPIECLSSVMFRALLNQFEAKDKVDGP-NP 70
             +++         PKGF  +Y+GE+++K ++VPI  L+   F+ALL++ E +   D P   
Sbjct:    13 ILSRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMGG 72

Query:    71 IVLPC 75
             + +PC
Sbjct:    73 LTIPC 77

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	108
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	9e-12
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	3e-07
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	4e-04
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	0.003

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score = 56.2 bits (136), Expect = 9e-12
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 14/96 (14%)

Query: 1  MSKLKIRER--LISLVTKLKLKRRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQ 58
           +K  I       S  +  K     VPKG   +Y+GE  ++FVVPI  L+  +F+ LL++
Sbjct: 10 SAKKWILSAASGRSRGSSSKSSSADVPKGHFAVYVGEETRRFVVPISYLNHPLFQELLDR 69

Query: 59 ------FEAKDKVDGPNPIVLPCSPLMFQWILNLAS 88
                F      D    + +PC  ++F+ +L +  
Sbjct: 70 AEEEFGF------DQDGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 24 VPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQ 81
          VPKG   +Y+GE R +++VPI  L+   F++LL Q E +   D    + +PC  ++F+
Sbjct: 40 VPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFR 97

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 36.3 bits (83), Expect = 4e-04
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 24 VPKGFRVMYIGEA--RQKFVVPIECLSSVMFRALLNQFE 60
          VPKG   +Y+GE   +++FVVPI  L+  +FR  LN+ E
Sbjct: 39 VPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAE 77

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 24  VPKGFRVMYIGEA----RQKFVVPIECLSSVMFRALLNQFEAKDKVDGP-NPIVLPCSPL 78
           VPKG   +Y+GE     +++FVVPI  L+   F+  L++ E +   + P   + +PC   
Sbjct: 35  VPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREE 94

Query: 79  MFQWILNLASSK 90
           +F   L+L +S+
Sbjct: 95  VF---LDLIASR 103

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PRK02899	197	adaptor protein; Provisional	85.73
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	83.4
PRK02315	233	adaptor protein; Provisional	82.16

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=2.4e-37  Score=217.57  Aligned_cols=84  Identities=31%  Similarity=0.503  Sum_probs=77.0

Q ss_pred             HHHHHHhhhccccccc----ccccCCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEecCCHHH
Q 041682            4 LKIRERLISLVTKLKL----KRRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLM   79 (108)
Q Consensus         4 ~~~~~R~~~~~~~~~s----~~~~vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IPC~~~~   79 (108)
                      +++++||+|.+++++.    .+.+||+||||||||++++||+||++|||||+|++||++|||||||+|+|+|+|||+++.
T Consensus        16 kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~~   95 (104)
T PLN03090         16 KQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVV   95 (104)
T ss_pred             HHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHHH
Confidence            4566789888876532    577899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 041682           80 FQWILNLA   87 (108)
Q Consensus        80 Fe~vl~~i   87 (108)
                      |++++|+|
T Consensus        96 Fe~ll~~i  103 (104)
T PLN03090         96 FRSLTSMI  103 (104)
T ss_pred             HHHHHHHh
Confidence            99999998

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=1.2e-35  Score=206.65  Aligned_cols=68  Identities=37%  Similarity=0.735  Sum_probs=65.9

Q ss_pred             cccCCCceEEEEeecCCeEEEEeccccCChHHHHHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHHh
Q 041682           21 RRKVPKGFRVMYIGEARQKFVVPIECLSSVMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLAS   88 (108)
Q Consensus        21 ~~~vpkG~~aVyVG~e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~   88 (108)
                      ..++|+||||||||++++||+||++|||||+|++||++|||||||+++|+|+|||+++.|++++|+|+
T Consensus        33 ~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   33 ESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             cCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            47899999999999999999999999999999999999999999999999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=2.1e-35  Score=207.92  Aligned_cols=83  Identities=24%  Similarity=0.402  Sum_probs=72.5

Q ss_pred             HHHHHHhhhccccc--ccccccCCCceEEEEeec----CCeEEEEeccccCChHHHHHHHhhhhcCCCCC-CCCeEecCC
Q 041682            4 LKIRERLISLVTKL--KLKRRKVPKGFRVMYIGE----ARQKFVVPIECLSSVMFRALLNQFEAKDKVDG-PNPIVLPCS   76 (108)
Q Consensus         4 ~~~~~R~~~~~~~~--~s~~~~vpkG~~aVyVG~----e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~-~G~L~IPC~   76 (108)
                      ++|.+|++.+.+..  ++.+.+|||||||||||+    +++||+||++|||||.|++||++|||||||+| +|+|+|||+
T Consensus        13 k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd   92 (105)
T PLN03220         13 KQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCR   92 (105)
T ss_pred             HHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCC
Confidence            45667888555433  236779999999999997    58999999999999999999999999999999 599999999


Q ss_pred             HHHHHHHHHH
Q 041682           77 PLMFQWILNL   86 (108)
Q Consensus        77 ~~~Fe~vl~~   86 (108)
                      ++.|++++..
T Consensus        93 ~~~F~~ll~s  102 (105)
T PLN03220         93 EEVFLDLIAS  102 (105)
T ss_pred             HHHHHHHHHh
Confidence            9999999874

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=1.1e-33  Score=200.11  Aligned_cols=84  Identities=26%  Similarity=0.428  Sum_probs=71.7

Q ss_pred             HHHHHHhhhcccccc-------cccccCCCceEEEEeec--CCeEEEEeccccCChHHHHHHHhhhhcCCCCC-CCCeEe
Q 041682            4 LKIRERLISLVTKLK-------LKRRKVPKGFRVMYIGE--ARQKFVVPIECLSSVMFRALLNQFEAKDKVDG-PNPIVL   73 (108)
Q Consensus         4 ~~~~~R~~~~~~~~~-------s~~~~vpkG~~aVyVG~--e~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~-~G~L~I   73 (108)
                      ++||+-.+-..+.++       +.+.+|||||+|||||+  |++||+||++|||||+|++||++|||||||+| +|+|+|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~I   91 (108)
T PLN03219         12 KQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTI   91 (108)
T ss_pred             HHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEE
Confidence            567765554444432       24578999999999996  58999999999999999999999999999998 599999


Q ss_pred             cCCHHHHHHHHHHH
Q 041682           74 PCSPLMFQWILNLA   87 (108)
Q Consensus        74 PC~~~~Fe~vl~~i   87 (108)
                      ||+++.|+++++.-
T Consensus        92 PCd~~~F~~ll~~~  105 (108)
T PLN03219         92 PCREESFLHLITSH  105 (108)
T ss_pred             eCCHHHHHHHHHhh
Confidence            99999999999854

>PRK02899 adaptor protein; Provisional

Probab=85.73  E-value=0.72  Score=35.37  Aligned_cols=23  Identities=17%  Similarity=0.479  Sum_probs=20.5

Q ss_pred             HHHHHHHhhhhcCCCCCCCCeEe
Q 041682           51 MFRALLNQFEAKDKVDGPNPIVL   73 (108)
Q Consensus        51 ~F~~LL~~aeeEfG~~~~G~L~I   73 (108)
                      +|.++|++|..|+||..+|||+|
T Consensus        40 lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         40 LFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHhhhccCcccCCeEEE
Confidence            47777999999999999999976

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=83.40  E-value=1.4  Score=28.82  Aligned_cols=58  Identities=19%  Similarity=0.322  Sum_probs=43.4

Q ss_pred             EEeecCCeEEEEeccccC-C--hHHHHHHHhhhhcCCCCCCCCeEecCCHHHHHHHHHHHhcC
Q 041682           31 MYIGEARQKFVVPIECLS-S--VMFRALLNQFEAKDKVDGPNPIVLPCSPLMFQWILNLASSK   90 (108)
Q Consensus        31 VyVG~e~~RfvVp~~yL~-h--p~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~   90 (108)
                      +=||  .++|.++.+-|. +  ..|..+++.......-+.+|.+-|-++...|++|+..++.+
T Consensus         3 lNVG--G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    3 LNVG--GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             EEET--TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             EEEC--CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            3455  479999998876 4  47888888653222334569999999999999999999985

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02315 adaptor protein; Provisional

Probab=82.16  E-value=1.1  Score=35.00  Aligned_cols=24  Identities=13%  Similarity=0.477  Sum_probs=21.9

Q ss_pred             hHHHHHHHhhhhcCCCCCCCCeEe
Q 041682           50 VMFRALLNQFEAKDKVDGPNPIVL   73 (108)
Q Consensus        50 p~F~~LL~~aeeEfG~~~~G~L~I   73 (108)
                      -+|.++|++|..|+||..+|||+|
T Consensus        39 ~fF~~mm~Ea~~e~~F~~~~pl~~   62 (233)
T PRK02315         39 EFFYSMMDEVDEEDDFADEGPLWF   62 (233)
T ss_pred             HHHHHHHHHhccccCcccCCeEEE
Confidence            469999999999999999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00