Citrus Sinensis ID: 041688

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MAASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASNIGHIINGLQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDETELTSEIKKYLASRKAVKKTIHKASGNLEGMENKCLSPLNEKHVSMLKEVEEVTFTAFESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTIKSYNIFCLQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNILSN
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHccEEcccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccEccHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maasfhvrsnslptkshpftsEVEETLSRLRSSQAASNIGHIINGLQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDETELTSEIKKYLASRKAVKKTIHKASgnlegmenkclsplnekHVSMLKEVEEVTFTAFESLLSLVAGRRTGSMLSGFSLVSKlirpkriacredkndinefgkvdaalidhktIKSYNIFCLQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNILSN
Flexible Loop (DISEMBL)
maasfhvrsnslptkshpftsEVEETLSRLRSSQAASNIGHIINGLQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSAlrrrkgdeteltSEIKKYLASRKAVKKTIHKasgnlegmenkCLSPLNEKHVSMLKEVEEVTFTAFESLLSLVAGRRTGSMLSGFSLVSKLIRPKRiacredkndinefGKVDAALIDHKTIKSYNIFCLQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNILSN
Low Complexity Region (SEG)
MAASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASNIGHIINGLQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDETELTSEIKKYLASRKAVKKTIHKASGNLEGMENKCLSPLNEKHVSMLKEVEEVTFTAFESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTIKSYNIFCLQNQLKELESSIQYleegleslsrrlIKARVSLLNILSN
Disordered region (IsUnstruct)
*************************************NIGHIINGLQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALL*************************************************************KHVSMLKEVEEVTFTAFESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTIKSYNIFCLQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNI***
Disordered Region (DISOPRED)
*****HV***SLPTKSHPFTSEVEETLSRLRS********H*INGLQDLHDCVDKILQLPLTQQ*********FVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSAL****GD*TELTSEIKKYLASRKAVKKT**********************HVSMLKEVEEVTFTAFESLLS************************************EFGKVDAAL****************QLKELESSIQYLEEGLESLSRRLIKARVSLLNILS*
Disordered Region (DISEMBL)
************PTKSH****************QAASNIGHIINGLQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQS**********************SEIKKYLASRKAVKKTIHKASGNLEGMENKCLSPLNEKHVSMLKEVEEVTFTAFESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTIKSYNIFCLQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNILSN
Disordered Region (DISPRO)
***********LPTKSHPFTSEVEETLSRLRSSQAASNIGHIINGLQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDETELTSEIKKYLASRKAVKKTIHKASGNLEGMENKCLSPLNEKHVSMLKEVEEVTFTAFESLLSLVAGRRT****SGFSLVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTIKSYNIFCLQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNILSN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASNIGHIINGLQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDETELTSEIKKYLASxxxxxxxxxxxxxxxxxxxxxCLSPLNEKHVSMLKEVEEVTFTAFESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTIKSYNIFCLQNQxxxxxxxxxxxxxxxxxxxxxLIKARVSLLNILSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
224078486	293	predicted protein [Populus trichocarpa]	0.992	0.938	0.547	2e-74
297744527	294	unnamed protein product [Vitis vinifera]	0.992	0.935	0.533	2e-72
224105079	296	predicted protein [Populus trichocarpa]	0.992	0.929	0.535	8e-72
297744526	285	unnamed protein product [Vitis vinifera]	0.963	0.936	0.542	1e-71
147781907	297	hypothetical protein VITISV_037143 [Viti	0.989	0.922	0.532	3e-71
147781908	298	hypothetical protein VITISV_037144 [Viti	0.992	0.922	0.525	2e-70
225428177	297	PREDICTED: uncharacterized protein LOC10	0.989	0.922	0.525	6e-70
225428181	297	PREDICTED: uncharacterized protein LOC10	0.989	0.922	0.526	2e-69
225428187	298	PREDICTED: uncharacterized protein LOC10	0.992	0.922	0.512	2e-68
147781909	297	hypothetical protein VITISV_037145 [Viti	0.989	0.922	0.522	2e-68

>gi|224078486|ref|XP_002305548.1| predicted protein [Populus trichocarpa] gi|222848512|gb|EEE86059.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 160/292 (54%), Positives = 207/292 (70%), Gaps = 17/292 (5%)

Query: 3   ASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASN----IGHIINGLQDLHDCVDKILQ 58
           A +H RSNSLP++ HP TS++ E  SRL +SQA S+    I H +  LQDLHDCVDK++ 
Sbjct: 2   AFYHTRSNSLPSRPHPLTSQINEHFSRLNASQATSSSSSSICHKLCCLQDLHDCVDKLIL 61

Query: 59  LPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDET 118
           LPLTQ++L+Q  N K+VD +++GSL +LD+CS+A++ALLQ+K+  Q LQS +RRR+G+E 
Sbjct: 62  LPLTQKSLAQEQNEKWVDNVLDGSLGVLDVCSMARDALLQTKECAQELQSIMRRRRGNEI 121

Query: 119 ELTSEIKKYLASRKAVKKTIHKASGNLEGMENK-CLSPLNEKH-----VSMLKEVEEVTF 172
             + EI+ Y  SRK VKKTIHKA  +L+ M NK  LSP N+ H     VSMLKEVE VT 
Sbjct: 122 GFSGEIQTYSTSRKVVKKTIHKALRDLKDMGNKSSLSPFNKDHEAVAIVSMLKEVEAVTL 181

Query: 173 TAFESLLSLVA-GRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAA---LIDH 228
              ESLL+L++ G +  S LSG+SLVSKL+ PKRIAC  ++ ++NEF K+D+A   LI  
Sbjct: 182 IVLESLLTLISGGSKAQSKLSGWSLVSKLMHPKRIACEAEEAEVNEFEKLDSALHSLIYK 241

Query: 229 KTIKSYNIFCLQN---QLKELESSIQYLEEGLESLSRRLIKARVSLLNILSN 277
           KT KS N   ++N   QLKE +  IQ LEEGLESL RRLIK RVSLLN   N
Sbjct: 242 KTSKSDNTVPVENVQHQLKEFDLCIQELEEGLESLYRRLIKTRVSLLNTFVN 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744527|emb|CBI37789.3| unnamed protein product [Vitis vinifera]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 152/285 (53%), Positives = 200/285 (70%), Gaps = 10/285 (3%)

Query: 3   ASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASNIG--HIINGLQDLHDCVDKILQLP 60
           A +H RS SLP++ HP   E +E L RLR+S+A S+    H  +GL+DLHDCVD +L LP
Sbjct: 10  AYYHARSISLPSRPHPLIPEFDEHLCRLRASEATSSSSISHKFSGLKDLHDCVDNLLLLP 69

Query: 61  LTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDETEL 120
            TQQ+L+Q  + +++DEL++GSLR+LD+C  A++ALLQ+++    LQS++RRR+G E  +
Sbjct: 70  FTQQSLAQYHHEQWIDELLDGSLRLLDLCDTAKDALLQTREGANELQSSMRRRRGSENGI 129

Query: 121 TSEIKKYLASRKAVKKTIHKASGNLEGMENKC-LSPLNEKH-----VSMLKEVEEVTFTA 174
           +SEI KYL SRK VKK IHKA  NL+GM NKC  S LN        V ML+EVE VT T 
Sbjct: 130 SSEIGKYLTSRKKVKKAIHKALRNLKGMGNKCSFSALNRDPETLSTVRMLREVETVTLTV 189

Query: 175 FESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTIKSY 234
            E+LLS +AG    S  S +SLVSKL++ KR+AC E + D++EF KVD AL+  K     
Sbjct: 190 IEALLSSIAGLTAQSKRSSWSLVSKLMQHKRVACEEAEADLSEFEKVDTALVPFKAFNQN 249

Query: 235 NIFC--LQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNILSN 277
            +    +QN+L +LESSIQ LEEGLE LSRRLIK RVSLLNIL++
Sbjct: 250 QVHVDNVQNKLGKLESSIQDLEEGLEFLSRRLIKTRVSLLNILNH 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105079|ref|XP_002313679.1| predicted protein [Populus trichocarpa] gi|222850087|gb|EEE87634.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (706), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 158/295 (53%), Positives = 208/295 (70%), Gaps = 20/295 (6%)

Query: 3   ASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQA-------ASNIGHIINGLQDLHDCVDK 55
           A  H RSNSLP++ HP +S+++E  SRL +SQ        +S+I H ++ LQDLHDCVDK
Sbjct: 2   ALHHARSNSLPSRPHPLSSQIDEHFSRLNASQVISSSSSSSSSICHKLSCLQDLHDCVDK 61

Query: 56  ILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKG 115
           ++ LPLTQ+ L+Q  N K+VD++++GSLR+LD+CS+A +ALLQ+K+  Q LQS +RRR+G
Sbjct: 62  LILLPLTQKYLAQEQNEKWVDDVLDGSLRVLDVCSMATDALLQTKECAQELQSIMRRRRG 121

Query: 116 DETELTSEIKKYLASRKAVKKTIHKASGNLEGMENK-CLSPLNEKH-----VSMLKEVEE 169
           +E  ++SEIKKYL SRK VK TIHKA   L+ +ENK  LSP N+ H     VSMLKEVE 
Sbjct: 122 NEIGVSSEIKKYLTSRKVVKNTIHKALRGLKYLENKSSLSPFNKDHEAVAVVSMLKEVEA 181

Query: 170 VTFTAFESLLSLVA-GRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAA---L 225
            T T  ESLL+L++ G +  S LSG+SLVSKL+  KRIA   ++ ++NEF K+D+A   L
Sbjct: 182 ATLTVLESLLTLISGGAKAQSKLSGWSLVSKLMHHKRIARETEETEVNEFEKLDSALHTL 241

Query: 226 IDHKTIKSYNIFCLQN---QLKELESSIQYLEEGLESLSRRLIKARVSLLNILSN 277
           I  KT KS N   L+N   QLK+ +   Q LEEGLE+L RRLIK RVSLLN   N
Sbjct: 242 IYQKTSKSDNTGSLENVQQQLKDFDLCNQELEEGLENLYRRLIKTRVSLLNTFVN 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744526|emb|CBI37788.3| unnamed protein product [Vitis vinifera]

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 154/284 (54%), Positives = 202/284 (71%), Gaps = 17/284 (5%)

Query: 3   ASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASNIG--HIINGLQDLHDCVDKILQLP 60
           A +H RS SLP++ HP   E +E L RLR+S+A S+    H ++GL+DLHDCVD +L +P
Sbjct: 10  ACYHARSISLPSRPHPLIPEFDEHLRRLRASEATSSSSISHKLSGLRDLHDCVDDLLLMP 69

Query: 61  LTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDETEL 120
           LTQQ L+Q  + ++VDEL++GSLR+LDICS A++ALLQ+++  Q LQS +RRR+G E  +
Sbjct: 70  LTQQILAQYRHEQWVDELLDGSLRLLDICSTAKDALLQTREGAQELQSRMRRRRGSENGI 129

Query: 121 TSEIKKYLASRKAVKKTIHKASGNLEGMENKC-LSPLNEK-----HVSMLKEVEEVTFTA 174
           ++EI+KYL+SRK VKK IHKA  NL GME +C  S LN+       VSML+EVE +T T 
Sbjct: 130 SNEIEKYLSSRKKVKKAIHKALRNLTGMEKECRFSTLNKDTETLSMVSMLREVETITLTV 189

Query: 175 FESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTIKSY 234
             +LLS VAG    S  SG+SLVSKL++ KR+AC E ++D  EF  VDAAL         
Sbjct: 190 LGALLSSVAGAAAQSKRSGWSLVSKLMQHKRVACEEAESDHGEFEMVDAALC-------- 241

Query: 235 NIFCLQNQ-LKELESSIQYLEEGLESLSRRLIKARVSLLNILSN 277
            I C +N+ + +LESSIQ LEEG+E LSRRLIK RVSLLNILS+
Sbjct: 242 TILCNKNKSVAKLESSIQDLEEGIEFLSRRLIKTRVSLLNILSH 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781907|emb|CAN69929.1| hypothetical protein VITISV_037143 [Vitis vinifera]

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 154/289 (53%), Positives = 203/289 (70%), Gaps = 15/289 (5%)

Query: 3   ASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASNIG--HIINGLQDLHDCVDKILQLP 60
           A +H RS SLP++ HP   E +E L RLR+S+A S+    H  +GL+DLHDCVD +L LP
Sbjct: 10  AYYHARSISLPSRPHPLIPEFDEHLCRLRASEATSSSSISHKFSGLKDLHDCVDNLLLLP 69

Query: 61  LTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDETEL 120
            TQQ+L+Q  + ++VDEL++GSLR+LD+C  A++ALLQ+++    LQS++RRR+G E  +
Sbjct: 70  FTQQSLAQYHHEQWVDELLDGSLRLLDLCDTAKDALLQTREGAHELQSSMRRRRGGENGI 129

Query: 121 TSEIKKYLASRKAVKKTIHKASGNLEGMENKC-LSPLNEKH-----VSMLKEVEEVTFTA 174
           +SEI KYL SRK +KK IHK   NL+GM NKC  S LN        VSML+EVE VT T 
Sbjct: 130 SSEIGKYLTSRKKIKKAIHKVLRNLKGMGNKCSFSALNRDPETLSTVSMLREVETVTLTV 189

Query: 175 FESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAA---LIDHKTI 231
            E+LLS +AG    S  S +SLVSKL++ KR+AC E + D++EF KVDAA   L+ HK  
Sbjct: 190 LEALLSSIAGVTAQSKRSSWSLVSKLMQHKRVACEEAEADLSEFEKVDAALCTLLGHKN- 248

Query: 232 KSYNIFC---LQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNILSN 277
           KS N+     + N++ +LE SIQ LEEG+E LSRRLIK RVSLLNILS+
Sbjct: 249 KSVNVVHDDNVHNEVAKLELSIQDLEEGIEFLSRRLIKTRVSLLNILSH 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781908|emb|CAN69930.1| hypothetical protein VITISV_037144 [Vitis vinifera]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/289 (52%), Positives = 206/289 (71%), Gaps = 14/289 (4%)

Query: 3   ASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASNIGHIIN---GLQDLHDCVDKILQL 59
           AS+H RS SLP++ HP   E +E L RLR+S+A S+   + +   GL+D+HDCVB +L L
Sbjct: 10  ASYHARSISLPSRPHPLIPEFDELLCRLRASEATSSSSSVSHKLSGLRDVHDCVBDLLLL 69

Query: 60  PLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDETE 119
           P TQQ L+Q  + K+VDEL++GSLR+LDIC  A+++LLQ+++    LQS +RRR+G E  
Sbjct: 70  PFTQQTLAQNRHEKWVDELLDGSLRLLDICGAAKDSLLQTREGAHELQSIMRRRRGTENG 129

Query: 120 LTSEIKKYLASRKAVKKTIHKASGNLEGMENKC-LSPLNEK-----HVSMLKEVEEVTFT 173
           ++SEI  YL SRK VKKTIHK   NL+GM++KC  S LN+       VSML+EVE VT T
Sbjct: 130 ISSEIGSYLTSRKKVKKTIHKCLRNLKGMKSKCGFSALNKDTKILSMVSMLREVETVTLT 189

Query: 174 AFESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALI-----DH 228
             E+LLSL+AG   GS  +G+SLVSKL++ KR+AC E + +I+EF KVDAAL       +
Sbjct: 190 VLEALLSLIAGPAAGSKTTGWSLVSKLMQHKRVACEEAEAEISEFEKVDAALCTILANKN 249

Query: 229 KTIKSYNIFCLQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNILSN 277
           K++   +   + N++ +LESSIQ LEEG+E LSRRLIK RVSLLNILS+
Sbjct: 250 KSVNVVHADNVHNEVAKLESSIQDLEEGIEFLSRRLIKTRVSLLNILSH 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428177|ref|XP_002281652.1| PREDICTED: uncharacterized protein LOC100255496 [Vitis vinifera]

 Score =  270 bits (690), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 152/289 (52%), Positives = 201/289 (69%), Gaps = 15/289 (5%)

Query: 3   ASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASNIG--HIINGLQDLHDCVDKILQLP 60
           A +H RS SLP++ HP   E +E L RLR+S+A S+    H  +GL+DLHDCVD +L LP
Sbjct: 10  AYYHARSISLPSRPHPLIPEFDEHLCRLRASEATSSSSISHKFSGLKDLHDCVDNLLLLP 69

Query: 61  LTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDETEL 120
            TQQ+L+Q  + +++DEL++GSLR+LD+C  A++ALLQ+++    LQS++RRR+G E  +
Sbjct: 70  FTQQSLAQYHHEQWIDELLDGSLRLLDLCDTAKDALLQTREGANELQSSMRRRRGSENGI 129

Query: 121 TSEIKKYLASRKAVKKTIHKASGNLEGMENKC-LSPLNEKH-----VSMLKEVEEVTFTA 174
           +SEI KYL SRK VKK IHKA  NL+GM NKC  S LN        V ML+EVE VT T 
Sbjct: 130 SSEIGKYLTSRKKVKKAIHKALRNLKGMGNKCSFSALNRDPETLSTVRMLREVETVTLTV 189

Query: 175 FESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAA---LIDHKTI 231
            E+LLS +AG    S  S +SLVSKL++ KR+AC E + D++EF KVD A   L+ HK  
Sbjct: 190 IEALLSSIAGLTAQSKRSSWSLVSKLMQHKRVACEEAEADLSEFEKVDTALCTLLGHKN- 248

Query: 232 KSYNIFC---LQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNILSN 277
           KS N+     + N++ +LE SIQ LEEG+E LSR LIK RVSLLNILS+
Sbjct: 249 KSVNVMHVDNVHNEVAKLELSIQDLEEGIEFLSRHLIKTRVSLLNILSH 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428181|ref|XP_002281692.1| PREDICTED: uncharacterized protein LOC100245194 [Vitis vinifera]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 151/287 (52%), Positives = 201/287 (70%), Gaps = 13/287 (4%)

Query: 3   ASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASNIG--HIINGLQDLHDCVDKILQLP 60
           A +H RS SLP++ HP   E +E L RLR+S+A S+    H ++GL+DLHDCVD +L +P
Sbjct: 10  ACYHARSISLPSRPHPLIPEFDEHLRRLRASEATSSSSISHKLSGLRDLHDCVDDLLLMP 69

Query: 61  LTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDETEL 120
           LTQQ L+Q  + ++VDEL++GSLR+LDICS A++ALLQ+++  Q LQS +RRR+G E  +
Sbjct: 70  LTQQILAQYRHEQWVDELLDGSLRLLDICSTAKDALLQTREGAQELQSRMRRRRGSENGI 129

Query: 121 TSEIKKYLASRKAVKKTIHKASGNLEGMENKC-LSPLNEK-----HVSMLKEVEEVTFTA 174
           ++EI+KYL+SRK VKK IHKA  NL GME +C  S LN+       VSML+EVE +T T 
Sbjct: 130 SNEIEKYLSSRKKVKKAIHKALRNLTGMEKECRFSTLNKDTETLSMVSMLREVETITLTV 189

Query: 175 FESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALI-----DHK 229
             +LLS VAG    S  SG+SLVSKL++ KR+AC E ++D  EF  VDAAL       +K
Sbjct: 190 LGALLSSVAGAAAQSKRSGWSLVSKLMQHKRVACEEAESDHGEFEMVDAALCTILCNKNK 249

Query: 230 TIKSYNIFCLQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNILS 276
           ++   +   + N+L +LE SI  LEE +E LSRRLIK RVSLLNILS
Sbjct: 250 SVNLVHADDVHNELGKLELSIHDLEEEIELLSRRLIKTRVSLLNILS 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428187|ref|XP_002281737.1| PREDICTED: uncharacterized protein LOC100257230 [Vitis vinifera] gi|297744524|emb|CBI37786.3| unnamed protein product [Vitis vinifera]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 148/289 (51%), Positives = 203/289 (70%), Gaps = 14/289 (4%)

Query: 3   ASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASNIG---HIINGLQDLHDCVDKILQL 59
           + +HVRS SLP++ HP   E +E L RL+  ++  +     H ++GL+D+HDCVD +L L
Sbjct: 10  SQYHVRSISLPSRPHPLIPEFDEHLCRLKVPESTCSSSSISHKLSGLKDVHDCVDDLLLL 69

Query: 60  PLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDETE 119
           PLTQQAL+Q    K+VDEL+ GSL++LD+C  A++ALLQ++Q    LQS++RRR+G +  
Sbjct: 70  PLTQQALAQNCLEKWVDELLEGSLKLLDVCGTAKDALLQTRQHAYELQSSIRRRRGGKNG 129

Query: 120 LTSEIKKYLASRKAVKKTIHKASGNLEGMENKC-LSPLNEKH-----VSMLKEVEEVTFT 173
           +++E+++YL SRK V K IHKA   L+GMENKC  SPLN+       VSML+EVE VT T
Sbjct: 130 ISTEVEEYLTSRKKVVKAIHKALKTLKGMENKCSFSPLNKDPETISMVSMLREVETVTVT 189

Query: 174 AFESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAA---LIDHK- 229
             ESLLS +AG    S  SG+SLVS L+  KR+A  +   D++EF KVDAA   LI HK 
Sbjct: 190 VLESLLSSIAGATARSKPSGWSLVSTLMHQKRVAFEDAAVDLSEFEKVDAALYPLIGHKG 249

Query: 230 -TIKSYNIFCLQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNILSN 277
            ++   ++  ++N+L++LESSIQ LEEG+E L RRLIK RVSLLNILS+
Sbjct: 250 RSVNLVHVDRVRNELEKLESSIQDLEEGIEFLPRRLIKTRVSLLNILSH 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781909|emb|CAN69931.1| hypothetical protein VITISV_037145 [Vitis vinifera]

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 150/287 (52%), Positives = 200/287 (69%), Gaps = 13/287 (4%)

Query: 3   ASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASNIG--HIINGLQDLHDCVDKILQLP 60
           A +H RS SLP++ HP   E +E L RLR+S+A S+    H ++GL+DLHDCVD +L +P
Sbjct: 10  ACYHARSISLPSRPHPLIPEFDEHLRRLRASEATSSSSISHKLSGLRDLHDCVDDLLLMP 69

Query: 61  LTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDETEL 120
           LTQQ L+Q  + ++VDEL++GSLR+LDICS A++ALLQ+++  Q LQS + RR+G E  +
Sbjct: 70  LTQQILAQYRHEQWVDELLDGSLRLLDICSTAKDALLQTREGAQELQSRMXRRRGSENGI 129

Query: 121 TSEIKKYLASRKAVKKTIHKASGNLEGMENKC-LSPLNEK-----HVSMLKEVEEVTFTA 174
           ++EI+KYL+SRK VKK IHKA  NL GME +C  S LN+       VSML+EVE +T T 
Sbjct: 130 SNEIEKYLSSRKKVKKAIHKALRNLTGMEKECRFSTLNKDTETLSMVSMLREVETITLTV 189

Query: 175 FESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALI-----DHK 229
             +LLS VAG    S  SG+SLVSKL++ KR+AC E ++D  EF  VDAAL       +K
Sbjct: 190 LGALLSSVAGAAAQSKRSGWSLVSKLMQHKRVACEEAESDHGEFEMVDAALCTILCNKNK 249

Query: 230 TIKSYNIFCLQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNILS 276
           ++   +   + N+L +LE SI  LEE +E LSRRLIK RVSLLNILS
Sbjct: 250 SVNLVHADDVHNELGKLELSIHDLEEEIELLSRRLIKTRVSLLNILS 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2827681	263	AT2G17080 "AT2G17080" [Arabido	0.862	0.908	0.414	1.8e-46
TAIR|locus:2827661	263	AT2G17070 "AT2G17070" [Arabido	0.862	0.908	0.410	1e-45
TAIR|locus:2132826	253	AT4G35200 "AT4G35200" [Arabido	0.848	0.928	0.387	1.8e-39
TAIR|locus:2132831	250	AT4G35210 "AT4G35210" [Arabido	0.833	0.924	0.392	4.8e-39
TAIR|locus:2127928	284	AT4G35690 "AT4G35690" [Arabido	0.956	0.933	0.290	1.9e-28
TAIR|locus:2827911	292	AT2G17680 "AT2G17680" [Arabido	0.931	0.883	0.290	6.8e-24
TAIR|locus:2127958	283	AT4G35710 "AT4G35710" [Arabido	0.935	0.915	0.258	3.9e-21
TAIR|locus:2081800	277	AT3G51400 "AT3G51400" [Arabido	0.949	0.949	0.292	8.3e-19
TAIR|locus:2128008	288	AT4G35660 "AT4G35660" [Arabido	0.967	0.930	0.271	5.3e-17
TAIR|locus:2199731	226	AT1G76210 "AT1G76210" [Arabido	0.555	0.681	0.333	6e-16

TAIR|locus:2827681 AT2G17080 "AT2G17080" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 106/256 (41%), Positives = 173/256 (67%)

Query:     1 MAASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASN-----IGHIINGLQDLHDCVDK 55
             MA SFHVRSNS P++SHP  + V+E L+RLRSS+ AS+     I   ++ LQ+LH+ +DK
Sbjct:     1 MAVSFHVRSNSFPSRSHPQAAHVDEQLARLRSSEQASSSSSSSICQRLDNLQELHESLDK 60

Query:    56 ILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKG 115
             ++  P+TQQALSQ  N+K V++L++GSLRILD+C+I+++AL + K+ +  +QS LRR++G
Sbjct:    61 LISRPVTQQALSQEHNKKAVEQLLDGSLRILDLCNISKDALSEMKEGLMEIQSILRRKRG 120

Query:   116 DETELTSEIKKYLASRKAVKKTIHKASGNLEGMENKCLSPLNEKHVSMLKEVEEVTFTAF 175
             D   L+ E+KKYL SRK++KK+  K   +L+  + +     N+  +++  E E +T + F
Sbjct:   121 D---LSEEVKKYLTSRKSLKKSFQKVQKSLKVTQAE---DNNDDTLAVFGEAEAITLSLF 174

Query:   176 ESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTIKSYN 235
             +SLLS ++G +T    S +S+VSKL+  K++ C   +N   EF KVD+     KT+K  +
Sbjct:   175 DSLLSYMSGSKT---CSKWSVVSKLMNKKKVTCEAQEN---EFTKVDSEFQSEKTLKMDD 228

Query:   236 IFCLQNQLKELESSIQ 251
             +  L++ +++LE  ++
Sbjct:   229 VQNLESCIQDLEDGLE 244

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2827661 AT2G17070 "AT2G17070" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 105/256 (41%), Positives = 170/256 (66%)

Query:     1 MAASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQ-----AASNIGHIINGLQDLHDCVDK 55
             MA SFHVRS+S P+  HP  + V+E L+RLRSS+     ++S+I   ++ LQ+LH+ +DK
Sbjct:     1 MAVSFHVRSHSYPSIPHPQAAHVDEQLARLRSSEETSTSSSSSICQRLDNLQELHESLDK 60

Query:    56 ILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKG 115
             +++LP+TQQAL Q  N+K V++L++GSL+ILD+C+I+++AL Q K+ +  +QS LRR++G
Sbjct:    61 LIRLPVTQQALGQEKNKKDVEQLLDGSLKILDVCNISKDALSQMKEGLMEIQSILRRKRG 120

Query:   116 DETELTSEIKKYLASRKAVKKTIHKASGNLEGMENKCLSPLNEKHVSMLKEVEEVTFTAF 175
             D   L+ E+KKYLASRK+ KKT  K   +L+  + +      +K +++  E E VT   F
Sbjct:   121 D---LSGEVKKYLASRKSFKKTFQKVQKSLKAAQAE---DNKDKSLAVFGEAEAVTIAMF 174

Query:   176 ESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTIKSYN 235
             +SL S ++G +T    S +S+VSKL+  K+I C   +N   EF KVD+     KT+K  +
Sbjct:   175 DSLFSYMSGSKT---CSKWSVVSKLMNKKKITCEAQEN---EFTKVDSEFQSEKTLKMED 228

Query:   236 IFCLQNQLKELESSIQ 251
             +  L++ +++ E  ++
Sbjct:   229 VQILESCIQDFEDGLE 244

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2132826 AT4G35200 "AT4G35200" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 98/253 (38%), Positives = 160/253 (63%)

Query:     1 MAASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASN--IGHIINGLQDLHDCVDKILQ 58
             MA SFHVRSNS P++ HP  + V+E L+RLRSS +AS+  I   ++ LQDLHD ++K+++
Sbjct:     1 MAVSFHVRSNSYPSRQHPQAAHVDEQLTRLRSSDSASSSSICQRLSNLQDLHDSLEKMIR 60

Query:    59 LPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDET 118
             L +T  ALSQ      +++L++GSLRILD+C+IA++A+ Q K+ +  +QS LRR+ GD  
Sbjct:    61 LSVTNLALSQDQ----IEKLLDGSLRILDLCNIAKDAISQMKEGLMEIQSILRRKPGD-- 114

Query:   119 ELTSEIKKYLASRKAVKKTIHKASGNLEGMENKCLSPLNEKHVSMLKEVEEVTFTAFESL 178
              L+ E+KKYL SRK +KK++ K   +L+  ++K     N   V +    E VT   FESL
Sbjct:   115 -LSGEVKKYLVSRKFLKKSLQKVIKSLKVCQSK--DSTNASLV-VFGRAEAVTMALFESL 170

Query:   179 LSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTIKSYNIFC 238
              S ++G +       +SLVSK++   ++ C  + N   EF ++D+     K+++  ++  
Sbjct:   171 FSFMSGSKA---CGKWSLVSKMMSQNKVTCEAEAN---EFTRIDSEFQSEKSLQMEDVQN 224

Query:   239 LQNQLKELESSIQ 251
             L++ +++LE  I+
Sbjct:   225 LESCIQDLEDGIE 237

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2132831 AT4G35210 "AT4G35210" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 99/252 (39%), Positives = 162/252 (64%)

Query:     1 MAASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASN--IGHIINGLQDLHDCVDKILQ 58
             MA SFHVRS+S P++ HP  + V+E L+RLRSS  AS+  I   ++ LQDLHD ++K+++
Sbjct:     1 MAVSFHVRSSSYPSRQHPQAAHVDEQLTRLRSSGTASSSSICQRLSNLQDLHDSLEKMIR 60

Query:    59 LPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDET 118
             L +T QALSQ      +++L++GS++ILD+CSI+++ L Q K+S++ +QS +RR++GD  
Sbjct:    61 LSVTNQALSQDQ----IEKLLDGSIKILDLCSISKDGLSQMKESLKEIQSIVRRKRGD-- 114

Query:   119 ELTSEIKKYLASRKAVKKTIHKASGNLEGMENKCLSPLNEKHVSMLKEVEEVTFTAFESL 178
              L++E+KKYLASRK +KK+  K   +L+  +NK     N+  +++  E E VT   FESL
Sbjct:   115 -LSAEVKKYLASRKFLKKSFEKVLKSLKTSQNK-----NDA-LAVFGEAETVTIALFESL 167

Query:   179 LSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTIKSYNIFC 238
              S ++G +       +SLVSK++   +  C  + N   EF +VD      K+++  ++  
Sbjct:   168 FSFMSGSKA---CGKWSLVSKMMSQSKGTCEAEAN---EFTRVDMEFQSEKSLQMEDVQN 221

Query:   239 LQNQLKELESSI 250
             L+  +++LE  I
Sbjct:   222 LEICIQDLEDGI 233

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2127928 AT4G35690 "AT4G35690" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 85/293 (29%), Positives = 159/293 (54%)

Query:     1 MAASFHVRSNSLPTKSHPFTSEVEETLSRLRSSQAASNIGHII----NGLQDLHDCVDKI 56
             M     +RS SLP+ SHP T+ +EE+L+++++    +     +     GL++L++C +  
Sbjct:     4 MLVKNQLRSISLPSSSHPSTTGIEESLNKVKTINTMTGSSESVLMGLEGLEELYNCTEDF 63

Query:    57 LQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRK-- 114
             L++  TQ+ +S     +F++E+++GSLR++DICS++++ ++++++ V+G+QS +RR+K  
Sbjct:    64 LKMGSTQRVMSSSDGSEFMEEMLDGSLRLMDICSVSRDLMVETQEHVRGVQSCVRRKKVV 123

Query:   115 GDETELTSEIKKYLASRKAVKKTIHKASGNLEGMEN--KCLSPLN----EKH----VSML 164
             G E +L   +  Y+  RK ++K   +  G+L+ ++      S +N    E+H    V  +
Sbjct:   124 GGEDQLDVAVAGYVGFRKNMRKEAKRLLGSLKNIDGGLSSSSSVNNGEQEEHLVVVVDAM 183

Query:   165 KEVEEVTFTAFESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAA 224
             ++V  V+     S L  ++GRR  ++ S   L S L + K     E KN++         
Sbjct:   184 RQVVSVSVAVLRSFLEFLSGRRQSNIKS--KLASVLKKKKVHHVEETKNELEN------- 234

Query:   225 LIDHKTIKSYNIFCLQNQLKELESSIQYXXXXXXXXXXXXIKARVSLLNILSN 277
              +D +   S N   LQ +L+E+E SI              I+ R SLLNI+S+
Sbjct:   235 -LDLEIFCSRND--LQKKLEEVEMSIDGFEKKLEGLFRRLIRTRASLLNIISH 284

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2827911 AT2G17680 "AT2G17680" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 86/296 (29%), Positives = 156/296 (52%)

Query:     6 HVRSNSLPTKSHPFTSEVEETLSRL-----RSSQAASNIGHI-INGLQDLHDCVDKILQL 59
             HVRS SL ++SHP T+ +EE+L +       S+ A+S   H  ++GL+DL+DC + +L++
Sbjct:     9 HVRSISLQSRSHPSTAAIEESLDKFLITMNTSTMASSESVHSGLSGLEDLYDCSEDLLKM 68

Query:    60 PLTQQALSQVSNRK---------FVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSAL 110
               TQ+ LS    +K         F++E+++GSLR++DIC+++++ ++++ + V GLQS +
Sbjct:    69 GSTQRVLSFSDEKKKKKRKVKGEFMEEMLDGSLRLMDICNVSRDLMVETHEHVLGLQSCV 128

Query:   111 RRRKGDETELTSEIKKYLASRKAVKKTIHKASGNLEG------MENKCLSPLNEKH---- 160
             RRRK        ++  Y+  RK ++K + K  G+L+       M +       + H    
Sbjct:   129 RRRKD------VDVSGYVGFRKNMRKEVKKLLGSLKNINVGLVMRDHGYDQDGDIHFLAV 182

Query:   161 VSMLKEVEEVTFTAFESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGK 220
             +  ++ V  +T +  +S    ++GR+ G+ +   S ++ ++  K+     DK   NE   
Sbjct:   183 IHAMRRVVYMTVSVLKSFFEFLSGRQNGNDVR--SKLALVLMNKKFH-DHDKMVKNELEN 239

Query:   221 VDAALIDHKTIKSYNIFCLQNQLKELESSIQYXXXXXXXXXXXXIKARVSLLNILS 276
             VD+A+       S++   L  +L+E+E  I              IK R SLLNI+S
Sbjct:   240 VDSAICGDSI--SHDD--LHEKLEEVEVWIGKFEKSLEGLFRGLIKTRASLLNIIS 291

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2127958 AT4G35710 "AT4G35710" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 74/286 (25%), Positives = 152/286 (53%)

Query:     7 VRSNSLPTKSHPFTSEVEETLSRLRSSQAASNIGHII----NGLQDLHDCVDKILQLPLT 62
             +RS SLP++S P TS +EE+L+++++    +     I     GL++L+  +++ L++   
Sbjct:    10 LRSISLPSRSQPSTSGLEESLNKIKTINTTTGSSESILMGLAGLEELYIFLEEFLKMGSK 69

Query:    63 QQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRK----GDET 118
             Q+ +S     +F++E+++GSLR++DICS++++ ++++ + V+G+QS +RR+K    G   
Sbjct:    70 QRVMSS-GGSEFMEEMLDGSLRLMDICSVSRDLMVETHEHVRGVQSYVRRKKVSGGGGGD 128

Query:   119 ELTSEIKKYLASRKAVKKTIHKASGNL---EGMENKCLSPLNEKH----VSMLKEVEEVT 171
             ++   +  Y+  RK ++K   K  G+L   +G    C +   ++     +  ++ V  V+
Sbjct:   129 KIDVAVSDYVGFRKNMRKEAKKLLGSLKKVDGGTRSCDNDHEDEQLVAVIDRVRRVVSVS 188

Query:   172 FTAFESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTI 231
                 +S L L++ RR  ++ S  + V K+ +      +      N    +D+A+      
Sbjct:   189 VVVLKSFLELLS-RRKSNIKSKLASVLKMKKDNHAPAK------NVLETLDSAIFGD--F 239

Query:   232 KSYNIFCLQNQLKELESSIQYXXXXXXXXXXXXIKARVSLLNILSN 277
              S++   LQN+L+E+E  I              I+ R S+LNI+S+
Sbjct:   240 LSHDD--LQNELEEVEMCIGGFERNLEGLFRRLIRTRASILNIISH 283

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2081800 AT3G51400 "AT3G51400" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 84/287 (29%), Positives = 143/287 (49%)

Query:     1 MAASFHVRSNSLPTKSHPF-TSEVEETLSRLRSSQAASNIGHIINGLQDLHDCVDKILQL 59
             MAAS+HVRS+SLP + HP   +++++ L++LR+    S     ++ L +L+D V  +   
Sbjct:     1 MAASYHVRSSSLPARLHPHGLNQIQQLLNKLRADDNNS-----LSLLSNLYDSVSHLFN- 54

Query:    60 PLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRK--GDE 117
                  +   V +  F   L++ SL  LD+CS  ++   + K  ++ L+SA RRR+  GD 
Sbjct:    55 --DSPSSLLVPHHSFFTHLLDLSLLHLDLCSKLRDITCRIKDCLRDLRSAFRRRRHSGDS 112

Query:   118 TELTSEIKKYLASRKAVKKTIHKASGNLEGMENKCLSPLNEKH--VSMLKEVEEVTFTAF 175
             T +   +K ++ SRKAV K I K    L  ++   LS     H  +++L++V   T   F
Sbjct:   113 T-IRCHVKAFIRSRKAVHKDIAKL---LLLLKQTGLSSSESSHPLITLLQQVCSQTCQTF 168

Query:   176 ESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDK---NDINEFGKVDAALIDH---K 229
              ++L  ++        S ++LV+KL+  K +     +      NEF  +D  L      +
Sbjct:   169 RTVLLSLSTAVPKPRPSKWALVTKLVI-KNVTSTSGQVRTGHRNEFQMMDEELRRFSMAE 227

Query:   230 TIKSYNIFCLQNQLKELESSIQYXXXXXXXXXXXXIKARVSLLNILS 276
              IK   I  +   L +++ +++             I+ARVSLLNILS
Sbjct:   228 EIKKDRIKSMITNLDKVDVAVEDLEESLERLYRRMIQARVSLLNILS 274

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2128008 AT4G35660 "AT4G35660" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 77/284 (27%), Positives = 140/284 (49%)

Query:     3 ASFHV--RSNSLPTKS-HPFTSEVEETLSRLR----SSQAASNIGHIINGLQDLHDCV-D 54
             A+ HV  RS SLPT+  HP    VEE L +++    SS A+S I   +  L +L+D V +
Sbjct:    10 ATTHVPARSISLPTRLIHPKAQRVEEELKKIQALNSSSSASSRIQLGLAKLVELYDFVNE 69

Query:    55 KILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRK 114
             +++  P  QQAL    NRK V++ ++ S+ +LD+    ++ +    + +Q LQSALRRR+
Sbjct:    70 QVISSPQGQQALRLCRNRKLVEDALDESIVLLDVSDFTRDLIGTLMEHIQELQSALRRRR 129

Query:   115 GDETELTSEIKKYLASRKAVKKTIHKASGNLEGMENKCLSPLNEKHVSMLKEVEEVTFTA 174
             G+ + + SEI+ Y++  K  K    +   +L   + K  + + ++   + +    V+   
Sbjct:   130 GNLSSVQSEIRSYISFHKKSKTEAARQVKSLARRQTKKKAWVIKQSGGLDEHSSMVSNIL 189

Query:   175 FESLLSLVAGRRTGSMLSGFSLVSKLIRPKR--IACREDKNDINEFGKVDAALIDHKTIK 232
              +S  S ++  +  S+L   S   +    K   I C ++    + FG++    I  K +K
Sbjct:   190 RQSNASTISILQ--SLLQFLSTSGENNEKKNGEIGCVDNSMIRSFFGRI----IGRKMVK 243

Query:   233 SYNIFCLQNQLKELESSIQYXXXXXXXXXXXXIKARVSLLNILS 276
               +   +  +L  +  S++             I+ R SLLNI++
Sbjct:   244 EIDAQTILGRLAMVNVSLEAIKDELSYLSRRLIQHRASLLNIVT 287

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2199731 AT1G76210 "AT1G76210" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 57/171 (33%), Positives = 95/171 (55%)

Query:    45 GLQDLHDCVDKILQ-LPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSV 103
             GL++LHDCV+ +L   P T+++LSQ    K+ +++   SLR+LDIC+++++ +   K S+
Sbjct:     8 GLRELHDCVNYLLHHCPKTRESLSQQGQEKWTEQVSEASLRMLDICNVSKDVMTLVKHSL 67

Query:   104 QGLQSALRRRKGDET-ELTSEIKKYLASRKAVKKTIHKASG---NLEGMENKCLSPLNEK 159
             Q LQ  LR   G+E+ ++  +I  Y   +  +KK   K      N++G E +   P+ + 
Sbjct:    68 QDLQLTLR---GNESSDVNEKIAAYNRYKNKLKKETLKCLNCLKNMKGNEGRVAMPIEQN 124

Query:   160 HV---SMLKEVEEVTFTAFESLLSLVA----GRRT--GSMLSGFSLVSKLI 201
              +    +LKEV  V  T  ESL SL       +R+  GS+ S FS+ S  +
Sbjct:   125 LLFVTEVLKEVRRVVVTMVESLFSLGCIPWLEKRSSKGSLSSIFSIRSSYL 175

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
pfam03087	230	pfam03087, DUF241, Arabidopsis protein of unknown	2e-40

>gnl|CDD|217360 pfam03087, DUF241, Arabidopsis protein of unknown function

 Score =  139 bits (352), Expect = 2e-40
 Identities = 88/239 (36%), Positives = 144/239 (60%), Gaps = 22/239 (9%)

Query: 45  GLQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQ 104
           GL++L+DCV+++L+   TQQ LS     KF +EL++GSLR+LDICS++++ +++ K+ V+
Sbjct: 5   GLKELYDCVEELLRSSPTQQQLSS-LQSKFFEELLDGSLRLLDICSVSRDLIVEIKEHVR 63

Query: 105 GLQSALRRRKGDETELTSEIKKYLASRKAVKKTIHKASGNLEGMENKCLSPLNEKH---- 160
            LQSALRR++  + E   E+K Y+ SRK +KK I K   +L+ M+ K  +   ++     
Sbjct: 64  ELQSALRRKRSGDLE--VEVKAYVRSRKKLKKEIAKLLNSLKKMDTKVWNNNGDQEDASA 121

Query: 161 -VSMLKEVEEVTFTAFESLLSLVAGRRTGSMLSGFSLVSKLIRPKRIACREDKNDINEFG 219
            + +L+E   VT + F S+L  ++  +T S     SL+S+  + K+   +   +  +E  
Sbjct: 122 VLDVLEETVSVTVSVFRSVLLFLSTTKT-SFDIKSSLLSEK-KSKKGGSQSSLSIRSELS 179

Query: 220 KVDAAL----IDHKTIKSYNIFCLQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNI 274
           ++D        + K I          +L+ELE+SI+ LE+ LESL RRLI+ RVSLLNI
Sbjct: 180 RLDEEKRRDNEEVKDI--------LKRLEELENSIEELEDELESLFRRLIQTRVSLLNI 230

This family represents a number of Arabidopsis proteins. Their functions are unknown. Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
PF03087	231	DUF241: Arabidopsis protein of unknown function; I	100.0
PF05633	389	DUF793: Protein of unknown function (DUF793); Inte	99.87
PF05055	336	DUF677: Protein of unknown function (DUF677); Inte	89.68
cd07665	234	BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S	83.21
cd07664	234	BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S	82.09

>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function

Probab=100.00  E-value=2.7e-68  Score=479.13  Aligned_cols=226  Identities=50%  Similarity=0.694  Sum_probs=208.3

Q ss_pred             HHHHhhHHHHHhHHHHHcCchhHHHHhhhhhhhhHHhhhhhhhHHHHhhhhHHHHHHHhHHHHHHHHHHHHhcCCCCchh
Q 041688           41 HIINGLQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRKGDETEL  120 (277)
Q Consensus        41 ~~L~~L~~l~~~v~~Ll~lP~~q~aL~~~~~~k~vee~LD~Sl~LLDvC~~~~d~l~~lke~v~eLqsalRRr~~~~~~~  120 (277)
                      +||++|.|||+|++|||++|+|||+|++++ +||||++|||||+|||+||+|||+|++||||++|||++||||++|+  +
T Consensus         1 dgL~~L~~Ly~~~~ell~lp~tq~al~~~~-~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRRr~~~~--~   77 (231)
T PF03087_consen    1 DGLSGLKDLYECLEELLQLPSTQQALSHHQ-EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRRRDDGS--I   77 (231)
T ss_pred             CchhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh--H
Confidence            589999999999999999999999999999 9999999999999999999999999999999999999999998443  9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC-CchH----HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCchh
Q 041688          121 TSEIKKYLASRKAVKKTIHKASGNLEGMENKCLSP-LNEK----HVSMLKEVEEVTFTAFESLLSLVAGRRTGSMLSGFS  195 (277)
Q Consensus       121 ~~~v~~y~~~rkk~kK~i~k~l~~LK~~~~k~~~~-~~~d----~v~~l~ev~~iti~vf~sll~~~s~~~~~~~~~~Ws  195 (277)
                      +++|++|+++|||++|+|+|+++++|+++++..++ .+.+    ++++++||+++|+++|+++++|+|+|..++++++|+
T Consensus        78 ~~~i~sy~~~rKk~kK~i~K~~~~lk~~~~~~~~~~~~~~~~~~vv~~l~ea~~~t~si~~sll~~ls~~~~~~~~~~ws  157 (231)
T PF03087_consen   78 ESEIASYIRSRKKAKKEIAKLLRSLKRMSNKSSSSNDDDEHLSAVVRVLREAREITVSIFESLLSFLSSPSKKSKSSKWS  157 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccchh
Confidence            99999999999999999999999999999984222 2222    499999999999999999999999998999999999


Q ss_pred             HHHHhhcCCccccccccccccchhhhhhHHhhccccccchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhhc
Q 041688          196 LVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTIKSYNIFCLQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNI  274 (277)
Q Consensus       196 lvskl~~~~~v~~~~~~~~~nE~~~vDaal~~~~~~~~~~~~~~~~~Le~LE~~I~~lE~gle~lFR~LI~tRVsLLNi  274 (277)
                      +|++++++++. |...+...||++++|+++..    +.+++++++++||+||.||++||+|+|+|||+|||||||||||
T Consensus       158 lvsk~~~~~~~-~~~~~~~~~e~~~~d~~~~~----~~e~~~~~~~~Le~LE~~Ie~lE~glE~vFR~LIktRVSLLNI  231 (231)
T PF03087_consen  158 LVSKLMQKKRS-CDSSEENRNEFEKVDAALKS----DEEEVQNAQKRLEELEECIEELEEGLECVFRRLIKTRVSLLNI  231 (231)
T ss_pred             HHHHHHhcccc-cchhHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999864 66666689999999988731    4688999999999999999999999999999999999999998

>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development

Probab=99.87  E-value=4.1e-21  Score=183.03  Aligned_cols=248  Identities=16%  Similarity=0.194  Sum_probs=180.1

Q ss_pred             ChhhHHHHH----Hhhhhccc-------cccHHHHHHhhHHHHHhHHHHHcCchhHH-HHhhhhhhhhHHhhhhhhhHHH
Q 041688           19 FTSEVEETL----SRLRSSQA-------ASNIGHIINGLQDLHDCVDKILQLPLTQQ-ALSQVSNRKFVDELVNGSLRIL   86 (277)
Q Consensus        19 ~~~~~e~~L----~~L~~~~~-------sss~~~~L~~L~~l~~~v~~Ll~lP~~q~-aL~~~~~~k~vee~LD~Sl~LL   86 (277)
                      .+..||.++    ..|.+...       .+||...|..+...|+.+..||  |..+. +++..+.+||+++|||+||++|
T Consensus        38 ~L~~Fq~~va~rl~~L~~~~~~~~~~LSL~W~~~~ld~~l~~~~efr~li--~~~~~~~~s~~~~dk~v~eylD~sVKlL  115 (389)
T PF05633_consen   38 ELEAFQRHVAERLSDLSPSSKDSDDFLSLSWMRKALDSFLCCHEEFRALI--TNLRDLPLSKPPDDKWVDEYLDRSVKLL  115 (389)
T ss_pred             hHHHHHHHHHHHHHHhccCcCcccccccHHHHHHHHHHHHHHHHHHHHHH--hcccccccCCchHHHHHHHHHHHHHHHH
Confidence            456677555    55655431       5899999999999999999998  33322 4566788999999999999999


Q ss_pred             HhhhhHHHHHHHhHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh----------ccC----
Q 041688           87 DICSIAQNALLQSKQSVQGLQSALRRRKGDETELTSEIKKYLASRKAVKKTIHKASGNLEGME----------NKC----  152 (277)
Q Consensus        87 DvC~~~~d~l~~lke~v~eLqsalRRr~~~~~~~~~~v~~y~~~rkk~kK~i~k~l~~LK~~~----------~k~----  152 (277)
                      ||||+++|.|.+++++..-+|.|++-.+..++   ..-..|.|+||    .+..+...++.-.          +++    
T Consensus       116 DvCNA~~~gi~~lr~~~~ll~~al~~L~~~~~---~~~~~~rRAr~----aL~dl~~~~~~~~~~~~~~~~~rnrs~~r~  188 (389)
T PF05633_consen  116 DVCNAIRDGISQLRQWQLLLQIALHALDSSRP---LGEGQLRRARK----ALSDLKIAMLDDKDSGSSGGSHRNRSFGRS  188 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CcHHHHHHHHH----HHHHHHHHHhcccccCcccccccccccccc
Confidence            99999999999999999999999999875422   12235656655    5555554442211          000    


Q ss_pred             --CC---CC--------c------------------------------------hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041688          153 --LS---PL--------N------------------------------------EKHVSMLKEVEEVTFTAFESLLSLVA  183 (277)
Q Consensus       153 --~~---~~--------~------------------------------------~d~v~~l~ev~~iti~vf~sll~~~s  183 (277)
                        ++   ++        .                                    ...++.+|.+..+|++|.-.+...++
T Consensus       189 ~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~m~~nL~~Pk~~esak~~gL~~A~Y~m~~vtvFV~~vlVAA~p  268 (389)
T PF05633_consen  189 NSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQAMGENLVLPKGKESAKGRGLLRAMYGMKSVTVFVCWVLVAAFP  268 (389)
T ss_pred             cCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHHHHHHhcCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHeee
Confidence              00   00        0                                    01277899999999999888888776


Q ss_pred             ccc-------C-CCCCCchhHHHHhhcCCcc------ccccccccccchhhhhhHH-----hhcc---ccc-------cc
Q 041688          184 GRR-------T-GSMLSGFSLVSKLIRPKRI------ACREDKNDINEFGKVDAAL-----IDHK---TIK-------SY  234 (277)
Q Consensus       184 ~~~-------~-~~~~~~Wslvskl~~~~~v------~~~~~~~~~nE~~~vDaal-----~~~~---~~~-------~~  234 (277)
                      .+.       . .|+...|+.-...+|.+..      ...+.-..++|++.||++.     +...   ...       .+
T Consensus       269 c~~rgL~~~l~~vP~~~~WA~s~~~LQ~rI~eEikkk~~kgs~gLLkEl~~ve~~vr~L~el~d~~~~p~~~e~~~ev~~  348 (389)
T PF05633_consen  269 CQDRGLQVHLSAVPRQFSWAPSFISLQERINEEIKKKERKGSCGLLKELQQVEASVRELHELIDSFQFPLEEEKEEEVRE  348 (389)
T ss_pred             cCCccccCCCCCCccccccchHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHH
Confidence            642       2 4677899987788886531      1111234689999999876     1111   111       13


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhhhcc
Q 041688          235 NIFCLQNQLKELESSIQYLEEGLESLSRRLIKARVSLLNIL  275 (277)
Q Consensus       235 ~~~~~~~~Le~LE~~I~~lE~gle~lFR~LI~tRVsLLNil  275 (277)
                      .|+++.+-.+.|++++++||.+++.+|++++.+|..+|+.|
T Consensus       349 ~V~EL~~~~~~L~~GLdpLerqVre~Fh~IV~sR~elLd~l  389 (389)
T PF05633_consen  349 AVEELARVCEALSQGLDPLERQVREVFHRIVRSRTELLDSL  389 (389)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhHHHHhcC
Confidence            48999999999999999999999999999999999999875

Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].

>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants

Probab=89.68  E-value=20  Score=34.46  Aligned_cols=42  Identities=17%  Similarity=0.392  Sum_probs=39.5

Q ss_pred             hhHHhhhhhhhHHHHhhhhHHHHHHHhHHHHHHHHHHHHhcC
Q 041688           73 KFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRK  114 (277)
Q Consensus        73 k~vee~LD~Sl~LLDvC~~~~d~l~~lke~v~eLqsalRRr~  114 (277)
                      ..|++|.|.|..=+|+|++...++-+.+.+.+-++.+|.+-+
T Consensus        66 ~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~~~~I~~al~~~~  107 (336)
T PF05055_consen   66 RLVSDYFDSSLEASDFCEALLKCIHRARDNYLPIRRALKQFE  107 (336)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Confidence            589999999999999999999999999999999999998854

This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].

>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1

Probab=83.21  E-value=23  Score=32.24  Aligned_cols=72  Identities=15%  Similarity=0.278  Sum_probs=50.6

Q ss_pred             cccHHHHHHhhHHHHHhHHHHHcCchhHHHHhhhhhhhhHHhhhhhhhHHHHhhhhHHHHHHHhHHHHHHHHHHHHhcC
Q 041688           36 ASNIGHIINGLQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSKQSVQGLQSALRRRK  114 (277)
Q Consensus        36 sss~~~~L~~L~~l~~~v~~Ll~lP~~q~aL~~~~~~k~vee~LD~Sl~LLDvC~~~~d~l~~lke~v~eLqsalRRr~  114 (277)
                      +.+++..|+.|.+++..+.++.+- +++      ++--.+.+.||+-+|++..+-.+=+.=..+-++.+.++.-|.+++
T Consensus        75 ~~~Ls~als~laev~~~i~~~~~~-qa~------qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr  146 (234)
T cd07665          75 NTALSRALSQLAEVEEKIEQLHQE-QAN------NDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKR  146 (234)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455888999999999999998854 222      334568999999999887664444444445556666776676654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2

Probab=82.09  E-value=27  Score=31.79  Aligned_cols=69  Identities=16%  Similarity=0.283  Sum_probs=45.4

Q ss_pred             cccHHHHHHhhHHHHHhHHHHHcCchhHHHHhhhhhhhhHHhhhhhhhHHHHhhhhHHHHHHHhH---HHHHHHHHHHHh
Q 041688           36 ASNIGHIINGLQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVNGSLRILDICSIAQNALLQSK---QSVQGLQSALRR  112 (277)
Q Consensus        36 sss~~~~L~~L~~l~~~v~~Ll~lP~~q~aL~~~~~~k~vee~LD~Sl~LLDvC~~~~d~l~~lk---e~v~eLqsalRR  112 (277)
                      +.+++..|+.|.+++.-+.++.+--..|       +--...+.|++-+|++..   .|++|.+-.   ++.+.++..|.+
T Consensus        75 ~~~ls~~l~~laev~~ki~~~~~~qa~~-------d~~~l~e~L~eYiR~i~s---vK~~f~~R~k~~~~~~~a~~~L~k  144 (234)
T cd07664          75 HTALSRALSQLAEVEEKIDQLHQDQAFA-------DFYLFSELLGDYIRLIAA---VKGVFDQRMKCWQKWQDAQVTLQK  144 (234)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568889999999999999986443332       233567889999987654   455554443   344455555666


Q ss_pred             cC
Q 041688          113 RK  114 (277)
Q Consensus       113 r~  114 (277)
                      ++
T Consensus       145 kr  146 (234)
T cd07664         145 KR  146 (234)
T ss_pred             HH
Confidence            54

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 5e-12
 Identities = 44/256 (17%), Positives = 93/256 (36%), Gaps = 57/256 (22%)

Query: 46  LQDLHDCVDKILQLPLTQQALSQVSNRKFVDELVN------GSLRILDICSIAQNALLQS 99
           + +  DC D        Q     + +++ +D ++       G+LR+          L + 
Sbjct: 30  VDNF-DCKD-------VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL------LSKQ 75

Query: 100 KQSVQG-LQSALRRRKGDETELTSEIKKYLASRKAVKKTIHKASGNLEGMENKCLSPLNE 158
           ++ VQ  ++  LR    +   L S IK        + +   +    L   +N+  +  N 
Sbjct: 76  EEMVQKFVEEVLRI---NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYN- 130

Query: 159 KHVSMLKEVEEVTFTAFESLLSL-------VAGRRTGSMLSGF---SLVSKLIRPKRIAC 208
             VS L+   ++     ++LL L       + G     +L G     +   +    ++ C
Sbjct: 131 --VSRLQPYLKLR----QALLELRPAKNVLIDG-----VL-GSGKTWVALDVCLSYKVQC 178

Query: 209 REDKND--INEFGKV--DAALIDHKTIKSYNIFCLQNQLKELESSIQYLEEGLESLSRRL 264
           + D     +N          +++      Y I        +  S+I+     +++  RRL
Sbjct: 179 KMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 265 IKARV---SLLNILSN 277
           +K++     LL +L N
Sbjct: 238 LKSKPYENCLL-VLLN 252

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 2e-08
 Identities = 47/321 (14%), Positives = 89/321 (27%), Gaps = 104/321 (32%)

Query: 1   MAASFHVRSN--SLPTKSHPFTSEVEETLSRLRSSQAASNIGHIINGLQDLHDC-VDKIL 57
           + +         S+ T+ +       E   RL       N   +       +   +   L
Sbjct: 94  LMSPIKTEQRQPSMMTRMY------IEQRDRLY------NDNQV---FAKYNVSRLQPYL 138

Query: 58  QLPLTQQALSQVSNRKFVDELVNG------SLRILDICS--------------------- 90
           +L   +QAL ++   K V  L++G      +   LD+C                      
Sbjct: 139 KL---RQALLELRPAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 91  -------IAQNALLQSKQSVQGLQSALRRRKGDETELTSEIKKYLASRKAVKKTIHKAS- 142
                  + Q  L Q   +           K     + +E+++ L S+       ++   
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP------YENCL 247

Query: 143 ---------GNLEGMENKC--------------LSPLNEKHVSMLKEVEEVTFTAFES-- 177
                             C              LS     H+S+  +   +T T  E   
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL--DHHSMTLTPDEVKS 305

Query: 178 LLSLVAGRRTGS----MLSGFSLVSKLIRPKRIACREDKNDINEFGKVDAALIDHKTIKS 233
           LL      R       +L+       +I  + I  R+     + +  V+   +    I+S
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSII-AESI--RDGLATWDNWKHVNCDKLT-TIIES 361

Query: 234 YNIFCLQNQLKELESSIQYLE 254
                L N L+  E    +  
Sbjct: 362 ----SL-NVLEPAEYRKMFDR 377

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 6e-05
 Identities = 48/316 (15%), Positives = 92/316 (29%), Gaps = 89/316 (28%)

Query: 2   AASFHVRSNSLP---TKSHPFT-----SEVEETLSR------LRSSQAASNIGHIINGLQ 47
                 R   LP     ++P         + + L+       +   +  + I   +N L+
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 48  --DLHDCVDK--ILQ--LPLTQQALSQV-------SNRKFVDELVNGSLRILDICSIAQN 94
             +     D+  +      +    LS +            V++L   SL       + + 
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-------VEKQ 420

Query: 95  ALLQSKQSVQGLQSALRRRKGDETEL-TSEIKKYLASRKAVKKTIHKASGNLEGMENKCL 153
              +S  S+  +   L+ +  +E  L  S +  Y   +                 ++  L
Sbjct: 421 PK-ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT---------------FDSDDL 464

Query: 154 SPLNEK---------HVSMLKEVEEVTFTAFESL-LSLVAGRRTGSMLSGFSLVSKLIRP 203
            P             H+  ++  E    T F  + L              F L  K+   
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPER--MTLFRMVFLDF-----------RF-LEQKI--- 507

Query: 204 KRIACREDKNDINEFGKVDAALIDHKTIKSYNIFCLQNQLKELESSIQYLEEGLESLSRR 263
                R D    N  G +   L   K  K Y    + +   + E  +  + + L  +   
Sbjct: 508 -----RHDSTAWNASGSILNTLQQLKFYKPY----ICDNDPKYERLVNAILDFLPKIEEN 558

Query: 264 LIKAR-VSLLNI-LSN 277
           LI ++   LL I L  
Sbjct: 559 LICSKYTDLLRIALMA 574

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 9/31 (29%), Positives = 20/31 (64%), Gaps = 4/31 (12%)

Query: 240 QNQLKELESSIQ-YLEEGLESLSRRLIKARV 269
           +  LK+L++S++ Y ++   +L+   IKA +
Sbjct: 19  KQALKKLQASLKLYADDSAPALA---IKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00