Citrus Sinensis ID: 041697

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MQEHIPFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEKKDLPKNQATNYVLCRLRKNQPIGQDKKYSSAKKRKLNDIQHNSNQSEQVTDTEVERVLTHQENQQQNYVHYQEVSCSSTGMMNEQSLSGGMGFASSVIEHSSVTD
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHcccccccccccccEEEEccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccEEccccccEEEEEEcEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEEEEEcccccHHHcccHHcccccccEEEEEccccccccccccccHHHHHHcccEEcccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEcccccccccEEEEEccccccccccccccccccccEEEEEEEEcccccccccccHHHccccccccccHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
mqehipflphgfqfrpsdEELVEHYLKKkvsgtliplaeyfirdcnlyetkpskiwdshggpflnadeDLYFFTQLKkksskgsridrkvgssggawqgedagkdivsgqskikigskkqfryekkdlpknqatnYVLCRLrknqpigqdkkyssakkrklndiqhnsnqseqvtDTEVERVLTHQENQQQNYVHYQevscsstgmmneqslsggmGFASSVIEHSSVTD
Flexible Loop (DISEMBL)
mqehipflphgfqfrpSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNADEDLYFFTQLkkksskgsridrkvgssggawqgedagkdivsgqskikigskkqfryekkdlpknqatnyvlcrlrknqpigqdkkyssakkrklndiqhnsnqseqvtDTEVERVLTHQENQQQNYVHYQEVSCSSTGMMNEQSLSGGMGFASSVIEHSSVTD
Low Complexity Region (SEG)
MQEHIPFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVsgqskikigskkqFRYEKKDLPKNQATNYVLCRLRKNQPIGQDKKYSSAKKRKLNDIQHNSNQSEQVTDTEVERVLTHQENQQQNYVHYQEVSCSSTGMMNEQSLSGGMGFASSVIEHSSVTD
Disordered region (IsUnstruct)
*******LPHGFQFRP*DEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNADEDLYFFTQL*********************************************************TNYVLCRL*****************************************************************************************
Disordered Region (DISOPRED)
*****PF**HGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEKKDLPKNQATNYVLCRLRK*****************LNDIQ*****************************************************************
Disordered Region (DISEMBL)
MQEHIPFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNADEDLYFFTQLK*******************WQGEDAGKDIVSGQSKIKIGSKKQFRYEKKDLPKNQATNYVLCRLRKNQPIGQDKKYSSAKKRKLNDIQ**************ERVLTHQENQQQNYVHYQEVSCSSTGMMNEQSLSGGMGFASSVIEHSSVTD
Disordered Region (DISPRO)
*******LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEKKDLPKNQATNYVLCRLRKNQPIGQDKKYSSAKKRK**********SEQVTDTEVERVLTHQ********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQEHIPFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEKKDLPKNQATNYVLCRLRKNQPIGQDKKYSSAKKRKLNDIQHNSNQSEQVTDTEVERVLTHQENQQQNYVHYQEVSCSSTGMMNEQSLSGGMGFASSVIEHSSVTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
Q8H4S4	425	NAC transcription factor	no	no	0.556	0.301	0.359	2e-14
A2YMR0	425	NAC transcription factor	N/A	no	0.560	0.303	0.340	3e-14
A0SPJ6	396	NAC transcription factor	N/A	no	0.560	0.325	0.340	1e-13
A0SPJ9	402	NAC transcription factor	N/A	no	0.560	0.320	0.333	4e-13
A0SPJ3	405	NAC transcription factor	N/A	no	0.560	0.318	0.316	1e-12
A0SPJ8	406	NAC transcription factor	N/A	no	0.560	0.317	0.314	1e-12
Q52QH4	318	NAC domain-containing pro	no	no	0.552	0.399	0.333	2e-12
D2SMN4	406	NAC transcription factor	N/A	no	0.560	0.317	0.314	2e-12
Q9FWX2	395	NAC domain-containing pro	no	no	0.547	0.318	0.328	2e-12
Q7F2L3	303	NAC domain-containing pro	no	no	0.521	0.396	0.328	3e-12

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 74/139 (53%), Gaps = 11/139 (7%)

Query: 6   PFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWD-SHGGPFL 64
           P LP GF+F P+DEELV HYLKKK +   +PL    I + +LY+  P   WD      F 
Sbjct: 27  PELPPGFRFHPTDEELVVHYLKKKAAS--VPLPVTIIAEVDLYKFDP---WDLPEKANF- 80

Query: 65  NADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIV-SGQSKIKIGSKKQFRY 123
             +++ YFF+   +K   G+R +R   S  G W+     K I+ SG ++ K+G KK   +
Sbjct: 81  -GEQEWYFFSPRDRKYPNGARPNRAATS--GYWKATGTDKPIMSSGSTREKVGVKKALVF 137

Query: 124 EKKDLPKNQATNYVLCRLR 142
            +   PK   TN+++   R
Sbjct: 138 YRGKPPKGVKTNWIMHEYR 156

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 9/138 (6%)

Query: 6   PFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLN 65
           P LP GF+F P+DEELV HYLKKK +   +PL    I + +LY+  P ++ +        
Sbjct: 27  PELPPGFRFHPTDEELVVHYLKKKAAS--VPLPVTIIAEVDLYKFDPWELPEKAN----F 80

Query: 66  ADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIV-SGQSKIKIGSKKQFRYE 124
            +++ YFF+   +K   G+R +R   S  G W+     K I+ SG ++ K+G KK   + 
Sbjct: 81  GEQEWYFFSPRDRKYPNGARPNRAATS--GYWKATGTDKPIMASGSTREKVGVKKALVFY 138

Query: 125 KKDLPKNQATNYVLCRLR 142
           +   PK   TN+++   R
Sbjct: 139 RGKPPKGVKTNWIMHEYR 156

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 9/138 (6%)

Query: 6   PFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLN 65
           P LP GF+F P+DEELV HYLKKK +   +PL    I + +LY+  P ++ +        
Sbjct: 26  PELPPGFRFHPTDEELVVHYLKKKAAK--VPLPVTIITEVDLYKFDPWELPEKA----TF 79

Query: 66  ADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIV-SGQSKIKIGSKKQFRYE 124
            +++ YFF+   +K   G+R +R   S  G W+     K I+ SG  + K+G KK   + 
Sbjct: 80  GEQEWYFFSPRDRKYPNGARPNRAATS--GYWKATGTDKPILASGCGREKVGVKKALVFY 137

Query: 125 KKDLPKNQATNYVLCRLR 142
           +   PK   TN+++   R
Sbjct: 138 RGKPPKGLKTNWIMHEYR 155

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|A0SPJ9|NAM2_HORVD NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=4 SV=1

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 9/138 (6%)

Query: 6   PFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLN 65
           P LP GF+F P+DEELV HYLKKK +   +PL    I + +LY+  P ++ +        
Sbjct: 26  PELPPGFRFHPTDEELVVHYLKKKAAK--VPLPVTIIAEVDLYKFDPWELPEKA----TF 79

Query: 66  ADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIV-SGQSKIKIGSKKQFRYE 124
            +++ YFF+   +K   G+R +R   S  G W+     K I+ SG  + K+G K    + 
Sbjct: 80  GEQEWYFFSPRDRKYPNGARPNRAATS--GYWKATGTDKPILASGCGREKVGVKXALVFY 137

Query: 125 KKDLPKNQATNYVLCRLR 142
           +   PK   TN+++   R
Sbjct: 138 RGKPPKGLKTNWIMHEYR 155

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|A0SPJ3|NAMA1_TRIDB NAC transcription factor NAM-A1 OS=Triticum durum GN=NAM-A1 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 13/142 (9%)

Query: 6   PFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLN 65
           P LP GF+F P+DEELV HYLKKK +   +PL    I + +LY+  P ++ +        
Sbjct: 31  PELPPGFRFHPTDEELVVHYLKKKAAK--VPLPVTIIAEVDLYKFDPWELPEKA----TF 84

Query: 66  ADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVS-----GQSKIKIGSKKQ 120
            +++ YFF+   +K   G+R +R   ++ G W+     K I++     G  + K+G KK 
Sbjct: 85  GEQEWYFFSPRDRKYPNGARPNR--AATSGYWKATGTDKPILASGTGCGLVREKLGVKKA 142

Query: 121 FRYEKKDLPKNQATNYVLCRLR 142
             + +   PK   TN+++   R
Sbjct: 143 LVFYRGKPPKGLKTNWIMHEYR 164

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321).

Triticum durum (taxid: 4567)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 11/140 (7%)

Query: 6   PFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLN 65
           P LP GF+F P+DEELV HYLKKK +   +P+    I + +LY+  P ++ +        
Sbjct: 33  PELPPGFRFHPTDEELVVHYLKKKAAKAPLPVT--IIAEVDLYKFDPWELPEKA----TF 86

Query: 66  ADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVS---GQSKIKIGSKKQFR 122
            + + YFF+   +K + G+R +R   S  G W+     K I++   G  + K+G KK   
Sbjct: 87  GEHEWYFFSPRDRKYANGARPNRAATS--GYWKATGTDKPILASATGCGREKVGVKKALV 144

Query: 123 YEKKDLPKNQATNYVLCRLR 142
           + +   P+   TN+++   R
Sbjct: 145 FYRGKPPRGLKTNWIMHEYR 164

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 8/135 (5%)

Query: 8   LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
           LP GF+F P+DEELV HYL +KV+   +P+    I + +LY+  P   WD          
Sbjct: 21  LPPGFRFHPTDEELVVHYLCRKVARQPLPVP--IIAEVDLYKLDP---WDLPEKALFGRK 75

Query: 68  EDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEKKD 127
           E  YFFT   +K   GSR +R  G   G W+   A K +    S   +G KK   +    
Sbjct: 76  E-WYFFTPRDRKYPNGSRPNRAAGR--GYWKATGADKPVAPKGSARTVGIKKALVFYSGK 132

Query: 128 LPKNQATNYVLCRLR 142
            P+   T++++   R
Sbjct: 133 APRGVKTDWIMHEYR 147

Oryza sativa subsp. japonica (taxid: 39947)

>sp|D2SMN4|NAMB1_HORVS NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=4 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 11/140 (7%)

Query: 6   PFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLN 65
           P LP GF+F P+DEELV HYLKKK +   +P+    I + +LY+  P ++ +        
Sbjct: 33  PELPPGFRFHPTDEELVVHYLKKKAAKAPLPVT--IIAEVDLYKFDPWELPEKA----TF 86

Query: 66  ADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVS---GQSKIKIGSKKQFR 122
            + + YFF+   +K   G+R +R   S  G W+     K I++   G  + K+G KK   
Sbjct: 87  GEHEWYFFSPRDRKYPNGARPNRAATS--GYWKATGTDKPILASATGCGREKVGVKKALV 144

Query: 123 YEKKDLPKNQATNYVLCRLR 142
           + +   P+   TN+++   R
Sbjct: 145 FYRGKPPRGLKTNWIMHEYR 164

Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare subsp. spontaneum (taxid: 77009)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 11/137 (8%)

Query: 8   LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
           +P GF+F P+DEELV++YL+KKV+   I +   FI+D +LY+ +P   WD      +  +
Sbjct: 7   VPPGFRFHPTDEELVDYYLRKKVASKRIEID--FIKDIDLYKIEP---WDLQELCKIGHE 61

Query: 68  E--DLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEK 125
           E  D YFF+   KK   G+R +R   +  G W+    G+D         IG +K   + K
Sbjct: 62  EQSDWYFFSHKDKKYPTGTRTNR--ATKAGFWKA--TGRDKAIYLRHSLIGMRKTLVFYK 117

Query: 126 KDLPKNQATNYVLCRLR 142
              P  Q +++++   R
Sbjct: 118 GRAPNGQKSDWIMHEYR 134

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7F2L3|NAC48_ORYSJ NAC domain-containing protein 48 OS=Oryza sativa subsp. japonica GN=NAC48 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 11/131 (8%)

Query: 8   LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
           LP GF+F P+DEELV HYL ++ +G  +P+A   I + +LY+  P ++        L  +
Sbjct: 9   LPPGFRFHPTDEELVMHYLCRRCAG--LPIAVPIIAEIDLYKFDPWQLPRMA----LYGE 62

Query: 68  EDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEKKD 127
           ++ YFF+   +K   GSR +R  GS  G W+   A K + S +    +  KK   +    
Sbjct: 63  KEWYFFSPRDRKYPNGSRPNRAAGS--GYWKATGADKPVGSPKP---VAIKKALVFYAGK 117

Query: 128 LPKNQATNYVL 138
            PK + TN+++
Sbjct: 118 APKGEKTNWIM 128

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
255577747	131	conserved hypothetical protein [Ricinus	0.530	0.931	0.441	9e-20
224105953	222	predicted protein [Populus trichocarpa]	0.843	0.873	0.318	1e-19
224054492	322	NAC domain protein, IPR003441 [Populus t	0.591	0.422	0.387	3e-19
255580284	508	transcription factor, putative [Ricinus	0.482	0.218	0.447	1e-18
255584644	376	NAC domain-containing protein, putative	0.608	0.372	0.375	7e-18
255577785	328	transcription factor, putative [Ricinus	0.756	0.530	0.326	4e-17
224147620	402	NAC domain protein, IPR003441 [Populus t	0.678	0.388	0.342	4e-17
357512399	210	NAC domain-containing protein [Medicago	0.573	0.628	0.375	1e-16
224110282	432	NAC domain protein, IPR003441 [Populus t	0.708	0.377	0.340	1e-16
449457267	211	PREDICTED: NAC domain-containing protein	0.752	0.819	0.316	1e-16

>gi|255577747|ref|XP_002529748.1| conserved hypothetical protein [Ricinus communis] gi|223530746|gb|EEF32614.1| conserved hypothetical protein [Ricinus communis]

 Score =  102 bits (255), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 76/129 (58%), Gaps = 7/129 (5%)

Query: 8   LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLY-ETKPSKIWDSHGGPFLNA 66
           LP GF+F P+D EL  HYL KK++GTL+P+ + ++  C+LY +  P  IWD  GG  L  
Sbjct: 3   LPPGFRFDPTDTELFSHYLYKKINGTLLPMQKLYVTVCDLYGQNDPWIIWDKFGGNSLTE 62

Query: 67  DEDLYFFTQLKKKSSKGS-RIDRKVG-SSGGAWQGEDAGKDI----VSGQSKIKIGSKKQ 120
            +DLYFF++LKKK+ K   R DR VG    G W GE   K I     S  ++   G KK+
Sbjct: 63  KDDLYFFSKLKKKTDKSCKRFDRNVGVDRKGTWSGEKLDKTIQFKLSSSHNRTIQGLKKR 122

Query: 121 FRYEKKDLP 129
           F YE   +P
Sbjct: 123 FSYENPTVP 131

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105953|ref|XP_002313991.1| predicted protein [Populus trichocarpa] gi|222850399|gb|EEE87946.1| predicted protein [Populus trichocarpa]

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 26/220 (11%)

Query: 9   PHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLY-ETKPSKIWDSHGGPFLNAD 67
           P G++F P+D EL   YL +KV+G  +P     ++DCNLY + +P +IW++  G  L+ +
Sbjct: 13  PPGYRFCPTDVELACFYLYRKVNGLPLPNT---VKDCNLYGDHEPWEIWEAFEGSELSNE 69

Query: 68  EDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEKKD 127
           +DL+F TQLK +S+K SR  R+VG +GG W+G+   K I +        ++K+  Y+  +
Sbjct: 70  DDLFFLTQLKNRSAKDSRSKRRVGRNGGTWKGD---KKIGTFTFDTITWTRKRLSYQNPN 126

Query: 128 LPKNQATNYVLCRLRKNQPIGQDKKYSSAKKRKLNDIQHNSNQSEQVTDTEVERVLTHQE 187
             KN   NYVLC +RK             K+    ++ HN N  E+      +R    +E
Sbjct: 127 SKKNDRCNYVLCLVRK----------KVTKRTDGTNVSHNHNAIEK--SQRCDRPFALEE 174

Query: 188 NQQQ-----NYVHYQEVSCSSTGMMNEQSLSGGM-GFASS 221
           + Q      +     ++ C+      E   +GGM  FA+S
Sbjct: 175 HHQAKRLKLDLAQPHQLICNY-NQQTEAIPTGGMSAFATS 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054492|ref|XP_002298287.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222845545|gb|EEE83092.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 24/160 (15%)

Query: 8   LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFL--- 64
           +P G +F PSDE LV HYL KK     +P   Y +R+C+LY  +P +IW   GG  L   
Sbjct: 18  MPTGCRFAPSDEVLVIHYLSKKGKNEPLPCP-YAVRECDLYGREPEEIWKEFGGDRLKRK 76

Query: 65  -NADEDLYFFTQLKKKSSK---GSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQ 120
            + D  L+FFT+LKKKS      SRIDR VG++ G W  E A + I   ++K  IGSKK+
Sbjct: 77  IDQDLGLFFFTRLKKKSGTDHGSSRIDRSVGNNIGTWHEECALRSITCSETKKNIGSKKR 136

Query: 121 FRYEKK---------------DLPKNQATNYVLCRLRKNQ 145
           F Y+                  LP N  +++V+C+L++ +
Sbjct: 137 FVYKSNKSHNRGRVSWHMLEISLPDN-TSDHVVCQLKRKE 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580284|ref|XP_002530971.1| transcription factor, putative [Ricinus communis] gi|223529447|gb|EEF31406.1| transcription factor, putative [Ricinus communis]

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 82/123 (66%), Gaps = 12/123 (9%)

Query: 7   FLPHGFQFRPSDEELVEHYLKKKVSGTLIPLA-EYFIRDCNLY-ETKPSKIWDSHGGPFL 64
            LP G++F P+D+ELV HYL  +V+    PL+ +YFI + ++Y + +P +IWDS G    
Sbjct: 12  ILPPGYRFDPTDQELVLHYLLNRVARK--PLSCQYFISEIDIYGDMEPWQIWDSLG---- 65

Query: 65  NADED-LYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRY 123
            AD D LY FT LKK+++ GS I R++GS+GG+W GED+GK+      K    ++K+FRY
Sbjct: 66  KADNDVLYVFTPLKKRAANGSTILRRIGSNGGSWHGEDSGKEFKLNGVK---WTQKRFRY 122

Query: 124 EKK 126
           E +
Sbjct: 123 ENR 125

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584644|ref|XP_002533045.1| NAC domain-containing protein, putative [Ricinus communis] gi|223527164|gb|EEF29335.1| NAC domain-containing protein, putative [Ricinus communis]

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 20/160 (12%)

Query: 1   MQEHIPFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLY-ETKPSKIWDSH 59
           MQ+    +P G++F P+D ELV +YL  K++G L+P+    + D NLY + +P ++W+  
Sbjct: 1   MQQLKDQIPVGYRFNPTDCELVGYYLFNKLNGCLLPIDNMLVADTNLYGKDEPLQLWEKF 60

Query: 60  GGPF-LNADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKD--IVSGQSKIKIG 116
           GG     +D ++Y FT+LKK   KGSRI R VG +GG W G DAGK   I + + ++  G
Sbjct: 61  GGNCSFYSDGEIYLFTKLKK---KGSRILRSVG-AGGTWHGVDAGKPVRIKTNRGQLIEG 116

Query: 117 SKKQFRYEKKDLPKNQ------------ATNYVLCRLRKN 144
           +KK F Y   +   +             + ++VLCRL+KN
Sbjct: 117 TKKCFSYRNPNSIHDGCWIMHEFSLFDISYDWVLCRLKKN 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577785|ref|XP_002529767.1| transcription factor, putative [Ricinus communis] gi|223530765|gb|EEF32633.1| transcription factor, putative [Ricinus communis]

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 25/199 (12%)

Query: 1   MQEHIPFLPHGFQFRPSDEELVEHYLKKKVSG-TLIPLAEYFIRDCNLY-ETKPSKIWDS 58
           M++ +  LP G +F+P+DEELV  YL KK +   L  +    +  C+LY + +P ++WD 
Sbjct: 1   MEQFLATLPSGCRFKPTDEELVAIYLFKKTNNLNLSDVENMVVPVCDLYGDKEPWELWDQ 60

Query: 59  HGGPFLNADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGK------DIVSGQSK 112
                L  + DL+FFT+LKKK  K SRI R+VG   G W GE+ G+      D+ + +  
Sbjct: 61  FAQNQLFINGDLFFFTELKKK-PKSSRILRRVGK--GTWHGENKGEPVNVLVDVGNAKQL 117

Query: 113 IKIGSKKQFRYEKKDLP------------KNQATNYVLCRLRKNQPIGQDKKYSSAKKRK 160
           +   +KK+F Y  ++               N +TN+VLCRLR N     D   S     +
Sbjct: 118 MIQATKKRFSYRNQNSAHHCRWILHEFSLDNVSTNWVLCRLRNNHV--SDSDNSVLVLER 175

Query: 161 LNDIQHNSNQSEQVTDTEV 179
           ++  + N+   +Q  +TE+
Sbjct: 176 VSSKRKNAEADDQCPNTEI 194

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224147620|ref|XP_002336513.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222835806|gb|EEE74241.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 89/181 (49%), Gaps = 25/181 (13%)

Query: 1   MQEHIPFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLY---ETKPSKIWD 57
           MQ+ +  LP GF+F P+DEEL+ +YL +KV G L P     I+ CNLY      P +I+ 
Sbjct: 1   MQDILSRLPPGFRFLPTDEELIRYYLHRKVHGRLTPEEADVIKLCNLYGEGARPPCEIFK 60

Query: 58  SHGGPFLNADEDLYFFTQLKKKS--SKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKI 115
             G      D+ LYFFT L KK+  S   R+ R VG+ GG W G+   + I    +    
Sbjct: 61  LAG--HKGGDDALYFFTILIKKTLNSSTQRMSRTVGTDGGTWHGDGVEEVICRLDNTEFK 118

Query: 116 GSKKQFRYEKKDLPKNQAT-------------NYVLCRLRKNQPIGQDKKYSSAKKRKLN 162
           G+K++FRY+ K  P                  N V+C+L+ +     D     ++KRK  
Sbjct: 119 GTKRRFRYQNKQRPDQHGCWTLLEYGSESISENVVICKLKIS-----DHGLKESRKRKSM 173

Query: 163 D 163
           D
Sbjct: 174 D 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512399|ref|XP_003626488.1| NAC domain-containing protein [Medicago truncatula] gi|355501503|gb|AES82706.1| NAC domain-containing protein [Medicago truncatula]

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 80/157 (50%), Gaps = 25/157 (15%)

Query: 14  FRPSDEELVEHYLKKKVSGTLIPLAEYF-IRDCNLYET--KPSKIWDSHGGPFLNADEDL 70
           F P+D+EL+  +L  ++     P+  Y  I D  L+     P +IW+          +DL
Sbjct: 11  FTPTDDELIRSFLYNRIHNN--PVPNYITILDYELFGIVKNPWEIWEEFAPSHSYCGKDL 68

Query: 71  YFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEK----- 125
           YFFT LKKKS+   R+ R +GS  G W+GED GK IV+ ++   +G KK+FR+ K     
Sbjct: 69  YFFTTLKKKSATSKRLIRTIGS--GTWEGEDTGKGIVAKETNKVLGIKKRFRFGKSNTFH 126

Query: 126 ------------KDLPKNQ-ATNYVLCRLRKNQPIGQ 149
                       K L  N  A NYVLCR RKN  I Q
Sbjct: 127 DGAWILHEYNLDKSLINNTLANNYVLCRFRKNLKINQ 163

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110282|ref|XP_002333120.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222834917|gb|EEE73366.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 92/191 (48%), Gaps = 28/191 (14%)

Query: 1   MQEHIPFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLY---ETKPSKIWD 57
           MQ+ +  LP GF+F P+DEEL+ +YL +KV G L P     I+ CN+Y      P +I+ 
Sbjct: 1   MQDILSRLPPGFRFLPTDEELIRYYLHRKVHGRLTPEEADMIKLCNVYGEGARPPCEIFK 60

Query: 58  SHGGPFLNADEDLYFFTQLKKKS--SKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKI 115
             G      D+ LYFFT L KK+  S   R+ R VG+ GG W G+   + I    +    
Sbjct: 61  LAG--HKGGDDALYFFTILIKKTLNSSTQRMSRTVGTDGGTWHGDGVEEVICRLDNTEFK 118

Query: 116 GSKKQFRYEKKDLPKNQAT-------------NYVLCRLRKNQPIGQDKKYSSAKKRKLN 162
           G+K++FRY+ K  P                  N V+C+L+    I        ++KRK  
Sbjct: 119 GTKRRFRYQNKQRPDQHGCWTLLEYGSESISENVVICKLK----ISDHGLKEYSRKRKSM 174

Query: 163 D----IQHNSN 169
           D    IQ N N
Sbjct: 175 DSSEVIQRNIN 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457267|ref|XP_004146370.1| PREDICTED: NAC domain-containing protein 90-like [Cucumis sativus]

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 29/202 (14%)

Query: 7   FLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNA 66
            +P G+ F P++EEL+ +YL  KV G   P     + D  LY  +PS+IW    G     
Sbjct: 5   LIPVGYIFCPTEEELLGYYLYNKVLGGQTPPLVLPVID--LYTQEPSQIWQQCRG---VD 59

Query: 67  DEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSG-QSKIKIGSKKQFRYEK 125
           ++D+YFFT L+KK S   RI RK+GS+GG W GE+  + + S     + +G+ K+FRYEK
Sbjct: 60  NQDIYFFTTLQKKKS---RIIRKIGSNGGTWSGENKPQQVFSSIIDNLLLGTMKRFRYEK 116

Query: 126 KDLPKNQA-------------------TNYVLCRLRKNQPIGQDKKYSSAKKRKLNDIQH 166
             + ++                      +YVLC +RK + +  +K   ++ KR+     H
Sbjct: 117 SQVKEDCTWIMYEYTLNPSIVPEGLVHDSYVLCMIRK-KIVKSEKMVMASNKRRAMTSMH 175

Query: 167 NSNQSEQVTDTEVERVLTHQEN 188
             NQ+ +    + E V+  Q++
Sbjct: 176 VDNQNHKRMKLQEEAVVDSQKD 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2095908	359	NAC047 "NAC domain containing	0.382	0.245	0.387	1.5e-15
TAIR|locus:2167155	476	NAC086 "NAC domain containing	0.386	0.186	0.383	3.2e-15
TAIR|locus:2051053	268	NAC041 "NAC domain containing	0.739	0.634	0.304	2.1e-13
TAIR|locus:2020123	301	NAC020 "NAC domain containing	0.873	0.667	0.282	5.2e-13
TAIR|locus:2089764	246	NAC057 "NAC domain containing	0.826	0.772	0.277	1.5e-12
TAIR|locus:2097720	479	NAC045 "NAC domain containing	0.386	0.185	0.404	4.1e-12
TAIR|locus:2142285	292	NAC096 "NAC domain containing	0.726	0.571	0.287	1.1e-11
TAIR|locus:2122219	377	NAC076 "NAC domain containing	0.873	0.533	0.264	1.4e-11
TAIR|locus:2167923	348	NAC101 "NAC-domain protein 101	0.813	0.537	0.265	2.5e-11
TAIR|locus:2060979	365	VND1 "vascular related NAC-dom	0.856	0.539	0.259	3.6e-11

TAIR|locus:2095908 NAC047 "NAC domain containing protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
 Identities = 38/98 (38%), Positives = 57/98 (58%)

Query:     8 LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHG-GPFLNA 66
             LP GF+F P+DEEL+ HYL+KKVS + +PL+   I D ++Y++ P   WD     PF   
Sbjct:    10 LPPGFRFHPTDEELILHYLRKKVSSSPVPLS--IIADVDIYKSDP---WDLPAKAPF--G 62

Query:    67 DEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGK 104
             +++ YFF+   +K   G+R +R   S  G W+     K
Sbjct:    63 EKEWYFFSPRDRKYPNGARPNRAAAS--GYWKATGTDK 98

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

TAIR|locus:2167155 NAC086 "NAC domain containing protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
 Identities = 38/99 (38%), Positives = 59/99 (59%)

Query:     8 LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFL-NA 66
             LP GF+F P+DEEL+ +YLK+K++G  I L    I + +LY+ +P   WD  G   + + 
Sbjct:     6 LPPGFRFHPTDEELITYYLKRKINGQEIELE--IIPEVDLYKCEP---WDLPGKSLIPSK 60

Query:    67 DEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKD 105
             D++ +FF+   +K   GSR +R   + GG W+    GKD
Sbjct:    61 DQEWFFFSPRDRKYPNGSRTNR--ATKGGYWKA--TGKD 95

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2051053 NAC041 "NAC domain containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 59/194 (30%), Positives = 95/194 (48%)

Query:     8 LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
             LP GF+F P+DEELV  YL++KV+G  +PL    I + ++ ++ P   WD  G    + +
Sbjct:    15 LPPGFRFHPTDEELVVQYLRRKVTG--LPLPASVIPETDVCKSDP---WDLPG----DCE 65

Query:    68 EDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVXXXXXXXXXXXXXFRYEKKD 127
              ++YFF+  + K   G+R +R  GS  G W+     K I              F Y+ K 
Sbjct:    66 SEMYFFSTREAKYPNGNRSNRSTGS--GYWKATGLDKQIGKKKLVVGMKKTLVF-YKGKP 122

Query:   128 LPKNQATNYVL--CRLRKNQP---IGQDKKYSSA----KKRKLNDIQHNSNQSEQVTDTE 178
              P    TN+VL   RL  +Q     GQ+  +       KKR  ++ +   ++ E+V + E
Sbjct:   123 -PNGTRTNWVLHEYRLVDSQQDSLYGQNMNWVLCRVFLKKRSNSNSKRKEDEKEEV-ENE 180

Query:   179 VERVLTHQENQQQN 192
              E   T +E +++N
Sbjct:   181 KETE-TEREREEEN 193

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2020123 NAC020 "NAC domain containing protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 5.2e-13, P = 5.2e-13
 Identities = 61/216 (28%), Positives = 93/216 (43%)

Query:     8 LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNA- 66
             LP GF+F P+DEELV +YL +KV+G  I L    I + +LY+ +P   WD     FL   
Sbjct:     6 LPPGFRFHPTDEELVAYYLDRKVNGQAIELE--IIPEVDLYKCEP---WDLPEKSFLPGN 60

Query:    67 DEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVXXXXXXXXXXXXXFRYEKK 126
             D + YF++   KK   GSR +R   +  G W+    GKD                 Y + 
Sbjct:    61 DMEWYFYSTRDKKYPNGSRTNR--ATRAGYWKA--TGKDRTVESKKMKMGMKKTLVYYRG 116

Query:   127 DLPKNQATNYVLCRLRKNQPIGQDKKYSSAKKRKLN-DIQHNSNQSEQVTDTEVERVLTH 185
               P    TN+V+   R         K S A  R    +IQ    + E+  + E E     
Sbjct:   117 RAPHGLRTNWVMHEYRLTHAPSSSLKESYALCRVFKKNIQIPKRKGEE-EEAEEESTSVG 175

Query:   186 QENQQQNYVHYQEVSCSSTGMMNEQSLSGGMGFASS 221
             +E +++    +++  C     + ++SL       SS
Sbjct:   176 KEEEEEKEKKWRK--CDGN-YIEDESLKRASAETSS 208

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2089764 NAC057 "NAC domain containing protein 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 58/209 (27%), Positives = 85/209 (40%)

Query:     8 LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFL-NA 66
             LP GF+F P+DEELV +YLK+K++G  I L    I + +LY+ +P   WD     FL + 
Sbjct:     6 LPPGFRFHPTDEELVNYYLKRKINGQEIELD--IIPEVDLYKCEP---WDLAEKSFLPSR 60

Query:    67 DEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVXXXXXXXXXXXXXFRYEKK 126
             D + YFF    +K   G R +R   + GG W+    GKD                 Y K 
Sbjct:    61 DPEWYFFGPRDRKYPNGFRTNR--ATRGGYWKS--TGKDRRVTSQSRAIGMKKTLVYYKG 116

Query:   127 DLPKNQATNYVLCRLRKNQ-----PIGQDKKYSSAKKRKLNDIQHNSNQSEQVTDTEVER 181
               P+   T++V+   R +      P      Y+  +  K N I        Q+   +   
Sbjct:   117 RAPQGIRTDWVMHEYRLDDKDCDDPSSLQDSYALCRVFKKNGICSELESERQLQTGQCSF 176

Query:   182 VLTHQE----NQQQNYVHYQEVSCSSTGM 206
                  E    N   NY +  E      G+
Sbjct:   177 TTASMEEINSNNNNNYNNDYETMSPEVGV 205

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2097720 NAC045 "NAC domain containing protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 40/99 (40%), Positives = 59/99 (59%)

Query:     8 LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFL-NA 66
             LP GF+F P+DEEL+ +YLK+K++G  I L    I + +LY+ +P   WD  G   L + 
Sbjct:     6 LPPGFRFHPTDEELITYYLKRKINGLEIELE--VIAEVDLYKCEP---WDLPGKSLLPSK 60

Query:    67 DEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKD 105
             D++ YFF+   +K   GSR +R   + GG W+    GKD
Sbjct:    61 DQEWYFFSPRDRKYPNGSRTNR--ATKGGYWKA--TGKD 95

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2142285 NAC096 "NAC domain containing protein 96" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 52/181 (28%), Positives = 80/181 (44%)

Query:     8 LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFL-NA 66
             LP GF+F P+DEEL+E+YLK+KV G  I L    + D  LY   P   W+     FL N 
Sbjct:     6 LPPGFRFHPTDEELIEYYLKRKVEGLEIELEVIPVID--LYSFDP---WELPDKSFLPNR 60

Query:    67 DEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDI-VXXXXXXXXXXXXXFRYEK 125
             D + YFF    KK   G R +R  G+  G W+    GKD  +               + K
Sbjct:    61 DMEWYFFCSRDKKYPNGFRTNR--GTKAGYWKA--TGKDRKITSRSSSIIGYRKTLVFYK 116

Query:   126 KDLPKNQATNYVLCRLRKNQPIGQDKKYSSAKKRKLNDIQHNSNQSEQVTDTEVERVLTH 185
                P    +N+++   R       D    S   +    +   + ++E  T+T++ ++ + 
Sbjct:   117 GRAPLGDRSNWIMHEYRL---CDDDTSQGSQNLKGAFVLCRVAMKNEIKTNTKIRKIPSE 173

Query:   186 Q 186
             Q
Sbjct:   174 Q 174

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2122219 NAC076 "NAC domain containing protein 76" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 59/223 (26%), Positives = 98/223 (43%)

Query:     8 LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
             +P GF+F P+DEELV +YL+KKV+   I L    IRD +LY  +P   WD      +  +
Sbjct:    10 VPPGFRFHPTDEELVGYYLRKKVASQKIDLD--VIRDIDLYRIEP---WDLQESCRIGYE 64

Query:    68 E--DLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVXXXXXXXXXXXXXFRYEK 125
             E  + YFF+   KK   G+R +R   +  G W+    G+D                 + K
Sbjct:    65 ERNEWYFFSHKDKKYPTGTRTNR--ATMAGFWKA--TGRDKAVYDKSKLIGMRKTLVFYK 120

Query:   126 KDLPKNQATNYVLCRLR----KNQPIGQDKKYSSAKKRKLNDIQHNSNQSEQVTDTEVER 181
                P  Q T++++   R    +N P  Q++ +   +  K   +   +  +E  + +    
Sbjct:   121 GRAPNGQKTDWIMHEYRLESDENAP-PQEEGWVVCRAFKKKPMTGQAKNTETWSSSYFYD 179

Query:   182 VL---THQENQQQNYVHYQEVSCSSTGMMNEQSLSG---GMGF 218
              L        +  NYV  Q+ +  +  +M +Q L G   G+ F
Sbjct:   180 ELPSGVRSVTEPLNYVSKQKQNVFAQDLMFKQELEGSDIGLNF 222

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2167923 NAC101 "NAC-domain protein 101" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 55/207 (26%), Positives = 95/207 (45%)

Query:     3 EHIPFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEY-FIRDCNLYETKPSKIWDSHG- 60
             E +  +P G++F P+DEELV++YLK KV+    P  +   I+D +LY+ +P   WD    
Sbjct:     2 ESLAHIPPGYRFHPTDEELVDYYLKNKVA---FPGMQVDVIKDVDLYKIEP---WDIQEL 55

Query:    61 -GPFLNADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVXXXXXXXXXXXX 119
              G     + + YFF+   KK   G+R +R  GS  G W+    G+D              
Sbjct:    56 CGRGTGEEREWYFFSHKDKKYPTGTRTNRATGS--GFWKA--TGRDKAIYSKQELVGMRK 111

Query:   120 XFRYEKKDLPKNQATNYVLCRLR----KNQPIGQDK-KYSSAKKRKLNDIQHNSNQSEQV 174
                + K   P  Q +++++   R    +N P  ++      A K+KL  + +N+ ++   
Sbjct:   112 TLVFYKGRAPNGQKSDWIMHEYRLETDENGPPHEEGWVVCRAFKKKLTTMNYNNPRTMMG 171

Query:   175 TDTEVE-RVLTHQENQQQ-NYVHYQEV 199
             + +  E    T Q +    NY H  ++
Sbjct:   172 SSSGQESNWFTQQMDVGNGNYYHLPDL 198

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP;RCA

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2060979 VND1 "vascular related NAC-domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 56/216 (25%), Positives = 95/216 (43%)

Query:     8 LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
             +P GF+F P+DEELV +YL+KK++   I L    IRD +LY  +P   WD      +  +
Sbjct:     9 VPPGFRFHPTDEELVGYYLRKKIASQKIDLD--VIRDIDLYRIEP---WDLQEQCRIGYE 63

Query:    68 E--DLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVXXXXXXXXXXXXXFRYEK 125
             E  + YFF+   KK   G+R +R   +  G W+    G+D                 + K
Sbjct:    64 EQNEWYFFSHKDKKYPTGTRTNR--ATMAGFWKA--TGRDKAVYDKTKLIGMRKTLVFYK 119

Query:   126 KDLPKNQATNYVLCRLR----KNQPIGQDKKY---SSAKKRKLNDIQHNSNQSEQVTDTE 178
                P  + +++++   R    +N P  Q++ +    + KKR     ++    S      E
Sbjct:   120 GRAPNGKKSDWIMHEYRLESDENAP-PQEEGWVVCRAFKKRATGQAKNTETWSSSYFYDE 178

Query:   179 VERVLTHQENQQQNYVHYQEVSCSSTGMMNEQSLSG 214
             V     +      +Y+  Q+ +    G+M +Q L G
Sbjct:   179 VAPNGVNSVMDPIDYISKQQHNIFGKGLMCKQELEG 214

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	9e-27

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score = 99.6 bits (249), Expect = 9e-27
 Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 11/133 (8%)

Query: 8   LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
           LP GF+F P+DEELV +YLK+KV G  +PL +  I + ++Y+ +P   WD   G     D
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLD-VIPEVDIYKFEP---WDLPDGKAKGGD 56

Query: 68  EDLYFFTQLKKKSSKGSRIDRKVGSSGGAW--QGEDAGKDIVSGQSKIKIGSKKQFRYEK 125
            + YFF+   +K   GSR +R  GS  G W   G+D  K ++S   ++ +G KK   + K
Sbjct: 57  REWYFFSPRDRKYPNGSRTNRATGS--GYWKATGKD--KPVLSKGGEV-VGMKKTLVFYK 111

Query: 126 KDLPKNQATNYVL 138
              PK + T++V+
Sbjct: 112 GRAPKGEKTDWVM 124

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=5.7e-43  Score=279.83  Aligned_cols=129  Identities=35%  Similarity=0.641  Sum_probs=94.9

Q ss_pred             CCCCceeCCChHHHHHHHHHHHHhCCCCCcccceeeeccCCCCCCCcccccCCCCCCCCCCcEEEEecccccCCCCCccc
Q 041697            8 LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNADEDLYFFTQLKKKSSKGSRID   87 (230)
Q Consensus         8 LPpGfRF~PTDeELI~~YL~~Ki~g~~~p~~~~vI~~~DvY~~ePw~L~~~~~~~~~~~~~~wYFFs~r~~k~~~g~R~~   87 (230)
                      |||||||+|||+|||.+||++|+.|.++|.. .+|+++|||+++||+|+..+.    .++.+||||++++++++++.|.+
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~-~~i~~~Diy~~~P~~L~~~~~----~~~~~~yFF~~~~~~~~~~~r~~   75 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCE-DVIHDVDIYSAHPWELPAKFK----GGDEEWYFFSPRKKKYPNGGRPN   75 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS--CHSEE--GGGS-GGGCHHHSS----S-SSEEEEEEE----------S-
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcc-cceeecccCccChHHhhhhcc----CCCceEEEEEecccccCCccccc
Confidence            8999999999999999999999999987774 479999999999999995322    35679999999999999999999


Q ss_pred             cccCCCCceeeeccCCceEEeCCCceEEEEEEEeecCcCCCCCCCCCCeEEEEEEeC
Q 041697           88 RKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEKKDLPKNQATNYVLCRLRKN  144 (230)
Q Consensus        88 R~v~~~~G~Wk~~g~~k~I~~~~~g~~iG~Kk~l~fy~~~~~~~~kt~WvM~Ey~l~  144 (230)
                      |+++  +|+||++|+.++|.+. ++.+||+|++|+||.+..+++.+|+|+|+||+|.
T Consensus        76 R~~~--~G~Wk~~g~~~~i~~~-~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   76 RVTG--GGYWKSTGKEKPIKDP-GGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEET--TEEEEEECEEEEEEE--TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             cccc--ceEEeecccccccccc-cceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            9888  9999999999999986 5689999999999988888889999999999983

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	230
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		3e-11
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		3e-08
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		4e-08

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Query: 8   LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
           LP GF+F P+D+ELVEHYL +K +G  +P+    I + +LY+  P   WD        A 
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVP--IIAEVDLYKFDP---WDLPERALFGAR 69
Query: 68  EDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIV 107
           E  YFFT   +K   GSR +R  G+  G W+   A K + 
Sbjct: 70  E-WYFFTPRDRKYPNGSRPNRAAGN--GYWKATGADKPVA 106

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 8   LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
           LP GF+F P+DEEL+  YL +K +G    L    I + +LY+  P  + +      L  +
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLPNKA----LFGE 70
Query: 68  EDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVXXXXXXXXXXXXXFRYEKKD 127
           ++ YFF+   +K   GSR +R  GS  G W+     K I              F   K  
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNRVAGS--GYWKATGTDKIISTEGQRVGIKKALVFYIGKA- 127
Query: 128 LPKNQATNYVLCRLRKNQP 146
            PK   TN+++   R  +P
Sbjct: 128 -PKGTKTNWIMHEYRLIEP 145

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 8   LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
           LP GF+F P+DEEL+  YL +K +G    L    I + +LY+  P  + +      L  +
Sbjct: 20  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLPNKA----LFGE 73
Query: 68  EDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVXXXXXXXXXXXXXFRYEKKD 127
           ++ YFF+   +K   GSR +R  GS  G W+     K I              F   K  
Sbjct: 74  KEWYFFSPRDRKYPNGSRPNRVAGS--GYWKATGTDKIISTEGQRVGIKKALVFYIGKA- 130
Query: 128 LPKNQATNYVLCRLRKNQP 146
            PK   TN+++   R  +P
Sbjct: 131 -PKGTKTNWIMHEYRLIEP 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
1ut7_A	171	No apical meristem protein; transcription regulati	1e-20
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	2e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score = 84.7 bits (210), Expect = 1e-20
 Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 32/158 (20%)

Query: 8   LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
           LP GF+F P+DEEL+  YL +K +G    L    I + +LY+  P   W          +
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDP---WVLPNKALFG-E 70

Query: 68  EDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKK-------- 119
           ++ YFF+   +K   GSR +R  GS  G W+    G D +      ++G KK        
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNRVAGS--GYWKA--TGTDKIISTEGQRVGIKKALVFYIGK 126

Query: 120 ------------QFRYEKKDLPKNQAT--NYVLCRLRK 143
                       ++R  +           ++VLCR+ K
Sbjct: 127 APKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYK 164

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score = 83.9 bits (208), Expect = 2e-20
 Identities = 47/163 (28%), Positives = 66/163 (40%), Gaps = 37/163 (22%)

Query: 8   LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
           LP GF+F P+D+ELVEHYL +K +G  +P+    I + +LY+  P   WD          
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVP--IIAEVDLYKFDP---WDLPERALFG-A 68

Query: 68  EDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKK-------- 119
            + YFFT   +K   GSR +R  G+  G W+    G D         +G KK        
Sbjct: 69  REWYFFTPRDRKYPNGSRPNRAAGN--GYWKA--TGADKPVAPRGRTLGIKKALVFYAGK 124

Query: 120 ------------QFRYEKKDLPKNQATN-------YVLCRLRK 143
                       ++R          A         +VLCRL  
Sbjct: 125 APRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 3e-06
 Identities = 32/227 (14%), Positives = 65/227 (28%), Gaps = 70/227 (30%)

Query: 18  DEELVEHYLKKKVSGTLIP-LAEYFIRDCNLYETKPSKIWDSHGGPFLNADEDLYFFTQL 76
           D E  EH  + K    ++    + F+ + +  +     + D         + D      +
Sbjct: 8   DFETGEHQYQYK---DILSVFEDAFVDNFDCKD-----VQDMPKSILSKEEID-----HI 54

Query: 77  KKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEKKDLPKNQATNY 136
                  S   R        W      +++V           ++F      + +    NY
Sbjct: 55  IMSKDAVSGTLRLF------WTLLSKQEEMV-----------QKF------VEEVLRINY 91

Query: 137 --VLCRLRK--NQPIGQDKKYSSAKKRKLNDIQ----HNSNQSEQVTDTEVERVLTHQEN 188
             ++  ++    QP    + Y   + R  ND Q    +N ++ +     ++ + L   E 
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY--LKLRQAL--LEL 147

Query: 189 QQQNYV--HYQEVSCSSTGMMNEQSLSGGMG---FASSVIEHSSVTD 230
           +    V            G+        G G    A  V     V  
Sbjct: 148 RPAKNVLID---------GV-------LGSGKTWVALDVCLSYKVQC 178

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 33/204 (16%), Positives = 55/204 (26%), Gaps = 80/204 (39%)

Query: 10  HGFQFR---PSDEE------LVEHY--LKKKVSGTLIPLAE--YFIRDCN-----LYETK 51
                      + E      +V+HY   K   S  LIP     YF    +     L   +
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF---YSHIGHHLKNIE 485

Query: 52  PSKIWDSHGGPFLNADEDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSGQS 111
             +        FL    D  F             +++K+     AW    +  + +    
Sbjct: 486 HPERMTLFRMVFL----DFRF-------------LEQKIRHDSTAWNASGSILNTLQ--- 525

Query: 112 KIKIGSKKQFR-YEKKDLPKNQATNYVLCRLRKNQPIGQDKKYSSAKKRKLNDIQHNSNQ 170
                   Q + Y+           Y+      N P     KY     R +N I     +
Sbjct: 526 --------QLKFYKP----------YI----CDNDP-----KYE----RLVNAILDFLPK 554

Query: 171 SEQV------TDTEVERVLTHQEN 188
            E+       TD  +   L  ++ 
Sbjct: 555 IEENLICSKYTDL-LRIALMAEDE 577

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=5.4e-51  Score=341.99  Aligned_cols=146  Identities=31%  Similarity=0.525  Sum_probs=126.8

Q ss_pred             CCCCCCCCCceeCCChHHHHHHHHHHHHhCCCCCcccceeeeccCCCCCCCcccccCCCCCCCCCCcEEEEecccccCCC
Q 041697            3 EHIPFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNADEDLYFFTQLKKKSSK   82 (230)
Q Consensus         3 ~~~~~LPpGfRF~PTDeELI~~YL~~Ki~g~~~p~~~~vI~~~DvY~~ePw~L~~~~~~~~~~~~~~wYFFs~r~~k~~~   82 (230)
                      +....|||||||+|||||||.|||++|+.|.++|..  +|+++|||++|||+||+..    ..++++||||+++++|+++
T Consensus        10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~--~I~evDvy~~~Pw~Lp~~~----~~g~~ewYFFs~r~~ky~~   83 (174)
T 3ulx_A           10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVP--IIAEVDLYKFDPWDLPERA----LFGAREWYFFTPRDRKYPN   83 (174)
T ss_dssp             CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSS--CCEECCGGGSCGGGSGGGC----SSCSSEEEEEEECCC----
T ss_pred             ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcC--eeeecccccCCchhhhhhh----ccCCceEEEEeccccccCC
Confidence            445689999999999999999999999999988764  9999999999999999863    2457899999999999999


Q ss_pred             CCccccccCCCCceeeeccCCceEEeCCCceEEEEEEEeecCcCCCCCCCCCCeEEEEEEeCCC--------------CC
Q 041697           83 GSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEKKDLPKNQATNYVLCRLRKNQP--------------IG  148 (230)
Q Consensus        83 g~R~~R~v~~~~G~Wk~~g~~k~I~~~~~g~~iG~Kk~l~fy~~~~~~~~kt~WvM~Ey~l~~~--------------~~  148 (230)
                      |.|++|+++  +|+||++|++++|...  |.+||+|++|+||.+++|++.+|+||||||+|...              .+
T Consensus        84 g~R~nR~t~--~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~  159 (174)
T 3ulx_A           84 GSRPNRAAG--NGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDD  159 (174)
T ss_dssp             -CCSCEEET--TEEEEECSCCEEECCS--SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSS
T ss_pred             CCCceeecC--CceEccCCCCcEEeeC--CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCC
Confidence            999999999  9999999999999864  57999999999999999999999999999999754              24


Q ss_pred             CCceeeeecc
Q 041697          149 QDKKYSSAKK  158 (230)
Q Consensus       149 ~~l~~~~~kk  158 (230)
                      ++||||..|+
T Consensus       160 wVlCrvf~K~  169 (174)
T 3ulx_A          160 WVLCRLYNKK  169 (174)
T ss_dssp             EEEEEEEESC
T ss_pred             EEEEEEEEcC
Confidence            7899998775

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=3.3e-50  Score=336.54  Aligned_cols=145  Identities=30%  Similarity=0.483  Sum_probs=124.6

Q ss_pred             CCCCCCCceeCCChHHHHHHHHHHHHhCCCCCcccceeeeccCCCCCCCcccccCCCCCCCCCCcEEEEecccccCCCCC
Q 041697            5 IPFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNADEDLYFFTQLKKKSSKGS   84 (230)
Q Consensus         5 ~~~LPpGfRF~PTDeELI~~YL~~Ki~g~~~p~~~~vI~~~DvY~~ePw~L~~~~~~~~~~~~~~wYFFs~r~~k~~~g~   84 (230)
                      ...|||||||+|||||||.|||++|+.|.++|.+  +|+++|||.+|||+|++..    ..++++||||+++++|+++|.
T Consensus        14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~--~I~e~Diy~~~Pw~Lp~~~----~~g~~ewyFFs~r~~k~~~g~   87 (171)
T 1ut7_A           14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLPNKA----LFGEKEWYFFSPRDRKYPNGS   87 (171)
T ss_dssp             SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSC--CSEECCGGGSCGGGHHHHS----SSCSSEEEEEEECCC------
T ss_pred             ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCC--eEeecccccCChhHhhchh----hcCCccEEEEeccccccCCCC
Confidence            5689999999999999999999999999988754  8999999999999999863    246789999999999999999


Q ss_pred             ccccccCCCCceeeeccCCceEEeCCCceEEEEEEEeecCcCCCCCCCCCCeEEEEEEeCCCC---------CCCceeee
Q 041697           85 RIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEKKDLPKNQATNYVLCRLRKNQPI---------GQDKKYSS  155 (230)
Q Consensus        85 R~~R~v~~~~G~Wk~~g~~k~I~~~~~g~~iG~Kk~l~fy~~~~~~~~kt~WvM~Ey~l~~~~---------~~~l~~~~  155 (230)
                      |++|+|+  +|+||++|++++|...  +.+||+|++|+||.+++|++.+|+||||||++....         +++||+|.
T Consensus        88 R~~R~t~--~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~  163 (171)
T 1ut7_A           88 RPNRVAG--SGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY  163 (171)
T ss_dssp             -CCEEET--TEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEE
T ss_pred             cccccCC--CCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEE
Confidence            9999999  9999999999999974  489999999999999999999999999999998653         57899998


Q ss_pred             eccc
Q 041697          156 AKKR  159 (230)
Q Consensus       156 ~kkr  159 (230)
                      .|++
T Consensus       164 ~k~~  167 (171)
T 1ut7_A          164 KKQS  167 (171)
T ss_dssp             ECC-
T ss_pred             EcCC
Confidence            7753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	230
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	6e-25

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 94.3 bits (234), Expect = 6e-25
 Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 32/160 (20%)

Query: 8   LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
           LP GF+F P+DEEL+  YL +K +G     +   I + +LY+  P   W       L  +
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGY--DFSLQLIAEIDLYKFDP---WV-LPNKALFGE 70

Query: 68  EDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEKKD 127
           ++ YFF+   +K   GSR +R  G   G W+     K I +     ++G KK   +    
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNRVAG--SGYWKATGTDKIISTE--GQRVGIKKALVFYIGK 126

Query: 128 LPKNQATN----------------------YVLCRLRKNQ 145
            PK   TN                      +VLCR+ K Q
Sbjct: 127 APKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.6e-47  Score=315.12  Aligned_cols=144  Identities=29%  Similarity=0.467  Sum_probs=122.0

Q ss_pred             CCCCCCCceeCCChHHHHHHHHHHHHhCCCCCcccceeeeccCCCCCCCcccccCCCCCCCCCCcEEEEecccccCCCCC
Q 041697            5 IPFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNADEDLYFFTQLKKKSSKGS   84 (230)
Q Consensus         5 ~~~LPpGfRF~PTDeELI~~YL~~Ki~g~~~p~~~~vI~~~DvY~~ePw~L~~~~~~~~~~~~~~wYFFs~r~~k~~~g~   84 (230)
                      ..+|||||||+|||||||.|||++|+.|.++|.+  +|+++|||++|||+|++.+.    .++++||||+++.++++++.
T Consensus        14 ~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~--~I~~~Dvy~~~Pw~Lp~~~~----~~~~~wyFft~~~~k~~~g~   87 (166)
T d1ut7a_          14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLPNKAL----FGEKEWYFFSPRDRKYPNGS   87 (166)
T ss_dssp             SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSC--CSEECCGGGSCGGGHHHHSS----SCSSEEEEEEECCC------
T ss_pred             cccCCCccccCCCcHHHHHHHHHHHHcCCCCCcc--cceeccCCcCChhhccchhc----cCcceEEEEeeeccccCCCC
Confidence            4579999999999999999999999999888764  89999999999999997632    45788999999999999999


Q ss_pred             ccccccCCCCceeeeccCCceEEeCCCceEEEEEEEeecCcCCCCCCCCCCeEEEEEEeCCCC---------CCCceeee
Q 041697           85 RIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEKKDLPKNQATNYVLCRLRKNQPI---------GQDKKYSS  155 (230)
Q Consensus        85 R~~R~v~~~~G~Wk~~g~~k~I~~~~~g~~iG~Kk~l~fy~~~~~~~~kt~WvM~Ey~l~~~~---------~~~l~~~~  155 (230)
                      |.+|+++  +|+||++|+++.|.++  |.+||+|++|+||.++.+++.+|+|+|+||++....         +++||++.
T Consensus        88 r~~R~~g--~G~Wk~~g~~~~i~~~--g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~  163 (166)
T d1ut7a_          88 RPNRVAG--SGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY  163 (166)
T ss_dssp             -CCEEET--TEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEE
T ss_pred             ccccccC--CCEecccCCCceEecC--CcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEE
Confidence            9999999  9999999999988763  579999999999999999999999999999997654         35799996


Q ss_pred             ecc
Q 041697          156 AKK  158 (230)
Q Consensus       156 ~kk  158 (230)
                      .||
T Consensus       164 ~Kk  166 (166)
T d1ut7a_         164 KKQ  166 (166)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            553