Citrus Sinensis ID: 041698
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 355 | 2.2.26 [Sep-21-2011] | |||||||
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 1.0 | 0.678 | 0.826 | 1e-176 | |
| P23586 | 522 | Sugar transport protein 1 | yes | no | 0.997 | 0.678 | 0.814 | 1e-174 | |
| O65413 | 508 | Sugar transport protein 1 | no | no | 0.994 | 0.694 | 0.780 | 1e-163 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.980 | 0.677 | 0.650 | 1e-132 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.946 | 0.649 | 0.642 | 1e-126 | |
| Q39228 | 514 | Sugar transport protein 4 | no | no | 0.963 | 0.665 | 0.618 | 1e-126 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.946 | 0.653 | 0.626 | 1e-126 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.988 | 0.667 | 0.589 | 1e-121 | |
| Q07423 | 510 | Hexose carrier protein HE | N/A | no | 0.971 | 0.676 | 0.583 | 1e-113 | |
| Q9SBA7 | 507 | Sugar transport protein 8 | no | no | 0.963 | 0.674 | 0.563 | 1e-111 |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 617 bits (1590), Expect = e-176, Method: Compositional matrix adjust.
Identities = 295/357 (82%), Positives = 332/357 (92%), Gaps = 2/357 (0%)
Query: 1 MPAVGGFDK--GNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFF 58
MPAVGG GN K YPGNLT YV VTC+VAAMGGLIFGYDIGISGGVTSM SFLKKFF
Sbjct: 1 MPAVGGIPPSGGNRKVYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFF 60
Query: 59 PSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGI 118
PSVYRK++A+ES+NQYCQYDS+TLTMFTSSLYLAAL++SLVAS +TR+FGRKLSM FGG+
Sbjct: 61 PSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGV 120
Query: 119 LFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSI 178
LF AGA++NG A+A+WMLI+GR+LLGFGIGFANQSVPLYLSEMAPY++RGALNIGFQLSI
Sbjct: 121 LFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 180
Query: 179 TVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEA 238
T+GIL+ANVLNYFF KI GGWGWRLSLGGAMVPALIITVGS++LPDTPNS+IERG+HEEA
Sbjct: 181 TIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHEEA 240
Query: 239 REELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTG 298
R L++VRGV DV+EEF DLV ASE S++VEHPW+NLLQ+KYRPHL+MA+ IPFFQQ TG
Sbjct: 241 RAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTG 300
Query: 299 INVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
INVIMFYAPVLF+TIGFGSDA+LMSAVITG+VNV ATMVSIYGVDKWGRRFLFLEGG
Sbjct: 301 INVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGG 357
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Ricinus communis (taxid: 3988) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 609 bits (1571), Expect = e-174, Method: Compositional matrix adjust.
Identities = 290/356 (81%), Positives = 331/356 (92%), Gaps = 2/356 (0%)
Query: 1 MPAVGGFDKGNG-KEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFP 59
MPA GGF G+G K YPG LTP+VL TC+VAAMGGLIFGYDIGISGGVTSMPSFLK+FFP
Sbjct: 1 MPA-GGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFP 59
Query: 60 SVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGIL 119
SVYRKQQ + STNQYCQYDS TLTMFTSSLYLAAL+SSLVAS VTR+FGR+LSM FGGIL
Sbjct: 60 SVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGIL 119
Query: 120 FLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSIT 179
F AGAL+NGFA+ +WMLIVGR+LLGFGIGFANQ+VPLYLSEMAPY++RGALNIGFQLSIT
Sbjct: 120 FCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSIT 179
Query: 180 VGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAR 239
+GIL+A VLNYFF KI GGWGWRLSLGGA+VPALIIT+GS++LPDTPNS+IERG+HEEA+
Sbjct: 180 IGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAK 239
Query: 240 EELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGI 299
+LR++RGV+DV +EF+DLVAAS+ S+ +EHPW+NLL++KYRPHLTMAV+IPFFQQ TGI
Sbjct: 240 TKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGI 299
Query: 300 NVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
NVIMFYAPVLFNTIGF +DASLMSAV+TG VNV AT+VSIYGVD+WGRRFLFLEGG
Sbjct: 300 NVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGG 355
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Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|O65413|STP12_ARATH Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 574 bits (1480), Expect = e-163, Method: Compositional matrix adjust.
Identities = 277/355 (78%), Positives = 316/355 (89%), Gaps = 2/355 (0%)
Query: 1 MPAVGGFDKGNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPS 60
MP+VG KEYPG LT YV VTCIVAAMGGLIFGYDIGISGGVT+M SF +KFFPS
Sbjct: 1 MPSVGIVIGDGKKEYPGKLTLYVTVTCIVAAMGGLIFGYDIGISGGVTTMDSFQQKFFPS 60
Query: 61 VYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILF 120
VY KQ+ + +NQYC++DS +LT+FTSSLYLAAL SSLVAS VTRQFGRK+SM GG+LF
Sbjct: 61 VYEKQKKDHDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYVTRQFGRKISMLLGGVLF 120
Query: 121 LAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITV 180
AGALLNGFA A+WMLIVGRLLLGFGIGF NQSVPLYLSEMAPY++RGALNIGFQLSIT+
Sbjct: 121 CAGALLNGFATAVWMLIVGRLLLGFGIGFTNQSVPLYLSEMAPYKYRGALNIGFQLSITI 180
Query: 181 GILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEARE 240
GIL+ANVLN+FF+KI WGWRLSLGGA+VPALIITVGS+ILPDTPNS+IERG+ A
Sbjct: 181 GILVANVLNFFFSKIS--WGWRLSLGGAVVPALIITVGSLILPDTPNSMIERGQFRLAEA 238
Query: 241 ELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGIN 300
+LRK+RGV+D+++E NDL+ ASEAS+ VEHPW+NLLQ+KYRPHLTMA+LIP FQQ TGIN
Sbjct: 239 KLRKIRGVDDIDDEINDLIIASEASKLVEHPWRNLLQRKYRPHLTMAILIPAFQQLTGIN 298
Query: 301 VIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
VIMFYAPVLF TIGFGSDA+L+SAV+TG+VNV AT+VSIYGVDKWGRRFLFLEGG
Sbjct: 299 VIMFYAPVLFQTIGFGSDAALISAVVTGLVNVGATVVSIYGVDKWGRRFLFLEGG 353
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 470 bits (1210), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/349 (65%), Positives = 280/349 (80%), Gaps = 1/349 (0%)
Query: 8 DKGNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQA 67
+ G+G +Y G +T +V++TCIVAAMGGL+FGYDIGISGGV SM FL KFFP V R+ Q
Sbjct: 9 ESGHGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQMQN 68
Query: 68 NES-TNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALL 126
+YC+YD+E LT+FTSSLYLAAL +S +AS +TR FGRK+SM G + FL+GALL
Sbjct: 69 KRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALL 128
Query: 127 NGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIAN 186
NG A + MLI+GRL LG G+GFANQSVPLYLSEMAP + RGALNIGFQL+IT+GIL AN
Sbjct: 129 NGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAAN 188
Query: 187 VLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVR 246
++NY K+ G GWRLSLG A VPA+++ VG LPDTPNSI+ERG E+A+E L+K+R
Sbjct: 189 IVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKAKEMLQKIR 248
Query: 247 GVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYA 306
G +VE EFN+L A EA+++V+HPW N++Q +YRP LT IPFFQQ TGINVIMFYA
Sbjct: 249 GTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYA 308
Query: 307 PVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
PVLF TIGFG+DASL+SAVITG+VNV++T+VSIY VDK+GRR LFL+GG
Sbjct: 309 PVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGG 357
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/338 (64%), Positives = 275/338 (81%), Gaps = 2/338 (0%)
Query: 19 LTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYD 78
+T +V++TCIVAAMGGL+FGYD+GISGGVTSM FL KFFP V ++ YC++D
Sbjct: 21 VTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFD 80
Query: 79 SETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIV 138
++ L +FTSSLYLAAL SS VAS VTR++GRK+SMF GG+ FL G+L N FA + MLIV
Sbjct: 81 NQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIV 140
Query: 139 GRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGG 198
GRLLLG G+GFANQS P+YLSEMAP + RGALNIGFQ++IT+GILIAN++NY +++
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGTSQMAKN 200
Query: 199 WGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDL 258
GWR+SLG A VPA+I+ +GS +LPDTPNS++ERG++E+ARE L+K+RG ++V+EEF DL
Sbjct: 201 -GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQAREMLQKIRGADNVDEEFQDL 259
Query: 259 VAASEASRQVEHPWKNLLQK-KYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGS 317
A EA+++V++PWKN+ Q+ KYRP L IPFFQQ TGINVIMFYAPVLF T+GF
Sbjct: 260 CDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGFAD 319
Query: 318 DASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
DASL+SAVITG VNVV+T+VSIY VD++GRR LFLEGG
Sbjct: 320 DASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGG 357
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1159), Expect = e-126, Method: Compositional matrix adjust.
Identities = 212/343 (61%), Positives = 272/343 (79%), Gaps = 1/343 (0%)
Query: 13 KEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTN 72
+ Y LTP V VTC + A GGLIFGYD+GISGGVTSM FL++FFP VY+K ++ N
Sbjct: 13 RNYNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPYVYKKMKSAHE-N 71
Query: 73 QYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQA 132
+YC++DS+ LT+FTSSLY+AAL+SSL AS +TR FGRK SMF GG F G+ NGFAQ
Sbjct: 72 EYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFIGSAFNGFAQN 131
Query: 133 IWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFF 192
I ML++GR+LLGFG+GFANQSVP+YLSEMAP RGA N GFQ++I GI++A ++NYF
Sbjct: 132 IAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGIVVATIINYFT 191
Query: 193 NKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVE 252
++ G GWR+SLG A VPA++I +G++ILPDTPNS+IERG EEA+E L+ +RG N+V+
Sbjct: 192 AQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYTEEAKEMLQSIRGTNEVD 251
Query: 253 EEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT 312
EEF DL+ ASE S+QV+HPWKN++ +YRP L M IPFFQQ TGINVI FYAPVLF T
Sbjct: 252 EEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGINVITFYAPVLFQT 311
Query: 313 IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
+GFGS ASL+SA++TGI+ ++ T VS++ VD++GRR LFL+GG
Sbjct: 312 LGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGG 354
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1159), Expect = e-126, Method: Compositional matrix adjust.
Identities = 211/337 (62%), Positives = 277/337 (82%), Gaps = 1/337 (0%)
Query: 19 LTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYD 78
+T +V++TCIVAAMGGL+FGYD+GISGGVTSM FL KFFP V + + + YC++D
Sbjct: 21 VTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFD 80
Query: 79 SETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIV 138
++ L +FTSSLYLAAL++S +AS +TR+ GRK+SMF GG+ FL GAL N FA + MLI+
Sbjct: 81 NQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLII 140
Query: 139 GRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGG 198
GRLLLG G+GFANQS P+YLSEMAP + RGALNIGFQ++IT+GIL+AN++NY +K+
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTSKM-AQ 199
Query: 199 WGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDL 258
GWR+SLG A VPA+++ +GS ILPDTPNS++ERG++EEA++ L+K+RG ++V+ EF DL
Sbjct: 200 HGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAKQMLKKIRGADNVDHEFQDL 259
Query: 259 VAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSD 318
+ A EA+++VE+PWKN+++ KYRP L IPFFQQ TGINVIMFYAPVLF T+GFG D
Sbjct: 260 IDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGFGDD 319
Query: 319 ASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
A+LMSAVITG+VN+++T VSIY VD++GRR LFLEGG
Sbjct: 320 AALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGG 356
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/353 (58%), Positives = 274/353 (77%), Gaps = 2/353 (0%)
Query: 5 GGF-DKGNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYR 63
GGF NG E+ +TP V+++CI+AA GGL+FGYD+G+SGGVTSMP FL+KFFP VYR
Sbjct: 4 GGFATSANGVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYR 63
Query: 64 KQQAN-ESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLA 122
K A + + YC+YD++ L +FTSSLYLA L ++ AS TR GR+L+M G+ F+
Sbjct: 64 KVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFII 123
Query: 123 GALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGI 182
G LN AQ + MLI GR+LLG G+GFANQ+VPL+LSE+AP R RG LNI FQL++T+GI
Sbjct: 124 GVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGI 183
Query: 183 LIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREEL 242
L AN++NY KI GGWGWRLSLG A +PAL++TVG++++ +TPNS++ERGR +E + L
Sbjct: 184 LFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGKAVL 243
Query: 243 RKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVI 302
R++RG ++VE EF DL+ AS +++V+HP++NLLQ++ RP L +AV + FQQ TGIN I
Sbjct: 244 RRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAI 303
Query: 303 MFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
MFYAPVLF+T+GFGSDASL SAV+TG VNV++T+VSIY VDK GRR L LE G
Sbjct: 304 MFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAG 356
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/346 (58%), Positives = 263/346 (76%), Gaps = 1/346 (0%)
Query: 11 NGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANES 70
G +Y G +T +V ++C++AAMGG+IFGYDIG+SGGVTSM FLKKFFP VYRK + +
Sbjct: 10 EGGQYNGRMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDVYRKMKEDTE 69
Query: 71 TNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA 130
+ YC++DS+ LT FTSSLY+A L++S AS VTR FGRK S+ GG +FLA A L G A
Sbjct: 70 ISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLAXAALGGAA 129
Query: 131 QAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNY 190
++MLI GR+LLG G+GFANQ+VPLYLSEMAP R+RGA+N GFQ S+ +G L AN++NY
Sbjct: 130 VNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALSANLINY 189
Query: 191 FFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGR-HEEAREELRKVRGVN 249
KI GGWGWR+SL A VPA I+T G++ LP+TPNS+I+R HE A+ L++VRG
Sbjct: 190 GTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHERAKLMLQRVRGTT 249
Query: 250 DVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL 309
DV+ E +DL+ AS SR ++HP+KN++++KYRP L MAV IPFFQQ TGINVI FYAP+L
Sbjct: 250 DVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVTGINVIAFYAPIL 309
Query: 310 FNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
F TIG ASL+S+++TG+V +T +S+ VDK GRR LF+ GG
Sbjct: 310 FRTIGLEESASLLSSIVTGLVGSASTFISMLIVDKLGRRALFIFGG 355
|
Active uptake of hexoses. Probable glucose/hydrogen symport. Ricinus communis (taxid: 3988) |
| >sp|Q9SBA7|STP8_ARATH Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/346 (56%), Positives = 262/346 (75%), Gaps = 4/346 (1%)
Query: 9 KGNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVY-RKQQA 67
GN K + +T YV + I+AA+GGLIFGYDIGISGGVT+M FLK+FFPSVY RK+ A
Sbjct: 8 NGNSKSFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKKHA 67
Query: 68 NESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLN 127
+E N YC+YD++ L +FTSSLYLAAL++S AS + GR+ +M I FL G L
Sbjct: 68 HE--NNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLA 125
Query: 128 GFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANV 187
A I+MLI+GR+LLGFG+GF NQ+VPL+LSE+AP R RG LNI FQL +T+GILIAN+
Sbjct: 126 AGAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIANI 185
Query: 188 LNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRG 247
+NYF + IH +GWR++LGGA +PALI+ GS+++ +TP S+IER + +E +E L+K+RG
Sbjct: 186 VNYFTSSIHP-YGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKKIRG 244
Query: 248 VNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAP 307
V DV+EE+ +V A + +RQV+ P+ L++ RP + +L+ FFQQFTGIN IMFYAP
Sbjct: 245 VEDVDEEYESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLLQFFQQFTGINAIMFYAP 304
Query: 308 VLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353
VLF T+GFG+DA+L+SAV+TG +NV++T V I+ VDK GRRFL L+
Sbjct: 305 VLFQTVGFGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQ 350
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 355 | ||||||
| 68271836 | 521 | hexose transporter 1 [Juglans regia] | 1.0 | 0.681 | 0.851 | 1e-178 | |
| 68271838 | 508 | hexose transporter 2 [Juglans regia] | 1.0 | 0.698 | 0.848 | 1e-177 | |
| 215271818 | 522 | hexose transporter 1 [Hevea brasiliensis | 1.0 | 0.680 | 0.837 | 1e-176 | |
| 30349804 | 523 | monosaccharide-H+ symporter [Datisca glo | 1.0 | 0.678 | 0.825 | 1e-175 | |
| 3915039 | 523 | RecName: Full=Sugar carrier protein C gi | 1.0 | 0.678 | 0.826 | 1e-174 | |
| 255567421 | 523 | sugar transporter, putative [Ricinus com | 1.0 | 0.678 | 0.826 | 1e-174 | |
| 57283538 | 522 | monosaccharide transporter [Populus trem | 1.0 | 0.680 | 0.867 | 1e-174 | |
| 224078842 | 522 | predicted protein [Populus trichocarpa] | 1.0 | 0.680 | 0.859 | 1e-172 | |
| 21618276 | 522 | glucose transporter [Arabidopsis thalian | 0.997 | 0.678 | 0.814 | 1e-172 | |
| 15220330 | 522 | sugar transporter 1 [Arabidopsis thalian | 0.997 | 0.678 | 0.814 | 1e-172 |
| >gi|68271836|gb|AAY89231.1| hexose transporter 1 [Juglans regia] | Back alignment and taxonomy information |
|---|
Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust.
Identities = 304/357 (85%), Positives = 335/357 (93%), Gaps = 2/357 (0%)
Query: 1 MPAVGGFDKGN--GKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFF 58
MPAV G G GK YPGNLTPYV VTCIVAAMGGLIFGYDIGISGGVTSM FLKKFF
Sbjct: 1 MPAVSGVPAGGVPGKAYPGNLTPYVTVTCIVAAMGGLIFGYDIGISGGVTSMDPFLKKFF 60
Query: 59 PSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGI 118
PSVYRK+ ++STNQYCQYDSETLTMFTSSLYLAALLSS+VAS VTR+FGRKLSM FGG+
Sbjct: 61 PSVYRKKNEDKSTNQYCQYDSETLTMFTSSLYLAALLSSIVASTVTRKFGRKLSMLFGGV 120
Query: 119 LFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSI 178
LF AGA+LNGFA+A+WMLIVGR+LLGFGIGFANQSVPLYLSEMAPY++RGALNIGFQLSI
Sbjct: 121 LFCAGAILNGFAKAVWMLIVGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 180
Query: 179 TVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEA 238
T+GIL+ANVLNYFF KI GGWGWRLSLGGAMVPALIITVGS++LPDTPNS+IERG+H+EA
Sbjct: 181 TIGILVANVLNYFFAKIEGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHDEA 240
Query: 239 REELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTG 298
+E+L+++RGV+DVEEEF DLVAASEAS+ VE+PW+NLLQ+KYRPHL+MA+LIPFFQQ TG
Sbjct: 241 KEKLKRIRGVDDVEEEFCDLVAASEASQLVENPWRNLLQRKYRPHLSMAILIPFFQQLTG 300
Query: 299 INVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
INVIMFYAPVLFNTIGFGSDASLMSAVITGIVNV ATMVSIYGVDKWGRRFLFLEGG
Sbjct: 301 INVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVGATMVSIYGVDKWGRRFLFLEGG 357
|
Source: Juglans regia Species: Juglans regia Genus: Juglans Family: Juglandaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|68271838|gb|AAY89232.1| hexose transporter 2 [Juglans regia] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 303/357 (84%), Positives = 335/357 (93%), Gaps = 2/357 (0%)
Query: 1 MPAVGGFDKGN--GKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFF 58
MPAV G G GK YPGNLTPYV VTCIVAAMGGLIFGYDIGISGGVTSM FLKKFF
Sbjct: 1 MPAVSGVPAGGVPGKAYPGNLTPYVTVTCIVAAMGGLIFGYDIGISGGVTSMDPFLKKFF 60
Query: 59 PSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGI 118
PSVYRK+ ++STNQYCQYDSETLTMFTSSLYLAALLSS+VAS VTR+FGRKLSM FGG+
Sbjct: 61 PSVYRKKNEDKSTNQYCQYDSETLTMFTSSLYLAALLSSIVASTVTRKFGRKLSMLFGGV 120
Query: 119 LFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSI 178
LF AGA+LNGFA+A+WMLIVGR+LLGFGIGFANQSVPLYLSEMAPY++RGALNIGFQLSI
Sbjct: 121 LFCAGAILNGFAKAVWMLIVGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 180
Query: 179 TVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEA 238
T+GIL+ANVLNYFF KI GGWGWRLSLGGAMVPALIITVGS++LPDTPNS+IERG+H+EA
Sbjct: 181 TIGILVANVLNYFFAKIEGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHDEA 240
Query: 239 REELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTG 298
+E+L+++RGV+DVEEEF DLVAASEAS+ VE+PW+NLLQ+KYRPHL+MA+LIPFFQQ TG
Sbjct: 241 KEKLKRIRGVDDVEEEFCDLVAASEASQLVENPWRNLLQRKYRPHLSMAILIPFFQQLTG 300
Query: 299 INVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
INVIMFYAPVLFNTIGFGSDASLMSAVITGIVNV ATMVSIYGVD+WGRRFLFLEGG
Sbjct: 301 INVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVGATMVSIYGVDRWGRRFLFLEGG 357
|
Source: Juglans regia Species: Juglans regia Genus: Juglans Family: Juglandaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|215271818|emb|CAN87006.1| hexose transporter 1 [Hevea brasiliensis] gi|218047177|emb|CAR92125.1| putative hexose transporter protein [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 298/356 (83%), Positives = 335/356 (94%), Gaps = 1/356 (0%)
Query: 1 MPAVGGFDKGNGK-EYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFP 59
MPAVGG GNGK EYPGNLT YV VTCIVAAMGGLIFGYDIGISGGVTSM SFLKKFFP
Sbjct: 1 MPAVGGIATGNGKREYPGNLTLYVTVTCIVAAMGGLIFGYDIGISGGVTSMDSFLKKFFP 60
Query: 60 SVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGIL 119
SVYRK++ + ++NQYCQYDS+TLTMFTSSLYLAAL++SLVAS +TR+FGRKLSM FGG+L
Sbjct: 61 SVYRKKEEDSTSNQYCQYDSQTLTMFTSSLYLAALVASLVASWITRKFGRKLSMLFGGVL 120
Query: 120 FLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSIT 179
F AGA++NG A+A+WMLI+GR+LLGFGIGFANQSVPLYLSEMAPYR+RGALNIGFQLSIT
Sbjct: 121 FFAGAIINGLAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYRYRGALNIGFQLSIT 180
Query: 180 VGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAR 239
+GIL+ANVLNYFF KIHGGWGWRLSLGGAMVPALIITVGS++LPDTPNS+IERG++EEAR
Sbjct: 181 IGILVANVLNYFFAKIHGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQYEEAR 240
Query: 240 EELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGI 299
+L++VRGV+DV+EEFNDLV ASE S++VEHPW+NLLQ+KYRPHLTMA+ IPFFQQ TGI
Sbjct: 241 SQLKRVRGVHDVDEEFNDLVLASEESKKVEHPWRNLLQRKYRPHLTMAIAIPFFQQLTGI 300
Query: 300 NVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
NVIMFYAPVLFNTIGFG+DASLMSAVITG+VNV ATMVSIYGVDKWGRR LFLEGG
Sbjct: 301 NVIMFYAPVLFNTIGFGNDASLMSAVITGLVNVFATMVSIYGVDKWGRRLLFLEGG 356
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30349804|emb|CAD30830.1| monosaccharide-H+ symporter [Datisca glomerata] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust.
Identities = 294/356 (82%), Positives = 331/356 (92%), Gaps = 1/356 (0%)
Query: 1 MPAVGGFD-KGNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFP 59
MPAVGG G+ KEYPGNLTPYV +TCIVAAMGGLIFGYDIGISGGVTSM SFLKKFFP
Sbjct: 1 MPAVGGIVVGGSKKEYPGNLTPYVTITCIVAAMGGLIFGYDIGISGGVTSMDSFLKKFFP 60
Query: 60 SVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGIL 119
+VYRK++ + +TNQYCQYDS+TLTMFTSSLYLAALL+S+VAS +TR+FGR+LSM FGGIL
Sbjct: 61 AVYRKKELDSTTNQYCQYDSQTLTMFTSSLYLAALLASIVASTITRKFGRRLSMLFGGIL 120
Query: 120 FLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSIT 179
F AGA++NGFAQA+WMLI+GR+ LGFGIGF+NQSVPLYLSEMAPY++RGALNIGFQLSIT
Sbjct: 121 FCAGAIINGFAQAVWMLILGRMFLGFGIGFSNQSVPLYLSEMAPYKYRGALNIGFQLSIT 180
Query: 180 VGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAR 239
+GIL+ANVLNYFF KI GGWGWRLSLGGAMVPALIITVGS++LPDTPNS+IERG +EAR
Sbjct: 181 IGILVANVLNYFFAKIRGGWGWRLSLGGAMVPALIITVGSLLLPDTPNSLIERGNRDEAR 240
Query: 240 EELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGI 299
+L++VRGV+DV+EEFNDLVAASE S+QVEHPW NLL++KYRPHL MA+LIPFFQQ TGI
Sbjct: 241 SKLQRVRGVDDVDEEFNDLVAASEESKQVEHPWTNLLRRKYRPHLAMAILIPFFQQLTGI 300
Query: 300 NVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
NVIMFYAPVLFNTIGFGSDASLMSAVITG VNV T+VSIYGVDKWGRRFLFLEGG
Sbjct: 301 NVIMFYAPVLFNTIGFGSDASLMSAVITGCVNVAGTLVSIYGVDKWGRRFLFLEGG 356
|
Source: Datisca glomerata Species: Datisca glomerata Genus: Datisca Family: Datiscaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3915039|sp|Q41144.1|STC_RICCO RecName: Full=Sugar carrier protein C gi|169718|gb|AAA79761.1| sugar carrier protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 295/357 (82%), Positives = 332/357 (92%), Gaps = 2/357 (0%)
Query: 1 MPAVGGFDK--GNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFF 58
MPAVGG GN K YPGNLT YV VTC+VAAMGGLIFGYDIGISGGVTSM SFLKKFF
Sbjct: 1 MPAVGGIPPSGGNRKVYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFF 60
Query: 59 PSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGI 118
PSVYRK++A+ES+NQYCQYDS+TLTMFTSSLYLAAL++SLVAS +TR+FGRKLSM FGG+
Sbjct: 61 PSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGV 120
Query: 119 LFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSI 178
LF AGA++NG A+A+WMLI+GR+LLGFGIGFANQSVPLYLSEMAPY++RGALNIGFQLSI
Sbjct: 121 LFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 180
Query: 179 TVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEA 238
T+GIL+ANVLNYFF KI GGWGWRLSLGGAMVPALIITVGS++LPDTPNS+IERG+HEEA
Sbjct: 181 TIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHEEA 240
Query: 239 REELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTG 298
R L++VRGV DV+EEF DLV ASE S++VEHPW+NLLQ+KYRPHL+MA+ IPFFQQ TG
Sbjct: 241 RAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTG 300
Query: 299 INVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
INVIMFYAPVLF+TIGFGSDA+LMSAVITG+VNV ATMVSIYGVDKWGRRFLFLEGG
Sbjct: 301 INVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGG 357
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567421|ref|XP_002524690.1| sugar transporter, putative [Ricinus communis] gi|223536051|gb|EEF37709.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 295/357 (82%), Positives = 332/357 (92%), Gaps = 2/357 (0%)
Query: 1 MPAVGGFDK--GNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFF 58
MPAVGG GN K YPGNLT YV VTC+VAAMGGLIFGYDIGISGGVTSM SFLKKFF
Sbjct: 1 MPAVGGIPPSGGNRKVYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFF 60
Query: 59 PSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGI 118
PSVYRK++A+ES+NQYCQYDS+TLTMFTSSLYLAAL++SLVAS +TR+FGRKLSM FGG+
Sbjct: 61 PSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGV 120
Query: 119 LFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSI 178
LF AGA++NG A+A+WMLI+GR+LLGFGIGFANQSVPLYLSEMAPY++RGALNIGFQLSI
Sbjct: 121 LFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 180
Query: 179 TVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEA 238
T+GIL+ANVLNYFF KI GGWGWRLSLGGAMVPALIITVGS++LPDTPNS+IERG+HEEA
Sbjct: 181 TIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHEEA 240
Query: 239 REELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTG 298
R L++VRGV DV+EEF DLV ASE S++VEHPW+NLLQ+KYRPHL+MA+ IPFFQQ TG
Sbjct: 241 RAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTG 300
Query: 299 INVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
INVIMFYAPVLF+TIGFGSDA+LMSAVITG+VNV ATMVSIYGVDKWGRRFLFLEGG
Sbjct: 301 INVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGG 357
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|57283538|emb|CAG27609.1| monosaccharide transporter [Populus tremula x Populus tremuloides] | Back alignment and taxonomy information |
|---|
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 308/355 (86%), Positives = 340/355 (95%)
Query: 1 MPAVGGFDKGNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPS 60
MPAVG N KEYPGNLTP+V VTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPS
Sbjct: 1 MPAVGIAVGDNKKEYPGNLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPS 60
Query: 61 VYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILF 120
VYRKQQ + ++NQYCQYDS+TLTMFTSSLYLAALL+SLVAS VTR+FGRKLSM FGG+LF
Sbjct: 61 VYRKQQEDATSNQYCQYDSQTLTMFTSSLYLAALLASLVASIVTRKFGRKLSMLFGGVLF 120
Query: 121 LAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITV 180
AGA++NGFAQA+WMLI+GR+LLGFGIGFANQSVPLYLSEMAPY+FRGALNIGFQLSIT+
Sbjct: 121 CAGAIINGFAQAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKFRGALNIGFQLSITI 180
Query: 181 GILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEARE 240
GIL+ANVLNYFF KIHGGWGWRLSLGGAMVPALIITVGS++LPDTPNS+IERG+H+EARE
Sbjct: 181 GILVANVLNYFFAKIHGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHDEARE 240
Query: 241 ELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGIN 300
+LR+VRGV+DV+EEFNDLVAASEAS +VEHPW+NLLQ+KYRPH+TMAV+IPFFQQ TGIN
Sbjct: 241 KLRRVRGVDDVDEEFNDLVAASEASMKVEHPWRNLLQRKYRPHITMAVMIPFFQQLTGIN 300
Query: 301 VIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
VIMFYAPVLFNTIGFGS+ASLMSAVITG+VNVVATMVSIYGVDKWGRRFLFLEGG
Sbjct: 301 VIMFYAPVLFNTIGFGSNASLMSAVITGVVNVVATMVSIYGVDKWGRRFLFLEGG 355
|
Source: Populus tremula x Populus tremuloides Species: Populus tremula x Populus tremuloides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224078842|ref|XP_002305649.1| predicted protein [Populus trichocarpa] gi|222848613|gb|EEE86160.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 305/355 (85%), Positives = 339/355 (95%)
Query: 1 MPAVGGFDKGNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPS 60
MPAVG N KEYPGNLTP+V VTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPS
Sbjct: 1 MPAVGIAVGDNKKEYPGNLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPS 60
Query: 61 VYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILF 120
VYRKQQ ++++NQYCQYDS+TLTMFTSSLYLAALL+SLVAS VTR+FGRKLSM FGG+LF
Sbjct: 61 VYRKQQEDKTSNQYCQYDSQTLTMFTSSLYLAALLASLVASIVTRKFGRKLSMLFGGVLF 120
Query: 121 LAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITV 180
AGA++NG A+A+WMLI+GR+LLGFGIGFANQSVPLYLSEMAPY+FRGALNIGFQLSIT+
Sbjct: 121 CAGAIINGVAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKFRGALNIGFQLSITI 180
Query: 181 GILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEARE 240
GIL+ANVLNYFF KIHGGWGWRLSLGGAMVPALIITVGS++LPDTPNS+IERG+H+EARE
Sbjct: 181 GILVANVLNYFFAKIHGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHDEARE 240
Query: 241 ELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGIN 300
+LR+VRGV+DV+EEFNDLVAASEAS +VEHPW+NLLQ+KYRPH+TMAV+IP FQQ TGIN
Sbjct: 241 KLRRVRGVDDVDEEFNDLVAASEASMKVEHPWRNLLQRKYRPHITMAVMIPIFQQLTGIN 300
Query: 301 VIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
VIMFYAPVLFNTIGFGS+ASLMSAVITG+VNVVATMVSIYGVDKWGRRFLFLEGG
Sbjct: 301 VIMFYAPVLFNTIGFGSNASLMSAVITGVVNVVATMVSIYGVDKWGRRFLFLEGG 355
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21618276|gb|AAM67326.1| glucose transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 290/356 (81%), Positives = 331/356 (92%), Gaps = 2/356 (0%)
Query: 1 MPAVGGFDKGNG-KEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFP 59
MPA GGF G+G K YPG LTP+VL TC+VAAMGGLIFGYDIGISGGVTSMPSFLK+FFP
Sbjct: 1 MPA-GGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFP 59
Query: 60 SVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGIL 119
SVYRKQQ + STNQYCQYDS TLTMFTSSLYLAAL+SSLVAS VTR+FGR+LSM FGGIL
Sbjct: 60 SVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGIL 119
Query: 120 FLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSIT 179
F AGAL+NGFA+ +WMLIVGR+LLGFGIGFANQ+VPLYLSEMAPY++RGALNIGFQLSIT
Sbjct: 120 FCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSIT 179
Query: 180 VGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAR 239
+GIL+A VLNYFF KI GGWGWRLSLGGA+VPALIIT+GS++LPDTPNS+IERG+HEEA+
Sbjct: 180 IGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAK 239
Query: 240 EELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGI 299
+LR++RGV+DV +EF+DLVAAS+ S+ +EHPW+NLL++KYRPHLTMAV+IPFFQQ TGI
Sbjct: 240 TKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGI 299
Query: 300 NVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
NVIMFYAPVLFNTIGF +DASLMSAV+TG VNV AT+VSIYGVD+WGRRFLFLEGG
Sbjct: 300 NVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGG 355
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15220330|ref|NP_172592.1| sugar transporter 1 [Arabidopsis thaliana] gi|21542458|sp|P23586.2|STP1_ARATH RecName: Full=Sugar transport protein 1; AltName: Full=Glucose transporter; AltName: Full=Hexose transporter 1 gi|5734730|gb|AAD49995.1|AC007259_8 glucose transporter [Arabidopsis thaliana] gi|15809962|gb|AAL06908.1| At1g11260/T28P6_18 [Arabidopsis thaliana] gi|16604673|gb|AAL24129.1| putative glucose transporter protein [Arabidopsis thaliana] gi|22136870|gb|AAM91779.1| putative glucose transporter protein [Arabidopsis thaliana] gi|332190584|gb|AEE28705.1| sugar transporter 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 290/356 (81%), Positives = 331/356 (92%), Gaps = 2/356 (0%)
Query: 1 MPAVGGFDKGNG-KEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFP 59
MPA GGF G+G K YPG LTP+VL TC+VAAMGGLIFGYDIGISGGVTSMPSFLK+FFP
Sbjct: 1 MPA-GGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFP 59
Query: 60 SVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGIL 119
SVYRKQQ + STNQYCQYDS TLTMFTSSLYLAAL+SSLVAS VTR+FGR+LSM FGGIL
Sbjct: 60 SVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGIL 119
Query: 120 FLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSIT 179
F AGAL+NGFA+ +WMLIVGR+LLGFGIGFANQ+VPLYLSEMAPY++RGALNIGFQLSIT
Sbjct: 120 FCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSIT 179
Query: 180 VGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAR 239
+GIL+A VLNYFF KI GGWGWRLSLGGA+VPALIIT+GS++LPDTPNS+IERG+HEEA+
Sbjct: 180 IGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAK 239
Query: 240 EELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGI 299
+LR++RGV+DV +EF+DLVAAS+ S+ +EHPW+NLL++KYRPHLTMAV+IPFFQQ TGI
Sbjct: 240 TKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGI 299
Query: 300 NVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
NVIMFYAPVLFNTIGF +DASLMSAV+TG VNV AT+VSIYGVD+WGRRFLFLEGG
Sbjct: 300 NVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGG 355
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 355 | ||||||
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.997 | 0.678 | 0.735 | 4.8e-142 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.994 | 0.686 | 0.587 | 3.4e-109 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.971 | 0.671 | 0.557 | 5.8e-105 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.971 | 0.667 | 0.570 | 7.5e-105 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.985 | 0.680 | 0.549 | 7.7e-103 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.988 | 0.667 | 0.543 | 1.8e-101 | |
| TAIR|locus:2179734 | 507 | AT5G26250 [Arabidopsis thalian | 0.960 | 0.672 | 0.515 | 3.8e-94 | |
| TAIR|locus:2083003 | 507 | STP6 "sugar transporter 6" [Ar | 0.957 | 0.670 | 0.491 | 5.9e-89 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.971 | 0.684 | 0.485 | 2.5e-88 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.977 | 0.676 | 0.487 | 2.9e-87 |
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1389 (494.0 bits), Expect = 4.8e-142, P = 4.8e-142
Identities = 262/356 (73%), Positives = 300/356 (84%)
Query: 1 MPAVGGFDKGNG-KEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFP 59
MPA GGF G+G K YPG LTP+VL TC+VAAMGGLIFGYDIGISGGVTSMPSFLK+FFP
Sbjct: 1 MPA-GGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFP 59
Query: 60 SVYRKQQANESTNQYCQYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXX 119
SVYRKQQ + STNQYCQYDS TLTMFT VTR+FGR+LSM
Sbjct: 60 SVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGIL 119
Query: 120 XXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSIT 179
+WMLIVGR+LLGFGIGFANQ+VPLYLSEMAPY++RGALNIGFQLSIT
Sbjct: 120 FCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSIT 179
Query: 180 VGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAR 239
+GIL+A VLNYFF KI GGWGWRLSLGGA+VPALIIT+GS++LPDTPNS+IERG+HEEA+
Sbjct: 180 IGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAK 239
Query: 240 EELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGI 299
+LR++RGV+DV +EF+DLVAAS+ S+ +EHPW+NLL++KYRPHLTMAV+IPFFQQ TGI
Sbjct: 240 TKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGI 299
Query: 300 NVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
NVIMFYAPVLFNTIGF +DASLMSAV+TG VNV AT+VSIYGVD+WGRRFLFLEGG
Sbjct: 300 NVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGG 355
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 209/356 (58%), Positives = 258/356 (72%)
Query: 3 AVGGF--DKGNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPS 60
A G F + G+G +Y G +T +V++TCIVAAMGGL+FGYDIGISGGV SM FL KFFP
Sbjct: 2 AGGAFIDESGHGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPD 61
Query: 61 VYRKQQANESTN-QYCQYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXX 119
V R+ Q +YC+YD+E LT+FT +TR FGRK+SM
Sbjct: 62 VLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLA 121
Query: 120 XXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSIT 179
+ MLI+GRL LG G+GFANQSVPLYLSEMAP + RGALNIGFQL+IT
Sbjct: 122 FLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAIT 181
Query: 180 VGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAR 239
+GIL AN++NY K+ G GWRLSLG A VPA+++ VG LPDTPNSI+ERG E+A+
Sbjct: 182 IGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKAK 241
Query: 240 EELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGI 299
E L+K+RG +VE EFN+L A EA+++V+HPW N++Q +YRP LT IPFFQQ TGI
Sbjct: 242 EMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGI 301
Query: 300 NVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
NVIMFYAPVLF TIGFG+DASL+SAVITG+VNV++T+VSIY VDK+GRR LFL+GG
Sbjct: 302 NVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGG 357
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
Identities = 193/346 (55%), Positives = 256/346 (73%)
Query: 10 GNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANE 69
G G+ Y G +T +V++TCIVAAMGGL+FGYD+GISGGVTSM FL KFFP V + + +
Sbjct: 12 GGGRSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAK 71
Query: 70 STNQYCQYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXX 129
YC++D++ L +FT +TR+ GRK+SM
Sbjct: 72 HDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAF 131
Query: 130 XXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLN 189
+ MLI+GRLLLG G+GFANQS P+YLSEMAP + RGALNIGFQ++IT+GIL+AN++N
Sbjct: 132 AVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLIN 191
Query: 190 YFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVN 249
Y +K+ GWR+SLG A VPA+++ +GS ILPDTPNS++ERG++EEA++ L+K+RG +
Sbjct: 192 YGTSKM-AQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAKQMLKKIRGAD 250
Query: 250 DVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL 309
+V+ EF DL+ A EA+++VE+PWKN+++ KYRP L IPFFQQ TGINVIMFYAPVL
Sbjct: 251 NVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVL 310
Query: 310 FNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
F T+GFG DA+LMSAVITG+VN+++T VSIY VD++GRR LFLEGG
Sbjct: 311 FKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGG 356
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
Identities = 198/347 (57%), Positives = 254/347 (73%)
Query: 10 GNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANE 69
G G Y G +T +V++TCIVAAMGGL+FGYD+GISGGVTSM FL KFFP V ++
Sbjct: 12 GGGNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEAR 71
Query: 70 STNQYCQYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXX 129
YC++D++ L +FT VTR++GRK+SM
Sbjct: 72 RETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAF 131
Query: 130 XXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLN 189
+ MLIVGRLLLG G+GFANQS P+YLSEMAP + RGALNIGFQ++IT+GILIAN++N
Sbjct: 132 ATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLIN 191
Query: 190 YFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVN 249
Y +++ GWR+SLG A VPA+I+ +GS +LPDTPNS++ERG++E+ARE L+K+RG +
Sbjct: 192 YGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQAREMLQKIRGAD 250
Query: 250 DVEEEFNDLVAASEASRQVEHPWKNLLQK-KYRPHLTMAVLIPFFQQFTGINVIMFYAPV 308
+V+EEF DL A EA+++V++PWKN+ Q+ KYRP L IPFFQQ TGINVIMFYAPV
Sbjct: 251 NVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPV 310
Query: 309 LFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
LF T+GF DASL+SAVITG VNVV+T+VSIY VD++GRR LFLEGG
Sbjct: 311 LFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGG 357
|
|
| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
Identities = 194/353 (54%), Positives = 252/353 (71%)
Query: 5 GGF-DKGNG-KEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVY 62
GGF + G + Y LTP V VTC + A GGLIFGYD+GISGGVTSM FL++FFP VY
Sbjct: 3 GGFVSQTPGVRNYNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPYVY 62
Query: 63 RKQQANESTNQYCQYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXX 122
+K ++ N+YC++DS+ LT+FT +TR FGRK SM
Sbjct: 63 KKMKSAHE-NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFI 121
Query: 123 XXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGI 182
I ML++GR+LLGFG+GFANQSVP+YLSEMAP RGA N GFQ++I GI
Sbjct: 122 GSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGI 181
Query: 183 LIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREEL 242
++A ++NYF ++ G GWR+SLG A VPA++I +G++ILPDTPNS+IERG EEA+E L
Sbjct: 182 VVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYTEEAKEML 241
Query: 243 RKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVI 302
+ +RG N+V+EEF DL+ ASE S+QV+HPWKN++ +YRP L M IPFFQQ TGINVI
Sbjct: 242 QSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGINVI 301
Query: 303 MFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
FYAPVLF T+GFGS ASL+SA++TGI+ ++ T VS++ VD++GRR LFL+GG
Sbjct: 302 TFYAPVLFQTLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGG 354
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
Identities = 192/353 (54%), Positives = 254/353 (71%)
Query: 5 GGF-DKGNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYR 63
GGF NG E+ +TP V+++CI+AA GGL+FGYD+G+SGGVTSMP FL+KFFP VYR
Sbjct: 4 GGFATSANGVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYR 63
Query: 64 KQQAN-ESTNQYCQYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXX 122
K A + + YC+YD++ L +FT TR GR+L+M
Sbjct: 64 KVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFII 123
Query: 123 XXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGI 182
+ MLI GR+LLG G+GFANQ+VPL+LSE+AP R RG LNI FQL++T+GI
Sbjct: 124 GVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGI 183
Query: 183 LIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREEL 242
L AN++NY KI GGWGWRLSLG A +PAL++TVG++++ +TPNS++ERGR +E + L
Sbjct: 184 LFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGKAVL 243
Query: 243 RKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVI 302
R++RG ++VE EF DL+ AS +++V+HP++NLLQ++ RP L +AV + FQQ TGIN I
Sbjct: 244 RRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAI 303
Query: 303 MFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
MFYAPVLF+T+GFGSDASL SAV+TG VNV++T+VSIY VDK GRR L LE G
Sbjct: 304 MFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAG 356
|
|
| TAIR|locus:2179734 AT5G26250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
Identities = 178/345 (51%), Positives = 243/345 (70%)
Query: 10 GNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVY-RKQQAN 68
GN K + +T YV + I+AA+GGLIFGYDIGISGGVT+M FLK+FFPSVY RK+ A+
Sbjct: 9 GNSKSFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKKHAH 68
Query: 69 ESTNQYCQYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXX 128
E N YC+YD++ L +FT + GR+ +M
Sbjct: 69 E--NNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAA 126
Query: 129 XXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVL 188
I+MLI+GR+LLGFG+GF NQ+VPL+LSE+AP R RG LNI FQL +T+GILIAN++
Sbjct: 127 GAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIANIV 186
Query: 189 NYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGV 248
NYF + IH +GWR++LGGA +PALI+ GS+++ +TP S+IER + +E +E L+K+RGV
Sbjct: 187 NYFTSSIHP-YGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKKIRGV 245
Query: 249 NDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPV 308
DV+EE+ +V A + +RQV+ P+ L++ RP + +L+ FFQQFTGIN IMFYAPV
Sbjct: 246 EDVDEEYESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLLQFFQQFTGINAIMFYAPV 305
Query: 309 LFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353
LF T+GFG+DA+L+SAV+TG +NV++T V I+ VDK GRRFL L+
Sbjct: 306 LFQTVGFGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQ 350
|
|
| TAIR|locus:2083003 STP6 "sugar transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
Identities = 169/344 (49%), Positives = 237/344 (68%)
Query: 11 NGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVY-RKQQANE 69
N + +T YV + ++AA+GGLIFGYDIGISGGV++M FLK+FFP+V+ RK+ +E
Sbjct: 9 NAPAFEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWERKKHVHE 68
Query: 70 STNQYCQYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXX 129
N YC+YD++ L +FT + GR+ +M
Sbjct: 69 --NNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGVGLTAG 126
Query: 130 XXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLN 189
+ MLI+GRL LGFG+GF NQ+VPL+LSE+AP + RG LNI FQL +T+GILIAN++N
Sbjct: 127 AVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILIANIVN 186
Query: 190 YFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVN 249
YF +H +GWR++LGGA +PA+I+ GS+++ +TP S+IER ++EE +E LRK+RGV+
Sbjct: 187 YFTATVHP-YGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALRKIRGVD 245
Query: 250 DVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL 309
D+ +E+ +V A + + QV+ P++ LL+ RP + +L+ FQQFTGIN IMFYAPVL
Sbjct: 246 DINDEYESIVHACDIASQVKDPYRKLLKPASRPPFIIGMLLQLFQQFTGINAIMFYAPVL 305
Query: 310 FNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353
F T+GFGSDA+L+SAVITG +NV+AT V IY VD+ GRRFL L+
Sbjct: 306 FQTVGFGSDAALLSAVITGSINVLATFVGIYLVDRTGRRFLLLQ 349
|
|
| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 170/350 (48%), Positives = 239/350 (68%)
Query: 8 DKGNGKE---YPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRK 64
D+G K Y +T Y + CIV +MGG +FGYD+G+SGGVTSM FLK+FFP +Y++
Sbjct: 8 DEGGLKRAHLYEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEFFPGIYKR 67
Query: 65 QQANESTNQYCQYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXX 124
+Q + + YC+YD++ LT+FT VTR +GR+ S+
Sbjct: 68 KQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSVSFFLGG 127
Query: 125 XXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILI 184
I MLI+GR+ LG GIGF NQ+VPLYLSEMAP + RG +N FQL+ +GIL+
Sbjct: 128 VINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLTTCIGILV 187
Query: 185 ANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRK 244
AN++NY +IH WGWRLSLG A VPA+++ +G ++LP+TPNS++E+G+ E+A+ L K
Sbjct: 188 ANLINYKTEQIHP-WGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEKAKAVLIK 246
Query: 245 VRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTM-AVLIPFFQQFTGINVIM 303
VRG N++E EF DLV AS+A+R V++P++NLL ++ RP L + A+ +P FQQ TG+N I+
Sbjct: 247 VRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTGMNSIL 306
Query: 304 FYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353
FYAPV+F ++GFG ASL+S+ IT VVA ++S+Y DK+GRRFL LE
Sbjct: 307 FYAPVMFQSLGFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLE 356
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
Identities = 171/351 (48%), Positives = 233/351 (66%)
Query: 6 GFDKGNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVY-RK 64
G K ++Y G +T YV++ C+VAA+GG IFGYDIGISGGVTSM FL++FF +VY +K
Sbjct: 10 GVAKERAEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKK 69
Query: 65 QQANESTNQYCQYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXX 124
+QA+ES YC+YD++ L FT +TR +GR+ S+
Sbjct: 70 KQAHESN--YCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGS 127
Query: 125 XXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILI 184
+ ML+ GR++LG GIGF NQ+VPLYLSE+AP RG LN+ FQL+ T+GI
Sbjct: 128 GLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFT 187
Query: 185 ANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRK 244
AN++NY ++ WGWRLSLG A PAL++T+G LP+TPNS++ERG E R L K
Sbjct: 188 ANMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTERGRRVLVK 246
Query: 245 VRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMF 304
+RG +V E D+V ASE + ++HP++N+LQK++RP L MA+ +P FQ TGIN I+F
Sbjct: 247 LRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILF 306
Query: 305 YAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
YAPVLF T+GFG +ASL S+ +TG V V++T +SI VD+ GRR L + GG
Sbjct: 307 YAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGG 357
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q41144 | STC_RICCO | No assigned EC number | 0.8263 | 1.0 | 0.6787 | N/A | no |
| P23586 | STP1_ARATH | No assigned EC number | 0.8146 | 0.9971 | 0.6781 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 355 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 3e-93 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-74 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 5e-46 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-17 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-13 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 3e-13 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 9e-10 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-07 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 4e-07 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 9e-07 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 1e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-06 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 4e-06 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 8e-06 | |
| COG2807 | 395 | COG2807, CynX, Cyanate permease [Inorganic ion tra | 4e-05 | |
| pfam06609 | 598 | pfam06609, TRI12, Fungal trichothecene efflux pump | 1e-04 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 2e-04 | |
| PRK10213 | 394 | PRK10213, nepI, ribonucleoside transporter; Review | 2e-04 | |
| PRK05122 | 399 | PRK05122, PRK05122, major facilitator superfamily | 5e-04 | |
| COG2211 | 467 | COG2211, MelB, Na+/melibiose symporter and related | 0.002 | |
| TIGR02332 | 412 | TIGR02332, HpaX, 4-hydroxyphenylacetate permease | 0.002 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 0.002 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 0.003 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 285 bits (731), Expect = 3e-93
Identities = 127/333 (38%), Positives = 193/333 (57%), Gaps = 15/333 (4%)
Query: 27 CIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFT 86
+VAA+GG +FGYD G+ G ++ F K+F C + +
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTS---------IGACAASTVLSGLIV 52
Query: 87 SSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ--AIWMLIVGRLLLG 144
S + L+ SL A ++ +FGRK S+ G +LF+ GALL GFA+ + +MLIVGR+++G
Sbjct: 53 SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112
Query: 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLS 204
G+G + VP+Y+SE+AP + RGAL +QL IT GIL+A ++ NK GWR+
Sbjct: 113 LGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIP 172
Query: 205 LGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEA 264
LG VPA+++ +G + LP++P ++ +G+ EEAR L K+RGV+DV++E + + E
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLER 232
Query: 265 SRQVEHPWKNLL--QKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLM 322
S + E L K R L M V++ FQQ TGIN I +Y+P +F T+G +
Sbjct: 233 SVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSL--L 290
Query: 323 SAVITGIVNVVATMVSIYGVDKWGRRFLFLEGG 355
+I G+VN V T ++I+ VD++GRR L L G
Sbjct: 291 VTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGA 323
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 237 bits (607), Expect = 2e-74
Identities = 127/350 (36%), Positives = 199/350 (56%), Gaps = 22/350 (6%)
Query: 15 YPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQY 74
G+ V + ++AA+GGL+FGYD G+ GG ++P+F KF
Sbjct: 18 GLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTS------------ANS 65
Query: 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG---FAQ 131
Y S + S + + +L A ++ +FGRK S+ +LF+ GA+L G FA
Sbjct: 66 DSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFAL 125
Query: 132 AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYF 191
++ MLIVGR+LLG G+G A+ VP+YLSE+AP RGAL +QL+IT GIL+A
Sbjct: 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSG 185
Query: 192 FNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDV 251
++ GWR+ LG ++PA ++ +G LP++P ++ +GR EEAR+ L ++RG +
Sbjct: 186 KVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGE 245
Query: 252 EEEFNDLVAASEASR-----QVEHPWKNL--LQKKYRPHLTMAVLIPFFQQFTGINVIMF 304
++E D + + R V+ W +L ++ R L + V++ +FQQFTGIN IM+
Sbjct: 246 DKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMY 305
Query: 305 YAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354
Y+P +F G +D + + ++I G VN T V+I+ VD++GRR L L G
Sbjct: 306 YSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIG 355
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 5e-46
Identities = 100/362 (27%), Positives = 167/362 (46%), Gaps = 55/362 (15%)
Query: 22 YVLVTCIVAAMGGLIFGYDIG-ISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSE 80
Y+ +VA +GGL+FGYD ISG V S L F N +
Sbjct: 9 YIFSITLVATLGGLLFGYDTAVISGTVES----LNTVFV---------APQNLSESAANS 55
Query: 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLN-----GFAQA--- 132
L +S + ++ + + +FGR+ S+ +LF AL + GF
Sbjct: 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPD 115
Query: 133 ----IWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVL 188
+ ++ R++ G G+G A+ P+Y++E+AP RG L Q +I G L+ +
Sbjct: 116 NTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFV 175
Query: 189 NYFFNKIHGG----W----GWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEARE 240
NYF I W GWR +PAL+ + +P+TP ++ RG+ E+A
Sbjct: 176 NYF---IARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEG 232
Query: 241 ELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLT-------MAVLIPFF 293
LRK+ G + ++ + + +K L + V++ F
Sbjct: 233 ILRKIMGNTLATQALQEIKHSLDHG-----------RKTGGKLLMFGVGVIVIGVMLSVF 281
Query: 294 QQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353
QQF GINV+++YAP +F T+G +D +L+ +I G++N+ T+++I VDK+GR+ L +
Sbjct: 282 QQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII 341
Query: 354 GG 355
G
Sbjct: 342 GA 343
|
Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 1e-17
Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 23/197 (11%)
Query: 27 CIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFT 86
++ +G + G D G+ +P + + +
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPA--LPLLAEDL------------------GLSASQAGLIV 40
Query: 87 SSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFG 146
S+ L L SL+A ++ +FGR+ + G +LF G+LL FA ++W+L+VGR LLG G
Sbjct: 41 SAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLG 100
Query: 147 IGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLG 206
G + ++E P + RG F +G L+ +L + GWR
Sbjct: 101 GGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES---LGWRWLFL 157
Query: 207 GAMVPALIITVGSMILP 223
+ L++ + + L
Sbjct: 158 ILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 60/269 (22%), Positives = 125/269 (46%), Gaps = 18/269 (6%)
Query: 84 MFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLL 143
+ S ++ LL S V ++ +FGRK + ++ +L F+ + +V RLL+
Sbjct: 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190
Query: 144 GFGI-GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWR 202
G GI G Q+V L E P + R + Q+ ++G+++ ++ YF WR
Sbjct: 191 GMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWR 243
Query: 203 LSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVE---EEFNDLV 259
+P + + S +P++P +I +GR EEA + L+++ +N + E + +
Sbjct: 244 WLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSL 303
Query: 260 AASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDA 319
+S + ++ + +L + T+ +++ +F +Y VL G+
Sbjct: 304 EKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF----TTAFS-YYGLVLDLGNLGGNI- 357
Query: 320 SLMSAVITGIVNVVATMVSIYGVDKWGRR 348
+ I+G+V + A ++++ +D+ GRR
Sbjct: 358 -YLDLFISGLVELPAKLITLLLIDRLGRR 385
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 3e-13
Identities = 51/276 (18%), Positives = 101/276 (36%), Gaps = 35/276 (12%)
Query: 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLI 137
+ + ++ L L+ +A R++ +FGR+ + G +LF G LL FA ++W+L+
Sbjct: 30 SPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLL 89
Query: 138 VGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG 197
V R+L G G G + +++ P RG +G + +L +
Sbjct: 90 VLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL---LAS 146
Query: 198 GWGWRLSLGGAMVPALI-ITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFN 256
+GWR + + AL+ + +++LP P EEA L
Sbjct: 147 LFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAW---------- 196
Query: 257 DLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFG 316
K + +L+ ++ Y P+ +G
Sbjct: 197 ---------------------KLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLS 235
Query: 317 SDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352
+ + + + G++ + ++ D+ GRR L
Sbjct: 236 ALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLL 271
|
Length = 346 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 9e-10
Identities = 73/342 (21%), Positives = 128/342 (37%), Gaps = 41/342 (11%)
Query: 19 LTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYD 78
L+ Y I++ + L+ GYD+ G + P+ ++ D
Sbjct: 11 LSRYQWRAIILSFLIMLMDGYDLAAMG--FAAPAISAEW------------------GLD 50
Query: 79 SETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIV 138
L S+ + +L + + GR+ + + +LF LL A + L++
Sbjct: 51 PVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLI 110
Query: 139 GRLLLGFGIGFANQSVPLYLSEMAPYRFR----GALNIGFQLSITVGILIANVLNYFFNK 194
R L G G+G ++ +SE AP RFR G + G+ + VG +A L F
Sbjct: 111 LRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-- 168
Query: 195 IHGGWGWR-LSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEE 253
GWR L G + P L++ + LP++ + ++ + R E R + + E
Sbjct: 169 -----GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAI-APQMQAE 221
Query: 254 EFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTI 313
+ L +K L Q K + L+ F G+ + + P L +
Sbjct: 222 AQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLV-GVYFLTNWLPKL--MV 278
Query: 314 GFGSDASLMSAVITGIVNVVATMVSIYG---VDKWGRRFLFL 352
G S ++A + N + SI D+ G R L
Sbjct: 279 ELGFSLS-LAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL 319
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-07
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 83 TMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLL 142
+ + L L+ S ++ +T +FGRK + G +F+ + + I +LI+ R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 143 LGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWR 202
GFG FA + ++++ P RG I +G L+ L + GWR
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGV---LAQFLGWR 117
Query: 203 LSLGGAMVPALIITV-GSMILPDT 225
+ AL + + +LP+T
Sbjct: 118 APFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 86 TSSLYLAALLS----SLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRL 141
+SL AA +S L+ + ++GR+L+M +LF G L GFA W L + RL
Sbjct: 57 AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARL 116
Query: 142 LLGFGIGFANQSVPLYLSEMAPYRFR----GALNIGFQLSITVGILIANVLNYFFNKIHG 197
++G G+ S Y+ E P R G L GF + ++ A V + +
Sbjct: 117 VIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIG---AVVAAQVYSL----VVP 169
Query: 198 GWGWRLSLGGAMVPALI 214
WGWR ++P +
Sbjct: 170 VWGWRALFFIGILPIIF 186
|
Length = 496 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 9e-07
Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 14/173 (8%)
Query: 79 SETLTMFTSSLY-LAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLI 137
SE + Y L L + + + +T + R+ + LF+ LL+ A + +L+
Sbjct: 46 SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLL 105
Query: 138 VGRLLLGFGIGFANQSVPLYLSEMAPYRFRGA----LNIGFQLSITVGILIANVLNYFFN 193
+ R L G G + + P RG + G L+ +G+ + L
Sbjct: 106 LARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL-- 163
Query: 194 KIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVR 246
+GWR + V AL+ + L P S I R LR +R
Sbjct: 164 -----FGWRATFLAIAVLALLALLLLWKL--LPPSEISGSLPGPLRTLLRLLR 209
|
Length = 394 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 55/261 (21%), Positives = 90/261 (34%), Gaps = 17/261 (6%)
Query: 93 ALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQ 152
AL+ L R GR+L M +LF AG L GFA + + RL++G G+G
Sbjct: 64 ALMFGLWGDRY----GRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYG 119
Query: 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPA 212
S Y+ E P R + VG ++A + + G GWR +++P
Sbjct: 120 SSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD-GWRALFFISILPI 178
Query: 213 LIITVGSMILPDTPNSIIERGRHEEAREELRKV-RGVNDVEEEFNDLVAASEASRQVEHP 271
+ +P+ + + R + + G + + L AA S
Sbjct: 179 IFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAG---- 234
Query: 272 WKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVN 331
K P V++ F + L +G V + I
Sbjct: 235 -------KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGA 287
Query: 332 VVATMVSIYGVDKWGRRFLFL 352
+V V + D GRR ++
Sbjct: 288 IVGGCVFGFLGDWLGRRKAYV 308
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Query: 77 YDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLS-MFFGGILFLAGALLNGFAQAIWM 135
+ + S L +L +L+ ++ + GR+ + G +L G LL A ++ +
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 136 LIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKI 195
L+V LLLGFG+GFA ++ SE+AP RG + F ++G + +
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALG---PLLAGLL 324
Query: 196 HGGWGWRLSLGGAMVPALIITVGSMILP 223
G+ AL+ + ++LP
Sbjct: 325 LDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Query: 90 YLAALLSSLVASRVTRQFGRKLSMFFG----GILFLAGALLNGFAQA-IW---MLIVGRL 141
+LA L ++V + GRK ++ GI L LL +A IW +L++ RL
Sbjct: 45 FLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARL 104
Query: 142 LLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGG--- 198
+ GF +G LYL+E AP RG Q+ VG+L+A + + + G
Sbjct: 105 IQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDAL 164
Query: 199 --WGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVR 246
WGWR+ + V LI L +TP + +H++ R + +
Sbjct: 165 LEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETL 214
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 8e-06
Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 16/179 (8%)
Query: 84 MFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLL 143
M +YL ++ + + + GRK + + A + F Q + RLL
Sbjct: 206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLS 265
Query: 144 GFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRL 203
GFGIG A V Y +E RG + +G + A + + I +GW
Sbjct: 266 GFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW---AIIPHYGWSF 322
Query: 204 SLGGA-------------MVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVN 249
+G A P + +P++P +E G+H+EA L+ + N
Sbjct: 323 QMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 18/124 (14%)
Query: 97 SLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPL 156
+ A R+ R+FG + S+F +L AG L+ + +L +G LL G GI N +P
Sbjct: 64 APAAPRLARRFGEERSLFLALLLIAAGILIRSLGG-LPLLFLGTLLAGAGIAVINVLLPS 122
Query: 157 YLSEMAPYR-------FRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAM 209
+ P R + +L G L+ + + +A GWR +LG
Sbjct: 123 LIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSG----------GWRGALGFWA 172
Query: 210 VPAL 213
+ AL
Sbjct: 173 LLAL 176
|
Length = 395 |
| >gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12) | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 16/173 (9%)
Query: 79 SETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIV 138
SE +F++ + +S L+ R+T +FGR+ + I+ L GA++ A L+
Sbjct: 77 SENQGLFSTLWTMGQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKFNTLLA 136
Query: 139 GRLLLGFGIGFANQSVPLYLSEMAP--YRFRGALNIGFQLSITVGILIANVLNYFFNK-- 194
LLG G A S PL++ E+ +F G L ++ + N +F +
Sbjct: 137 AMTLLGVAAGPAGAS-PLFIGELMSNKTKFLGL------LIVSAPTIAMNGAGPYFGQRL 189
Query: 195 -IHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIE-RGRHEEAREELRKV 245
I G W W + + I V +I+ P S + G+ R+EL K+
Sbjct: 190 AIQGNWRWIFYI---YIIMSAIAVLLIIIWYHPPSFAQLHGKKARKRDELAKL 239
|
This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster.It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes. Length = 598 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 74 YCQY---DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA 130
Y Y ++ ++ +AA+L + + + ++FG+K + G +L G +L F
Sbjct: 248 YFTYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFL 307
Query: 131 --QAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPY 164
++W+ +V +L G G+G A L+++ Y
Sbjct: 308 PPGSLWLFLVLVVLAGIGLGLATLLPWAMLADVVDY 343
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 65/265 (24%), Positives = 104/265 (39%), Gaps = 53/265 (20%)
Query: 79 SETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIV 138
S T+T F A+ +SL ++ + R+ + +L LL FA + +L++
Sbjct: 60 SVTVTAFV------AMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLI 113
Query: 139 GRLLLGFGI-GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG 197
GR LG + GF S L + + P AL++ F ++++ ++IA L F ++
Sbjct: 114 GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFG-AVSIALVIAAPLGSFLGEL-- 170
Query: 198 GWGWRLSLGGAMVPALIITVGSM-ILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFN 256
GWR A V ++ + LP P
Sbjct: 171 -IGWRNVFNAAAVMGVLCIFWIIKSLPSLP------------------------------ 199
Query: 257 DLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYA-PVLFNTIGF 315
E S Q ++ + LLQ RP + MA +I F F G Y PV N GF
Sbjct: 200 -----GEPSHQKQNTF-RLLQ---RPGV-MAGMIAIFMSFAGQFAFFTYIRPVYMNLAGF 249
Query: 316 GSDASLMSAVITGIVNVVATMVSIY 340
G D + + GI + V T +S +
Sbjct: 250 GVDGLTLVLLSFGIASFVGTSLSSF 274
|
Length = 394 |
| >gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 87 SSLYLAALLSSLVASRVTRQFGRKLSMFFG-------GILFLAGALLNGF-AQAIWMLIV 138
S YLA LLS A R G K ++ FG G+L+L LL + ++ +L++
Sbjct: 58 SLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLL 117
Query: 139 GRLLLGFGIGFA 150
GRLLLG G A
Sbjct: 118 GRLLLGIGESLA 129
|
Length = 399 |
| >gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 74 YCQY---DSETLTMFTSSLYL-AALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF 129
Y Y D E L+ ++ R+ ++FG+K G +L G LL F
Sbjct: 262 YVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYF 321
Query: 130 AQA--IWMLIVGRLLLGFGIGFAN 151
A + +++V ++ G G G AN
Sbjct: 322 TPAGSVVLIVVALIIAGVGTGIAN 345
|
Length = 467 |
| >gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.002
Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 21/226 (9%)
Query: 129 FAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVL 188
FA L + R+L+G + LYL+ P FR N F +++ V + + +L
Sbjct: 92 FATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLIL 151
Query: 189 NYFFNKIHG-----GWGWRLSLGGAMVPALIITVGSMI-LPDTPNSIIERGRHEEAREEL 242
+ + + G GW W L G P++I+ V + L D+P+ + EE ++ L
Sbjct: 152 SGYILALDGLMALKGWQWLFLLEG--FPSVILGVMTWFWLDDSPDK--AKWLDEEDKKAL 207
Query: 243 RKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVI 302
+++ ++ + L A P +++L++ + P + + L +F ++ I
Sbjct: 208 KEM-----IDNDQLTLEQPEGAFAHAAMPQRSMLREIFTPAIMLYTL-AYFCLTNTLSAI 261
Query: 303 MFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRR 348
+ P + + GS S ++ G++ + +I+G+ W R
Sbjct: 262 NIWTPQILQSFNQGS-----SNIMIGLLAAIPQFCTIFGMIWWSRH 302
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 17/95 (17%)
Query: 135 MLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQ-LSITVGILIANVLNYFFN 193
++++GRLL GF G V +YL+E+A +G +Q S V ++ A +L Y N
Sbjct: 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFY-TSWQSASQQVAVVFAALLGYLLN 177
Query: 194 KIH-----GGWGWRLSLGGAMVPALIITVGSMILP 223
+ WGWR +P LI G +I+P
Sbjct: 178 QWLSPAQMAEWGWR-------IPFLI---GCLIVP 202
|
Length = 434 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.003
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Query: 106 QFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYR 165
+FGRK M + + + G L+G A + ML + R ++G G+ Y E P
Sbjct: 79 KFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH 138
Query: 166 FRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALII 215
+ + +G +IA YF +GWR + ++P L++
Sbjct: 139 LKSKASAFLVSGFGIGNIIA---AYFMPSFAEAYGWRAAFFVGLLPVLLV 185
|
Length = 426 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 13/164 (7%)
Query: 82 LTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRL 141
L + SS +A +S V V+ + ++ + G IL L GF+ ++W++
Sbjct: 32 LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWA 91
Query: 142 LLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGW 201
L G G +++ RG + S VG + L F W W
Sbjct: 92 LNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHW 151
Query: 202 RLSLGGAMVPALIITVGSMI----LPDTPNSI----IERGRHEE 237
+VP +I + S+I L D+P S E +EE
Sbjct: 152 VF-----IVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEE 190
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 355 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.98 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.98 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.98 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.97 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.97 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.97 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.97 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.97 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.96 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.96 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.96 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.96 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.96 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.96 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.96 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.96 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.95 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.95 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.95 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.95 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.95 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.95 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.95 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.95 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.95 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.95 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.94 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.94 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.94 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.94 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.94 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.94 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.94 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.94 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.93 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.93 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.93 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.93 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.93 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.93 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.93 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.93 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.93 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.93 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.93 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.93 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.93 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.93 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.93 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.93 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.92 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.92 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.92 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.92 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.92 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.91 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.9 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.9 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.89 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.89 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.89 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.89 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.89 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.89 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.88 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.88 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.87 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.87 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.86 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.86 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.85 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.85 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.85 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.85 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.83 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.83 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.83 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.82 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.81 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.8 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.79 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.76 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.76 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.75 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.73 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.67 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.66 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.65 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.65 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.64 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.63 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.62 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.62 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.61 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.59 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.58 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.56 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.56 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.55 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.54 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.53 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.52 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.52 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.51 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.5 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.5 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.5 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.5 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.49 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.49 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.48 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.48 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.45 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.45 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.44 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.43 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.42 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.42 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.41 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.41 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.4 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.4 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.4 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.4 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.4 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.38 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.38 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.38 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.36 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.36 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.35 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.35 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.34 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.32 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.31 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.3 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.28 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.28 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.27 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.26 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.25 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.24 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.23 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.23 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.23 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.22 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.22 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.21 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.21 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.21 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.19 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.19 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.18 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.17 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.16 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.14 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.14 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.13 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.13 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.12 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.11 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.1 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.09 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.09 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.07 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.05 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.04 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.04 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.04 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.03 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.03 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.03 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.03 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.02 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.02 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.02 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.01 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.01 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.0 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.99 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.99 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.97 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.96 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.93 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.92 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.92 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.92 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.88 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.86 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.86 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.86 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.85 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.85 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.85 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.83 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.82 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.8 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.8 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.78 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.72 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.71 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.68 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.66 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.61 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.6 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.59 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.58 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.58 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.52 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.49 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.46 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.42 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.41 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.39 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.33 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.32 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.27 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.26 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.24 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.16 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.15 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.09 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.07 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.03 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.0 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.96 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.85 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.83 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.8 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.79 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.72 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.66 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.59 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.54 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 97.48 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.43 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.38 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.34 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.29 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.13 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.03 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.01 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.84 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.8 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 96.78 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.64 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.63 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.42 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.21 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.12 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 95.96 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 95.24 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 94.69 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 94.03 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 93.7 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 92.98 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 92.94 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 92.69 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 91.27 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 91.09 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 90.22 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 89.75 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 89.41 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 89.09 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 88.36 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 87.97 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 87.63 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 84.92 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 83.93 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 82.57 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 81.94 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 81.34 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 80.85 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=259.61 Aligned_cols=332 Identities=31% Similarity=0.554 Sum_probs=272.9
Q ss_pred CCCCChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHH
Q 041698 16 PGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALL 95 (355)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~ 95 (355)
++++.++...++.+++++.+-+||+.+..++. ....+++.++-+.++.+.+.-++.+ ....+.+++++.+|.++
T Consensus 2 ~~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap---~~~i~~f~n~t~~~r~g~~~s~~~~---~~lwS~~vs~f~iG~~~ 75 (485)
T KOG0569|consen 2 KPKLTRRLLLAVIVATLGSFQFGYNIGVVNAP---QELIKSFINETLIERYGLPLSDSTL---DLLWSLIVSIFFIGGMI 75 (485)
T ss_pred CCCccHHHHHHHHHHHHhchhhhhhheecCch---HHHHHHHHHHHHHHhcCCCCChHHH---HHHHHHHHHHHHHHHHH
Confidence 34566677777888888889999999988755 3555666544444443322222111 23577888999999999
Q ss_pred HHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhh
Q 041698 96 SSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF---AQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNI 172 (355)
Q Consensus 96 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 172 (355)
|+++.+.++||+|||..++++.++..++.++..+ .+++.+++++|++.|+..|......+.|+.|..|++.||....
T Consensus 76 Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~ 155 (485)
T KOG0569|consen 76 GSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGT 155 (485)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHH
Confidence 9999999999999999999999999998877765 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHh-cCChHHHHHHHHHHhCCCcc
Q 041698 173 GFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIE-RGRHEEAREELRKVRGVNDV 251 (355)
Q Consensus 173 ~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (355)
+...+..+|.+++..++..-.-.+ ...|++.+....+++++.++...++||||||+.. +++.+||++.++..++.++.
T Consensus 156 ~~~~~~~~g~ll~~~~~l~~ilGt-~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~ 234 (485)
T KOG0569|consen 156 LLQIGVVIGILLGQVLGLPSLLGT-EDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDV 234 (485)
T ss_pred HHHHHHHHHHHHHHHHccHHhcCC-CcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcc
Confidence 999999999999977665432111 3579999999999999999999999999999988 89999999999999998876
Q ss_pred HHHHHHHHHHHHHh---hccccchhhhhcc-CchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHH
Q 041698 252 EEEFNDLVAASEAS---RQVEHPWKNLLQK-KYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVIT 327 (355)
Q Consensus 252 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 327 (355)
+.+.++..++.+.+ ++++.++.+++++ ..+++....+.+....++.+.+...+|...++++.|++..++.+.....
T Consensus 235 ~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~ 314 (485)
T KOG0569|consen 235 EAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGI 314 (485)
T ss_pred hhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66655544433332 2245678888875 4456667777888888999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhheecccCCccccccC
Q 041698 328 GIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 328 ~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
++..++.++++.++.||.|||++++.+
T Consensus 315 g~v~~~~t~~~~~lid~~gRRpLll~~ 341 (485)
T KOG0569|consen 315 GIVNLLSTLVSPFLIDRLGRRPLLLIS 341 (485)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 999999999999999999999998764
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=255.62 Aligned_cols=320 Identities=29% Similarity=0.554 Sum_probs=241.7
Q ss_pred CChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHH
Q 041698 19 LTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSL 98 (355)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~ 98 (355)
..+.....+.++.++.+.++||.+.+++. .|.+.+.+. +....+++++..+.+++.+++.++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~ 73 (479)
T PRK10077 6 NSSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFV----------APQNLSESAANSLLGFCVASALIGCIIGGA 73 (479)
T ss_pred cchHHHHHHHHHHHHHHhcCcccceehHh--HHHHHHHhc----------ccccccccCChhHHHHHHHHHHHHHHHHHH
Confidence 34556667777888999999999999887 677777773 234556789999999999999999999999
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCc
Q 041698 99 VASRVTRQFGRKLSMFFGGILFLAGALLNGFA------------QAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRF 166 (355)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~ 166 (355)
++|+++||+|||++++++.++.+++.+.++++ +.++.++++|+++|++.|...+...++++|++|+++
T Consensus 74 ~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~ 153 (479)
T PRK10077 74 LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI 153 (479)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh
Confidence 99999999999999999999999998887763 336778999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhcC-----CCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHH
Q 041698 167 RGALNIGFQLSITVGILIANVLNYFFNKI-----HGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREE 241 (355)
Q Consensus 167 r~~~~~~~~~~~~~G~~~~~~i~~~~~~~-----~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 241 (355)
|++++++...+..+|.++++.++..+... .+.++||+.|++.+++.++..+..+++||+|+++..+++.+++.+.
T Consensus 154 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 233 (479)
T PRK10077 154 RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGI 233 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHH
Confidence 99999999999999999998887765421 1246899999988888777666677889999998778887777766
Q ss_pred HHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHH
Q 041698 242 LRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASL 321 (355)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 321 (355)
.++..+.++.+...++..+..+.++. .....+. ..............+.+....+...++.|.+.++.|++.....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~ 309 (479)
T PRK10077 234 LRKIMGNTLATQALQEIKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIAL 309 (479)
T ss_pred HHHHcCChhHHHHHHHHHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHH
Confidence 66655443332222222111111110 0111111 1111112222233344444555667788888888999888777
Q ss_pred HHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 322 MSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
......++..+++.+++++++||+|||++++.+
T Consensus 310 ~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~ 342 (479)
T PRK10077 310 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIG 342 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHh
Confidence 888888899999999999999999999887654
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=261.89 Aligned_cols=321 Identities=19% Similarity=0.246 Sum_probs=231.4
Q ss_pred CCCChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHH
Q 041698 17 GNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLS 96 (355)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~ 96 (355)
.+..+.++.++.++.++.+.++||.+..+.+ .|.+.+++. ..+.+.+..+.+++.+.+.+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~--~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ig~~ig 72 (502)
T TIGR00887 8 APFGWQHFRAIVIAGVGFFTDSYDLFCISLV--TKMLGYVYY-------------HGKGPLPSSVSAAVNGSASIGTLAG 72 (502)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhc-------------cCcccchHHHHHHHHHHHHHHHHHH
Confidence 4555677778888899999999999998877 444433321 0122556778899999999999999
Q ss_pred HHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccch
Q 041698 97 SLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQA------IWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGAL 170 (355)
Q Consensus 97 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~ 170 (355)
+++.|+++||+|||+++.++.++..+++++++++++ ++.++++|+++|++.|...+....++.|++|+++|+++
T Consensus 73 ~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~ 152 (502)
T TIGR00887 73 QLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAM 152 (502)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHH
Confidence 999999999999999999999999999999888765 78999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcC--------------------CCccchHHHHhhhHHHHHHHHHHhccccCChhHHH
Q 041698 171 NIGFQLSITVGILIANVLNYFFNKI--------------------HGGWGWRLSLGGAMVPALIITVGSMILPDTPNSII 230 (355)
Q Consensus 171 ~~~~~~~~~~G~~~~~~i~~~~~~~--------------------~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 230 (355)
+++......+|.++++.++..+... ..+++||+++.+.++++++..+..+++||+|+|+.
T Consensus 153 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~ 232 (502)
T TIGR00887 153 MAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTA 232 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999888765320 01257999999888888877777788999999998
Q ss_pred hcCChH-HHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCc---hhHHHHHHHHHHHHHcccccchHhcH
Q 041698 231 ERGRHE-EAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKY---RPHLTMAVLIPFFQQFTGINVIMFYA 306 (355)
Q Consensus 231 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
.+++.+ ++.+.+.+....+..++ .++..+.+++++..+.+++++++... ..+..+.....++.....++....+.
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 311 (502)
T TIGR00887 233 DVAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQ 311 (502)
T ss_pred HhCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 887764 45555555543221111 01111000011111234666665321 11222322233333333344556678
Q ss_pred HHHHHhcCCCCcHHHH------------HHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 307 PVLFNTIGFGSDASLM------------SAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 307 ~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
|.++++.|++...++. ......++.+++.+++++++||+|||++++.
T Consensus 312 p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~ 370 (502)
T TIGR00887 312 KVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLM 370 (502)
T ss_pred HHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Confidence 8888888886543211 2334455677788999999999999998754
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=250.87 Aligned_cols=321 Identities=40% Similarity=0.726 Sum_probs=258.0
Q ss_pred CCChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCc--chhHHHHHHHHHHHHH
Q 041698 18 NLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDS--ETLTMFTSSLYLAALL 95 (355)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~l~~~~ 95 (355)
..............++.+..+++ +..+....+....++....... ..+. .+.+++.++..++..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~fg~~-g~~g~~s~~~~~~~~~~~~~~~------------~~~~~~~~~s~~~s~~~lga~~ 104 (513)
T KOG0254|consen 38 MISPFVILLALVAALGGLLFGYD-GDIGGISGALDFLQRFASLYDL------------STGEYSVRQGLLTSILNLGALV 104 (513)
T ss_pred cCceehHHHHHHHHHHHHHhCcc-cccccchhhHHHHHhccccccc------------ccchhHHHHHHHHHHHHHHHHH
Confidence 34456677788888899999998 4333333334444443221111 1122 5679999999999999
Q ss_pred HHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHH
Q 041698 96 SSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQ 175 (355)
Q Consensus 96 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 175 (355)
++++.|+++|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|......+.|++|..|++.||...+..+
T Consensus 105 g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~ 184 (513)
T KOG0254|consen 105 GSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQ 184 (513)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCC--CccHH
Q 041698 176 LSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGV--NDVEE 253 (355)
Q Consensus 176 ~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 253 (355)
....+|..++..++....+. . ++||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++... .+.+.
T Consensus 185 l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~ 262 (513)
T KOG0254|consen 185 LFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEV 262 (513)
T ss_pred HHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHH
Confidence 99999999996666665542 1 58999999999998888877888999999999999999999999999883 34444
Q ss_pred HHHHHHHHHHHhh---ccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHH
Q 041698 254 EFNDLVAASEASR---QVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIV 330 (355)
Q Consensus 254 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 330 (355)
+.++.......+. ..+..+.+++++...++......+..+.++++.+...+|.+.+++..|.+... .......++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v 341 (513)
T KOG0254|consen 263 ELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVV 341 (513)
T ss_pred HHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHH
Confidence 4444431111111 11224667776556677777888899999999999999999999998887655 6667778888
Q ss_pred HHHHhhhhhheecccCCccccccC
Q 041698 331 NVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 331 ~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
.+++.+++..+.||+|||++++.|
T Consensus 342 ~~~~t~~~~~lvd~~gRr~lll~s 365 (513)
T KOG0254|consen 342 NFLGTLVATYLVDRFGRRKLLLFG 365 (513)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHh
Confidence 999999999999999999998865
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=258.16 Aligned_cols=210 Identities=21% Similarity=0.286 Sum_probs=186.2
Q ss_pred ChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHh
Q 041698 20 TPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLV 99 (355)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~ 99 (355)
.+..+.+++++.++.+.++++...++.+ +|.+.+++ +++..+.+++.++++++.++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~i--lp~i~~~~------------------gls~~~~g~l~s~~~lG~iiG~li 221 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFV--LPSAEKDL------------------CIPDSGKGMLGLIVYLGMMVGAFF 221 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888889999998887766 66666555 889999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHH
Q 041698 100 ASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSIT 179 (355)
Q Consensus 100 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 179 (355)
+|+++||+|||++++++.++.++++++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.+++...+..
T Consensus 222 ~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~ 301 (742)
T TIGR01299 222 WGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWM 301 (742)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC----------ccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCC
Q 041698 180 VGILIANVLNYFFNKIHG----------GWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVN 249 (355)
Q Consensus 180 ~G~~~~~~i~~~~~~~~~----------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (355)
+|.++++.++..+....+ ..+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+
T Consensus 302 iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n 381 (742)
T TIGR01299 302 IGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381 (742)
T ss_pred HHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 999999988776653111 2479999999888887777777889999999999999999999999887655
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=243.87 Aligned_cols=320 Identities=38% Similarity=0.682 Sum_probs=238.0
Q ss_pred CChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHH
Q 041698 19 LTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSL 98 (355)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~ 98 (355)
..+..+..++++.++.+..+++...++.. ++....++.-+. +.+.+.+..+.+++.+++.++..++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~ 89 (481)
T TIGR00879 22 TYWKVALLSLIAAIGGLMFGYDTGVIGGA--LALPAFEFKFTS----------ANSDSYSSSLWGLVVSIFLVGGFIGAL 89 (481)
T ss_pred ccHHHHHHHHHHHHHHHhcccccchhhhh--hhcHHHHHhcCC----------cccCCCChhHHHHHHHHHHHHHHHHHH
Confidence 34555556666677778889998888776 455554442111 112246789999999999999999999
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHH
Q 041698 99 VASRVTRQFGRKLSMFFGGILFLAGALLNGFA---QAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQ 175 (355)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 175 (355)
++|+++||+|||++++++.++..++.+++.+. .+++.+++.|+++|++.+...+....++.|++|+++|++++++..
T Consensus 90 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 169 (481)
T TIGR00879 90 FAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQ 169 (481)
T ss_pred HhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHH
Confidence 99999999999999999999999999888654 345689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH---HHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccH
Q 041698 176 LSITVGILIANVLN---YFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVE 252 (355)
Q Consensus 176 ~~~~~G~~~~~~i~---~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (355)
.+..+|..+++.++ ....+ ..+||+.|++.++..++..+..+++||+|++...+++.+++.+..++....++.+
T Consensus 170 ~~~~~G~~~~~~~~~~~~~~~~---~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (481)
T TIGR00879 170 LAITFGILVAYGFGSGKVSLNN---TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGED 246 (481)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC---CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCc
Confidence 99999999999998 54444 4689999999776666666666778999988776666666555555444333222
Q ss_pred HHHHHH----HH-HHHHhhccccchhhhhccC--chhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHH
Q 041698 253 EEFNDL----VA-ASEASRQVEHPWKNLLQKK--YRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAV 325 (355)
Q Consensus 253 ~~~~~~----~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 325 (355)
.+..+. .. ...+.+..+..+.+.++.. ..++.++..++.++..........++.|++.++.|++..+.+....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 326 (481)
T TIGR00879 247 KELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSI 326 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHH
Confidence 111110 00 0011111122244444322 2345555556666666666677788889998999999988889999
Q ss_pred HHHHHHHHHhhhhhheecccCCcccccc
Q 041698 326 ITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 326 ~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+..++.+++.++.++++||++||+.+..
T Consensus 327 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 354 (481)
T TIGR00879 327 IVGAVNFAFTFVAIFLVDRFGRRPLLLI 354 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 9999999999999999999999987654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=228.05 Aligned_cols=265 Identities=19% Similarity=0.294 Sum_probs=216.3
Q ss_pred HHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhh
Q 041698 26 TCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTR 105 (355)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d 105 (355)
.++...++.|..+.+....... +|++.+++ |+|..+.|++.|.|.+++.+++++...+.|
T Consensus 14 ~l~aLa~~~F~igttEfv~~gL--Lp~iA~dl------------------~vs~~~aG~lis~yAl~~ai~ap~l~~lt~ 73 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGL--LPPIAADL------------------GVSEGAAGQLITAYALGVALGAPLLALLTG 73 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhc--hHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455556667777766666555 67776666 999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHH
Q 041698 106 QFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIA 185 (355)
Q Consensus 106 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~ 185 (355)
|+.||++++..+.+++++++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|
T Consensus 74 r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~G 153 (394)
T COG2814 74 RLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLG 153 (394)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Q 041698 186 NVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEA 264 (355)
Q Consensus 186 ~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (355)
.+++.++.+ .+|||..|++.+.++++.++.. ..+| |+. .
T Consensus 154 vPLGt~ig~---~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~-----------------------------------~ 193 (394)
T COG2814 154 VPLGTFLGQ---LFGWRATFLAIAVLALLALLLLWKLLP--PSE-----------------------------------I 193 (394)
T ss_pred ccHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc-----------------------------------C
Confidence 999999999 6889999999999988876654 5678 210 0
Q ss_pred hhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecc
Q 041698 265 SRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDK 344 (355)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 344 (355)
+++.+.+.++.++..++++.+.......+.....+..+++.-|++.+..|++.+..++....++++.++|..+.|++.||
T Consensus 194 ~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr 273 (394)
T COG2814 194 SGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR 273 (394)
T ss_pred CCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 01111222222232333444444444444444555566777788778899999999999999999999999999999999
Q ss_pred cCCcccc
Q 041698 345 WGRRFLF 351 (355)
Q Consensus 345 ~g~r~~~ 351 (355)
+.|+.+
T Consensus 274 -~~~~~l 279 (394)
T COG2814 274 -GPRRAL 279 (394)
T ss_pred -cchhHH
Confidence 666554
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-32 Score=230.09 Aligned_cols=293 Identities=18% Similarity=0.202 Sum_probs=224.3
Q ss_pred CChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHH
Q 041698 19 LTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSL 98 (355)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~ 98 (355)
.+++++.+...+.+++..+++..-.++.+ +|...++. ++|.+|.|++.+++.+.|+++..
T Consensus 23 y~~~r~qif~~~fiGYa~fYl~RknF~~a--~p~l~e~~------------------~lsk~~lG~i~s~f~i~YG~sKf 82 (448)
T COG2271 23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLA--MPALIEDG------------------GLSKTQLGILGSAFSITYGVSKF 82 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhc--cHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777777776655 55555554 89999999999999999999999
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHH
Q 041698 99 VASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSI 178 (355)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 178 (355)
+.|.++||.++|+.+.+++++.++.+++++++++.+.+.++.+++|..+|.-+|++...++.|+|+++||+..++++++-
T Consensus 83 ~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~sh 162 (448)
T COG2271 83 VMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSH 162 (448)
T ss_pred HhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--HHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHH
Q 041698 179 TVGILIANVLN--YFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEF 255 (355)
Q Consensus 179 ~~G~~~~~~i~--~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (355)
++|+.+.|++. +++.. +.+||..|++.++++++..+.. +..+|+|+.. ..+..|+..
T Consensus 163 NiGGal~~~~~~la~~~~---~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~-----------------GLP~ie~~~ 222 (448)
T COG2271 163 NIGGALAPLVALLAFFAF---HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE-----------------GLPPIEEYR 222 (448)
T ss_pred hcccchHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc-----------------CCCCHHHhh
Confidence 99999999999 77776 5689999999999988766554 5578887521 011111111
Q ss_pred HHHHHH-HHHhhccccchhhhh-ccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCCCcHHHHHHHHHHHHHH
Q 041698 256 NDLVAA-SEASRQVEHPWKNLL-QKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFGSDASLMSAVITGIVNV 332 (355)
Q Consensus 256 ~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 332 (355)
++..+. +++++.+.-+.++++ +.....+.++..++..+.....=+.+..|.|.++. ..|++...+.+..+.+-++++
T Consensus 223 ~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl 302 (448)
T COG2271 223 GDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGL 302 (448)
T ss_pred cCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence 111111 111111112233333 32223333444444444444455677788887775 589999999999999999999
Q ss_pred HHhhhhhheeccc--CCcccc
Q 041698 333 VATMVSIYGVDKW--GRRFLF 351 (355)
Q Consensus 333 ~~~~~~g~l~d~~--g~r~~~ 351 (355)
+|++++|+++||+ |||.++
T Consensus 303 ~G~Ll~GwlSDklfkgrR~p~ 323 (448)
T COG2271 303 PGTLLAGWLSDKLFKGRRGPM 323 (448)
T ss_pred HHHHHHHHHHHHhcccccchH
Confidence 9999999999997 566554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-31 Score=237.68 Aligned_cols=297 Identities=16% Similarity=0.175 Sum_probs=215.6
Q ss_pred HHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhh
Q 041698 24 LVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRV 103 (355)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l 103 (355)
+.......++++.+++|....+.+ .|.+ ++|+|++..+.+++.+++++++.+++++.|++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~--~~~l------------------~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l 66 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFA--GLTM------------------GKDLGLSATMFGLAATLFYAAYVICGIPSNIM 66 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHH--HHhh------------------HhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 445556666777888888887766 3433 44559999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHH
Q 041698 104 TRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGIL 183 (355)
Q Consensus 104 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 183 (355)
+||+|||+++..+.++.+++++++++++|++.+++.|+++|++.+...+....++.|++|+++|+++++++..+..+|..
T Consensus 67 ~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~ 146 (412)
T TIGR02332 67 LAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMA 146 (412)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC---CCccchHHHHhhhHHHHHHHHH-HhccccCChhHHHhcCChHHHHHHHH-HHhCCC-ccHHHHHH
Q 041698 184 IANVLNYFFNKI---HGGWGWRLSLGGAMVPALIITV-GSMILPDTPNSIIERGRHEEAREELR-KVRGVN-DVEEEFND 257 (355)
Q Consensus 184 ~~~~i~~~~~~~---~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 257 (355)
+++.+++.+.+. .+..+||+.|++.+++.++..+ ..+++||+|+.. +...++.++..+ ...... +.++..
T Consensus 147 ~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~-- 222 (412)
T TIGR02332 147 LGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLTLEQPE-- 222 (412)
T ss_pred HHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhccccccccc--
Confidence 999999987642 1236899999998888765544 446679988531 100111111111 111000 000000
Q ss_pred HHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHh
Q 041698 258 LVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTI--GFGSDASLMSAVITGIVNVVAT 335 (355)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~ 335 (355)
+. .++ ++...+..++....+. ++...+..++.......+..|.|.++++. +++..+++.......++.+++.
T Consensus 223 --~~--~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~ 296 (412)
T TIGR02332 223 --GA--FAH-AAMPQRSMLREIFTPA-IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGM 296 (412)
T ss_pred --cc--ccc-ccccHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHH
Confidence 00 000 0111111112112222 33334444444455666778888888774 6677888889999999999999
Q ss_pred hhhhheecccCCccc
Q 041698 336 MVSIYGVDKWGRRFL 350 (355)
Q Consensus 336 ~~~g~l~d~~g~r~~ 350 (355)
++.|+++||+++|+.
T Consensus 297 l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 297 IWWSRHSDRLKERKH 311 (412)
T ss_pred HHHHHHhcccCccHH
Confidence 999999999997764
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-31 Score=243.12 Aligned_cols=288 Identities=17% Similarity=0.274 Sum_probs=208.2
Q ss_pred HHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCc--chhHH--HHHHHHHHHHHHHHhh
Q 041698 25 VTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDS--ETLTM--FTSSLYLAALLSSLVA 100 (355)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~--~~s~~~l~~~~~~~~~ 100 (355)
.......++.++++||..+++.. .|.+.++++++ .+. ...+. +.++.++++.+++++.
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~--~~~i~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~ig~~~~ 77 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFV--AYALGKVFFPG----------------ADPSVQMIAALATFSVPFLIRPLGGLFF 77 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhCCC----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778899999999998877 66666666421 111 11222 2578889999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHH--------HHHHHHHhhhcccccccchhhhhhhcCCCCcccchhh
Q 041698 101 SRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWM--------LIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNI 172 (355)
Q Consensus 101 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 172 (355)
|+++||+|||+++.++.++++++++++++++|++. ++++|+++|++.|+.++....++.|++|+++|++..+
T Consensus 78 G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~ 157 (490)
T PRK10642 78 GMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGS 157 (490)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHH
Confidence 99999999999999999999999999999999874 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-----CCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhC
Q 041698 173 GFQLSITVGILIANVLNYFFNKI-----HGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRG 247 (355)
Q Consensus 173 ~~~~~~~~G~~~~~~i~~~~~~~-----~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 247 (355)
+...+..+|..+++.+...+... ..+++||+.|++.++++++.++....+||+|++...+++.++..+
T Consensus 158 ~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~------- 230 (490)
T PRK10642 158 WLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR------- 230 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-------
Confidence 99988888888888666544321 114799999999877666555555678999986532221111000
Q ss_pred CCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCCCcHHHHHHHH
Q 041698 248 VNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFGSDASLMSAVI 326 (355)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~ 326 (355)
+...+.++.++++++++ ..+. +.......+.....++....+.|.+++ ..|++..+.......
T Consensus 231 --------------~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~ 294 (490)
T PRK10642 231 --------------EGLQDGPKVSFKEIATK-HWRS-LLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIA 294 (490)
T ss_pred --------------ccccccccCCHHHHHHH-hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 00001112345555543 2222 222222222223344556667777774 578888877777788
Q ss_pred HHHHHHHHhhhhhheecccCCcccccc
Q 041698 327 TGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 327 ~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
..++.+++.++.|+++||+|||+.+..
T Consensus 295 ~~~~~~~~~~~~g~l~dr~grr~~~~~ 321 (490)
T PRK10642 295 IMIGMLFVQPVMGLLSDRFGRRPFVIL 321 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 888899999999999999999987654
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=236.16 Aligned_cols=280 Identities=19% Similarity=0.203 Sum_probs=203.0
Q ss_pred hhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcch---hHHHHHHHHHHHHHHH
Q 041698 21 PYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSET---LTMFTSSLYLAALLSS 97 (355)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~~~s~~~l~~~~~~ 97 (355)
.+.+..+....++.++++||...++.. .|.+.++++++ +.+..+ .+.+.+..+++..+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ig~ 80 (432)
T PRK10406 18 RRRIWAIVGASSGNLVEWFDFYVYSFC--SLYFAHIFFPS---------------GNTTTQLLQTAGVFAAGFLMRPIGG 80 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCC---------------CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556677889999999998766 66777776432 233343 3444555666666999
Q ss_pred HhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHhhhcccccccchhhhhhhcCCCCcccc
Q 041698 98 LVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIW--------MLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGA 169 (355)
Q Consensus 98 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~ 169 (355)
+++|+++||+|||+++.++.++++++++++++++++. .++++|+++|++.|+.++...+++.|++|+++|++
T Consensus 81 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 160 (432)
T PRK10406 81 WLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF 160 (432)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccH
Confidence 9999999999999999999999999999999988764 68999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCC-----CccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHH
Q 041698 170 LNIGFQLSITVGILIANVLNYFFNKIH-----GGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRK 244 (355)
Q Consensus 170 ~~~~~~~~~~~G~~~~~~i~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 244 (355)
..++...+...|.++++.+...+.... ..++||+.|++.++++++.+.....+||+|++.. +
T Consensus 161 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~------- 227 (432)
T PRK10406 161 YASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET------R------- 227 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH------h-------
Confidence 999999888888888887765543211 1369999999888877766555556777764210 0
Q ss_pred HhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHH
Q 041698 245 VRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMS 323 (355)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 323 (355)
+++++.+++++++.+ +.+.......+......+.+..|.|.++ ++.|++..+.+..
T Consensus 228 --------------------~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~ 284 (432)
T PRK10406 228 --------------------ALKEAGSLKGLWRNR---RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGI 284 (432)
T ss_pred --------------------hhcccccHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 000112345555422 2222222222222233444566777666 4578988888888
Q ss_pred HHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 324 AVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 324 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.....+...++..+.|+++||++||+.+.+
T Consensus 285 ~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~ 314 (432)
T PRK10406 285 MTAALFVFMLIQPLIGALSDKIGRRTSMLC 314 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 888888888889999999999999986543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-30 Score=230.50 Aligned_cols=301 Identities=20% Similarity=0.236 Sum_probs=215.4
Q ss_pred CChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHH
Q 041698 19 LTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSL 98 (355)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~ 98 (355)
..++.+.....+.++.+.++++....+++ .|.+.+++ |++..+.+++.+++.++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~ 65 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV--LAEVAGEF------------------GLTTVDAASLISAALISRWFGAL 65 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCChhhHHHHHHHHHHHHHHHHH
Confidence 34455666777788888999988887666 55555555 99999999999999999999999
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHH
Q 041698 99 VASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSI 178 (355)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 178 (355)
+.|+++||+|||++++++.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+.
T Consensus 66 ~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 145 (405)
T TIGR00891 66 MFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGY 145 (405)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHH
Q 041698 179 TVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDL 258 (355)
Q Consensus 179 ~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (355)
.+|..+++.+++.+.+..+ .+||+.|++.+++.++..+....+||++++...+++.++..+..++..+.+...
T Consensus 146 ~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 218 (405)
T TIGR00891 146 AVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRI------ 218 (405)
T ss_pred HHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhh------
Confidence 9999999999998876321 359999988766666555555667888765332221111111111111100000
Q ss_pred HHHHHHhhccccchhhhhcc-CchhHHHH-HHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHh
Q 041698 259 VAASEASRQVEHPWKNLLQK-KYRPHLTM-AVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMSAVITGIVNVVAT 335 (355)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 335 (355)
+...+.......+. ...+..+. ......+.... ......+.|.+. ++.|++..+.+.......++.+++.
T Consensus 219 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~ 291 (405)
T TIGR00891 219 ------ANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGG 291 (405)
T ss_pred ------hhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 00000000001111 11111111 11111111111 122333445444 5689999999999999999999999
Q ss_pred hhhhheecccCCcccccc
Q 041698 336 MVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 336 ~~~g~l~d~~g~r~~~~~ 353 (355)
++.+++.||++||+.+..
T Consensus 292 ~~~g~l~dr~g~~~~~~~ 309 (405)
T TIGR00891 292 CVFGFLGDWLGRRKAYVC 309 (405)
T ss_pred HHHHHHHHHhCchhhhHH
Confidence 999999999999987653
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-35 Score=269.14 Aligned_cols=314 Identities=36% Similarity=0.752 Sum_probs=245.3
Q ss_pred HhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhch
Q 041698 30 AAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGR 109 (355)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr 109 (355)
+.++.+.+|||.+.++.......+...+..+.. ..+.+.+..+.+++.++..+|..+|++++|+++||+||
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GR 75 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSS---------ESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGR 75 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccc---------cccccchHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 445668999999988766434333333321111 11112255688999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHH
Q 041698 110 KLSMFFGGILFLAGALLNGFAQ---AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIAN 186 (355)
Q Consensus 110 r~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 186 (355)
|+.+.++.++..+++++.++++ +++.+.++|+++|++.|...+....++.|..|+++|++..++...+..+|.+++.
T Consensus 76 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~ 155 (451)
T PF00083_consen 76 KPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLAS 155 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhh
Q 041698 187 VLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASR 266 (355)
Q Consensus 187 ~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (355)
.++.......++++||+.+.+..+++++..+..+++||||+|+..++|.+|+++.+++.++.+..+++.++..++.++.+
T Consensus 156 ~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (451)
T PF00083_consen 156 LIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQ 235 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccccc
Confidence 88776644333457999999999998877777788999999999999999999998887665544444444333333333
Q ss_pred ccccchhhhhccCc-hhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheeccc
Q 041698 267 QVEHPWKNLLQKKY-RPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKW 345 (355)
Q Consensus 267 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 345 (355)
+.+..++++++.+. +++......+..+....+.....++.+.+.++.+.+.. ........+..+++.+++.++.||+
T Consensus 236 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (451)
T PF00083_consen 236 ESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF 313 (451)
T ss_pred ccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 33356777776644 44555555565666666667778888888888777766 3344556677888888888999999
Q ss_pred CCccccccC
Q 041698 346 GRRFLFLEG 354 (355)
Q Consensus 346 g~r~~~~~~ 354 (355)
|||++++.+
T Consensus 314 GRr~~~i~~ 322 (451)
T PF00083_consen 314 GRRKLLIIG 322 (451)
T ss_pred ccccccccc
Confidence 999888765
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=229.21 Aligned_cols=288 Identities=16% Similarity=0.216 Sum_probs=211.9
Q ss_pred hhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhh
Q 041698 21 PYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVA 100 (355)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~ 100 (355)
+.++.....+.++.+.++++.....+. +|.+.+++ |+|..+.+++.+++.+++.+++++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~------------------~~s~~~~~~~~~~~~~~~~l~~~~~ 73 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYI--MYLIKADL------------------GLTDMEGAFLATAAFIGRPFGGALF 73 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777778888888776554 45554444 9999999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHH
Q 041698 101 SRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITV 180 (355)
Q Consensus 101 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 180 (355)
|+++||+|||+++.++.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+
T Consensus 74 g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 153 (426)
T PRK12307 74 GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGI 153 (426)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHH
Q 041698 181 GILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVA 260 (355)
Q Consensus 181 G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (355)
|.++++.+.+.+.+ ..+||+.|++..+..++.+......||++++...+.+. .++..
T Consensus 154 g~~~~~~l~~~l~~---~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~~-------- 210 (426)
T PRK12307 154 GNIIAAYFMPSFAE---AYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGKHS-------- 210 (426)
T ss_pred HHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------ccccc--------
Confidence 99999999888876 56899999875544433332233356665432111000 00000
Q ss_pred HHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhh
Q 041698 261 ASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIY 340 (355)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 340 (355)
+...+..+.+++++++++..+........ .+........+..+.|.+.++.|+++...+.......++.+++.++.++
T Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~ 288 (426)
T PRK12307 211 -QSAWSVFSLSMKGLFNRAQFPLTLCVFIV-LFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGL 288 (426)
T ss_pred -ccchhhhhHHHHHHHhhchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011234455554433332222222 2222222233455677777778999888898889999999999999999
Q ss_pred eecccCCcccccc
Q 041698 341 GVDKWGRRFLFLE 353 (355)
Q Consensus 341 l~d~~g~r~~~~~ 353 (355)
+.||++||+.+..
T Consensus 289 l~dr~~~~~~~~~ 301 (426)
T PRK12307 289 CADRIGLKKTFSI 301 (426)
T ss_pred HHHHhccHHHHHH
Confidence 9999999987653
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=234.96 Aligned_cols=273 Identities=20% Similarity=0.372 Sum_probs=208.1
Q ss_pred cccccccccCC---cchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 041698 68 NESTNQYCQYD---SETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLG 144 (355)
Q Consensus 68 ~~~~~~~~~~s---~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 144 (355)
.+.+.+|+|++ ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.++++|++.|
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G 191 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45678888999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+. +||+.+++.+++.++..+..+++||
T Consensus 192 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~~e 265 (505)
T TIGR00898 192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFVPE 265 (505)
T ss_pred hhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999887664 3999999998887777766778999
Q ss_pred ChhHHHhcCChHHHHHHHHHHhCCCcc--HHHHHHHH-HHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccc
Q 041698 225 TPNSIIERGRHEEAREELRKVRGVNDV--EEEFNDLV-AASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINV 301 (355)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (355)
+|+|+..+++.+++.+.+++..+.+.. ..+..... ++++.+++++.+.+++++.+..+...+.....++....
T Consensus 266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---- 341 (505)
T TIGR00898 266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF---- 341 (505)
T ss_pred ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH----
Confidence 999999999998888777665543321 11111111 11111112234667777665544444433333332211
Q ss_pred hHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 302 IMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
..+..+......+.+ ........++..+++.++.+++.||+|||+.+.+
T Consensus 342 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~ 390 (505)
T TIGR00898 342 SYYGLVLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAA 390 (505)
T ss_pred HHHHHhccccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 112222223333433 2344556678889999999999999999987654
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=225.56 Aligned_cols=277 Identities=19% Similarity=0.219 Sum_probs=214.4
Q ss_pred hHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhh
Q 041698 22 YVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVAS 101 (355)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g 101 (355)
+.+.....+.+..+.+++|....+.. .|.+.+++ |+|..+.+++.+++.++..+++++.|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~~~g 71 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVA--APRMAQEF------------------GLDVAQMGWAFSAGILGLLPGALLGG 71 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777888888999999887766 56666665 89999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHH
Q 041698 102 RVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVG 181 (355)
Q Consensus 102 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 181 (355)
+++||+|||+++..+.++..++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|
T Consensus 72 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 151 (406)
T PRK11551 72 RLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG 151 (406)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH-HhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHH
Q 041698 182 ILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV-GSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVA 260 (355)
Q Consensus 182 ~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (355)
..+++.++..+.+ ..+||+.|++.++..++..+ ...++||+|++...+.+.++..
T Consensus 152 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------------- 207 (406)
T PRK11551 152 GALASVIGVLAAG---DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA--------------------- 207 (406)
T ss_pred HHHHHHHHHHHcc---ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh---------------------
Confidence 9999999887766 56899999887766555443 3456788876432211100000
Q ss_pred HHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhh
Q 041698 261 ASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIY 340 (355)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 340 (355)
......++....++.. ......+...........+.|.+.++.|+++.+.+.......++.+++.++.|+
T Consensus 208 ---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~ 277 (406)
T PRK11551 208 ---------PVLRALFGEGRATATL-LLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGA 277 (406)
T ss_pred ---------hhHHHHhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0000111111111111 111112222223344556778888889999999999999999999999999999
Q ss_pred eecccCCccccc
Q 041698 341 GVDKWGRRFLFL 352 (355)
Q Consensus 341 l~d~~g~r~~~~ 352 (355)
+.||++||+.+.
T Consensus 278 l~dr~g~~~~~~ 289 (406)
T PRK11551 278 LMDRLRPRRVVL 289 (406)
T ss_pred HHHHHhHHHHHH
Confidence 999999988764
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=220.75 Aligned_cols=238 Identities=14% Similarity=0.155 Sum_probs=184.6
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
++++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++++++|++.++++|+++|++.+...
T Consensus 36 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 115 (390)
T PRK03545 36 AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFW 115 (390)
T ss_pred HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34449999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~ 230 (355)
+...+++.|++|+++|++++++...+.++|..++|++++.+.+ ..+||+.|++.+++.++..+.. ..+||+|+.
T Consensus 116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~---~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-- 190 (390)
T PRK03545 116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ---YLGWRTTFLAIGGGALITLLLLIKLLPLLPSE-- 190 (390)
T ss_pred HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH---HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--
Confidence 9999999999999999999999999999999999999999877 5789999999888766654433 345665320
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF 310 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
+.++ .++.++.++++..+...... ++..........+..+++.
T Consensus 191 ---~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~ 233 (390)
T PRK03545 191 ---HSGS-------------------------------LKSLPLLFRRPALVSLYLLT---VVVVTAHFTAYSYIEPFVQ 233 (390)
T ss_pred ---Ccch-------------------------------HHHHHHHHhCcHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 0000 00122333333222212111 1111111122233344444
Q ss_pred HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccc
Q 041698 311 NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLF 351 (355)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 351 (355)
++.|+++.+++.......++.++++++.+++.||+++|+..
T Consensus 234 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~ 274 (390)
T PRK03545 234 QVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL 274 (390)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 55789999999999999999999999999999999987653
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=223.25 Aligned_cols=280 Identities=18% Similarity=0.267 Sum_probs=195.2
Q ss_pred HHHHHHHhhhhhhhhccccccccccCchhh-hhhhcccccccccccccccccccCCcchhHHHH-----HHHHHHHHHHH
Q 041698 24 LVTCIVAAMGGLIFGYDIGISGGVTSMPSF-LKKFFPSVYRKQQANESTNQYCQYDSETLTMFT-----SSLYLAALLSS 97 (355)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-----s~~~l~~~~~~ 97 (355)
+.......++.++++||...++.. .|.+ .+++++ +.++. .+++. ++.++++.+++
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~~~~~~g~ 81 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGIT--AALVFNREFFP----------------QVSPA-MGTLAAFATFGVGFLFRPLGG 81 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCC----------------CCCcH-HHHHHHHHHHHHHHHHHhhHH
Confidence 345666777889999999987765 4433 334432 23333 34433 45667788999
Q ss_pred HhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHhhhcccccccchhhhhhhcCCCCcccc
Q 041698 98 LVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIW--------MLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGA 169 (355)
Q Consensus 98 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~ 169 (355)
++.|+++||+|||++++++.++++++++++++++++. .++++|+++|++.|..++....++.|++|+++|++
T Consensus 82 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~ 161 (438)
T PRK09952 82 VVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAF 161 (438)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcH
Confidence 9999999999999999999999999999999999987 58899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCC-----CccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHH
Q 041698 170 LNIGFQLSITVGILIANVLNYFFNKIH-----GGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRK 244 (355)
Q Consensus 170 ~~~~~~~~~~~G~~~~~~i~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 244 (355)
..+....+..+|.+++..+...+.... .+++||+.|++.+++.++........||+|++...+++.++
T Consensus 162 ~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~------- 234 (438)
T PRK09952 162 YSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA------- 234 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc-------
Confidence 999999999999999887776654321 14799999998887765554444567888765322111000
Q ss_pred HhCCCccHHHHHHHHHHHHHhhccccchh-hhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHH
Q 041698 245 VRGVNDVEEEFNDLVAASEASRQVEHPWK-NLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLM 322 (355)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~ 322 (355)
.+++.+.. .+++.+ +.+.......++.....+....+.|.+. ++.|++......
T Consensus 235 ---------------------~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~ 290 (438)
T PRK09952 235 ---------------------AKKRIPVIEALLRHP---GAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLN 290 (438)
T ss_pred ---------------------ccccCCHHHHHHHch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 00011111 122222 2222222222222223344455666555 457887766555
Q ss_pred HHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 323 SAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 323 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.....++..+++.++.|+++||++||+.+..
T Consensus 291 ~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~ 321 (438)
T PRK09952 291 IGLLVGGLSCLTIPCFAWLADRFGRRRVYIT 321 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 5556677788889999999999999987653
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-29 Score=222.10 Aligned_cols=302 Identities=20% Similarity=0.307 Sum_probs=214.5
Q ss_pred HHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhh
Q 041698 23 VLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASR 102 (355)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~ 102 (355)
.+.....+.+..+..+++....+.. +|.+.+++ |.+..+.+++.+.+.++..++.++.|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~ 74 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFA--APAISAEW------------------GLDPVQLGFLFSAGLIGMAFGALFFGP 74 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--HHHHhhcc------------------CCCHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444444555566666666554443 45554444 889999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHH
Q 041698 103 VTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGI 182 (355)
Q Consensus 103 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 182 (355)
++||+|||+.+..+.++.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.
T Consensus 75 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 154 (398)
T TIGR00895 75 LADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGA 154 (398)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccchHHHHhhhHHHHHHH-HHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041698 183 LIANVLNYFFNKIHGGWGWRLSLGGAMVPALII-TVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAA 261 (355)
Q Consensus 183 ~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (355)
.+++.+++.+.+ ..+|++.+++.++..++. .+...++||++++...+ +.++..+..++.......+.+. +..+.
T Consensus 155 ~~~~~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 229 (398)
T TIGR00895 155 AVGGFLAGWLIP---VFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-ALPEQ 229 (398)
T ss_pred HHHHHHHHHHhh---cccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-ccccc
Confidence 999999999887 568999998876554443 34456678887665443 3333333222222111100000 00000
Q ss_pred HHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhhe
Q 041698 262 SEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYG 341 (355)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 341 (355)
++.++..+...+.+++.+..++.. ......+...........+.|++.++.|+++.+.+.......++.+++.++.+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (398)
T TIGR00895 230 KATQGTKRSVFKALFQGKTARITV-LLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWL 308 (398)
T ss_pred ccccchhhHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111122233322222222 2222223333344556667788888899999999999999999999999999999
Q ss_pred ecccCCccc
Q 041698 342 VDKWGRRFL 350 (355)
Q Consensus 342 ~d~~g~r~~ 350 (355)
+||+++|+.
T Consensus 309 ~~~~~~~~~ 317 (398)
T TIGR00895 309 ADRLGPRVT 317 (398)
T ss_pred HhhcchHHH
Confidence 999998844
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=231.66 Aligned_cols=295 Identities=14% Similarity=0.037 Sum_probs=208.2
Q ss_pred hhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhh
Q 041698 21 PYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVA 100 (355)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~ 100 (355)
+..+.......++++....|...++.. +|.+.+++ |++..+.|++.+++.+++.+++++.
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~--~~~i~~~~------------------~~s~~~~g~~~s~~~~~~~~~~~~~ 84 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAA--QNDMISTY------------------GLSTTELGMIGLGFSITYGVGKTLV 84 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhh--hHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 334555666667777777788777766 56665555 9999999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHH
Q 041698 101 SRVTRQFGRKLSMFFGGILFLAGALLNGF-----AQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQ 175 (355)
Q Consensus 101 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 175 (355)
|+++||+|||+++.++.++++++.++.++ +++++.+++.|+++|++.+...+....++.|++|+++|+++++++.
T Consensus 85 G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~ 164 (467)
T PRK09556 85 GYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWN 164 (467)
T ss_pred hhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeee
Confidence 99999999999999998888887776665 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHH
Q 041698 176 LSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEE 254 (355)
Q Consensus 176 ~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (355)
.+.++|.++++.++..+.+.....+||..|.+.+++.++..+. +++.+++|+..... +.++ . ..+....++
T Consensus 165 ~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~---~~~~~~~~~- 236 (467)
T PRK09556 165 ISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---I---FGEPISEED- 236 (467)
T ss_pred cccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---c---ccCccchhh-
Confidence 9999999999998876654211126999888877776655444 34457666421110 0010 0 000000000
Q ss_pred HHHHHHHHHHhhccccchhhhh-c-cCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHH
Q 041698 255 FNDLVAASEASRQVEHPWKNLL-Q-KKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMSAVITGIVN 331 (355)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~ 331 (355)
+..++++.+..+.+ + ..+.+. ++...+..++..........|.|.++ +++|++..+++.......++.
T Consensus 237 --------~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~ 307 (467)
T PRK09556 237 --------KETESTDMTKWQIFVEYVLKNPV-IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGA 307 (467)
T ss_pred --------hccccccCcHHHHHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 00000011111111 1 111222 33333333333333445667788766 558999999999999999999
Q ss_pred HHHhhhhhheecccCCccccc
Q 041698 332 VVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 332 ~~~~~~~g~l~d~~g~r~~~~ 352 (355)
+++.++.|+++||++||+.+.
T Consensus 308 ~ig~~~~G~lsDr~g~r~~~~ 328 (467)
T PRK09556 308 LVGSLLWGWLSDLANGRRALV 328 (467)
T ss_pred HHHHHHHHHHHHHHCCCchHH
Confidence 999999999999999887654
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-29 Score=224.96 Aligned_cols=282 Identities=16% Similarity=0.190 Sum_probs=204.3
Q ss_pred HHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhh
Q 041698 23 VLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASR 102 (355)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~ 102 (355)
.+.......++.+...++...++.. +|.+.+++ |+|..+.+++.+.+.+++.+++++.|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~G~ 80 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAA--MPEMLADL------------------GLSRSDIGLLATLFYITYGVSKFVSGI 80 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHh--hHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3344444555666666666555444 56665554 999999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHH
Q 041698 103 VTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGI 182 (355)
Q Consensus 103 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 182 (355)
++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+.++|.
T Consensus 81 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~ 160 (434)
T PRK11663 81 VSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGG 160 (434)
T ss_pred HHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHH-HHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041698 183 LIANVLNYFFNKIHGGWGWRLSLGGAMVPALIIT-VGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAA 261 (355)
Q Consensus 183 ~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (355)
.+++.+.+.+.+ .++||+.|++.+++.++.. +..++++|+|++.......++.. +.+ + .
T Consensus 161 ~~~~~~~~~l~~---~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----------~~~----~---~ 220 (434)
T PRK11663 161 ALIPLVVGAIAL---HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH----------DAL----E---L 220 (434)
T ss_pred HHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc----------ccc----c---c
Confidence 999999999887 5789999998887755443 33456788775421111000000 000 0 0
Q ss_pred HHHhhccccchhhhhc--cCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhh
Q 041698 262 SEASRQVEHPWKNLLQ--KKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMSAVITGIVNVVATMVS 338 (355)
Q Consensus 262 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 338 (355)
.++.++++.+.++.++ ..+.++ ++...+..+........+..+.|.++ ++.|++..+++.......++.+++.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~ 299 (434)
T PRK11663 221 AQQQEGAGLSRKEILTKYVLLNPY-IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVA 299 (434)
T ss_pred chhccccCCChhhhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001112222221 111122 22222223333333445556777777 5679999999999999999999999999
Q ss_pred hheeccc
Q 041698 339 IYGVDKW 345 (355)
Q Consensus 339 g~l~d~~ 345 (355)
|+++||+
T Consensus 300 g~l~dr~ 306 (434)
T PRK11663 300 GWGSDKL 306 (434)
T ss_pred hhhHHHh
Confidence 9999998
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=229.16 Aligned_cols=301 Identities=11% Similarity=0.056 Sum_probs=216.8
Q ss_pred HHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhh
Q 041698 23 VLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASR 102 (355)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~ 102 (355)
.+..+..++++.+....|.++.+.+ +|++.+++ |.+.++.+|+.+++.+++.++.+++|+
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a--~p~i~~~l------------------~~s~~~~~~~~~~~~l~~~~~~~~~G~ 63 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVA--APTLSMTL------------------GASGNELLWIIDIYSLVMAGMVLPMGA 63 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888889999999998877 78877776 889999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcC-CCCcccchhhHHHHHHHHH
Q 041698 103 VTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMA-PYRFRGALNIGFQLSITVG 181 (355)
Q Consensus 103 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~G 181 (355)
++||+|||++++++.++..++++++++++|++.++++|+++|++.+...+.....+.+.+ |+++|+++++++.....+|
T Consensus 64 l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g 143 (495)
T PRK14995 64 LGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGG 143 (495)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888888787765 6789999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhcCChHHHHH------------HHHHHhCC
Q 041698 182 ILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIERGRHEEARE------------ELRKVRGV 248 (355)
Q Consensus 182 ~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~------------~~~~~~~~ 248 (355)
..+||.+++.+.+ +.+||+.|++...+.++..+. .+++||+++.. +++.+.... ..++.. .
T Consensus 144 ~~~gp~lgg~l~~---~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~-~ 217 (495)
T PRK14995 144 AAFGPLVGGILLE---HFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTAL-K 217 (495)
T ss_pred HHHHHHHHHHhhc---cCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhcc-c
Confidence 9999999999988 578999999887776655443 45567765321 111111100 000000 0
Q ss_pred CccHH-HHH--------HHHHHHHHhhccccch--hhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCC
Q 041698 249 NDVEE-EFN--------DLVAASEASRQVEHPW--KNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFG 316 (355)
Q Consensus 249 ~~~~~-~~~--------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~ 316 (355)
+.... ... ........+.+.+.+. .++++.+. +....+..+...........+.|.+++ .+|++
T Consensus 218 ~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s 293 (495)
T PRK14995 218 GFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRI----ILSGVVMAMTAMITLVGFELLMAQELQFVHGLS 293 (495)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 00000 000 0000000111111121 23333322 222222222222223344556666665 48999
Q ss_pred CcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 317 SDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+.+++....+..++..++.++.|++.||+|+|+.+..
T Consensus 294 ~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~ 330 (495)
T PRK14995 294 PLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATG 330 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 9999999999999999999999999999999887653
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=221.36 Aligned_cols=274 Identities=20% Similarity=0.316 Sum_probs=192.4
Q ss_pred HHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHH-HHHH-----HHHHHHHHHh
Q 041698 26 TCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMF-TSSL-----YLAALLSSLV 99 (355)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~s~~-----~l~~~~~~~~ 99 (355)
......++.+++++|...++.. .|.+.+++ +.+..+.+.+ .+.. .++..+++++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~--~~~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~ 75 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFY--ATAIAKTF------------------FPAGNEFASLMLTFAVFGAGFLMRPLGAIV 75 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCCCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4566777889999999998877 66666666 6666554433 3322 3333578999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHhhhcccccccchhhhhhhcCCCCcccchh
Q 041698 100 ASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIW--------MLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALN 171 (355)
Q Consensus 100 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~ 171 (355)
.|+++||+|||+.++.+.++..+++++++++++++ .++++|+++|++.+...+....++.|++|+++|++.+
T Consensus 76 ~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~ 155 (434)
T PRK15075 76 LGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT 155 (434)
T ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence 99999999999999999999999999999999877 4689999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCC-----CccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHh
Q 041698 172 IGFQLSITVGILIANVLNYFFNKIH-----GGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVR 246 (355)
Q Consensus 172 ~~~~~~~~~G~~~~~~i~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 246 (355)
++...+..+|..+++.+++.+.... ++++||+.|++..+...+........||++++...+
T Consensus 156 ~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-------------- 221 (434)
T PRK15075 156 SWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK-------------- 221 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh--------------
Confidence 9999988888888888777763211 147999999875543322222222234432110000
Q ss_pred CCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh-cCCCCcHHHHHHH
Q 041698 247 GVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT-IGFGSDASLMSAV 325 (355)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 325 (355)
.+.+.+..+++..+ .++.+...+...+...........+.|.++++ .|++..+.+....
T Consensus 222 -----------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~ 281 (434)
T PRK15075 222 -----------------HRPSMREIFRSLAA---NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTL 281 (434)
T ss_pred -----------------hccccccHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 00000111111111 12222222222222333455667778887765 7999888888888
Q ss_pred HHHHHHHHHhhhhhheecccCCcccccc
Q 041698 326 ITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 326 ~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+..++.+++.++.|+++||++||+.++.
T Consensus 282 ~~~~~~~~~~~~~g~l~Dr~g~r~~~~~ 309 (434)
T PRK15075 282 CVGVSNFIWLPIGGALSDRIGRRPVLIA 309 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 8899999999999999999999987654
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=221.93 Aligned_cols=307 Identities=12% Similarity=0.148 Sum_probs=215.9
Q ss_pred CChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhccc----ccccccccccccccccCCcchhHHHHHHHHHHHH
Q 041698 19 LTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPS----VYRKQQANESTNQYCQYDSETLTMFTSSLYLAAL 94 (355)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~ 94 (355)
..+..+.++..+.++......|....+.+ .+...++-.+. ...+.+..+..+.|++++..+.|++.+++.+++.
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~ 90 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLT--MVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQI 90 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEE--EEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHH
Confidence 33344555555666666667777776655 33333311000 0001111222344789999999999999999999
Q ss_pred HHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhh
Q 041698 95 LSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA--QAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNI 172 (355)
Q Consensus 95 ~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 172 (355)
+++++.|+++||+|||+++.++.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|+++++
T Consensus 91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 170 (465)
T TIGR00894 91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG 170 (465)
T ss_pred HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999998887654 558889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcc-chHHHHhhhHHHHHHHHHHhc-cccCChhHHHhcCChHHHHHHHHHHhCCCc
Q 041698 173 GFQLSITVGILIANVLNYFFNKIHGGW-GWRLSLGGAMVPALIITVGSM-ILPDTPNSIIERGRHEEAREELRKVRGVND 250 (355)
Q Consensus 173 ~~~~~~~~G~~~~~~i~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (355)
+...+..+|.++++++++.+.+ .. +||+.|++.+++.++..+..+ +.+|+|+... ...++.++..++.
T Consensus 171 ~~~~~~~~g~~i~~~l~~~l~~---~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~i~~~----- 240 (465)
T TIGR00894 171 MSTSGFQLGTFIFLPISGWLCE---SWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP--CISKFEKKYINSS----- 240 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---ccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC--CCCHHHHHHHHhh-----
Confidence 9999999999999999999887 43 899999998888776655544 4566664211 1111111100000
Q ss_pred cHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCCCcHHHHHHHHHHH
Q 041698 251 VEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFGSDASLMSAVITGI 329 (355)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~ 329 (355)
.++++.+.+.+.+++++++.+ .++...+..++.....+.+..|.|.+++ .+|++..+++....+..+
T Consensus 241 --------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~ 308 (465)
T TIGR00894 241 --------LQGQKGSTRQSLPIKAIPKSL----PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL 308 (465)
T ss_pred --------cccccCCCCCCCCHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHH
Confidence 000000111123455554432 2333344444444455666777787764 589999999999999999
Q ss_pred HHHHHhhhhhheecccCCcc
Q 041698 330 VNVVATMVSIYGVDKWGRRF 349 (355)
Q Consensus 330 ~~~~~~~~~g~l~d~~g~r~ 349 (355)
+.+++.+++|+++||+++|+
T Consensus 309 ~~~i~~~~~g~l~d~~~~~~ 328 (465)
T TIGR00894 309 FAWLCSIFAGYLADFLKSSK 328 (465)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999986553
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=218.48 Aligned_cols=317 Identities=17% Similarity=0.238 Sum_probs=217.6
Q ss_pred CCCCCCChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHH
Q 041698 14 EYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAA 93 (355)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~ 93 (355)
.+.++.++..+.....+.++.+.++++....++. +|.+.+++ |+|..+.+++.+.+.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~------------------~~s~~~~~~~~~~~~~~~ 68 (496)
T PRK03893 9 PWYRHLNRAQWKAFSAAWLGYLLDGFDFVLITLV--LTEVQGEF------------------GLTTVQAASLISAAFISR 68 (496)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHH
Confidence 3344444556666777777888888888776655 55555555 999999999999999999
Q ss_pred HHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhH
Q 041698 94 LLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIG 173 (355)
Q Consensus 94 ~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 173 (355)
.+++++.|+++||+|||++++++.++.+++.++.+++++++.+++.|++.|++.+...+....++.|++|+++|+++.++
T Consensus 69 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 148 (496)
T PRK03893 69 WFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGF 148 (496)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHH
Q 041698 174 FQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEE 253 (355)
Q Consensus 174 ~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (355)
...+..+|..+++.+.+.+.+ .++||+.|++.++..++.+.....+||++++...+++.++..+..+.....+....
T Consensus 149 ~~~~~~~g~~~~~~~~~~l~~---~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (496)
T PRK03893 149 LISGFSIGAVVAAQVYSLVVP---VWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRII 225 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHH
Confidence 999999999999999999887 67899999876554444444445578876543322211111111111100000000
Q ss_pred HH-HHHHH----HHHHhhccccchh-------------hh--hccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-Hh
Q 041698 254 EF-NDLVA----ASEASRQVEHPWK-------------NL--LQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NT 312 (355)
Q Consensus 254 ~~-~~~~~----~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 312 (355)
.. ..... ...........+. .. .....+++.........+..+........+.|.++ ++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~ 305 (496)
T PRK03893 226 NILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD 305 (496)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 00 00000 0000000000000 00 00011111122222222222222223455677777 47
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 313 IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.|++..+++...+...++.+++.++.|+++||++||+.+..
T Consensus 306 ~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~ 346 (496)
T PRK03893 306 LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVC 346 (496)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 89999999999999999999999999999999999987653
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=212.92 Aligned_cols=236 Identities=19% Similarity=0.255 Sum_probs=182.9
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
.+++|++.++.++..+++.++..+++++.|+++||+|||++++.+.++.+++.++++++++++.+++.|+++|++.+...
T Consensus 47 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 126 (394)
T PRK10213 47 AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFW 126 (394)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHH
Confidence 33449999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~ 230 (355)
+....++.|++|+++|+++.++...+.++|..++|.+++.+.+ ..+||+.|++.+++.++..+.. ...||+|+.
T Consensus 127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~---~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-- 201 (394)
T PRK10213 127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE---LIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-- 201 (394)
T ss_pred HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc--
Confidence 9999999999999999999999999999999999999999987 5789999998877665544333 335665421
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF 310 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
+ ++ .+.+..+.++++ +.+......+...........+..|.+.
T Consensus 202 ---~-~~------------------------------~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 244 (394)
T PRK10213 202 ---P-SH------------------------------QKQNTFRLLQRP---GVMAGMIAIFMSFAGQFAFFTYIRPVYM 244 (394)
T ss_pred ---c-cc------------------------------chhHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 000112233322 2222211111111111122233457777
Q ss_pred HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcc
Q 041698 311 NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRF 349 (355)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~ 349 (355)
++.|+++...+......+++.+++.++.+++.||.+++.
T Consensus 245 ~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~ 283 (394)
T PRK10213 245 NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLA 283 (394)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 788999999999999999999999999999999965443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=213.25 Aligned_cols=237 Identities=15% Similarity=0.204 Sum_probs=183.4
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
+|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+..
T Consensus 33 ~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 112 (382)
T PRK10091 33 VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVG 112 (382)
T ss_pred cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhcC
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIERG 233 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~ 233 (355)
..++.|++++++|+++++....+..+|..+++.+++.+.+ ..+||+.|++.+++.++..+. .+++||.++. .
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~----~ 185 (382)
T PRK10091 113 AIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ---EFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE----A 185 (382)
T ss_pred HHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh---hccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc----c
Confidence 8999999999999999999999999999999999998877 568999999888876655443 3457775420 0
Q ss_pred ChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhc
Q 041698 234 RHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTI 313 (355)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (355)
+ .+ . ++.+ +.++++ +.+.......+..........+..|++.+..
T Consensus 186 ~-~~-------------~-----------------~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (382)
T PRK10091 186 K-GG-------------L-----------------REQF-HFLRSP---APWLIFAATMFGNAGVFAWFSYIKPYMMFIS 230 (382)
T ss_pred c-cC-------------H-----------------HHHH-HHhcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 00 0 0001 111221 1122221111111111112233345555568
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 314 GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 314 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
|+++.+.+.......++.+++.++.+++.||+++|+.+..
T Consensus 231 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~ 270 (382)
T PRK10091 231 GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAV 270 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHH
Confidence 9999999999999999999999999999999999887653
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=210.11 Aligned_cols=239 Identities=13% Similarity=0.108 Sum_probs=183.5
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
++|+|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.++++|+++|++.+...
T Consensus 36 ~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~ 115 (393)
T PRK09705 36 RQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQ 115 (393)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHh
Confidence 33349999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc-cCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL-PDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~ 230 (355)
+....++.+++| ++|+++++.+..+..+|..+++.+++.+.+.. .+||+.+.+.++..++.....+.. ++.|+
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 189 (393)
T PRK09705 116 AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--ETWYQTLAWWALPAVVALFAWWWQSAREVA--- 189 (393)
T ss_pred hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHhcCCCc---
Confidence 999999999997 78999999999999999999999999887621 379998876555544333332222 12111
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF 310 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
++ + ++ +....+.+++ ++.+...+ ..+.....+.....+.|.++
T Consensus 190 -----~~-------------------------~-~~--~~~~~~~l~~---~~~~~l~~-~~~~~~~~~~~~~~~lp~~l 232 (393)
T PRK09705 190 -----SS-------------------------H-KT--TTTPVRVVFT---PRAWTLGV-YFGLINGGYASLIAWLPAFY 232 (393)
T ss_pred -----cc-------------------------c-CC--CcCCcccccC---HhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 00 0 00 0011112222 22222222 22222334445666777777
Q ss_pred HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 311 NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+++|++..+++....+..++.++++++.+++.||++||+..+.
T Consensus 233 ~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~ 275 (393)
T PRK09705 233 IEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLML 275 (393)
T ss_pred HHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 7899999999999999999999999999999999999887653
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=210.26 Aligned_cols=287 Identities=15% Similarity=0.052 Sum_probs=193.6
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHH
Q 041698 5 GGFDKGNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTM 84 (355)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 84 (355)
..|||||+.-+.++-++-.+.......++.+.....-...++. .+.+. ++|+|+|.+|.++
T Consensus 14 ~~w~pe~~~~w~~~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l--~~~~~-----------------~~~~~ls~~q~g~ 74 (462)
T PRK15034 14 RDWKPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAV--TVNLN-----------------KIGFNFTTDQLFL 74 (462)
T ss_pred cCCCCCChHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhh-----------------hhhcCCCHHHHHH
Confidence 6789998877665544422222333333222222222222222 22221 2256999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHhhhcccccccchhhhhh
Q 041698 85 FTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-----QAIWMLIVGRLLLGFGIGFANQSVPLYLS 159 (355)
Q Consensus 85 ~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~~~ 159 (355)
+.+++.+++.++.++.|++.||+|.|+++.++.++..+.++..+++ ++++.+++.|++.|++ +..++.....++
T Consensus 75 l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs 153 (462)
T PRK15034 75 LTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNIS 153 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 8999999999999998 778899999999
Q ss_pred hcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhh-----cC----------CCccchHHHHhhhHHHHHHHHHHhcc-cc
Q 041698 160 EMAPYRFRGALNIGFQLSITVGILIANVLNYFFN-----KI----------HGGWGWRLSLGGAMVPALIITVGSMI-LP 223 (355)
Q Consensus 160 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~-----~~----------~~~~~w~~~~~~~~~~~~~~~~~~~~-~~ 223 (355)
+|+|+++||+++++.....++|..+++++...+. .. .+..+||..+++..++.++..+..++ ++
T Consensus 154 ~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~ 233 (462)
T PRK15034 154 FFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMN 233 (462)
T ss_pred HHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999997666777766555544322 10 01345888887777766655544443 44
Q ss_pred CChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchH
Q 041698 224 DTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIM 303 (355)
Q Consensus 224 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (355)
+.|. ++...++..+.+|.++ .++. .+..++.+..+..+.
T Consensus 234 ~~~~-------------------------------------~~~~~~~~~~vlk~~~---~Wll-slly~~tFG~fvg~s 272 (462)
T PRK15034 234 DIAS-------------------------------------SRASIADQLPVLQRLH---LWLL-SLLYLATFGSFIGFS 272 (462)
T ss_pred Cccc-------------------------------------cccCHHHHHHHhCCCc---hhHH-HHHHHHHHHHHHHHH
Confidence 3321 0000111223333333 2333 333345555566677
Q ss_pred hcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 304 FYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 304 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.+.|++.++ .++.........+..+...+.++++|+++||+|+++++.+
T Consensus 273 ~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~ 321 (462)
T PRK15034 273 AGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLI 321 (462)
T ss_pred HHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHH
Confidence 788887765 3444433333445568888999999999999999987654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=208.70 Aligned_cols=235 Identities=12% Similarity=0.012 Sum_probs=170.3
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
++|+|+|..+.+++.+++.+++.+++++.|+++||+|||+++..+......+.+.....++++.++++|+++|++.+. .
T Consensus 18 ~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~ 96 (368)
T TIGR00903 18 AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-L 96 (368)
T ss_pred HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-H
Confidence 344499999999999999999999999999999999999887666555544433333347999999999999999986 5
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH-HhccccCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV-GSMILPDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~ 230 (355)
+.....++|++|+++|++++++...+..+|.+++++++..+.+ +.+||+.|++.++++++..+ ..+++||+|++..
T Consensus 97 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~---~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~ 173 (368)
T TIGR00903 97 LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT---AGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA 173 (368)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 5666667999999999999999999999999999999999987 57899999997777665544 4466899875421
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF 310 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
+..+ . ++ . .++++++++++. ++......++.....+.+..|.|.++
T Consensus 174 ---~~~~---------------~--~~-----~-----~~~~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~wlp~~L 219 (368)
T TIGR00903 174 ---EGFG---------------F--KD-----A-----VKEFGALAGRKD----LWIIGAILGFGVALFDNLAIWLEAAL 219 (368)
T ss_pred ---CCcc---------------h--HH-----H-----HHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 00 0 012445555433 23333334444455667778999999
Q ss_pred HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCc
Q 041698 311 NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 348 (355)
++.|++.. .+.......+.+.++ .++++||..||
T Consensus 220 ~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~ 253 (368)
T TIGR00903 220 RPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARA 253 (368)
T ss_pred HHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhh
Confidence 88888754 555555555555555 46788887654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=208.55 Aligned_cols=267 Identities=10% Similarity=0.107 Sum_probs=201.1
Q ss_pred HHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhh
Q 041698 26 TCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTR 105 (355)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d 105 (355)
....++++.+..+++....+.. +|.+.+++ |+|.++.+++.+.+.+++.+++++.|+++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~~------------------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d 67 (394)
T PRK03699 8 LTWISFLSYALTGALVIVTGMV--MGPIAEYF------------------NLPVSSMSNTFTFLNAGILISIFLNAWLME 67 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh--hHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677777776666655 56666555 999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHH
Q 041698 106 QFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIA 185 (355)
Q Consensus 106 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~ 185 (355)
|+|||+++..+.++.+++.++.+++++++.+++.|+++|++.+...+....++.|++|+++|++.++.......+|..++
T Consensus 68 r~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~ 147 (394)
T PRK03699 68 IIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIF 147 (394)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Q 041698 186 NVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEAS 265 (355)
Q Consensus 186 ~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (355)
|.+.+.+... ..+||+.|.+.+++.++..+..++ .+.|+. .+.+. + +.+
T Consensus 148 ~~~~~~l~~~--~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~-~-------------------------~~~ 196 (394)
T PRK03699 148 PIIAAYLLAR--SIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHAP-K-------------------------ADK 196 (394)
T ss_pred HHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccCc-c-------------------------ccC
Confidence 9988877542 358999999877766554443332 222210 00000 0 000
Q ss_pred hccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecc
Q 041698 266 RQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDK 344 (355)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 344 (355)
+. .+....++ ++...+..++.......+..|.|.+. +++|+++.+++...+...++..+++++.++++||
T Consensus 197 ~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr 267 (394)
T PRK03699 197 PV--------AKEKWGIG-VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF 267 (394)
T ss_pred cc--------ccccCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01111122 22222223333333445567778777 4579999999999999999999999999999999
Q ss_pred cCCccccc
Q 041698 345 WGRRFLFL 352 (355)
Q Consensus 345 ~g~r~~~~ 352 (355)
+++|+.+.
T Consensus 268 ~~~~~~l~ 275 (394)
T PRK03699 268 FDLQRILT 275 (394)
T ss_pred hchhhHHH
Confidence 99998765
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=213.29 Aligned_cols=259 Identities=17% Similarity=0.154 Sum_probs=193.0
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
++++|++..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++++++++++.++++|++.|++.+...
T Consensus 21 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 100 (399)
T TIGR00893 21 QEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFF 100 (399)
T ss_pred HHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhh
Confidence 34449999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~ 230 (355)
+....++.|++|+++|++.+++......+|..+++.+++.+.+ ..+||+.|++.+++.++..+.. +..||+|+..
T Consensus 101 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 176 (399)
T TIGR00893 101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI---HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA- 176 (399)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---hCCchHHHHHHHHHHHHHHHHhhheecCCCCcc-
Confidence 9999999999999999999999999999999999999998877 5689999998887766655444 4456655321
Q ss_pred hcCChHHHHHH-HHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHH
Q 041698 231 ERGRHEEAREE-LRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL 309 (355)
Q Consensus 231 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
+...++.++. .++... + .+.+++++.++...++.+++ ++ ++...+..+...........+.|.+
T Consensus 177 -~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (399)
T TIGR00893 177 -KWLTEEEKYIVVGGLLA--E--------QQGKGPSTPKKYQIKELLKD---RR-VWGLALGQFLVNIGLGFFLTWFPTY 241 (399)
T ss_pred -ccCCHHHHhhcchhhcc--c--------cccccccCCCccchHHHhcC---HH-HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1111111100 000000 0 00001111112223333332 22 2333333333334445556666766
Q ss_pred H-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcc
Q 041698 310 F-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRF 349 (355)
Q Consensus 310 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~ 349 (355)
. +..|+++.+.+.......++.+++.++.+++.||++||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6 457888889999999999999999999999999999986
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=214.09 Aligned_cols=298 Identities=17% Similarity=0.189 Sum_probs=211.7
Q ss_pred HHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh
Q 041698 27 CIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQ 106 (355)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr 106 (355)
...++++.+...+|....++. +|.+.+++ |.+..+.+++.+.+.++..++.++.|+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr 63 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVA--IPTIAGDL------------------GSSLSQVQWVITSYMLANAISIPLTGWLAKR 63 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHhc------------------CCChhhhhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445556677777877777655 66666665 8899999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHH
Q 041698 107 FGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIAN 186 (355)
Q Consensus 107 ~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 186 (355)
+|||++++++.++..++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.+++..+..+|..++|
T Consensus 64 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 143 (485)
T TIGR00711 64 FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGP 143 (485)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhcCChHHHHH------------HHHHHhCCCccHH
Q 041698 187 VLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIERGRHEEARE------------ELRKVRGVNDVEE 253 (355)
Q Consensus 187 ~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 253 (355)
.+++.+.+ +++||+.|++.+.+.++..+.. +++||+++. .+++.+.... ...+.......+.
T Consensus 144 ~~~~~l~~---~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 218 (485)
T TIGR00711 144 TLGGWIIE---NYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDS 218 (485)
T ss_pred ccHhHhcc---CcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCc
Confidence 99999887 6789999998877766555443 446665431 1111111110 0000000000000
Q ss_pred -HHHHH--------H--HHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh-cCCCCcHHH
Q 041698 254 -EFNDL--------V--AASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT-IGFGSDASL 321 (355)
Q Consensus 254 -~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 321 (355)
+.... . ...+..++++....++++.+..... ... .+...........+.|.++++ .|+++.+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g 294 (485)
T TIGR00711 219 NEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIG---CVY-MSLLGLGLYGSFYLLPLYLQQVLGYTALQAG 294 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHH---HHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 00000 0 0001111111111233333322222 222 222222233445566766654 799999999
Q ss_pred HHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 322 MSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
....+..++.+++.++.|++.||++||+.+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 326 (485)
T TIGR00711 295 LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTI 326 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 99999999999999999999999999987654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=207.10 Aligned_cols=253 Identities=18% Similarity=0.271 Sum_probs=208.1
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhcccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ--AIWMLIVGRLLLGFGIGF 149 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 149 (355)
+.++++|..+.+++.++++.|+.+++++.|+++||+|-|+++..+.++.++++++..++. +++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 568999999999999999999999999999999999999999999999999999999875 456789999999999999
Q ss_pred cccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc-cccCChhH
Q 041698 150 ANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM-ILPDTPNS 228 (355)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~e~~~~ 228 (355)
.+|+...+.++|.|++||++..++..++..+|.+++.++++.+.+. ..||+++|++.++++++..++++ +..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999999999999999999999999999883 27999999999999888777764 45777753
Q ss_pred HHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHH---HhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhc
Q 041698 229 IIERGRHEEAREELRKVRGVNDVEEEFNDLVAASE---ASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFY 305 (355)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
. +.-.++.++ .+.+.+. .+++.+.+++++++++ .++...+..++.......+..|
T Consensus 223 h--~~is~~El~----------------~I~~~k~~~~~~~~~~vP~~~i~ts~----~vwai~~~~f~~~~~~~~l~~y 280 (466)
T KOG2532|consen 223 H--PNISEKELK----------------YIEKGKSEAHVKKKPPVPYKAILTSP----PVWAIWISAFGGNWGFYLLLTY 280 (466)
T ss_pred C--CCCCHHHHH----------------HHHhcccccccCCCCCCCHHHHHcCH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111111 1111111 1111356788887764 3555555566666667788888
Q ss_pred HHHHHHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCc
Q 041698 306 APVLFNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 306 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 348 (355)
.|.|+++ +|++..+.|++.+++.+...+..+++|.++||+.+|
T Consensus 281 ~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~ 324 (466)
T KOG2532|consen 281 LPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR 324 (466)
T ss_pred hhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888865 899999999999999999999999999999998775
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-27 Score=208.32 Aligned_cols=239 Identities=15% Similarity=0.203 Sum_probs=185.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+...++++++.+++.|++.|++.+...+...
T Consensus 36 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 115 (385)
T TIGR00710 36 STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQ 115 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhcCC
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIERGR 234 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~ 234 (355)
.++.|++|+++|+++.++......+|..+++.+++.+.+ ..+||+.|++.++..++..+.. ++.||+++.. ++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 189 (385)
T TIGR00710 116 ALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV---WLSWHAIFAFLSLAGILLSALIFFILPETLPYE---AR 189 (385)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc---cc
Confidence 999999999999999999999999999999999998877 5689999998777766554443 4466654210 00
Q ss_pred hHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-Hhc
Q 041698 235 HEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTI 313 (355)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 313 (355)
++ .+ +..+.+++.++++..+........ ..........+.|.+. +++
T Consensus 190 -~~-------------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 237 (385)
T TIGR00710 190 -IQ-------------IS--------------TYFETFLLLLKSKMFWGYALIYGA----SFGGFFAFFSGAPFVYIDIM 237 (385)
T ss_pred -CC-------------HH--------------HHHHHHHHHHcCchhHHHHHHHHH----HHHHHHHHHHcChHHHHHHc
Confidence 00 00 000112233333322221111111 1112233444556555 468
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 314 GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 314 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
|+++.+.+.......++.+++.++.+++.||+++|+.+.
T Consensus 238 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 276 (385)
T TIGR00710 238 GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLR 276 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999999999999999987654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=208.75 Aligned_cols=244 Identities=17% Similarity=0.131 Sum_probs=181.3
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccc
Q 041698 73 QYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
+|+|+|..+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++++++++++.++++|++.|++.+..++
T Consensus 31 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 110 (377)
T TIGR00890 31 RYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYG 110 (377)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33499999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHh
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIE 231 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~ 231 (355)
.....+.|++| ++|+++.++...+.++|..+++.+.+.+.+ ..+||+.|++.+++.++..+.. ++++|+|+...
T Consensus 111 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~- 185 (377)
T TIGR00890 111 IALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN---LEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLI- 185 (377)
T ss_pred hHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHHheecCchhcc-
Confidence 88888899986 679999999999999998877666666655 4689999998888776655544 34554432100
Q ss_pred cCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH
Q 041698 232 RGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN 311 (355)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
+++ + +.+ +++.+.++.++++..+... ...+...........+.+.+.+
T Consensus 186 ~~~-~-------------~~~--------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 233 (377)
T TIGR00890 186 KTN-I-------------EVS--------------VKDYTVWEMLRTPQFWVLY----LSFFLNAVSGLLLIGLYKPYGQ 233 (377)
T ss_pred ccC-c-------------ccc--------------hhhhhHHHHHcCccHHHHH----HHHHHHhHHHHHHHHHHHHHHH
Confidence 000 0 000 0001122333333222211 1112221222223334455567
Q ss_pred hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 312 TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+.|.++.+.+.......++.++++++.+++.||++||+.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 275 (377)
T TIGR00890 234 SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSI 275 (377)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 788888888899999999999999999999999999987654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=212.34 Aligned_cols=289 Identities=16% Similarity=0.149 Sum_probs=220.0
Q ss_pred HHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhh
Q 041698 23 VLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASR 102 (355)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~ 102 (355)
.+.++..+++.++....|...++.... ..+++|.+....+.+.+.++++++++++.++++.
T Consensus 43 dl~i~~~~~~~y~~~~~d~~si~~a~l-------------------~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~ 103 (495)
T KOG2533|consen 43 DLFILPFLCYLYFHAYLDKSSIVNASL-------------------SGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGL 103 (495)
T ss_pred HHHHHHHHHHHHHHHhcchhcchhHHH-------------------cCCccccchhhhhhhhHHHHHHHHHHHHHhhHHH
Confidence 345555556666666666666544321 1246777899999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHH
Q 041698 103 VTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGI 182 (355)
Q Consensus 103 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 182 (355)
+.||++..+.+....+.+++..++....+|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++.+..++|.
T Consensus 104 L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~ 183 (495)
T KOG2533|consen 104 LGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGN 183 (495)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhh
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC---CccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHH
Q 041698 183 LIANVLNYFFNKIH---GGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDL 258 (355)
Q Consensus 183 ~~~~~i~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (355)
++|++++..+.+.. +..||||.|++.++++++..+. ++++|+.|....-.++ +|..-..++.++.+
T Consensus 184 i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~-~ek~~~~~~~~~~~--------- 253 (495)
T KOG2533|consen 184 IFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTD-EEKELVVERLRESP--------- 253 (495)
T ss_pred HHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccch-HHHHHHHHHHHhcc---------
Confidence 99999999964322 2479999999999998876654 5678999863211111 11110011111000
Q ss_pred HHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHhhh
Q 041698 259 VAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT-IGFGSDASLMSAVITGIVNVVATMV 337 (355)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 337 (355)
.....++.++.++.+..+.++ ++...++.++.....+.+.+|.|.++++ .|++..++..+.++..++++++.++
T Consensus 254 ----~~~~~~~~~~~~~~~a~~dp~-vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ 328 (495)
T KOG2533|consen 254 ----SGGIENKFKWKGFKEALKDPG-VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLIL 328 (495)
T ss_pred ----CCCcccccCHHHHHHHHhchh-HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHH
Confidence 000001123333333333333 5555666667777788899999999987 6699999999999999999999999
Q ss_pred hhheeccc
Q 041698 338 SIYGVDKW 345 (355)
Q Consensus 338 ~g~l~d~~ 345 (355)
+|.++||.
T Consensus 329 ag~lsdr~ 336 (495)
T KOG2533|consen 329 AGYLSDRL 336 (495)
T ss_pred HHHHHHHH
Confidence 99999994
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=211.34 Aligned_cols=248 Identities=15% Similarity=0.118 Sum_probs=173.9
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
++|+|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|++.|++.+...
T Consensus 63 ~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~ 142 (476)
T PLN00028 63 RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV 142 (476)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH
Confidence 33449999999999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc----C--CCccchHHHHhhhHHHHHHHHHHhcccc-C
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK----I--HGGWGWRLSLGGAMVPALIITVGSMILP-D 224 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~----~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~-e 224 (355)
....++.|++|+++|++++++.....++|..+++.+...+.. . .+..+||+.|++.+++.++..+..++++ +
T Consensus 143 -~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 143 -SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred -HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 456688999999999999999987777777777665544321 1 0124899999998888776655554444 3
Q ss_pred ChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHh
Q 041698 225 TPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMF 304 (355)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (355)
.|+. +.++. ++ +.+. ++......+++.++.+. .+..... ++...........
T Consensus 222 ~p~~-----~~~~~----~~---~~~~------------~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~ 273 (476)
T PLN00028 222 LPDG-----NYREL----KK---SGTM------------PKDSFSKVLRYGVTNYR---TWILALT-YGYSFGVELTMDN 273 (476)
T ss_pred CCCC-----chhhH----Hh---cCcc------------ccccHHHHHHHHHcCch---hHHHHHH-HHHHHHHHHHHHh
Confidence 3321 00000 00 0000 00000011223333222 2222222 2222222223444
Q ss_pred cHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCc
Q 041698 305 YAPVLF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 305 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 348 (355)
+.|.++ ++.|++...++....+..++.++++++.|+++||++||
T Consensus 274 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 274 IIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 556555 55799999999999999999999999999999999876
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=205.42 Aligned_cols=277 Identities=13% Similarity=0.068 Sum_probs=204.7
Q ss_pred ChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHh
Q 041698 20 TPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLV 99 (355)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~ 99 (355)
+++.+...+...+..+...++...+.+. +|.+.+++ |+|..+.++..+.+.+++.+++++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~------------------~~s~~~~~~~~~~~~~~~~~~~~~ 67 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPG--MLAVVEDF------------------NAGAEWVPTSMTAYLAGGMFLQWL 67 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcc--hHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666777767766666655 56666665 899999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHH
Q 041698 100 ASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSIT 179 (355)
Q Consensus 100 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 179 (355)
.|+++||+|||+++.++.++.+++.+.+.++++++.+++.|+++|++.+...+....++.|.+|+++|.+..++......
T Consensus 68 ~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 147 (406)
T PRK15402 68 LGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVAL 147 (406)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888889999999999999999999988888
Q ss_pred HHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHH
Q 041698 180 VGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDL 258 (355)
Q Consensus 180 ~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (355)
+|..++|.+++.+.+ ..+||+.|++.++..++..+.. +..||+++... +..+ .++
T Consensus 148 ~~~~~g~~i~~~l~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----------------~~~- 203 (406)
T PRK15402 148 LAPLLGPLVGAALIH---VLPWRGMFVLFAALAALSFFGLWRAMPETAGRVG---EKLS-----------------LKE- 203 (406)
T ss_pred HHHHHHHHHHHHHHH---ccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccc---cccc-----------------HHH-
Confidence 999999999998877 5689999998877766655433 44676643100 0000 000
Q ss_pred HHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhh
Q 041698 259 VAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMSAVITGIVNVVATMV 337 (355)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 337 (355)
..++++..++++.. +.......+.. ........+.|.++ +++|+++.+.+.......++.+++.++
T Consensus 204 ---------~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~ 270 (406)
T PRK15402 204 ---------LGRDYKLVLKNRRF---VAGALALGLVS-LPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLT 270 (406)
T ss_pred ---------HHHHHHHHHcCcHH---HHHHHHHHHHH-HHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 01112333333322 22222111111 11122333455554 558999888888888888889999999
Q ss_pred hhheecccCCcccccc
Q 041698 338 SIYGVDKWGRRFLFLE 353 (355)
Q Consensus 338 ~g~l~d~~g~r~~~~~ 353 (355)
.+++.||+++|+.+.+
T Consensus 271 ~g~l~~r~~~~~~~~~ 286 (406)
T PRK15402 271 LARLTSRRPLRSLIRM 286 (406)
T ss_pred HHHHHHhcCHHHHHHH
Confidence 9999999999887643
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-26 Score=204.08 Aligned_cols=264 Identities=13% Similarity=0.121 Sum_probs=192.8
Q ss_pred HHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 041698 28 IVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQF 107 (355)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~ 107 (355)
....+..+....+...+.+. +|.+.+++ |.+..+.++..+++.+++.+++++.|+++||+
T Consensus 19 ~~~~~~~~~~~~~~~~~~p~--l~~i~~~~------------------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~ 78 (413)
T PRK15403 19 MALILYDFAAYLTTDLIQPG--IINVVRDF------------------NADVSLAPASVSLYLAGGMALQWLLGPLSDRI 78 (413)
T ss_pred HHHHHHHHHHHHHHHhhccC--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc
Confidence 33344445555555555555 55555555 88999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHH
Q 041698 108 GRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANV 187 (355)
Q Consensus 108 Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 187 (355)
|||++++.+.+++++++++++++++++.++++|+++|++.+...+....++.|++|+++|++.+++...+..+|..++|.
T Consensus 79 Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 158 (413)
T PRK15403 79 GRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPL 158 (413)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988767777788999999999999999999999999999999
Q ss_pred HHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhh
Q 041698 188 LNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASR 266 (355)
Q Consensus 188 i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (355)
+++.+.+ ..+||+.|++.+++.++..+. .+.+||+++. +++..+ . +
T Consensus 159 lg~~l~~---~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~--------------~-------------~ 205 (413)
T PRK15403 159 SGAALMH---FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPFS--------------A-------------K 205 (413)
T ss_pred HHHHHHH---hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCCC--------------h-------------H
Confidence 9998886 568999999988876665544 4457886531 000000 0 0
Q ss_pred ccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecc-
Q 041698 267 QVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDK- 344 (355)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~- 344 (355)
...+.++.+++++ +.+. ..+..+........+..+.|.+.++ .|+++.+.++.......+..++..+.+++.++
T Consensus 206 ~~~~~~~~ll~~~---~~~~-~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~ 281 (413)
T PRK15403 206 SVLRDFRNVFRNR---LFLT-GAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP 281 (413)
T ss_pred HHHHHHHHHHcCH---HHHH-HHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 0011233334332 2222 2222222222333455566766655 68999999998888888888888888776544
Q ss_pred cCCc
Q 041698 345 WGRR 348 (355)
Q Consensus 345 ~g~r 348 (355)
.++|
T Consensus 282 ~~~~ 285 (413)
T PRK15403 282 TEPR 285 (413)
T ss_pred Cchh
Confidence 4444
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=203.76 Aligned_cols=245 Identities=14% Similarity=0.105 Sum_probs=184.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-----AIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~g~~ 150 (355)
+.+..+.+++.+++.++..+++++.|+++||+|||++++.+.++..++.++.++.+ +++.+++.|++.|++.+..
T Consensus 30 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 109 (365)
T TIGR00900 30 TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFF 109 (365)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999999999998888888 9999999999999999999
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc--cCChhH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL--PDTPNS 228 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~e~~~~ 228 (355)
.+...+++.|++|+++|+++.++...+..+|.+++|.+++.+.+ ..+||+.|++.++..++..+..+.+ ||+++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (365)
T TIGR00900 110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA---TLGIKWAIWVDAVGFAISALLIVSVRIPELAAS 186 (365)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Confidence 99999999999999999999999999999999999999999987 5689999988776655544443333 332210
Q ss_pred HHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHH
Q 041698 229 IIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPV 308 (355)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
++.+.. ++. .++.++.++..++++..+......++ ...........+.|+
T Consensus 187 ----~~~~~~-------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 236 (365)
T TIGR00900 187 ----EIQALS-------------NAV----------LRDTREGIKFVLKNPLLRTLLLLALL---FNLVFAPAIVALFPY 236 (365)
T ss_pred ----cccccc-------------hhH----------HHHHHhHHHHHHcCcHHHHHHHHHHH---HHHHHHHHHHHHhHH
Confidence 000000 000 00001123334443332222222121 111111222356677
Q ss_pred HHHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 309 LFNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 309 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+.++ +|.++.+.+.......++.+++.++.+++.||.+||+.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 282 (365)
T TIGR00900 237 VQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTG 282 (365)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 7765 79999999999999999999999999999999999887653
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=207.35 Aligned_cols=252 Identities=16% Similarity=0.187 Sum_probs=182.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|+|..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++.+++++++.+++.|++.|++.+...+...
T Consensus 26 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 105 (379)
T TIGR00881 26 GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCG 105 (379)
T ss_pred CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHH-HHHHHhhcCCCccchHHHHhhhHHHHHHHHH-HhccccCChhHHHhcC
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIAN-VLNYFFNKIHGGWGWRLSLGGAMVPALIITV-GSMILPDTPNSIIERG 233 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~-~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~ 233 (355)
+++.|++|+++|+++.++...+..+|..+++ .++..+.+ ..+||+.|++.+++.++..+ ..++.+|+|+....+.
T Consensus 106 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (379)
T TIGR00881 106 RTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE---LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPP 182 (379)
T ss_pred HHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCc
Confidence 9999999999999999999999999999999 46666655 46899999888777655443 3455677654211111
Q ss_pred ChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-Hh
Q 041698 234 RHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NT 312 (355)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 312 (355)
..++.. ++.+.+ ..+.+++.+..+...+.+++.+. ++...+..+...........+.|.+. +.
T Consensus 183 ~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (379)
T TIGR00881 183 AEEMPN---------EEPDGD---AEKKEEELTKKQIFLQYVLLNKV----LWYISLGYVFVYVVRTGILDWSPLYLTQE 246 (379)
T ss_pred cccCcc---------cccccc---cccccccccchHHHHHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000000 00000000011112233333332 22222222222223334555666665 45
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccC
Q 041698 313 IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWG 346 (355)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 346 (355)
.|+++.+.+.......++.+++.++.+++.||..
T Consensus 247 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 280 (379)
T TIGR00881 247 KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF 280 (379)
T ss_pred hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence 7999999999999999999999999999999863
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-27 Score=205.62 Aligned_cols=249 Identities=24% Similarity=0.420 Sum_probs=186.0
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..++++++.++++|++.|++.+...
T Consensus 24 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 103 (352)
T PF07690_consen 24 AEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFS 103 (352)
T ss_dssp HCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccccc
Confidence 44559999999999999999999999999999999999999999999999997777777888899999999999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~ 230 (355)
+....++.|++|+++|++.+++...+..+|.+++|.+++.+.+ ..+||+.|++.+++.++..++ ..+++++++...
T Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~ 180 (352)
T PF07690_consen 104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS---YFGWRWAFLISAILSLIAAILFILFLPEPPPPRE 180 (352)
T ss_dssp HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT
T ss_pred ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh---ccccccccccccchhhhhhhhHhhhhhhcccccc
Confidence 9999999999999999999999999999999999999999986 578999999998887776654 344544432111
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhcccc-chhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEH-PWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL 309 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
.+.+.++. ++.++... .++.+++++..+..+.. .+...........+.|.+
T Consensus 181 ~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 232 (352)
T PF07690_consen 181 RESPKESE------------------------SKKPKPLKPGFKSLFKNPVLWILLIA----FFLFFFVFSGFSFFLPLY 232 (352)
T ss_dssp --SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred cccccccc------------------------cccccccccccccccccchhhhhhhh----hhHHHHHHHHhhcccchh
Confidence 11100000 00011111 13334333322211222 222222233466777776
Q ss_pred -HHhcCCC-CcHHHHHHHHHHHHHHHHhhhhhheecccCCcccc
Q 041698 310 -FNTIGFG-SDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLF 351 (355)
Q Consensus 310 -~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 351 (355)
.+++|++ ..+.+.......+..+++.++.+++.||+++|+..
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (352)
T PF07690_consen 233 LQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRL 276 (352)
T ss_dssp CCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 5678888 68888899999999999999999999999986554
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-27 Score=205.23 Aligned_cols=277 Identities=17% Similarity=0.283 Sum_probs=205.4
Q ss_pred HHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhh
Q 041698 23 VLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASR 102 (355)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~ 102 (355)
....+.+.++...++..|...+... .+. .++.+|++++..|++++.+.+.+++.+|+.|+
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv--~~~------------------v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gy 90 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGV--LKE------------------VQTYFNISDSELGLLQTVFIVVFMIASPLFGY 90 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhh--hHH------------------HHHhcCCCchhccchhHHHHHHHHHHHHHHHH
Confidence 3455666777788888888775443 222 25556999999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHH
Q 041698 103 VTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGI 182 (355)
Q Consensus 103 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 182 (355)
++||+.||+++.+|..++.++.+++++++.+|++.++|.+.|+|++...+..+++++|.+|..+|++++++++.+..+|.
T Consensus 91 LadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGs 170 (493)
T KOG1330|consen 91 LADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGS 170 (493)
T ss_pred HHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041698 183 LIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAA 261 (355)
Q Consensus 183 ~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (355)
.+|.+++..+.+.+. .|||.|++.+++.+++.++. ++.+|++|. ..++.. + .
T Consensus 171 glG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~~-------~-------------~ 223 (493)
T KOG1330|consen 171 GLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEVD-------G-------------E 223 (493)
T ss_pred ceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhccCcccc-----cccccc-------c-------------C
Confidence 999999999988654 39999999999988776655 556666531 111100 0 0
Q ss_pred HHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH----HhcCCCCcHHHHHHHHHHHHHHHHhhh
Q 041698 262 SEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF----NTIGFGSDASLMSAVITGIVNVVATMV 337 (355)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~ 337 (355)
.+..+.....++++....+.+ ......+...........+.+|.|.+. +-.|++..+..++..+...++.+|.++
T Consensus 224 ~~~~~~~ts~~kDl~~l~~~~-v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~ 302 (493)
T KOG1330|consen 224 NKMVKPFTSVWKDLKVLAKIK-VFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLF 302 (493)
T ss_pred CcCCCCccchHHHHHHHHccC-ceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhhee
Confidence 000111122233333211101 111111112222222345555555443 335677778788889999999999999
Q ss_pred hhheecccCC
Q 041698 338 SIYGVDKWGR 347 (355)
Q Consensus 338 ~g~l~d~~g~ 347 (355)
+|.++||+.|
T Consensus 303 Ggiisd~~~~ 312 (493)
T KOG1330|consen 303 GGIISDKLSR 312 (493)
T ss_pred hHHHHHHHHH
Confidence 9999999543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=203.98 Aligned_cols=244 Identities=17% Similarity=0.184 Sum_probs=186.8
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
++|+|..+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+.+.++++++.+++.|++.|++.+...+.
T Consensus 20 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 99 (377)
T PRK11102 20 DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVV 99 (377)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 33999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhc
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIER 232 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~ 232 (355)
..+++.|++|+++|++++++...+..+|..++|.+++.+.+ ..+||+.|++.+++.++..+. .+++||+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 173 (377)
T PRK11102 100 INALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV---WFSWHAIFWVLALAAILAAALVFFFIPETLPKE--- 173 (377)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcChHHHHHHHHHHHHHHHHHHHHhCCccCccc---
Confidence 99999999999999999999999999999999999999887 568999999887776665443 45567754210
Q ss_pred CChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHH-HHH
Q 041698 233 GRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPV-LFN 311 (355)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 311 (355)
++ ++ .+..+ ..+++++.++++. .+..... .+...........+.|. +.+
T Consensus 174 ~~-~~-----------~~~~~--------------~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 223 (377)
T PRK11102 174 RR-QP-----------FHLRT--------------TIRNFASLFRHKR---VLGYMLA-SGFSFAGMFSFLTAGPFVYIE 223 (377)
T ss_pred cc-CC-----------CChHH--------------HHHHHHHHHcChH---HHHHHHH-HHHHHHHHHHHHHcCHHHHHH
Confidence 00 00 00000 0011223333322 1222122 22222222333334444 445
Q ss_pred hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 312 TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
..|+++.+.+.......++.+++.++.+++.||+++|+.+..
T Consensus 224 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~ 265 (377)
T PRK11102 224 LNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRF 265 (377)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 689999999999999999999999999999999999987653
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=199.35 Aligned_cols=256 Identities=13% Similarity=0.083 Sum_probs=176.9
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-AIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~ 150 (355)
++++|+|..+.+++.+++.+++.+++++.|+++||+|||+.+.++.++.+++.+++++++ +++.+++.|+++|++.+ .
T Consensus 29 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~ 107 (366)
T TIGR00886 29 KDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-S 107 (366)
T ss_pred HHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-h
Confidence 344499999999999999999999999999999999999999999999999999999999 99999999999999865 4
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCC-------CccchHHHHh-hhHHHHHHH-HHHhcc
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIH-------GGWGWRLSLG-GAMVPALII-TVGSMI 221 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~-------~~~~w~~~~~-~~~~~~~~~-~~~~~~ 221 (355)
.+....++.|++|+++|+++.++.....++|..+++.+++.+.... .+.+||+.|+ ..+++..+. .+...+
T Consensus 108 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 187 (366)
T TIGR00886 108 FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFV 187 (366)
T ss_pred hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 5667889999999999999999999777788777777766554310 1247999984 434443333 333445
Q ss_pred ccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccc
Q 041698 222 LPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINV 301 (355)
Q Consensus 222 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (355)
.+|+|+.. .+.++.. ..+..... +++...+..+.++++.. +.. .+..+........
T Consensus 188 ~~~~~~~~---~~~~~~~-------~~~~~~~~----------~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~ 243 (366)
T TIGR00886 188 GADTPPGK---PATGKLS-------FKGARWSV----------GTGALGDQLKVFRDRHT---WIL-ALLYSVTFGSFLG 243 (366)
T ss_pred cccCCccc---ccchhcc-------cccccccc----------cchhHHHHHHHHhccch---hhH-HHHHHHHHHHHHH
Confidence 56665311 0000000 00000000 00000012233333322 222 2222222223334
Q ss_pred hHhcHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 302 IMFYAPVLFN-TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 302 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
...+.|.+.+ .+|+++.+++.......+..++++++.++++||+++|+.+.
T Consensus 244 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~ 295 (366)
T TIGR00886 244 VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLL 295 (366)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHH
Confidence 5556666664 57999999998899999999999999999999999987543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=199.87 Aligned_cols=239 Identities=17% Similarity=0.221 Sum_probs=181.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.|..+.++..+.+.++..+++++.|+++||+|||+.++.+.++..++.+++.++++++.+++.|+++|++.+...+...
T Consensus 34 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 113 (392)
T PRK10473 34 NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAF 113 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhcCC
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIERGR 234 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~ 234 (355)
.++.|++|+++|+++.++.+....+|..++|.+++.+.+ ..+||+.|++.+++.++..+. .+.+||+++.. .+
T Consensus 114 ~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~---~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~ 187 (392)
T PRK10473 114 AILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML---KFPWQSLFYTMAAMGILVLLLSLFILKETRPAR---AP 187 (392)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc---cC
Confidence 999999999999999999999999999999999988876 468999999887776655444 45567764210 00
Q ss_pred hHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-Hhc
Q 041698 235 HEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTI 313 (355)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 313 (355)
++ ... .+..++.++++..........+.... ......+.|.+. ++.
T Consensus 188 -~~--------------~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 234 (392)
T PRK10473 188 -AA--------------SSK--------------PRENSESLLNRFFLSRLVITTLSVTV----ILTFVNTSPVLLMEQM 234 (392)
T ss_pred -Cc--------------cch--------------HHHHHHHHhCHHHHHHHHHHHHHHHH----HHHHHHhCHHHHHHHc
Confidence 00 000 00011122222111111111111111 112333445444 567
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 314 GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 314 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
|+++.+.+.......++.+++.++.+++.||++||+.+..
T Consensus 235 g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~ 274 (392)
T PRK10473 235 GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLT 274 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9998888989999999999999999999999999987654
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-25 Score=203.18 Aligned_cols=294 Identities=16% Similarity=0.224 Sum_probs=206.1
Q ss_pred HhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhch
Q 041698 30 AAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGR 109 (355)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr 109 (355)
.+++.+...++....++. +|.+.+++ |.+..+.+++.+.+.++..++.+++|+++||+||
T Consensus 15 ~~~~~~~~~~~~~~~~~~--~p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 74 (471)
T PRK10504 15 VAFGFFMQSLDTTIVNTA--LPSMAQSL------------------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGV 74 (471)
T ss_pred HHHHHHHHHHhHHHHHHH--HHHHHHHh------------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 344556666766666554 67776665 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 041698 110 KLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLN 189 (355)
Q Consensus 110 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 189 (355)
|++++.+.++.+++.+++.++++++.++++|+++|++.+...+....++.|++|+++|+++.++.....++|..++|.++
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 75 RNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhcCChHHHHHHHH---------HHhCCCc--cHH-HHH
Q 041698 190 YFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIERGRHEEAREELR---------KVRGVND--VEE-EFN 256 (355)
Q Consensus 190 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~-~~~ 256 (355)
+.+.+ +.+||+.|++......+..+.. ...|+++. .+.+.+....... ...+.+. ... ...
T Consensus 155 g~l~~---~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (471)
T PRK10504 155 GLLVE---YASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIA 228 (471)
T ss_pred HHHHh---hccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHH
Confidence 99987 5689999998776655544443 33454332 1112221110000 0001000 000 000
Q ss_pred H--------H---HHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCCCcHHHHHH
Q 041698 257 D--------L---VAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFGSDASLMSA 324 (355)
Q Consensus 257 ~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ 324 (355)
. . ..+++..+++..+. ++++++.. .. .....++..........+.|++++ ..|.++.++++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~---~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 303 (471)
T PRK10504 229 GLVAVGVVALLLYLLHARNNNRALFSL-KLFRTRTF---SL-GLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMM 303 (471)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccch---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 0 0 00011111111111 23333322 22 222222222234455667788876 4899999999999
Q ss_pred HHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 325 VITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 325 ~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
.+..++.+++.++.+++.||+++|+++..+
T Consensus 304 ~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~ 333 (471)
T PRK10504 304 IPMVLGSMGMKRIVVQVVNRFGYRRVLVAT 333 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 888898999999999999999999887643
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-25 Score=196.89 Aligned_cols=258 Identities=15% Similarity=0.169 Sum_probs=186.8
Q ss_pred HhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhch
Q 041698 30 AAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGR 109 (355)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr 109 (355)
...+.++.+.+.+..++. +|.+.+++ |.|..+.|++.+.+.+++.+++++.|+++||+||
T Consensus 11 ~~~~~~~~~~~~~~~~~~--lp~~~~~~------------------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~ 70 (381)
T PRK03633 11 LLCGLLLLTLAIAVLNTL--VPLWLAQE------------------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGF 70 (381)
T ss_pred HHHHHHHHHHhhhhHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334556666766666655 67776665 8899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 041698 110 KLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLN 189 (355)
Q Consensus 110 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 189 (355)
|+++..+.++.+++.+++++++|++.++++|+++|++.+...+.....+.+..++++|+++++.+..+.++|..++|.++
T Consensus 71 k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 150 (381)
T PRK03633 71 NRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV 150 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988888888888899999999999999999999999999999
Q ss_pred HHhhcCCCccchHHHHhhhHHHHHHHH-HHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhcc
Q 041698 190 YFFNKIHGGWGWRLSLGGAMVPALIIT-VGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQV 268 (355)
Q Consensus 190 ~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (355)
+.+.+. ..|... +..+....... +.....+|++. + +++
T Consensus 151 ~~l~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~-------------------------------~~~ 189 (381)
T PRK03633 151 SKVSTE---LMSVLP-WVTGLVLAAILPLLFTRILNQQA------E-------------------------------NHD 189 (381)
T ss_pred hccccc---ccchHH-HHHHHHHHHHHHHHHhcccCCCC------C-------------------------------CCC
Confidence 988652 112222 22222211111 11111222110 0 000
Q ss_pred ccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCc
Q 041698 269 EHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 348 (355)
+.+..+.++++..+......+. ..........+.|.+.++.|.++...+.......++.+++++..+++.||+++|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 265 (381)
T PRK03633 190 STSIWPMLKLRQARLGVNGCII----SGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL 265 (381)
T ss_pred CCCHHHHHHhcchHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH
Confidence 1122233333222211111111 111223344567888888899988889989999999999999999999999999
Q ss_pred cccc
Q 041698 349 FLFL 352 (355)
Q Consensus 349 ~~~~ 352 (355)
+.+.
T Consensus 266 ~~l~ 269 (381)
T PRK03633 266 LVLR 269 (381)
T ss_pred HHHH
Confidence 8764
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-25 Score=202.88 Aligned_cols=267 Identities=20% Similarity=0.285 Sum_probs=199.1
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
.++.+.....+..+++++|.++|++++|+++||+|||++++++.++.+++.++.++++|++.+++.|+++|++.++....
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcC
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERG 233 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 233 (355)
...++.|+.++++|+.+..+ ......+..+++..++++.. +||+.+++..+++++.++..++.||+|||+..++
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g 265 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG 265 (521)
T ss_pred hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence 99999999999999999999 77777777778888887765 7999999999998887777666789999999999
Q ss_pred ChHHHHHHHHHHhCCC----ccHHHHHHHH--HHHHH-hhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcH
Q 041698 234 RHEEAREELRKVRGVN----DVEEEFNDLV--AASEA-SRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYA 306 (355)
Q Consensus 234 ~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
+.+++.+.+++..+.+ +.++..+... +..+. ..+++..+.++++.+..++..+...+.++.. ....+-.
T Consensus 266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~----~~~y~gl 341 (521)
T KOG0255|consen 266 RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVF----SLVYYGL 341 (521)
T ss_pred chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHH----hHHHHhh
Confidence 9999999888875433 2222222211 11111 1122345677776653333233333322211 1111112
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 307 PVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 307 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+.... +++.. ........+.....+....+...|+.|||..+..
T Consensus 342 ~~~~~--~lg~~-~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~ 385 (521)
T KOG0255|consen 342 SLNVS--GLGGN-IYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFL 385 (521)
T ss_pred hhhhh--hcCch-HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHH
Confidence 22222 23322 3455555666888888888899999999887653
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=200.88 Aligned_cols=272 Identities=10% Similarity=0.095 Sum_probs=186.2
Q ss_pred HHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 041698 28 IVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQF 107 (355)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~ 107 (355)
....+..+..+++....+.. +|.+.+ ++|+|..+.+++.+.+.+++.+++++.|+++||+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~--~p~i~~------------------~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~ 88 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDIL--LPQFQQ------------------AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL 88 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHH------------------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444456666655444433 455444 4499999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHH
Q 041698 108 GRKLSMFFGGILFLAGALLN---GFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILI 184 (355)
Q Consensus 108 Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~ 184 (355)
|||+++..+.++.+++++++ .++++++.++++|+++|++.+...+....++.|+.++++|.+.++..+....+|..+
T Consensus 89 G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~ 168 (438)
T PRK10133 89 SYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII 168 (438)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 467899999999999999999999999999999877777777899999999999999
Q ss_pred HHHHHHHhhcCC-C----------------c------cchHHHHhhhHHH-HHHHHHH-hccccCChhHHHhcCChHHHH
Q 041698 185 ANVLNYFFNKIH-G----------------G------WGWRLSLGGAMVP-ALIITVG-SMILPDTPNSIIERGRHEEAR 239 (355)
Q Consensus 185 ~~~i~~~~~~~~-~----------------~------~~w~~~~~~~~~~-~~~~~~~-~~~~~e~~~~~~~~~~~~~~~ 239 (355)
++.++..+.... + . .+||++|+....+ .++..+. ...+||.+.. +.+ ++
T Consensus 169 g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~~~-~~-- 242 (438)
T PRK10133 169 AVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS-DA-- 242 (438)
T ss_pred HHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---ccc-cc--
Confidence 999887654100 0 0 2566667543333 2222222 2334543210 000 00
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHH-HH-hcCCCC
Q 041698 240 EELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL-FN-TIGFGS 317 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~~ 317 (355)
+..+..++.+++++.+..+...+..++ ..........|.+.+ .+ .+|+++
T Consensus 243 ------------------------~~~~~~~~~~~ll~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~~~g~s~ 294 (438)
T PRK10133 243 ------------------------KQGSFSASLSRLARIRHWRWAVLAQFC----YVGAQTACWSYLIRYAVEEIPGMTA 294 (438)
T ss_pred ------------------------cccchhhhHHHHHhCchHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhcCCCCH
Confidence 000001122334443332222222212 112222233344544 44 479999
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 318 DASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.+++.......++.++++++++++.||+++|+++..
T Consensus 295 ~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~ 330 (438)
T PRK10133 295 GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAA 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 999999999999999999999999999999987643
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-26 Score=195.37 Aligned_cols=321 Identities=21% Similarity=0.271 Sum_probs=224.5
Q ss_pred CCCCChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHH
Q 041698 16 PGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALL 95 (355)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~ 95 (355)
.....|+....+.++.++.+.|+||..+++.+ .|.+..-+- ... ...=|++....+.+..+.++|.++
T Consensus 32 ~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lV--t~il~~lY~----~~~------~~~g~~ps~i~~~Vn~~A~vGti~ 99 (538)
T KOG0252|consen 32 SEGLQWKHFKAIIIAGMGFFTDSYDLFSISLV--TKILGYLYY----HGD------ESGGHYPSGVLALVNAAALVGTIF 99 (538)
T ss_pred ccchhHHHHHHHHHhhhhhcccchhhhhHHHH--HHHHHHHhc----CCC------CCCCcCCchHHHHHHHHHHHHHHH
Confidence 33457888899999999999999999999877 444443331 111 111257888899999999999999
Q ss_pred HHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCccc
Q 041698 96 SSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-------AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRG 168 (355)
Q Consensus 96 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~ 168 (355)
|+++.|+++|++|||+++...+++.+++++++++.. -.+++...|++.|+|.|+-+|...+..+|...++.||
T Consensus 100 GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RG 179 (538)
T KOG0252|consen 100 GQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRG 179 (538)
T ss_pred HHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcccc
Confidence 999999999999999999999999999999877642 2578999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhh----cCCC--------ccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCCh-
Q 041698 169 ALNIGFQLSITVGILIANVLNYFFN----KIHG--------GWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRH- 235 (355)
Q Consensus 169 ~~~~~~~~~~~~G~~~~~~i~~~~~----~~~~--------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~- 235 (355)
...+...+..+.|.+.|.+++..+. ...+ ..-||..+-+.++++++.+...+.+||++++.....+.
T Consensus 180 a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~ 259 (538)
T KOG0252|consen 180 AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKL 259 (538)
T ss_pred ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCH
Confidence 9888877777777666666555443 2111 13599999999999998888888999999987433322
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccc---hhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh
Q 041698 236 EEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHP---WKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT 312 (355)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (355)
+.+. ++..+....+.+.+ ...+...+..+.+ +...+..+ .-+.++..+..++..-...+....+...+++.
T Consensus 260 ~~a~---~d~~k~~~~~~~~~--~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ 333 (538)
T KOG0252|consen 260 KQAA---GDMKKVLSVDIEAE--STAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA 333 (538)
T ss_pred hhhh---hccccccccccchh--hccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHh
Confidence 2222 22211111110000 0001111111112 22222222 22456777777888777788888888888888
Q ss_pred cCCCCcHHHH---------HHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 313 IGFGSDASLM---------SAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 313 ~g~~~~~~~~---------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
.|+.+.+... ...+.....++|..+...++|++||++..+.|
T Consensus 334 ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~G 384 (538)
T KOG0252|consen 334 IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMG 384 (538)
T ss_pred hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhh
Confidence 7776544322 22233334455777888899999999987654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=193.57 Aligned_cols=232 Identities=16% Similarity=0.182 Sum_probs=164.8
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHhhh
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF--------AQAIWMLIVGRLLLGF 145 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~G~ 145 (355)
|+|+|..+.+++.+++.+++.+++++.|+++||+|||++++.+.+...++.+.... .++++.++++|+++|+
T Consensus 45 ~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 124 (392)
T PRK12382 45 DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGF 124 (392)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999998887776543321 3688999999999999
Q ss_pred cccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCC
Q 041698 146 GIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDT 225 (355)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (355)
+.+...+...+++.|+.|+++|++++++...+...|..++|++++.+.+ ..+|++.+.+..+..++........||.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (392)
T PRK12382 125 GESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS---HFGFAALALTTMVLPLLAWAFNGTVRKV 201 (392)
T ss_pred HHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh---ccChHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9998888888999999999999999999999999999999999998877 5689987776554433332222223332
Q ss_pred hhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhc
Q 041698 226 PNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFY 305 (355)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
+.. + ++ +.+.++..+....+. ... ++. .........+
T Consensus 202 ~~~-----~-~~-------------------------------~~~~~~~~~~~~~~~-~~~-~l~----~~~~~~~~~~ 238 (392)
T PRK12382 202 PAH-----A-GE-------------------------------RPSLWSVVGLIWKPG-LGL-ALQ----GVGFAVIGTF 238 (392)
T ss_pred CCC-----c-cc-------------------------------CchHHHHHHHHHHhH-HHH-HHH----HHHHhHHHHH
Confidence 210 0 00 000111111111111 111 111 1112234455
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 306 APVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.+.++++.+++. .+.......++.+++.++.+++.||+++|+.+..
T Consensus 239 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~ 284 (392)
T PRK12382 239 VSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIV 284 (392)
T ss_pred HHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHH
Confidence 666666666653 4556666778889999999999999999887654
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-25 Score=201.49 Aligned_cols=250 Identities=16% Similarity=0.111 Sum_probs=175.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ----AIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~ 151 (355)
|+|..+.+++.+++.+++.+++++.|+++||+|||++++++.++.+++.+++++++ +++.+++.|++.|++.+...
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence 88999999999999999999999999999999999999999999999998888763 78889999999999999888
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHH-HHHHHHHHhhcCCCccchHHHHhhhHHHHHHHH-HHhccccCChhHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGIL-IANVLNYFFNKIHGGWGWRLSLGGAMVPALIIT-VGSMILPDTPNSI 229 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~e~~~~~ 229 (355)
+.....+.|++|+++|+++++++..+.++|.. .+|+++..+.. ..+||+.|++.+++.++.. +..+++||+|+..
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~---~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~ 215 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW---FNDWHAALYMPAFAAILVALFAFAMMRDTPQSC 215 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhc
Confidence 88888999999999999999999999999864 45554433332 2389999998877766543 4456678887532
Q ss_pred HhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhc--cCchhHHHHHHHHHHHHHcccccchHhcHH
Q 041698 230 IERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQ--KKYRPHLTMAVLIPFFQQFTGINVIMFYAP 307 (355)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
..+ +.++..+ +..+ ..+.++.++.+.++.++ ..+.+. ++...+..+......+....+.|
T Consensus 216 ~~~-~~~~~~~---~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~P 277 (452)
T PRK11273 216 GLP-PIEEYKN---DYPD-------------DYNEKHEQELTAKQIFMQYVLPNKL-LWYIAIANVFVYLLRYGILDWSP 277 (452)
T ss_pred CCC-Chhhhhh---cccc-------------ccccccCCCccHHHHHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111000 0000 00000001111222111 011122 22222222222233345566778
Q ss_pred HHHHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccC
Q 041698 308 VLFNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWG 346 (355)
Q Consensus 308 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 346 (355)
.++++ .|++..+++....+..++.+++.++.|+++||++
T Consensus 278 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~ 317 (452)
T PRK11273 278 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF 317 (452)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77765 7899888888888889999999999999999983
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-25 Score=196.85 Aligned_cols=232 Identities=20% Similarity=0.218 Sum_probs=168.0
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHhhh
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA--------QAIWMLIVGRLLLGF 145 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~ 145 (355)
++|.|..+.+++.+++.+++.+++++.|+++||+|||++++.+.++.+++.+.+.++ .+++.+++.|+++|+
T Consensus 45 ~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 124 (399)
T PRK05122 45 QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGI 124 (399)
T ss_pred hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHh
Confidence 348999999999999999999999999999999999999999999988877665543 257789999999999
Q ss_pred cccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCC
Q 041698 146 GIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDT 225 (355)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (355)
+.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+ ..+|++.+++.++..++..+.....|++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (399)
T PRK05122 125 GESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH---WGGLAGLGLLIMLLALLGLLLARPRPAV 201 (399)
T ss_pred hHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999887 5789998887666554433333223332
Q ss_pred hhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhc
Q 041698 226 PNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFY 305 (355)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
++. + ++ +.++++.++... .......+.. ........+
T Consensus 202 ~~~-----~-~~-------------------------------~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~ 238 (399)
T PRK05122 202 PPV-----K-GE-------------------------------RLPFRRVLGRVW--PYGMGLALAS----IGFGTIATF 238 (399)
T ss_pred CCC-----C-cc-------------------------------chhHHHHHHHHH--HHHHHHHHHH----HHHHHHHHH
Confidence 210 0 00 000111111110 0011111111 112233445
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 306 APVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.+.+..+.|++ +.+.......++.+++.++.+++.||+++|+.+..
T Consensus 239 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 284 (399)
T PRK05122 239 ITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIV 284 (399)
T ss_pred HHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 56566666663 34566677888899999999999999999887643
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-25 Score=183.44 Aligned_cols=276 Identities=20% Similarity=0.246 Sum_probs=212.9
Q ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 71 TNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 71 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
.++.++.+..+..++....+.|..+++..+|.++|++|||+.+.+..+..++...+.+.++|+..+++.|.+.|+|.|+
T Consensus 104 l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg- 182 (528)
T KOG0253|consen 104 LDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG- 182 (528)
T ss_pred HHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-
Confidence 4666688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSII 230 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 230 (355)
.|...++-.|..|..+|...+-.. ..+.+|.++...++..... +.||||.......+..+.....+++||+||+..
T Consensus 183 ~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~---~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~ 258 (528)
T KOG0253|consen 183 LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS---NFGWRYLLFTSSTPLMFAARFLVWVYESPRFYL 258 (528)
T ss_pred ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHhHHHHHHHHHhhcccCcchhh
Confidence 888899999999999999888777 8999999999999988877 578999988888777777778889999999999
Q ss_pred hcCChHHHHHHHHHHhCCCcc---------------HHHHHHHHHHH-HHhhccccchhhhhccCchhHHHHHHHHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDV---------------EEEFNDLVAAS-EASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQ 294 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (355)
.+++++++...++++...|.. |++..+..+.+ +..++.+....+++....+++.+.....++..
T Consensus 259 ~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgn 338 (528)
T KOG0253|consen 259 AKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGN 338 (528)
T ss_pred hcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhh
Confidence 999999999988888765521 11111111111 11122234456666666666666666665544
Q ss_pred HcccccchHhcHHHHHHhc--------------------CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 295 QFTGINVIMFYAPVLFNTI--------------------GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
.+..+..+. ..+.+.+.. ..+......-..+..+..++|.++.+++.||+|||+.+.
T Consensus 339 afsyyg~VL-lttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMa 415 (528)
T KOG0253|consen 339 AFSYYGSVL-LTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMA 415 (528)
T ss_pred HHHHHHHHH-HHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHH
Confidence 444333332 222222211 112223345567788999999999999999999999864
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=194.68 Aligned_cols=244 Identities=23% Similarity=0.339 Sum_probs=176.6
Q ss_pred CCcchhHHHHHH-----HHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHh
Q 041698 77 YDSETLTMFTSS-----LYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIW--------MLIVGRLLL 143 (355)
Q Consensus 77 ~s~~~~~~~~s~-----~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~ 143 (355)
.++.+.+.+.+. .+++..+++++.|+++||+|||+++..+.++..++.++++++++++ .+++.|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 344555554443 3344457899999999999999999999999999999999988875 588999999
Q ss_pred hhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCC-----CccchHHHHhhhHHHHHHHHHH
Q 041698 144 GFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIH-----GGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 144 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
|++.+...+....++.|++|+++|++..+....+..+|.++++.++..+.... ..++||+.|++.+++.++....
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877654210 1468999998877666655544
Q ss_pred hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHccc
Q 041698 219 SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTG 298 (355)
Q Consensus 219 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
....||++++...++ ++++.+.+.++.++++. ++.+... ...+.....
T Consensus 187 ~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 234 (394)
T TIGR00883 187 RRNLEETPVFEKAQE------------------------------KHKKKRGPIRETLTKHR-KPFLLGL-GLVIATTTT 234 (394)
T ss_pred HHhcCCChhHHHHHh------------------------------ccccccCCHHHHHHhch-HHHHHHH-HHHHHHHHH
Confidence 455677654211100 00111223333443322 1122222 222333333
Q ss_pred ccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 299 INVIMFYAPVLF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 299 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
......+.|.+. ++.|.++.+.+.......+..+++.++.++++||++||+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 289 (394)
T TIGR00883 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI 289 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 444556667666 568899999999999999999999999999999999998654
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-25 Score=209.41 Aligned_cols=266 Identities=14% Similarity=0.159 Sum_probs=187.0
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--------------------
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-------------------- 131 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------------- 131 (355)
+++++++..+.|++.+.+.++++++.++.++++||+|||+++.++.++.+++++++++.+
T Consensus 60 ek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 60 ERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred hhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 445599999999999999999999999999999999999999999999999999988764
Q ss_pred -------------------------------HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHH
Q 041698 132 -------------------------------AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITV 180 (355)
Q Consensus 132 -------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 180 (355)
.+..++++|+++|+|.+..++...+++.|++|+++|++.++++..+..+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 2567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcc-------------------chHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHH
Q 041698 181 GILIANVLNYFFNKIHGGW-------------------GWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREE 241 (355)
Q Consensus 181 G~~~~~~i~~~~~~~~~~~-------------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 241 (355)
|.++|+++++++.+...++ .|+..|++.+++.++..+.++++|++.+....+.+.++.++
T Consensus 220 G~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~- 298 (633)
T TIGR00805 220 GPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHET- 298 (633)
T ss_pred hhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhh-
Confidence 9999999999987532111 27777888887777665555666654311000000000000
Q ss_pred HHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCCCcHH
Q 041698 242 LRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFGSDAS 320 (355)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~ 320 (355)
+.... .+.+.. . ...+..+......+.+++.+ .++...+..+........+..+.|.+++ ++|+++.++
T Consensus 299 -~~~~~-~~~~~~-~---~~~~~~~~~~~~~~~Ll~n~----~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~a 368 (633)
T TIGR00805 299 -EKLEK-SEDKSR-K---KNSDITKDFPKIIKRLLCNP----IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEA 368 (633)
T ss_pred -hcccc-cccccc-h---hhhhhHHHHHHHHHHHHcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 00000 000000 0 00000000011233344332 2333434444444455666777887775 589999999
Q ss_pred HHHHHHHHH-HHHHHhhhhhheecccCCc
Q 041698 321 LMSAVITGI-VNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 321 ~~~~~~~~~-~~~~~~~~~g~l~d~~g~r 348 (355)
+.+.....+ +.+++.+++|+++||++.+
T Consensus 369 g~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 369 NFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 998887776 5789999999999999854
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=193.40 Aligned_cols=241 Identities=14% Similarity=0.101 Sum_probs=172.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH---H-hhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG---F-AQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++. + .++++.+++.|++.|++.+...
T Consensus 44 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~ 123 (402)
T TIGR00897 44 GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFA 123 (402)
T ss_pred CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHH
Confidence 89999999999999999999999999999999999999999999998876553 3 2578899999999999988888
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHH-HHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH-HhccccCChhHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGI-LIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV-GSMILPDTPNSI 229 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~ 229 (355)
+.....+.+++|+++|++++++...+.++|. .++|.+++.+.+ ..+|+..++.......+..+ ..++.++.++..
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (402)
T TIGR00897 124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP---AFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQ 200 (402)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHHHHHHHHHHhccCCCCCcc
Confidence 8888888999999999999999999999996 688999888776 45655444433322222222 223344432100
Q ss_pred HhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHH
Q 041698 230 IERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL 309 (355)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
.+++.++ .++ .++.++.+++++. .+..... .++..........+.|.+
T Consensus 201 -~~~~~~~-----------------~~~----------~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~p~~ 248 (402)
T TIGR00897 201 -HMQTREK-----------------FSE----------LGKAATILFTNPN---VLLGGMV-RIINTIGLFGFAVFLPMF 248 (402)
T ss_pred -cccCCcc-----------------hhh----------HHHHHHHHHcChh---HHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 0000000 000 0011223333322 2222222 223333345566788888
Q ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccc
Q 041698 310 FNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLF 351 (355)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 351 (355)
.+++|+++.+.+.......++.+++.++.|+++||++||+.+
T Consensus 249 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~ 290 (402)
T TIGR00897 249 VAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV 290 (402)
T ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 888999999988888889999999999999999999988754
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=193.95 Aligned_cols=241 Identities=15% Similarity=0.073 Sum_probs=176.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+++.+++.+++.+.++++|+++||+|||++++++.++.+++++++.++.+. ++.|+++|++.+...|+..
T Consensus 34 ~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~ 110 (393)
T PRK11195 34 HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKY 110 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999999999999999998888777664 7889999999999999999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCCh
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRH 235 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 235 (355)
+++.|++|+++|+++.++......+|.++||.+++.+.+ +.|+..+.+.+...++..+..+.+||+|++...++..
T Consensus 111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~----~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 186 (393)
T PRK11195 111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD----PHAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWN 186 (393)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCC
Confidence 999999999999999999999999999999999999987 3477777666555444444456678765321111000
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcC
Q 041698 236 EEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIG 314 (355)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g 314 (355)
.+ +. .++. +..++.+++++..+.......+.+.. .....+..+.+. +.+|
T Consensus 187 ~~--~~-------------~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lg 237 (393)
T PRK11195 187 PI--AL-------------LRDF----------FHACRVLWRDKLGRFSLAGTTLFWGA----GATLRFLVLAWAPVALG 237 (393)
T ss_pred HH--HH-------------HHHH----------HHHHHHHHhCchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcC
Confidence 00 00 0000 00122333333322222222221111 112223333333 4579
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 315 FGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
.++.+.+.......++.+++.++.+++.||.++|+.+.
T Consensus 238 ~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~ 275 (393)
T PRK11195 238 ITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLP 275 (393)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHH
Confidence 99999999999999999999999999999988877554
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=194.28 Aligned_cols=238 Identities=16% Similarity=0.206 Sum_probs=183.7
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccc
Q 041698 73 QYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
+++|.+.++.+++.+++.++..++++++|+++||+|||+++..+.++..++.+++.++++++.+++.|+++|++.+...+
T Consensus 34 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~ 113 (401)
T PRK11043 34 ADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAV 113 (401)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHH
Confidence 34499999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhc
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIER 232 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 232 (355)
....++.|++|++++++..+.......+|..++|.+++.+.+ ..+||+.|++.+++.++..+..++++|+++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 186 (401)
T PRK11043 114 IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN---HFGWQAIFATLFAITLLLILPTLRLKPSKKA---- 186 (401)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHHHHHcCCCCCc----
Confidence 888899999999989999999888899999999999999887 5689999998887776665555555554321
Q ss_pred CChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh
Q 041698 233 GRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT 312 (355)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (355)
++.++ ++.++++.++++..+........ ..........+.|.+.++
T Consensus 187 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~ 232 (401)
T PRK11043 187 RKQSQ------------------------------DALTFKQLLKSKTYLGNVLIFAA----CSAAFFAWLTGSPFILEQ 232 (401)
T ss_pred cccch------------------------------HHHHHHHHHcChhHHHHHHHHHH----HHHHHHHHHHHhHHHHHH
Confidence 00000 01123333333222211111111 111223344567777788
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccc
Q 041698 313 IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLF 351 (355)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 351 (355)
.|+++.+.+.......++.+++.++.+++.||+++|+..
T Consensus 233 ~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~ 271 (401)
T PRK11043 233 MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL 271 (401)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 899999889888888889999999999999999988743
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=192.75 Aligned_cols=240 Identities=16% Similarity=0.205 Sum_probs=173.5
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 73 QYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFF-GGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
+++|.|..+.+++.+++.++..+.+++.|+++||+||||.++. +.++..++.++++++++++.+++.|++.|.+.+...
T Consensus 26 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 105 (375)
T TIGR00899 26 EEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTAN 105 (375)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhH
Confidence 3449999999999999999999999999999999999887654 566666777888899999999999999998888888
Q ss_pred cchhhhhhhcCCCCcccch--hhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhH
Q 041698 152 QSVPLYLSEMAPYRFRGAL--NIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNS 228 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~ 228 (355)
|....+..|+.|+++|++. .+....+.++|..++|.+++.+.+ ..+||+.|++.+++.++..+.. +++||+|++
T Consensus 106 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T TIGR00899 106 PQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL---GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRG 182 (375)
T ss_pred HHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH---hcccHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 8888888998887777654 577888889999999999999887 5689999999888766555443 457887642
Q ss_pred HHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHH
Q 041698 229 IIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPV 308 (355)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
...+. + +.+.++.++++..+......++.+. .......+.|.
T Consensus 183 ~~~~~---~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 224 (375)
T TIGR00899 183 APGAL---T-------------------------------RLEVRGLLASRDTRLLFVACTLMWG----CNILYIINMPL 224 (375)
T ss_pred ccccc---C-------------------------------cchhhhhhcCcchHHHHHHHHHHHH----HHHHHHhhhHH
Confidence 10000 0 0011112222222221222212111 11222334454
Q ss_pred HH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 309 LF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 309 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+. ++.|.++.+.+.......+..+++.++.+++.||++||+.+.+
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~ 270 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLL 270 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHH
Confidence 44 5689999988888887777888899999999999999987653
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=195.94 Aligned_cols=255 Identities=16% Similarity=0.149 Sum_probs=176.7
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHhhhcccccc
Q 041698 73 QYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIV-GRLLLGFGIGFAN 151 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~ 151 (355)
+++|++.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++++++++++++.+++ .|++.|++.+...
T Consensus 47 ~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~ 126 (455)
T TIGR00892 47 QIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNF 126 (455)
T ss_pred HHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhh
Confidence 344999999999999999999999999999999999999999999999999999999999998875 5699999998877
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc-cCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL-PDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~ 230 (355)
+....++.++++ ++|+++.++...+..+|..++|.+++.+.+ ..+||+.|++.+++.++..+..+++ ++.+.+.
T Consensus 127 ~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~---~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~- 201 (455)
T TIGR00892 127 QPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE---SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQR- 201 (455)
T ss_pred hHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH---HhChHHHHHHHHHHHHHHHHHHHHhCCCCcccc-
Confidence 777788899985 789999999999999999999999998887 5689999999888766554443333 3222110
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF 310 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
+.+.++. +.....+..++. .. .....+..+...+ +.++++ . ++......+...........+.+.+.
T Consensus 202 -~~~~~~~----~~~~~~~~~~~~--~~-~~~~~~~~~~~~~-~~~~~~---~-~~~~~~~~~l~~~~~~~~~~~l~~~~ 268 (455)
T TIGR00892 202 -VSKSKSK----EGLPPDGSTKKL--SK-KSTAEKINRFLDF-SLFTHR---G-FLVYLSGNVIMFLGFFAPIIFLVPYA 268 (455)
T ss_pred -ccccccc----ccCCCCCccccc--cc-cchhhhhhhhcch-HHhcCc---h-HHHHHHHHHHHHHHccchHHHHHHHH
Confidence 0000000 000000000000 00 0000000000011 233322 2 22222222222233344455666677
Q ss_pred HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheeccc
Q 041698 311 NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKW 345 (355)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 345 (355)
++.|++..+++...++.+++.++++++.+++.||.
T Consensus 269 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~ 303 (455)
T TIGR00892 269 KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK 303 (455)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77899999999999999999999999999999973
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=194.45 Aligned_cols=267 Identities=12% Similarity=0.128 Sum_probs=189.7
Q ss_pred HHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 041698 29 VAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFG 108 (355)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G 108 (355)
.++...+..|++.+..++. +|.+.+++ |+|..+.+++.+.+.+++.+++++.|++.||+|
T Consensus 7 ~~~~~f~~~G~~~~~~~~l--~~~~~~~~------------------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G 66 (410)
T TIGR00885 7 LITSLFALWGFANDITNPM--VPQFQQAF------------------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLS 66 (410)
T ss_pred HHHHHHHHHHHHHHhHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455567777777666655 55655555 999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHH
Q 041698 109 RKLSMFFGGILFLAGALLNGF---AQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIA 185 (355)
Q Consensus 109 rr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~ 185 (355)
||+++.++.++.+++.+++.. .++++.+++.|++.|++.|..++....++.+..|+++|++.+++.+...++|..++
T Consensus 67 ~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g 146 (410)
T TIGR00885 67 YKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIG 146 (410)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988654 35899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC-----------------------CccchHHHHhhhHHHHHHHHHHhcc--ccCChhHHHhcCChHHHHH
Q 041698 186 NVLNYFFNKIH-----------------------GGWGWRLSLGGAMVPALIITVGSMI--LPDTPNSIIERGRHEEARE 240 (355)
Q Consensus 186 ~~i~~~~~~~~-----------------------~~~~w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~ 240 (355)
|.++..+.... +..+||+.|.+.+++.++..+...+ .||.++ ++ ++
T Consensus 147 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~~--- 217 (410)
T TIGR00885 147 MVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-AK--- 217 (410)
T ss_pred HHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-cc---
Confidence 99988875321 0136999998888776655444332 343211 00 00
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhc--CCCCc
Q 041698 241 ELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTI--GFGSD 318 (355)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~ 318 (355)
+...+++.+++++++.........+++. ........+.+.+.++. +.+..
T Consensus 218 ------------------------~~~~~~~~~~~~~~~~~~~~~l~~f~yv----g~e~~~~s~l~~y~~~~~~~~~~~ 269 (410)
T TIGR00885 218 ------------------------QISFSASLSRLARIRHYREGVIAQFFYV----GVQIMCWTFIIQYAVRLIPGMTAG 269 (410)
T ss_pred ------------------------cccchhhHHHHHhChhHHHHHHHHHHHH----HHHHHHHHHHHHHHhhccCCCCHH
Confidence 0000111223333332222222222222 22223344555555544 33444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 319 ASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
.+............+|+++.+++.||+++|+.+.
T Consensus 270 ~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~ 303 (410)
T TIGR00885 270 FAANYNIGAMVIFFISRFIGTWLISYLAAHKVLM 303 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 4455666667888999999999999999988764
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=195.22 Aligned_cols=254 Identities=19% Similarity=0.157 Sum_probs=179.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA----QAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|+|.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.++. ++++.+.+.|++.|++.+..+
T Consensus 57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~ 136 (438)
T TIGR00712 57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGW 136 (438)
T ss_pred CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcch
Confidence 8899999999999999999999999999999999999999999999998887764 467888899999999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHH-HHhccccCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIIT-VGSMILPDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~ 230 (355)
+.....+.|++|+++|++++++.+.+.++|..+++.+.+..... ..+||..|++.+++.++.. +..+++||+|+...
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~ 214 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW--FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG 214 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC
Confidence 98999999999999999999999999999999998877654331 3589999999888766644 34456788775321
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccch-hhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPW-KNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL 309 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
. ++.++.++ +... +..+ +.+.+.+.+... +..++++. ++...+..++.....+....+.|.+
T Consensus 215 ~-~~~~~~~~---~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~ 277 (438)
T TIGR00712 215 L-PPIEEYRN---DYPD--DYNE-------KAEQELTAKEIFMQYVLPNKL----LWYIAIANVFVYLLRYGVLDWSPTY 277 (438)
T ss_pred C-CCchhccc---cccc--cccc-------ccccccchHHHHHHHHccCch----HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 0 01000000 0000 0000 000000000111 11223222 2222222222222334555677777
Q ss_pred HHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCc
Q 041698 310 FNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 310 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 348 (355)
+++ .|+++.++++...+..+..+++.++.++++||++++
T Consensus 278 l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~ 317 (438)
T TIGR00712 278 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG 317 (438)
T ss_pred HHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 765 799999999999999999999999999999999643
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-24 Score=190.41 Aligned_cols=239 Identities=13% Similarity=0.129 Sum_probs=165.9
Q ss_pred cCCcch-----hHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSET-----LTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~-----~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|++..+ .+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++.+.++++.+++.|++.|++.+ .
T Consensus 45 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~ 123 (408)
T PRK09874 45 GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-F 123 (408)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-h
Confidence 666443 5889999999999999999999999999999999999999999999999999999999999999755 5
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSI 229 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~ 229 (355)
.+....++.|++|+++|+++.++...+..+|..++|.+++.+.+ ..+||+.|++.+++.++..+.. ++++|+++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (408)
T PRK09874 124 VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD---SYGLRPVFFITASVLFLCFLVTLFCIRENFQPV 200 (408)
T ss_pred HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 67777888999999999999999999999999999999999877 5689999998887766554443 4456543210
Q ss_pred HhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHH
Q 041698 230 IERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL 309 (355)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
++.++ .+ . + +..+.++++.. +.......+...........+.+.+
T Consensus 201 ---~~~~~---------------~~------~-------~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (408)
T PRK09874 201 ---SKKEM---------------LH------M-------R-EVVTSLKNPKL---VLSLFVTTLIIQVATGSIAPILTLY 245 (408)
T ss_pred ---cchhh---------------hH------H-------H-HHHHhCcCCch---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00 0 0 00111222211 1111111111111112233344444
Q ss_pred HHhcCCCCc----HHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 310 FNTIGFGSD----ASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 310 ~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
..+.+.+.. ..+......+++.+++.+..+++.||++||+.+..
T Consensus 246 ~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~ 293 (408)
T PRK09874 246 VRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILIT 293 (408)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHH
Confidence 444332222 23455566678888899999999999999987654
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=186.51 Aligned_cols=237 Identities=16% Similarity=0.179 Sum_probs=175.1
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ ..++.+.+++.|++.|++.+...+.
T Consensus 29 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~ 107 (355)
T TIGR00896 29 ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVL 107 (355)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhcc
Confidence 339999999999999999999999999999999999999999999888888777 7789999999999999999988888
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcC
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERG 233 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 233 (355)
...++.|++| ++|+++.++...+.++|..+++.+.+.+.+..+ .+||+.|...++..++.. ..++|+.++.
T Consensus 108 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~~~~~~~~~--~~~~~~~~~~----- 178 (355)
T TIGR00896 108 LPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWWALPALLAL--LAWIPQVRRR----- 178 (355)
T ss_pred chHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHH--HHHhhhhccc-----
Confidence 8888999886 689999999999999999999999888875321 249998876665443322 2233443210
Q ss_pred ChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhc
Q 041698 234 RHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTI 313 (355)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (355)
.++ +++..+...++.++++. .+ ...+..+...........+.|.+.++.
T Consensus 179 -~~~--------------------------~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~lp~~~~~~ 227 (355)
T TIGR00896 179 -VAA--------------------------NQTTTRLTPVRIWRSPL---AW-QVTVFFGLQSGLYYSLIGWLPAILISH 227 (355)
T ss_pred -cCC--------------------------CCCCCCCCCchhhcCHh---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 000 00000112223333322 22 222222222233345566788888888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhhhhheecccC-Ccccc
Q 041698 314 GFGSDASLMSAVITGIVNVVATMVSIYGVDKWG-RRFLF 351 (355)
Q Consensus 314 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~r~~~ 351 (355)
|++..+.+...+...++.++++++.|++.||++ ||+.+
T Consensus 228 g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~ 266 (355)
T TIGR00896 228 GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIV 266 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHH
Confidence 999999999999999999999999999999995 44443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=185.55 Aligned_cols=238 Identities=24% Similarity=0.444 Sum_probs=196.0
Q ss_pred hhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHH
Q 041698 33 GGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLS 112 (355)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~ 112 (355)
..+...++....++. .|.+.+++ |.+..+.+++.+.+.++..+++++.|+++||+|||+.
T Consensus 7 ~~~~~~~~~~~~~~~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~ 66 (352)
T cd06174 7 GFFLSGLDRGLLSPA--LPLLAEDL------------------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRV 66 (352)
T ss_pred HHHHHHHhhhhhHhh--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchh
Confidence 344455555554444 55665554 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHh
Q 041698 113 MFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFF 192 (355)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~ 192 (355)
+.++.++..++.+...+.++++.+++.|++.|++.+...+....++.|++|+++|++.+++......+|..++|.+++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 146 (352)
T cd06174 67 LLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL 146 (352)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccch
Q 041698 193 NKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPW 272 (355)
Q Consensus 193 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (355)
.+ ..+||+.+++.+++.++..+...+++
T Consensus 147 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 174 (352)
T cd06174 147 AE---SLGWRWLFLILAILGLLLALLLLFLL------------------------------------------------- 174 (352)
T ss_pred HH---HhhHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 87 45799999988877666555443332
Q ss_pred hhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcc-c
Q 041698 273 KNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTI-GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRF-L 350 (355)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~-~ 350 (355)
++ ++......+...........+.+.+.++. |.++.+.+.......++.+++.++.+++.||++||+ .
T Consensus 175 ---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 244 (352)
T cd06174 175 ---------RL-LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL 244 (352)
T ss_pred ---------HH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 11 22222333333344556666777777664 899999999999999999999999999999999998 5
Q ss_pred cc
Q 041698 351 FL 352 (355)
Q Consensus 351 ~~ 352 (355)
+.
T Consensus 245 ~~ 246 (352)
T cd06174 245 LL 246 (352)
T ss_pred HH
Confidence 54
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=189.04 Aligned_cols=232 Identities=17% Similarity=0.235 Sum_probs=175.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|+|..+.+++.+++.+++.+++++.|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+...+...
T Consensus 39 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 118 (394)
T PRK11652 39 NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMAR 118 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH-HhccccCChhHHHhcCC
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV-GSMILPDTPNSIIERGR 234 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~ 234 (355)
.+..|.+++++|+++.+....+..+|..++|.+++.+.+ ..+||+.|++.++..++..+ ..+++||+++.. .+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 192 (394)
T PRK11652 119 TLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT---LFGWRACYLFLLLLGAGVTFSMARWMPETRPAD---AR 192 (394)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccChHHHHHHHHHHHHHHHHHHHHhCCccCccc---cc
Confidence 888999998999999999999999999999999999877 56899999987776554433 345567764210 00
Q ss_pred hHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh-c
Q 041698 235 HEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT-I 313 (355)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 313 (355)
.++ .+..+++.++++..+......+. ..........+.+.+.++ +
T Consensus 193 ~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 238 (394)
T PRK11652 193 RTR------------------------------VLASYRTLLSNRRFNCYLLMLIG----TLAGIAVFEACSGVLMGAVL 238 (394)
T ss_pred hhH------------------------------HHHHHHHHHcChHHHHHHHHHHH----HHHHHHHHHHhChHHHHHHc
Confidence 000 01112233333222221211111 111122333334445544 8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCC
Q 041698 314 GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGR 347 (355)
Q Consensus 314 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 347 (355)
|+++.+.+.......++.+++..+.+++.||.++
T Consensus 239 g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 272 (394)
T PRK11652 239 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 272 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888888888899999999999998873
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=177.49 Aligned_cols=239 Identities=20% Similarity=0.232 Sum_probs=187.7
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHhhhccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQA---IWMLIVGRLLLGFGIG 148 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~g 148 (355)
++|+|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++..+-++..+++.+ ++++++++.+.|++ |
T Consensus 41 ~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-G 119 (417)
T COG2223 41 KSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-G 119 (417)
T ss_pred ccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-c
Confidence 5666999999999999999999999999999999999999999999999999999998854 45999999999998 5
Q ss_pred ccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccc---hHHHHhhhHHHHHHHHHHh-ccccC
Q 041698 149 FANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWG---WRLSLGGAMVPALIITVGS-MILPD 224 (355)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~~-~~~~e 224 (355)
..+.....++++|+|++++|.+++++. ..|+|..+...++..+.. ..+ |+....+.....++..+.. +.+.|
T Consensus 120 asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~---~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 120 ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV---AFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 678888999999999999999999999 889999988888888776 345 8888887777766655444 45566
Q ss_pred ChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccc-cchhhhhccCchhHHHHHHHHHHHHHcccccchH
Q 041698 225 TPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVE-HPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIM 303 (355)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (355)
.|......+ +.+ .+.+.+++.++ .+.+.+..+..+..+..+.
T Consensus 196 ~p~~r~~~~---------------------------------~~~~~~~~~v~~~~~----~W~lsllY~~tFG~Fvgfs 238 (417)
T COG2223 196 VPEHRASVK---------------------------------PQLPAQLKAVFSNKD----TWLLSLLYFATFGGFVGFS 238 (417)
T ss_pred Chhhhcccc---------------------------------ccchhHHHHHhcCcc----hHHHHHHHHHHHHHHHHHH
Confidence 553210000 001 22333333332 2333333444455566777
Q ss_pred hcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 304 FYAPVLF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 304 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
.+.|.++ +++|.++..++.......+.+.+.+.++|+++||+|.++.+.
T Consensus 239 ~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~ 288 (417)
T COG2223 239 AYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTL 288 (417)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHH
Confidence 7777666 569999999999999999999999999999999999887654
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-23 Score=184.68 Aligned_cols=239 Identities=10% Similarity=0.029 Sum_probs=171.7
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
++|+|..+++++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++.+++++++.++++|++.|.+.+...+.
T Consensus 37 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 116 (395)
T PRK10054 37 QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTV 116 (395)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999887878888
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhc
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIER 232 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~ 232 (355)
...+..|..|+++|++..++.....++|..++|.+++.+.+ .+|+..|++.++..++..+.. +++||+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~---- 188 (395)
T PRK10054 117 LKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLPFWLAAICSAFPLVFIQIWVQRSEKA---- 188 (395)
T ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcHHHHHHHHHHHHHHHHHHHHhccccc----
Confidence 89999999999999999999999999999999999998874 479999998777766554433 445554311
Q ss_pred CChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH--
Q 041698 233 GRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-- 310 (355)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 310 (355)
++.++ ++ ..+.++.++++..+......++..+. ......+.+.+.
T Consensus 189 ~~~~~-------------------------~~----~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~ 235 (395)
T PRK10054 189 IATET-------------------------GS----VWSPSVLLQDKALLWFTCSGFLASFV----SGAFASCISQYVMV 235 (395)
T ss_pred cccch-------------------------hh----hhhhhhhccCceehHHHHHHHHHHHH----HHHhhhhHHHHHHH
Confidence 00000 00 00012233333222222221111111 111222223332
Q ss_pred -HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 311 -NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 311 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
++.+.+....+.......+.........+++.||.++|+.+..
T Consensus 236 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 279 (395)
T PRK10054 236 VADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTA 279 (395)
T ss_pred hcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHH
Confidence 2345555566777777777777778888999999998887643
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-23 Score=186.99 Aligned_cols=241 Identities=13% Similarity=0.208 Sum_probs=171.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-----chhHH-HHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF-----GRKLS-MFFGGILFLAGALLNGFA---QAIWMLIVGRLLLGFG 146 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~ 146 (355)
|.|..+++.+ +.....+ ++.+++|+++||+ |||+. ++.+.+..+++..+.++. ++++.+.+.+++.|++
T Consensus 43 g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~ 120 (491)
T PRK11010 43 NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFC 120 (491)
T ss_pred CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 8888899987 4444444 6899999999999 99885 667777777777777775 5788999999999999
Q ss_pred ccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCCh
Q 041698 147 IGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTP 226 (355)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~ 226 (355)
.+...+...++..|++|+++|+++.++...+..+|.++++.++..+.+. ..|||..|++.++..++..+..+++||++
T Consensus 121 ~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--~~GWr~~f~i~a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 121 SASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--YLGWQGMYWLMAALLIPCIIATLLAPEPT 198 (491)
T ss_pred HHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999988762 24899999998887766655555678765
Q ss_pred hHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcH
Q 041698 227 NSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYA 306 (355)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
+.. ++ ++. . +++...++++.++++..+......+. .............
T Consensus 199 ~~~---~~-~~~------------~-------------~~~~~~~l~~~~~~~~~~~~ll~~~l---~~~~~~~~~~~~~ 246 (491)
T PRK11010 199 DTI---PV-PKT------------L-------------EQAVVAPLRDFFGRNNAWLILLLIVL---YKLGDAFAMSLTT 246 (491)
T ss_pred ccc---cc-ccc------------h-------------hhhHHHHHHHHHcCcCHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 310 00 000 0 00001123444443332222222211 1111112223344
Q ss_pred HHHHHhcCCCCcHHHHHHH-HHHHHHHHHhhhhhheecccCCccccc
Q 041698 307 PVLFNTIGFGSDASLMSAV-ITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 307 ~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
|++.++.|++..+.+.... ...++.+++.+++|+++||+++|+.+.
T Consensus 247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~ 293 (491)
T PRK11010 247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALM 293 (491)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5555678999999998874 556899999999999999999887654
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=179.75 Aligned_cols=247 Identities=14% Similarity=0.149 Sum_probs=173.3
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-----chhHH-HHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhh
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQF-----GRKLS-MFFGGILFLAGALLNGFA---QAIWMLIVGRLLLGF 145 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~ 145 (355)
+|+|.++.++..+. .+...+ .+++|+++||+ ||||. ++.+.++.+++....++. .+.+.+....++.++
T Consensus 18 ~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~ 95 (356)
T TIGR00901 18 KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAF 95 (356)
T ss_pred cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 39999999999766 455554 99999999998 89887 567777777777777776 566777888888888
Q ss_pred cccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC-----ccchHHHHhhhHHHHHHHHHHhc
Q 041698 146 GIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG-----GWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
+.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+..+ .++||..|++.++..++..+..+
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 96 FSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999999988876322 13399999988887666555444
Q ss_pred c-ccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccc
Q 041698 221 I-LPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGI 299 (355)
Q Consensus 221 ~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (355)
+ .||+++. +.+.++ + + ++.+..++++++++..++.+......++. ....
T Consensus 176 ~~~~e~~~~---~~~~~~----------------~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 225 (356)
T TIGR00901 176 FLAKEPQED---ASVPKP----------------L--------T--QAVLKPIREFFQRKNMIQALLLLLLIVLY-KLGD 225 (356)
T ss_pred HhccCCCcc---cccchh----------------H--------H--HHHHHHHHHHHHhcCchHHHHHHHHHHHH-HHHH
Confidence 3 4664321 000000 0 0 00011233444433322223232222222 2333
Q ss_pred cchHhcHHHHHHhcCCCCcHHHHHHHHHH-HHHHHHhhhhhheecccCCcccccc
Q 041698 300 NVIMFYAPVLFNTIGFGSDASLMSAVITG-IVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.....+.|.+.++.|+++++.+......+ +..+++.++++++.||+|+|+.+..
T Consensus 226 ~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~ 280 (356)
T TIGR00901 226 SAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLL 280 (356)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44555667676678999999888777666 5788999999999999998877653
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-23 Score=188.20 Aligned_cols=240 Identities=12% Similarity=0.069 Sum_probs=177.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF-----AQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~ 150 (355)
+.+..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..+. .++++.+++.|++.|++.+..
T Consensus 48 ~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 127 (417)
T PRK10489 48 TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLG 127 (417)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999999999999999999999999988887777665442 467899999999999998888
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSII 230 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 230 (355)
.+...+++.|+.|+++|+++.++......+|..+||.+++.+.+ ..+|++.|++.++..++..+..+.+||+++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 203 (417)
T PRK10489 128 VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA---AGGVAWNYGLAAAGTFITLLPLLRLPALPPPP- 203 (417)
T ss_pred HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC-
Confidence 88889999999999999999999999999999999999999876 45799999887777666655566677654210
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF 310 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
.+.++ ..++ .++.++..++++..+......+. .. . ......+.|.+.
T Consensus 204 --~~~~~----------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~~~~~p~~~ 250 (417)
T PRK10489 204 --QPREH----------------PLRS----------LLAGFRFLLASPVVGGIALLGGL---LT-M-ASAVRVLYPALA 250 (417)
T ss_pred --ccccc----------------chHH----------HHHHHHHHHcChHHHHHHHHHHH---HH-H-HHhHHHhhHHHH
Confidence 00000 0000 00112222332222111111111 11 1 123445567677
Q ss_pred Hh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 311 NT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 311 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
++ .|.++...+.......++.+++.++.+++.||.++++.+.
T Consensus 251 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~ 293 (417)
T PRK10489 251 DEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLML 293 (417)
T ss_pred HhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHH
Confidence 66 8999999999999999999999999999999877666543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=174.99 Aligned_cols=237 Identities=14% Similarity=0.189 Sum_probs=160.1
Q ss_pred ccccCCcchhHHHHHHHH-HHHHHHHHhhhhhhhhhchhHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 73 QYCQYDSETLTMFTSSLY-LAALLSSLVASRVTRQFGRKLSM-FFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~-l~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
+|+|+|.+++|++.+... .++.++.+++++ +||+||||.+ +.+.++.+++..+.+++++++.+++.+.+.|...+..
T Consensus 44 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 122 (393)
T PRK15011 44 DEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTA 122 (393)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 344999999999987654 466666666666 9999999875 5566666677788889999998877666555555567
Q ss_pred ccchhhhhhhcCCCCcc--cchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChh
Q 041698 151 NQSVPLYLSEMAPYRFR--GALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPN 227 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~ 227 (355)
.+....+..|+.++++| +...+....+.++|.+++|++++.+.+ +.|||..|++.++..++..+. .+++||+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~---~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 199 (393)
T PRK15011 123 NPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM---GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK 199 (393)
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH---hcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 78888888888766655 344578888999999999999999987 568999999888776655444 455777652
Q ss_pred HHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHH
Q 041698 228 SIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAP 307 (355)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
.. ++ ++ + + .. ...+++ +..+......... .........+.|
T Consensus 200 ~~---~~-~~-------------------------~-~---~~---~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~p 240 (393)
T PRK15011 200 EL---PL-AT-------------------------G-T---LE---APRRNR--RDTLLLFVICTLM-WGTNSLYIINMP 240 (393)
T ss_pred CC---cc-cc-------------------------c-c---cc---cccccc--ccHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 10 00 00 0 0 00 000011 1111111111111 122233344566
Q ss_pred HHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 308 VLF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 308 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
.+. +++|+++.+.+.+.....++.+++.++.|+++||++||+.+.
T Consensus 241 ~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~ 286 (393)
T PRK15011 241 LFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMR 286 (393)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 555 568999888888888777888999999999999999998654
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-22 Score=176.96 Aligned_cols=235 Identities=13% Similarity=0.163 Sum_probs=171.4
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
++|+|..+.|++.+...++..+.+++.|+++||+|||+++..+.++.+++.+.+.++++++.+++.|+++|++.+...+.
T Consensus 40 ~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~ 119 (400)
T PRK11646 40 QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPP 119 (400)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhc
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIER 232 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~ 232 (355)
..+++.|++|+++|++++++.....++|..+||.+++.+.+ ++||+.|++.++..++..+. .++.||.+.
T Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~----- 190 (400)
T PRK11646 120 RTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----YDFRLVCATGAVLFVLAAAFNAWLLPAYKL----- 190 (400)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHhCCcccc-----
Confidence 99999999999999999999999999999999999999874 58999999887765554433 344554311
Q ss_pred CChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh
Q 041698 233 GRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT 312 (355)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (355)
.+.++ +.++.+++.++++........... . .........+.|.+.++
T Consensus 191 ~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~p~~~~~ 237 (400)
T PRK11646 191 STVRT-----------------------------PVREGMTRVLRDKRFVTYVLTLTG-Y---YMLAVQVMLMLPIMVND 237 (400)
T ss_pred cccch-----------------------------hhHHHHHHHHcCchHHHHHHHHHH-H---HHHHHHHHHhhhhhHHh
Confidence 00000 001123333333222111111111 1 11111234567777777
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhhhhhheec-ccCCccc
Q 041698 313 IGFGSDASLMSAVITGIVNVVATMVSIYGVD-KWGRRFL 350 (355)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~r~~ 350 (355)
.+.++.+.+.......+....+....++..| |.+.++.
T Consensus 238 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 276 (400)
T PRK11646 238 IAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHR 276 (400)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 6667778888877777776666555555554 4554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-22 Score=177.82 Aligned_cols=238 Identities=11% Similarity=0.065 Sum_probs=168.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSM----FFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|+|..+++++.+++.+...++++++|+++||+||++.. ..+..+..+ ..+..+++++.+++.|.++|.+.+...
T Consensus 35 g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~ 112 (382)
T TIGR00902 35 GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGM 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccch
Confidence 99999999999999999999999999999999985433 222222222 234467899999999999999888888
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHh
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIE 231 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 231 (355)
|...++..++ +++|++..+....+.++|.+++|++++.+.+ ..|||..|++.....++..+ .+.++|+++.
T Consensus 113 p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~---~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~--- 183 (382)
T TIGR00902 113 PIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG---MFDEQNILAILTAGLAFMLI-GFLIKPTIPP--- 183 (382)
T ss_pred hHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH---HcChhHHHHHHHHHHHHHHH-HHHcCCCCCC---
Confidence 8888887665 4778999999999999999999999999988 57899999876654333322 2233333210
Q ss_pred cCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH
Q 041698 232 RGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN 311 (355)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
+++.++ ++.++.++.++++|++. .+......++ ..........+.|.+.+
T Consensus 184 ~~~~~~--------------------------~~~~~~~~~~~~l~~~~---~~~~l~~~~l-~~~~~~~~~~~~~~~l~ 233 (382)
T TIGR00902 184 KDAIPE--------------------------DESQGDSAFIALLKNPM---NLRFLAAVCL-IQGAHAAYYGFSAIYWQ 233 (382)
T ss_pred Cccccc--------------------------cccccchhHHHHHcChH---HHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 000000 00001122344444432 2222222222 22334455556677778
Q ss_pred hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 312 TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
+.|.++.+.+.......++.+++..+.+++.||+++|+++.++
T Consensus 234 ~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~ 276 (382)
T TIGR00902 234 AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLIS 276 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHH
Confidence 8999999999999999999999999999999999999877653
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-22 Score=178.23 Aligned_cols=262 Identities=13% Similarity=0.163 Sum_probs=184.3
Q ss_pred hhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-----ch
Q 041698 35 LIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQF-----GR 109 (355)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----Gr 109 (355)
+..|...+..... +|.++++. |+|.+++|++..+... .+..+++|+++||+ ||
T Consensus 9 ~~~~~~~~~~~~~--~~~~l~~~------------------g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~ 66 (402)
T PRK11902 9 FASGLPLALTSGT--LQAWMTVE------------------GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGR 66 (402)
T ss_pred HHHhhhHHHHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCc
Confidence 3344444444433 67777665 9999999999777765 69999999999999 87
Q ss_pred hH-HHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHH
Q 041698 110 KL-SMFFGGILFLAGALLNGFA---QAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIA 185 (355)
Q Consensus 110 r~-~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~ 185 (355)
|| .++++.++.+++..+.++. ++++.+.+..++.++..+...++..+++.|+.|+++|+++.++...+..+|.+++
T Consensus 67 rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g 146 (402)
T PRK11902 67 RRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVS 146 (402)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHH
Confidence 75 7888888888888777776 4578888888888888888899999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Q 041698 186 NVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEAS 265 (355)
Q Consensus 186 ~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (355)
+.++..+.+. ..+||..|++.++..++..+..+++||++++. ++.++..
T Consensus 147 ~~l~~~l~~~--~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~~-------------------------- 195 (402)
T PRK11902 147 GGLALWLADR--VLGWGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSLG-------------------------- 195 (402)
T ss_pred hHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccchhH--------------------------
Confidence 9999888762 14899999988887666555555677764320 0000000
Q ss_pred hccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHH-HHHHHHhhhhhheecc
Q 041698 266 RQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITG-IVNVVATMVSIYGVDK 344 (355)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~ 344 (355)
++.++.++++++++..+......++...... .......+++.++.|+++++.+......+ ++.+++.++++++.||
T Consensus 196 ~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~---~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r 272 (402)
T PRK11902 196 EAVVGPLRDFFSRRGAWALLLLIVLYKLGDA---FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR 272 (402)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH---HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 0001124445554443332222222111111 11123345556678999998888876654 4689999999999999
Q ss_pred cCCccccc
Q 041698 345 WGRRFLFL 352 (355)
Q Consensus 345 ~g~r~~~~ 352 (355)
+++|+.+.
T Consensus 273 ~g~~~~l~ 280 (402)
T PRK11902 273 LGLYRSLM 280 (402)
T ss_pred HhHHHHHH
Confidence 99887654
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-22 Score=176.12 Aligned_cols=237 Identities=15% Similarity=0.133 Sum_probs=166.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchh----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRK----LSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.|..++|++.+++.++..++++++|+++||+||| +.+.+...+. .......++++|.+++.|++.|++.+...
T Consensus 35 g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~ 112 (382)
T PRK11128 35 GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLV 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccc
Confidence 88999999999999999999999999999999984 3333222221 22223345889999999999999988888
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHh
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIE 231 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 231 (355)
+...++..++ +++|++..+......++|..++|++++++.+ +++||..|++.++..++..+..++.||+++.
T Consensus 113 ~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~---~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~--- 184 (382)
T PRK11128 113 PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS---WFGEQAILWILTAGVASMLLGQLLRPTIMPQ--- 184 (382)
T ss_pred cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH---HcChhHHHHHHHHHHHHHHHHHHccCCCCCc---
Confidence 9888887776 4568888899999999999999999999987 5789999987776544444333444543210
Q ss_pred cCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH
Q 041698 232 RGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN 311 (355)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
++.++ +.++...+++++++++..+.... ..++.. ........+.+.+.+
T Consensus 185 -~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~---~~~l~~-~~~~~~~~~~~~~~~ 233 (382)
T PRK11128 185 -GESRQ--------------------------QESAGWPAWKALLKEPTVWRFLL---CVSLLQ-GSHAAYYGFSAIYWQ 233 (382)
T ss_pred -ccccc--------------------------ccccccchHHHHHcChhHHHHHH---HHHHHH-HHhHhHHHHHHHHHH
Confidence 00000 00001223455555443322222 222221 222334455566667
Q ss_pred hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 312 TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+.|+++.+.+.......++.++..++.+++.||+++|+.+..
T Consensus 234 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~ 275 (382)
T PRK11128 234 AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLL 275 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 789998889999898889999999999999999999987654
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=168.58 Aligned_cols=154 Identities=13% Similarity=0.156 Sum_probs=135.9
Q ss_pred cccccCCcch-hHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 72 NQYCQYDSET-LTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 72 ~~~~~~s~~~-~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
.+|+|+|.++ .|.+.++++.+++++.++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|+++|+.
T Consensus 53 ~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~ 132 (511)
T TIGR00806 53 LTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAAR 132 (511)
T ss_pred HHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHh---hhHHHHHHHHHHhccccCChh
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLG---GAMVPALIITVGSMILPDTPN 227 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~---~~~~~~~~~~~~~~~~~e~~~ 227 (355)
. +...++.+|+|+++|+++.++..++..+|.+++++++..+. +++||+.+. +......+.++..+++|..++
T Consensus 133 ~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~----s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 133 I-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV----TLGWISYSTLNIISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred H-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 9 99999999999999999999999999999999999999944 367887554 334444445556678886665
Q ss_pred HHH
Q 041698 228 SII 230 (355)
Q Consensus 228 ~~~ 230 (355)
...
T Consensus 208 sl~ 210 (511)
T TIGR00806 208 SLF 210 (511)
T ss_pred hhh
Confidence 443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8e-22 Score=165.11 Aligned_cols=254 Identities=15% Similarity=0.167 Sum_probs=166.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+.+....|.+.+.|.+.+.+.++.+|.++||+|||+++++|.+..++...+.+.++|+..+.++|++.|+..| ......
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence 4577889999999999999999999999999999999999999999999999999999777778999999976 566778
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc---CCCccchHHHHhhhHHHHHH-HHHHhccccCChhHHHh
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK---IHGGWGWRLSLGGAMVPALI-ITVGSMILPDTPNSIIE 231 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~---~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~ 231 (355)
++++|.+++++|+..++.....+++|.++||.+++++.+ ..+.+.+-.+-++..+.+.. .....+++||+-..
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~--- 219 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPL--- 219 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccc---
Confidence 999999999999999999999999999999999999987 33322222212222222222 33345678988321
Q ss_pred cCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhcc-Cchh--HHHHHHHHHHHHHcccccchHhcHHH
Q 041698 232 RGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQK-KYRP--HLTMAVLIPFFQQFTGINVIMFYAPV 308 (355)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
+++.++... .++. .+.+.+..... +..+ . ...|. +... ..+..+.+..+.....+....++.+.
T Consensus 220 rk~~~~~~~-~~~~---~~~~~~~~~~~------~~~~--v-~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~ 286 (451)
T KOG2615|consen 220 RKRNDEHST-LQEA---ADDRLALLKFA------RIFK--V-AALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLF 286 (451)
T ss_pred hhhcccccc-hhhh---hhhhhhhcchh------hhhh--h-hhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 111111000 0000 00000000000 0000 0 00111 1111 11122222222222223334444444
Q ss_pred HH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccC
Q 041698 309 LF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWG 346 (355)
Q Consensus 309 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 346 (355)
+. ..+|+++.+.|.+.+..++.+.+.+....+..+|..
T Consensus 287 l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~ 325 (451)
T KOG2615|consen 287 LTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYK 325 (451)
T ss_pred hhcCccCCChhhheeeeehhhHHHHHHHHhccccccccc
Confidence 42 558999999999999999999999888888887765
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-23 Score=175.34 Aligned_cols=276 Identities=16% Similarity=0.165 Sum_probs=207.2
Q ss_pred HHHHhhhhhhhhccccccccccCchhhhhhhcccccccccc--------------------------------ccccccc
Q 041698 27 CIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQA--------------------------------NESTNQY 74 (355)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~ 74 (355)
....+++.+.+.+......++ +|.|+.+...+-...++. .+..+++
T Consensus 23 lviv~ialllDnmL~~vivPi--iP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~ 100 (464)
T KOG3764|consen 23 LVIVSIALLLDNMLYTVIVPI--IPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAIS 100 (464)
T ss_pred EEEEehhhhccCccceeeecc--CccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccC
Confidence 334555667888888888888 788887765200000000 0122456
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
.+-+.+++|++..++.+.+.+.+++.|.+.||+|+|..+++|+.....+++++++.++|++++++|.+||+|.+...+..
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCc-ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcC
Q 041698 155 PLYLSEMAPYRF-RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERG 233 (355)
Q Consensus 155 ~~~~~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 233 (355)
.+++++.+|++. |++++|+...+.++|.++||.+++.+.+ ..|.+.+|.+.+++.++-..+.+++-|..+.
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe---~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~----- 252 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE---FAGKSAPFLVLAIVLLLDGALQLLVIEPTEM----- 252 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHh---hcCCcCcHHHHHHHHHHHHHHHHheeCcccc-----
Confidence 999999999765 7999999999999999999999999988 5689999999999988877776665433210
Q ss_pred ChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHH---H-H
Q 041698 234 RHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAP---V-L 309 (355)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~ 309 (355)
++++..+..++.++++.+.. ........++. ..+.+.-| . .
T Consensus 253 ----------------------------~~~~~~~~~~~~~Ll~dP~I---~~~agai~~~n----~~lafLePtlslwm 297 (464)
T KOG3764|consen 253 ----------------------------DPDSTEQGTPMWSLLMDPYI---LLIAGAITFSN----SSLAFLEPTLSLWM 297 (464)
T ss_pred ----------------------------CccccccCccHHHHHhCchH---hhhhcchhhcc----chHHHhCcccHHHH
Confidence 00012223445556555432 22222222221 12222222 2 3
Q ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCC
Q 041698 310 FNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGR 347 (355)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 347 (355)
.+....+.-+.|..+...++...+++.+.|.+.||+++
T Consensus 298 ~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~ 335 (464)
T KOG3764|consen 298 LETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPH 335 (464)
T ss_pred HHhccCCCcceeeeecccccchhccCchHHHHHHhcCc
Confidence 34555445578899999999999999999999999984
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=169.22 Aligned_cols=244 Identities=16% Similarity=0.094 Sum_probs=159.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH---Hh-----hHHHHHHHHHHHhhhcc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG---FA-----QAIWMLIVGRLLLGFGI 147 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~-----~~~~~l~~~r~l~G~~~ 147 (355)
|++..+.+++.+++.++..+++++.|+++||+|||+.++.+....+++..... +. +.+..+++.+++.|++.
T Consensus 34 g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 113 (396)
T TIGR00882 34 GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVF 113 (396)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999887776655443221 11 23445667788899988
Q ss_pred cccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc-ccCCh
Q 041698 148 GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI-LPDTP 226 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~e~~ 226 (355)
+...+....+..|.. ++++...+......++|.+++|.+++.+.+ .+||..|++.+++.++..+..+. .||+|
T Consensus 114 ~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (396)
T TIGR00882 114 SAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS----IDPQIVFWLGSGFALILMLLLMFAKPKAP 187 (396)
T ss_pred ccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc----cCchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 888888887777753 334566777888889999999999998764 58999999888777665544443 34443
Q ss_pred hHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcH
Q 041698 227 NSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYA 306 (355)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
+.. +.+++ .+ .++++.+.++..++++++..+. .... .+.....+.....+.
T Consensus 188 ~~~----~~~~~-------~~--------------~~~~~~~~~~~~~~l~~~~~~~---~~l~-~~~~~~~~~~~~~~~ 238 (396)
T TIGR00882 188 SSA----TVANA-------LG--------------ANASAFSLKLALELFRQRKFWM---FVLY-VVGVACVYDVFDQQF 238 (396)
T ss_pred hhh----hhhcc-------cc--------------cccCCCCHHHHHHHHcCCcHHH---HHHH-HHHHHHHHHHHHHHH
Confidence 210 00000 00 0000011122344444433222 1111 111112222233344
Q ss_pred HHHHHhc----CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 307 PVLFNTI----GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 307 ~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
+.+.++. +.+....+...+...+..+++....+++.||+++|+.++++
T Consensus 239 ~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~ 290 (396)
T TIGR00882 239 ANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIA 290 (396)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 5444432 44556678888888889999999999999999999977543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=189.26 Aligned_cols=248 Identities=13% Similarity=0.047 Sum_probs=170.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhhhcccccccch
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG---FAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
+....+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.. .+++++.++++|+++|++.+...++.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 345679999999999999999999999999999999999877666655443 45789999999999999999999999
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCC------CccchHHHHhhhHHH-HHHHHHHhccccCChh
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIH------GGWGWRLSLGGAMVP-ALIITVGSMILPDTPN 227 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~------~~~~w~~~~~~~~~~-~~~~~~~~~~~~e~~~ 227 (355)
.+++.|++|+++|++++++...+..+|.++++.+++++.... +..+|++.+.+..+. .++.++..+.+||+|+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 999999999999999999999999999999999999987630 001344444333333 3333344456777764
Q ss_pred HHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHH
Q 041698 228 SIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAP 307 (355)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
....+.+.++ ... .+.....++.+++.+..+..++...+.++ .......+.|
T Consensus 205 ~~~~~~~~~~-----------~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 256 (1146)
T PRK08633 205 AAPEVFDKKK-----------YLF-------------PKLLWRNLKLLRSDRVLWLAIIGLSYFWF----ISQLAQANFP 256 (1146)
T ss_pred CCcccccccc-----------ccc-------------HHHHHHHHHHHhcCcHHHHHHHHHHHHHH----HHHHHHHhhH
Confidence 2111000000 000 00001123333333322222222222111 1222333444
Q ss_pred HHH-HhcCCCCc-HHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 308 VLF-NTIGFGSD-ASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 308 ~~~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.+. +.+|++.. ..+++.+...++.+++.++.+++.||+++++.+.+
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~ 304 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPL 304 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhH
Confidence 444 56899988 88999999999999999999999999998876654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-21 Score=191.61 Aligned_cols=239 Identities=12% Similarity=0.051 Sum_probs=168.5
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhh
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFF---GGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPL 156 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 156 (355)
...++..+++.+.+.++++++|+++||+|||+++.. +.++..+..+.....++++.++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 567888999999999999999999999999998643 22233333333334589999999999999999999999999
Q ss_pred hhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChH
Q 041698 157 YLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHE 236 (355)
Q Consensus 157 ~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 236 (355)
++.+++++++|++++++..++.++|.++||++++++.. ..+|++.|+..++..++.+++.+++|+++.... ..+.+
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 207 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI---SGNFVILVALLMGIAVLGWLASLFIPKTGNAAP-DLKID 207 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCC-CCeec
Confidence 99999999999999999999999999999999999987 468999986555555555555666776542100 00000
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCC
Q 041698 237 EAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGF 315 (355)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~ 315 (355)
.. ..++ ....++.+.+.+..+. ..+..+........+..+.|.+.+ .+|.
T Consensus 208 ~~---------------~~~~----------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~~~g~ 258 (1140)
T PRK06814 208 RN---------------IIRS----------TITLLKYAKADKRIWL----AILGISWFWLVGAVVLSQLPLLAKETLGG 258 (1140)
T ss_pred cc---------------hHHH----------HHHHHHHHhcCchHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHcCC
Confidence 00 0000 0012333333332222 222222222222344445666664 4799
Q ss_pred CCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccc
Q 041698 316 GSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLF 351 (355)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 351 (355)
++...+.+.+..+++.+++.++.+++.|+..+++.+
T Consensus 259 ~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~ 294 (1140)
T PRK06814 259 DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYV 294 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeee
Confidence 999999999999999999999999999887766544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=165.39 Aligned_cols=138 Identities=24% Similarity=0.368 Sum_probs=116.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhh
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLY 157 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 157 (355)
+.....|+.+++.++..++.++.|+++|.||||.+++.+.++..+|+++++.++|...++++..+.|+|.|.... ....
T Consensus 76 ~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~ 154 (599)
T PF06609_consen 76 GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALA 154 (599)
T ss_pred CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHH
Confidence 457778999999999999999999999999999999999999999999999999999999999999999877664 4556
Q ss_pred hhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh
Q 041698 158 LSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 158 ~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
++|..|.|.|.....+...........++.++..+.. +.+|||.|++..+...+.++..
T Consensus 155 isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 155 ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHHHHHHHHHHH
Confidence 8999999999877776666655555567777766554 4589999998888766655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9e-20 Score=154.73 Aligned_cols=266 Identities=13% Similarity=0.122 Sum_probs=202.1
Q ss_pred hhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchh
Q 041698 31 AMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRK 110 (355)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr 110 (355)
+.-.++.|+......+. +|.+++.| +++..+.+++..+++.|+.+.+++.|++.+|+|+|
T Consensus 19 t~lFfl~G~~~~l~diL--ip~l~~~f------------------~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk 78 (422)
T COG0738 19 TSLFFLWGFITCLNDIL--IPHLKEVF------------------DLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYK 78 (422)
T ss_pred HHHHHHHHHHhhcchhh--HHHHHHHh------------------CccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhH
Confidence 33345666655555555 66666666 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHH
Q 041698 111 LSMFFGGILFLAGALLNG---FAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANV 187 (355)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 187 (355)
+.+++++.+.++++.++. ..++|..++++-++.|.|.+...++...++....+++.-.+.+++.+...++|.+++|+
T Consensus 79 ~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~ 158 (422)
T COG0738 79 AGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPL 158 (422)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999999999884 66889999999999999999999999999999999988899999999999999999999
Q ss_pred HHHHhhcCC-----C-----------ccchHHHHhhhHHHHHHHHHHhcc--ccCChhHHHhcCChHHHHHHHHHHhCCC
Q 041698 188 LNYFFNKIH-----G-----------GWGWRLSLGGAMVPALIITVGSMI--LPDTPNSIIERGRHEEAREELRKVRGVN 249 (355)
Q Consensus 188 i~~~~~~~~-----~-----------~~~w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (355)
+++.+.... + -..|+++|...+...+++.+.... .|+.+..
T Consensus 159 ~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~--------------------- 217 (422)
T COG0738 159 LGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA--------------------- 217 (422)
T ss_pred HHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc---------------------
Confidence 999887620 0 124788887777665555554433 3433210
Q ss_pred ccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh-cCCCCcHHHHHHHHHH
Q 041698 250 DVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT-IGFGSDASLMSAVITG 328 (355)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 328 (355)
.++..+.++....++++.++.+ ...++.++..........+.+.+..+ .|+++.++....+..+
T Consensus 218 -----------~~~~~~~~~~~~~~l~~~~~~~----~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~ 282 (422)
T COG0738 218 -----------APSLGASGSAGLSSLFQNKHLR----LGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFW 282 (422)
T ss_pred -----------cccccccccchHHHHHhChHHH----HHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 0000111111344555544333 33333444444555666777777766 8999999999999999
Q ss_pred HHHHHHhhhhhheecccCCccccc
Q 041698 329 IVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 329 ~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
++.++|++++-++..|+...|.+.
T Consensus 283 ~~~~vGRFig~~lm~~~~~~k~La 306 (422)
T COG0738 283 VGFMVGRFIGSALMSRIKPEKYLA 306 (422)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999999999999998777654
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=164.37 Aligned_cols=244 Identities=17% Similarity=0.086 Sum_probs=146.2
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH---Hhh-----HHHHHHHHHHHhhhc
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG---FAQ-----AIWMLIVGRLLLGFG 146 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~-----~~~~l~~~r~l~G~~ 146 (355)
+|+|..+.|++.+++.++..+++++.|+++||+|||++++++..+.+++..... .++ .....++++++.|.+
T Consensus 41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (420)
T PRK09528 41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG 120 (420)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 399999999999999999999999999999999999999887666554433211 111 111123334444443
Q ss_pred ccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc-cCC
Q 041698 147 IGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL-PDT 225 (355)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~e~ 225 (355)
.....+....+..+ . .+++++.++......++|..++|.+++.+.+ .+|++.|++.++..++..+..+++ +|+
T Consensus 121 ~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 121 FLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN----INPQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred hccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh----cCchHhHHHHHHHHHHHHHHHhcccccc
Confidence 33333333333322 2 3456788888889999999999999998875 479999998887766655555444 343
Q ss_pred hhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhc
Q 041698 226 PNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFY 305 (355)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
++....+++ ++ .++++...+...+.++++..+......+.... .......+
T Consensus 195 ~~~~~~~~~-~~------------------------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~----~~~~~~~~ 245 (420)
T PRK09528 195 PSTAKVANA-LG------------------------ANASAVSLKDALALLKLPKFWFLVLYVIGVAC----FYDVFDQQ 245 (420)
T ss_pred cchhhhccc-hh------------------------cccccccHHHHHHHccCCCeEeehHHHHHHHH----HHHHHHHH
Confidence 321000000 00 00000001112233333322221211111111 11112222
Q ss_pred HHHHHH----hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 306 APVLFN----TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 306 ~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.|.+.. +.+.+..+.+...+...+..+++.++.|++.||+++|+.+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 297 (420)
T PRK09528 246 FPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLL 297 (420)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 333332 235666677888888899999999999999999999987654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-19 Score=160.49 Aligned_cols=135 Identities=16% Similarity=0.182 Sum_probs=121.4
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHhhhcccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQ-FGRKLSMFFGGILFLAGALLNGFAQAIWM-LIVGRLLLGFGIGFAN 151 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~ 151 (355)
++|++..+.+++.+.+.....+..+++|+++|| +||||+++++.++++++++.++++.+... +.++|+++|++.|...
T Consensus 44 ~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~ 123 (489)
T PRK10207 44 QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFK 123 (489)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcccccc
Confidence 349999999999999998888999999999999 99999999999999999999998876444 5589999999999999
Q ss_pred cchhhhhhhcCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHH
Q 041698 152 QSVPLYLSEMAPYRF--RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVP 211 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~ 211 (355)
+...+++.|.+|+++ |.++.++++.+.++|..++|.+++++.+ +.|||+.|++.++.
T Consensus 124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~---~~gw~~~F~i~~i~ 182 (489)
T PRK10207 124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD---KFGYSVTYNLCGAG 182 (489)
T ss_pred CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH---hhChHHHHHHHHHH
Confidence 999999999998774 5789999999999999999999999988 57899999886543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-20 Score=166.05 Aligned_cols=270 Identities=20% Similarity=0.279 Sum_probs=194.3
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHhhhccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGR-LLLGFGIGFA 150 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r-~l~G~~~g~~ 150 (355)
+++++.+.++++|+.++......+..++.+.+.||+|.|.+.+.|.++..++.++.+|++++|.+++.. ++.|+|.|..
T Consensus 73 ~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~ 152 (509)
T KOG2504|consen 73 MDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLI 152 (509)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhh
Confidence 455588999999999999999999999999999999999999999999999999999999999998877 8899999999
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc-cCChhHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL-PDTPNSI 229 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~e~~~~~ 229 (355)
+.+....+..++ +|+|+.+.++..++.++|..+-|.+..++.+ .+|||+.+++.+.+.+-.++....+ |.++...
T Consensus 153 ~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~---~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~ 228 (509)
T KOG2504|consen 153 YLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLS---KYGWRGALLIFGGISLNVLVAGALLRPLSPPKK 228 (509)
T ss_pred hcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence 999999999887 5779999999999999999999999999988 6899999998888876655554443 3222110
Q ss_pred HhcCChHHH--------HHHHH-HHhCCC--ccH---HHHHHHHHHHHHhh--ccccch----hhhhccCchhHHHHHHH
Q 041698 230 IERGRHEEA--------REELR-KVRGVN--DVE---EEFNDLVAASEASR--QVEHPW----KNLLQKKYRPHLTMAVL 289 (355)
Q Consensus 230 ~~~~~~~~~--------~~~~~-~~~~~~--~~~---~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~ 289 (355)
....++.+. ..... +....+ ... .+..+..+..+..+ ..+... .++++. +.++...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~----~~fl~~~ 304 (509)
T KOG2504|consen 229 PNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKD----PKFLLLA 304 (509)
T ss_pred chhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcC----chHHHHH
Confidence 000000000 00000 000000 000 00000000000000 001111 233333 3455555
Q ss_pred HHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcc
Q 041698 290 IPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRF 349 (355)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~ 349 (355)
+.......++.....++|.+.+..+++..++..+.++.++..++++++.|++.|+...++
T Consensus 305 ~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~ 364 (509)
T KOG2504|consen 305 LSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRA 364 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccch
Confidence 656666666777788888888899999999999999999999999999999999987443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-19 Score=163.49 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=121.5
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHhhh
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA------QAIWMLIVGRLLLGF 145 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~ 145 (355)
++++|+|..+.+++.+.. ...+.++++.|+++||+|||+++.++.+++.++.++++++ ++++.+++.|++.|+
T Consensus 54 ~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~ 132 (591)
T PTZ00207 54 QARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTL 132 (591)
T ss_pred HHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 444499999999998874 4556778889999999999999999999999999999987 689999999999999
Q ss_pred cccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHH-HHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccc-
Q 041698 146 GIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILI-ANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MIL- 222 (355)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~- 222 (355)
+.+...+.....+.+|+| ++||++.++...+.++|.++ +++..+++.+ +|+..|++.+++.++..+.. .++
T Consensus 133 G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-----~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 133 GCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-----NTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHhhee
Confidence 999999999999999996 77999999999999999975 5555555443 57777777777766554433 333
Q ss_pred -cCChhH
Q 041698 223 -PDTPNS 228 (355)
Q Consensus 223 -~e~~~~ 228 (355)
|+.+++
T Consensus 207 ~p~~~~~ 213 (591)
T PTZ00207 207 LPPFHLT 213 (591)
T ss_pred CCcchhh
Confidence 444444
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=143.47 Aligned_cols=237 Identities=19% Similarity=0.213 Sum_probs=191.3
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
++|+|+|.+..|+++++..+...+.+++..+++.|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.+.+...
T Consensus 39 r~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~n 117 (395)
T COG2807 39 RQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVIN 117 (395)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHH
Confidence 55669999999999999999999999999999999999999999999999999998877 77889999999999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHh
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIE 231 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 231 (355)
...+.++.+.+|+ +-+..+++|....++|..+++.++..+.+.. .+||.....-+.++++.++.++ |...|.
T Consensus 118 VLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~~Wl--Pq~~r~--- 189 (395)
T COG2807 118 VLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALLIWL--PQALRE--- 189 (395)
T ss_pred HhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHHHHh--hhcccc---
Confidence 9999999999974 4699999999999999999999999998743 3799988887887777665543 332110
Q ss_pred cCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH
Q 041698 232 RGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN 311 (355)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
+ ......+..+...+++++ ..+...+++..+...++....|+|.++.
T Consensus 190 --~---------------------------~~~~~~~~~~~~~vw~~~----~aW~vtLfmGlqS~~~Y~~~~WLP~ili 236 (395)
T COG2807 190 --Q---------------------------AASIATKLVSVRKVWRSP----LAWQVTLFMGLQSLLYYIVIGWLPAILI 236 (395)
T ss_pred --c---------------------------ccccccccccccccccCc----hhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 0 000111112223344443 3444455556666677888999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccc
Q 041698 312 TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFL 350 (355)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~ 350 (355)
+.|+|+.+++.+.+...+..++.++....+.+|...++.
T Consensus 237 ~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~ 275 (395)
T COG2807 237 DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRP 275 (395)
T ss_pred HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 999999999999999999999999999999997654443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-18 Score=155.69 Aligned_cols=141 Identities=17% Similarity=0.239 Sum_probs=128.0
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQ-FGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
+|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.+.++|++.|++.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 48999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCc---ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH
Q 041698 154 VPLYLSEMAPYRF---RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 154 ~~~~~~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
..++++|++|+++ |+++.++.+.+.++|.+++|.+++.+.+ +.+|++.|.+.++..++..+.
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~---~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE---NYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH---hcChHHHHHHHHHHHHHHHHH
Confidence 9999999998764 8889999999999999999999999987 568999998877554444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-19 Score=160.28 Aligned_cols=241 Identities=8% Similarity=0.011 Sum_probs=155.5
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhch-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGR-KLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
++++|++.+++|++.+++.++..++++++|+++||+|| |+++.++.++..++..+..+.++++.+.+.|++.|++.+..
T Consensus 30 ~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (418)
T TIGR00889 30 SKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPT 109 (418)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccH
Confidence 34459999999999999999999999999999999964 78888888888888888889999999999999999987766
Q ss_pred ccchhhhhh--------hcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc
Q 041698 151 NQSVPLYLS--------EMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL 222 (355)
Q Consensus 151 ~~~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (355)
.+...++.. |......|.+..+ .+|.+++|.+++.+.. ...|+. |++.++..++..+..+++
T Consensus 110 ~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~---~~~~~~-f~~~~~~~~~~~~~~~~~ 179 (418)
T TIGR00889 110 IALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDI---ELSNIQ-LYITAGSSALLGVFALTL 179 (418)
T ss_pred HHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcc---cchhHH-HHHHHHHHHHHHHHHhcC
Confidence 665554432 2222233445444 3678888888887743 234554 445555555544455677
Q ss_pred cCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccch
Q 041698 223 PDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVI 302 (355)
Q Consensus 223 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (355)
||+|+.. ++.++ + . ++ ..+.+.++.+|.+.....+...++. . ......
T Consensus 180 ~e~~~~~---~~~~~------------~----------~-~~--~~~~~~~~~~k~~~~~~~~~~~~~~---~-~~~~~~ 227 (418)
T TIGR00889 180 PDIPVAK---STAKM------------S----------I-KV--MLGLDAFILFKNKRMAIFFFFSMLL---G-APLQIT 227 (418)
T ss_pred CCCCCCc---ccccc------------C----------H-HH--HhhhhHHHHhcCCCeeeHHHHHHHH---H-hHHHHH
Confidence 8875310 00000 0 0 00 0001122333333322222222221 1 111223
Q ss_pred HhcHHHHHHhcCCCC--------cHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 303 MFYAPVLFNTIGFGS--------DASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 303 ~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
..+.+.+.++.|.++ ...+...+...+..+++.+..++++||+|+|+++..+
T Consensus 228 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~ 287 (418)
T TIGR00889 228 NIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLS 287 (418)
T ss_pred HHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 344455566666443 5568888889999999999999999999999887643
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-19 Score=160.82 Aligned_cols=246 Identities=13% Similarity=0.136 Sum_probs=163.5
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh----hchh-HHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHH
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQ----FGRK-LSMFFGGILFLAGALLNGFAQA------IWMLIVGRLL 142 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l 142 (355)
++|++..++|++.++..+..++..++.|+++|| +||| +.++++....+++.+++.+.++ .+.+++.+++
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYIL 108 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 349999999999999999999999999999998 6874 5677888888888777766543 4667778888
Q ss_pred hhhcccccccchhhhhhhcC-CCCcccchhhHHHHHHHHHHHHHHHHHHHhhcC----CCccchHHHHhhhHHHHHHHHH
Q 041698 143 LGFGIGFANQSVPLYLSEMA-PYRFRGALNIGFQLSITVGILIANVLNYFFNKI----HGGWGWRLSLGGAMVPALIITV 217 (355)
Q Consensus 143 ~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~----~~~~~w~~~~~~~~~~~~~~~~ 217 (355)
.+++.+...++..++..|.. ++++|++..++...+..+|..+++.+.+.+... .+..+||+.+.+.+++.++..+
T Consensus 109 ~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~ 188 (437)
T TIGR00792 109 LGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLI 188 (437)
T ss_pred HHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHH
Confidence 89988888888888888887 468899999999888888887777665554421 1246899999888887666554
Q ss_pred H-hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHc
Q 041698 218 G-SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQF 296 (355)
Q Consensus 218 ~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (355)
. .+.++|+++. .+.++ +++.+.++.++++++++.. +..... .+...
T Consensus 189 ~~~~~~~e~~~~----~~~~~-------------------------~~~~~~~~~~~~l~~~~~~---~~~~~~-~~~~~ 235 (437)
T TIGR00792 189 ICFFGTKERYSE----IPKNI-------------------------EKKLSLKQIFKALFKNDQL---LILCLA-YLFYN 235 (437)
T ss_pred HHHcCCEecCCC----CCccc-------------------------ccCCCHHHHHHHHhCCHHH---HHHHHH-HHHHH
Confidence 4 4556765420 00000 0000001122333333222 222212 11111
Q ss_pred ccccchHhcHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 297 TGINVIMFYAPVLFNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 297 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
........+.+++.+. .+ ++...+.......++.+++.++.++++||+|+|+.+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~ 292 (437)
T TIGR00792 236 LAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAG 292 (437)
T ss_pred HHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 2222222233444332 33 34556677777789999999999999999999987654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=154.41 Aligned_cols=170 Identities=16% Similarity=0.161 Sum_probs=131.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHhhhccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALL---NGFAQAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
|++..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+. ...+++...+++++++.|++.+....
T Consensus 282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 361 (490)
T PRK10642 282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTG 361 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888889999999999999999999999988887655443332 22234577788899999887777777
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhc
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIER 232 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 232 (355)
....++.|.+|++.|+++++.......++..++|.+.+++.+.. .+|+..++...+++++.++..+++||+|+++.++
T Consensus 362 ~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~--~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~ 439 (490)
T PRK10642 362 VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST--QNLMMPAYYLMVVAVIGLITGVTMKETANRPLKG 439 (490)
T ss_pred HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence 77888899999999999999754445566678888888876532 2577776666666666666666789999987754
Q ss_pred -----CChHHHHHHHHHHhC
Q 041698 233 -----GRHEEAREELRKVRG 247 (355)
Q Consensus 233 -----~~~~~~~~~~~~~~~ 247 (355)
++.||+++.+.++++
T Consensus 440 ~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 440 ATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred ccccccchhhHHHHhhcccc
Confidence 888999999888863
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=150.14 Aligned_cols=265 Identities=11% Similarity=-0.002 Sum_probs=173.1
Q ss_pred HhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHH--HHHHHHHHHHHHHhh-hhhhhh
Q 041698 30 AAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMF--TSSLYLAALLSSLVA-SRVTRQ 106 (355)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~s~~~l~~~~~~~~~-g~l~dr 106 (355)
+...++..|...+...+. +|.+.++. |.|.+++|++ .+.+.+...+.+++. ++..||
T Consensus 6 ~~~ly~~~g~~~~~~~p~--lp~~l~~~------------------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~ 65 (390)
T TIGR02718 6 LGLLYLSQGIPIGLAMDA--LPTLLRED------------------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR 65 (390)
T ss_pred HHHHHHHHHhHHHHHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 334456677766666555 67777666 8999999997 466778887888888 557999
Q ss_pred hchhHHHHHHHHHH-HHHHHHHH---HhhH-HHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHH
Q 041698 107 FGRKLSMFFGGILF-LAGALLNG---FAQA-IWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVG 181 (355)
Q Consensus 107 ~Grr~~l~~~~~~~-~~~~~~~~---~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 181 (355)
+||||..++...+. .+.....+ ...+ ...++..-++.++..+...+....+..|..++++++...+....+..+|
T Consensus 66 ~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG 145 (390)
T TIGR02718 66 LGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIG 145 (390)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHH
Confidence 99998876665332 22222222 1222 3344455555666677777778888888888888888888888888999
Q ss_pred HHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041698 182 ILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAA 261 (355)
Q Consensus 182 ~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (355)
.++++...+.+.+ ..+||..|++.++..++..+..++++|+++. +.+.++
T Consensus 146 ~~~g~~~~~~l~~---~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~------------------------ 195 (390)
T TIGR02718 146 FFGGGAGTLVLFG---KFGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPL------------------------ 195 (390)
T ss_pred HHHHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccch------------------------
Confidence 9999988888877 5789999999888776655555444443210 000000
Q ss_pred HHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHH-HHHHHhhhhhh
Q 041698 262 SEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGI-VNVVATMVSIY 340 (355)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~ 340 (355)
++..+.++.+|++..+......++.. ........+.+.+.++.|+++++.+......++ ..+++.++.|+
T Consensus 196 -----~~~~~~~~~l~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~ 266 (390)
T TIGR02718 196 -----ARRASLFRFFRRPLAWSLLALALLSA----MTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAW 266 (390)
T ss_pred -----hhHHHHHHHHcCcCHHHHHHHHHHHH----HHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 00112344454443332222222221 222233345566667789999999998887764 66777899999
Q ss_pred eecccCCcccccc
Q 041698 341 GVDKWGRRFLFLE 353 (355)
Q Consensus 341 l~d~~g~r~~~~~ 353 (355)
+.||+++|+.+..
T Consensus 267 l~~r~g~~~~l~~ 279 (390)
T TIGR02718 267 LVRRAGLWRTFIL 279 (390)
T ss_pred HHHHhhHHHHHHH
Confidence 9999999987653
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-17 Score=149.55 Aligned_cols=243 Identities=17% Similarity=0.192 Sum_probs=172.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-----QAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~ 150 (355)
.-|...++++..+..+...+.++++|.++||+.|||+++.+.++.++..++.++. .+.+.+++.-++.|++.+..
T Consensus 41 t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~ 120 (524)
T PF05977_consen 41 TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFF 120 (524)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence 4488999999999999999999999999999999999999998887766555432 47889999999999999999
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSII 230 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 230 (355)
.|+..+++.|..|+++...+.++.....++..++||.++|.+.. ..|-.+.|.+.++..++........+.+++.
T Consensus 121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva---~~G~~~~f~inalsfl~~i~~l~~~~~~~~~-- 195 (524)
T PF05977_consen 121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA---FFGAAAAFLINALSFLISILALLRWKPPPPP-- 195 (524)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccccccc--
Confidence 99999999999999999999999999999999999999999876 3456777777665544433333333322110
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF 310 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
+...+| +. .+++ +..++-+.+.+..+..+....+ +. .....+...+|.+.
T Consensus 196 -~~~~~e--~~-------------~~~l----------~~G~ryv~~~~~l~~~l~~~~~-~~---l~~~a~~aLlPl~a 245 (524)
T PF05977_consen 196 -SSLPRE--RF-------------FSAL----------REGLRYVRSSPPLRSVLLRSFL-FN---LFASAVWALLPLFA 245 (524)
T ss_pred -cccchh--hh-------------hhhH----------HHHHHHHhcchHHHHHHHHHHH-HH---HhhhHHHHhhhHHH
Confidence 000000 00 0000 1111111122222221211111 11 11223334567666
Q ss_pred H-hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 311 N-TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 311 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+ .+|.++...|++.+..+++.++|.++.+++.+|+++++++..
T Consensus 246 ~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~ 289 (524)
T PF05977_consen 246 RDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLL 289 (524)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHH
Confidence 4 588899999999999999999999999999999988776543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-16 Score=143.87 Aligned_cols=138 Identities=15% Similarity=0.216 Sum_probs=118.2
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhcccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQ-FGRKLSMFFGGILFLAGALLNGFAQ-AIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~ 151 (355)
++|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++..++++++ +.+.+.++|+++|++.|...
T Consensus 51 ~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~ 130 (500)
T PRK09584 51 QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFK 130 (500)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhccc
Confidence 349999999999888776766777899999999 5999999999999999999888874 56677789999999999999
Q ss_pred cchhhhhhhcCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHH
Q 041698 152 QSVPLYLSEMAPYRF--RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALI 214 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~ 214 (355)
+...+++.|++|+++ |..+.++++.+.++|..++|.+++++.+ +.|||+.|.+.++..++
T Consensus 131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~---~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA---KYGWSVAFALSVVGMLI 192 (500)
T ss_pred CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH---hhCHHHHHHHHHHHHHH
Confidence 999999999998654 4567889999999999999999999987 57899999987754443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.6e-16 Score=140.23 Aligned_cols=258 Identities=12% Similarity=-0.027 Sum_probs=160.8
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc-----hhHHHHHHHHHHH-HHHHHHHHhhHH-HHHHHHHHHhhhcc
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFG-----RKLSMFFGGILFL-AGALLNGFAQAI-WMLIVGRLLLGFGI 147 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~-~~l~~~r~l~G~~~ 147 (355)
+|+|.++++...+...+...+-.+ +|+++||++ ||+.++++.++.. ++....+..++. ....+..++.+++.
T Consensus 56 lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 134 (468)
T TIGR00788 56 LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAK 134 (468)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 399999999999999999999666 999999997 7788888877763 333333333454 34444889999999
Q ss_pred cccccchhhhhhhcCCCCcccch---hhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 148 GFANQSVPLYLSEMAPYRFRGAL---NIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
+...++..++..|..+ +++... .+......++|.++++.+++.+.+ ..+|+..|++.++..++..+..++++|
T Consensus 135 a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~---~~~~~~~f~~~a~l~ll~~~~~~~~~E 210 (468)
T TIGR00788 135 ALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD---KTLTRILFLITAALLLLQLFVSNLSKE 210 (468)
T ss_pred HHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH---hcCcchHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999998 544443 334444456899999999999887 568999999888877766555677788
Q ss_pred ChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHh
Q 041698 225 TPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMF 304 (355)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (355)
++.....+.+ ++.. ... .... ....+..++........++++..++.+...++.+ ..... .....
T Consensus 211 ~~~~~~~~~~-~~~~-----~~~---~~~~----~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~-~~~~~-~~~~~ 275 (468)
T TIGR00788 211 RRAFVRPRIG-TYLE-----MNM---ALLT----LGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSY-ANLPG-ASGSV 275 (468)
T ss_pred cccccccccc-ccch-----hhh---hhhh----hhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH-hhcCC-CCcee
Confidence 6410000000 0000 000 0000 0000000000011222233322222122222201 11111 11111
Q ss_pred cHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 305 YAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 305 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+. +..+..|+++...|....+.+++.+++..+.+++.+|++.|+++.+
T Consensus 276 f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~ 323 (468)
T TIGR00788 276 FC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGV 323 (468)
T ss_pred EE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 11 2224589999999999999999999999999999999998887654
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-15 Score=134.12 Aligned_cols=151 Identities=17% Similarity=0.221 Sum_probs=116.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhh----hhchhHHHHHH-HHHHHHHHHHHHHhhHHH----------------
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTR----QFGRKLSMFFG-GILFLAGALLNGFAQAIW---------------- 134 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~---------------- 134 (355)
|.+..+.+++..+..+...+.+++.|+++| |+||||.++++ ....+++.++.+++++.+
T Consensus 35 g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i 114 (477)
T TIGR01301 35 GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAI 114 (477)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHH
Confidence 889999999999999999999999999999 59999998875 555666667777766542
Q ss_pred -HHHHHHHHhhhcccccccchhhhhhhcCCCCcc--cchhhHHHHHHHHHHHHHHHHHHHhh--cCC--------C--cc
Q 041698 135 -MLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFR--GALNIGFQLSITVGILIANVLNYFFN--KIH--------G--GW 199 (355)
Q Consensus 135 -~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~i~~~~~--~~~--------~--~~ 199 (355)
.++++-.+..++.....++..+++.|..|+++| +.+.++.....++|.++++.++++.. +.. + ..
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~ 194 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCA 194 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccc
Confidence 233333444557777888889999999998876 57899999999999999999998752 110 0 12
Q ss_pred chHHHHhhhHHHHHHHHHH-hccccCCh
Q 041698 200 GWRLSLGGAMVPALIITVG-SMILPDTP 226 (355)
Q Consensus 200 ~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (355)
+.|..|++.++..++..+. .+.++|.|
T Consensus 195 ~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 195 NLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 6788999887776665544 46678876
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.9e-16 Score=117.00 Aligned_cols=136 Identities=25% Similarity=0.368 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCC
Q 041698 86 TSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYR 165 (355)
Q Consensus 86 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~ 165 (355)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567888999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc-cccC
Q 041698 166 FRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM-ILPD 224 (355)
Q Consensus 166 ~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~e 224 (355)
+|++..++......+|..+++.+.+.+.+ ..+|++.+++.+...++..+..+ ..||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQ---FLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhc---ccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999886 56799999887777666555443 3454
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-15 Score=127.62 Aligned_cols=283 Identities=11% Similarity=0.106 Sum_probs=191.4
Q ss_pred CCCChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHH
Q 041698 17 GNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLS 96 (355)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~ 96 (355)
.|..+++|.+++++++-.+.+++.--.++++ ..+.+.+. + +.+..-|+..+|.+.+...
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i---~n~~~~~Y-----------------g-s~~~~~wlsmIym~v~vp~ 95 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPI---NNYVNSFY-----------------G-SSSAADWLSMIYMVVSVPF 95 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhH---HHHHHHHh-----------------c-chHHHHHHHHHHHHHHHHH
Confidence 4566677877777777667666655444433 34555543 6 7788889999999999999
Q ss_pred HHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh------hHHH--HHHHHHHHhhhcccccccchhhhhhhcCCCCccc
Q 041698 97 SLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA------QAIW--MLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRG 168 (355)
Q Consensus 97 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~--~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~ 168 (355)
.+.+-|+.|++|-|...+++..+.++++.+-..+ +.++ ..+.+..+.+.++-.+...-..+..-|++++||.
T Consensus 96 gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra 175 (480)
T KOG2563|consen 96 GFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRA 175 (480)
T ss_pred hhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhh
Confidence 9999999999999999999999999999887765 3455 7778999999988877777778888999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcCC---CccchHH--HHhhhHHHHHHHHHH-hccccCChhHHHhcCChHHHHHHH
Q 041698 169 ALNIGFQLSITVGILIANVLNYFFNKIH---GGWGWRL--SLGGAMVPALIITVG-SMILPDTPNSIIERGRHEEAREEL 242 (355)
Q Consensus 169 ~~~~~~~~~~~~G~~~~~~i~~~~~~~~---~~~~w~~--~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~ 242 (355)
.+..+-..+..+|.+++.++...+.... ++..|.. .|+....++.+.++. .+..++.|+.... .+
T Consensus 176 ~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps-----~s---- 246 (480)
T KOG2563|consen 176 IATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS-----AS---- 246 (480)
T ss_pred hhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc-----hh----
Confidence 9999999999999999998888876544 2345654 354444443333322 3334443321000 00
Q ss_pred HHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHH
Q 041698 243 RKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLM 322 (355)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 322 (355)
+..+.+..-.++.++.++.. + +....++.......++.....+...+...|++...+|.
T Consensus 247 -----------------~~~~~~~~f~~si~~~~~n~---~-F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ 305 (480)
T KOG2563|consen 247 -----------------QAALQDASFPKSIKSCFKNR---Q-FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGY 305 (480)
T ss_pred -----------------HhhhhcCcHHHHHHHHHcCc---c-HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccch
Confidence 00000011122233333332 2 33333333333333344444444334456787788999
Q ss_pred HHHHHHHHHHHHhhhhhheecccCCccc
Q 041698 323 SAVITGIVNVVATMVSIYGVDKWGRRFL 350 (355)
Q Consensus 323 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~ 350 (355)
......++++++..+.|.+.||.++-+.
T Consensus 306 ig~l~iv~Gmlga~~~gii~Dktk~fk~ 333 (480)
T KOG2563|consen 306 IGALMIVAGMLGALASGIIADKTKKFKL 333 (480)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 9999999999999999999999876443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-15 Score=131.72 Aligned_cols=244 Identities=16% Similarity=0.164 Sum_probs=162.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc-hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFG-RKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|+|..|+|.+.+...+...++++++|.++||.+ +||.+.+..++.++........++++.+++..++..+...+..|..
T Consensus 33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ 112 (400)
T PF03825_consen 33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLS 112 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHH
Confidence 899999999999999999999999999999986 6788888888888877777788899988888888888888888888
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHH-HHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcC
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVL-NYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERG 233 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 233 (355)
.++..+... +++.-.+-.....++|.+++... +..+....+..+....+++.+...++.....+.+|+.|.....+.
T Consensus 113 dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~ 190 (400)
T PF03825_consen 113 DSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKE 190 (400)
T ss_pred HHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccccccCC
Confidence 888887765 33444555555556665555432 222222111112234555555555444444556787762100000
Q ss_pred ChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhc
Q 041698 234 RHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTI 313 (355)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (355)
+ .++....+..+++|++.. ...... .+...........+.+.++++.
T Consensus 191 ~-----------------------------~~~~~~~~~~~llk~~~~---~~Fll~-~~l~~~~~~~~~~f~~~yl~~~ 237 (400)
T PF03825_consen 191 S-----------------------------VKKLLGLDALKLLKNPRF---LVFLLA-AFLIGISHAAYYTFFSIYLQEL 237 (400)
T ss_pred C-----------------------------cccccchHHHHHhcCccH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence 0 000001112234444332 222222 2233334556677778888887
Q ss_pred C-CCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 314 G-FGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 314 g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
| .+....+...++..++.++.-...+++.+|+|.|+++.++
T Consensus 238 gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a 279 (400)
T PF03825_consen 238 GGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLA 279 (400)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7 7778888888888999999999999999999999887654
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=138.11 Aligned_cols=242 Identities=13% Similarity=0.028 Sum_probs=149.0
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh----hchh-HHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHh
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQ----FGRK-LSMFFGGILFLAGALLNGFAQ------AIWMLIVGRLLL 143 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~ 143 (355)
+|++..++|.+.++.-+..++..|+.|+++|| +||| +.++++.+..+++.++....+ ..+.+++..++.
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~ 119 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL 119 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 39999999999999999999999999999998 7874 556677777777665544433 245666667777
Q ss_pred hhcccccccchhhhhhhcC-CCCcccchhhHHHHHHHHHHHHHHHHHHHhhcC----CCccchHHHHhhhHHHHHHHHHH
Q 041698 144 GFGIGFANQSVPLYLSEMA-PYRFRGALNIGFQLSITVGILIANVLNYFFNKI----HGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 144 G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~----~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
+.+......+..++..|+. ++++|.+..+....+..+|..+++.+...+... ....+|+..+.+.+++.++..+.
T Consensus 120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 7777777777888999988 458899888888888888877777654443321 11357888888777776555443
Q ss_pred -hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcc
Q 041698 219 -SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFT 297 (355)
Q Consensus 219 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
.+..+|.++. .+ + ++.+.++..+++++++..+......++.....
T Consensus 200 ~~~~~~e~~~~----~~--~--------------------------~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~-- 245 (444)
T PRK09669 200 CFFMTKERYTP----EV--D--------------------------NSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAV-- 245 (444)
T ss_pred HhCCeEEecCC----CC--c--------------------------CCCCHHHHHHHHhCCchHHHHHHHHHHHHHHH--
Confidence 3445554210 00 0 00001122333444333222222212111111
Q ss_pred cccchHhcHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 298 GINVIMFYAPVLFNTIGFG-SDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.......+++.+. .++ ++..+.......+..+++.++.++++||+|+|+.+..
T Consensus 246 --~~~~~~~~y~~~~-~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~ 299 (444)
T PRK09669 246 --VTRGGATLYYVNY-VLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKW 299 (444)
T ss_pred --HHHhhhhheeeee-ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 1111222222222 222 2333445555567788888999999999999987653
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-15 Score=134.49 Aligned_cols=244 Identities=14% Similarity=0.207 Sum_probs=168.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhh----hhchhHH-HHHHHHHHHHHHHHHHHh-h-------HHHHHHHHHHH
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTR----QFGRKLS-MFFGGILFLAGALLNGFA-Q-------AIWMLIVGRLL 142 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~Grr~~-l~~~~~~~~~~~~~~~~~-~-------~~~~l~~~r~l 142 (355)
|++....+.+..+.-+..++..|+.|.++| |+||||. ++++.+..+++.++.... + ....+.+..++
T Consensus 33 gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l 112 (428)
T PF13347_consen 33 GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYIL 112 (428)
T ss_pred CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999 8997655 456778888777766655 3 23445777777
Q ss_pred hhhcccccccchhhhhhhcCC-CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC---c-cchHHHHhhhHHHHHHHHH
Q 041698 143 LGFGIGFANQSVPLYLSEMAP-YRFRGALNIGFQLSITVGILIANVLNYFFNKIHG---G-WGWRLSLGGAMVPALIITV 217 (355)
Q Consensus 143 ~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~---~-~~w~~~~~~~~~~~~~~~~ 217 (355)
..++......+..++..|..+ +++|.+..+.-..+..+|.++...+...+.+..+ . .+|++...+.+++.++..+
T Consensus 113 ~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~ 192 (428)
T PF13347_consen 113 FDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFL 192 (428)
T ss_pred HHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhh
Confidence 788999999999999999997 5789999999999888988766666666654322 1 2799999888888776555
Q ss_pred Hh-ccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHc
Q 041698 218 GS-MILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQF 296 (355)
Q Consensus 218 ~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (355)
.. +..+|+++. . ++++++.+-++.++++++.+... ......+...
T Consensus 193 i~~~~~ke~~~~------~------------------------~~~~~~~~~~~~~~~~~~nr~~~----~l~~~~~~~~ 238 (428)
T PF13347_consen 193 ITFFFVKERSVE------V------------------------TEQEKKISLRDSLRSLFRNRPFR----ILLLAFFLQW 238 (428)
T ss_pred hhhheeeecccc------c------------------------cccccccccccchhhhcccchHH----HHHHHHHHHH
Confidence 44 556772110 0 00011111233344444433222 2222233333
Q ss_pred ccccchHhcHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 297 TGINVIMFYAPVLFNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 297 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
..........+++.+. .|.+ ...+.......++.+++.++.++++||+|+|+.+..+
T Consensus 239 ~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~ 296 (428)
T PF13347_consen 239 LAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIG 296 (428)
T ss_pred hhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhh
Confidence 3334444455555554 4444 5567777788999999999999999999999987654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-14 Score=129.76 Aligned_cols=136 Identities=17% Similarity=0.285 Sum_probs=113.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGALLNGFAQ-AIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
|++..+.+.+.+.+.....++++++|+++||+ ||||+++++.++.+++.++.+..+ +...+.++..+.+++.|...+.
T Consensus 41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~ 120 (493)
T PRK15462 41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSN 120 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccccccc
Confidence 89999999999999999999999999999999 999999999999999987776543 2233444444555666777788
Q ss_pred hhhhhhhcCCCC--cccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHH
Q 041698 154 VPLYLSEMAPYR--FRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALI 214 (355)
Q Consensus 154 ~~~~~~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~ 214 (355)
..++++|.+|++ +|..+.++.+.+.++|..++|.+.+++.+ +.||++.|.+.++..++
T Consensus 121 ~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~---~~Gw~~~F~iaaigm~l 180 (493)
T PRK15462 121 VSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE---EYSWAMGFGLAAVGMIA 180 (493)
T ss_pred HHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh---hhChHHHHHHHHHHHHH
Confidence 889999999875 68999999999999999999999999987 57899999876554333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-15 Score=137.80 Aligned_cols=246 Identities=12% Similarity=0.063 Sum_probs=153.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhh----hhch-hHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTR----QFGR-KLSMFFGGILFLAGALLNGFAQ------AIWMLIVGRLLLG 144 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G 144 (355)
|++...+|.+..+.-+.-++..|+.|+++| |+|| |+.++++.+..+++.++.-..+ .+..+++..++.+
T Consensus 38 Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~ 117 (473)
T PRK10429 38 GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWG 117 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 6698 5666777777777765553322 2445666667778
Q ss_pred hcccccccchhhhhhhcC-CCCcccchhhHHHHHHHHHHHHHHHHHHHhhc----CCCccchHHHHhhhHHHHHHHHHH-
Q 041698 145 FGIGFANQSVPLYLSEMA-PYRFRGALNIGFQLSITVGILIANVLNYFFNK----IHGGWGWRLSLGGAMVPALIITVG- 218 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~----~~~~~~w~~~~~~~~~~~~~~~~~- 218 (355)
++.....++..++..|.. ++++|.+..++-..+.++|..+.+.+...+.+ .....+|+....+.+++.++..+.
T Consensus 118 ~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~ 197 (473)
T PRK10429 118 MTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIIT 197 (473)
T ss_pred HHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999998 58999999888777777776665554443221 111236887777776665554433
Q ss_pred hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccC-chhHHHHHHHHHHHHHcc
Q 041698 219 SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKK-YRPHLTMAVLIPFFQQFT 297 (355)
Q Consensus 219 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 297 (355)
.+..+|.+... +.+ .+++++.++++.++.. ++++....+.. .+....
T Consensus 198 ~~~~~e~~~~~----~~~---------------------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~-~~~~~~ 245 (473)
T PRK10429 198 LRNVHEVYSSD----NQV---------------------------SAEGSHLTLKDIVALIYKNDQLSCLLGM-ALAYNI 245 (473)
T ss_pred HcCceecCCcc----ccc---------------------------cccccCCCHHHHHHHHhcCHHHHHHHHH-HHHHHH
Confidence 34466653110 000 0000112233333211 12222222222 222222
Q ss_pred cccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 298 GINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.......+.+++.+....++...+.......++.+++.++.+++.||+|+|+.+.+
T Consensus 246 ~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~ 301 (473)
T PRK10429 246 ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAG 301 (473)
T ss_pred HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 22333334444444332334455666666778899999999999999999988653
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.7e-14 Score=125.60 Aligned_cols=145 Identities=16% Similarity=0.155 Sum_probs=121.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|++..+.+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++.+++.+...+...
T Consensus 248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~ 327 (393)
T PRK15011 248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGM 327 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999998888888889999999999999999988887766666555555677888888899998888777777777
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
.+..|..|+ +|+++.++++....+|..+++.+++.+.+ ..+|+..|++.+++.++.++..++.||
T Consensus 328 ~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 328 LYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE---IWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888999875 58999999999999999999999999987 568999998888777776666666654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=136.79 Aligned_cols=142 Identities=15% Similarity=0.006 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSE 160 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~ 160 (355)
...+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++++++.|++.++.++...++++|
T Consensus 596 ~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE 675 (742)
T TIGR01299 596 MIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVE 675 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667789999999999999999999999999999999999999999888888899999999888889999999999
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCCh
Q 041698 161 MAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTP 226 (355)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~ 226 (355)
++|+++|++++++......+|.+++|.+++.+.. .+...+|++.+++.++..++.+++||+.
T Consensus 676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~----~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG----ITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999988765 2345677777777666666666779875
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.4e-14 Score=126.04 Aligned_cols=149 Identities=13% Similarity=0.184 Sum_probs=125.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHhhhccccccc
Q 041698 77 YDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ----AIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~ 152 (355)
++..+.+...++..++..++.++.|+++||+|||+++.++.++.+++..+..... +++.+++.+++.|++.+...+
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999999999988876666532 346677889999999998888
Q ss_pred chhhhhhhcCCCCcccchhhHHH-HHHHHHHHHHHHHHHHhhcCCCc---cchHHHHhhhHHHHHHHHHH-hccccCC
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQ-LSITVGILIANVLNYFFNKIHGG---WGWRLSLGGAMVPALIITVG-SMILPDT 225 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~i~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~-~~~~~e~ 225 (355)
....++.|++|+++|++..++.+ ...++|..++|.+++.+.+..+. .||+..|.+.+++.++..+. .++++|+
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 98999999999999999999997 67899999999999999875432 57999998887776665544 4556766
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=121.77 Aligned_cols=185 Identities=15% Similarity=0.217 Sum_probs=141.5
Q ss_pred HHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhh
Q 041698 24 LVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRV 103 (355)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l 103 (355)
|..+.++.+..++.+.+.+++.+. +-+|.++. |.+-+.+..|++.++..++.+++++.+|++
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s--~wpYl~~l----------------D~~A~~~ffG~viaa~slg~~i~~liF~~W 94 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTS--MWPYLQKL----------------DPTATATFFGLVIAASSLGHAIFSLIFGIW 94 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEee--cchhhhhc----------------CCCCCcchhhHHHHHHHHHHHhcchhhccc
Confidence 334455555567777777777666 66777664 226688999999999999999999999999
Q ss_pred hhhhch-hHHHHHHHHHHHHHHHHH-HHh---h-HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHH
Q 041698 104 TRQFGR-KLSMFFGGILFLAGALLN-GFA---Q-AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLS 177 (355)
Q Consensus 104 ~dr~Gr-r~~l~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 177 (355)
+.|.+. |+.++.+.++.++++++. +.. + .-+.++++|++.|+|.| .....-+|+++....++|.++++....+
T Consensus 95 s~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~ 173 (488)
T KOG2325|consen 95 SNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGG 173 (488)
T ss_pred ccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhH
Confidence 999986 899999999999999888 332 3 67899999999999976 4566789999998899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCC-------cc---chHHHHhhhHHHHHHHHHH-hccccCChh
Q 041698 178 ITVGILIANVLNYFFNKIHG-------GW---GWRLSLGGAMVPALIITVG-SMILPDTPN 227 (355)
Q Consensus 178 ~~~G~~~~~~i~~~~~~~~~-------~~---~w~~~~~~~~~~~~~~~~~-~~~~~e~~~ 227 (355)
..+|.++||.+...+..... +. -+..+-|+.++..++.++. .+++.|.++
T Consensus 174 ~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 174 FVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 99999999998887764321 01 1234445555555554444 355677764
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.4e-16 Score=141.87 Aligned_cols=268 Identities=14% Similarity=0.179 Sum_probs=3.0
Q ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh-------------------
Q 041698 71 TNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ------------------- 131 (355)
Q Consensus 71 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~------------------- 131 (355)
+++.|+++..+.|++.+.+-++..+..++..++.+|..|-|.+-+|.++.+++++++++-+
T Consensus 29 iErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~ 108 (539)
T PF03137_consen 29 IERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSS 108 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccc
Confidence 3566699999999999999999999999999999998888999999999999998876411
Q ss_pred -------------------------------HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHH
Q 041698 132 -------------------------------AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITV 180 (355)
Q Consensus 132 -------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 180 (355)
-+..+++++++.|+|....++...+|+-|..++++-+..+|+..+...+
T Consensus 109 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l 188 (539)
T PF03137_consen 109 ISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL 188 (539)
T ss_dssp -------------------------------------------SSS----------------------------------
T ss_pred cccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence 1367889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCC---------------cc----chHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHH
Q 041698 181 GILIANVLNYFFNKIHG---------------GW----GWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREE 241 (355)
Q Consensus 181 G~~~~~~i~~~~~~~~~---------------~~----~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 241 (355)
|.++|-++++.+.+... +. .|..-|.+.+...++..+.++++|++.....+..+.++..
T Consensus 189 GPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~-- 266 (539)
T PF03137_consen 189 GPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESS-- 266 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhh--
Confidence 99999999988775310 11 2555555556555555555666665532210000000000
Q ss_pred HHHHhCCCccHHHHHHHHHHHHHhhccccchhhhh---ccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCCC
Q 041698 242 LRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLL---QKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFGS 317 (355)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 317 (355)
+...++..+++ . .+++..+......++++ ++....+.+....+...........+..+.|.+++ +++.++
T Consensus 267 --~~~~~~~~~~~---~-~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sa 340 (539)
T PF03137_consen 267 --ERKEEDSDKDS---F-KDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSA 340 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --hcchhhhhhhc---c-cccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 00000000000 0 00000000111222222 23333445666666666666667777778887775 589998
Q ss_pred cHHHHHHHHHHH-HHHHHhhhhhheecccC
Q 041698 318 DASLMSAVITGI-VNVVATMVSIYGVDKWG 346 (355)
Q Consensus 318 ~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g 346 (355)
.++..+.....+ +..+|.+++|++.+|++
T Consensus 341 s~A~~l~G~v~ip~~~~G~llGG~ivkk~k 370 (539)
T PF03137_consen 341 SQASLLTGIVSIPGAALGILLGGYIVKKFK 370 (539)
T ss_dssp ------------------------------
T ss_pred HHHHHHHhhhhcchhheehheEEEEEEEec
Confidence 888887766655 67788999999999874
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=125.62 Aligned_cols=148 Identities=17% Similarity=0.203 Sum_probs=126.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+.+..+.+.+.++..++..++.++.|+++||+|||+.+.++.++.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999999999999999999999999999999999888888999999999999999998888878888
Q ss_pred hhhhhcCCCCcccchhhH-HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCCh
Q 041698 156 LYLSEMAPYRFRGALNIG-FQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTP 226 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (355)
.++.|.+|++.|+...+. ++....+|.++++.+.+.+.+ ..||+..|.+.+++.++..+.. +.+++++
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~---~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD---SIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH---hhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 899999999988877655 677788999999999999988 5689999998777766544443 3444443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=120.49 Aligned_cols=143 Identities=24% Similarity=0.327 Sum_probs=133.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKL-SMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|.+..+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+...+.++.+.+.+..++.|++.+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence 778999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (355)
..++.|..|+++|++.+++......+|..+++.+.+.+.+ ..+|+..+.+.+++.++..+..++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~---~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD---TGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCcchHHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999999999999999999987 568999999888887776665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-13 Score=122.67 Aligned_cols=142 Identities=18% Similarity=0.219 Sum_probs=122.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSE 160 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~ 160 (355)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.......|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666778889999999999999999999999999988888888888888888888899999999999888888888889
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCC
Q 041698 161 MAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDT 225 (355)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (355)
..|+++|+++.++++....+|..+++.+.+.+.+ ..+|+..|++.++..++..+..++++++
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS---WFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999998887 5689999998887777666555555443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-14 Score=117.68 Aligned_cols=257 Identities=14% Similarity=0.113 Sum_probs=161.2
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhhhcc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQ-FGRKLSMFFGGILFLAGALLNG---FAQAIWMLIVGRLLLGFGI 147 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~ 147 (355)
+.+.+++.++..++.+.|.....+-++++|++.|| +|.|..-++-+....++.++++ ..+.+|+++++|++-|+|.
T Consensus 71 k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGg 150 (459)
T KOG4686|consen 71 KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGG 150 (459)
T ss_pred hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCc
Confidence 55568888999999999999999999999999997 6888777777777778887776 4689999999999999998
Q ss_pred cccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh---ccccC
Q 041698 148 GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS---MILPD 224 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---~~~~e 224 (355)
-....+-..|..-|+..|+.+.++|+......+|..+--.+..++.+..+ -++-...-+.+.+... ..+..
T Consensus 151 ESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~------~~~~~~ghT~LG~~l~~~~~tc~~ 224 (459)
T KOG4686|consen 151 ESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG------RMFPGVGHTLLGLWLCFEVKTCKQ 224 (459)
T ss_pred hhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH------HhcccchHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999998776666555544111 0110000011100000 00000
Q ss_pred ChhHHHhcCChH-HHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchH
Q 041698 225 TPNSIIERGRHE-EAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIM 303 (355)
Q Consensus 225 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (355)
+--.....+-.+ ++++.+. .++....+.....+. ....++.+....++.......+..+.
T Consensus 225 slical~lg~~D~rAerilh-----------------~e~g~~Ge~pkLtdv--~~f~ppfw~~~iicv~yyva~fPFi~ 285 (459)
T KOG4686|consen 225 SLICALSLGLSDDRAERILH-----------------LEEGFLGEEPKLTDV--NTFYPPFWVLVIICVLYYVAWFPFIT 285 (459)
T ss_pred HHHHHHHhhhhhhHHHHHHh-----------------hhcCcccCCcccccc--cccCccHHHHHHHHHHHHHHHHHHhh
Confidence 000000011111 1111111 011000001111111 11223334433333332222222222
Q ss_pred hcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 304 FYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 304 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.-...+.+++|+|+..++.+.+.......+...+.|.++||+|++...+.
T Consensus 286 lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~ 335 (459)
T KOG4686|consen 286 LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVA 335 (459)
T ss_pred hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHH
Confidence 22234446699999999999999999999999999999999999876543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=118.87 Aligned_cols=191 Identities=9% Similarity=-0.016 Sum_probs=136.2
Q ss_pred HHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC----------
Q 041698 128 GFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG---------- 197 (355)
Q Consensus 128 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~---------- 197 (355)
+..++|+.++++-++.|.|.+..++..+.++++..+++++.+.+++.+..+++|..++|++++.+.....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 3567899999999999999999999999999999999999999999999999999999999998873210
Q ss_pred ---ccchHHHHhhhHHHHHHHHHHhcc--ccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccch
Q 041698 198 ---GWGWRLSLGGAMVPALIITVGSMI--LPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPW 272 (355)
Q Consensus 198 ---~~~w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (355)
..+|+++|++.+.+.++..+.+.+ +||.++ ++.++. .+ ++ ....
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~-----------------------~~-~~--~~~~ 133 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARV-----------------------SS-GD--TTQK 133 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc-----------------------cc-cc--ccch
Confidence 137999998666664444444333 354321 000000 00 00 0000
Q ss_pred hhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh---cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcc
Q 041698 273 KNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT---IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRF 349 (355)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~ 349 (355)
+..++ ++ .++...+..++..........|.+.++++ +|+++.+++...+....+.++|+++.+++.||+++|+
T Consensus 134 ~~~~~---~~-~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 134 TSAFQ---FT-HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred hhHHh---hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 11121 12 23334444555555566777788877754 5899999999999999999999999999999999888
Q ss_pred cccc
Q 041698 350 LFLE 353 (355)
Q Consensus 350 ~~~~ 353 (355)
.+.+
T Consensus 210 ~l~~ 213 (310)
T TIGR01272 210 YLAF 213 (310)
T ss_pred HHHH
Confidence 7643
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=121.53 Aligned_cols=137 Identities=12% Similarity=-0.014 Sum_probs=119.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAI--WMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~ 153 (355)
+.+..+.+.+.+.+.++..++.++.|+++||+|||+.+.++.++.+++.+...+.++. ..+.+..++.|++.+...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 315 (377)
T TIGR00890 236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISL 315 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhc
Confidence 7788889999999999999999999999999999999999999988888877776543 33456678888888888888
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHH
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALII 215 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~ 215 (355)
...++.|.+|+++|++..++......+|..++|.+.+.+.+ +.||++.|.+.+++.++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 316 FPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT---EIGFEYTFIVTGAFALTS 374 (377)
T ss_pred cHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh---hhchhhHHHHHHHHHHHh
Confidence 88899999999999999999999999999999999999887 568999998877665543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.8e-13 Score=122.13 Aligned_cols=240 Identities=11% Similarity=0.076 Sum_probs=149.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhh----hchhH-HHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQ----FGRKL-SMFFGGILFLAGALLNGFAQA------IWMLIVGRLLLG 144 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G 144 (355)
|++...+|.+..+.-+.-++.-|+.|.++|| +|||| .++++.+..+++.+++-..++ ...+.+.-++..
T Consensus 41 Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~ 120 (460)
T PRK11462 41 GIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLT 120 (460)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 68764 455666777776655443332 445666667778
Q ss_pred hcccccccchhhhhhhcCC-CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC----ccchHHHHhhhHHHHHHHHHHh
Q 041698 145 FGIGFANQSVPLYLSEMAP-YRFRGALNIGFQLSITVGILIANVLNYFFNKIHG----GWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~----~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
++......+..++..|..+ +++|++..++...+..+|..+++.+...+.+..+ ..+|+....+.+++.++.....
T Consensus 121 ~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~ 200 (460)
T PRK11462 121 LLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFC 200 (460)
T ss_pred HHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899999987 7889999999999999988888776554433211 2468877777666655544333
Q ss_pred -ccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHccc
Q 041698 220 -MILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTG 298 (355)
Q Consensus 220 -~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
...+|.++. +.+ +.+.++..+..++.+..+......++........
T Consensus 201 ~~~~kE~~~~-----~~~----------------------------~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~ 247 (460)
T PRK11462 201 FFTTKERVEA-----PPT----------------------------TTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVR 247 (460)
T ss_pred HhcceeccCC-----Ccc----------------------------CCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 334554310 000 0000111223332222111111111211111111
Q ss_pred ccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 299 INVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
.....++..+. .|. +...+.......++.+++.+++++++||+++|+.+.
T Consensus 248 ~~~~~y~~~y~---~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~ 297 (460)
T PRK11462 248 GGAMMYYVTWI---LGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFW 297 (460)
T ss_pred HhHhhhhhhhh---cCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 12222222222 222 233345666778888999999999999999987754
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.4e-13 Score=117.76 Aligned_cols=145 Identities=17% Similarity=0.227 Sum_probs=122.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+++.+.......++.++.|++.||+|||+.+.++.+...+......+.++.+.+.+.+++.|++.+...+...
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 310 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGM 310 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999988888778888999999999999999999888777666666666778888888899999999888888888
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
.++.|..|+ +++++.+++.....+|..++|.+++.+.+ ..+|+..|++.++..++..+...+++|
T Consensus 311 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 311 LYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE---RWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHheecC
Confidence 889998875 56799999999999999999999999887 567999999888777766666555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=125.91 Aligned_cols=262 Identities=15% Similarity=0.166 Sum_probs=186.5
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--------------------
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-------------------- 131 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------------- 131 (355)
.+.++++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|.++.+++++++++-+
T Consensus 124 ErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~ 203 (735)
T KOG3626|consen 124 ERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP 203 (735)
T ss_pred hhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence 555699999999999999999999999999999999999999999999999999987632
Q ss_pred -----------------------------H--HH-HHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHH
Q 041698 132 -----------------------------A--IW-MLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSIT 179 (355)
Q Consensus 132 -----------------------------~--~~-~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 179 (355)
+ ++ .++++.++.|+|....++...+|+-|...+++-+..+++......
T Consensus 204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~ 283 (735)
T KOG3626|consen 204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI 283 (735)
T ss_pred ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence 0 23 667889999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCc------------c----chHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHH
Q 041698 180 VGILIANVLNYFFNKIHGG------------W----GWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELR 243 (355)
Q Consensus 180 ~G~~~~~~i~~~~~~~~~~------------~----~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 243 (355)
+|.++|-++++++.+.... . -|..-|++.+.+.++..+.++++|...+...++ +..+ ..+
T Consensus 284 lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~-~~~~---~~~ 359 (735)
T KOG3626|consen 284 LGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKR-KRAR---DLH 359 (735)
T ss_pred hhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccccc-chhh---hhc
Confidence 9999999999998753211 1 256666677777777667777777654321111 0000 000
Q ss_pred HHhCCCccHHHHHHHHHHHHHhhccccchhhhh---ccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCCCcH
Q 041698 244 KVRGVNDVEEEFNDLVAASEASRQVEHPWKNLL---QKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFGSDA 319 (355)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 319 (355)
....+++ ..+......+..+++. ++....+++....+...+....+..+..|+|-+++ ++|.++..
T Consensus 360 ~~k~~~~----------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~ 429 (735)
T KOG3626|consen 360 VLKTESG----------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASL 429 (735)
T ss_pred ccccccc----------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHH
Confidence 0000000 0000000011122222 22223345666666666777777788888887775 58999999
Q ss_pred HHHHHHHHHH-HHHHHhhhhhheecccCC
Q 041698 320 SLMSAVITGI-VNVVATMVSIYGVDKWGR 347 (355)
Q Consensus 320 ~~~~~~~~~~-~~~~~~~~~g~l~d~~g~ 347 (355)
+..++....+ +..+|.+++|++++|+.-
T Consensus 430 An~l~G~i~vp~~~~Gi~lGG~iikkfkl 458 (735)
T KOG3626|consen 430 ANILTGSIGVPAAAVGIFLGGLIIKKFKL 458 (735)
T ss_pred HHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence 8888865554 467788999999998753
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.1e-13 Score=120.55 Aligned_cols=147 Identities=10% Similarity=0.055 Sum_probs=122.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+..++.|++.+...+...
T Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 330 (406)
T PRK11551 251 GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLY 330 (406)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHH
Confidence 88999999999999999999999999999999999999887777777777777777888788888888988877888888
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
++..|.+|+++|++..++......+|..++|.+.+.+.+.. .+|...++......++..+..+++.+
T Consensus 331 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 331 ALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG--RSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC--CchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999987632 25666666665555554444444433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-14 Score=126.57 Aligned_cols=244 Identities=17% Similarity=0.176 Sum_probs=138.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH--HHH-HHHHHh----hHH-HHHHHHHHHhhhcc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFL--AGA-LLNGFA----QAI-WMLIVGRLLLGFGI 147 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~--~~~-~~~~~~----~~~-~~l~~~r~l~G~~~ 147 (355)
|+|.+++|.+.++..+...+.+++.|.++||+|.||-+++...+.. .+. +...+. .|. ...+++-...|+..
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f 118 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF 118 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997665554433322 222 222222 222 22333334445555
Q ss_pred cccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc-cCCh
Q 041698 148 GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL-PDTP 226 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~e~~ 226 (355)
....++..++..++. ++.+.-.|-.....++|.+++..++|.+.+ .+-...|++....+++..++.++. |+.+
T Consensus 119 ~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~----i~p~~~fwi~s~~~~il~lll~~~~~~~~ 192 (412)
T PF01306_consen 119 NAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN----INPNIIFWIASAAAIILLLLLLLLKPDVP 192 (412)
T ss_dssp TTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHSS---SS
T ss_pred cccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee----eCccHHHHHHHHHHHHHHHHHHHcCCcCc
Confidence 555566666666654 334677778888899999999999998876 344667776665555544443333 3333
Q ss_pred hHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcH
Q 041698 227 NSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYA 306 (355)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
+.....+.. ..++++.+.+++++..+.++.+.......... ..+..+-...
T Consensus 193 ~~~~~~~~~----------------------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~-~~Y~vfdqqf 243 (412)
T PF01306_consen 193 PQAEVADAL----------------------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVA-AIYDVFDQQF 243 (412)
T ss_dssp SSS-SSTTS----------------------------SS------HHHHHHHTTSHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred hhhhhhccc----------------------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 211000000 00111222333333333334333332222211 2223333233
Q ss_pred HHHHHh----cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 307 PVLFNT----IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 307 ~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
+.+... .+.+....|.+.+...+..++...+..++.+|+|.|+.++++
T Consensus 244 ~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Llla 295 (412)
T PF01306_consen 244 PIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLA 295 (412)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHH
Confidence 444433 333445678888889999999999999999999999887754
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-12 Score=115.14 Aligned_cols=247 Identities=18% Similarity=0.203 Sum_probs=164.8
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHH-HHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhhhcccccccchh
Q 041698 79 SETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSM-FFGGILFLAGALLNGFA--QAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 79 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
.+..++..++..+..++..|+.|.++|+-|+||.+ .+...+..+++....+. ++++...+..++.-++.+.......
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999999866555 55555556666666663 4455566666777778888888999
Q ss_pred hhhhhcCCCCcc--------------------------cchhhHHHHHHHHHHHHHHHHHHHhhcCCC-----ccchHHH
Q 041698 156 LYLSEMAPYRFR--------------------------GALNIGFQLSITVGILIANVLNYFFNKIHG-----GWGWRLS 204 (355)
Q Consensus 156 ~~~~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~-----~~~w~~~ 204 (355)
+++.|..+++++ ++..+.-.....+|.++.-++...+....+ ..+-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999888 999999999999998888777666543221 2345887
Q ss_pred HhhhHHHHHH-HHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhH
Q 041698 205 LGGAMVPALI-ITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPH 283 (355)
Q Consensus 205 ~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (355)
+.+.++.-++ .+..++++||.|+....+....-..... ++-..++++.. +.+.
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~-----------------------~~l~~t~k~~~---~~~~ 282 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF-----------------------KRLWRTFKEIR---KLRQ 282 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH-----------------------HHHHHHHHHHH---hChH
Confidence 8777777544 4445667888875210000000000000 00011222221 1222
Q ss_pred HHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCc--cccc
Q 041698 284 LTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRR--FLFL 352 (355)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r--~~~~ 352 (355)
...+++.++...-+.+.+......+. ++.|++..+.........+.+++|+++.+++.||+|.| +.++
T Consensus 283 -~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~ 353 (477)
T PF11700_consen 283 -LFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLL 353 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 33334444443344455555555555 47999999999999999999999999999999999988 5544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-13 Score=119.35 Aligned_cols=135 Identities=15% Similarity=0.207 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhc
Q 041698 82 LTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEM 161 (355)
Q Consensus 82 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~ 161 (355)
.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|++.+...+.....+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45666778888899999999999999999999999999988888888888888888999999999988888888888999
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh
Q 041698 162 APYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 162 ~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
+|+++|++..++++....+|..++|.+.+.+.+ +.||+..|.+.+...++..+..
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT---SFGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987 5689999998887766655544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.8e-13 Score=120.51 Aligned_cols=242 Identities=10% Similarity=0.047 Sum_probs=135.8
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh----chhHHH-HHHHHHHHHHHHHH-HHh----h--HHHHHHHHHHH
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQF----GRKLSM-FFGGILFLAGALLN-GFA----Q--AIWMLIVGRLL 142 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~-~~~----~--~~~~l~~~r~l 142 (355)
+|++..++|.+.+...+..++..++.|+++||. ||||.. +++.+...+..++. ... + ..+.+.+..++
T Consensus 39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (448)
T PRK09848 39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG 118 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence 389999999999999999999999999999996 777654 55555555444432 211 1 23334555567
Q ss_pred hhhcccccccchhhhhhhcCCC-CcccchhhHHHHH-----HHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHH
Q 041698 143 LGFGIGFANQSVPLYLSEMAPY-RFRGALNIGFQLS-----ITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIIT 216 (355)
Q Consensus 143 ~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~-----~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 216 (355)
.+++.+...++..++..+..+. ++|.+..+.-..+ ..++..++|.++....... ..+|.....+.+++.++..
T Consensus 119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~-~~~~~~~~~~~~v~~~~~~ 197 (448)
T PRK09848 119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEM-VSVYHFWTIVLAIAGMVLY 197 (448)
T ss_pred HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-hhhHHHHHHHHHHHHHHHH
Confidence 7888888888777777776654 6787776655433 3455666676665432110 0122222222233322222
Q ss_pred -HHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHH
Q 041698 217 -VGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQ 295 (355)
Q Consensus 217 -~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (355)
+.....||++.. +. ++...+..++.+++++.... ..+..++.
T Consensus 198 ~~~~~~~~e~~~~---~~------------------------------~~~~~~~~~~~l~~n~~f~~----~~~~~~~~ 240 (448)
T PRK09848 198 FICFKSTRENVVR---IV------------------------------AQPSLKISLQTLKRNRPLFM----LCIGALCV 240 (448)
T ss_pred HHHHcCcEeccCC---Cc------------------------------cCCCHHHHHHHHhCCchHHH----HHHHHHHH
Confidence 223345554310 00 00000112334444333222 22212222
Q ss_pred cccccchHhcHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 296 FTGINVIMFYAPVLFNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
...........+++.++ .|.++...+.......++.+++.++.+++.||+++|+.+.+|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g 300 (448)
T PRK09848 241 LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIG 300 (448)
T ss_pred HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 22222333345555543 566655555545544677888999999999999999877643
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-11 Score=109.30 Aligned_cols=143 Identities=22% Similarity=0.337 Sum_probs=126.1
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhcccccc
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGALLNGFAQ--AIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~ 151 (355)
+|+|+++..-+.++|.--.=+...++|+++||+ |+|+++.++.++.++|.++.+.++ +...+.++-.+.++|.|..=
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 679999999999999888888999999999995 999999999999999999999884 78899999999999999999
Q ss_pred cchhhhhhhcCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 152 QSVPLYLSEMAPYRF--RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
+...+++.|.+|+++ |-...++++++.++|++++|++.+++.+ +++|...|...++-....++.++
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~---~~g~~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI---NYGWHVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH---hhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998644 5778889999999999999999999998 68899999877665555444433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-12 Score=113.71 Aligned_cols=138 Identities=11% Similarity=0.039 Sum_probs=123.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+.+.+...++..++.++.+++.||+|+|+.+.++.+..++..+..+++++.+.+++.++++|+..+...+...
T Consensus 236 g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~ 315 (382)
T TIGR00902 236 GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccchhhHHH-HHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH
Q 041698 156 LYLSEMAPYRFRGALNIGFQ-LSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
.++.+. |+++|++..++++ ...++|..+++.++|.+.+ +.++ ..|+..+.++++.++.
T Consensus 316 ~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~---~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 316 RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP---TLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccH-HHHHHHHHHHHHHHHH
Confidence 999998 8889999999876 5788999999999999998 4565 4566666665554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-12 Score=114.44 Aligned_cols=144 Identities=17% Similarity=0.040 Sum_probs=119.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|+|..+.+.+.+.+.++..++.++.|+++||++||+.+.....+..+...+....++.+.+.+..++.|++.+..++...
T Consensus 237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 316 (394)
T PRK03699 237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTII 316 (394)
T ss_pred CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999888877777766666777777777778889998888888888
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcccc
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILP 223 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 223 (355)
++..|..| +++++..+.......+|..++|.+.+.+.+ ..||+..+++.+++.++..+....++
T Consensus 317 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 317 TLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVA---HFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH---HhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 88888775 446778888888899999999999999988 56799998887777666655444443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=121.52 Aligned_cols=133 Identities=11% Similarity=-0.022 Sum_probs=106.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA--QAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
|++..+.+++.+...++..++.++.|+++||+|||+++..+.++..+..+..... .+.+.+.+..++.+.......+.
T Consensus 307 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (496)
T PRK03893 307 GYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGL 386 (496)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchh
Confidence 8899999999999999999999999999999999999988877766665444332 34444445555544433344567
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHH
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVP 211 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~ 211 (355)
...++.|.+|+++|++.+++......+|..++|.+++.+.+ ..+|+..+...+..
T Consensus 387 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~---~~g~~~~~~~~~~~ 441 (496)
T PRK03893 387 LPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ---RLDLGTALASLSFS 441 (496)
T ss_pred hHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc---cCChHHHHHHHHHH
Confidence 77889999999999999999999999999999999999988 56788777654443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-12 Score=114.70 Aligned_cols=137 Identities=20% Similarity=0.118 Sum_probs=120.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSE 160 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~ 160 (355)
..+.+.++..++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+.....+.+
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 34666677788889999999999999999999999998888888877778888889999999999999999999999999
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 161 MAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
..|+++|++.+++......+|..++|.+++.+.+ ..+|+..|++.++..++..+..+
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~---~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA---NYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh---hcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 56899999988887776655543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-12 Score=106.06 Aligned_cols=233 Identities=13% Similarity=0.164 Sum_probs=147.3
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
+|++..|++.+....+...++..++.|.++||+|||+.-+...++.+++++ +-..++++.++++|++.|++.+..+.+-
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~F 142 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAF 142 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 399999999999999999999999999999999999999999999999886 4456889999999999999999998888
Q ss_pred hhhhh-hcC----CCCcccchhhHHH-HHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc-cccCChh
Q 041698 155 PLYLS-EMA----PYRFRGALNIGFQ-LSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM-ILPDTPN 227 (355)
Q Consensus 155 ~~~~~-~~~----~~~~r~~~~~~~~-~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~e~~~ 227 (355)
.+++. |.- |++..+...+... ...++-.+.+.+++..+.+..+ .|-..+|.......++..+.+. ..+|.+.
T Consensus 143 EsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 143 ESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-FGPVAPFDAAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence 88764 332 2222222222222 2233344555556655554222 2346677776666555544443 3455532
Q ss_pred HHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHH
Q 041698 228 SIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAP 307 (355)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
....+ .+. .+.-+..++.+.+ .++.+.......+.....+..+..|.|
T Consensus 222 ~~~~~---~~~--------------------------~~~~~~a~~~i~~---d~ril~LG~~qslFE~smy~FVflWtP 269 (354)
T PF05631_consen 222 DTSSS---SSL--------------------------SGSFREAWRAILS---DPRILLLGLIQSLFEGSMYLFVFLWTP 269 (354)
T ss_pred Ccccc---cch--------------------------HHHHHHHHHHHHc---CchhHHHHHHHHHHHHHHHHheeeeec
Confidence 10000 000 0000111222222 234455556666666665666667777
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheec
Q 041698 308 VLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVD 343 (355)
Q Consensus 308 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 343 (355)
.+..+ -.....|++++.+.++.++|+.+..++..
T Consensus 270 aL~~~--~~~~P~GlIFssFM~a~MlGS~lf~~l~s 303 (354)
T PF05631_consen 270 ALDPD--DEELPLGLIFSSFMVAMMLGSSLFSRLLS 303 (354)
T ss_pred eecCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 66521 12334678888888888888877755443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=119.30 Aligned_cols=139 Identities=9% Similarity=0.032 Sum_probs=115.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhh--hchhHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQ--FGRKLSMFF--GGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr--~Grr~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|++..+.+++.++..++..+++++.|+++|| +++|+...+ +.++.+++.++....++++.+++.+++.|++.+...
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~ 351 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVG 351 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHH
Confidence 8899999999999999999999999999997 344443333 344444555566678889999999999999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIIT 216 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 216 (355)
+...+++.|.+|++++++..+++.....+|..++|.+++.+.+..+ +|+..|++.++..++..
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--~~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--NYKYIFYASGSIVVSAG 414 (455)
T ss_pred HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--CcchHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999887332 58888888777655443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.6e-12 Score=112.28 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=114.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+++.+...++..+++++.|+++||+|+|+++..+..+..++.+... + ........++.|++.....|...
T Consensus 231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~ 307 (381)
T PRK03633 231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAM 307 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHH
Confidence 78888999999999999999999999999999999999888888777665443 2 23344567777887777788888
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (355)
..+.|..|+++++...+......++|..++|.+++.+.+ +.+|++.|.+.+.+.++..+..++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~---~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ---NYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCccHHHHHHHHHHHHHHHHHHh
Confidence 999999988888888888888999999999999999988 567999998877776655544443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=112.95 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=109.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH---h-hHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF---A-QAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.+......+.....+...++.++.|+++||+|||++++.+.++..++.+.... . ++.+.+++..++.+++.+...
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVV 361 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 667766655666666777888999999999999999998887766655443322 1 234455556677788888888
Q ss_pred cchhhhhhhcCCCCcccchhhHHH-HHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCC
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQ-LSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDT 225 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (355)
+...+++.|.+|++.|+...++.. .+..+|..++|.+.+.+.+..+ .+|+..+...++..++..+..+.++|+
T Consensus 362 ~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 362 CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 888899999999999988888754 4455899999999999876432 358888877777666666655556654
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=106.79 Aligned_cols=249 Identities=13% Similarity=0.145 Sum_probs=158.6
Q ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc-----hhHHHH-HHHHHHHHHHHHHHHh-----h--------
Q 041698 71 TNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFG-----RKLSMF-FGGILFLAGALLNGFA-----Q-------- 131 (355)
Q Consensus 71 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-----rr~~l~-~~~~~~~~~~~~~~~~-----~-------- 131 (355)
|..|++++....+.+.+.+++.+. ..+.+|+.||+.+ ||..++ .|.++...+..+.+++ .
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 355679999999999999888776 5899999999998 886554 4555555555554442 2
Q ss_pred H-H--HHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhh
Q 041698 132 A-I--WMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGA 208 (355)
Q Consensus 132 ~-~--~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~ 208 (355)
. . ....+...+.|++.+...++..++++|..|+++|+++.++......+|.+++..+.+.+.+......-.-++...
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV 164 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence 1 2 234456678899999999999999999999999999999999999999999999999887632111111122222
Q ss_pred HHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHH
Q 041698 209 MVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAV 288 (355)
Q Consensus 209 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (355)
++++++..+...+=.|+++....+. .++++...+..++++...+..++++...
T Consensus 165 a~i~~~l~~ia~wg~E~r~~~~~~~---------------------------~~~~~~~f~~a~~~~~~~~~a~~f~~fl 217 (403)
T PF03209_consen 165 ALIALLLNLIALWGQEPRRSRRAAA---------------------------AERPRPPFREAWRQVWASPQARRFFVFL 217 (403)
T ss_pred HHHHHHHHHHHHHhcccCCcccccC---------------------------CCCCCccHHHHHHHHHhCCChhHHHHHH
Confidence 3333222223333344332111000 0001111123455555555555555554
Q ss_pred HHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheec-ccCCccc
Q 041698 289 LIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVD-KWGRRFL 350 (355)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~r~~ 350 (355)
++..+..+. --...-||=-+.+|++..++..+....+.+.++|..+.+++.. |.++++.
T Consensus 218 ~l~t~a~~~---QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~ 277 (403)
T PF03209_consen 218 FLGTLAFFM---QDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRT 277 (403)
T ss_pred HHHHHHHHh---hHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 443332211 1111223333558999999999999999999999999997766 5555554
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-12 Score=114.58 Aligned_cols=148 Identities=16% Similarity=0.103 Sum_probs=125.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...++.++.|++.+...+...
T Consensus 255 g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 334 (417)
T PRK10489 255 QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQY 334 (417)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999998888888888888888888888888888888899999998887777888
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHH-HHhccccCCh
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIIT-VGSMILPDTP 226 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~e~~ 226 (355)
+++.|..|++.|+++.+++.....+|..+++.+.+.+.+ ..+++..+...++..++.. +....++|.+
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 335 TLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA---MMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH---HhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 899999999999999999999999999999999999988 4567777776666544433 3345556654
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-12 Score=113.50 Aligned_cols=246 Identities=16% Similarity=0.138 Sum_probs=166.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhh----hchh-HHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQ----FGRK-LSMFFGGILFLAGALLNGFAQ------AIWMLIVGRLLLG 144 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G 144 (355)
|++...+|.+..+-=+--++.-|+.|.++|| +||+ +.++++.+..++.+.++-.++ +....++...+.+
T Consensus 44 Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~ 123 (467)
T COG2211 44 GLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLG 123 (467)
T ss_pred CCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999996 7864 666777788888887776665 3566677788889
Q ss_pred hcccccccchhhhhhhcCC-CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC----ccchHHHHhhhHHHHHHHHHHh
Q 041698 145 FGIGFANQSVPLYLSEMAP-YRFRGALNIGFQLSITVGILIANVLNYFFNKIHG----GWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~----~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
++......+..++..|+.+ ++||.+..+.-..+.++|.++...+...+....+ ..||+....+.+++.++..+..
T Consensus 124 l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~ 203 (467)
T COG2211 124 LGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFC 203 (467)
T ss_pred HHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999998888899998875 6889999999999988887766665555543221 3588888888887766655544
Q ss_pred -ccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhc-cCchhHHHHHHHHHHHHHcc
Q 041698 220 -MILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQ-KKYRPHLTMAVLIPFFQQFT 297 (355)
Q Consensus 220 -~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 297 (355)
+.++|.+... .+.++..+.++++.+. ..++++ +...++..++...
T Consensus 204 ~~~v~ER~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~Nrp-~~~~l~~~l~~~~ 250 (467)
T COG2211 204 FFNVKERVVET--------------------------------QPTKTGVKLKLKDSFLLIFKNRP-LLLLLLMNLLLFI 250 (467)
T ss_pred HHHhhcccCcc--------------------------------ccCcccccccHHHHHHHHHccch-HHHHHHHHHHHHH
Confidence 4466654200 0000011222332221 111122 2222223333333
Q ss_pred cccchHhcHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 298 GINVIMFYAPVLFN-TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 298 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
..+.......++.+ ..|.++............+.+++.++..++.+|+|+|+++.++
T Consensus 251 ~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~ 308 (467)
T COG2211 251 AFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIG 308 (467)
T ss_pred HHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHH
Confidence 33333434444443 2566667777777777888888899999999999999988654
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-11 Score=109.24 Aligned_cols=140 Identities=19% Similarity=0.130 Sum_probs=114.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGA-LLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|.|..+.+++.+...++..+++++.|+++||+|||+.. .+..+..++. ......++.+.++++.++.|++.+...+..
T Consensus 237 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 315 (390)
T PRK03545 237 GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAM 315 (390)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHH
Confidence 88899999999999999999999999999999988754 4444444443 334456778888889999999887777777
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
...+.+..| ++|+++++++.....+|..+||++++.+.+ +.+++..|++.+.+.++.++...
T Consensus 316 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~---~~g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 316 QVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL---HLGLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccChhHHHHHHHHHHHHHHHHHH
Confidence 788888876 678999999999999999999999999998 67899999988887776655543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=114.11 Aligned_cols=145 Identities=15% Similarity=0.036 Sum_probs=108.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALL--NGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
|+|..+.++..+...++..++.+++|+++||+|||+.+.....+..++... ....++.+.+.+.+++.|+........
T Consensus 290 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 369 (467)
T PRK09556 290 GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLL 369 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHH
Confidence 889999999999999999999999999999999998876655444443322 223456666778888888654333333
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHH-HHHHHHHHHHHhhcC-C--------CccchHHHHhhhHHHHHHHHHHhc
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITV-GILIANVLNYFFNKI-H--------GGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~~~~~~~-~--------~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
......|.+|++.|+++.++.+....+ |..++|.+.|.+.+. . ...+|+..|++..+..++..+..+
T Consensus 370 ~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 370 IGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 345677999999999999999988886 779999999999871 0 024699999877666665544443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=114.40 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=106.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH--HHHHH--hhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGA--LLNGF--AQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+.+..++.|++.+...
T Consensus 251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 330 (394)
T TIGR00883 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYT 330 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999999998876655544433 22222 2466777788888999888899
Q ss_pred cchhhhhhhcCCCCcccchhhH-HHHHHHHHHHHHHHHHHHhhcCCCccc-hHHHHhhhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIG-FQLSITVGILIANVLNYFFNKIHGGWG-WRLSLGGAMVP 211 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~~~~~~~~~~~~-w~~~~~~~~~~ 211 (355)
+...+++.|.+|+++|+++.++ ...+..+|..++|.+++.+.+. .+ |+..++...+.
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~---~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM---TGDWYAIGYYLAAL 389 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH---cCcchhHHHHHHHH
Confidence 9999999999999999999997 4566678999999999999873 44 77766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=111.26 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=103.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhH--HHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKL--SMF------FGGILFLAGALLNGFAQAIWMLIVGRLLLGFGI 147 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~--~l~------~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 147 (355)
|.+..+.+++.+...++..++.++.|+++||+|||+ ... .+.++..+........++.+..+....+.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (399)
T TIGR00893 247 GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGL 326 (399)
T ss_pred cccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhch
Confidence 788899999999999999999999999999999996 111 111111111111222334454554555555554
Q ss_pred cccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccc-hHHHHhhhHHHHHHHHHH
Q 041698 148 GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWG-WRLSLGGAMVPALIITVG 218 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~ 218 (355)
+ ..+....++.|..|+++|++..++......+|..++|.+.+.+.+ ..+ |+..|++.++..++..+.
T Consensus 327 ~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~---~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 327 G-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA---TTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred h-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc---CCCchhHHHHHHHHHHHHHHHH
Confidence 4 788899999999999999999999999999999999999999987 455 888888777766655443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-11 Score=108.22 Aligned_cols=147 Identities=14% Similarity=0.058 Sum_probs=113.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-AIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+ +...+ .-++.|++.+...+..
T Consensus 236 g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~ 313 (393)
T PRK09705 236 GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLC 313 (393)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHH
Confidence 88999999999999999999999999999999999999998888777766554322 22222 2245688877777877
Q ss_pred hhhhhhcCC-CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCCh
Q 041698 155 PLYLSEMAP-YRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTP 226 (355)
Q Consensus 155 ~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (355)
.....+..+ +++|++..++.+....++..++|.+.+++.+..+ +|...|.+.+...++...+ ..+.||++
T Consensus 314 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 314 LLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--NYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 766667764 5778999999999999999999999999988544 4777777766665554444 34567765
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=112.87 Aligned_cols=148 Identities=13% Similarity=0.010 Sum_probs=114.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-----h------HHHHHHHHHHHhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-----Q------AIWMLIVGRLLLG 144 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~------~~~~l~~~r~l~G 144 (355)
|++..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.++. + +...+....++.+
T Consensus 315 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (481)
T TIGR00879 315 GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIA 394 (481)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHH
Confidence 7888888999999999999999999999999999999999988888877666521 1 2333333333333
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-cccc
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILP 223 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~ 223 (355)
.......+....++.|.+|+++|++++++.....++|.+++|.+.+.+.+ +.+|++.|++.++++++..+.. ++.|
T Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 395 FFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE---SIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCccceehhHHHHHHHHHHHHheecc
Confidence 33333446667778999999999999999999999999999999998877 4679988888877766655554 4556
Q ss_pred CCh
Q 041698 224 DTP 226 (355)
Q Consensus 224 e~~ 226 (355)
|++
T Consensus 472 ~~~ 474 (481)
T TIGR00879 472 ETK 474 (481)
T ss_pred cCC
Confidence 654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.2e-11 Score=110.51 Aligned_cols=151 Identities=15% Similarity=0.081 Sum_probs=109.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--H-H-HHHHHHHHHhhhcccc-c
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ--A-I-WMLIVGRLLLGFGIGF-A 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~-~-~~l~~~r~l~G~~~g~-~ 150 (355)
|.+.....+......++..++.++.|+++||+|||+.++.+.++.+++.++.+... + . .....+.++.+.+.+. .
T Consensus 302 g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (479)
T PRK10077 302 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 381 (479)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccc
Confidence 77777777777788889999999999999999999999999999888887765432 1 1 1222333444444333 2
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc---CCCccchHHHHhhhHHHHHHHHHHh-ccccCCh
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK---IHGGWGWRLSLGGAMVPALIITVGS-MILPDTP 226 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~---~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (355)
.+....++.|.+|+++|++++++......+|..+++.+...+.+ ..++.+|++.|++.+++.++..+.. ++.||++
T Consensus 382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 36678999999999999999999999999999888766654441 0114678888888777666555544 4567764
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=111.24 Aligned_cols=129 Identities=12% Similarity=0.034 Sum_probs=107.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGAL-LNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|++..+.+++.+...++..++.++.|+++||+|||+.+.++.++..+..+ .....++.+.+.+..++.|+..+...+..
T Consensus 270 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (405)
T TIGR00891 270 GLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGIL 349 (405)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhH
Confidence 88999999999999999999999999999999999999888776543332 33344566777777777787777777888
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccc-hHHHHhh
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWG-WRLSLGG 207 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~-w~~~~~~ 207 (355)
..++.|.+|+++|++++++.+....+|..++|++.+.+.+. .| |+..+..
T Consensus 350 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~---~g~~~~~~~~ 400 (405)
T TIGR00891 350 PKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR---LDEYGTALAS 400 (405)
T ss_pred HHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh---ccccchhHHh
Confidence 89999999999999999999999999999999999999883 44 6655543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.5e-11 Score=107.12 Aligned_cols=141 Identities=11% Similarity=0.109 Sum_probs=108.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH-HHHHHHHHHHHHHHH-----hhHHHHHHHHHHHhhhcccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMF-FGGILFLAGALLNGF-----AQAIWMLIVGRLLLGFGIGF 149 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~ 149 (355)
|++..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.... .++.+.+++..++.|++.+.
T Consensus 253 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 332 (402)
T TIGR00897 253 GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAG 332 (402)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999988764 333333443333322 24567777888888988776
Q ss_pred cccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc
Q 041698 150 ANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (355)
..+ ....+.|.. +++|+++.++.+....+|..++|.+++.+.+ ..||+..+++.++..++..+...+
T Consensus 333 ~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~---~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 333 YVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG---FFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcchHHHHHHHHHHHHHHHHHHHH
Confidence 544 445667765 4689999999999999999999999999988 567999998888776665554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.1e-11 Score=101.80 Aligned_cols=248 Identities=15% Similarity=0.146 Sum_probs=163.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchh-HHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHhhhcccccccc
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRK-LSMFFGGILFLAGALLNGFAQA---IWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr-~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~ 153 (355)
+.+..+...++..+..++-+|+.|.++|+.|+| +.+-....+..++.++..++++ ++..++...+..++.......
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 456788888999999999999999999999955 5555666666666666666654 455566668888888889999
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHh--hc-------------CCCccchHHHHhhhHHHHHHHHH-
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFF--NK-------------IHGGWGWRLSLGGAMVPALIITV- 217 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~--~~-------------~~~~~~w~~~~~~~~~~~~~~~~- 217 (355)
..+++.+..++++-++..++......+|..+.-++.... .. ..+...=|..+.+.++.-++..+
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 999999999998889888887777777776655443111 11 01134567778777777555443
Q ss_pred HhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcc
Q 041698 218 GSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFT 297 (355)
Q Consensus 218 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
.++.+++.++-. ....+.. . ..-++.+.++++..+++. .+......++.+ -
T Consensus 216 m~~~v~~~~~~~---~~~~~~l------------~----------~g~k~L~~t~k~i~~~~~---i~~FLiA~~~~~-D 266 (438)
T COG2270 216 MILNVHDAEKIS---SPPPTAL------------R----------NGFKELKSTFKEIRGRKN---LVLFLIARFFYI-D 266 (438)
T ss_pred HHhccccccccc---ccchHHH------------H----------HHHHHHHHHHHHHhcccc---hHHHHHHHHHHH-h
Confidence 445566654310 0000000 0 000111233444443332 222333333333 3
Q ss_pred cccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 298 GINVIMFYAPVLF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 298 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
+.+........+- .++|++..+...+.....+.+++|+++.|++.||+|.|++++.+
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~ 324 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIG 324 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHH
Confidence 3444444555554 47999999999999999999999999999999999999877653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-11 Score=107.99 Aligned_cols=152 Identities=16% Similarity=0.195 Sum_probs=131.1
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchh--HHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHH
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRK--LSMFFGGILFLAGALLNGF--------AQAIWMLIVGRL 141 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~ 141 (355)
++++|++..+...+.-...+..++|++++|++.||+|.| ++++++.+++.+..+...+ .++.+.+.+.-+
T Consensus 309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~ 388 (477)
T PF11700_consen 309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV 388 (477)
T ss_pred HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence 345599999999999999999999999999999999999 8999998888777766666 678888999999
Q ss_pred HhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc
Q 041698 142 LLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 142 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (355)
+.|+..|..++..-++.+|..|+++.+...|++....-....+||++.+.+.+.++ +-|+.+....++.++.+++.++
T Consensus 389 ~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 389 LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999998765 4666666666666666666666
Q ss_pred ccCC
Q 041698 222 LPDT 225 (355)
Q Consensus 222 ~~e~ 225 (355)
++++
T Consensus 467 v~~~ 470 (477)
T PF11700_consen 467 VDVE 470 (477)
T ss_pred ccch
Confidence 6544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=103.83 Aligned_cols=136 Identities=20% Similarity=0.122 Sum_probs=114.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.+..++.++.+.+++..++.|++.+...+...
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 315 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88989999999999999999999999999999999999999999998888888899999999999999999998889999
Q ss_pred hhhhhcCCCCcccchhhHHH-HHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHH
Q 041698 156 LYLSEMAPYRFRGALNIGFQ-LSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIIT 216 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 216 (355)
.++.+. +++++++..+... ....+|..++|.++|.+.+ ..++ ..++..++++++.+
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~---~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 316 RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ---HLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccH-HHHHHHHHHHHHHH
Confidence 998887 4556788888775 5567888999999999988 4456 35555555554433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=108.10 Aligned_cols=141 Identities=16% Similarity=0.085 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHhhhcccccccchhhhhhhcC
Q 041698 87 SSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQA----IWMLIVGRLLLGFGIGFANQSVPLYLSEMA 162 (355)
Q Consensus 87 s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~ 162 (355)
....++..++.++.++++||+|||+.++++.++.+++.++.++..+ ...+...-+...++.....+....+.+|.+
T Consensus 342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 3445566778899999999999999999888887777666554321 111111111112222234456667789999
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC-------ccchHHHHhhhHHHHHHHHHHhccccCChh
Q 041698 163 PYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG-------GWGWRLSLGGAMVPALIITVGSMILPDTPN 227 (355)
Q Consensus 163 ~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~-------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~ 227 (355)
|++.|+++.++......+|.+++|.+.+.+.+..+ +.++...|++.++..++..+..+++||++.
T Consensus 422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~ 493 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKG 493 (502)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence 99999999999999999999999999998876321 134556677777666665555567798753
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=107.43 Aligned_cols=139 Identities=19% Similarity=0.309 Sum_probs=126.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+....|++.+++.+|..+|+++.+++.+|+++++.+..+.++.+++.+..+++++.+..++..++.|++.....+...
T Consensus 250 ~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~ 329 (524)
T PF05977_consen 250 GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLN 329 (524)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV 217 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 217 (355)
+.+.+..|++.|||+++++.+....+..+|..+.|.+.+ ..|-+..+.+.++..++..+
T Consensus 330 t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~---~~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 330 TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD---HFGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 56788877766655444333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.4e-11 Score=109.53 Aligned_cols=119 Identities=11% Similarity=0.073 Sum_probs=103.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA---QAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
|.+..+.++......++..++.++.|++.||+|||+++..+.++.+++..+..+. ++.+.+.+..++.|++.+...+
T Consensus 293 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (471)
T PRK10504 293 GFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFS 372 (471)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999988888877666653 3344455667788888888888
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
....+..+..|+++|+...++.+....+|..+|+.+++.+.+
T Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999988765
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-10 Score=103.67 Aligned_cols=125 Identities=12% Similarity=0.034 Sum_probs=94.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ--AIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.++.++..+.....+ +...+.+..+..+.+..+..+.
T Consensus 262 g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (426)
T PRK12307 262 GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGL 341 (426)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHH
Confidence 77888899999999999999999999999999999999988877766655444332 2222222222222232333455
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHH
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRL 203 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~ 203 (355)
.+.++.|.+|+++|++++++......+|..++|.+.+.+.+ ..++..
T Consensus 342 ~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~---~~g~~~ 388 (426)
T PRK12307 342 VPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI---TMGLGA 388 (426)
T ss_pred HHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH---cccHHH
Confidence 66788999999999999999999999999999999999987 445544
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.5e-10 Score=98.39 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=120.2
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhccccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-QAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
..|+|.+.++++.-.+.++..+|+++.|+++|| +.|+.+.....+.++..+...+. ++.+..++.-++.|++.+....
T Consensus 241 v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~ 319 (394)
T COG2814 241 VAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQ 319 (394)
T ss_pred ccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhh
Confidence 338999999999999999999999999999999 99999999988888877776654 5566677777778888777666
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (355)
.....+++ ..++.+..+.+++....++|..+|..+++.+.+ ++|+....++.++..++.+...+.
T Consensus 320 ~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~---~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 320 GLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLD---ALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhchHHHHHHHHHHHHHHHHHHHH
Confidence 66666667 446778999999999999999999999999998 688999999988887776665543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-10 Score=105.45 Aligned_cols=146 Identities=11% Similarity=0.115 Sum_probs=113.7
Q ss_pred cCCcchhHHHHH-HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHH---HHh-hHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTS-SLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLN---GFA-QAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s-~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~G~~~g~~ 150 (355)
|++..+.+++.. ...++..++.++.|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-++..+..|..
T Consensus 254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~ 333 (491)
T PRK11010 254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG 333 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 899999999974 6668999999999999999999998877766655544332 232 34555555566655555555
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
.+...++..+..+++.+++..++.+...++|..+++.++|.+.+ ..||+..|.+.++.+++..+....+++
T Consensus 334 ~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~---~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 334 TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE---AHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66678888899999999999999999999999999889999988 568999998888887776666555544
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-10 Score=103.52 Aligned_cols=146 Identities=12% Similarity=-0.020 Sum_probs=93.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH--H--hhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG--F--AQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.+..+.+...+...++..+++++.|+++||+|||+.+.++.++.++...... . .++....+..-.+.+...+...
T Consensus 275 g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
T PRK10406 275 GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYT 354 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 78888889988888888899999999999999999988777665444332221 1 1222222222222223333334
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHH-HHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITV-GILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
+....+..|++|++.|+.++++.+...++ .....|.+.+.+.. .+ .|...++..++..++..+..+++++
T Consensus 355 ~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~g--~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 355 SISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-IG--METAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-hC--CCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667889999999999999998765443 34457777775543 11 3555555555555555444444433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=102.70 Aligned_cols=119 Identities=18% Similarity=0.119 Sum_probs=110.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQA-IWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|.+..+.+.+.+...++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ .+.+.+..++.|++.+...+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 322 (365)
T TIGR00900 243 GRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQ 322 (365)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999888888888887777774 8888899999999999999999
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.+++.|..|+++|++..++......+|..++|.+++.+.+
T Consensus 323 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 323 GTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=105.22 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=98.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh--chhHHH-HHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF--GRKLSM-FFGGILFLAGALLNGF--AQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|++..+.++....+.++..++.++.|+++||+ |||+.. .....+..++.+...+ .++.+..+++.++.|.+....
T Consensus 285 g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 364 (452)
T PRK11273 285 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGP 364 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhH
Confidence 78888999999999999999999999999999 555432 2222333333332222 234444445555555543322
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHH-HHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGIL-IANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
......+..|.+|+++|++++++.+....+|.. ++|.+.+.+.+ ..||+..|++.++.+++.++...
T Consensus 365 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~---~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 365 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD---FFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH---HhcchHHHHHHHHHHHHHHHHHH
Confidence 333345677999999999999999988888765 47999999987 56799999887777666555443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-10 Score=102.51 Aligned_cols=140 Identities=15% Similarity=0.196 Sum_probs=118.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+.+....+.+.+...+...++.+..|++.||+|||+.+.++.++.++...+...+++.+.+++.++++|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788899999999999999999999999999999999998888888878888999999999999998776666666
Q ss_pred hhhhhcCCCCcccchhhH-HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH
Q 041698 156 LYLSEMAPYRFRGALNIG-FQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
.+..+..+++.++...+. .+....+|..+++.+++++.+ ..||+..|.+.+++.++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~---~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD---SIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH---hcccHHHHHHHHHHHHHHHHH
Confidence 777888887777776665 678899999999999999988 568999999888776665443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=104.43 Aligned_cols=239 Identities=16% Similarity=0.201 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh--cccccccchhhhhhhcCCCC
Q 041698 88 SLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGF--GIGFANQSVPLYLSEMAPYR 165 (355)
Q Consensus 88 ~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~--~~g~~~~~~~~~~~~~~~~~ 165 (355)
...+...+.++..|.++||+|||..+.+......+..++..+.. +|.++ +.++ +.+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 34677789999999999999999999999999999888877766 44433 4444 23456778889999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhcCChHHHHHHHHH
Q 041698 166 FRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIERGRHEEAREELRK 244 (355)
Q Consensus 166 ~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~ 244 (355)
+|....++.......+..++|.+++.+.+ ..+.-..|.+..+..++..+. .+++||+-...... ++ ..++
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~---~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~~---~~~~ 215 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVK---FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS---DA---TLRE 215 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHHHhhccccccCccccc---cc---cccc
Confidence 99999999999999999999999999988 467778888888777666554 46678875311110 00 0000
Q ss_pred HhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHH
Q 041698 245 VRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMS 323 (355)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 323 (355)
....... .......++...+....+..+......++....-.....-..++++ ..+++++++.+.+
T Consensus 216 ~~~~~~~-------------~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~ 282 (463)
T KOG2816|consen 216 LTPGSLD-------------SSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDL 282 (463)
T ss_pred cCCCccc-------------chhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHH
Confidence 0000000 0000111111111111222233233323222221111110112222 4589999999999
Q ss_pred HHHHHHHHHHHhhhhh-heecccCCcccccc
Q 041698 324 AVITGIVNVVATMVSI-YGVDKWGRRFLFLE 353 (355)
Q Consensus 324 ~~~~~~~~~~~~~~~g-~l~d~~g~r~~~~~ 353 (355)
.+..+....++.++.. .+...++.|+....
T Consensus 283 ~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~l 313 (463)
T KOG2816|consen 283 LSLVSILGIISQLLLLPLLSSILGEKRLISL 313 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Confidence 9999999999988887 66666777764433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=105.45 Aligned_cols=143 Identities=14% Similarity=0.064 Sum_probs=99.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchh-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRK-------LSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIG 148 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 148 (355)
|++..+.+.+.+++.++..++.+++|+++||+||| ....+..++.++..++....++.+...+.-++.+++.+
T Consensus 284 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (476)
T PLN00028 284 GLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQ 363 (476)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999875 23333333333334444555666655556666666655
Q ss_pred ccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcccc
Q 041698 149 FANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILP 223 (355)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 223 (355)
...+....+..+.. +++|+...++...+..+|..+++.+.+ ..+..+|+..|++.+++.++..++.++++
T Consensus 364 ~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~----~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 364 AACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF----TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH----hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 55555556666655 468999999988877777777776543 11234699999888877776666555544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.7e-10 Score=99.72 Aligned_cols=139 Identities=17% Similarity=0.078 Sum_probs=106.8
Q ss_pred cCCcchhHHHHHHHH-HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHhhhccc
Q 041698 76 QYDSETLTMFTSSLY-LAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF------AQAIWMLIVGRLLLGFGIG 148 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~-l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~g 148 (355)
|++.++.+++..... ....++.++.|++.||+|+|+.+..+..+.++..+.... .++...+.....+.+++.+
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG 318 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence 899999999988876 466778999999999999999998877766443332221 1233344555566667777
Q ss_pred ccccchhhhhhhcCCC-CcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH
Q 041698 149 FANQSVPLYLSEMAPY-RFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV 217 (355)
Q Consensus 149 ~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 217 (355)
...+.......+..++ +++++.+++.+...++|..++|.+++.+.+ ..||+..|...+++.++..+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~---~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD---RFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHccHHHHHHHHHHHHHHHH
Confidence 7777777787777766 788999999999999999999999999987 56788888887766655443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=106.14 Aligned_cols=136 Identities=25% Similarity=0.172 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHhhhcccccccchhhhhhhcCC
Q 041698 86 TSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAI--WMLIVGRLLLGFGIGFANQSVPLYLSEMAP 163 (355)
Q Consensus 86 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~ 163 (355)
.....+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+...+....+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344567778889999999999999999999999999888877776543 455556667777777778888899999999
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCCh
Q 041698 164 YRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTP 226 (355)
Q Consensus 164 ~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~ 226 (355)
++.|+.++++......+|.+++|.+.+ +.+ .++...+.+.+...++..+..+++||+.
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE----KWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH----HHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 999999999999999999999999988 433 4566677777777666666667788875
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=89.83 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=114.7
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHhh
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-------QAIWMLIVGRLLLG 144 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G 144 (355)
++.+|+|.+|...+.++..+|..+| ++.|.+.|++|++.++.+|.+...+|......+ .++|.+.+..++.|
T Consensus 29 k~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~ 107 (250)
T PF06813_consen 29 KSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGG 107 (250)
T ss_pred HHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHc
Confidence 4455999999999999999999875 889999999999999999999999999776653 36788888888888
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
.+.+....+......+.+| ++||.+.++.-...++++.+-..+...+.+. ..-...+.....+.++.++..++++.
T Consensus 108 ~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~---~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 108 NSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD---DPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred ccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHHhhheec
Confidence 8877777777777788887 5799999999999999988877666655542 22334444444444444444444443
Q ss_pred C
Q 041698 225 T 225 (355)
Q Consensus 225 ~ 225 (355)
.
T Consensus 184 ~ 184 (250)
T PF06813_consen 184 V 184 (250)
T ss_pred c
Confidence 3
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=99.44 Aligned_cols=152 Identities=20% Similarity=0.218 Sum_probs=131.5
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
.+++|++..+...+.....+..++|++++|++.||+|.|+++.++.++..+.++..-+...-..+.++-.+.|.+.|+.+
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence 34569999999999999999999999999999999999999999999999999888887777777788889999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCC
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDT 225 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (355)
+.+-+|..+..|+++-++..+++....-.+..+||.+.+.+.+.++ +-|.-+....++..+.++....+|++
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9999999999999999999999999999999999999999998776 35555555444444455555666655
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.3e-10 Score=102.40 Aligned_cols=140 Identities=16% Similarity=0.043 Sum_probs=97.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh--ch-hHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHhhhcccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF--GR-KLSMFFGG---ILFLAGALLNGFAQAIWMLIVGRLLLGFGIGF 149 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Gr-r~~l~~~~---~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 149 (355)
|++..+.+...+.+.++..++.++.|+++||+ ++ |....... .+..++..... ..+...+.+..+..|++...
T Consensus 275 g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~ 353 (434)
T PRK11663 275 GVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFG 353 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999999999999 33 33222211 11111111111 22333333444445543322
Q ss_pred cccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh
Q 041698 150 ANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
..........|.+|+++|++++++.+....+|..++|.+.+.+.+ +.+|+..|++.+++.++..+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~---~~g~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 354 PQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLE---IWHWTGFFVVISIAAGISALLL 420 (434)
T ss_pred HHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHH---hcccHHHHHHHHHHHHHHHHHH
Confidence 222334567899999999999999999999999999999999988 5789999988887766655444
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-09 Score=99.42 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=89.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHH-HH---HhhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALL-NG---FAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~~---~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|++..+.++....+.++..++.++.|+++||+|||+.+..+..+..+.... .. ..+++..+.+..++.|++.+...
T Consensus 270 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 349 (434)
T PRK15075 270 HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYN 349 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 888888899988999999999999999999999999988765544332221 11 12344444455555666666666
Q ss_pred cchhhhhhhcCCCCcccchhhHHHH-HHHHHHHHHHHHHHHhhcCC
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQL-SITVGILIANVLNYFFNKIH 196 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~i~~~~~~~~ 196 (355)
+....++.|.+|+++|+...++... +..++..++|.+.+.+.+..
T Consensus 350 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 350 GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 6677889999999999999998544 44455778999999888743
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-10 Score=101.46 Aligned_cols=117 Identities=9% Similarity=0.083 Sum_probs=99.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.++..+...++..++.++.|+++||+|||+.+...........++....++.+.+++..++.|++.+...+...
T Consensus 281 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 360 (398)
T TIGR00895 281 GFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLY 360 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999555444443333333333356777788888999999999999999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHh
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFF 192 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~ 192 (355)
+++.|.+|+++|+++.++......+|..++|.+++.+
T Consensus 361 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 361 ALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999999999999999998865
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=95.56 Aligned_cols=269 Identities=12% Similarity=0.142 Sum_probs=169.1
Q ss_pred ccCCcchhH-HHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 75 CQYDSETLT-MFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 75 ~~~s~~~~~-~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
.|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++...+-+..++.|++.+. ..+
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-eva 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHH
Confidence 477777765 344455566778889999999999999999999999999999999999999999999999998764 777
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcC
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERG 233 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 233 (355)
..+|+-...++++--++.+...++..+|..++.+++-.+.... ..+++...++......+.++..+++|..++...-++
T Consensus 114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~-~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r 192 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFG-GVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHR 192 (412)
T ss_pred HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceec
Confidence 7888888888887788888888888888888888877776533 356777777777666666677778887665432222
Q ss_pred ChHHHHHHHHHHhCCC--ccHHHHHHH-HHHHHHhhccccc----hhhhhccCchhHHHHHHHHHHHHHcccccchHhcH
Q 041698 234 RHEEAREELRKVRGVN--DVEEEFNDL-VAASEASRQVEHP----WKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYA 306 (355)
Q Consensus 234 ~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
+.++... .++...++ +.+++.++. ++....+...+.. ++++.+ -...+.++...+.+.....++..+.+|.
T Consensus 193 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~y~~~~ll~WSlWWa~atcgy~qv~nYv 270 (412)
T PF01770_consen 193 KPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKS-CYSNPRLLLWSLWWAFATCGYYQVINYV 270 (412)
T ss_pred cCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHhHHHHHHHHH
Confidence 2111110 00000000 000000000 0000000000111 122211 1112223333344444445556666677
Q ss_pred HHHHHhc---CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCC
Q 041698 307 PVLFNTI---GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGR 347 (355)
Q Consensus 307 ~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 347 (355)
..+.++. +-.....|..-+...+.+.++.+..|++..+..+
T Consensus 271 Q~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~ 314 (412)
T PF01770_consen 271 QSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDR 314 (412)
T ss_pred HHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHH
Confidence 6666654 3344556777888888888888888888444443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-09 Score=95.94 Aligned_cols=134 Identities=10% Similarity=0.063 Sum_probs=107.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGIL-FLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|++..+.+.+.+.+.++..++.++.+++.||.+ |+.++.+..+ .....++....++.+.+.+..++.|++.+...+..
T Consensus 248 g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~ 326 (394)
T PRK10213 248 GFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGW 326 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 889999999999999999999999999999965 4444444444 34434444566778888888999999999889988
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHH
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALI 214 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~ 214 (355)
.+++.+..| +++++..+.......+|..+|+.+++.+.+ ..|++..+...+++.++
T Consensus 327 ~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~---~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 327 STWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALD---NIGLTSPLMLSGTLMLL 382 (394)
T ss_pred HHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccChhhHHHHHHHHHHH
Confidence 888998886 556788888888899999999999999988 56788888776655443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=98.60 Aligned_cols=138 Identities=14% Similarity=0.068 Sum_probs=108.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhh-hhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhh
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTR-QFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPL 156 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 156 (355)
++.+.+++.+...++...+..+.+++.| |++.++.+..+.++.+++.++.+++++++.+.+..++.|++.+...|...+
T Consensus 241 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~ 320 (400)
T PRK11646 241 SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARET 320 (400)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHH
Confidence 6678888888887777666666666665 467677778888888888888888888888888888889988888889999
Q ss_pred hhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccch-HHHHhhhHHHHHHH
Q 041698 157 YLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGW-RLSLGGAMVPALII 215 (355)
Q Consensus 157 ~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w-~~~~~~~~~~~~~~ 215 (355)
++.+..|+++|++.+++.+....+|..+||.+++.+.+..+..+. ...++..+...++.
T Consensus 321 ~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 380 (400)
T PRK11646 321 LSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLIT 380 (400)
T ss_pred HHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875432232 34444434444433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-09 Score=98.58 Aligned_cols=118 Identities=25% Similarity=0.334 Sum_probs=100.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhcccccccchhh
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-QAIWMLIVGRLLLGFGIGFANQSVPL 156 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~ 156 (355)
+..+.+++.+...++..++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888899999999999999999999999999998888887776665 46677778888899999988888889
Q ss_pred hhhhcCC-------CCcccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q 041698 157 YLSEMAP-------YRFRGALNIGFQLSITVGILIANVLNYFFNKI 195 (355)
Q Consensus 157 ~~~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~ 195 (355)
+++|..+ ++++|...++.+....+|..+++.+.+.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888765 45569999999999999999999999988763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-09 Score=110.81 Aligned_cols=136 Identities=17% Similarity=0.154 Sum_probs=117.4
Q ss_pred cCCcc-hhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSE-TLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~-~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|++.. +.+++.+...++.++++++.|+++||+++|+.+.++.++.+++.++..+..+.+.++++.++.|++.+...+..
T Consensus 264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 343 (1146)
T PRK08633 264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPL 343 (1146)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 88888 99999999999999999999999999999999999998888888888888899989999999999999999999
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHH
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPAL 213 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~ 213 (355)
.+++.+..|++.|++++++.+....+|.++++.+++.+... .+++...+++.+.+.+
T Consensus 344 ~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 344 NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGL--GLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888887766541 2356556655554433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=96.00 Aligned_cols=121 Identities=18% Similarity=0.074 Sum_probs=97.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|.+..+.+.+.+...++..++.++.|++.||+ +||+.+.++.++.+++.++..+.++.+... .-++.|++.+...+..
T Consensus 228 g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~ 306 (355)
T TIGR00896 228 GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLA 306 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHH
Confidence 88999999999999999999999999999999 567777788888888777776655433322 4467899998888887
Q ss_pred hhhhhhcCC-CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041698 155 PLYLSEMAP-YRFRGALNIGFQLSITVGILIANVLNYFFNKIHG 197 (355)
Q Consensus 155 ~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~ 197 (355)
.+.+.+..+ +++++...++.+....+|..++|.+.+.+.+..+
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 307 LTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777665544 4566888898888888999999999999988554
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=99.30 Aligned_cols=148 Identities=11% Similarity=0.067 Sum_probs=97.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH---HHHHHHHH--hhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFL---AGALLNGF--AQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|.+..+.++..+.+.++..++.++.|+++||+++++....+..+.. ++.+.... ..+.+...+..++.|++....
T Consensus 283 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 362 (438)
T TIGR00712 283 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGP 362 (438)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccH
Confidence 8888899999999999999999999999999975432222322221 11121112 123343344445555543222
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHH-HHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCCh
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVG-ILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTP 226 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G-~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (355)
.........|.+|+++|+++.++.+....+| ..++|.+.+.+.+ +.+|...+++..+..++..+. .+.+||++
T Consensus 363 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 363 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD---FFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHH---hccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2222345679999999999999998877776 5789999999987 457888888776665555444 34566653
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.5e-09 Score=94.36 Aligned_cols=134 Identities=20% Similarity=0.146 Sum_probs=105.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-----QAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~ 150 (355)
|++..+.++......++..++.++.|+++||+|+|+.+.++.++..++.++..+. ++++.+++..++.|++.+..
T Consensus 247 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~ 326 (406)
T PRK15402 247 QLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLA 326 (406)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHH
Confidence 7888889998888888999999999999999999999999888887777666553 35666778888999998887
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPAL 213 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~ 213 (355)
.+......... ++++|++..+..+....+|..+|+.+++.+.+. .++....+..++.++
T Consensus 327 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~ 385 (406)
T PRK15402 327 NAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG---GGNGLFNLFNLANGL 385 (406)
T ss_pred hhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC---CchHHHHHHHHHHHH
Confidence 77666555443 458899999999999999999999999998763 344444443333333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.1e-10 Score=101.82 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=105.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF----AQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.+..+.++......++..++.++.|++.||+|||+.+.++..+.+++..+..+ ..+++.+....++.|++.+...
T Consensus 287 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 366 (485)
T TIGR00711 287 GYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFF 366 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999888888877663 2356677777889999999888
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
+.......+..|+++|+.+.++.+....+|..+|+.+.+.+.+
T Consensus 367 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 367 MPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888999999999999999999999999999888765
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.1e-09 Score=91.21 Aligned_cols=128 Identities=13% Similarity=0.044 Sum_probs=103.4
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
+|++..+.+...+.+..+..+|.++.+++.||+|+|+.+.++..+..++.++....++...+ .+-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999998888888877666555543332 35557899999999999
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhh
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGA 208 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~ 208 (355)
.+...+..|++ .+.+.++. ....+|..+.|.+.|.+.+ ..+.+..|++.
T Consensus 252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad---~~g~~~a~~v~ 300 (310)
T TIGR01272 252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLAD---CLGIQLAFALP 300 (310)
T ss_pred HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHH---hccchHHHHHH
Confidence 99988887654 45666665 5667899999999999987 45677777643
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.1e-09 Score=92.40 Aligned_cols=133 Identities=12% Similarity=0.008 Sum_probs=107.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.|++.+...++..+++++.+++.||.++|+++..+.. .++...+.++.++++...+..++.|++.+...+...
T Consensus 237 g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~ 315 (393)
T PRK11195 237 GITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMN 315 (393)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 8899999999999999999999999999999999988887753 444455556677888778888899999988888888
Q ss_pred hhhhhcCCCCc-ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHH
Q 041698 156 LYLSEMAPYRF-RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVP 211 (355)
Q Consensus 156 ~~~~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~ 211 (355)
+.+.+..|++. +|++.++.+....+|..++..+.+.+... ...++..+...+.+
T Consensus 316 ~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 370 (393)
T PRK11195 316 ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKL--GVPVVAVIVGFGLL 370 (393)
T ss_pred HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 88888766654 79999999999999999999998877542 13455555545544
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-09 Score=86.06 Aligned_cols=149 Identities=13% Similarity=0.035 Sum_probs=109.4
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGA-LLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
++.+|+|....+.+.+....-.++.+++.|.++|++|++-..+.+..+..+.. ....| +.+.=.....+.|++.+..
T Consensus 292 ~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysll 369 (459)
T KOG4686|consen 292 QKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLL 369 (459)
T ss_pred HHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHH
Confidence 44559999999999999999999999999999999999977766655444433 33333 2233345666778877666
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhh-hHHHHHHHHHHhccc
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGG-AMVPALIITVGSMIL 222 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~ 222 (355)
.......++...|+++.|++.+..++..++|..+.|++++++.+..+++.|--.|.. .+.+++....+.+.+
T Consensus 370 AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 370 ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 555666777888889999999999999999999999999999987765666555553 333344433333333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-09 Score=93.92 Aligned_cols=147 Identities=17% Similarity=0.242 Sum_probs=124.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+.+....|.+.+...+.-.+.-.+..++.+|+|.|+.++++.++.++=-++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccchhhH-HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCC
Q 041698 156 LYLSEMAPYRFRGALNIG-FQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDT 225 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~ 225 (355)
.|+++.+|+|..++...+ ...+..+|..+.+.++|.+.+ +.|.+..|++.+.+.+...+.. +.++++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd---~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD---RIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh---hcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 999999998877676666 467889999999999999988 7889999988888877665554 445443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-09 Score=100.38 Aligned_cols=146 Identities=16% Similarity=0.175 Sum_probs=131.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFG--RKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..++.+..+++.+.++++++++.++..-.+.|+..|.....
T Consensus 329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l 408 (509)
T KOG2504|consen 329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSL 408 (509)
T ss_pred CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999987 667778889999999999999999999999999999999999888
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcccc
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILP 223 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 223 (355)
....+.|....++-..+.|+.....+++.++||++++.+.+.++ +|...|+..++..++....++..+
T Consensus 409 ~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 409 TPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC--CeeeehhhcChHHHHHHHHHHHhH
Confidence 88899999999999999999999999999999999998888665 488888888887777666665555
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-09 Score=108.52 Aligned_cols=134 Identities=14% Similarity=0.119 Sum_probs=111.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh--------------------hHHHH
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA--------------------QAIWM 135 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------------~~~~~ 135 (355)
|.+..+.+++.+.+.++.++++++.|+++|+.++++.+..+.++.+++.+..++. ++.+.
T Consensus 257 g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1140)
T PRK06814 257 GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR 336 (1140)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence 8899999999999999999999999999999887777766666666655544443 67788
Q ss_pred HHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHH
Q 041698 136 LIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVP 211 (355)
Q Consensus 136 l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~ 211 (355)
++++.++.|++.+...+...+++.+.+|+++||+++++.+....+|..+++++.+.+... ..++...+++.+..
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~--~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 337 ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL--GFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999999999999999999888642 23566665544443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=93.16 Aligned_cols=141 Identities=19% Similarity=0.212 Sum_probs=112.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh--chhHHH-HHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF--GRKLSM-FFGGILFLAGALLNGFAQ--AIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~ 150 (355)
|+|..+.++..+.+=++...|++++|+++||+ |||... ++.+++..++.+..-.++ |+++..++-++.|+..-+.
T Consensus 284 ~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGP 363 (448)
T COG2271 284 GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGP 363 (448)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999995 777655 444444444444444554 5688888999999987776
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHH-HHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITV-GILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
.-..-....|..|++--|.+.|+...+..+ |...+....+.+.+ .+||...|++..+.+++..+..
T Consensus 364 qmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d---~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 364 QMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIAD---TWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred HHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEe---cCCCcchHHHHHHHHHHHHHHH
Confidence 767777788999999999999999999888 88888888888777 5789998887766666554443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-09 Score=96.21 Aligned_cols=147 Identities=8% Similarity=-0.002 Sum_probs=116.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-QAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
+.+....+.+.+.+.+.....+++.|++.||+++|+.+..+..+..++.....+. ++.+.++++.++.|++.+...|..
T Consensus 240 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~ 319 (395)
T PRK10054 240 DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGE 319 (395)
T ss_pred chHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5566777888888888888888999999999999999999988888888777664 577777888899999998888888
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH-HhccccCCh
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV-GSMILPDTP 226 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~ 226 (355)
..++.+..|++.|++..+... ...+|..+||.+++.+.+ +.+....|++.+....+..+ ......|+|
T Consensus 320 ~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 320 YMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT---TLPPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred HHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH---HcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 899999999999999888655 556899999999999988 55677777766555443333 334455554
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-09 Score=98.48 Aligned_cols=119 Identities=16% Similarity=0.071 Sum_probs=106.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA---QAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
|.|..+.+.....+.++..++.++.|++.||+|+|+.+..+.++.+++.++.... ++.+...+..++.|++.|...+
T Consensus 291 g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~ 370 (495)
T PRK14995 291 GLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALL 370 (495)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHH
Confidence 8899999999999999999999999999999999999999988888777665442 4566677788999999999999
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 371 ASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999888754
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-09 Score=94.28 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=90.1
Q ss_pred cCCcchhHHHHHHHH-HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHh
Q 041698 76 QYDSETLTMFTSSLY-LAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-----------QAIWMLIVGRLLL 143 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~-l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~ 143 (355)
|++.++.+.+.++.. ++..++.+++|++.||+|||+.+.++.++.+++..+..+. ++.+.+..+.++.
T Consensus 240 g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (356)
T TIGR00901 240 GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLE 319 (356)
T ss_pred CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHH
Confidence 889999998887766 6788999999999999999999998888888777655543 4567788889999
Q ss_pred hhcccccccchhhhhhhcCCCCcccchhhHHHHHHH
Q 041698 144 GFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSIT 179 (355)
Q Consensus 144 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 179 (355)
+++.+...+...+++.|.+|+++|++.+++.+...+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 320 AVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 999999999999999999999999999999887654
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=91.21 Aligned_cols=149 Identities=19% Similarity=0.306 Sum_probs=118.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-hHHHHHHH----HHHHhhhcccccc
Q 041698 77 YDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-QAIWMLIV----GRLLLGFGIGFAN 151 (355)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~----~r~l~G~~~g~~~ 151 (355)
.+....+.+.+...++-.+.-.+.+++..|+|.|+++.++.+..++=..+.+.. ++.+...+ ...++|+..+...
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 667777888888888899999999999999999999999999999988888877 45444333 3557999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHH-HHHHHHHHHHHHHHHhhcCCC---ccchHHHHhhhHHHHHHHHHHh-ccccCC
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQL-SITVGILIANVLNYFFNKIHG---GWGWRLSLGGAMVPALIITVGS-MILPDT 225 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~i~~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~-~~~~e~ 225 (355)
.+...++.+..|++.|+++.+++.. ..++|..+|..++|.+.+..+ ...|...+.+.+.+.++..+.+ ++++|+
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999998776 468999999999999987432 1345566666666655554443 334443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.8e-09 Score=97.15 Aligned_cols=146 Identities=18% Similarity=0.092 Sum_probs=98.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHH--------HHHHHHH--HHHHHHHHH-hhHHHHHHHHHHHhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSM--------FFGGILF--LAGALLNGF-AQAIWMLIVGRLLLG 144 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l--------~~~~~~~--~~~~~~~~~-~~~~~~l~~~r~l~G 144 (355)
|.+..+.+++.++..++..++.++.|+++||+++|+.. ..+.... ++..++... ..+.+..+++-.+.+
T Consensus 293 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (465)
T TIGR00894 293 RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLAN 372 (465)
T ss_pred CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 88999999999999999999999999999998755221 1111111 111111122 223444445555556
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL 222 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (355)
.+.+...+.......|..|+ .+|.+.++.+....+|..++|.+.+.+.+.....+|+..|.+.++..++..+...++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 373 AVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred HHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 55555555555555676654 789999999999999999999999988763322358899988887777666555444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=91.57 Aligned_cols=140 Identities=11% Similarity=0.125 Sum_probs=102.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG-FAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|.+..+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++.. ..++.+..++..++.+.+.....+..
T Consensus 231 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 310 (382)
T PRK10091 231 GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPL 310 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 88999999999999999999999999999999999999998888887776554 34555666666666666655444444
Q ss_pred hh-hhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh
Q 041698 155 PL-YLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 155 ~~-~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
.. ...+..+++.++.. .......+|..+||.+++.+.+.. .+|+..+.+.+...++.....
T Consensus 311 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 311 QILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLG--LAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcc--cCcchHHHHHHHHHHHHHHHH
Confidence 43 33444444444443 346678899999999999988742 468888887776655544443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-08 Score=88.40 Aligned_cols=127 Identities=19% Similarity=0.310 Sum_probs=97.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-----QAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~ 150 (355)
|.+..+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++..+. ++...+.+..++.|++.+..
T Consensus 238 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 317 (385)
T TIGR00710 238 GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMI 317 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999998888887777666543 23455566678889988888
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHH-HHHHHHHHHHHhhcCCCccchHHHHhh
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITV-GILIANVLNYFFNKIHGGWGWRLSLGG 207 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~~~~~~~~~~~~w~~~~~~ 207 (355)
.+....+..|..| ++|+++.++.+..... |.+.++.++ ...+ ..+|...+..
T Consensus 318 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~---~~~~~~~~~~ 370 (385)
T TIGR00710 318 SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHG---NTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccc---cChHHHHHHH
Confidence 8888888888876 6789999988766654 555555544 4433 2345544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-08 Score=92.38 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=99.8
Q ss_pred cCCcchhHHHHHHH-HHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHH---HHh-hHHHHHHHHHH----Hhhhc
Q 041698 76 QYDSETLTMFTSSL-YLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLN---GFA-QAIWMLIVGRL----LLGFG 146 (355)
Q Consensus 76 ~~s~~~~~~~~s~~-~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~----l~G~~ 146 (355)
|++..+.+++.+.. .++..++.++.|++.||+|+|+.+.++.++..+..+.. ++. ++.+.+++.-+ ..|++
T Consensus 241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 320 (402)
T PRK11902 241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMG 320 (402)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 88999999998665 45689999999999999999999887777766655433 343 45566665554 44555
Q ss_pred ccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 147 IGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
.+...+....++.+.+|.++ .+......++|..+++.+++.+.+ ..||+..|.+.++++++..+..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~---~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 321 TAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVE---AYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHH---HhChHHHHHHHHHHHHHHHHHHH
Confidence 55566666667777666554 455566667788777778988888 67899999988887776655543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-09 Score=97.78 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=94.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc-hhHH-HHHHH-HHHHHHHHHHHH--hhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFG-RKLS-MFFGG-ILFLAGALLNGF--AQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~-l~~~~-~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|.+..+.++..+.+.++..++.++.|+++||.+ ||+. +.... ....++...... ..+.+..++..++.|+.....
T Consensus 248 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 327 (379)
T TIGR00881 248 GFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGP 327 (379)
T ss_pred CCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhh
Confidence 889999999999999999999999999999864 3332 22222 122222222222 235556666677777766566
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSL 205 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~ 205 (355)
.+....+..|..|+++|+++.++.+....+|..++|.+.+.+.+ +.||++.|
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~f 379 (379)
T TIGR00881 328 QMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD---GFGWAGAF 379 (379)
T ss_pred hHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH---hhcccccC
Confidence 66667788999999999999999999999999999999999988 56787653
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-09 Score=95.04 Aligned_cols=134 Identities=10% Similarity=0.051 Sum_probs=90.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLS-MFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
+.+..+.+...+...++..++.++.|+++||++||+. +....++.+++..+.....+....+++-.+.+++.....+..
T Consensus 275 ~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 354 (412)
T TIGR02332 275 GSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIF 354 (412)
T ss_pred CCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHH
Confidence 5577888999999999999999999999999997764 333433433333222222222222222222233322233334
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHH
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVP 211 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~ 211 (355)
.....|.+|+++|+.+.++.+....+|.+++|.+.+.+.+..+ +|++.+++.++.
T Consensus 355 ~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g--~~~~~~~~~~~~ 409 (412)
T TIGR02332 355 WTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG--SFNSGLWFVAAL 409 (412)
T ss_pred HhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC--CCchhHHHHHHH
Confidence 4555678899999999999999999999999999999887433 588877765543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.4e-08 Score=88.67 Aligned_cols=141 Identities=11% Similarity=0.044 Sum_probs=93.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhch---hHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGR---KLSMFF-GGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr---r~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.+.. .+...+...+...++ .++++||..| |+.... ..++.++.....++..+.+..++.-++.|++.....
T Consensus 223 g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (368)
T TIGR00903 223 GLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAY 298 (368)
T ss_pred CCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhH
Confidence 55543 455555555554444 4677777654 333332 344444444444555555555556667777777777
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCC
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDT 225 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (355)
+...++.+|.+|++.|++++++.+....+|..++|.+.+.+.. +-+..|.+.+++.++..+....++++
T Consensus 299 ~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~~~i~~~~~~~~~~~ 367 (368)
T TIGR00903 299 AIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-----SAEAYFTFLAILITIAFAIALLLPND 367 (368)
T ss_pred HHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7788899999999999999999999999999999988887763 45666776666666655544444543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-08 Score=88.14 Aligned_cols=133 Identities=28% Similarity=0.389 Sum_probs=112.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhhhcccccccchhhh
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQA--IWMLIVGRLLLGFGIGFANQSVPLY 157 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~ 157 (355)
...++..+.+.++..++.++.|.++||+|||+.+..+.....++.++..+..+ .+.+++.|+++|++.+...+....+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57899999999999999999999999999998888888776666677777665 9999999999999999999999999
Q ss_pred hhhcCCC-CcccchhhHHHH-HHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHH
Q 041698 158 LSEMAPY-RFRGALNIGFQL-SITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPAL 213 (355)
Q Consensus 158 ~~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~ 213 (355)
+.|+.|+ ++|+...+.... ...+|..+++.+++.+... ...+||..|........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 9999987 678888888888 5888889998888777654 34689997766655543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-08 Score=91.55 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=97.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA--QAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
|.+....++......++..++.++.+++.||+|+|+.+.++.++.+++.++..+. ++++.+.+..++.|+|.+...+.
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~ 339 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTV 339 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555567788999999999999999999999999888888777664 36777777888899999999999
Q ss_pred hhhhhhhcCCCC-------cccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 154 VPLYLSEMAPYR-------FRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 154 ~~~~~~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
..+...|..+.+ ++|...++.+....+|..+++.+.+.+.+
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887654 34888999999999999999998888754
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-07 Score=89.19 Aligned_cols=144 Identities=16% Similarity=0.258 Sum_probs=117.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHhhhc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQ-FGRKLSMFFGGILFLAGALLNGFAQ--------AIWMLIVGRLLLGFG 146 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~--------~~~~l~~~r~l~G~~ 146 (355)
|++......+...+....-+..+++|.++|+ +||++.++++.++..++.++.++.. .....+++-.+.++|
T Consensus 19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G 98 (654)
T TIGR00926 19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALG 98 (654)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhh
Confidence 8888888999999888888999999999997 6999999999999999998877642 123466777888899
Q ss_pred ccccccchhhhhhhcCCCCc---ccchhhHHHHHHHHHHHHHHHHHHHhhcCC----CccchHHHHhhhHHHHHHHHHHh
Q 041698 147 IGFANQSVPLYLSEMAPYRF---RGALNIGFQLSITVGILIANVLNYFFNKIH----GGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
.|++-+...+...|.+++++ |-....+++.+.++|.++++.+..++.+.. ...+|...|.+.++..++.++.+
T Consensus 99 ~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 99 TGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred ccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987543 567888999999999999999988886421 12469999988887766655544
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.7e-09 Score=89.50 Aligned_cols=133 Identities=17% Similarity=0.073 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCccc
Q 041698 89 LYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRG 168 (355)
Q Consensus 89 ~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~ 168 (355)
..+.-..|.++.+.+.||+|||+.+..+.+++++..+....+.+-..+.+.-+..-++.++.+.+.++|..|.+|.+-|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 34667789999999999999999999999999999988877754433333333333334455667889999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCCh
Q 041698 169 ALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTP 226 (355)
Q Consensus 169 ~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~ 226 (355)
...|....+.-+|+++.|+++ ...+ .+-.....+.+...++..++..++|-.+
T Consensus 470 tgvGtcSsmaRIggI~~p~iA-~~~e----~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIA-MRAE----LSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHH-HHhc----cceeehHHHHHHHHHHHHHHheeeeecc
Confidence 999999999999999999999 3332 2233344555666666666666776443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-07 Score=84.03 Aligned_cols=147 Identities=17% Similarity=0.151 Sum_probs=110.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh---hHHH------HHHHHHHHhhhc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA---QAIW------MLIVGRLLLGFG 146 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~------~l~~~r~l~G~~ 146 (355)
|++..+..++.....+...+..+.+..+.||+|||+.++.+..+..+..+++... .+.. ..+++.++..++
T Consensus 301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~ 380 (485)
T KOG0569|consen 301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIIS 380 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999999999999988776653 1211 223444444333
Q ss_pred ccc-cccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccC
Q 041698 147 IGF-ANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPD 224 (355)
Q Consensus 147 ~g~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e 224 (355)
.+. .-|...-+.+|.+|++.|+.++++.....-++..+-...-..+.+..+ = +.|....+++++..+. ++.+||
T Consensus 381 f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g---~-~~filF~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 381 FAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG---P-YVFILFVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred hhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c-hhhHHHHHHHHHHHHHHHHhCcc
Confidence 222 356777888999999999999999888888877776666666655322 2 5666666666655544 567899
Q ss_pred Ch
Q 041698 225 TP 226 (355)
Q Consensus 225 ~~ 226 (355)
++
T Consensus 457 Tk 458 (485)
T KOG0569|consen 457 TK 458 (485)
T ss_pred cC
Confidence 86
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.6e-09 Score=93.61 Aligned_cols=148 Identities=20% Similarity=0.178 Sum_probs=111.7
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-----chhHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHH
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQF-----GRKLSMFFGGILFLAGALLNGFA----QAIWMLIVGRLL 142 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l 142 (355)
++++|+++.+.....+...+...+ .++.|.++|.+ .||+-++++.++..++.+..+.. .+.....++-++
T Consensus 17 ~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~l 95 (433)
T PF03092_consen 17 KDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFL 95 (433)
T ss_pred HHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHH
Confidence 444599999999888877776654 67889999986 35666677777776666655543 356667777788
Q ss_pred hhhcccccccchhhhhhhcCC--CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 143 LGFGIGFANQSVPLYLSEMAP--YRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 143 ~G~~~g~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
..++.........+.+.|... ++.|+...+.......+|.+++..++|.+.+ ..+++..|.+.+++..+..+..+
T Consensus 96 a~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~---~~~~~~~f~i~~~~~~l~~~~~~ 172 (433)
T PF03092_consen 96 ASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD---SFGPQGVFLISAALPLLMLIVAL 172 (433)
T ss_pred HHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh---cCCCeEEehHHHHHHHHHHHHHH
Confidence 888999999999999999874 3336788888888999999999999999887 56788888887777666555444
Q ss_pred ccc
Q 041698 221 ILP 223 (355)
Q Consensus 221 ~~~ 223 (355)
++.
T Consensus 173 ~~~ 175 (433)
T PF03092_consen 173 FLL 175 (433)
T ss_pred Hhh
Confidence 443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-08 Score=91.44 Aligned_cols=117 Identities=12% Similarity=0.150 Sum_probs=93.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHhhhccccccc
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF-----AQAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
+....+++.+...++..++.+++++++||+|+|+.+.++.++.+++.+...+ .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777889999999999999999999999888877766655432 34567777788889999998898
Q ss_pred chhhhhhhcCCC-------CcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 153 SVPLYLSEMAPY-------RFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 153 ~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
...++++|..+. +..|...+......-+|..+++.+.+.+.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999988652 222568889999999999999999888765
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=92.76 Aligned_cols=151 Identities=12% Similarity=0.063 Sum_probs=119.2
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHh
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF----------AQAIWMLIVGRLLL 143 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~ 143 (355)
++|+++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++...... .++.+.++..-++.
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 45999999999999999999999999999999999999999999999988755431 13444566677888
Q ss_pred hhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC----ccchHHHHh-hhHHHHHHHHHH
Q 041698 144 GFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG----GWGWRLSLG-GAMVPALIITVG 218 (355)
Q Consensus 144 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~----~~~w~~~~~-~~~~~~~~~~~~ 218 (355)
+++.+....+...++.+..|+++++...++..+..++|..+++.+++.+.+..+ +++.++... +..+..++.+..
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~ 441 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPL 441 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 999889999999999999999999999999999999999999999999887432 233333333 223333333334
Q ss_pred hccccC
Q 041698 219 SMILPD 224 (355)
Q Consensus 219 ~~~~~e 224 (355)
.+++|+
T Consensus 442 ~~llP~ 447 (468)
T TIGR00788 442 LHLLPR 447 (468)
T ss_pred HHhCCC
Confidence 456786
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.4e-08 Score=85.89 Aligned_cols=114 Identities=11% Similarity=0.156 Sum_probs=79.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+.+.+...++..++.++.+++.||+|||+.+.++..+..++.++..+.++.+..+..-.+.+.+.+...+.
T Consensus 235 g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-- 312 (392)
T PRK10473 235 GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV-- 312 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--
Confidence 888889999999999999999999999999999999999999988888888777666554444444444443333332
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
....+..|.++|+ +.......++..+++.+++++.+
T Consensus 313 ~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 313 AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455555553 33334445566666666666655
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.5e-08 Score=89.76 Aligned_cols=130 Identities=8% Similarity=-0.037 Sum_probs=103.4
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
+|++..+.++....+.++..++.++.|++.||+|+|+++..+.++..++..+..+.++.+ .+..-.+.|++.+..+|..
T Consensus 290 ~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P~~ 368 (438)
T PRK10133 290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYPTI 368 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999998888777766666655532 3456678899999999999
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccc-hHHHHhhhHH
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWG-WRLSLGGAMV 210 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~-w~~~~~~~~~ 210 (355)
.+...|..++ +.+.+.++... ..+|..++|.+.+.+.+ ..| -|..|++..+
T Consensus 369 ~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~---~~g~~~~~~~v~~~ 420 (438)
T PRK10133 369 FSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSD---AAGNIPTAELIPAL 420 (438)
T ss_pred HHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHH---hccchHHHHHHHHH
Confidence 9999998765 35677777764 44677888888888877 344 5666664443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-07 Score=79.14 Aligned_cols=142 Identities=18% Similarity=0.126 Sum_probs=115.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|+|..+.|++.+...+.+...++....+.+|. .+|+..+....+..++.+.+.+.+.-..+.- -++.|++.|..++..
T Consensus 239 G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~la 317 (395)
T COG2807 239 GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLA 317 (395)
T ss_pred CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHH
Confidence 99999999999999999999999999999975 5778888888888888888888765444433 489999999999999
Q ss_pred hhhhhhcCCCCcc-cchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 155 PLYLSEMAPYRFR-GALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 155 ~~~~~~~~~~~~r-~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
..++.+..+..++ ++..++.+....+=..+||.+.|++-+..+ +|+......+...++..+.-+
T Consensus 318 L~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--sw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 318 LTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--SWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--ChHHHHHHHHHHHHHHHHHHh
Confidence 9999887765444 677777777777778889999999988776 788888777666665554433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.6e-08 Score=87.93 Aligned_cols=116 Identities=22% Similarity=0.328 Sum_probs=104.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhcccccccchhhh
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ--AIWMLIVGRLLLGFGIGFANQSVPLY 157 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~ 157 (355)
...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ +.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5778888899999999999999999999999999999999999999988886 99999999999999999999999999
Q ss_pred hhhcCCC-------CcccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q 041698 158 LSEMAPY-------RFRGALNIGFQLSITVGILIANVLNYFFNKI 195 (355)
Q Consensus 158 ~~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~ 195 (355)
++|..+. ++.|...+.......+|..+++.+.+.+.+.
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9988863 2238889999999999999999988887653
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-07 Score=82.13 Aligned_cols=114 Identities=12% Similarity=0.191 Sum_probs=82.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF----AQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|++..+.+++.+...++..++.++.|++.||+|||+.+.++..+..+..+.... ..+++.+.++-.+.+.+.+...
T Consensus 226 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T PRK11102 226 GVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMIS 305 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999999999999999999999888765554433222 2244555555545555555555
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHH-HHHHHHHHHHHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLS-ITVGILIANVLNY 190 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~i~~ 190 (355)
.....++.|..| ++|+++.+..... ..+|..+++.++.
T Consensus 306 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 306 SNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666667777765 7888888876543 4567777776654
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.3e-08 Score=85.91 Aligned_cols=111 Identities=23% Similarity=0.387 Sum_probs=97.9
Q ss_pred cCC-cchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhcccccc
Q 041698 76 QYD-SETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA---QAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s-~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.+ ..+.+.+.+...++..++.++.|+++||+|+|+...+......++.+...+. ++....++.-++.|++.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 317 (352)
T PF07690_consen 238 GFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVF 317 (352)
T ss_dssp HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 788 7899999999999999999999999999999888877777777776665543 355777778888999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIAN 186 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 186 (355)
+....++.|..|+++|+++.++.....++|..++|
T Consensus 318 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 318 PILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.3e-08 Score=84.28 Aligned_cols=138 Identities=12% Similarity=0.045 Sum_probs=109.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh-------H----HHHHHHHHHHhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-------A----IWMLIVGRLLLG 144 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~----~~~l~~~r~l~G 144 (355)
+.+..+.+.....+.+...+..+.+|+++||+|.+|++.......+++..+..+.. + +..++...+..|
T Consensus 250 g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G 329 (417)
T COG2223 250 GLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAG 329 (417)
T ss_pred CCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999998888887777653 2 344556667777
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
+|+|..+- .+..++| ++-|.+.++.....++|+..-|..-+...+.++ .+...|++.....+++.+..+
T Consensus 330 ~GnGsvfk----~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg--~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 330 LGNGSVFK----MIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG--SYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred cCcchhee----echHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHH
Confidence 77775544 4555554 367999999999999999999988888877554 588888887777666655443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-07 Score=82.13 Aligned_cols=118 Identities=11% Similarity=0.033 Sum_probs=93.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH---H--hhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG---F--AQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~--~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|++..+.++......++..++.++.+++.||+|+|+.+....+..+++.+... . .++.+.+++...+.|++.+..
T Consensus 234 g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (401)
T PRK11043 234 GYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAI 313 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 88999999988888899999999999999999999877666555555443322 2 345566666777888888888
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.+.......|..| ++|+++.++.+.....+...++.+.+.+.+
T Consensus 314 ~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 314 YPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8888888777775 579999999999888888888888888765
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-07 Score=84.31 Aligned_cols=133 Identities=9% Similarity=-0.093 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH-Hh-----hHHHHHHHHHHHhhhcccccccchhhhhh
Q 041698 86 TSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG-FA-----QAIWMLIVGRLLLGFGIGFANQSVPLYLS 159 (355)
Q Consensus 86 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~~~ 159 (355)
..+..+...+..+++|+++||+|+|+++.++.+...++..... .. .+++.+.+..+...++.|.-......++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 3445677888999999999999999999999887777764322 22 24555555544444444444445566666
Q ss_pred hcCCC---------------------CcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH
Q 041698 160 EMAPY---------------------RFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 160 ~~~~~---------------------~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
+.+|+ ++-|.+.|+......+|+.+-|.+-+...+..+ ++...|++..+..+++...
T Consensus 372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~ 449 (462)
T PRK15034 372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG--SPVGAMKVFLIFYIVCVLL 449 (462)
T ss_pred HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHH
Confidence 66653 134678888999999999999977777666544 5777777777666655554
Q ss_pred hc
Q 041698 219 SM 220 (355)
Q Consensus 219 ~~ 220 (355)
.+
T Consensus 450 ~w 451 (462)
T PRK15034 450 TW 451 (462)
T ss_pred HH
Confidence 33
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.5e-07 Score=82.35 Aligned_cols=115 Identities=18% Similarity=0.298 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhhcccccccchhhhh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF--AQAIWMLIVGRLLLGFGIGFANQSVPLYL 158 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~~ 158 (355)
..+.+.....++..++.+++++++||+|+|+.+.++.++.+++.....+ .++.+.+++..++.|++.+...+...+.+
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677888899999999999999999999888766654443332 35777788888999999999999999999
Q ss_pred hhcCCC-------CcccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q 041698 159 SEMAPY-------RFRGALNIGFQLSITVGILIANVLNYFFNKI 195 (355)
Q Consensus 159 ~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~ 195 (355)
+|..+. +..|...+.......+|..+++.+++.+.+.
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988752 2225677888888899999999999887663
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-07 Score=85.07 Aligned_cols=135 Identities=19% Similarity=0.195 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhch-----hHHH--HHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHhhh
Q 041698 82 LTMFTSSLYLAALLSSLVASRVTRQFGR-----KLSM--FFGGILFLAGALLNGF---------AQAIWMLIVGRLLLGF 145 (355)
Q Consensus 82 ~~~~~s~~~l~~~~~~~~~g~l~dr~Gr-----r~~l--~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~ 145 (355)
.+++.+...+...+.+++..++-.+.+| +... .+|.++.+++.+..++ ..|+++++...++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 6788888888888888776544333333 3333 7788888888777764 4689999999999999
Q ss_pred cccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh
Q 041698 146 GIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
|+....|...+++.+..|++.||+.++++..+..+|..+++.+...... ..+|...|...++..++..+..
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV---PQGVTGVFGKIGLVTLLVGVVM 464 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998887765 3467777776666655544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.5e-07 Score=85.62 Aligned_cols=135 Identities=12% Similarity=0.086 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHHHHHhh----hhhhhhhchhHHHHHHHHHHHHHHHHHHHhhH---------HHHHHHHHHHhhhccc
Q 041698 82 LTMFTSSLYLAALLSSLVA----SRVTRQFGRKLSMFFGGILFLAGALLNGFAQA---------IWMLIVGRLLLGFGIG 148 (355)
Q Consensus 82 ~~~~~s~~~l~~~~~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~l~~~r~l~G~~~g 148 (355)
.++..+...+...+..++. +++.||++.++.+.++.++.+++.+..+++.+ .++++..+++.|+++.
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 4555566665555555555 67777777778899999999999988877765 4678899999999999
Q ss_pred ccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc---CCC----ccchHHHHhhhHHHHHHHH
Q 041698 149 FANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK---IHG----GWGWRLSLGGAMVPALIIT 216 (355)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~---~~~----~~~w~~~~~~~~~~~~~~~ 216 (355)
...|...+++.+..|++.||+.+|.+..+..+|..++..+...... ..+ ..+....|...++.+++..
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a 472 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA 472 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888888888777754321 000 1135667766666554433
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.8e-08 Score=84.32 Aligned_cols=140 Identities=17% Similarity=0.107 Sum_probs=111.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFG--RKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
..+..+.|...--..+.+.++..+.|.++||++ |-.....+++..++++....+++++.++++-++..|++.+.....
T Consensus 302 ~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~das 381 (464)
T KOG3764|consen 302 FTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADAS 381 (464)
T ss_pred cCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHH
Confidence 445568888888888999999999999999999 655556777777777888889999999999999888887777655
Q ss_pred hhhhhhhcCCCC------cccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH
Q 041698 154 VPLYLSEMAPYR------FRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 154 ~~~~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
..-.+.+....+ --|...++...++++|..+||.+++.+.+ ..|++|.-.+.++..++....
T Consensus 382 l~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~---~iGF~wl~~iig~~n~iyapv 449 (464)
T KOG3764|consen 382 LIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVE---AIGFEWLMTIIGILNLIYAPV 449 (464)
T ss_pred HhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhee---ehhHHHHHHHHHHHHHHHHHH
Confidence 555544444332 34788999999999999999999999988 678999888777776654433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.7e-06 Score=76.53 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=91.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHH-HHHHHHHHHHH--hhHHHHHHHHHHHhhhccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGI-LFLAGALLNGF--AQAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~-~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
|.+..+.+++.....++..+++++.+++.||++++........ ...+....... ..+.+.+++..++.|++.+...+
T Consensus 239 g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 318 (394)
T PRK11652 239 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFP 318 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999984433322222 22122122222 23567778888999999999999
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
....+..|..| ++++...++......+|..+++.+++.+..
T Consensus 319 ~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 319 LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999886 578999999999999999999999988765
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-07 Score=84.60 Aligned_cols=151 Identities=16% Similarity=0.125 Sum_probs=104.3
Q ss_pred chhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhch---------hHHHHHHHHHH
Q 041698 50 MPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGR---------KLSMFFGGILF 120 (355)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr---------r~~l~~~~~~~ 120 (355)
+|.|.++-+ |.+..+.|++.++..+...+..+++|.++||.-+ |..=.++....
T Consensus 281 ~PtY~~~VL-----------------~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ 343 (466)
T KOG2532|consen 281 LPTYLKEVL-----------------GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGP 343 (466)
T ss_pred hhHHHHHHh-----------------CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHH
Confidence 788887765 9999999999999999999999999999998754 22224444444
Q ss_pred HHHHHHHHHhhH--H----HHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 121 LAGALLNGFAQA--I----WMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 121 ~~~~~~~~~~~~--~----~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
+++.++.++.++ . ..+.+.-.+.|+..++ ...-..+.. +++-+.++++.+....+..+++|.+.+.+..
T Consensus 344 ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~G----f~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 344 AVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISG----FYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred HHHHHeeeecCCCcchHHHHHHHHHHHHcccchhh----hHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 444555555542 1 2222222333333222 222223333 4667999999999999999999999999985
Q ss_pred CCCccchHHHHhhhHHHHHHHHHHhccc
Q 041698 195 IHGGWGWRLSLGGAMVPALIITVGSMIL 222 (355)
Q Consensus 195 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (355)
......||++|++.+++.++..+.+.++
T Consensus 419 ~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 419 DNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred CCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 2224689999999988877766555443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.1e-06 Score=75.16 Aligned_cols=117 Identities=11% Similarity=0.142 Sum_probs=93.1
Q ss_pred CcchhHHHHHHHHHHHHHH-HHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh----h---------------------
Q 041698 78 DSETLTMFTSSLYLAALLS-SLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA----Q--------------------- 131 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~--------------------- 131 (355)
+.+.+.++.+...+...+. .++.+++++|++|++++.+....+.....++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4478999999888887777 8999999999999999988888777777666654 1
Q ss_pred ------HHHHHHHHHHHhhhccccccc-chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 132 ------AIWMLIVGRLLLGFGIGFANQ-SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 132 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
+.|...+..+...+-.....+ ....+.+|.++.+|-.|..++...+.++|.++++.+..++.+
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134444555555555555555 677889999999999999999999999999999999888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-07 Score=80.22 Aligned_cols=128 Identities=10% Similarity=-0.028 Sum_probs=96.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhh
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLY 157 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 157 (355)
+....+...+.+..+..+|.++++++.||+++|+++.++.++..+..++..+.++... ..+-++.|++.+..+|+..+.
T Consensus 267 ~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl 345 (410)
T TIGR00885 267 TAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGI 345 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666677888999999999999999999999999999998888888776544 566777888889999999999
Q ss_pred hhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC--cc-chHHHHhhh
Q 041698 158 LSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG--GW-GWRLSLGGA 208 (355)
Q Consensus 158 ~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~--~~-~w~~~~~~~ 208 (355)
..+..+++.+... +...+ ..+|..+.|.+.|.+.+..+ +. +.+..|++.
T Consensus 346 ~~~~~g~~~~~~s-~~l~~-~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~ 397 (410)
T TIGR00885 346 ALKGLGQDTKYGA-AGLVM-AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP 397 (410)
T ss_pred HHhhhhhhhhhhH-HHHHH-HHhccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence 9999876543323 33333 34999999999999988321 11 356666553
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-06 Score=76.87 Aligned_cols=120 Identities=18% Similarity=0.271 Sum_probs=99.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ--AIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
|.++....+.......+..++.+++.++++|+|+|+++.++.++.+++.++.-+.+ +.+.+++..++.+++.+...+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 55677777888888888889999999999999999999999999999999888865 7888999999999999999998
Q ss_pred hhhhhhhcCC------CCcc-cchhhHHHHHHHHHHHHHHHHHHHhhcC
Q 041698 154 VPLYLSEMAP------YRFR-GALNIGFQLSITVGILIANVLNYFFNKI 195 (355)
Q Consensus 154 ~~~~~~~~~~------~~~r-~~~~~~~~~~~~~G~~~~~~i~~~~~~~ 195 (355)
..+.++|..+ .++| |...+......=+|..++..+.++....
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876654 2223 6777777777788888888777776653
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-06 Score=75.60 Aligned_cols=108 Identities=19% Similarity=0.216 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCC
Q 041698 86 TSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYR 165 (355)
Q Consensus 86 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~ 165 (355)
.++.+....+++++.+.+.|+.|.|..+.++......-.+.+-+ .|-+.+++.-.+.|+|.+..+..--.|++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77888899999999999999999999999999998887776655 44667888999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 166 FRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 166 ~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.+.+..++.......+.++|..+...+..
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~ 163 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQ 163 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence 99999999999999998888776655543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-06 Score=64.83 Aligned_cols=117 Identities=20% Similarity=0.234 Sum_probs=98.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhh
Q 041698 77 YDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPL 156 (355)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 156 (355)
+++..--.-.++.+....+++++.+.+.+++|.|+.++++.+...+-.... +-++.+.++.+-++.|++.+..++..-.
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 344444455666777788888999999999999999999999988654443 5577889999999999999999999999
Q ss_pred hhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 157 YLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 157 ~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
++.+..+++.|++..+++......+.++|.++..++.+
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999887776644
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.6e-07 Score=60.59 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=60.9
Q ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 041698 71 TNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLI 137 (355)
Q Consensus 71 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~ 137 (355)
+++|.++|..+.+++.++.++||.+|++...++.++..+++.+..+.+...+..+.+++.++.+.+.
T Consensus 18 M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 18 MQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 3455599999999999999999999999999999999999999999999999999999998877653
|
Note that many members are hypothetical proteins. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-07 Score=83.27 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=122.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+-.+...|........+-++.-++.+++.+++|+-+++.+++....+=.+..++.+|.|+.+-..+++|+..+.++.+..
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~ 481 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAII 481 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHH
Confidence 55666677777777888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccchhhHHH-HHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 156 LYLSEMAPYRFRGALNIGFQ-LSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
+|++...||+.|..+.++.. ...++|.-+|.++++.+.+ ..+=|..|.+.++.+++.++...
T Consensus 482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~---~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE---RFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe---eehhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888655 4458888899999999988 56678888877777666555443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=77.24 Aligned_cols=105 Identities=18% Similarity=0.119 Sum_probs=78.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH--hh--HHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF--AQ--AIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~--~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+...+..+..+ .+ +.+.+.+.-.+.+++.|...
T Consensus 257 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 336 (366)
T TIGR00886 257 GLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGN 336 (366)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcccc
Confidence 888999999999999999999999999999999998888777776666655543 22 55554455555555555555
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVG 181 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 181 (355)
+.....+.+..| ++++...++.....++|
T Consensus 337 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 337 GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 566667777776 68899999888766554
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-06 Score=79.71 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhchhHH-------HHHHHHHHHHHHHHHH-----Hh-----hHHHHHHHHHHHhh
Q 041698 82 LTMFTSSLYLAALLSSLVASRVTRQFGRKLS-------MFFGGILFLAGALLNG-----FA-----QAIWMLIVGRLLLG 144 (355)
Q Consensus 82 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~-------l~~~~~~~~~~~~~~~-----~~-----~~~~~l~~~r~l~G 144 (355)
.+++.+...+...+.+++.+++.||+|+|+. +.+|.++.+++.+..+ ++ .+++.++...++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 4556666777788889999999999999873 6777777776654321 21 35777888999999
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC-------ccchHHHHhhhHHHHHHHHH
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG-------GWGWRLSLGGAMVPALIITV 217 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~-------~~~w~~~~~~~~~~~~~~~~ 217 (355)
+|++...+...+++.+..|++.++.+++++.....+|..++..++........ .....+.|...++.+++..+
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v 470 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV 470 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988876632110 01245566665655554444
Q ss_pred Hh
Q 041698 218 GS 219 (355)
Q Consensus 218 ~~ 219 (355)
..
T Consensus 471 ~~ 472 (489)
T PRK10207 471 VM 472 (489)
T ss_pred HH
Confidence 43
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-05 Score=68.52 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=121.6
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhh-hhchhHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhhhcc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTR-QFGRKLSMFFGGILFLAGALLNGF---AQAIWMLIVGRLLLGFGI 147 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~ 147 (355)
.|-||++..+...++..+..|..++....|++.. |.++|+.-.+++...+++..+..+ ..+.+.+-..-++.|++.
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 4456999999999999999999999999999988 678888888888888887755443 467899999999999999
Q ss_pred cccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCC-------CccchHHHHhhhHHHHHHHHHH
Q 041698 148 GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIH-------GGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~-------~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
|.+.....+.+.+...+++-|..+|.|.....++..++..+++.+.+.. ...+|-.+|.+.++..++.+.+
T Consensus 316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888899999999999999999999998876521 2346777777766655544433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-06 Score=76.51 Aligned_cols=137 Identities=15% Similarity=0.039 Sum_probs=103.4
Q ss_pred HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHhhh-cccccccchhhhhhhcCCCC
Q 041698 91 LAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQA----IWMLIVGRLLLGF-GIGFANQSVPLYLSEMAPYR 165 (355)
Q Consensus 91 l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~-~~g~~~~~~~~~~~~~~~~~ 165 (355)
.++..|-.+...+.|+.|||++.+.+.++..+..+..++..| -..+++...+..+ ++-+.......+-+|.+|.+
T Consensus 359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar 438 (538)
T KOG0252|consen 359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR 438 (538)
T ss_pred HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence 334456777888999999999999999999999988887655 2222222222222 22234556667779999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhcC--CCccchHHHHhhhHHHHHHHHHHhccccCChh
Q 041698 166 FRGALNIGFQLSITVGILIANVLNYFFNKI--HGGWGWRLSLGGAMVPALIITVGSMILPDTPN 227 (355)
Q Consensus 166 ~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~ 227 (355)
-|+..-++..+..-+|++++...-.++.+. ....+.+..+++.+...++..+..+++||+.+
T Consensus 439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 999999999999999999998877777651 12357889999998888888787888998864
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7e-05 Score=69.84 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=93.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHH-------------HHHHHHHHH
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAI-------------WMLIVGRLL 142 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~-------------~~l~~~r~l 142 (355)
+.+... .+...+..+...++..+...+.||+|||+.++.+.....++.++.+..... ..+...-+.
T Consensus 326 g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (513)
T KOG0254|consen 326 GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLF 404 (513)
T ss_pred CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHH
Confidence 444333 555666677777888888999999999999999999999999887754221 112222222
Q ss_pred hhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH--Hhc
Q 041698 143 LGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV--GSM 220 (355)
Q Consensus 143 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~ 220 (355)
......+..+....+.+|.+|.+.|+++.++......+...+-...-..+.+ ..++...|...+....+... ..+
T Consensus 405 v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~---~~~~~~~f~~f~~~~~~~~~~fv~~ 481 (513)
T KOG0254|consen 405 IFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITE---ALGIGGTFGYFGGICLLSLIIFVFF 481 (513)
T ss_pred HHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---hccccchHHHHHHHHHHHHHHHheE
Confidence 2223333445555788999999999999888776666555444333333333 11234455555555444444 456
Q ss_pred cccCCh
Q 041698 221 ILPDTP 226 (355)
Q Consensus 221 ~~~e~~ 226 (355)
++||+.
T Consensus 482 ~~pETk 487 (513)
T KOG0254|consen 482 FVPETK 487 (513)
T ss_pred EcccCC
Confidence 789985
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.7e-05 Score=70.57 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=77.7
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhcccccccchhhh
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ--AIWMLIVGRLLLGFGIGFANQSVPLY 157 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~ 157 (355)
...+.+.+.+.++.+++.+++++++||+|+|+.+..+..+.++..++..+.+ +...+++.-++.|++.+...+...++
T Consensus 263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m 342 (460)
T PRK11462 263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM 342 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788889999999999999999999988766555444444333322 23334445566777776666666667
Q ss_pred hhhcCCC-----Ccc--cchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 158 LSEMAPY-----RFR--GALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 158 ~~~~~~~-----~~r--~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
+.|..+. .+| |...+.......+|..+++.+++.+..
T Consensus 343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766542 123 455667677888888888888877764
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=69.76 Aligned_cols=125 Identities=11% Similarity=0.137 Sum_probs=105.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+...+.+..+.++|.+++.++..|+...|.+.+..+...+-++..+++++...+ .+-++.|+..+..+|+..
T Consensus 268 g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~-~~l~~ig~F~simfPTIf 346 (422)
T COG0738 268 GLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL-YALFLIGLFNSIMFPTIF 346 (422)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHhHHHHHHHH
Confidence 8899999999999999999999999999999999999999998888888888898885544 445667999999999999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHh
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLG 206 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~ 206 (355)
+...+..+ + -....+..-+...+|+++-|.+-|++.+ ..+-+..+.
T Consensus 347 slal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d---~~g~~~~~~ 392 (422)
T COG0738 347 SLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIAD---MFGIQLTFL 392 (422)
T ss_pred HHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHH---hhhhHHHHH
Confidence 99999998 3 3455556666778899999999999998 445555555
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00013 Score=65.46 Aligned_cols=258 Identities=10% Similarity=0.026 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH------h--h----HHHHH---HHHHHHhhhcc
Q 041698 83 TMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF------A--Q----AIWML---IVGRLLLGFGI 147 (355)
Q Consensus 83 ~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~--~----~~~~l---~~~r~l~G~~~ 147 (355)
+...-.-.+..++.++..|.+.||..|.+++..+.+..-++..+.+. . + +.+.. .+.-.+.|...
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 33333345667788888999999999999887776655444332221 1 1 11222 22222222211
Q ss_pred ccc-ccchhhhhhhcC------CCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-h
Q 041698 148 GFA-NQSVPLYLSEMA------PYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-S 219 (355)
Q Consensus 148 g~~-~~~~~~~~~~~~------~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~ 219 (355)
... .....+.=.||. +++.+.+..+...-.--+.-+++|++.|.+.. ..+.+....+.++..++.... .
T Consensus 121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t---~~s~~~~~~~i~~~N~~S~~vEy 197 (432)
T PF06963_consen 121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMT---FASPVIAAIFIAGWNLASVFVEY 197 (432)
T ss_pred HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCHHHHHHHHHHHHHHHHHHHH
Confidence 111 111111223442 23444666777777778889999999999987 345666555555555444332 1
Q ss_pred cc---c-cCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHH
Q 041698 220 MI---L-PDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQ 295 (355)
Q Consensus 220 ~~---~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (355)
++ + ...|. +..+++.++.....+. .+..+.+.+........+.-++....|+..++.+-...-+...++ .
T Consensus 198 ~~l~~VY~~~P~-L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalL----Y 271 (432)
T PF06963_consen 198 FLLARVYNSVPA-LAVKKRSSESESSSDE-ESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALL----Y 271 (432)
T ss_pred HHHHHHHHhChH-hcCCCCCccccccccc-cccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHH----H
Confidence 11 1 22222 1111111111000000 000000111111111111112223445555554433332222222 2
Q ss_pred cccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccc
Q 041698 296 FTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFL 350 (355)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~ 350 (355)
++.. .+...+..|+...|+++...+..-....+.++.|+++..++.+|+|..+.
T Consensus 272 ~TVL-sf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~ 325 (432)
T PF06963_consen 272 FTVL-SFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA 325 (432)
T ss_pred HHHh-cCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 2211 22334445556679999999999999999999999999999999986553
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00011 Score=66.46 Aligned_cols=118 Identities=11% Similarity=0.179 Sum_probs=80.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG-----FAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|.+..+.++.......+..+++.+.+.+.++.++++.+.....+..++..+.. ..++++..++..++.++|.+..
T Consensus 250 g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~ 329 (413)
T PRK15403 250 GMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLI 329 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHH
Confidence 88999999998888888889888888876555444443333333333332222 1234444567888889888888
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.+......- ......+|++.++.......+..+++..++++..
T Consensus 330 ~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~ 372 (413)
T PRK15403 330 FPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWF 372 (413)
T ss_pred hHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777764332 1223347999999999888888899998888865
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.4e-06 Score=71.56 Aligned_cols=117 Identities=18% Similarity=0.276 Sum_probs=90.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhh----hchhHHHHHH-HHHHHHHHHHHHHhhHH-----------------
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQ----FGRKLSMFFG-GILFLAGALLNGFAQAI----------------- 133 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr~~l~~~-~~~~~~~~~~~~~~~~~----------------- 133 (355)
|++....+.+--+..+...+.+++.|..+|| +||||.++.. .++..++.++..++.+.
T Consensus 63 Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai 142 (498)
T KOG0637|consen 63 GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAI 142 (498)
T ss_pred CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHH
Confidence 8888888888888888889999999999996 7988766555 45555555666666533
Q ss_pred HHHHHHHHHhhhcccccccchhhhhhhcCCCCcccc-hhhHHHHHHHHHHHHHHHHHHHh
Q 041698 134 WMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGA-LNIGFQLSITVGILIANVLNYFF 192 (355)
Q Consensus 134 ~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~i~~~~ 192 (355)
..++++..+.=++......++-+++.|....+++.+ +.+.+....++|..+|...+.+.
T Consensus 143 ~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 143 VLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 344445555555677788899999999998777766 99999999999999998888754
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.5e-08 Score=89.14 Aligned_cols=136 Identities=22% Similarity=0.131 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH--H---hhH----HHHHHHHHHHhhhccc-ccccchhhh
Q 041698 88 SLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG--F---AQA----IWMLIVGRLLLGFGIG-FANQSVPLY 157 (355)
Q Consensus 88 ~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~---~~~----~~~l~~~r~l~G~~~g-~~~~~~~~~ 157 (355)
...+...++.++...+.||+|||+.++.+..+.+++.+..+ . .++ -...+++-.+...+.+ +..+....+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~ 373 (451)
T PF00083_consen 294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIY 373 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccc
Confidence 33455566777778999999999999999999888887664 1 111 1111222222222222 344566688
Q ss_pred hhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHH-HHHHhccccCCh
Q 041698 158 LSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALI-ITVGSMILPDTP 226 (355)
Q Consensus 158 ~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~e~~ 226 (355)
..|.+|.+.|++..++......++..+++.+...+.+. .+-...+.+.+.+.++ .....+++||+.
T Consensus 374 ~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~~i~~~~~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 374 TAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN---LGGWGVFLIFAGVCLIAIIFVYFFLPETK 440 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccc---ccccccchhhHHHHHHHHhheeEEEeeCC
Confidence 89999999999999999998888888888877666652 2212233343444333 334457789985
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00011 Score=67.05 Aligned_cols=143 Identities=13% Similarity=0.041 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhc-hhHHHHHHHHHHHHHHHHHHHhhH---------------------HHHHHHHH
Q 041698 83 TMFTSSLYLAALLSSLVASRVTRQFG-RKLSMFFGGILFLAGALLNGFAQA---------------------IWMLIVGR 140 (355)
Q Consensus 83 ~~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~r 140 (355)
.+....+.+...+.+++..++.+++| ||++..++.++.+++.+...+.++ .+..++.-
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 34444555555688888899999999 577779998888888877776553 37778888
Q ss_pred HHhhhcccccccchhhhhhhcCCCC--cccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH
Q 041698 141 LLLGFGIGFANQSVPLYLSEMAPYR--FRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 141 ~l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
.+.|+..+..+..-++++++..+++ +.|..+|+.+.+..+..++..+..+.+.+..+ .+-...+.+.++..++..+.
T Consensus 388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g-~~~~~~~~~~gv~~~~aa~~ 466 (477)
T TIGR01301 388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG-GGNLPAFVVGAVAAFVSGLL 466 (477)
T ss_pred HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC-CCCeeHHHHHHHHHHHHHHH
Confidence 9999999999999999999999854 44999999999999999999988887655443 23455677777776665554
Q ss_pred h-ccccCCh
Q 041698 219 S-MILPDTP 226 (355)
Q Consensus 219 ~-~~~~e~~ 226 (355)
. +.+|+++
T Consensus 467 ~~~~~~~~~ 475 (477)
T TIGR01301 467 ALILLPRPR 475 (477)
T ss_pred HHHhCCCCC
Confidence 4 5567654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.7e-05 Score=52.63 Aligned_cols=45 Identities=11% Similarity=0.330 Sum_probs=41.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHH
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILF 120 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 120 (355)
|+|..++|.+.++..+...++++++|.++||+++++.++....+.
T Consensus 31 Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 31 GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 999999999999999999999999999999999988877765543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.3e-05 Score=70.97 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=110.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhch-hHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhhcccccccchhh
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQFGR-KLSMFFGGILFLAGALLNGF--AQAIWMLIVGRLLLGFGIGFANQSVPL 156 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~ 156 (355)
...++....+.++..+++.+.|.+..+++| |+.++++.++..++..+++. .+|....+..-++.|++.|........
T Consensus 349 ~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~ 428 (599)
T PF06609_consen 349 TEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIV 428 (599)
T ss_pred ceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHH
Confidence 356788888899999999999999998876 45556676666654444433 245566678888999999988888888
Q ss_pred hhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcC-----------------------------------------
Q 041698 157 YLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKI----------------------------------------- 195 (355)
Q Consensus 157 ~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~----------------------------------------- 195 (355)
...-..|++.-+.+.++..+.-.+|+.+|..+-.-+.+.
T Consensus 429 ~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~ 508 (599)
T PF06609_consen 429 IAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAA 508 (599)
T ss_pred eeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhh
Confidence 888888888889999999888888888877654332110
Q ss_pred -CC-----------------ccchHHHHhhhHHHHHHHHHHhccccCChhH
Q 041698 196 -HG-----------------GWGWRLSLGGAMVPALIITVGSMILPDTPNS 228 (355)
Q Consensus 196 -~~-----------------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~ 228 (355)
.+ ..++|++|+....++++.+++.+++++..++
T Consensus 509 iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~ 559 (599)
T PF06609_consen 509 IPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKY 559 (599)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHh
Confidence 00 1368999998888888888888888776543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0017 Score=59.40 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=86.0
Q ss_pred CcchhHHHHHHHHH-HHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh--h-----------------------
Q 041698 78 DSETLTMFTSSLYL-AALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA--Q----------------------- 131 (355)
Q Consensus 78 s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~----------------------- 131 (355)
+.+.+..+-....+ ...+...+..+++++++|.+++-+....+.....++++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 66777777775555 555668889999999999999887777776666555542 0
Q ss_pred ------HHHHHHHHHHHhhhccccccc-chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 132 ------AIWMLIVGRLLLGFGIGFANQ-SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 132 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
+.|.+.+..++.-+-.....+ .-..+.+|.++.+|-.|..+++..+.++|.++++.+..++.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444444444443333333 456788999999999999999999999999999998888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.3e-05 Score=53.24 Aligned_cols=57 Identities=16% Similarity=0.343 Sum_probs=50.0
Q ss_pred ccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 297 TGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.....+.-|.+.+.++.|+++.+.|.+.++..+..+++.++.|+++||.++++..+.
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~ 70 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILL 70 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHH
Confidence 344566778888888999999999999999999999999999999999999887653
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00038 Score=63.26 Aligned_cols=122 Identities=13% Similarity=0.165 Sum_probs=107.7
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhh-hhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVAS-RVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
+..++++..+.+...+.......+++++.. .+...+|-|+++.+|+....+...+.+++++.|+......+.++. +..
T Consensus 269 ~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~~ 347 (463)
T KOG2816|consen 269 KAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GIV 347 (463)
T ss_pred eeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cch
Confidence 445599999999888888888888887777 777788999999999999999999999999999999999887775 567
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.+...+.++.+..++++|++.++.....++...++|.+-+.+..
T Consensus 348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 88889999999999999999999999999999999988777643
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.1e-05 Score=68.10 Aligned_cols=131 Identities=11% Similarity=0.016 Sum_probs=83.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhh----hchhHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQ----FGRKLSMFFGGILFLAGA-LLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|+|..+.+.+.+.+.++.+++.+++|+++|| ..+|......+.+..+.. +......+......+-.....+....
T Consensus 305 ~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~ 384 (495)
T KOG2533|consen 305 GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIAT 384 (495)
T ss_pred CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHH
Confidence 7899999999999999999999999999999 677777766666665555 33333333333333334444445556
Q ss_pred ccchhhhhhhcCCCCcc-cchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhh
Q 041698 151 NQSVPLYLSEMAPYRFR-GALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGA 208 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~ 208 (355)
.+......++....+.| -...+....+.+.+.+++|.+-... ..+.+.|...|...
T Consensus 385 ~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~--~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 385 AIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSL--DAPRYGWGAVFYML 441 (495)
T ss_pred HHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccc--cCcchhhhhHHHHH
Confidence 66666777776655444 4445555555555555554432221 12246788877433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00034 Score=65.46 Aligned_cols=135 Identities=23% Similarity=0.248 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHhhhcccccccchhhhhhhcCCCC
Q 041698 89 LYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIW---MLIVGRLLLGFGIGFANQSVPLYLSEMAPYR 165 (355)
Q Consensus 89 ~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~ 165 (355)
............+...|++|||.....+..+..++.++.++..... ...+...+...+.+..+.....+.+|.+|..
T Consensus 359 ~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~ 438 (521)
T KOG0255|consen 359 SGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTV 438 (521)
T ss_pred HHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 3335556666668999999999999999999999999999876543 3556666666666667777799999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHH-HHHHhccccCChh
Q 041698 166 FRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALI-ITVGSMILPDTPN 227 (355)
Q Consensus 166 ~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~e~~~ 227 (355)
.|..+.+...+...+|.+++|.+......... .+.... .+....+ ..+...++||+..
T Consensus 439 ~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~--~~~~~~--~~~~~~l~~~~~~~~lpet~~ 497 (521)
T KOG0255|consen 439 VRNTAVGAISAAARLGSILAPLFPLLLRQMFP--LLGLIL--FGWLALLLGLLSLLLLPETKG 497 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cchHHH--HHHHHHHHHHHHHhcCcccCC
Confidence 99999999999999999999998876654211 222222 2333333 3344477898853
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00084 Score=61.65 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhch--h----H-HHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHhh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGR--K----L-SMFFGGILFLAGALLNGFA---------QAIWMLIVGRLLLG 144 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr--r----~-~l~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G 144 (355)
..+|.++...+...+.+|+.+++=.|.+| | + =+.+|+++.+++.++..++ .+.+++++..++++
T Consensus 309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG 388 (493)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 46677788888888888877777566532 2 1 1667788888877666432 26677899999999
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHH-HHHHHHHHHHHHHHhhcCCC---------ccchHHHHhhhHHHHHH
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLS-ITVGILIANVLNYFFNKIHG---------GWGWRLSLGGAMVPALI 214 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~i~~~~~~~~~---------~~~w~~~~~~~~~~~~~ 214 (355)
+|+-+..|...+.+++..|++.|++.++.+... ..+|..++..++........ ...+.-.|...+..+++
T Consensus 389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 468 (493)
T PRK15462 389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALA 468 (493)
T ss_pred HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999774 36887777777776642110 01355566666665544
Q ss_pred H
Q 041698 215 I 215 (355)
Q Consensus 215 ~ 215 (355)
+
T Consensus 469 ~ 469 (493)
T PRK15462 469 C 469 (493)
T ss_pred H
Confidence 4
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00046 Score=60.97 Aligned_cols=137 Identities=17% Similarity=0.186 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSE 160 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~ 160 (355)
-.+.+.-+-.+...+..+.+.+..+|+..+.=...+.++..++.++.+++++.+.=+++-++.+++.|........+..
T Consensus 60 ~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~- 138 (402)
T PF02487_consen 60 STGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH- 138 (402)
T ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence 3455555666777788888888999988666666677788888999999999999999999999999988888777644
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc-ccC
Q 041698 161 MAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI-LPD 224 (355)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~e 224 (355)
.+++ ...+.+.++.+.++++|+..-..+.+ . ..+-|..+.+...+.++..+.+++ +|.
T Consensus 139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~-g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-L-GLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred hcCc----cccccccCCcChhhHHHHHHHHHHHH-h-CcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5543 35788888999999999887666655 2 245577777666555544444443 443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00025 Score=63.28 Aligned_cols=108 Identities=19% Similarity=0.363 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---------HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCc---ccchhhHHHHHH
Q 041698 111 LSMFFGGILFLAGALLNGFAQ---------AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRF---RGALNIGFQLSI 178 (355)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~ 178 (355)
|+++++.++..+|.++..++. +.+.+.++..+.++|.|+.-|....+++|.+++++ |.+...+++.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 677888889999988855442 23678899999999999999999999999998763 467778899999
Q ss_pred HHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc
Q 041698 179 TVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 179 ~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (355)
++|..++..+.+++.+ +++|.+.|.+.++..++.++.++.
T Consensus 82 n~G~~~~~~~~~~i~~---~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQ---NYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHH---CS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhcc---ccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999987 678999999888776666555433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0002 Score=61.72 Aligned_cols=122 Identities=19% Similarity=0.184 Sum_probs=108.3
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 73 QYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFG--RKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
+.+|.++.|.|-+.+...++..+.+....+..||.. -+-.+..++.+..-..++.+.+++...+.++-.+-.+..+..
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~ 369 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASV 369 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999987 677777777777777777788888888999999999988888
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.+....++....|.++||.+.|+......++-++||+++|.+..
T Consensus 370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 99999999999999999999999999999999999999988765
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00034 Score=57.41 Aligned_cols=86 Identities=15% Similarity=0.244 Sum_probs=66.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+....+++.+.-+.+-..++...+.|-++|+.|||+.-+.-++...++++ .-.++.|-.++++|.+-|++.+..+.+..
T Consensus 68 gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFE 146 (454)
T KOG4332|consen 68 GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFE 146 (454)
T ss_pred CccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHH
Confidence 77788888888777777888888899999999999976554444444332 33567899999999999999888887777
Q ss_pred hhh-hhcC
Q 041698 156 LYL-SEMA 162 (355)
Q Consensus 156 ~~~-~~~~ 162 (355)
++. .|.-
T Consensus 147 sWliaEHn 154 (454)
T KOG4332|consen 147 SWLIAEHN 154 (454)
T ss_pred HHHHHHhh
Confidence 654 4544
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00039 Score=59.14 Aligned_cols=246 Identities=11% Similarity=0.088 Sum_probs=147.2
Q ss_pred HHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchh
Q 041698 92 AALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALN 171 (355)
Q Consensus 92 ~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~ 171 (355)
.+.+.-.+.=.+.|..-.|+++++-.+.......+.-+.++.+.+=+.-++.|...+ ...+.++++-+..+++++-++.
T Consensus 54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt 132 (433)
T KOG3810|consen 54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVT 132 (433)
T ss_pred HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHH
Confidence 344555555568999999999998888888888888899999999999999998754 5667788898999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCcc
Q 041698 172 IGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDV 251 (355)
Q Consensus 172 ~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (355)
+...++.-.|...|..++-.+.... ..++...-.+......+......++|..+|...-+.+.++.. ..+..+.+..
T Consensus 133 ~y~RaA~L~g~~~g~vlaQlLvs~~-~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~--v~~~e~~~~~ 209 (433)
T KOG3810|consen 133 GYCRAAFLVGKFVGSVLAQLLVSLE-TLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKIS--VGDLEEMNPQ 209 (433)
T ss_pred HHhHHHHHHHhHHHhHHHHHHhhhc-ccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccce--eccchhcCcc
Confidence 9999999888888888887776533 245555555555555555566677887765443333222211 0111111100
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcC--CCCcHHHHHHHHHHH
Q 041698 252 EEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIG--FGSDASLMSAVITGI 329 (355)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~ 329 (355)
....+-+... -..-...+.+..+.+ .+....+.+.....+++-+.+|...+-++.. -.....|..=++..+
T Consensus 210 ~~~~~~l~~~---~~~l~~~l~~~y~np----~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tl 282 (433)
T KOG3810|consen 210 ASYMSYLRGA---FVLLWRDLQECYSNP----RLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTL 282 (433)
T ss_pred chhhHHHHHH---HHHHHHHHHHHhcCc----hhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHH
Confidence 0000000000 000001122222222 1222223333333455566667666666543 111223455566677
Q ss_pred HHHHHhhhhhheecccCCc
Q 041698 330 VNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 330 ~~~~~~~~~g~l~d~~g~r 348 (355)
.++++.+..|.+.-...|+
T Consensus 283 LGa~~~~~~g~l~i~w~r~ 301 (433)
T KOG3810|consen 283 LGAIAALAAGYLNINWNRW 301 (433)
T ss_pred HHHHHHHHHHheeeccchh
Confidence 7888888999886655554
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0026 Score=59.65 Aligned_cols=134 Identities=10% Similarity=0.029 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhchh--------H-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 85 FTSSLYLAALLSSLVASRVTRQFGRK--------L-SMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 85 ~~s~~~l~~~~~~~~~g~l~dr~Grr--------~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+++...++..+|-+..|.++...-+| + .+.+..+ ..++.++.++.-....+.+.-++.|++.|..++...
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~ 474 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA 474 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence 67778888888888888777222121 2 2333333 555666666554336899999999999999999999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHH-HHHHHHhhcCCC----------ccchHHHHhhhHHHHHHHHHHhc
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIA-NVLNYFFNKIHG----------GWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~-~~i~~~~~~~~~----------~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
..++|.|- |+-|+...+...+..+|..+- ..+.|.+.+... ..=+|..|++.+.++++..+...
T Consensus 475 ~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~ 549 (591)
T PTZ00207 475 LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITST 549 (591)
T ss_pred HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence 99999998 888999999888888888776 456665543211 12268888888888777666543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.023 Score=51.19 Aligned_cols=118 Identities=12% Similarity=0.156 Sum_probs=88.0
Q ss_pred CCcchhHHHHHHHHH-HHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh------------------------
Q 041698 77 YDSETLTMFTSSLYL-AALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ------------------------ 131 (355)
Q Consensus 77 ~s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~------------------------ 131 (355)
.+++.+.++-+...+ +..+..++.+++.+++-|.+++-+.+..+....+++++.=
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 367788888888888 7789999999999999999999888888877777776531
Q ss_pred --------HHHHHHHHHHHhhhccccccc-chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 132 --------AIWMLIVGRLLLGFGIGFANQ-SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 132 --------~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
+.|...+...+.=+-.+.... .-.....|.+..+|-.|..++++.+.+++..++..+..++.+
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 113333333333332222222 334556788888888999999999999999999999998876
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.017 Score=54.17 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=109.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhhH----------------------
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGALLNGFAQA---------------------- 132 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~---------------------- 132 (355)
|.+...+.-.++.+.-......++++.++|-| ||-+++.++.++..++.++...+..
T Consensus 69 ~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s 148 (571)
T KOG1237|consen 69 HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPS 148 (571)
T ss_pred ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcc
Confidence 77778888888888888889999999999975 9999999999999988765544321
Q ss_pred ---HHHHHHHHHHhhhcccccccchhhhhhhcCC---CCc---ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHH
Q 041698 133 ---IWMLIVGRLLLGFGIGFANQSVPLYLSEMAP---YRF---RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRL 203 (355)
Q Consensus 133 ---~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~---~~~---r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~ 203 (355)
...+..+.-+..+|.|+.-+....+-+|-++ +++ +...+.++....++|..++..+..+..+ +.+|.+
T Consensus 149 ~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~---~~~w~l 225 (571)
T KOG1237|consen 149 KLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQD---NVGWKL 225 (571)
T ss_pred hHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhh---ccccee
Confidence 1356666677888999999999999999988 322 2467889999999999999998888876 568988
Q ss_pred HHhhhHHHHHHHHHH
Q 041698 204 SLGGAMVPALIITVG 218 (355)
Q Consensus 204 ~~~~~~~~~~~~~~~ 218 (355)
-|-+..+.-.+++++
T Consensus 226 gf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 226 GFGIPTVLNALAILI 240 (571)
T ss_pred eccHHHHHHHHHHHH
Confidence 888776665444433
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.01 Score=51.51 Aligned_cols=137 Identities=20% Similarity=0.221 Sum_probs=84.9
Q ss_pred HhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhh----
Q 041698 30 AAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTR---- 105 (355)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d---- 105 (355)
..+-+...|...+..+ . +|-+++.- |.|.++.+...-++. -.---+++.++.|
T Consensus 36 Ll~LYllQGiP~GL~~-~--iP~lL~ak------------------~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~ 92 (510)
T KOG3574|consen 36 LLFLYLLQGIPLGLIG-A--IPLLLQAK------------------GVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYS 92 (510)
T ss_pred HHHHHHHcCCchhHhh-h--hHHHhcCC------------------Ccchhhhhhhhhhhh--HHHHHHHHHhhhHHHHH
Confidence 3334577888777776 2 67666643 777777665543322 1123577888888
Q ss_pred -hhchhHHHHH-HHHHHHHHHHHHHH-----------hhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhh
Q 041698 106 -QFGRKLSMFF-GGILFLAGALLNGF-----------AQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNI 172 (355)
Q Consensus 106 -r~Grr~~l~~-~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 172 (355)
|+||||.-++ +..+.+......+. .++...+....++.-+.++.-..+.-.+.-.+..+++.|-+..
T Consensus 93 k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST 172 (510)
T KOG3574|consen 93 KRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYAST 172 (510)
T ss_pred HhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhH
Confidence 9999876332 23333333322222 1344444445555566666666677777777888888898888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041698 173 GFQLSITVGILIANVLN 189 (355)
Q Consensus 173 ~~~~~~~~G~~~~~~i~ 189 (355)
....+.+.|..++..+-
T Consensus 173 ~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 173 CQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHHHhhhHHhhccee
Confidence 88888888888776543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0017 Score=59.02 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=109.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHhhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF----------AQAIWMLIVGRLLLGF 145 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~G~ 145 (355)
|.|....+.+..+..++..+|..+..+...+..-|+++.++.++.++..+.-.. .++.+..+.--++..+
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 588999999998899999999999999988889999998888877766653221 1222333444455666
Q ss_pred cccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC-----ccchHHHHhhhHHHHHHHHHHhc
Q 041698 146 GIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG-----GWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
..+..+.+...+++|..|+..-|...++.....++|..++..++..+.+..+ ..+-.+..++.....++.+....
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~ 410 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF 410 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 6666677778889999999999999999999999999999999988876432 11222334444444444444455
Q ss_pred cccCCh
Q 041698 221 ILPDTP 226 (355)
Q Consensus 221 ~~~e~~ 226 (355)
++|++.
T Consensus 411 lLp~~~ 416 (433)
T PF03092_consen 411 LLPPQK 416 (433)
T ss_pred HcCCCc
Confidence 677654
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.06 Score=50.18 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=70.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHH---HHHHH----HHhhHH-HHHHHHHHHhhhcc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLA---GALLN----GFAQAI-WMLIVGRLLLGFGI 147 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~---~~~~~----~~~~~~-~~l~~~r~l~G~~~ 147 (355)
|-+..+.+.+.+++.+|.++|+.+++++.++.-++.. .+-..+..+ +..+. ++.... ..+...-++.++..
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999988754333322 221111111 11111 111111 22233445667777
Q ss_pred cccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 148 GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
|+..|....+..+... ++-++..+-.+....+|+++|.++.+++.-
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 8777777766655332 223566677777788888888877777653
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.02 Score=51.60 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=93.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH---h---h----HHHHHHHHHHHhhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF---A---Q----AIWMLIVGRLLLGF 145 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~---~----~~~~l~~~r~l~G~ 145 (355)
|++...+|..-+...+....+.+...++.+|+|..|.=+++......+..++.. . + +...++.+-++.-+
T Consensus 289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~ 368 (432)
T PF06963_consen 289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI 368 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988888877665554433332 1 1 34455555555556
Q ss_pred cccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 146 GIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
|.=++..+..-++.|..|+++||...+.-....++-.++...++-.+.+
T Consensus 369 GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~ 417 (432)
T PF06963_consen 369 GLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR 417 (432)
T ss_pred HHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 6666777888899999999999999999999999988888777655443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.027 Score=50.91 Aligned_cols=139 Identities=19% Similarity=0.208 Sum_probs=98.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhchh-------HHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHH
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQFGRK-------LSMFFGGILFLAGALLNGFA----------QAIWMLIVGRLL 142 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l 142 (355)
-..++.++...+..++.+++..++-.+.++| .-+-+++.+.+.+.++.... .+.++++...++
T Consensus 324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l 403 (498)
T COG3104 324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL 403 (498)
T ss_pred cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence 3446667777777777777777777774443 33556666666666555543 267899999999
Q ss_pred hhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc---CCCccchHHHHhhhHHHHHHHHHH
Q 041698 143 LGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK---IHGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 143 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~---~~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
+++|+=+..|+..+++....|++-.+..++.+......|..++..+++.... ......-...|+..+..+++....
T Consensus 404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~ 482 (498)
T COG3104 404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGIL 482 (498)
T ss_pred HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999988999999998888888888777773221 000123444566555555544433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.023 Score=51.35 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=35.7
Q ss_pred HhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhh
Q 041698 142 LLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFN 193 (355)
Q Consensus 142 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~ 193 (355)
+.-+-++---.++-.+.-.+.++++++.+......+.+.|..++..+--.+.
T Consensus 127 ~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 127 ILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred HHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence 3333334444555666667777888999999999888888888766544443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.037 Score=50.32 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCc---cch--HHHHh
Q 041698 132 AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGG---WGW--RLSLG 206 (355)
Q Consensus 132 ~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~---~~w--~~~~~ 206 (355)
.++..++.-++.|++.+..+.....+.+. +|++ .+..+..+.+++++++.++.-.......+ ..+ ...|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 57777788888999999888888888774 5543 34555566666666655443322111101 122 22333
Q ss_pred hhHHHHHHHHHHhccccCChh
Q 041698 207 GAMVPALIITVGSMILPDTPN 227 (355)
Q Consensus 207 ~~~~~~~~~~~~~~~~~e~~~ 227 (355)
+..++.+++++....++..|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 444444445555555666664
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.16 Score=44.97 Aligned_cols=91 Identities=12% Similarity=0.091 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCC--CccchHHHHhhhH
Q 041698 132 AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIH--GGWGWRLSLGGAM 209 (355)
Q Consensus 132 ~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~--~~~~w~~~~~~~~ 209 (355)
.++..++.-.+.+.+.|..+.......++. |++.-. ....+.++++.+..+..-...... ...+=...|.+..
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytq----avm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQ----AVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHH----HHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 567777788888999888888888777765 444322 223334444444333322221111 1123333444444
Q ss_pred HHHHHHHHHhccccCChh
Q 041698 210 VPALIITVGSMILPDTPN 227 (355)
Q Consensus 210 ~~~~~~~~~~~~~~e~~~ 227 (355)
++.+++.++...+|..|-
T Consensus 191 ~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHhhcchH
Confidence 444445555555676664
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0036 Score=56.69 Aligned_cols=79 Identities=16% Similarity=0.311 Sum_probs=58.0
Q ss_pred hhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhH
Q 041698 32 MGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKL 111 (355)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~ 111 (355)
+.+++.+..++.+-+. ++.|.++. |++..+.|.+...--+..+++.|++|+++||+-+||
T Consensus 18 ~f~~~~~~~~g~l~pl--l~vy~kQL------------------Gl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r 77 (618)
T KOG3762|consen 18 LFYLFFGARFGSLFPL--LAVYFKQL------------------GLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRR 77 (618)
T ss_pred eeeeeeeecccccchH--HHHHHHHc------------------CCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 3445555555555444 56666665 999999999999999999999999999999998665
Q ss_pred HHHHH-HHHHHHHHHHHHHh
Q 041698 112 SMFFG-GILFLAGALLNGFA 130 (355)
Q Consensus 112 ~l~~~-~~~~~~~~~~~~~~ 130 (355)
.++++ ++.....+++..+.
T Consensus 78 ~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 78 PLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred chhHHHHHHHHHHHHheeec
Confidence 55554 55555555655554
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.037 Score=49.19 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=83.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH--H---HHHHHHHhhHHHHHHHHHHHhhhccccccc
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFL--A---GALLNGFAQAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~--~---~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
..++..+...+|.+|-.++.--...+ |+ |+..+.+.+... + .....-+.++.|..++.-+..|+..|..+.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 45677888888888877765433222 33 444333332222 2 222333568899999999999999999999
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
-....+.|-.++++|..+++....+.++|..++.+++..+.+
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998877653
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.078 Score=47.36 Aligned_cols=149 Identities=15% Similarity=0.021 Sum_probs=88.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc-hhHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFG-RKLSMFFGGILFLAGALLNGFAQ----AIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~ 150 (355)
|.+....|++.....++.++++.+.|.+.||.. -|.++++......++.......+ +.+.+...-.+.|++....
T Consensus 297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~ 376 (480)
T KOG2563|consen 297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGY 376 (480)
T ss_pred cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCC
Confidence 556678899999999999999999999999986 46666666666666643322222 2344445556677777888
Q ss_pred ccchhhhhhhcC-CCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHH-HHHHHHHhccccCC
Q 041698 151 NQSVPLYLSEMA-PYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVP-ALIITVGSMILPDT 225 (355)
Q Consensus 151 ~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~e~ 225 (355)
.|...-+-.|.. |..+ +...|+......+-..+-..+-+...+..+..+|.....+.... .++..+...+++|+
T Consensus 377 ~Pig~ElgvE~TyPv~E-~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 377 LPIGFELGVETTYPVAE-GTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred CCcceeeeeeeccccCC-cccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence 898888888775 5555 44445444443333334444444444322223444433333333 33333333444444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.31 Score=44.29 Aligned_cols=104 Identities=22% Similarity=0.299 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhh---hchhHHHHHHHHHHHHHHHHHHHh------------------hHHHHHHHHHHHhh
Q 041698 86 TSSLYLAALLSSLVASRVTRQ---FGRKLSMFFGGILFLAGALLNGFA------------------QAIWMLIVGRLLLG 144 (355)
Q Consensus 86 ~s~~~l~~~~~~~~~g~l~dr---~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G 144 (355)
.-...+|..++..+.+.+++| +||++.+.++..+..++.++.-.. +++...++.-++.|
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G 364 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG 364 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence 333445566666677777754 799999999998888888776542 25667788889999
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNY 190 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~ 190 (355)
++-+......+.++...+ +++|..+.++...-..++..++-....
T Consensus 365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999 567888888777777777666544433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.016 Score=55.57 Aligned_cols=68 Identities=12% Similarity=0.000 Sum_probs=53.7
Q ss_pred HHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 287 AVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
...+..+.+...........+.+.++++++..+.|++.+...++..++.++.+++.||.+||+.+.+|
T Consensus 37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g 104 (633)
T TIGR00805 37 LLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIG 104 (633)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEec
Confidence 33334444444444555566777788999999999999999999999999999999999999988765
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.058 Score=49.03 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=48.4
Q ss_pred cchHhcHHHHHHhcCCCCcH-HHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 300 NVIMFYAPVLFNTIGFGSDA-SLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
....+..|++.+++|++.++ .+.+......+..+..+..|+++||+|.|+++.++
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~ 98 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQ 98 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 34556677888899999999 99999999999999999999999999999987653
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.054 Score=49.32 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=56.8
Q ss_pred HHHHHHH-HHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHH
Q 041698 134 WMLIVGR-LLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVP 211 (355)
Q Consensus 134 ~~l~~~r-~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~ 211 (355)
+.+++.+ ++.|++.-.......++-+|...+++++...+++......+..++|++....-. ..|.|++..+.+..
T Consensus 388 ~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~---~~g~~~v~~~~~~~ 463 (488)
T KOG2325|consen 388 ILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT---LSGPRPVWIILLCL 463 (488)
T ss_pred hhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH---hcCccHHHHHHHHH
Confidence 4445554 456777766677788888999999999999999999999999999999888776 34555555444333
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.064 Score=36.07 Aligned_cols=51 Identities=12% Similarity=-0.016 Sum_probs=43.3
Q ss_pred hHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 302 IMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
++-..|.+.++.++|..+.+++.+.+.++.++|.+...++.++.++++.+.
T Consensus 11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~ 61 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLR 61 (85)
T ss_pred HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 344678888999999999999999999999999999999988866665543
|
Note that many members are hypothetical proteins. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.1 Score=43.37 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=50.2
Q ss_pred HHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 294 QQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
......+.+..|.|.+.+++|++.++...+.....++..+| ++.|.+.|+.|.+..+.+|
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG 72 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIG 72 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHH
Confidence 33456778889999999999999999888888888888764 8889999999998877655
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.16 Score=44.10 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=38.6
Q ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 310 FNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
.+++|++..+.+.++....+...+...+.|.+.||+|||+.-+
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl 103 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACL 103 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3679999999999999999999999999999999999998644
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.21 Score=44.87 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=45.4
Q ss_pred cchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 300 NVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
+.+..-.+-..+.+|.++...|++.....+...++.+++|++.||++|++++.+|
T Consensus 50 ~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG 104 (493)
T KOG1330|consen 50 YTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVG 104 (493)
T ss_pred hhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeH
Confidence 3333334444455899999999999999999999999999999999999998765
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.39 Score=43.16 Aligned_cols=116 Identities=13% Similarity=0.015 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSE 160 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~ 160 (355)
.-.|-..++.+...+.+....+++||+|-|+.+..+...+.++..+.+..++.+....-+-..|+-.+....+-...+++
T Consensus 333 ~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~ 412 (498)
T KOG0637|consen 333 MGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALAL 412 (498)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHH
Confidence 33444556778888999999999999998888877777788888888888888888888888886555554443333322
Q ss_pred cC---------------------CCC--cccchhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 041698 161 MA---------------------PYR--FRGALNIGFQLSITVGILIANVLNYFFNKIH 196 (355)
Q Consensus 161 ~~---------------------~~~--~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~ 196 (355)
+. ... -+|...++.++...+-.++.....|.+.+..
T Consensus 413 y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~ 471 (498)
T KOG0637|consen 413 YAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLF 471 (498)
T ss_pred HHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhc
Confidence 11 111 1355666677776666666666666665543
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.064 Score=46.50 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCc--cchHHHHhhhHHHHHHHHHH
Q 041698 141 LLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGG--WGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 141 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~ 218 (355)
++.|.+.+..+.....+.+. +|++. ......+.++++++..++.-......++ .+-...|.+..++.+++++.
T Consensus 5 ~~~~~~~~~~q~s~~glas~-~p~~y----~~a~~~Gq~~aGv~~s~l~ii~~~~~~~~~~~a~~yF~~a~~i~i~~~~~ 79 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASL-FPPKY----TQAVMIGQGLAGVIVSLLRIITKASGSDVKTSAFIYFIIAVLIVILCIIL 79 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhc-CCHHH----HHHHHhhccHHHHHHHHHHHHHHHhhhccchhhhhHHHHHHHHHHHHHHH
Confidence 45677777777777777775 55543 3334445555555544333311111111 12222333344444444445
Q ss_pred hccccCChh
Q 041698 219 SMILPDTPN 227 (355)
Q Consensus 219 ~~~~~e~~~ 227 (355)
++.++..|.
T Consensus 80 ~~~l~~~~~ 88 (309)
T PF01733_consen 80 YFILPRSPF 88 (309)
T ss_dssp ---------
T ss_pred HHHhccChH
Confidence 555665553
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.22 E-value=4.6 Score=36.14 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=78.5
Q ss_pred CcchhHHHHHH-HHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHhhhcccc
Q 041698 78 DSETLTMFTSS-LYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG-------FAQAIWMLIVGRLLLGFGIGF 149 (355)
Q Consensus 78 s~~~~~~~~s~-~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-------~~~~~~~l~~~r~l~G~~~g~ 149 (355)
++...-.+... +++.-.+|.+.+.++-+.=.|+.......=+..+-.+..+ +-.+-+.+++...+.|+.+|-
T Consensus 280 ~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY 359 (406)
T KOG1479|consen 280 GDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY 359 (406)
T ss_pred chhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence 34455555566 8888999977777766654444333333333333333322 235667888999999999999
Q ss_pred cccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 041698 150 ANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNY 190 (355)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~ 190 (355)
.....+.+..+-.+++++..+..+.......|...|..++.
T Consensus 360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~ 400 (406)
T KOG1479|consen 360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW 400 (406)
T ss_pred HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999888888888887888777766543
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.75 E-value=7.9 Score=33.60 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcC
Q 041698 89 LYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMA 162 (355)
Q Consensus 89 ~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~ 162 (355)
..+.-+.++++.+.+..++|-|.++.++....... +..-+-+.+..++-.-...|++.+..+..--+|+++.-
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 44556667777779999999999998887776552 22334467888889999999999999887777776554
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.41 E-value=3.8 Score=34.49 Aligned_cols=133 Identities=17% Similarity=0.122 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchh--HHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHhhhcccccc
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRK--LSMFFGGILFLAGALLNGFAQ-------AIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~ 151 (355)
--|.+.+.+.++.++|+-+..++..|-..| ..+.+..+..++...+..... +...-+++.++.-.+.|..+
T Consensus 283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw 362 (454)
T KOG4332|consen 283 PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW 362 (454)
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence 348899999999999999998888775544 555555555554443332221 22233555566666788899
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC-ccchHHHHhhhHHHHHHHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG-GWGWRLSLGGAMVPALIITV 217 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~ 217 (355)
|..+.+-+...|++.|...+.++..-.++-..++-. -.+..+ ..+-|..|-++.+...+..+
T Consensus 363 PSimkmRsqyIPEearstimNfFRvPLnifvClvLy----nlh~~~~p~~tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLY----NLHVDAFPTTTRNMFGICSAFLFVASI 425 (454)
T ss_pred hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhe----ecccccCccccchhhhhhHHHHHHHHH
Confidence 999999999999999999998887665544333211 111111 23556777776666555433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=89.09 E-value=3.8 Score=37.47 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchh--HHHHH--HHHHHHHHHHHHHH---------hhHHHHHHHHHHHhhhcc
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRK--LSMFF--GGILFLAGALLNGF---------AQAIWMLIVGRLLLGFGI 147 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr--~~l~~--~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~ 147 (355)
..-.+...++++-.+|..+..+.. .-++| .+++. .-+++.-..++|.. -++-+..++..++.|+.+
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 445566777788888877554331 11222 33322 22233333333332 246677778899999999
Q ss_pred cccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHh
Q 041698 148 GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFF 192 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~ 192 (355)
|-.......+..+..++++|..+..+...+..+|..+|..++..+
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888776544
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=88.36 E-value=1.2 Score=36.93 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=36.1
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHhhcC--CCccchHHHHhhhHHHHHHHHHHhccc
Q 041698 165 RFRGALNIGFQLSITVGILIANVLNYFFNKI--HGGWGWRLSLGGAMVPALIITVGSMIL 222 (355)
Q Consensus 165 ~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (355)
|+|+..+.+...+.++|.++.-..-..-.+. ....+|++++.+.+++.++-++....+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888888888888765432111010 012469999988887766655554433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=87.97 E-value=9.4 Score=34.41 Aligned_cols=98 Identities=13% Similarity=0.056 Sum_probs=71.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMF--FGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~--~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+...-|.+-++..+...++++..|++..++.+-.-+. ...++.+...+++++.+|.|...++.++.+.......+...
T Consensus 283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~ 362 (412)
T PF01770_consen 283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS 362 (412)
T ss_pred CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455688888899999999999999977777754443 33444455556677889999999999888877777777777
Q ss_pred hhhhhcCCCCcccchhhHHH
Q 041698 156 LYLSEMAPYRFRGALNIGFQ 175 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~ 175 (355)
.-++.....+.-+...|+..
T Consensus 363 ~qIA~~l~~e~yaLVFGiNt 382 (412)
T PF01770_consen 363 FQIAKNLSEERYALVFGINT 382 (412)
T ss_pred HHHHHhccccceeeeeeeHH
Confidence 66776665554466666554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.63 E-value=1.8 Score=37.04 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=77.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhh
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYL 158 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~ 158 (355)
.|.-|....|.+|..++.--....--++ =--.++..-.+++.+...+..+.+++|...+.-+.-|+-.|..++-..--+
T Consensus 288 sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i 367 (409)
T KOG3880|consen 288 SQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNI 367 (409)
T ss_pred hcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHH
Confidence 3566777777776544322211111110 001122223344444556667788999988888999998888888777777
Q ss_pred hhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhh
Q 041698 159 SEMAPYRFRGALNIGFQLSITVGILIANVLNYFFN 193 (355)
Q Consensus 159 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~ 193 (355)
.+-.++++|-.+++....+-.+|..++.+++-.+-
T Consensus 368 ~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh 402 (409)
T KOG3880|consen 368 HKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH 402 (409)
T ss_pred hhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence 77778899999999999999999999888876653
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.92 E-value=1 Score=38.51 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhc
Q 041698 82 LTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEM 161 (355)
Q Consensus 82 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~ 161 (355)
.|.+.-+-.+-..+..+.+....||+---.-..+..++.+.+.++.+++++.++-+.+-.+..++.|.-......+-+.
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~- 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR- 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-
Confidence 3444445556667777778888888643333344566777778888999999999999999999888777665555333
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc
Q 041698 162 APYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 162 ~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (355)
++ ....+.+..+.+.++++|..--.++.+.. +.+-|-..++...+.++.....++
T Consensus 143 Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~-~~spk~Tlli~l~lP~lfa~~yf~ 197 (409)
T KOG3880|consen 143 YP----SIVIAGWSSGTGGAGLIGASSYAFLTSWA-NLSPKSTLLIMLFLPALFAFAYFF 197 (409)
T ss_pred CC----CceeccccCCCCcchhhhhhHHHHHhhhc-CCChhhHHHHHHHHHHHHHHHHHh
Confidence 32 23445566666666777766555555422 245566666555554444444443
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.93 E-value=6.8 Score=27.42 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHH
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGAL 125 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~ 125 (355)
....-.++-+++..+.....||+.||| |.++..++..++.+.+.-
T Consensus 43 ~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG 88 (116)
T COG5336 43 AQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAG 88 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 344555667777788888889999996 777776666655555443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=82.57 E-value=41 Score=31.19 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=49.8
Q ss_pred HHhhhcccccccchhhhhhhcCC-CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHH
Q 041698 141 LLLGFGIGFANQSVPLYLSEMAP-YRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALI 214 (355)
Q Consensus 141 ~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~ 214 (355)
++.|+.....+..--..+.+.+| +++|+..++-+....++..++..++++.+.+ ..||.....+.-++.++
T Consensus 274 i~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~---~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 274 IAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIR---KYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHH
Confidence 44566666666666677778776 4557888888888888888777777777777 67898776655444433
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.94 E-value=17 Score=31.94 Aligned_cols=85 Identities=18% Similarity=0.059 Sum_probs=61.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH----HHH-HH----hhHHHHHHHHHHHhhhc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGA----LLN-GF----AQAIWMLIVGRLLLGFG 146 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~----~~~-~~----~~~~~~l~~~r~l~G~~ 146 (355)
|-+.-|.+.+.+.|....++|+...-++.|.--.-+.+..-.++..++. ++. .| .++-+.+.++-++.|.-
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L 118 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL 118 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 5577899999999999999999999999886544444333333333221 111 23 35678888999999999
Q ss_pred ccccccchhhhhhh
Q 041698 147 IGFANQSVPLYLSE 160 (355)
Q Consensus 147 ~g~~~~~~~~~~~~ 160 (355)
.|...|..+.++..
T Consensus 119 VG~EiPL~mrml~~ 132 (508)
T COG4262 119 VGAEIPLLMRMLQR 132 (508)
T ss_pred HhcchHHHHHHHHH
Confidence 99999999888776
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.34 E-value=14 Score=30.71 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=12.4
Q ss_pred hhhhheecccCCccccccCC
Q 041698 336 MVSIYGVDKWGRRFLFLEGG 355 (355)
Q Consensus 336 ~~~g~l~d~~g~r~~~~~~~ 355 (355)
+.+-.++.|+..|++.+.|+
T Consensus 258 igGk~lAskIS~rtVt~~gg 277 (294)
T KOG2881|consen 258 IGGKYLASKISVRTVTLIGG 277 (294)
T ss_pred hhhHHHhhhheeEEEEEecc
Confidence 33335667777777776654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=80.85 E-value=7.9 Score=28.06 Aligned_cols=47 Identities=21% Similarity=0.370 Sum_probs=34.3
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH
Q 041698 79 SETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGAL 125 (355)
Q Consensus 79 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 125 (355)
....+...+...++..++..+.+.+.|..|.+..+.+......++.+
T Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (141)
T TIGR00880 86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFI 132 (141)
T ss_pred hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 34566677778888899999999999998887776665555444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 355 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 8e-29 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 9e-05
Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 4/143 (2%)
Query: 98 LVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLY 157
A + + G K ++ G + + + FA + +++ + L F + F Y
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336
Query: 158 LSEMAPYRFRG-ALNIGFQLSITVGILIANVLN-YFFNKIHGGWGWRLSLGGAMVPALII 215
++ RF + F + ++ +VL + I + + A+ LI
Sbjct: 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396
Query: 216 TVGSMILPDTPNSIIERGRHEEA 238
+ P S++ R +E A
Sbjct: 397 VF--TLSGPGPLSLLRRQVNEVA 417
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 79 SETLTMFTSSLYLAAL-LSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLI 137
E YL +S L ++ + GR+ + G +F+ L+ ++ +LI
Sbjct: 33 REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLI 92
Query: 138 VGRLLLGFGIG 148
+ G G G
Sbjct: 93 AASAMQGMGTG 103
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 8e-04
Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 83 TMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAI---WMLIVG 139
+ S+ Y + + A + ++ K + G L+ GA L A I + +VG
Sbjct: 64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVG 123
Query: 140 RLLLGFGIGFANQSVPLYLSEMAPYRFRGA-LNIG---FQLSITVGILIANVL 188
++ G+G + +++ + P LN+ + ++ L
Sbjct: 124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 355 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.97 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.93 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.85 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.81 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.5 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.42 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.37 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.36 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.24 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.98 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.83 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=278.68 Aligned_cols=317 Identities=28% Similarity=0.528 Sum_probs=255.2
Q ss_pred hhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhh
Q 041698 21 PYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVA 100 (355)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~ 100 (355)
++.+.++++++++.+++|||.++++.+ +|.+.+++.... ..+.+.+..+.+++.+++.+|..+|++++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~--~~~~~~~~~~~~----------~~~~~~~~~~~g~~~s~~~~G~~iG~~~~ 75 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFVAPQ----------NLSESAANSLLGFCVASALIGCIIGGALG 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGT--HHHHHHHHTGGG----------CCCHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCC----------CCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778889999999999999877 777777663211 11114456788999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHH------------------HhhHHHHHHHHHHHhhhcccccccchhhhhhhcC
Q 041698 101 SRVTRQFGRKLSMFFGGILFLAGALLNG------------------FAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMA 162 (355)
Q Consensus 101 g~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~ 162 (355)
|+++||+|||++++++.+++.+++++++ +++|+++++++|+++|++.|+..+....+++|+.
T Consensus 76 G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~ 155 (491)
T 4gc0_A 76 GYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA 155 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998 4789999999999999999999999999999999
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC-----ccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHH
Q 041698 163 PYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG-----GWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEE 237 (355)
Q Consensus 163 ~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 237 (355)
|+++|++..++...+..+|.++++.++.......+ ..+||+.+.+..++.++.++..+++||+|+|+..+++.++
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~ 235 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQ 235 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHH
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhH
Confidence 99999999999999999999999998887764321 3579999999888888888888899999999999999999
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCC
Q 041698 238 AREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGS 317 (355)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 317 (355)
+.+.+++...+++.+++..+..+..+.+++.. .... ....++.........+.+..+.+.+..+.+.+.+..+.+.
T Consensus 236 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (491)
T 4gc0_A 236 AEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLL---MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST 311 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHH---HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH
T ss_pred HHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHH---HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc
Confidence 99988877654433333322222222221111 1111 1223445566666677777888888899999998888888
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 318 DASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
..........++..+++.++++++.||+|||+.++.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~ 347 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII 347 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc
Confidence 888888888899999999999999999999987654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-31 Score=237.27 Aligned_cols=276 Identities=11% Similarity=0.119 Sum_probs=208.3
Q ss_pred HHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhh
Q 041698 24 LVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRV 103 (355)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l 103 (355)
+.....+++..+..+++....++. +|.+.+++ |++..+.+++.+++.+++.+++++.|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~i~~~~~G~l 84 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDIL--LPQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAGIL 84 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHS------------------CCCSHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334445555667777776665555 55555554 9999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHH
Q 041698 104 TRQFGRKLSMFFGGILFLAGALLN---GFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITV 180 (355)
Q Consensus 104 ~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 180 (355)
+||+|||++++++.++.+++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++...+.++
T Consensus 85 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 164 (438)
T 3o7q_A 85 MKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999 88899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh-cCCCc----------------------cchHHHHhhhHHHHHHHHHHhc--cccCChhHHHhcCCh
Q 041698 181 GILIANVLNYFFN-KIHGG----------------------WGWRLSLGGAMVPALIITVGSM--ILPDTPNSIIERGRH 235 (355)
Q Consensus 181 G~~~~~~i~~~~~-~~~~~----------------------~~w~~~~~~~~~~~~~~~~~~~--~~~e~~~~~~~~~~~ 235 (355)
|..++|.+++.+. +..+. .+||+.|++.+++.++..+..+ ..||+++.. ++.
T Consensus 165 g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~ 241 (438)
T 3o7q_A 165 GAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSD 241 (438)
T ss_dssp HHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CCC
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---ccc
Confidence 9999999999988 43210 0199999877766555444433 346554310 000
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHH-HHh-c
Q 041698 236 EEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL-FNT-I 313 (355)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~ 313 (355)
+ ++++.+.+++++++.+..+. ..+..+...........+.|.+ .++ +
T Consensus 242 ~---------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (438)
T 3o7q_A 242 A---------------------------KQGSFSASLSRLARIRHWRW----AVLAQFCYVGAQTACWSYLIRYAVEEIP 290 (438)
T ss_dssp S---------------------------STTSHHHHHHHHTTCSHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred c---------------------------cccchhhhHHHHHhChHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 0 00111123444554433222 2222222333344555667766 666 4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 314 GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 314 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
|+++.+++.......++.+++.++.++++||++||+.+..
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 330 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAA 330 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 9999999999999999999999999999999999987654
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=236.04 Aligned_cols=290 Identities=17% Similarity=0.112 Sum_probs=214.4
Q ss_pred hHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhh
Q 041698 22 YVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVAS 101 (355)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g 101 (355)
..+.......++.+..+++...+++. +|. +.+++ .+..+.+++.+++.++..++++++|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G 83 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALA--MPY------------------LVEQG-FSRGDLGFALSGISIAYGFSKFIMG 83 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHH--HHH------------------TTSST-TCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHH------------------HHHHh-ccHhHHHHHHHHHHHHHHHHHHhHH
Confidence 34556666667777777766665433 222 25566 7899999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHH
Q 041698 102 RVTRQFGRKLSMFFGGILFLAGALLNGF----AQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLS 177 (355)
Q Consensus 102 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 177 (355)
+++||+|||++++++.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+
T Consensus 84 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 163 (451)
T 1pw4_A 84 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA 163 (451)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCccc-hHHHHhhhHHHHHHHHHH-hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHH
Q 041698 178 ITVGILIANVLNYFFNKIHGGWG-WRLSLGGAMVPALIITVG-SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEF 255 (355)
Q Consensus 178 ~~~G~~~~~~i~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (355)
..+|.+++|.+++.+.+ ..+ ||+.|++.+++.++..+. .+++||+|++...+++.++. ++.+.+.
T Consensus 164 ~~~g~~~g~~~~~~l~~---~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 230 (451)
T 1pw4_A 164 HNVGGGIPPLLFLLGMA---WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------NDYPDDY 230 (451)
T ss_dssp HHHHHTSHHHHHHHHHH---HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC-----
T ss_pred HHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------ccccccc
Confidence 99999999999998776 467 999999988877665444 46678887642211111100 0000000
Q ss_pred HHHHHHHHHhhccccc--hhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh-cCCCCcHHHHHHHHHHHHHH
Q 041698 256 NDLVAASEASRQVEHP--WKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT-IGFGSDASLMSAVITGIVNV 332 (355)
Q Consensus 256 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 332 (355)
.+ +++++....+ .++.+++ +. ++...+..+...........+.|.+.++ +|+++.+++.......++.+
T Consensus 231 ---~~-~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 302 (451)
T 1pw4_A 231 ---NE-KAEQELTAKQIFMQYVLPN---KL-LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 302 (451)
T ss_dssp ------------CCTHHHHHHTSSC---HH-HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHH
T ss_pred ---hh-hhhcccccccchHHHHHcC---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 00 0000111111 1222222 22 3333333344444455667777877776 89999999999999999999
Q ss_pred HHhhhhhheeccc--CCcccccc
Q 041698 333 VATMVSIYGVDKW--GRRFLFLE 353 (355)
Q Consensus 333 ~~~~~~g~l~d~~--g~r~~~~~ 353 (355)
++.++.+++.||+ +||+.+..
T Consensus 303 ~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 303 PGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchhHHH
Confidence 9999999999999 88877643
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-28 Score=216.29 Aligned_cols=236 Identities=14% Similarity=0.191 Sum_probs=189.0
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccc
Q 041698 73 QYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
+++|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++.+++++++.+++.|++.|++.+...+
T Consensus 28 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~ 107 (375)
T 2gfp_A 28 RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGV 107 (375)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhh
Confidence 33499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH-HhccccCChhHHHh
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV-GSMILPDTPNSIIE 231 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~ 231 (355)
...+++.|++|+++|++++++...+..+|..++|.+++.+.+ ..+||+.|++.+++.++..+ ..+++||++++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 182 (375)
T 2gfp_A 108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT---MWNWRACYLFLLVLCAGVTFSMARWMPETRPVD-- 182 (375)
T ss_dssp HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT--
T ss_pred hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC--
Confidence 999999999999999999999999999999999999999987 56899999988887776655 345678876421
Q ss_pred cCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH
Q 041698 232 RGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN 311 (355)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
++ +++.++++++.++++. ++...+..+...........+.|.+.+
T Consensus 183 -~~------------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (375)
T 2gfp_A 183 -AP------------------------------RTRLLTSYKTLFGNSG----FNCYLLMLIGGLAGIAAFEACSGVLMG 227 (375)
T ss_dssp -CC------------------------------CCCTTTCSTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCSCSSH
T ss_pred -cc------------------------------cccHHHHHHHHhcCcc----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0111223344443322 222222222223333444555565554
Q ss_pred h-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCc
Q 041698 312 T-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 312 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 348 (355)
+ .|+++.+.+.......++.+++.++.+++.||.+++
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 228 AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 788888999999999999999999999999998873
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-25 Score=200.55 Aligned_cols=145 Identities=18% Similarity=0.226 Sum_probs=132.8
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQ-FGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
++|+|++..+.+++.+++.++..+++++.|+++|| +|||+++.++.++.+++.++++++++++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45569999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhcCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh
Q 041698 151 NQSVPLYLSEMAPYRF--RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
.+...+++.|++|+++ |+.+.++++.+.++|..++|.+++.+.+ ..+||+.|++.++..++..+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE---AAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 6778888999999999999999999987 5789999998876665554443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-20 Score=171.49 Aligned_cols=141 Identities=14% Similarity=0.233 Sum_probs=129.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhcccccccch
Q 041698 77 YDSETLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGALLNGFAQ-AIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
++..+.+++.+++.++..+++++.|+++||+ |||+++.++.++.+++.++.++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhhhhhcCCCCcccchhhH---HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 155 PLYLSEMAPYRFRGALNIG---FQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
.+++.|++|+++|+++.+. ...+.++|..++|.+++.+.+ ..+||+.|++.+++.++..+..+
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK---NFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH---TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877666 999999999999999999887 56899999988877665554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-21 Score=171.64 Aligned_cols=247 Identities=13% Similarity=0.053 Sum_probs=149.9
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH---HHHHhhHH-HHHHHHHHHhhhccccc
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGAL---LNGFAQAI-WMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~---~~~~~~~~-~~l~~~r~l~G~~~g~~ 150 (355)
+|+|..+.+++.+++.+++.++++++|+++||+|||++++++..+.+++.. ...+++.. ..+...+.+.|++.+..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999998887765322 11233222 12445677777766655
Q ss_pred ccchhhhhhhcCCC--CcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhH
Q 041698 151 NQSVPLYLSEMAPY--RFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNS 228 (355)
Q Consensus 151 ~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~ 228 (355)
.+.......++.++ ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.++..++..+..++.+|++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKTDAPS 193 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 55545555555433 345777777777788899999999998875 479999998777655554444444433311
Q ss_pred HHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHH
Q 041698 229 IIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPV 308 (355)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
+.+.++.. +.+ .++....+++++++++..+. .... .+.....+.....+.|.
T Consensus 194 ---~~~~~~~~-------~~~--------------~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~ 245 (417)
T 2cfq_A 194 ---SATVANAV-------GAN--------------HSAFSLKLALELFRQPKLWF---LSLY-VIGVSCTYDVFDQQFAN 245 (417)
T ss_dssp ---SSCSSSSS-------SSC--------------CCCCCHHHHHHHTTCHHHHH---HHHH-HHHHHHHHHHHHHHHHH
T ss_pred ---cccccccc-------ccc--------------cccccHHHHHHHhcCCchhh---HHHH-HHHHHHHHHHHHHHHHH
Confidence 00000000 000 00000011233333322221 1111 11111112223334555
Q ss_pred HHHh-cC---CCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 309 LFNT-IG---FGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 309 ~~~~-~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
++.+ ++ .+....+.......++.+++.++.++++||++||+.+..
T Consensus 246 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~ 294 (417)
T 2cfq_A 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLL 294 (417)
T ss_dssp HHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 5443 22 224445677777888889999999999999999987653
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-13 Score=121.96 Aligned_cols=145 Identities=11% Similarity=0.065 Sum_probs=125.5
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh--chhHHHHHHHHHHH-HHHHHHHHh--hHHHHHHHHHHHhhhcccc
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQF--GRKLSMFFGGILFL-AGALLNGFA--QAIWMLIVGRLLLGFGIGF 149 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~g~ 149 (355)
+|++..+.+++.+...++..++.++.|+++||+ |||+.+.++..+.. ++.++..+. .+.+.+.+..++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999999 99999888877776 666666555 3778888888999999888
Q ss_pred cccchhhhhhhcCCCCcccchhhHHHHHHHH-HHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc
Q 041698 150 ANQSVPLYLSEMAPYRFRGALNIGFQLSITV-GILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL 222 (355)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (355)
..+....++.|.+|+++|+++.++......+ |..++|.+.+.+.+ ..+|+..|++.++..++..+..+++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD---FFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999 99999999999988 5679999988887776665555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=121.54 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=121.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhh
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLY 157 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 157 (355)
+....++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888889999999999999999999999999988888887777777788888888888888777677777889
Q ss_pred hhhcCCCCcccchhhH-HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChh
Q 041698 158 LSEMAPYRFRGALNIG-FQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPN 227 (355)
Q Consensus 158 ~~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~ 227 (355)
+.|.+|++.|++..+. ++....+|..++|.+++.+.+ ..+++..|.+.+++.++..+.. +..||+++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~---~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE---SIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH---HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999999999888 477888999999999998877 4678888888777766665543 44566543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-12 Score=116.55 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=113.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH-----HHHHHHHHHHHHHHHhh---------HHHHHHHHHH
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMF-----FGGILFLAGALLNGFAQ---------AIWMLIVGRL 141 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~l~~~r~ 141 (355)
+.+..+.++..+...++..++.++.|++.||+|||+... .+.++.+++.++..+.. +.+.+.+.-+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA 394 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence 555567788888889999999999999999999986655 77777777776666643 6777888889
Q ss_pred HhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 142 LLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 142 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
+.|++.+...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+ .++...|.+.+...++..+..+
T Consensus 395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA----KSEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG----SSTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988875 3566677766666655554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.2e-12 Score=112.77 Aligned_cols=140 Identities=9% Similarity=-0.034 Sum_probs=116.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.++..+...++..++.++.|+++||+|||+.+.++.++.+++.++..+.++.+.++.. ++.|++.+...+...
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 369 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIF 369 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999888888887665554 888999999999999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccc-hHHHHhhhHHHHHHHHHHhcc
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWG-WRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~~~~ 221 (355)
.+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+ ..+ ++..|++.++..++..+..+.
T Consensus 370 ~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 370 SLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD---AAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH---HHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999866 788888776 566999999999999987 455 888887765554444333333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=8.1e-11 Score=107.55 Aligned_cols=151 Identities=15% Similarity=0.039 Sum_probs=106.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-----AIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~g~~ 150 (355)
+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +...+...-+..+......
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Confidence 55666777777788889999999999999999999999999888888776655431 2222222222222222233
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCC---CccchHHHHhhhHHHHHHHHHH-hccccCCh
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIH---GGWGWRLSLGGAMVPALIITVG-SMILPDTP 226 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (355)
.+....+.+|.+|.+.|++++++......+|..+++.+...+.+.. ...++.+.|++.++++++..+. ++++||+.
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 4566789999999999999999999999999988887766554310 0134555677777776665554 46789985
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-10 Score=102.41 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=101.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH-HHHHHH--HHHH--hhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGIL-FLAGAL--LNGF--AQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|.+..+.+++.+...++..++.++.+++.||+|++. ..+... ...+.. .... .++.+.+++..++.|++.+..
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 308 (375)
T 2gfp_A 231 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGML 308 (375)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh
Confidence 788899999999999999999999999999999832 233322 222222 2222 247777888889999999999
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhh
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGA 208 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~ 208 (355)
.+....++.|..| ++|+++.++.+....+|..++|.+.+.+.+ ..+|+..+...
T Consensus 309 ~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~~~~~~~~~~ 362 (375)
T 2gfp_A 309 FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ---TGQGSLGLLMT 362 (375)
T ss_dssp SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc---CCcccHHHHHH
Confidence 9999999999998 889999999999999999999999988876 34676666553
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.1e-09 Score=95.95 Aligned_cols=140 Identities=18% Similarity=0.075 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhh----hhhch----hHHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVT----RQFGR----KLSMFFGGILFLAGALLNGFA---------QAIWMLIVGRLLL 143 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~ 143 (355)
..+.+.+...++..++.++.+++. ||.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666677777777777764 55543 356677777777777766664 3677788889999
Q ss_pred hhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccch---------HHHHhhhHHHHHH
Q 041698 144 GFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGW---------RLSLGGAMVPALI 214 (355)
Q Consensus 144 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w---------~~~~~~~~~~~~~ 214 (355)
|++.+...+....++.|..|+++|++++++......+|..++|.+.+.+.+..+ .+| +..|++.+.+.++
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV-TEQIVQTGMSVTAFQMFFFAGFAIL 494 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH-HHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccccccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876211 123 3336655655555
Q ss_pred HHHHhcc
Q 041698 215 ITVGSMI 221 (355)
Q Consensus 215 ~~~~~~~ 221 (355)
..+..++
T Consensus 495 ~~~~~~~ 501 (524)
T 2xut_A 495 AAIVFAL 501 (524)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 5444433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 355 | ||||
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.003 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 0.003 |
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 37.1 bits (84), Expect = 0.003
Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 2/141 (1%)
Query: 99 VASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYL 158
A + + G K ++ G + + + FA + +++ + L F + F Y+
Sbjct: 278 FAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337
Query: 159 SEMAPYRFRG-ALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV 217
+ RF + F + ++ +VL + G+ + G + +
Sbjct: 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-SIGFQGAYLVLGLVALGFTLIS 396
Query: 218 GSMILPDTPNSIIERGRHEEA 238
+ P S++ R +E A
Sbjct: 397 VFTLSGPGPLSLLRRQVNEVA 417
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 37.0 bits (84), Expect = 0.003
Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 9/140 (6%)
Query: 105 RQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPY 164
G F + A + ++ +++GF I + L+ E+AP
Sbjct: 315 GNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK 374
Query: 165 RFRGALNIGFQLSITVGILIANVL-NYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILP 223
+ G + G L +V + +GW + +++ + +++
Sbjct: 375 KAAGT---AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 431
Query: 224 DTPNSIIERGRHEEAREELR 243
I E+ RHE+ +EL
Sbjct: 432 -----IGEKRRHEQLLQELV 446
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 355 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.79 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.43 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.27 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=7.1e-30 Score=229.16 Aligned_cols=292 Identities=17% Similarity=0.112 Sum_probs=205.4
Q ss_pred ChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHh
Q 041698 20 TPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLV 99 (355)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~ 99 (355)
+++.|.+...+.++++..+++...++.+ .| +++ |+|+|.++.|++.+++.+++.+++++
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~--~p-~~~------------------~~g~s~~~~g~~~s~~~~~~~~~~~~ 78 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYLVRKNFALA--MP-YLV------------------EQGFSRGDLGFALSGISIAYGFSKFI 78 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHH--HH-HTT------------------SSTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHH------------------HhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666777777777776665433 23 222 23999999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHH
Q 041698 100 ASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ----AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQ 175 (355)
Q Consensus 100 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 175 (355)
+|+++||+|||+++.++.++.+++.+++++++ +++.+++.|++.|++.+...+....++.|++|+++|++++++..
T Consensus 79 ~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 158 (447)
T d1pw4a_ 79 MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN 158 (447)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999999999999888764 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhcCChHHHHHHHHHHhCCCccHHH
Q 041698 176 LSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIERGRHEEAREELRKVRGVNDVEEE 254 (355)
Q Consensus 176 ~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (355)
.+..+|..+++.+++...... .+||+.|++.+.+.++..+.. ++.+|+|+........++. ++..++
T Consensus 159 ~~~~~g~~i~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 226 (447)
T d1pw4a_ 159 CAHNVGGGIPPLLFLLGMAWF--NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------NDYPDD 226 (447)
T ss_dssp HHHHHHHTSHHHHHHHHHHHT--CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC----
T ss_pred cccchhhhhhhhhhhhHhhhh--hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh----------hhcccc
Confidence 999999999999888776532 379999988887766655544 4566665432111111100 000000
Q ss_pred HHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCCCcHHHHHHHHHHHHHHH
Q 041698 255 FNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFGSDASLMSAVITGIVNVV 333 (355)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~ 333 (355)
. ....+++...++...+..++ .+.++......+...........+.+.++. ..+++..+.+.......+..++
T Consensus 227 ~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (447)
T d1pw4a_ 227 Y--NEKAEQELTAKQIFMQYVLP----NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 300 (447)
T ss_dssp -----------CCTHHHHHHTSS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHH
T ss_pred h--hhccccccchhhHHHHHHHc----CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhh
Confidence 0 00000111111111122222 222333333333333334455556666654 4789999999999999999999
Q ss_pred HhhhhhheecccCCccc
Q 041698 334 ATMVSIYGVDKWGRRFL 350 (355)
Q Consensus 334 ~~~~~g~l~d~~g~r~~ 350 (355)
+.++.+++.||++|++.
T Consensus 301 ~~~~~g~~~~~~~~~~~ 317 (447)
T d1pw4a_ 301 GTLLCGWMSDKVFRGNR 317 (447)
T ss_dssp HHHHHHHHHHHTSTTCH
T ss_pred hhhhhhhhhhhcccccc
Confidence 99999999999988753
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1.2e-20 Score=165.90 Aligned_cols=245 Identities=12% Similarity=0.002 Sum_probs=151.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWML----IVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l----~~~r~l~G~~~g~~~ 151 (355)
|+|..++|++.+++.+++.++++++|+++||+|||++++++.....++..+..+..+.... ++.+.+.+.+.+...
T Consensus 39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (417)
T d1pv7a_ 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccc
Confidence 9999999999999999999999999999999999999999999999998888877655443 455555555555555
Q ss_pred cchhhhhhhcCCC--CcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHH-HHHHhccccCChhH
Q 041698 152 QSVPLYLSEMAPY--RFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALI-ITVGSMILPDTPNS 228 (355)
Q Consensus 152 ~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~e~~~~ 228 (355)
........+..++ +++.+..+........+..+++.+++.+.+ .+|+..+........+ ..+..+..+|+++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T d1pv7a_ 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKTDAPSS 194 (417)
T ss_dssp TTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSS
T ss_pred cchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc----ccccccccchhhHHHHHHHHHHHHhcccccc
Confidence 5444444433332 344667778888889999999999998876 4566666555544444 44445566666531
Q ss_pred HHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHH
Q 041698 229 IIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPV 308 (355)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
. .+.++. +.+.++..+....+..+.+..+.............. ......+.
T Consensus 195 ~---~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 245 (417)
T d1pv7a_ 195 A---TVANAV----------------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYD----VFDQQFAN 245 (417)
T ss_dssp S---CSSHHH----------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred h---hhhhhh----------------------hhhcccccccccccccccccccchhhhhHHHHHHHH----hhhccccc
Confidence 1 110000 000000001111122222222222222222221111 11112222
Q ss_pred HHHh----cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 309 LFNT----IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 309 ~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+... .+.+....+.......++..++..+.+++.||.++|+.+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~ 294 (417)
T d1pv7a_ 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLL 294 (417)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHH
T ss_pred cccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhh
Confidence 2211 22334556677788888999999999999999999987654
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=7e-14 Score=122.03 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=127.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 55677888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccchhhHH-HHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc
Q 041698 156 LYLSEMAPYRFRGALNIGF-QLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (355)
+++.|.+|+++|++..++. .....+|..++|.+.+.+.+ +.||+..|++.+++.++..+...+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~---~~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE---SIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999975 56678999999999999988 678999998888777666555433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=4.4e-11 Score=105.48 Aligned_cols=145 Identities=12% Similarity=0.032 Sum_probs=112.2
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHhhhcc
Q 041698 73 QYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG-----FAQAIWMLIVGRLLLGFGI 147 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~ 147 (355)
++++.+..+.++..+...++..++.++.|+++||++||+..........+..+... ...+.+...++-++.|++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 357 (447)
T d1pw4a_ 278 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLI 357 (447)
T ss_dssp TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 34488999999999999999999999999999999987544333333322222221 1356788888888899988
Q ss_pred cccccchhhhhhhcCCCCcccchhhHHHHHHHH-HHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 148 GFANQSVPLYLSEMAPYRFRGALNIGFQLSITV-GILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
+...+....+..|.+|++.|+++.++.+....+ |.+++|.+.+.+.+ +.||+..|++.+...++..+...
T Consensus 358 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~---~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 358 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD---FFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp THHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999998877766 56778999999888 56899888877666655554443
|