Citrus Sinensis ID: 041701

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MAHQLMTSVPALTRLQEPRSFISSLGSPSISKSNSNGFCASPIQCMSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSNGYV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHcccccccccccccHHccccccccccccccccEEEcEEEEEEEEcccccccEEEEcccccccccccHHHHHHcccccc
Coil and Loop (DISEMBL)
mahqlmtsvpaltrlqeprsfisslgspsisksnsngfcaspiqcmsatKVRDKAIndnrrsanyqpsmwsYDYLQSLSNGYV
Flexible Loop (DISEMBL)
mahqlmtsvpaltrlqeprSFISSLGSPSISKSNSNGFCASPIQCMSATKVRDKAINDnrrsanyqpsmwsydylqslsngyv
Low Complexity Region (SEG)
MAHQLMTSVPALTRLQEPRsfisslgspsisksnsngfCASPIQCMSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSNGYV
Disordered region (IsUnstruct)
********************************************************************MWSYDYL********
Disordered Region (DISOPRED)
*********P*****************************************************NYQPSMWSYDYLQSLS****
Disordered Region (DISEMBL)
MAHQLMTSVPALTRLQEPRSFISSLGSPSISKSNSNGFCASPIQCMSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSNGYV
Disordered Region (DISPRO)
****LMTSVPALTRLQEPRSFISSLGSPSISKSNSNGFCASPIQCMSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSNG**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAHQLMTSVPALTRLQEPRSFISSLGSPSISKSNSNGFCASPIQCMSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSNGYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
Q93X23	597	Myrcene synthase, chlorop	N/A	no	0.963	0.134	0.421	2e-09
Q8L5K3	606	(R)-limonene synthase 1 O	N/A	no	0.469	0.064	0.487	3e-06
Q672F7	595	Tricyclene synthase EBOS,	N/A	no	0.469	0.065	0.523	8e-06
Q8L5K4	600	Gamma-terpinene synthase,	N/A	no	0.843	0.116	0.366	2e-05
Q2XSC6	602	(R)-limonene synthase OS=	N/A	no	0.578	0.079	0.375	3e-05
Q94G53	582	(-)-beta-pinene synthase,	N/A	no	0.674	0.096	0.45	5e-05
Q6EJ97	608	Isoprene synthase, chloro	N/A	no	0.843	0.115	0.321	0.0001
A7IZZ2	615	(+)-alpha-pinene synthase	N/A	no	0.734	0.099	0.387	0.0001
Q5SBP1	599	Beta-myrcene synthase, ch	N/A	no	0.578	0.080	0.415	0.0002
Q5SBP2	598	(-)-endo-fenchol synthase	N/A	no	0.578	0.080	0.415	0.0002

>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 1  MAHQLMTSVPALTRLQEPRSFISSLGSPSISKSNSNGFCASPIQCMSATKVRDKAINDNR 60
          MA +L+TS+P     + P S  S      ++    NG+ A P+QCM A KV   + +  R
Sbjct: 1  MALKLLTSLPMYNFSRVPVS--SKDPILLVTSRTRNGYLARPVQCMVANKV-STSPDILR 57

Query: 61 RSANYQPSMWSYDYLQSLSNGYV 83
          RSANYQPS+W++DY++SL   YV
Sbjct: 58 RSANYQPSIWNHDYIESLRIEYV 80

Involved in monoterpene (C10) biosynthesis. The major product is myrcene followed by minor amounts (1.2%) of the cyclic monoterpene limonene.
Quercus ilex (taxid: 58334)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 1EC: 5

>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 31/41 (75%), Gaps = 2/41 (4%)

Query: 42 PIQCMSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSNGY 82
          P+QC+ + K  +  ++  RRSANYQPS+W +D+LQSL++ Y
Sbjct: 37 PVQCLISAKYDNLTVD--RRSANYQPSIWDHDFLQSLNSNY 75

Citrus limon (taxid: 2708)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: 0

>sp|Q672F7|TPS2_LOTJA Tricyclene synthase EBOS, chloroplastic OS=Lotus japonicus GN=EBOS PE=1 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 3/42 (7%)

Query: 41 SPIQCMSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSNGY 82
          SPI C ++T     +    R+SANYQP++W+YDYLQSL  GY
Sbjct: 40 SPIPCYASTSSTSVS---QRKSANYQPNIWNYDYLQSLKLGY 78

Promotes the emission of terpenes volatile organic compounds (VOC) in response to damage mediated by arthropod herbivores (e.g. Tetranychus urticae), probably to attract natural enemies of the herbivores.

Lotus japonicus (taxid: 34305)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 0

EC: 6

>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 20/90 (22%)

Query: 1  MAHQLMTSVPA---LTRLQEPRSFISSLGSPSISKSNSNGFCASPIQC---MSATKVRDK 54
          MA  L++S+PA    TRL  P S            S  NGF     Q    M+A+    K
Sbjct: 1  MALNLLSSLPAACNFTRLSLPLS------------SKVNGFVPPITQVQYPMAASTSSIK 48

Query: 55 AINDN--RRSANYQPSMWSYDYLQSLSNGY 82
           ++    RRSA+Y P++WS+DY+QSL + Y
Sbjct: 49 PVDQTIIRRSADYGPTIWSFDYIQSLDSKY 78

Monoterpene synthase which catalyzes the conversion of geranyl diphosphate to gamma-terpinene and the minor products limonene, alpha-pinene, beta-pinene, alpha-terpinolene, alpha-thujene, alpha-terpinene, myrcene and sabinene.

Citrus limon (taxid: 2708)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 1

EC: 4

>sp|Q2XSC6|LALIM_LAVAN (R)-limonene synthase OS=Lavandula angustifolia PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 32/48 (66%)

Query: 35 SNGFCASPIQCMSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSNGY 82
          S+   A+ ++   AT++  K++++ RRS NY P+ W ++Y+QSL N Y
Sbjct: 34 SSTAAATRLRVSCATQLEIKSVDETRRSGNYNPTAWDFNYIQSLDNQY 81

Catalyzes the formation of (R)-(+)-limonene, terpinolene, (1R,5S)-(+)-camphene, (1R,5R)-(+)-alpha-pinene, beta-myrcene and traces of alpha-phellandrene.

Lavandula angustifolia (taxid: 39329)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: 0

>sp|Q94G53|QH6_ARTAN (-)-beta-pinene synthase,chloroplastic OS=Artemisia annua GN=QH6 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 25 LGSPSISKSNSNGFCASPIQCMSATKVRDKAI--NDNRRSANYQPSMWSYDYLQSLSNGY 82
          L + SIS++N    C      + A +V++ A     NRRSANY PS+WSYD++QSLS+ Y
Sbjct: 13 LCNSSISRTNIVA-CNKQTSTLQA-QVKNVATIETTNRRSANYAPSLWSYDFVQSLSSKY 70

Monoterpene synthase converting geranyl diphosphate to (-)-beta-pinene and (-)-alpha-pinene in a 94:6 ratio.

Artemisia annua (taxid: 35608)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 2

EC: 0

>sp|Q6EJ97|ISPS_PUEML Isoprene synthase, chloroplastic OS=Pueraria montana var. lobata GN=ISPS PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 14/84 (16%)

Query: 1  MAHQLMTSVPA-LTRLQEPRSFIS---SLGSPSISKSNSNGFCASPIQCMSATKVRDKAI 56
          ++++L +  P   TR  + ++FI+   SL +P   +      CA+  Q    T+      
Sbjct: 8  LSNKLSSPTPTPSTRFPQSKNFITQKTSLANPKPWRV----ICATSSQFTQITE------ 57

Query: 57 NDNRRSANYQPSMWSYDYLQSLSN 80
          +++RRSANYQP++W++++LQSL N
Sbjct: 58 HNSRRSANYQPNLWNFEFLQSLEN 81

Lyase that catalyzes the formation of isoprene from dimethylallyl diphosphate.

Pueraria montana var. lobata (taxid: 3893)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|A7IZZ2|TPS2_CANSA (+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 21 FISSLGSPSISKSNSNGFCASPIQCMSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSN 80
          F     + +  KS S   C +PIQC  A           RRSANY P +WS+D++QSL  
Sbjct: 33 FTPKTSNITTKKSRSRPNC-NPIQCSLAKSPSSDTSTIVRRSANYDPPIWSFDFIQSLPC 91

Query: 81 GY 82
           Y
Sbjct: 92 KY 93

Involved in monoterpene (C10) olefins biosynthesis. The major product is (+)-alpha-pinene.

Cannabis sativa (taxid: 3483)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|Q5SBP1|MYRS_OCIBA Beta-myrcene synthase, chloroplastic OS=Ocimum basilicum GN=MYS PE=1 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 5/53 (9%)

Query: 34 NSNGFCASPIQCMSATKVRD----KAINDNRRSANYQPSMWSYDYLQSLSNGY 82
          NSN   ++P +C+S+T+ R     +   + RRS NYQPS W ++Y+QSL+N +
Sbjct: 23 NSNNKASNP-RCVSSTRRRPSCPLQLDVEPRRSGNYQPSAWDFNYIQSLNNNH 74

Monoterpene synthase that catalyzes the formation of beta-myrcene from geranyl diphosphate.

Ocimum basilicum (taxid: 39350)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q5SBP2|FES_OCIBA (-)-endo-fenchol synthase, chloroplastic OS=Ocimum basilicum GN=FES PE=1 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 5/53 (9%)

Query: 34 NSNGFCASPIQCMSATKVRD----KAINDNRRSANYQPSMWSYDYLQSLSNGY 82
          NSN   ++P +C+S+T+ R     +   + RRS NYQPS W ++Y+QSL+N +
Sbjct: 23 NSNNKASNP-RCVSSTRRRPSCPLQLDVEPRRSGNYQPSAWDFNYIQSLNNNH 74

Monoterpene synthase that catalyzes the formation of fenchol from geranyl diphosphate.

Ocimum basilicum (taxid: 39350)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
61161985	617	(E)-beta-ocimene synthase [Citrus unshiu	1.0	0.134	1.0	5e-42
359495018	600	PREDICTED: LOW QUALITY PROTEIN: myrcene	0.915	0.126	0.435	3e-08
75249335	597	RecName: Full=Myrcene synthase, chloropl	0.963	0.134	0.421	8e-08
121490210	597	pinene synthase [Quercus ilex]	0.963	0.134	0.409	3e-07
225465911	593	PREDICTED: myrcene synthase, chloroplast	0.891	0.124	0.372	2e-06
147843306	604	hypothetical protein VITISV_017009 [Viti	0.891	0.122	0.372	3e-06
225465915	594	PREDICTED: myrcene synthase, chloroplast	0.891	0.124	0.372	4e-06
147773919	605	hypothetical protein VITISV_016813 [Viti	0.891	0.122	0.372	4e-06
313755420	593	(+)-alpha-phellandrene synthase [Vitis v	0.891	0.124	0.360	9e-06
313755422	593	terpene synthase [Vitis vinifera]	0.891	0.124	0.360	1e-05

>gi|61161985|dbj|BAD91046.1| (E)-beta-ocimene synthase [Citrus unshiu]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MAHQLMTSVPALTRLQEPRSFISSLGSPSISKSNSNGFCASPIQCMSATKVRDKAINDNR 60
          MAHQLMTSVPALTRLQEPRSFISSLGSPSISKSNSNGFCASPIQCMSATKVRDKAINDNR
Sbjct: 1  MAHQLMTSVPALTRLQEPRSFISSLGSPSISKSNSNGFCASPIQCMSATKVRDKAINDNR 60

Query: 61 RSANYQPSMWSYDYLQSLSNGYV 83
          RSANYQPSMWSYDYLQSLSNGYV
Sbjct: 61 RSANYQPSMWSYDYLQSLSNGYV 83

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495018|ref|XP_003634898.1| PREDICTED: LOW QUALITY PROTEIN: myrcene synthase, chloroplastic-like [Vitis vinifera]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 9/85 (10%)

Query: 1  MAHQLMTSVP--ALTRLQEPRSFISSLGSPSISKSNSNGFCASPIQCMSATKVRDKAIND 58
          MA  ++   P  A  RLQ P    S  G     KS S+      +QC+ A+KV+D+    
Sbjct: 1  MALSMLAPNPILAFPRLQPPTRHCSRQG-----KSFSDSTSGLVVQCLFASKVQDQTAV- 54

Query: 59 NRRSANYQPSMWSYDYLQSLSNGYV 83
           RRSANYQPS+W YDY+QSL + YV
Sbjct: 55 -RRSANYQPSIWDYDYIQSLRSNYV 78

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75249335|sp|Q93X23.1|MYRS_QUEIL RecName: Full=Myrcene synthase, chloroplastic; Flags: Precursor gi|14331015|emb|CAC41012.1| putative chloroplast terpene synthase [Quercus ilex]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 1  MAHQLMTSVPALTRLQEPRSFISSLGSPSISKSNSNGFCASPIQCMSATKVRDKAINDNR 60
          MA +L+TS+P     + P S  S      ++    NG+ A P+QCM A KV   + +  R
Sbjct: 1  MALKLLTSLPMYNFSRVPVS--SKDPILLVTSRTRNGYLARPVQCMVANKV-STSPDILR 57

Query: 61 RSANYQPSMWSYDYLQSLSNGYV 83
          RSANYQPS+W++DY++SL   YV
Sbjct: 58 RSANYQPSIWNHDYIESLRIEYV 80

Source: Quercus ilex

Species: Quercus ilex

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|121490210|emb|CAK55186.1| pinene synthase [Quercus ilex]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 1  MAHQLMTSVPALTRLQEPRSFISSLGSPSISKSNSNGFCASPIQCMSATKVRDKAINDNR 60
          MA +L+TS+P     + P S  S      ++    NG+ A P+QCM A KV   + +  R
Sbjct: 1  MALKLLTSLPMYNFSRVPVS--SKDPILLVTSRTRNGYLARPVQCMVANKV-STSPDILR 57

Query: 61 RSANYQPSMWSYDYLQSLSNGYV 83
          RSANYQPS+W++DY++SL   +V
Sbjct: 58 RSANYQPSIWNHDYIESLRIEFV 80

Source: Quercus ilex

Species: Quercus ilex

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465911|ref|XP_002267159.1| PREDICTED: myrcene synthase, chloroplastic [Vitis vinifera]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 12/86 (13%)

Query: 1  MAHQLMTSVP--ALTRLQEPRSFISSLGSPSISKSNSNGFCAS-PIQCMSATKVRDKAIN 57
          MA   ++S P    TRLQ    F          +  S G C S P+QC    K   +   
Sbjct: 1  MALLTLSSNPFFTFTRLQPASRF---------CRGKSQGVCISGPVQCTGGAKTSSQTAV 51

Query: 58 DNRRSANYQPSMWSYDYLQSLSNGYV 83
            RR+A+YQPS+W +DY+QSL++ YV
Sbjct: 52 IVRRTASYQPSIWDHDYIQSLTSDYV 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843306|emb|CAN82665.1| hypothetical protein VITISV_017009 [Vitis vinifera]

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 12/86 (13%)

Query: 1  MAHQLMTSVP--ALTRLQEPRSFISSLGSPSISKSNSNGFCAS-PIQCMSATKVRDKAIN 57
          MA   ++S P    TRLQ    F          +  S G C S P+QC    K   +   
Sbjct: 1  MALLTLSSNPFFTFTRLQPASRF---------CRGKSQGVCISGPVQCTGGAKTSSQTAV 51

Query: 58 DNRRSANYQPSMWSYDYLQSLSNGYV 83
            RR+A+YQPS+W +DY+QSL++ YV
Sbjct: 52 IVRRTASYQPSIWDHDYIQSLTSDYV 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465915|ref|XP_002267453.1| PREDICTED: myrcene synthase, chloroplastic [Vitis vinifera]

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 12/86 (13%)

Query: 1  MAHQLMTSVP--ALTRLQEPRSFISSLGSPSISKSNSNGFCAS-PIQCMSATKVRDKAIN 57
          MA   ++S P    TRLQ    F          +  S G C S P+QC    K   +   
Sbjct: 1  MALLTLSSNPFFTFTRLQPSSRF---------CRGKSQGVCISGPVQCTGGAKTSSQPAV 51

Query: 58 DNRRSANYQPSMWSYDYLQSLSNGYV 83
            RR+A+YQPS+W +DY+QSL++ YV
Sbjct: 52 IVRRTASYQPSIWDHDYIQSLTSDYV 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773919|emb|CAN60797.1| hypothetical protein VITISV_016813 [Vitis vinifera]

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 12/86 (13%)

Query: 1  MAHQLMTSVP--ALTRLQEPRSFISSLGSPSISKSNSNGFCAS-PIQCMSATKVRDKAIN 57
          MA   ++S P    TRLQ    F          +  S G C S P+QC    K   +   
Sbjct: 1  MALLTLSSNPFFTFTRLQPSSRF---------CRGKSQGVCISGPVQCTGGAKTSSQPAV 51

Query: 58 DNRRSANYQPSMWSYDYLQSLSNGYV 83
            RR+A+YQPS+W +DY+QSL++ YV
Sbjct: 52 IVRRTASYQPSIWDHDYIQSLTSDYV 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313755420|gb|ADR74201.1| (+)-alpha-phellandrene synthase [Vitis vinifera]

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 12/86 (13%)

Query: 1  MAHQLMTSVP--ALTRLQEPRSFISSLGSPSISKSNSNGFCAS-PIQCMSATKVRDKAIN 57
          MA   ++S P    TRLQ    F          +  S G C S P+QC    K   +   
Sbjct: 1  MALLTLSSNPFFTFTRLQPASRF---------CRGKSQGVCISGPVQCTGGAKTSSQTAV 51

Query: 58 DNRRSANYQPSMWSYDYLQSLSNGYV 83
            RR+A+YQPS+W +DY++SL++ YV
Sbjct: 52 IVRRTASYQPSIWDHDYIRSLTSDYV 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313755422|gb|ADR74202.1| terpene synthase [Vitis vinifera]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 12/86 (13%)

Query: 1  MAHQLMTSVP--ALTRLQEPRSFISSLGSPSISKSNSNGFCAS-PIQCMSATKVRDKAIN 57
          MA   ++S P    TRLQ    F          +  S G C S P+QC    K   +   
Sbjct: 1  MALLTLSSNPFFTFTRLQPASRF---------CRGKSQGVCISGPVQCTGGAKTSSQTAV 51

Query: 58 DNRRSANYQPSMWSYDYLQSLSNGYV 83
            RR+A+YQPS+W +DY++SL++ YV
Sbjct: 52 IVRRTASYQPSIWDHDYIRSLTSDYV 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
UNIPROTKB|Q672F7	595	EBOS "Tricyclene synthase EBOS	0.469	0.065	0.523	8.1e-06
UNIPROTKB|Q8GUE4	603	GerS "Geraniol synthase, chlor	0.506	0.069	0.444	0.00016
TAIR|locus:2129101	565	TPS03 "terpene synthase 03" [A	0.301	0.044	0.68	0.0005
UNIPROTKB|Q9SPN1	583	QH5 "R-linalool synthase QH5,	0.361	0.051	0.6	0.00067

UNIPROTKB|Q672F7 EBOS "Tricyclene synthase EBOS, chloroplastic" [Lotus japonicus (taxid:34305)]

 Score = 114 (45.2 bits), Expect = 8.1e-06, P = 8.1e-06
 Identities = 22/42 (52%), Positives = 31/42 (73%)

Query:    41 SPIQCMSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSNGY 82
             SPI C ++T     +++  R+SANYQP++W+YDYLQSL  GY
Sbjct:    40 SPIPCYASTS--STSVSQ-RKSANYQPNIWNYDYLQSLKLGY 78

GO:0008152 "metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0010333 "terpene synthase activity" evidence=IDA

GO:0080027 "response to herbivore" evidence=IEP

UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)]

 Score = 102 (41.0 bits), Expect = 0.00016, P = 0.00016
 Identities = 20/45 (44%), Positives = 27/45 (60%)

Query:    39 CASP-IQCMSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSNGY 82
             C S  I C + T      +   RRS NY+PS+W YD++QSL +GY
Sbjct:    31 CVSKHISCSTTTPTYSTTVP--RRSGNYKPSIWDYDFVQSLGSGY 73

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISS

TAIR|locus:2129101 TPS03 "terpene synthase 03" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00050, P = 0.00050
 Identities = 17/25 (68%), Positives = 21/25 (84%)

Query:    59 NRRSANYQPSMWSYDYLQSLSNGYV 83
             +RRSANYQPS+W ++YL SL N YV
Sbjct:    25 SRRSANYQPSLWQHEYLLSLGNTYV 49

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0080027 "response to herbivore" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0034768 "(E)-beta-ocimene synthase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009625 "response to insect" evidence=IEP

GO:0016106 "sesquiterpenoid biosynthetic process" evidence=IMP

GO:0050551 "myrcene synthase activity" evidence=IDA

GO:0052578 "alpha-farnesene synthase activity" evidence=IMP

GO:0006863 "purine nucleobase transport" evidence=RCA

UNIPROTKB|Q9SPN1 QH5 "R-linalool synthase QH5, chloroplastic" [Artemisia annua (taxid:35608)]

 Score = 96 (38.9 bits), Expect = 0.00067, P = 0.00067
 Identities = 18/30 (60%), Positives = 24/30 (80%)

Query:    53 DKAINDNRRSANYQPSMWSYDYLQSLSNGY 82
             D A +  RRSANY+PS WS+D++QSLS+ Y
Sbjct:    38 DVAESHVRRSANYEPSSWSFDHIQSLSSKY 67


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.125   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       83        64   0.00091  102 3  11 22  0.39    28
                                                     29  0.44    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  100 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.05u 0.27s 6.32t   Elapsed:  00:00:01
  Total cpu time:  6.05u 0.27s 6.32t   Elapsed:  00:00:01
  Start:  Sat May 11 01:20:51 2013   End:  Sat May 11 01:20:52 2013

GO:0009611 "response to wounding" evidence=IEP

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

GO:0034008 "R-linalool synthase activity" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	83
cd00684	542	cd00684, Terpene_cyclase_plant_C1, Plant Terpene C	6e-05

>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1

 Score = 39.1 bits (92), Expect = 6e-05
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 60 RRSANYQPSMWSYDYLQSLSNGY 82
          R SAN+ PS+W  D+  SLS+ Y
Sbjct: 1  RPSANFPPSLWGDDHFLSLSSDY 23

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	83
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	7e-12
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	3e-10
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	2e-09
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	4e-08
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	7e-08
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	8e-08
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	1e-07

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569

 Score = 58.3 bits (140), Expect = 7e-12
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 32 KSNSNGFC-ASPIQCMSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSNGY 82
            + +G    +  Q M      D   +   R+  YQP++W +  +QS  + Y
Sbjct: 6  HHHHHGMASMTGGQQMGRDLYDDDDKDRWIRTGGYQPTLWDFSTIQSFDSEY 57

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554

 Score = 53.6 bits (128), Expect = 3e-10
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 40 ASPIQCMSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSNGY 82
          AS +  M ++       ++ R  A++QPS+W   +L       
Sbjct: 2  ASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCPDKNI 44

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555

 Score = 51.3 bits (122), Expect = 2e-09
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 46 MSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSNGYV 83
          M  +       ++ RRSA+Y+P+ W YD+L S      
Sbjct: 1  MRGSHHHHHHGSEARRSADYEPNSWDYDFLLSSDTDES 38

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550

 Score = 47.5 bits (112), Expect = 4e-08
 Identities = 8/37 (21%), Positives = 15/37 (40%)

Query: 46 MSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSNGY 82
          M++  V +      R  A++ PS+W   +L       
Sbjct: 3  MASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIKNQ 39

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817

 Score = 46.9 bits (110), Expect = 7e-08
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 15/57 (26%)

Query: 27 SPSISKSNSNGFCASPIQCMSATKVRDKAINDNRRSANYQPSMWSYDYLQSLSNGYV 83
             +S    +    S +                RR+AN  P++W YD + SL + Y+
Sbjct: 7  VSKVSSLVCDLSSTSGLI---------------RRTANPHPNVWGYDLVHSLKSPYI 48

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549

 Score = 46.7 bits (110), Expect = 8e-08
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 57 NDNRRSANYQPSMWSYDYLQSLSNGYV 83
          +  RRS NYQP++W  +Y+QSL+  Y 
Sbjct: 3  HQIRRSGNYQPALWDSNYIQSLNTPYT 29

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543

 Score = 46.3 bits (109), Expect = 1e-07
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 60 RRSANYQPSMWSYDYLQSLSNGYV 83
          RRS NY PS W  +++QSL + Y 
Sbjct: 2  RRSGNYNPSRWDVNFIQSLLSDYK 25

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	83
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	97.61
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	97.59
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	97.59
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	97.54
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	97.51
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	97.33

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}

Probab=97.61  E-value=8.1e-06  Score=66.26  Aligned_cols=26  Identities=31%  Similarity=0.793  Sum_probs=0.0

Q ss_pred             cccccCCCCCCCCCchhhhhcccCCC
Q 041701           57 NDNRRSANYQPSMWSYDYLQSLSNGY   82 (83)
Q Consensus        57 ~v~RRSaNY~PSiWd~dfIqSL~s~y   82 (83)
                      +..||++||+|++||++||+|+.+.|
T Consensus        32 ~~~r~~~~~~ps~W~~~fl~~~~~~~   57 (569)
T 2j5c_A           32 DRWIRTGGYQPTLWDFSTIQSFDSEY   57 (569)
T ss_dssp             --------------------------
T ss_pred             cccCCCCCCCCCcCCcccccCCCchh
Confidence            45699999999999999999986654

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*

Probab=97.59  E-value=1.2e-05  Score=65.36  Aligned_cols=25  Identities=24%  Similarity=0.490  Sum_probs=21.0

Q ss_pred             cccccCCCCCCCCCchhhhhcccCC
Q 041701           57 NDNRRSANYQPSMWSYDYLQSLSNG   81 (83)
Q Consensus        57 ~v~RRSaNY~PSiWd~dfIqSL~s~   81 (83)
                      .+.||+|||||++|+|+|||++.++
T Consensus        14 ~~~R~~~~~~ps~W~d~fl~~~~~~   38 (550)
T 3m00_A           14 EIVRPVADFSPSLWGDQFLSFSIKN   38 (550)
T ss_dssp             --CCCCCCCCCCTTTTTTSCCCCCH
T ss_pred             ccCCCCCCCCcccccccccccCCcc
Confidence            3569999999999999999998654

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=97.59  E-value=1.1e-05  Score=68.26  Aligned_cols=26  Identities=42%  Similarity=0.800  Sum_probs=12.1

Q ss_pred             cccccCCCCCCCCCchhhhhcccCCC
Q 041701           57 NDNRRSANYQPSMWSYDYLQSLSNGY   82 (83)
Q Consensus        57 ~v~RRSaNY~PSiWd~dfIqSL~s~y   82 (83)
                      .+.||+|||+|++|+|+||||+.++|
T Consensus        22 ~~~Rrsany~Ps~W~~~~i~sl~~~~   47 (817)
T 3sdr_A           22 GLIRRTANPHPNVWGYDLVHSLKSPY   47 (817)
T ss_dssp             -------------CHHHHHHTCCCGG
T ss_pred             CccCCCCCCCCCCCCCCeeeccCCcc
Confidence            35799999999999999999999876

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*

Probab=97.54  E-value=1.9e-05  Score=63.81  Aligned_cols=26  Identities=50%  Similarity=1.016  Sum_probs=12.2

Q ss_pred             cccccCCCCCCCCCchhhhhcccCCC
Q 041701           57 NDNRRSANYQPSMWSYDYLQSLSNGY   82 (83)
Q Consensus        57 ~v~RRSaNY~PSiWd~dfIqSL~s~y   82 (83)
                      .+.||++||+||+||++||+|+.+.|
T Consensus         3 ~~~r~~~~~~ps~W~~~fl~s~~~~~   28 (549)
T 1n1b_A            3 HQIRRSGNYQPALWDSNYIQSLNTPY   28 (549)
T ss_dssp             ------------CCCHHHHHHCCCST
T ss_pred             CcCCCCCCCCCCCCCCCcccCCCcch
Confidence            35699999999999999999987654

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*

Probab=97.51  E-value=2.3e-05  Score=63.81  Aligned_cols=25  Identities=28%  Similarity=0.655  Sum_probs=16.0

Q ss_pred             cccccCCCCCCCCCchhhhhcccCCC
Q 041701           57 NDNRRSANYQPSMWSYDYLQSLSNGY   82 (83)
Q Consensus        57 ~v~RRSaNY~PSiWd~dfIqSL~s~y   82 (83)
                      .+.||+||||||+|+|+|||+ .++|
T Consensus        19 ~~~R~~~~~~ps~W~~~fl~~-~~~~   43 (554)
T 3g4d_A           19 DEMRPKADFQPSIWGDLFLNC-PDKN   43 (554)
T ss_dssp             ------CCCCCCTTTTTTTSC-CC--
T ss_pred             CCCCCCCCCCccccccccccC-CCch
Confidence            356999999999999999999 5554

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*

Probab=97.33  E-value=5.8e-05  Score=61.44  Aligned_cols=25  Identities=44%  Similarity=0.911  Sum_probs=16.8

Q ss_pred             ccccCCCCCCCCCchhhhhcccCCC
Q 041701           58 DNRRSANYQPSMWSYDYLQSLSNGY   82 (83)
Q Consensus        58 v~RRSaNY~PSiWd~dfIqSL~s~y   82 (83)
                      ..|++|||+||+|+|+|||++.++|
T Consensus        13 ~~~~~~~~~ps~W~~~fl~~~~~~~   37 (555)
T 3n0f_A           13 EARRSADYEPNSWDYDFLLSSDTDE   37 (555)
T ss_dssp             ----CCCCCCCTTCHHHHTCC----
T ss_pred             ccCCCCCCCcccccccccccCCcch
Confidence            3599999999999999999987654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00