Citrus Sinensis ID: 041758

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
MDISDASRTTTQTVTDYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNSQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRARNVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEVCRYII
ccccccccccccccccccHHHHHHHHccccccHHHHHHcccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccEEEEcccccccccccccEEEEEcEEEcccccccccccccccccc
ccccccccccccccccccHHHHHHHccccccccHHHHHccccccccHEEcccHHccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEccccccccccccccHHHEEEEccccccccHHHccHHHHHHc
mdisdasrtttqtvtdydrakevqafddtkagVKGLVDagivniprifirppeELVEELTshqtnsqvpvidldgvrgnkLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEfytrdrarnvrfnsnfdlhysrtanwrdTLTISALastdldpneypevcryii
mdisdasrtttqtvtdydrakevqafddtkagvkglvdagivnipRIFIRPPEELVEELtshqtnsqvpvidldgvrGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKkefytrdrarnvrfnsnfdlhysrtanwrdtLTISAlastdldpneypevcrYII
MDISDASRTTTQTVTDYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNSQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRARNVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEVCRYII
**********************VQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELT***TNSQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRARNVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEVCRYI*
************************AFDDTKAGVKGLVDAGIVNIPRIFIRPP************NSQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKE********NVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEVCRYII
*************VTDYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVE********SQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRARNVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEVCRYII
*****************DRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNSQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRARNVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEVCRYII
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDISDASRTTTQTVTDYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNSQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRARNVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEVCRYII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query183 2.2.26 [Sep-21-2011]
P10967 363 1-aminocyclopropane-1-car N/A no 0.868 0.438 0.497 1e-40
Q84MB3 365 1-aminocyclopropane-1-car yes no 0.928 0.465 0.462 6e-40
O04847 401 Deacetoxyvindoline 4-hydr N/A no 0.928 0.423 0.434 5e-38
Q8H1S4 369 1-aminocyclopropane-1-car no no 0.868 0.430 0.455 9e-38
Q9SKK4 359 Probable 2-oxoacid depend no no 0.907 0.462 0.452 1e-37
P93824 360 1-aminocyclopropane-1-car no no 0.890 0.452 0.443 2e-36
Q9LSW7 365 1-aminocyclopropane-1-car no no 0.945 0.473 0.418 1e-35
Q9C5K7 369 1-aminocyclopropane-1-car no no 0.928 0.460 0.415 2e-35
Q9M2C4 370 1-aminocyclopropane-1-car no no 0.918 0.454 0.437 3e-35
Q9LTH7 366 1-aminocyclopropane-1-car no no 0.918 0.459 0.465 4e-35
>sp|P10967|ACCH3_SOLLC 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1 Back     alignment and function desciption
 Score =  166 bits (419), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/167 (49%), Positives = 115/167 (68%), Gaps = 8/167 (4%)

Query: 17  YDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNSQVPVIDLDGV 76
           YD+  E++AFDDTKAGVKGLVD+GI  +P+IF+ PP++  ++  +H      PVIDL G+
Sbjct: 10  YDKMSELKAFDDTKAGVKGLVDSGITKVPQIFVLPPKDRAKKCETHFV---FPVIDLQGI 66

Query: 77  RGN--KLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTR 134
             +  K +EIVD+VR A+E WGFFQVVNHGIP +VL+  ++G R+F EQD E+KK++YTR
Sbjct: 67  DEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTR 126

Query: 135 DRARNVRFNSNFDLHYSR--TANWRDTLTISALASTDLDPNEYPEVC 179
           D A+ V + SN DL+ S    A+WRDT+    +A       E+P  C
Sbjct: 127 DTAKKVVYTSNLDLYKSSVPAASWRDTI-FCYMAPNPPSLQEFPTPC 172

Solanum lycopersicum (taxid: 4081)
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function description
>sp|O04847|DV4H_CATRO Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2 Back     alignment and function description
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKK4|GSL_ARATH Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1 Back     alignment and function description
>sp|P93824|ACCH6_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 6 OS=Arabidopsis thaliana GN=At1g04350 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSW7|ACCH9_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 9 OS=Arabidopsis thaliana GN=At5g43440 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5K7|ACCH2_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1 Back     alignment and function description
>sp|Q9M2C4|ACCH8_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 8 OS=Arabidopsis thaliana GN=At3g61400 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query183
225433023 363 PREDICTED: 1-aminocyclopropane-1-carboxy 0.918 0.462 0.530 1e-46
225433013 319 PREDICTED: 1-aminocyclopropane-1-carboxy 0.923 0.529 0.536 5e-46
225433009 364 PREDICTED: 1-aminocyclopropane-1-carboxy 0.934 0.469 0.508 9e-46
302143399 678 unnamed protein product [Vitis vinifera] 0.950 0.256 0.514 2e-45
225446563 353 PREDICTED: 1-aminocyclopropane-1-carboxy 0.950 0.492 0.514 2e-45
449432576 393 PREDICTED: 1-aminocyclopropane-1-carboxy 0.939 0.437 0.491 3e-45
296083607 359 unnamed protein product [Vitis vinifera] 0.918 0.467 0.520 3e-45
359497517 368 PREDICTED: 1-aminocyclopropane-1-carboxy 0.918 0.456 0.526 5e-45
359477716 673 PREDICTED: 1-aminocyclopropane-1-carboxy 0.890 0.242 0.526 5e-45
356559859 374 PREDICTED: LOW QUALITY PROTEIN: 1-aminoc 0.967 0.473 0.475 1e-44
>gi|225433023|ref|XP_002284638.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/179 (53%), Positives = 127/179 (70%), Gaps = 11/179 (6%)

Query: 9   TTTQTVTDYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNSQV 68
           +TT+   DYDRA E++AFD++K GVKGLVDAG+  +PR+FIRPP+       S   N+Q 
Sbjct: 5   STTKFSEDYDRASELKAFDESKEGVKGLVDAGVSKVPRMFIRPPD------NSRDCNTQF 58

Query: 69  --PVIDLDGVRGNKL--EEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQD 124
             PVIDL G+  + +  ++IV+ VR A+ETWG F VVNHGIP++VLEE+++G+ +F EQD
Sbjct: 59  KFPVIDLHGMDSDPIRRKKIVEMVREASETWGLFTVVNHGIPVSVLEEMMDGVHRFYEQD 118

Query: 125 VELKKEFYTRDRARNVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEVCRYII 183
            E+KKEFYTRD  R V +NSNFDL+ S+ ANWRDT     +A   L+P E P  CR I+
Sbjct: 119 NEVKKEFYTRDLTRKVIYNSNFDLYVSKAANWRDTF-YCLMAPHPLNPQELPATCRDIL 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225433013|ref|XP_002280862.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433009|ref|XP_002284582.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143399|emb|CBI21960.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225446563|ref|XP_002276308.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432576|ref|XP_004134075.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 3-like [Cucumis sativus] gi|449521172|ref|XP_004167604.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296083607|emb|CBI23596.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359497517|ref|XP_003635549.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477716|ref|XP_003632012.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356559859|ref|XP_003548214.1| PREDICTED: LOW QUALITY PROTEIN: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query183
TAIR|locus:2009130 365 AT1G06620 [Arabidopsis thalian 0.901 0.452 0.476 1e-36
TAIR|locus:2052781 358 AT2G30830 [Arabidopsis thalian 0.901 0.460 0.479 1.3e-36
TAIR|locus:2040045 359 AT2G25450 [Arabidopsis thalian 0.901 0.459 0.456 3.5e-36
TAIR|locus:2052796 362 AT2G30840 [Arabidopsis thalian 0.901 0.455 0.468 7.2e-36
TAIR|locus:2018349 360 AT1G04350 [Arabidopsis thalian 0.890 0.452 0.443 3.1e-35
TAIR|locus:2009175 369 AT1G06650 [Arabidopsis thalian 0.890 0.441 0.443 6.5e-35
TAIR|locus:2148303 366 AT5G59540 [Arabidopsis thalian 0.918 0.459 0.465 8.3e-35
TAIR|locus:2176456 365 AT5G43440 [Arabidopsis thalian 0.945 0.473 0.418 2.2e-34
TAIR|locus:2824199 366 AT1G06645 [Arabidopsis thalian 0.918 0.459 0.447 9.5e-34
TAIR|locus:2148403 364 AT5G59530 [Arabidopsis thalian 0.890 0.447 0.458 1.5e-33
TAIR|locus:2009130 AT1G06620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 80/168 (47%), Positives = 108/168 (64%)

Query:    14 VTDYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNSQVPVIDL 73
             V   DR+  ++AFD+TK GVKGL+DAGI  IP IF  PP  L        ++  +P IDL
Sbjct:     8 VAALDRSTLLKAFDETKTGVKGLIDAGITEIPSIFRAPPATLTSPKPPSSSDFSIPTIDL 67

Query:    74 DGVRGNKL--EEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEF 131
              G   + +    +V+++  AAE WGFFQV+NHGIP++VLE++I+GIR+F+EQD E+KK F
Sbjct:    68 KGGGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGF 127

Query:   132 YTRDRARNVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEVC 179
             Y+RD A  + ++SNFDL  S  ANWRDTL     A     P + P  C
Sbjct:   128 YSRDPASKMVYSSNFDLFSSPAANWRDTLGCYT-APDPPRPEDLPATC 174
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
TAIR|locus:2052781 AT2G30830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040045 AT2G25450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052796 AT2G30840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018349 AT1G04350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009175 AT1G06650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148303 AT5G59540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176456 AT5G43440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2824199 AT1G06645 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148403 AT5G59530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 1e-21
PLN02947 374 PLN02947, PLN02947, oxidoreductase 9e-19
PLN02393 362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 5e-18
PLN02639 337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-17
PLN02912 348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 9e-16
PLN03178 360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-15
PLN02758 361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 4e-15
PLN02276 361 PLN02276, PLN02276, gibberellin 20-oxidase 5e-13
PLN02904 357 PLN02904, PLN02904, oxidoreductase 2e-11
PLN02403 303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 4e-11
PLN02704 335 PLN02704, PLN02704, flavonol synthase 5e-11
COG3491 322 COG3491, PcbC, Isopenicillin N synthase and relate 4e-10
PLN02750 345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 8e-10
PLN02254 358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-09
PLN02216 357 PLN02216, PLN02216, protein SRG1 3e-09
PLN02515 358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 8e-08
PLN02299 321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 1e-07
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 3e-07
PLN02365 300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 3e-07
PLN02997 325 PLN02997, PLN02997, flavonol synthase 3e-05
PTZ00273 320 PTZ00273, PTZ00273, oxidase reductase; Provisional 3e-05
PLN02984 341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 4e-05
PLN00417 348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 5e-05
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information 
 Score = 84.6 bits (210), Expect = 1e-21
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 68  VPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVEL 127
           +PVIDL G   ++   +  ++  A   WGFFQ+VNHGIP  +++ + E  R+F    +E 
Sbjct: 1   IPVIDLSGDPEDR-AAVAAELGEACREWGFFQLVNHGIPEELIDRLFEAAREFFALPLEE 59

Query: 128 KKEFYTRDRARNVRFNSNFDLHYSRTANWRDTLTISALASTD----LDPNEYPE 177
           K ++      R             +  +W+++  +      D      PN +P+
Sbjct: 60  KLKYARSGGNRGYGSLGAEKTDGKKVLDWKESFDLGREPPEDDPPLRGPNLWPD 113

This is the highly conserved N-terminal region of proteins with 2-oxoglutarate/Fe(II)-dependent dioxygenase activity. Length = 113
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 183
PLN02904 357 oxidoreductase 99.97
PLN02947 374 oxidoreductase 99.97
PLN02758 361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.97
PLN02216 357 protein SRG1 99.97
PLN02912 348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.96
PLN02393 362 leucoanthocyanidin dioxygenase like protein 99.96
PLN03178 360 leucoanthocyanidin dioxygenase; Provisional 99.96
PLN02639 337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.95
PLN02254 358 gibberellin 3-beta-dioxygenase 99.95
PLN02704 335 flavonol synthase 99.95
PLN02515 358 naringenin,2-oxoglutarate 3-dioxygenase 99.95
PLN00417 348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.95
PLN02276 361 gibberellin 20-oxidase 99.94
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.94
KOG0143 322 consensus Iron/ascorbate family oxidoreductases [S 99.94
PLN03176120 flavanone-3-hydroxylase; Provisional 99.93
PLN02750 345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.93
PTZ00273 320 oxidase reductase; Provisional 99.9
PLN02485 329 oxidoreductase 99.89
PLN02997 325 flavonol synthase 99.89
PLN02299 321 1-aminocyclopropane-1-carboxylate oxidase 99.88
PLN03002 332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.88
PLN02156 335 gibberellin 2-beta-dioxygenase 99.87
COG3491 322 PcbC Isopenicillin N synthase and related dioxygen 99.86
PLN02403 303 aminocyclopropanecarboxylate oxidase 99.86
PLN02984 341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.85
PLN02365 300 2-oxoglutarate-dependent dioxygenase 99.83
PLN03001 262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 98.46
>PLN02904 oxidoreductase Back     alignment and domain information 
Probab=99.97  E-value=7.3e-32  Score=234.36  Aligned_cols=158  Identities=23%  Similarity=0.419  Sum_probs=124.5

Q ss_pred             hhccccccHHHHHHCCCCCCCCcccCCCCCchhhhcc-CCCCCCcceeeCCCCCCC-cHHHHHHHHHHHHHHcceEEEEe
Q 041758           25 AFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTS-HQTNSQVPVIDLDGVRGN-KLEEIVDQVRAAAETWGFFQVVN  102 (183)
Q Consensus        25 ~~~~~~~~v~~l~~~g~~~vP~~yv~p~~~~p~~~~~-~~~~~~IPvIDls~l~~~-~~~~~~~~l~~A~~~~GFF~v~n  102 (183)
                      .++++++||++|+++|+.+||++|++|++++|..... ......||||||+.+..+ .+.+++++|+.||++||||||+|
T Consensus         8 ~~~~~~~~~~~l~~~~~~~vp~~~~~~~~~~p~~~~~~~~~~~~iPvIDls~~~~~~~r~~~~~~l~~Ac~~~GFf~v~n   87 (357)
T PLN02904          8 VLDDSFTSAMTLTNSGVPHVPDRYVLPPSQRPMLGSSIGTSTITLPVIDLSLLHDPLLRSCVIHEIEMACKGFGFFQVIN   87 (357)
T ss_pred             hhhccccchHHHHhcCCCCCCHHhCCCchhcccccccccccCCCCCEEECcccCCchhHHHHHHHHHHHHHHCceEEEEe
Confidence            3688999999999999999999999999998753111 112357999999987543 56788999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHHHhcCCHHHHHhhhccCCCCccccccCCCCCCCCCCCceeeeeeeeecCCCCCCCCCC---chh
Q 041758          103 HGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRARNVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYP---EVC  179 (183)
Q Consensus       103 HGI~~~li~~~~~~~~~FF~lp~eeK~~~~~~~~~~~~GY~~~~~~~~~~~~dwkE~~~~~~~~P~~~~~~~~P---~~~  179 (183)
                      |||+.++++++++++++||+||.|+|+++.........||+.........+.+|+|.+.+. ..|....++.||   +.|
T Consensus        88 HGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~-~~p~~~~~n~WP~~~p~f  166 (357)
T PLN02904         88 HGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDFIKHY-SHPLSKWINLWPSNPPCY  166 (357)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEEeeec-cCCcccccccCcccchHH
Confidence            9999999999999999999999999999864333334567655433345667999998876 666543345676   678


Q ss_pred             hccC
Q 041758          180 RYII  183 (183)
Q Consensus       180 re~~  183 (183)
                      |+++
T Consensus       167 r~~~  170 (357)
T PLN02904        167 KEKV  170 (357)
T ss_pred             HHHH
Confidence            8763

>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
2brt_A 355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-11
1gp5_A 356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-11
1gp4_A 356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-10
1w9y_A 319 The Structure Of Acc Oxidase Length = 319 1e-05
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 15/138 (10%)
Query: 33  VKGLVDAGIVNIPRIFIRPPEEL-------VEELTSHQTNSQVPVIDLDGVRGN--KLEE 83
           V+ L  +GI++IP+ +IRP EEL       +EE    +   QVP IDL  +  +  K+ E
Sbjct: 6   VESLAKSGIISIPKEYIRPKEELESINDVFLEE--KKEDGPQVPTIDLKNIESDDEKIRE 63
Query: 84  -IVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRA--RNV 140
             +++++ A+  WG   ++NHGIP +++E + +   +F    VE +KE Y  D+A  +  
Sbjct: 64  NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVE-EKEKYANDQATGKIQ 122
Query: 141 RFNSNFDLHYSRTANWRD 158
            + S    + S    W D
Sbjct: 123 GYGSKLANNASGQLEWED 140
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-46
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 4e-31
1dcs_A 311 Deacetoxycephalosporin C synthase; ferrous oxygena 3e-17
1odm_A 331 Isopenicillin N synthase; antibiotic biosynthesis, 4e-15
3oox_A 312 Putative 2OG-Fe(II) oxygenase family protein; stru 7e-15
3on7_A 280 Oxidoreductase, iron/ascorbate family; structural 4e-13
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  155 bits (393), Expect = 1e-46
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 12/160 (7%)

Query: 33  VKGLVDAGIVNIPRIFIRPPEEL-----VEELTSHQTNSQVPVIDLDGVRGN---KLEEI 84
           V+ L  +GI++IP+ +IRP EEL     V      +   QVP IDL  +  +     E  
Sbjct: 7   VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66

Query: 85  VDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRARNVR-FN 143
           +++++ A+  WG   ++NHGIP +++E + +   +F    VE K+++        ++ + 
Sbjct: 67  IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126

Query: 144 SNFDLHYSRTANWRDTLTISALASTDLDPN---EYPEVCR 180
           S    + S    W D     A      D +   + P    
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 166
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query183
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 99.97
3oox_A 312 Putative 2OG-Fe(II) oxygenase family protein; stru 99.9
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 99.9
1dcs_A 311 Deacetoxycephalosporin C synthase; ferrous oxygena 99.89
3on7_A 280 Oxidoreductase, iron/ascorbate family; structural 99.88
1odm_A 331 Isopenicillin N synthase; antibiotic biosynthesis, 99.86
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=99.97  E-value=1.7e-31  Score=230.68  Aligned_cols=152  Identities=25%  Similarity=0.456  Sum_probs=121.1

Q ss_pred             cccHHHHHHCCCCCCCCcccCCCCCchhhhc---cC--CCCCCcceeeCCCCCC-C--cHHHHHHHHHHHHHHcceEEEE
Q 041758           30 KAGVKGLVDAGIVNIPRIFIRPPEELVEELT---SH--QTNSQVPVIDLDGVRG-N--KLEEIVDQVRAAAETWGFFQVV  101 (183)
Q Consensus        30 ~~~v~~l~~~g~~~vP~~yv~p~~~~p~~~~---~~--~~~~~IPvIDls~l~~-~--~~~~~~~~l~~A~~~~GFF~v~  101 (183)
                      ..+||+|+++|+.+||++|++|+++++....   ..  .....||||||+.+.+ +  .+.+++++|++||++||||||+
T Consensus         4 ~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~   83 (356)
T 1gp6_A            4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   83 (356)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             cccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEe
Confidence            4689999999999999999999887765311   00  0123699999999864 2  4678999999999999999999


Q ss_pred             eCCCChhHHHHHHHHHHHHhcCCHHHHHhhhccCC-CCccccccCCCCCCCCCCCceeeeeeeeecCCC-CCCCCCC---
Q 041758          102 NHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDR-ARNVRFNSNFDLHYSRTANWRDTLTISALASTD-LDPNEYP---  176 (183)
Q Consensus       102 nHGI~~~li~~~~~~~~~FF~lp~eeK~~~~~~~~-~~~~GY~~~~~~~~~~~~dwkE~~~~~~~~P~~-~~~~~~P---  176 (183)
                      ||||+.++++++++.+++||+||.|+|+++..... ....||+........+..||+|+|.+. ..|.. ..++.||   
T Consensus        84 nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~-~~p~~~~~~~~wP~~~  162 (356)
T 1gp6_A           84 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHL-AYPEEKRDLSIWPKTP  162 (356)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEE-EESGGGCCGGGSCCSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeee-cCCccccccccCCCcc
Confidence            99999999999999999999999999999864433 357899877655566789999999998 77742 1223454   


Q ss_pred             chhhcc
Q 041758          177 EVCRYI  182 (183)
Q Consensus       177 ~~~re~  182 (183)
                      +.||++
T Consensus       163 ~~fr~~  168 (356)
T 1gp6_A          163 SDYIEA  168 (356)
T ss_dssp             TTHHHH
T ss_pred             hhhhHH
Confidence            578875
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 183
d1gp6a_ 349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-27
d1w9ya1 307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-21
d1dcsa_ 311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 6e-17
d1odma_ 329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-14
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  103 bits (258), Expect = 1e-27
 Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 9/160 (5%)

Query: 31  AGVKGLVDAGIVNIPRIFIRPPEEL-----VEELTSHQTNSQVPVIDLDGVRGN---KLE 82
             V+ L  +GI++IP+ +IRP EEL     V      +   QVP IDL  +  +     E
Sbjct: 4   ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRE 63

Query: 83  EIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRARNVR- 141
             +++++ A+  WG   ++NHGIP +++E + +   +F    VE K+++        ++ 
Sbjct: 64  NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 123

Query: 142 FNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEVCRY 181
           + S    + S    W D     A      D + +P+    
Sbjct: 124 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSD 163
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query183
d1gp6a_ 349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 99.96
d1w9ya1 307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 99.87
d1dcsa_ 311 Deacetoxycephalosporin C synthase {Streptomyces cl 99.8
d1odma_ 329 Isopenicillin N synthase {Emericella nidulans [Tax 99.71
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=2.6e-30  Score=218.52  Aligned_cols=152  Identities=25%  Similarity=0.456  Sum_probs=117.7

Q ss_pred             cccHHHHHHCCCCCCCCcccCCCCCchhhh-----ccCCCCCCcceeeCCCCCCC---cHHHHHHHHHHHHHHcceEEEE
Q 041758           30 KAGVKGLVDAGIVNIPRIFIRPPEELVEEL-----TSHQTNSQVPVIDLDGVRGN---KLEEIVDQVRAAAETWGFFQVV  101 (183)
Q Consensus        30 ~~~v~~l~~~g~~~vP~~yv~p~~~~p~~~-----~~~~~~~~IPvIDls~l~~~---~~~~~~~~l~~A~~~~GFF~v~  101 (183)
                      ...||+|+++|+.+||++||||++++|.+.     .......+||||||+.+.++   .|++++++|++||++||||||+
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~   82 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   82 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            457999999999999999999999887641     12345668999999998753   5778999999999999999999


Q ss_pred             eCCCChhHHHHHHHHHHHHhcCCHHHHHhhhccCCC-CccccccCCCCCCCCCCCceeeeeeeeecCCC-CCCCCCC---
Q 041758          102 NHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRA-RNVRFNSNFDLHYSRTANWRDTLTISALASTD-LDPNEYP---  176 (183)
Q Consensus       102 nHGI~~~li~~~~~~~~~FF~lp~eeK~~~~~~~~~-~~~GY~~~~~~~~~~~~dwkE~~~~~~~~P~~-~~~~~~P---  176 (183)
                      ||||+.++++++++++++||+||.|+|+++...... ...||+...........+|.+.+... ..+.. ..++.||   
T Consensus        83 nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~n~wp~~~  161 (349)
T d1gp6a_          83 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHL-AYPEEKRDLSIWPKTP  161 (349)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEE-EESGGGCCGGGSCCSS
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhccc-cccccccccccccccc
Confidence            999999999999999999999999999998643322 23345555544566678899887765 45532 2233443   


Q ss_pred             chhhcc
Q 041758          177 EVCRYI  182 (183)
Q Consensus       177 ~~~re~  182 (183)
                      +.||+.
T Consensus       162 ~~f~e~  167 (349)
T d1gp6a_         162 SDYIEA  167 (349)
T ss_dssp             TTHHHH
T ss_pred             chHHHH
Confidence            567654
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure