Citrus Sinensis ID: 041759

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
Protein Sequence
HTMADPSPLLCQSNSCTDDQESSDQRSHKQSISSLDEIVEQAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKDSVTV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccccccccccccccEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHcccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHccccHHHcHHHHHHcccccccccccccccccHcccccHHHcEEEEccccccccccHHEEcccccHHccccccccccccccccccccEEEEcccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcHHcHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHccccccccHccHHHHHHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHEcHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHEEEEHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHcccccccHHHHHHHcccccc
Coil and Loop (DISEMBL)
htmadpspllcqsnsctddqessdqrshkQSISSLDEIVEQAILVSLASLFDSQQSFISVYteaeptwhclnnttcssasnicmfpksswawdgnpttTALTIISEWGLECSSAFIkglpaashftGCLLGIVFLATLAdsslgrknLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSgisratigTCTIVLLTEkvgtewrglVGILDSFFFTIGTltlpaiaytnrsssWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSlspikdsnqlsLSLVSAvsfghepaasskessFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALleipnlastipsfFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVaagsnnefvSYGVFGLVIICCGFfviclpetrgsslcdtidqrehkdsvtv
Flexible Loop (DISEMBL)
htmadpspllcqsnSCTDDQESSDQRSHKQSISSLDEIVEQAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSlspikdsnqLSLSLVSAVSFGHEpaasskessflsSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETrgsslcdtidqrehkdsvtv
Low Complexity Region (SEG)
HTMADPSPLLCQSNSCTDDQESSDQRSHKQSISSLDEIVEQAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAAsskessflssIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKDSVTV
Disordered region (IsUnstruct)
************************************EIVEQAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIK*********************************FLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLC**************
Disordered Region (DISOPRED)
***ADPSPLLCQSNSCTDDQESSDQRSHKQSISSLDEIVEQAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSL**********************IRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQ**H******
Disordered Region (DISEMBL)
********LLCQSN******************SSLDEIVEQAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSF*************LSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTID**********
Disordered Region (DISPRO)
HTMADPSPLLCQSNSCTDDQESSDQRSHKQSISSLDEIVEQAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSK*SSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHK*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
HTMADPSPLLCQSNSCTDDQESSDQRSHKQSISSLDEIVEQAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKDSVTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	525	2.2.26 [Sep-21-2011]
O64515	527	Organic cation/carnitine	yes	no	0.961	0.958	0.474	1e-137
Q9SA38	518	Organic cation/carnitine	no	no	0.933	0.945	0.480	1e-135
Q9SA36	521	Organic cation/carnitine	no	no	0.946	0.953	0.386	1e-105
Q9SAK7	515	Organic cation/carnitine	no	no	0.952	0.970	0.388	1e-102
Q9CAT6	539	Organic cation/carnitine	no	no	0.948	0.923	0.347	2e-76
Q9LHQ6	526	Organic cation/carnitine	no	no	0.883	0.882	0.292	2e-52
Q66J54	558	Solute carrier family 22	N/A	no	0.899	0.845	0.263	1e-34
O76082	557	Solute carrier family 22	yes	no	0.765	0.721	0.287	9e-34
Q9Z0E8	557	Solute carrier family 22	yes	no	0.767	0.723	0.280	5e-33
O57379	562	Solute carrier family 22	N/A	no	0.843	0.788	0.258	9e-33

>sp|O64515|OCT2_ARATH Organic cation/carnitine transporter 2 OS=Arabidopsis thaliana GN=OCT2 PE=2 SV=1

 Score =  489 bits (1259), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 251/529 (47%), Positives = 361/529 (68%), Gaps = 24/529 (4%)

Query: 3   MADPS-PLLCQSNSCTDDQESSDQRSHKQSISSLDEIVEQAILVSLASLFDSQQSFISVY 61
           MA+P+ PLL  SNS +         S+  S      +  QA LVS + +FD+QQ+FISV+
Sbjct: 1   MAEPTQPLLTDSNSSSPRSLDDTIESYIGSFGWAQFL--QAALVSFSGVFDAQQTFISVF 58

Query: 62  TEAEPTWHCLN-NTTC-SSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGL 119
           T++EPTWHC + N+ C  S SNIC+ PK++W+WD +P    +++ISEWGL+C+ +F+KGL
Sbjct: 59  TDSEPTWHCTDSNSICHESISNICILPKTAWSWDYSPH---VSVISEWGLQCAGSFVKGL 115

Query: 120 PAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS 179
           P +S F GCL+G + L+TLADSSLGRKN+LFLSCL M+++T LT+FS N+W+Y++LRF +
Sbjct: 116 PESSFFVGCLIGGLVLSTLADSSLGRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFVN 175

Query: 180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLW 239
           G  RATIGTC +VL TE VG +WRG VGI+  F F +G L+LP +AY NR SSW I+Y W
Sbjct: 176 GFGRATIGTCALVLSTELVGKKWRGRVGIMSFFGFMLGFLSLPLMAYMNRGSSWRILYAW 235

Query: 240 TSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSN-----QLSLSLVSA 294
           TSIPT++Y  L+  FV ESPRWLF++GR+EEA+ ++K ++ I  ++      +S+S  S+
Sbjct: 236 TSIPTIIYCVLVRFFVCESPRWLFVRGRREEAISILKRVASIPSTDVSSGGAISMSF-SS 294

Query: 295 VSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFD 354
           + F  +    S   +  ++++ L  +RWAL+R  A+M   FGIG+VYYGM L + NL F+
Sbjct: 295 LPFEEDEEKPSTNVNIFTTMKVLVEKRWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFN 354

Query: 355 IYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVAND-- 412
           IYL   FNAL++       +P+  +T FL+ K +R+++L+    + G+ S++    ++  
Sbjct: 355 IYLSAAFNALMD-------LPANLITLFLVDKLSRRNALIGFTALGGVSSVLIFALHNMR 407

Query: 413 ISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSV 472
           I N G  +++ LEL S FSA  A+ +  IY IELFPTCVRNSA ++ R A++   +FS +
Sbjct: 408 IGNHGA-LQLALELISYFSACSAFNMEMIYTIELFPTCVRNSAIAMARQALVLGGVFSPI 466

Query: 473 LVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKD 521
           +VAAG  N F S+G+FGL I   G F + LPETRGS LCDT+D+ E KD
Sbjct: 467 MVAAGRKNAFWSFGLFGLAIGLLGLFAVGLPETRGSDLCDTMDEEECKD 515

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA38|OCT3_ARATH Organic cation/carnitine transporter 3 OS=Arabidopsis thaliana GN=OCT3 PE=2 SV=1

 Score =  482 bits (1240), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/537 (48%), Positives = 356/537 (66%), Gaps = 47/537 (8%)

Query: 3   MADPS-PLLCQSNSCTDDQESSDQRSHKQSISSLDEIVE------------QAILVSLAS 49
           MAD + PLL   NS           S+     SL+E +E            QA LVS A 
Sbjct: 1   MADSTRPLLSDFNS---------SESNLPPPRSLEETIERCIGDFGWAQFLQAALVSFAW 51

Query: 50  LFDSQQSFISVYTEAEPTWHCLN----NTTC-SSASNICMFPKSSWAWDGNPTTTALTII 104
            FD+QQ+FI+V+T+++P WHC N    ++ C +S+SN+C  P  +W+WD NP    ++II
Sbjct: 52  FFDAQQTFITVFTDSQPMWHCDNSDRVDSVCNTSSSNLCTLPNQTWSWDLNP---HVSII 108

Query: 105 SEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTI 164
           SEWGL+C+ +F+KG PA+S F GCL+G + L+TLADSSLGRKN+L LSCL MS+++ LT 
Sbjct: 109 SEWGLQCAGSFLKGFPASSFFLGCLIGGLALSTLADSSLGRKNMLLLSCLIMSLSSMLTA 168

Query: 165 FSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI 224
           FS ++W+Y+ LRF +G  RATIGTC +VL TE VG +WRG VG +  F FT+G L+LP +
Sbjct: 169 FSTSIWVYAFLRFLNGCGRATIGTCALVLSTELVGKKWRGQVGAMGFFCFTLGFLSLPML 228

Query: 225 AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDS 284
            Y N  +SW  +Y+WTSIPTL+Y  L+  FV ESPRWL ++GR+EEAV +++S++    S
Sbjct: 229 GYINEGNSWRNLYVWTSIPTLIYCCLVRSFVRESPRWLIVKGRKEEAVSILQSIA----S 284

Query: 285 NQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGM 344
           N +++S  + + F  E   S        +++ L  + W+  R LA MV GFGIG+VYYGM
Sbjct: 285 NAITMSFTN-LCFEVENDQSKSNPDVYDALKILVRKSWSFRRLLAAMVVGFGIGMVYYGM 343

Query: 345 TLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICS 404
            L + NL F++YLGVVFNAL       S  P+F +TFF I K NR+ +L+    +SGI S
Sbjct: 344 PLALTNLNFNLYLGVVFNAL-------SEFPAFLITFFFIDKINRRDALIGFTALSGISS 396

Query: 405 -IMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAI 463
            ++AV+   + +    ++I LEL S FSA  A+ +  IY IE+FPTCVRNSA S++R A+
Sbjct: 397 ALIAVLGQQLGS----LQIVLELVSFFSACTAFNMTLIYTIEMFPTCVRNSAISMVRQAL 452

Query: 464 IFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHK 520
           +F  +FS V+VAAG  N+F SYG+FGL+I  CG FV  LPETRGS LCDT+D+ E+K
Sbjct: 453 VFGGVFSPVMVAAGRENQFWSYGLFGLIIGLCGLFVFGLPETRGSVLCDTMDEEEYK 509

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA36|OCT6_ARATH Organic cation/carnitine transporter 6 OS=Arabidopsis thaliana GN=OCT6 PE=2 SV=1

 Score =  384 bits (986), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/536 (38%), Positives = 330/536 (61%), Gaps = 39/536 (7%)

Query: 3   MADP--SPLLCQSNSCTDDQESSDQRSHKQSISSLDEIVEQAI------------LVSLA 48
           MADP   PLL   +  TDD    ++++  ++++  D+IVEQ++            LV LA
Sbjct: 1   MADPISEPLL---SHLTDDS-GVNEKTRLEALT-FDKIVEQSLSDFGFWQFFQISLVGLA 55

Query: 49  SLFDSQQSFISVYTEAEPTWHCLNNTTCS-SASNICMFPKSSWAWDGNPTTTALTIISEW 107
            LFD+QQ FI+VYT+A PTWHCLN+T C  SAS+IC  P+S+W WDG   +   ++ISE+
Sbjct: 56  LLFDAQQIFITVYTDAYPTWHCLNHTICDPSASDICKLPRSAWEWDGG--SQGKSVISEF 113

Query: 108 GLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN 167
           GLECSS+ ++G+P+++ + G ++G  FLA + D SLGRK L+  S   MS+ +   IFS 
Sbjct: 114 GLECSSSLLRGMPSSAFYIGAIVGGFFLALIPDDSLGRKKLVLFSTFAMSITSISVIFST 173

Query: 168 NLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYT 227
           N+WIY+ L+F  G SR+   +  +VL++E+V T WR    ++    F +G ++L  IA+ 
Sbjct: 174 NVWIYTFLKFIIGFSRSQTWSYALVLISERVSTRWRPRATMIPFTLFVLGFMSLSGIAFL 233

Query: 228 NRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQL 287
            + SSW  +YL+TS+P + Y   LY+F  ESPRWL MQG+ +EA++V+  +SP K+   L
Sbjct: 234 AQDSSWRYLYLYTSVPAVFYCIFLYLFALESPRWLHMQGKDKEAIDVLTKMSP-KEKAYL 292

Query: 288 SLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLG 347
             S+VS +    E    + E +   SI++ F R+WA  R L +M+  FG+G+ YYG+ L 
Sbjct: 293 E-SVVSKLPLKQE----NFEQAPTYSIKDFFFRKWAFRRILVVMIIMFGLGISYYGVPLA 347

Query: 348 IENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMA 407
             ++  +IYL    NAL+E       +P+F +T  L++++NR+SS+LV  ++ G   ++ 
Sbjct: 348 ARDIDVNIYLSETLNALVE-------LPTFVITPILLERFNRRSSVLVNTLLGGASGVLC 400

Query: 408 VVANDISNAGK-RMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFA 466
            V   +S  GK  +    EL + F A I + ++ ++ +E+FPTCVR+SAT + R A++  
Sbjct: 401 FV---LSILGKTEIAFAFELGTFFCARIGFNLMAVFMVEMFPTCVRSSATMMFRQALVVG 457

Query: 467 AIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKDS 522
                ++ + G     VS+ +FG+ +   G FV+ LPET+G SLCD+++++E +D 
Sbjct: 458 GACCPLIASIGRYIPSVSFAIFGIAMSGLGMFVLILPETKGLSLCDSMEEQEKRDQ 513

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK7|OCT5_ARATH Organic cation/carnitine transporter 5 OS=Arabidopsis thaliana GN=OCT5 PE=2 SV=1

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/527 (38%), Positives = 327/527 (62%), Gaps = 27/527 (5%)

Query: 3   MADPSPLLCQSNSCTDDQESSDQRSHKQSISSLDEI----VEQAILVSLASLFDSQQSFI 58
           MAD    L  ++   D+  SS     K    SL +       Q +LV LA  FDSQQ FI
Sbjct: 1   MADSLAPLLPTHIEEDEDTSSPLTFDKILEKSLSDFGFSQFLQIVLVGLALTFDSQQIFI 60

Query: 59  SVYTEAEPTWHCLNNTTCSSAS-NICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIK 117
           +V+T+A PTWHCL++T C+ A+ +IC  P+S+W WDG       ++ISE+ LECSS+F++
Sbjct: 61  TVFTDAYPTWHCLDHTICNPATTDICKIPRSAWDWDGG--FKGKSVISEFDLECSSSFLR 118

Query: 118 GLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIF-SNNLWIYSLLR 176
            LP+++ + G ++G V LA + D SLGRK LLF S   MS+ T ++IF S+N+WIYS L+
Sbjct: 119 SLPSSTFYVGSIVGGVVLAMIPDGSLGRKQLLFFSSFAMSL-TGISIFLSSNIWIYSFLK 177

Query: 177 FFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTII 236
           F  G +R+  GT  +VL++E++ T+WR    ++    F +G ++L  IAY  R +SW ++
Sbjct: 178 FVIGFARSQTGTYALVLISERISTKWRPRATMVPFTLFVLGFMSLSGIAYLVRHASWKVL 237

Query: 237 YLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVS 296
           YL TSIP  ++S  +Y F  ESPRWL ++G+ +EA+EV+K +SP   +N+     + +VS
Sbjct: 238 YLCTSIPAGIHSIFIYFFALESPRWLHLEGKNKEAIEVLKRISP---ANR---GYLESVS 291

Query: 297 FGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIY 356
               P  + +++S   SI++LF+ +WA  R   +M+  FG+G+ YYG+ L + ++  +IY
Sbjct: 292 SRLRPKETLEQTSSY-SIKDLFIIKWAFRRVTLVMIIMFGLGMSYYGVPLAVRDIKVNIY 350

Query: 357 LGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNA 416
           +    NA++E       +P+F +T  L+++++R+SS+LV  +I G   ++  V   +S  
Sbjct: 351 MSEALNAMVE-------LPTFVVTPILLEQFSRRSSVLVNCLIGGASGVLCFV---MSLY 400

Query: 417 GK-RMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVA 475
           G+ ++   LEL S F A I + ++ IY +ELFPTCVRNSAT ++R A++       ++ +
Sbjct: 401 GRTKIAFALELGSFFCARIGFNLMAIYLVELFPTCVRNSATMMLRQALVVGGACCPLIAS 460

Query: 476 AGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKDS 522
            G N   +S+ VFG  +   G F + LPET+G SLCDT++++E +D 
Sbjct: 461 LGRNVPSLSFAVFGFAMSGLGLFALLLPETKGLSLCDTMEEQEQRDQ 507

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAT6|OCT1_ARATH Organic cation/carnitine transporter 1 OS=Arabidopsis thaliana GN=OCT1 PE=2 SV=1

 Score =  286 bits (733), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 189/544 (34%), Positives = 297/544 (54%), Gaps = 46/544 (8%)

Query: 3   MADPSPLLCQSNSCTDDQESSDQRS--HKQSISSLDEIVEQ------------AILVSLA 48
           + +  P +   +S T+  E++ Q+   + +   ++DE++EQ            A+LVS+A
Sbjct: 11  LMETPPNISNDSSATEKGEATRQQQLPNNRYALTVDEVIEQHIGALGFAQILHALLVSIA 70

Query: 49  SLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWG 108
            +FD+Q + IS++++A+P    L        +++C      W W G  + T   ++SEW 
Sbjct: 71  WIFDAQTTLISIFSDAQPAARLLATGAIVEGASLCGLASGEWEWIGPKSDT---VVSEWN 127

Query: 109 LECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNN 168
           L C   F+  +P+   F G L G      LADS  GRK  L LSC+   V      FS N
Sbjct: 128 LICQHKFLVAVPSTLFFIGSLFGSGVYGYLADSWFGRKKTLLLSCVLTFVTAFAISFSPN 187

Query: 169 LWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN 228
           +W+Y+ LRF +G  R+ IG+C IVL TE VG +WRG VG    FFFT+G L+LP +AY  
Sbjct: 188 VWVYAFLRFANGFFRSGIGSCCIVLATEIVGKKWRGQVGQYGFFFFTLGFLSLPLMAYLE 247

Query: 229 RSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQL- 287
           R  SW  +Y   S   L Y+  L  F  ESPRWL ++GR +EA+ V+K L+ + +  QL 
Sbjct: 248 R-KSWRNLYRIISFLPLGYAVCLLPFAYESPRWLLVKGRNKEAMVVLKKLARL-NGKQLP 305

Query: 288 -SLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTL 346
             LSLV  +    +  +SS+         + +  +WA++R + +M+ GFG G VYYG+ L
Sbjct: 306 ADLSLVDPIPERDDQTSSSE---------KFWKTKWAVKRIIMVMMAGFGSGFVYYGIQL 356

Query: 347 GIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRK-----SSLLVLFIISG 401
             ENL F++YL V  NAL+E        P+ F+  FL+   NR+     SS L  F    
Sbjct: 357 NAENLNFNLYLTVAVNALME-------FPAVFIGSFLLGVMNRRPLFSNSSYLAGFACL- 408

Query: 402 ICSIMAV--VANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIM 459
           +C+++++  V   IS A K +++ +E     ++  AY V+++Y +ELFPT VRN+A S++
Sbjct: 409 LCAVLSIHRVIRAISVA-KWLQLAVEAVGFMASSTAYDVLYVYCVELFPTNVRNTAVSLL 467

Query: 460 RLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREH 519
           R A +  A  + +LVA G  +  +S+ VFG+  +  G   + L ETR + L +T+ Q+  
Sbjct: 468 RQAFMLGASAAPLLVALGRESAMMSFIVFGVASVLSGIVSLWLRETRNAPLYETLAQQGK 527

Query: 520 KDSV 523
            + +
Sbjct: 528 AEEI 531

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Regulates lateral root development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHQ6|OCT4_ARATH Organic cation/carnitine transporter 4 OS=Arabidopsis thaliana GN=OCT4 PE=2 SV=1

 Score =  207 bits (527), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/486 (29%), Positives = 241/486 (49%), Gaps = 22/486 (4%)

Query: 39  VEQAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTT 98
           ++  +L  +A   ++  + + ++ + EP W C+  + C   S  C    SSW W     +
Sbjct: 50  LKHFVLTCIAWALEAFHTMVMIFADQEPEWRCVG-SDCRVGSLNCELDPSSWEWTAGKGS 108

Query: 99  TALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSV 158
           +    +SEWGL C   +  GL  A  F GC++G      L+DS LGRK  L + C+  ++
Sbjct: 109 ST---VSEWGLICGDKYKVGLVQALFFAGCMIGAGVFGHLSDSKLGRKGSLTVVCIINAI 165

Query: 159 ATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGT 218
               T FS N W Y +LRF +G S   +G    VL TE +G   RG+ G+   +FF+ G 
Sbjct: 166 FGIATAFSPNYWTYVVLRFLTGFSTGGVGLTAFVLATEPIGPSKRGVAGMSTFYFFSAGI 225

Query: 219 LTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSL 278
             L  IAY  R  SW  +++ +S+P+L++  ++  F+SESPRW  ++G+ +EA++++ S+
Sbjct: 226 AVLSGIAYVFR--SWRELFIVSSLPSLLFLLIVIPFISESPRWYLVRGKVDEAMKLMHSI 283

Query: 279 SPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIG 338
           +   +   +   +  A+    E     + ++   S++++ +      R +  +   F + 
Sbjct: 284 AK-TNGRHIPAGVTLALDDDVENNNGERNTAVEGSLKDVILSPLMRMRLVISVAISFTVS 342

Query: 339 VVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFI 398
           +VYYG++L + NL  ++YL V  NA+       S +P+F +T  L+ K+ RK   +    
Sbjct: 343 IVYYGLSLNVGNLKTNLYLNVFVNAV-------SEMPAFAITAVLLDKYGRKPLSIGTQW 395

Query: 399 ISGICSIMAVVANDISNAG--KRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSAT 456
            S    +  +V   +  AG  K +R+   +  +F     Y ++FIY  ELFPT VRN+A 
Sbjct: 396 FS---CVFCLVGFSVWGAGPWKSVRMVSGVLGIFGMAGTYNLLFIYIAELFPTVVRNAAL 452

Query: 457 SIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQ 516
                A    AI +  +V  G   E + +GVF +  +  G     LPET    L DT+  
Sbjct: 453 GCATQAAQMGAILAPFVVVLG---EELPFGVFAVCGLVGGGLAFYLPETLNKPLYDTMFG 509

Query: 517 REHKDS 522
               +S
Sbjct: 510 MHEAES 515

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|Q66J54|S226A_XENLA Solute carrier family 22 member 6-A OS=Xenopus laevis GN=slc22a6-a PE=2 SV=1

 Score =  148 bits (373), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 136/517 (26%), Positives = 233/517 (45%), Gaps = 45/517 (8%)

Query: 11  CQSNSCTDDQESSDQRSHKQSISSLDEIVEQAILVSLASLFDSQQSFISVYTEAEPTWHC 70
           C++N       ++D+  + +  + LD               D Q      Y E +  W  
Sbjct: 49  CKANDTWYQSNNTDRMGYVRLSAPLDA--------------DGQPDRCLEYVEVQ--WMI 92

Query: 71  LN-NTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCL 129
              N T +++S +   P +   W+ +      TII+EW L C     + L  + +  G L
Sbjct: 93  AGTNRTWANSSQLATRPCTE-GWEYSKDEFNSTIITEWDLVCGHKNRRQLAQSVYMGGVL 151

Query: 130 LGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTC 189
           +G + L  L+D   GR+ LL  S   M+V+   + FS N   Y + RF +G++ + IG  
Sbjct: 152 VGAIILGGLSDR-YGRRALLIWSYFQMAVSGLCSAFSPNYLSYCIFRFLTGMALSGIGLN 210

Query: 190 TIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSG 249
           T  L+ E V T  R + G L  F +T+G L L  +AY  R   W  + L  S+P  ++  
Sbjct: 211 TTALIVEWVPTRVRTITGTLAGFSYTVGQLLLAGLAYAMRDWRW--LQLCVSLPFFIF-- 266

Query: 250 LLY-IFVSESPRWLFMQGRQEEAVEVIKSLSPI--KDSNQLSLSLVSAVSFGHEPAASSK 306
            LY  +  ES RWL + G+ E AV+ +K ++ +  K+     ++L S  S   +  A +K
Sbjct: 267 FLYSWWFPESARWLVLSGKTERAVKEMKKVAKLNGKEEEGEKITLESMRSDMIKELACAK 326

Query: 307 ES-SFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYL-GVVFNAL 364
            S + +  IR   +RR     + AL +  F     YYG+ + ++N    IYL  V+F A+
Sbjct: 327 SSYTVIDLIRTSTIRR----ISCALSLVWFSTSFAYYGLAMDLQNFNVSIYLIQVIFGAV 382

Query: 365 LEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVAND-ISNAGKRMRIG 423
                + ST    ++         RK + L+  I+ G+     ++AN  + +  + +R G
Sbjct: 383 DFPAKIFSTTAMIYV--------GRKFTQLMSLILGGV----VILANSFVPHEMQTVRTG 430

Query: 424 LELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFV 483
           + +        +++ +F+Y  EL+PT +R S   +         I + ++   G    F+
Sbjct: 431 MAVFGKGCLAASFSCVFLYTTELYPTVIRQSGLGLCSTMARIGGIVAPLVKILGEYYPFL 490

Query: 484 SYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHK 520
              ++G   I  G  V  LPET    L DTI++ E +
Sbjct: 491 PLVIYGGAPIISGLCVFFLPETVNKPLPDTIEEVEKR 527

Involved in the renal elimination of endogenous and exogenous organic anions. Mediates the sodium-independent uptake of p-aminohippurate (PAH), 2,3-dimercapto-1-propanesulfonic acid (DMPS), cidofovir, adefovir, 9-(2-phosphonylmethoxyethyl) guanine (PMEG), 9-(2-phosphonylmethoxyethyl) diaminopurine (PMEDAP), ochratoxin (OTA), acyclovir (ACV), 3'-azido-3-'deoxythymidine (AZT), cimetidine (CMD), 2,4-dichloro-phenoxyacetate (2,4-D), hippurate (HA), indoleacetate (IA), indoxyl sulfate (IS) and 3-carboxy-4-methyl-5-propyl-2-furanpropionate (CMPF) and edaravone sulfate. PAH uptake is inhibited by p-chloromercuribenzenesulphonate (PCMBS), diethyl pyrocarbonate (DEPC), indomethacin, sulindac, diclofenac, carprofen, okadaic acid, benzothiazolylcysteine (BTC), S-chlorotrifluoroethylcysteine (CTFC), cysteine S-conjugates S-dichlorovinylcysteine (DCVC), furosemide, steviol, phorbol 12-myristate 13-acetate (PMA), calcium ionophore A23187, benzylpenicillin, bumetamide, losartan, probenecid, phenol red, urate, glutarate and alpha-ketoglutarate.

Xenopus laevis (taxid: 8355)

>sp|O76082|S22A5_HUMAN Solute carrier family 22 member 5 OS=Homo sapiens GN=SLC22A5 PE=1 SV=1

 Score =  145 bits (365), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 209/432 (48%), Gaps = 30/432 (6%)

Query: 91  AWDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLF 150
            W+ +      TI++EW L C   +   L  +  F G LLG      L+D   GRKN+LF
Sbjct: 116 GWEFSQDVYLSTIVTEWNLVCEDDWKAPLTISLFFVGVLLGSFISGQLSDR-FGRKNVLF 174

Query: 151 LSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILD 210
           ++    +  + L IFS N  ++ +L    G+ + +      VL TE +G   R +   L 
Sbjct: 175 VTMGMQTGFSFLQIFSKNFEMFVVLFVLVGMGQISNYVAAFVLGTEILGKSVRIIFSTLG 234

Query: 211 -SFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQE 269
              F+  G + LP  AY  R   W ++ +  ++P ++   L + F+ ESPRWL  QGR E
Sbjct: 235 VCIFYAFGYMVLPLFAYFIRD--WRMLLVALTMPGVLCVALWW-FIPESPRWLISQGRFE 291

Query: 270 EAVEVIKSLSPIKDSNQLSLSLVSAVSFGH---EPAASSKESSFLSSIRELFVRRWALER 326
           EA EVI     I+ + + +  +V +  F     +  +S K+ S   +I +L +R W +  
Sbjct: 292 EA-EVI-----IRKAAKANGIVVPSTIFDPSELQDLSSKKQQS--HNILDL-LRTWNIRM 342

Query: 327 -TLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQ 385
            T+  ++    I V Y+G++L   NL  DI++    +A++E+P       ++ L + L+Q
Sbjct: 343 VTIMSIMLWMTISVGYFGLSLDTPNLHGDIFVNCFLSAMVEVP-------AYVLAWLLLQ 395

Query: 386 KWNRKSSL-LVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAI 444
              R+ S+   LF+   +   M +V  D+      +   L +   F    A++++++Y  
Sbjct: 396 YLPRRYSMATALFLGGSVLLFMQLVPPDLYY----LATVLVMVGKFGVTAAFSMVYVYTA 451

Query: 445 ELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPE 504
           EL+PT VRN    +   A    +I S   V  G+ + F+ Y + G + I      + LPE
Sbjct: 452 ELYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAYDRFLPYILMGSLTILTAILTLFLPE 511

Query: 505 TRGSSLCDTIDQ 516
           + G+ L DTIDQ
Sbjct: 512 SFGTPLPDTIDQ 523

Sodium-ion dependent, high affinity carnitine transporter. Involved in the active cellular uptake of carnitine. Transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Also relative uptake activity ratio of carnitine to TEA is 11.3.

Homo sapiens (taxid: 9606)

>sp|Q9Z0E8|S22A5_MOUSE Solute carrier family 22 member 5 OS=Mus musculus GN=Slc22a5 PE=1 SV=1

 Score =  142 bits (359), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 198/431 (45%), Gaps = 28/431 (6%)

Query: 91  AWDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLF 150
            W+ +      TI++EW L C   +   L  +  F G L+G      L+D   GRKN+LF
Sbjct: 116 GWEYDKDVFLSTIVTEWDLVCKDDWKAPLTTSLFFVGVLMGSFISGQLSDR-FGRKNVLF 174

Query: 151 LSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILD 210
           L+    +  + L +FS N  ++++L    G+ + +      VL TE +    R +   L 
Sbjct: 175 LTMGMQTGFSFLQVFSVNFEMFTVLFVLVGMGQISNYVAAFVLGTEILSKSIRIIFATLG 234

Query: 211 -SFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQE 269
              F+  G + LP  AY  R   W ++ L  ++P  V  G L+ F+ ESPRWL  QGR +
Sbjct: 235 VCIFYAFGFMVLPLFAYFIRD--WRMLLLALTVPG-VLCGALWWFIPESPRWLISQGRIK 291

Query: 270 EAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSF---LSSIRELFVRRWALER 326
           EA  +I+  + I          + A S   +P+     +S    L  I +L   R     
Sbjct: 292 EAEVIIRKAAKING--------IVAPSTIFDPSELQDLNSTKPQLHHIYDLIRTRNIRVI 343

Query: 327 TLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQK 386
           T+  ++    I V Y+G++L   NL  DIY+     A +E+P       ++ L + L+Q 
Sbjct: 344 TIMSIILWLTISVGYFGLSLDTPNLHGDIYVNCFLLAAVEVP-------AYVLAWLLLQY 396

Query: 387 WNRKSSL-LVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIE 445
             R+ S+   LF+   +   M +V +++      +   L +   F    AY+++++Y  E
Sbjct: 397 LPRRYSISAALFLGGSVLLFMQLVPSELFY----LSTALVMVGKFGITSAYSMVYVYTAE 452

Query: 446 LFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPET 505
           L+PT VRN    +   A    +I S   V  G+ + F+ Y + G + I      +  PE+
Sbjct: 453 LYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAYDRFLPYILMGSLTILTAILTLFFPES 512

Query: 506 RGSSLCDTIDQ 516
            G  L DTIDQ
Sbjct: 513 FGVPLPDTIDQ 523

Sodium-ion dependent, high affinity carnitine transporter. Involved in the active cellular uptake of carnitine. Transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Also relative uptake activity ratio of carnitine to TEA is 11.3.

Mus musculus (taxid: 10090)

>sp|O57379|S22A6_PSEAM Solute carrier family 22 member 6 OS=Pseudopleuronectes americanus GN=SLC22A6 PE=1 SV=1

 Score =  142 bits (357), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 121/468 (25%), Positives = 210/468 (44%), Gaps = 25/468 (5%)

Query: 64  AEPTWHCLNNTTCSSASNIC--------MFPKSSWAWDGNPTTTALTIISEWGLECSSAF 115
           A P WH L     S + ++            + S  W  N T  + TIISEW L C    
Sbjct: 85  AAPQWHLLGKNGTSGSGDLADATESMDAALQECSDGWSYNSTVRSSTIISEWHLVCDMHS 144

Query: 116 IKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLL 175
            K +    +  G L+G +    L+D   GR+ LL +S L M+V+ +   FS++  ++ + 
Sbjct: 145 FKQMGQTIYMGGVLVGALLFGGLSDR-YGRRILLLISNLLMAVSGTCAAFSSSFSLFCVF 203

Query: 176 RFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTI 235
           RF  G++ + +G  T  L+ E + T  R  VG    + +T+G L L  +AY  R   W  
Sbjct: 204 RFGCGLALSGLGLNTFSLIVEWIPTRIRTAVGTTTGYCYTLGQLILVLLAYFIR--DWRW 261

Query: 236 IYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSL-VSA 294
           + L  S+P  V+  + + F  ES RWL +  R E A++ +KS++     ++ +  L +  
Sbjct: 262 LTLAVSLPFYVFFLIAWWF-HESSRWLALSNRTEHALKNLKSVARFNGRHEEAEKLDIKM 320

Query: 295 VSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFD 354
           +    +   S  + S+  SI +LF      +RTL L          YYG+ + ++  G D
Sbjct: 321 LHESMKKEMSCTQGSY--SILDLFNTPAMRKRTLCLSAVWLSTSFAYYGLAMDLDKFGVD 378

Query: 355 IYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDIS 414
           IYL  V    ++IP     + S  L         R+ S   + +++GI  ++ ++   + 
Sbjct: 379 IYLIQVIFGAVDIPAKVVVVVSMSLI-------GRRRSQCAVLVVAGITILLNLL---VP 428

Query: 415 NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLV 474
              + +R  L +        ++   ++Y+ ELFPT +R +    + +     A+ + +++
Sbjct: 429 YDKQTIRTCLAVLGKGCLAASFNCCYLYSGELFPTIIRQNGMGWVSMMARIGAMVAPMVL 488

Query: 475 AAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKDS 522
                  ++   ++G   I  G   I LPET G  L DTI   E   S
Sbjct: 489 LTRDYIPWLPGLIYGGAPILSGLAAIFLPETLGYPLPDTIQDVEESGS 536

Involved in the renal elimination of endogenous and exogenous organic anions. Functions as organic anion exchanger when the uptake of one molecule of organic anion is coupled with an efflux of one molecule of endogenous dicarboxylic acid (glutarate, ketoglutarate, etc). Mediates the sodium-independent uptake of p-aminohippurate (PAH), 2,3-dimercapto-1-propanesulfonic acid (DMPS), cidofovir, adefovir, 9-(2-phosphonylmethoxyethyl) guanine (PMEG), 9-(2-phosphonylmethoxyethyl) diaminopurine (PMEDAP), ochratoxin (OTA), acyclovir (ACV), 3'-azido-3-'deoxythymidine (AZT), cimetidine (CMD), 2,4-dichloro-phenoxyacetate (2,4-D), hippurate (HA), indoleacetate (IA), indoxyl sulfate (IS), 3-carboxy-4-methyl-5-propyl-2-furanpropionate (CMPF) and edaravone sulfate (By similarity). Mediates the sodium-independent uptake of p-aminohippurate (PAH). PAH uptake is inhibited by p-chloromercuribenzenesulphonate (PCMBS), diethyl pyrocarbonate (DEPC), indomethacin, sulindac, diclofenac, carprofen, okadaic acid, benzothiazolylcysteine (BTC), S-chlorotrifluoroethylcysteine (CTFC), cysteine S-conjugates S-dichlorovinylcysteine (DCVC), furosemide, steviol, phorbol 12-myristate 13-acetate (PMA), calcium ionophore A23187, benzylpenicillin, bumetamide, losartan, probenecid, phenol red, urate, glutarate and alpha-ketoglutarate (By similarity). PAH uptake is inhibited by glutarate.

Pseudopleuronectes americanus (taxid: 8265)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
224109096	502	predicted protein [Populus trichocarpa]	0.908	0.950	0.530	1e-143
225462303	526	PREDICTED: solute carrier family 22 memb	0.96	0.958	0.500	1e-143
357470161	529	Solute carrier family 22 member [Medicag	0.921	0.914	0.498	1e-143
224137726	506	predicted protein [Populus trichocarpa]	0.948	0.984	0.504	1e-143
225462305	520	PREDICTED: solute carrier family 22 memb	0.952	0.961	0.512	1e-140
359494670	527	PREDICTED: solute carrier family 22 memb	0.944	0.941	0.514	1e-139
297844562	518	hypothetical protein ARALYDRAFT_471835 [	0.935	0.947	0.490	1e-137
357470193	513	Solute carrier family 22 member [Medicag	0.92	0.941	0.497	1e-136
15219351	527	organic cation/carnitine transporter 2 [	0.961	0.958	0.474	1e-135
297842719	526	hypothetical protein ARALYDRAFT_895842 [	0.961	0.960	0.475	1e-135

>gi|224109096|ref|XP_002315082.1| predicted protein [Populus trichocarpa] gi|222864122|gb|EEF01253.1| predicted protein [Populus trichocarpa]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/509 (53%), Positives = 354/509 (69%), Gaps = 32/509 (6%)

Query: 24  DQRSHKQSISSLDEIVE------------QAILVSLASLFDSQQSFISVYTEAEPTWHCL 71
           D  +  +   SLDE +E            QAILVS A +FD+QQ+FISV+T+AEP WHC 
Sbjct: 13  DPSNESKQPPSLDETIERCIGEFGLAQLLQAILVSFAWVFDAQQTFISVFTDAEPKWHCT 72

Query: 72  NNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLG 131
           +++ C+S S+IC  P++SWAWD +P  T  +IISEWGLEC+S+ IKGLPA+S F GCL+G
Sbjct: 73  SDS-CTSVSDICHLPQNSWAWD-SPKDT--SIISEWGLECASSIIKGLPASSFFMGCLIG 128

Query: 132 IVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTI 191
            + LATLADS LGRKNLLFLSCL MS +   T+FSNN+WIYS L+F +G+ RATIGTC +
Sbjct: 129 GLMLATLADSLLGRKNLLFLSCLMMSFSGLFTVFSNNIWIYSALKFVNGVGRATIGTCAL 188

Query: 192 VLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLL 251
           VL TE VG  WR  VG++  F FT+G LTLPA AY NR SSW  +YLWTS+PT+ YS L+
Sbjct: 189 VLSTELVGKRWRSQVGVIGFFCFTLGFLTLPAFAYMNRGSSWRTLYLWTSVPTIFYSILV 248

Query: 252 YIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFL 311
           +  V ESPRWLF++GR+EEAV ++KS++    S  L +S  S + FG E    S      
Sbjct: 249 HFLVRESPRWLFVRGRKEEAVTILKSIATAGSSGIL-MSF-SNLEFGKE----SWNVDTY 302

Query: 312 SSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLA 371
           S+I+ L  ++WA  R L +M   FGIG+VYYGM LG+ NL F++YL V FNAL       
Sbjct: 303 SAIKILLKKKWACRRLLTVMAVVFGIGMVYYGMPLGLGNLSFNLYLSVTFNAL------- 355

Query: 372 STIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFS 431
           S +P+  +TFFL+ K NRK SLLV   +SG+CSI++VV  + S     +++GLEL S F 
Sbjct: 356 SELPASLVTFFLVDKLNRKDSLLVFTTLSGVCSILSVVMGETS---ANLQMGLELVSFFC 412

Query: 432 AYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLV 491
           A  A+ +  I+ +ELFPTCVRNSA S+ R +++F  +FS VLVA GS N F+SYG+FG+V
Sbjct: 413 ACTAFNISLIHTLELFPTCVRNSAISMARQSLVFGGMFSPVLVAVGSKNRFLSYGIFGMV 472

Query: 492 IICCGFFVICLPETRGSSLCDTIDQREHK 520
           I  CG FVI LPETRG ++CDT+D+ E+ 
Sbjct: 473 IGICGLFVIFLPETRGRTICDTMDEEEYN 501

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462303|ref|XP_002265206.1| PREDICTED: solute carrier family 22 member 21-like [Vitis vinifera]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/539 (50%), Positives = 361/539 (66%), Gaps = 35/539 (6%)

Query: 3   MADPSPLLCQSNSCTDDQE----SSDQRSHKQSISSLDEIVEQ------------AILVS 46
           MA+ +PLL QS             S+  S ++ + SLDE +EQ            AILVS
Sbjct: 1   MANATPLLSQSELSQPLSPSSSIESETPSVEKVLPSLDEFIEQSIGGFAWAQLLHAILVS 60

Query: 47  LASLFDSQQSFISVYTEAEPTWHC--LNNTTCSSASNICMFPKSSWAWDGNPTTTALTII 104
           LA LFD QQ+FIS++T+AEPTWHC  L+   C+S SNIC+ PK++W WD  P  T    I
Sbjct: 61  LAWLFDGQQTFISIFTDAEPTWHCNHLSTEDCNSGSNICLLPKTAWEWD-KPAYTFF--I 117

Query: 105 SEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTI 164
           SEW LEC ++ IKGLPA S F GCLLG   LA +ADSS GRKN+LFLSCLTMSVA  LT+
Sbjct: 118 SEWSLECVNSIIKGLPATSFFMGCLLGGFLLAPVADSSFGRKNMLFLSCLTMSVAALLTV 177

Query: 165 FSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI 224
           FS N+W+YS LRF SG  RA+IG   +VL TE VG  WRG VG +     T+G L+LPA+
Sbjct: 178 FSTNIWMYSALRFISGFGRASIGASALVLSTETVGNAWRGQVGTIGFLCCTLGFLSLPAM 237

Query: 225 AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDS 284
           AY NRSSSW ++Y+WTSIP + Y  L+   V ESPRWLFMQGR+EEA+  ++ L+P++++
Sbjct: 238 AYMNRSSSWRLLYVWTSIPAIFYCLLIRFLVCESPRWLFMQGRKEEALATLEKLAPMENN 297

Query: 285 NQL-SLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYG 343
             L SL L  +   G        + +   SI+ L  +RWA  R LA+MV  FGIG++YYG
Sbjct: 298 TSLKSLDLCLS---GALLKQEKMKMNLHLSIKMLLEKRWASRRLLAVMVIAFGIGIMYYG 354

Query: 344 MTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGIC 403
           M LG+ NL +++YL V  N L E       +PS  +T F I KW+R+SS+L L  ISG+ 
Sbjct: 355 MPLGVGNLAYNLYLSVTLNVLAE-------MPSSLITMFYIGKWSRRSSVLALTTISGVS 407

Query: 404 SIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAI 463
           SIM VV   + +  K +++GLEL S F A   ++V+ IY +ELFPTCVR+ A +++R A+
Sbjct: 408 SIMCVV---VGHGMKELQVGLELISFFCACTVFSVLMIYTLELFPTCVRSLAVAMVRQAL 464

Query: 464 IFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKDS 522
           + +   S++L+AAG  N F+SYGVFGL+I+CCG FV+CLPET+G SLCDT++++EHK++
Sbjct: 465 MSSGTVSTILIAAGKTNAFLSYGVFGLLILCCGLFVVCLPETKGLSLCDTMEEQEHKEA 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470161|ref|XP_003605365.1| Solute carrier family 22 member [Medicago truncatula] gi|355506420|gb|AES87562.1| Solute carrier family 22 member [Medicago truncatula]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/518 (49%), Positives = 355/518 (68%), Gaps = 34/518 (6%)

Query: 22  SSDQRSHKQSISSLDEIVE------------QAILVSLASLFDSQQSFISVYTEAEPTWH 69
           +S+    ++ I S DE++E            Q ILVS A  FD+QQSFI++YT+   TWH
Sbjct: 32  NSNSIEQEKVIPSTDEMMERGLGRFGWVEFVQCILVSFAMFFDAQQSFITIYTDEYQTWH 91

Query: 70  CLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCL 129
           C N TTC+  SNIC  P+SSW+WDG    T   +IS+W LEC+S+F+ GLP +S F GCL
Sbjct: 92  CTNPTTCAWDSNICKIPRSSWSWDGPAHKT---VISQWSLECASSFVTGLPQSSFFIGCL 148

Query: 130 LGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTC 189
            G   LATLAD+SLGRKN+L +SCL+MS+A+ L +FS N+WIYS+ +F  G  R++IGTC
Sbjct: 149 FGSFLLATLADTSLGRKNMLVMSCLSMSIASILIVFSTNVWIYSVFKFLIGFLRSSIGTC 208

Query: 190 TIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSG 249
            +VLLTEKV TEWR  VGI++ F FT+G ++LP IAY NR +SW  +Y+WTS+P ++YS 
Sbjct: 209 VLVLLTEKVSTEWRFTVGIVEYFCFTLGYVSLPGIAYLNRYNSWKSVYIWTSVPAIIYSV 268

Query: 250 LLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESS 309
           + YIFV+ESPRWL MQGR +EA+ ++K +S +++S+ + +SL+ A      P    K S 
Sbjct: 269 IAYIFVTESPRWLLMQGRHQEAMAMLKGVSSVENSDDMIVSLIEA------PVNKQKASI 322

Query: 310 F--LSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEI 367
           F   SSI ELF R WAL+R +A+MV G GIG+VY+GM L + NLGFDIYL VVFN L+EI
Sbjct: 323 FQLYSSIAELFARSWALKRMMAVMVLGIGIGMVYFGMPLAVGNLGFDIYLAVVFNGLMEI 382

Query: 368 PNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELA 427
           P+  +T        + ++   RK S+LV  + SGIC IM V+   + +  + +++GL + 
Sbjct: 383 PSCVAT--------YFLENRQRKPSILVFSVASGICCIMCVI---VGSGQQGIKVGLAMT 431

Query: 428 SLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGV 487
           S FSA  AY V  IY IE+FPT VRN+ TS++R AI+F  IFS  L++AG  N+  SYGV
Sbjct: 432 SFFSACTAYNVFLIYIIEVFPTSVRNTTTSLVRQAIVFGNIFSPFLISAGRKNDIFSYGV 491

Query: 488 FGLVIICCGFFVICLPETRGSSLCDTIDQREHKDSVTV 525
           FG+VI+     ++ LPE+RG +L DT+DQ+E KD ++V
Sbjct: 492 FGVVIMLSCVTLLGLPESRGLALSDTMDQQEKKDDMSV 529

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137726|ref|XP_002322629.1| predicted protein [Populus trichocarpa] gi|222867259|gb|EEF04390.1| predicted protein [Populus trichocarpa]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 268/531 (50%), Positives = 363/531 (68%), Gaps = 33/531 (6%)

Query: 3   MADPSPLLCQ------SNSCTDDQESSDQRSHKQSISSLD--EIVEQAILVSLASLFDSQ 54
           MAD SPLL         NS  D+ ++S     ++ I      ++V Q+ LV L+  FD+Q
Sbjct: 1   MADSSPLLPPFLLAEPENSAVDEPQASLDSVVERVIGDFGWTQLV-QSTLVLLSRFFDAQ 59

Query: 55  QSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSA 114
           Q+FISVY ++EP WHC+NN  C+S++NIC   KSSWAW+G+   T  TIIS+W LEC+S+
Sbjct: 60  QTFISVYADSEPAWHCINNGMCNSSANICDLSKSSWAWNGH---TYKTIISDWDLECASS 116

Query: 115 FIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSL 174
           FIKGLPA+S F GCLLG   L TLAD+SLGRKNLL LSCL MS+A+ +TIFS N+WIYS 
Sbjct: 117 FIKGLPASSFFLGCLLGGFVLGTLADTSLGRKNLLTLSCLIMSIASLMTIFSTNVWIYSA 176

Query: 175 LRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWT 234
            RF SG  RA IG   +VL TEKVG++WRG +G +    F +G L+LP IAY NR+ SW 
Sbjct: 177 FRFLSGFGRAAIGATALVLATEKVGSKWRGQMGTIAGVSFALGLLSLPGIAYINRNFSWR 236

Query: 235 IIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSA 294
            IY+WTS P+++Y  L+++ V ESPRWLF+QGR+E A+ ++K L P      L+L L   
Sbjct: 237 TIYVWTSTPSILYCVLVHLLVLESPRWLFLQGRKEAAMAILKRLGP----TSLNLCL-PY 291

Query: 295 VSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFD 354
           +S   E    + +++  S I+ L VR+WAL+R L +M+ GFGIG+VYY M L + NLGF+
Sbjct: 292 ISLEKE----APKTNLYSPIKILLVRKWALQRLLIVMLTGFGIGIVYYSMPLAVGNLGFN 347

Query: 355 IYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDIS 414
           IYL V FNAL E       IPS+ +  F++ KW+RK SLL    + GICSIM ++     
Sbjct: 348 IYLSVAFNALAE-------IPSYIIFSFIVSKWSRKGSLLAFTTLGGICSIMCIM----- 395

Query: 415 NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLV 474
           N  + + IGLEL S FSA  A+ ++ IY +ELFPTCVRN A+S++R A +F A+FS +L+
Sbjct: 396 NWKEVVLIGLELVSYFSACTAFIMLMIYTLELFPTCVRNGASSMVRQAPVFGAVFSPILI 455

Query: 475 AAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKDSVTV 525
           +AG +N+ +SYGVFGLVI+C   FV CLPETRG +L DT+D++E K+ + +
Sbjct: 456 SAGRSNKVLSYGVFGLVILCSSVFVFCLPETRGVALSDTMDEQEEKEQLAM 506

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462305|ref|XP_002266025.1| PREDICTED: solute carrier family 22 member 3-like [Vitis vinifera]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/537 (51%), Positives = 352/537 (65%), Gaps = 37/537 (6%)

Query: 3   MADPSPLLCQSNSCTDDQESSDQRSHKQSISSLDEIVE------------QAILVSLASL 50
           MADP+PLL QS+    D E      H   + SLDE  E            QA LVS A +
Sbjct: 1   MADPTPLLSQSH--LADPEPMLIPKH---LPSLDETFERYIGDFGWAQLLQAFLVSFAWV 55

Query: 51  FDSQQSFISVYTEAEPTWHC--LNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWG 108
           FD+QQ+FIS++T+AEP WHC  L    C+S SNIC  PK SWAWD    T+   I+SEW 
Sbjct: 56  FDAQQTFISLFTDAEPPWHCTELGTELCTSVSNICQLPKGSWAWDRAADTS---IVSEWT 112

Query: 109 LECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNN 168
           L C+ + IK LPA+S F GC++G + LATLADSSLGRKN+LF SCL MS    LTIFS N
Sbjct: 113 LVCAGSIIKSLPASSFFMGCMVGGLVLATLADSSLGRKNMLFFSCLLMSATGILTIFSPN 172

Query: 169 LWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN 228
           +WIYS  RF SG  RATIGTC IVL TE VG  WR  VG+   F FT+G L+LPAIAY +
Sbjct: 173 VWIYSGFRFLSGFGRATIGTCAIVLSTELVGKRWRSQVGVCGFFLFTLGFLSLPAIAYLS 232

Query: 229 RSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLS 288
           R SSW  +YLWTS+P L Y  L++ FV ESPRWL ++GR+EEAV  +KS+  + +S+  +
Sbjct: 233 RGSSWRYLYLWTSVPALSYCVLVHFFVRESPRWLLVRGRKEEAVATLKSIGAVNNSS-FT 291

Query: 289 LSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGI 348
           LS  S + F  E   +    S +S + E   +RWAL R  A+M  GFG+G+VYYGM L +
Sbjct: 292 LSF-SGLPFEDEETTNLHLCSVISILLE---KRWALRRLSAVMTVGFGVGMVYYGMPLAL 347

Query: 349 ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAV 408
            NL F++Y  V FNAL E+P  AS I      FF I++ NRKSS+LV  + SG+CSIM V
Sbjct: 348 GNLPFNLYWNVTFNALSELP--ASLI-----AFFFIERLNRKSSVLVFTMTSGVCSIMCV 400

Query: 409 VANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAI 468
           V  +       ++IGLEL S FS   A+ ++ IY IELFPTCVRNSA +++R A++F  +
Sbjct: 401 VMGE---EWASLKIGLELVSFFSTCTAFDILLIYTIELFPTCVRNSAMAMVRQALVFGGV 457

Query: 469 FSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKDSVTV 525
           F  V+V  G  N ++SYGVFG+VII CG FV CLPET+G +LCDT+++ E+K+   V
Sbjct: 458 FCPVIVEIGMGNGYLSYGVFGVVIISCGLFVGCLPETKGGTLCDTMEEEENKERAAV 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494670|ref|XP_002265245.2| PREDICTED: solute carrier family 22 member 3-like [Vitis vinifera]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 274/533 (51%), Positives = 350/533 (65%), Gaps = 37/533 (6%)

Query: 3   MADPSPLLCQSNSCTDDQESSDQRSHKQSISSLDEIVE------------QAILVSLASL 50
           MAD +PLL QS+    D E      H   + SLDE  E            QA LVS A +
Sbjct: 1   MADSTPLLSQSHPA--DPEPLLIPKH---LPSLDETFERYIGDFGWAQLLQAFLVSFAWV 55

Query: 51  FDSQQSFISVYTEAEPTWHC--LNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWG 108
           FD+QQ+FISV+T+AEP WHC  L    C+S SNIC  PK SWAWD    T+   I+SEW 
Sbjct: 56  FDAQQTFISVFTDAEPPWHCTELGTELCTSVSNICQLPKGSWAWDRAADTS---IVSEWT 112

Query: 109 LECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNN 168
           L C+ + IK LPA+S FTGC++G + LATLADSS GRKN+LF SCL MS    LTIFS N
Sbjct: 113 LVCAGSIIKSLPASSFFTGCMVGGLVLATLADSSFGRKNMLFFSCLLMSATGILTIFSPN 172

Query: 169 LWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN 228
           +WIYS  RF SG  RATIGTC IVL TE VG  WR  VG+   F FT+G L+LPAIAY +
Sbjct: 173 VWIYSGFRFLSGFGRATIGTCAIVLSTELVGKRWRSQVGVCGFFLFTLGFLSLPAIAYLS 232

Query: 229 RSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLS 288
           RSSSW  +YLWTS+P  +Y  L++ FV ESPRWL ++GR+EEAV  +KS+  + +S+  +
Sbjct: 233 RSSSWRYLYLWTSVPASLYCVLVHFFVRESPRWLLVRGRKEEAVATLKSIGAVNNSS-FT 291

Query: 289 LSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGI 348
           LS  S + F  E   +    S +S + E   +RWAL R  A+M  GFG+G+VYYGM L +
Sbjct: 292 LSF-SGLPFEEEETTNLHLYSVISILLE---KRWALRRLSAVMTVGFGVGMVYYGMPLAL 347

Query: 349 ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAV 408
            NL F++Y  V FNAL E+P  AS I      FF I++ NRKSS+LV  + SG+CSIM V
Sbjct: 348 GNLPFNLYWNVTFNALSELP--ASLI-----AFFFIERLNRKSSVLVFTMTSGVCSIMCV 400

Query: 409 VANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAI 468
           V  +       ++IGLEL S FS   A+ ++ IY IELFPTCVRNSA +++R A++F  +
Sbjct: 401 VMGE---EWASLKIGLELVSFFSTCTAFDILLIYTIELFPTCVRNSAMAMVRQALVFGGV 457

Query: 469 FSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKD 521
           F  V+V  G  N ++SYGVFG+VII CG FV CLPET+G +LCDT+++ E+K 
Sbjct: 458 FCPVIVEIGRGNGYLSYGVFGVVIISCGLFVGCLPETKGGTLCDTMEEEENKQ 510

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844562|ref|XP_002890162.1| hypothetical protein ARALYDRAFT_471835 [Arabidopsis lyrata subsp. lyrata] gi|297336004|gb|EFH66421.1| hypothetical protein ARALYDRAFT_471835 [Arabidopsis lyrata subsp. lyrata]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/536 (49%), Positives = 358/536 (66%), Gaps = 45/536 (8%)

Query: 3   MADPS-PLLCQSNSCTDDQESSDQRSHKQSISSLDEIVEQAI------------LVSLAS 49
           MAD + PLL  SNS           S+     SLDE +EQ I            LVS A 
Sbjct: 1   MADSTRPLLSDSNS---------SESNLPPPKSLDETIEQCIGNFGWAQFLQAALVSFAW 51

Query: 50  LFDSQQSFISVYTEAEPTWHC----LNNTTC-SSASNICMFPKSSWAWDGNPTTTALTII 104
           +FD+QQ+FI+V+T+++PTWHC    L ++ C +S+SN+C  P  +W+WD NP    ++II
Sbjct: 52  VFDAQQTFITVFTDSQPTWHCTDSDLVDSVCNTSSSNLCTLPNQTWSWDFNP---HVSII 108

Query: 105 SEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTI 164
           SEWGL+C+ +F+KGLPA+S F GCL+G + L+TLADSSLGRKN+L LSCL MS+++ LT 
Sbjct: 109 SEWGLQCAGSFLKGLPASSFFLGCLIGGLVLSTLADSSLGRKNMLLLSCLIMSLSSMLTA 168

Query: 165 FSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI 224
           FS ++W+Y+ LRF +G  RATIGTC +VL TE VG +WRG VG +  F FT+G L+LP +
Sbjct: 169 FSTSIWVYAFLRFLNGCGRATIGTCALVLSTELVGKKWRGKVGAMGFFCFTLGFLSLPML 228

Query: 225 AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDS 284
            Y N  +SW  +Y+WTSIPTL+Y  L+ IFV ESPRWL ++GR+EEAV +++S++    S
Sbjct: 229 GYINNGNSWRYLYVWTSIPTLIYCCLIRIFVRESPRWLIVKGRKEEAVSILQSIA----S 284

Query: 285 NQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGM 344
           N +++S  + + F  E   S+       +++ L  + W+  R LA MV GFGIG+VYYGM
Sbjct: 285 NAITMSFTN-LCFDIEEDQSNSNPDVYDALKILVRKSWSFRRLLAAMVVGFGIGMVYYGM 343

Query: 345 TLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICS 404
            L + NL F++YLGVVFNAL       S  P+F +TFF I K NR+ +L+    +SGI S
Sbjct: 344 PLALTNLNFNLYLGVVFNAL-------SEFPAFLITFFFIDKINRRDALIGFTALSGISS 396

Query: 405 IMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAII 464
            +  V      A   ++I LEL S FSA  A+ +  IY IE+FPTCVRNSA +++R A++
Sbjct: 397 ALIAVLGQQLGA---LQIVLELVSFFSACTAFNMTLIYTIEMFPTCVRNSAIAMVRQALV 453

Query: 465 FAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHK 520
           F  +FS V+VAAG  N+F SYG+FGLVI  CG FV  LPETRGS LCDT+D+ E+K
Sbjct: 454 FGGVFSPVMVAAGRENQFWSYGLFGLVIALCGLFVFGLPETRGSVLCDTMDEEEYK 509

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470193|ref|XP_003605381.1| Solute carrier family 22 member [Medicago truncatula] gi|217074868|gb|ACJ85794.1| unknown [Medicago truncatula] gi|355506436|gb|AES87578.1| Solute carrier family 22 member [Medicago truncatula]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/517 (49%), Positives = 350/517 (67%), Gaps = 34/517 (6%)

Query: 18  DDQESSDQRSHKQSISSLDEIVE------------QAILVSLASLFDSQQSFISVYTEAE 65
           DD +++D    K S SS DE++E            Q ILVS A  FD+QQSFI++YT+  
Sbjct: 16  DDNKANDD--EKVSPSS-DEMIERSLGTFGWVEFVQCILVSFAMFFDAQQSFITIYTDDY 72

Query: 66  PTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAASHF 125
           PTWHC ++TTC+S SNIC  PKSSW+WDG       TIIS+W LEC+S+FI GLP +S F
Sbjct: 73  PTWHCTDSTTCNSNSNICKIPKSSWSWDG---PVQKTIISQWSLECASSFITGLPQSSFF 129

Query: 126 TGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRAT 185
            GCL+G   LATLAD+SLGRKN+L +SCL+MS+ + + +FS N+WIYS  +F  G  R++
Sbjct: 130 IGCLIGSFALATLADTSLGRKNMLIISCLSMSITSIIIVFSTNVWIYSAFKFLIGFWRSS 189

Query: 186 IGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTL 245
           IGTC +VLLTEKV TEWR  VGI++ F FT+G ++LP +AY  R SSW  +Y+WTSIP +
Sbjct: 190 IGTCVLVLLTEKVSTEWRFTVGIVEYFCFTLGYMSLPGVAYVFRFSSWKSVYIWTSIPAI 249

Query: 246 VYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASS 305
           +Y+ + Y FV+ESPRWL MQGR +EA+ ++K +S  ++++     L +++     P   +
Sbjct: 250 IYTIIGYFFVTESPRWLLMQGRNKEAIAMLKGMSSEENAD-----LTASLLLNAPPKQKT 304

Query: 306 KESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALL 365
                 SSI +LF R WAL+R +A+MV G GIG+VY+GM L + NLGFDIYL VVFNAL+
Sbjct: 305 SVFQLYSSITKLFERSWALKRMVAIMVLGMGIGMVYFGMPLAVGNLGFDIYLAVVFNALM 364

Query: 366 EIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLE 425
           EIP+  +T        + ++   RK S+L   I SG+C +M VV     +  + +++GL 
Sbjct: 365 EIPSCVAT--------YFLENRQRKPSILAFSIASGVCCVMCVVVG---SGVQGIKVGLA 413

Query: 426 LASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSY 485
           L S FSA  AY V  IY IELFPT VRN+ TS++R AI+F  IFS  L++AG  N+  SY
Sbjct: 414 LTSFFSATTAYNVFLIYIIELFPTSVRNTTTSLVRQAIVFGNIFSPFLISAGRKNDVFSY 473

Query: 486 GVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKDS 522
           GVFG+VI+     ++ LPET+G +LCDT+DQ+E KD 
Sbjct: 474 GVFGVVIMLSCVTLLALPETKGQALCDTMDQQEKKDK 510

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219351|ref|NP_178054.1| organic cation/carnitine transporter 2 [Arabidopsis thaliana] gi|75219810|sp|O64515.1|OCT2_ARATH RecName: Full=Organic cation/carnitine transporter 2; Short=AtOCT2 gi|3152576|gb|AAC17057.1| Similar to liver-specific transport protein gb|L27651 from Rattus norviegicus [Arabidopsis thaliana] gi|332198113|gb|AEE36234.1| organic cation/carnitine transporter 2 [Arabidopsis thaliana]

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 251/529 (47%), Positives = 361/529 (68%), Gaps = 24/529 (4%)

Query: 3   MADPS-PLLCQSNSCTDDQESSDQRSHKQSISSLDEIVEQAILVSLASLFDSQQSFISVY 61
           MA+P+ PLL  SNS +         S+  S      +  QA LVS + +FD+QQ+FISV+
Sbjct: 1   MAEPTQPLLTDSNSSSPRSLDDTIESYIGSFGWAQFL--QAALVSFSGVFDAQQTFISVF 58

Query: 62  TEAEPTWHCLN-NTTC-SSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGL 119
           T++EPTWHC + N+ C  S SNIC+ PK++W+WD +P    +++ISEWGL+C+ +F+KGL
Sbjct: 59  TDSEPTWHCTDSNSICHESISNICILPKTAWSWDYSPH---VSVISEWGLQCAGSFVKGL 115

Query: 120 PAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS 179
           P +S F GCL+G + L+TLADSSLGRKN+LFLSCL M+++T LT+FS N+W+Y++LRF +
Sbjct: 116 PESSFFVGCLIGGLVLSTLADSSLGRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFVN 175

Query: 180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLW 239
           G  RATIGTC +VL TE VG +WRG VGI+  F F +G L+LP +AY NR SSW I+Y W
Sbjct: 176 GFGRATIGTCALVLSTELVGKKWRGRVGIMSFFGFMLGFLSLPLMAYMNRGSSWRILYAW 235

Query: 240 TSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSN-----QLSLSLVSA 294
           TSIPT++Y  L+  FV ESPRWLF++GR+EEA+ ++K ++ I  ++      +S+S  S+
Sbjct: 236 TSIPTIIYCVLVRFFVCESPRWLFVRGRREEAISILKRVASIPSTDVSSGGAISMSF-SS 294

Query: 295 VSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFD 354
           + F  +    S   +  ++++ L  +RWAL+R  A+M   FGIG+VYYGM L + NL F+
Sbjct: 295 LPFEEDEEKPSTNVNIFTTMKVLVEKRWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFN 354

Query: 355 IYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVAND-- 412
           IYL   FNAL++       +P+  +T FL+ K +R+++L+    + G+ S++    ++  
Sbjct: 355 IYLSAAFNALMD-------LPANLITLFLVDKLSRRNALIGFTALGGVSSVLIFALHNMR 407

Query: 413 ISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSV 472
           I N G  +++ LEL S FSA  A+ +  IY IELFPTCVRNSA ++ R A++   +FS +
Sbjct: 408 IGNHGA-LQLALELISYFSACSAFNMEMIYTIELFPTCVRNSAIAMARQALVLGGVFSPI 466

Query: 473 LVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKD 521
           +VAAG  N F S+G+FGL I   G F + LPETRGS LCDT+D+ E KD
Sbjct: 467 MVAAGRKNAFWSFGLFGLAIGLLGLFAVGLPETRGSDLCDTMDEEECKD 515

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842719|ref|XP_002889241.1| hypothetical protein ARALYDRAFT_895842 [Arabidopsis lyrata subsp. lyrata] gi|297335082|gb|EFH65500.1| hypothetical protein ARALYDRAFT_895842 [Arabidopsis lyrata subsp. lyrata]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 251/528 (47%), Positives = 361/528 (68%), Gaps = 23/528 (4%)

Query: 3   MADPS-PLLCQSNSCTDDQESSDQRSHKQSISSLDEIVEQAILVSLASLFDSQQSFISVY 61
           MA+P+ PLL  SNS +         S+  S      +  QA LVS + +FD+QQ+FISV+
Sbjct: 1   MAEPTQPLLTDSNSSSPRSFDDTIESYIGSFGWAQFL--QAALVSFSGVFDAQQTFISVF 58

Query: 62  TEAEPTWHCLN-NTTC-SSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGL 119
           T++EPTWHC + ++ C  S SNIC+ PK++W+WD +P    +++ISEWGL+C+ +F+KGL
Sbjct: 59  TDSEPTWHCTDSDSICHESISNICILPKTAWSWDYSPH---VSVISEWGLQCAGSFVKGL 115

Query: 120 PAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS 179
           P +S F GCL+G + L+TLADSSLGRKN+LFLSCL M+++T LT+FS N+W+Y++LRF +
Sbjct: 116 PESSFFVGCLIGGLVLSTLADSSLGRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFVN 175

Query: 180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLW 239
           G  RATIGTC +VL TE VG +WRG VGI+  F F +G L+LP +AY NR SSW I+Y+W
Sbjct: 176 GFGRATIGTCALVLSTELVGKKWRGRVGIMSFFGFMLGFLSLPLMAYINRGSSWRILYVW 235

Query: 240 TSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGH 299
           TSIPT++Y  L+  FV ESPRWLF++GR+EEA+ ++K ++ I  S  +++    ++SF  
Sbjct: 236 TSIPTIIYCVLVRFFVCESPRWLFVRGRKEEAISILKRVASIP-STDVNIGGAISMSFSS 294

Query: 300 EPAASSKES----SFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDI 355
            P    +E     +  ++++ L  +RWAL+R  A+M   FGIG+VYYGM L + NL F+I
Sbjct: 295 LPFEDEEEKPNNVNIFTTMKVLVEKRWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFNI 354

Query: 356 YLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIM--AVVANDI 413
           YL   FNAL++       +P+  +T FL+ K +R+++L+    + G+ S++  A+    I
Sbjct: 355 YLSAAFNALMD-------LPANLITLFLVDKLSRRNALIGFTALGGVSSVLIFALQNMRI 407

Query: 414 SNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVL 473
            N G  +++ LEL S FSA  A+ +  IY IELFPTCVRNSA ++ R A++   +FS ++
Sbjct: 408 GNHGA-LQLALELISYFSACSAFNMEMIYTIELFPTCVRNSAIAMARQALVLGGVFSPIM 466

Query: 474 VAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKD 521
           VAAG  N F S+G+FGL I   G F + LPETRGS LCDT+D+ E KD
Sbjct: 467 VAAGRKNAFWSFGLFGLAIALLGLFAVGLPETRGSDLCDTMDEEECKD 514

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
TAIR|locus:2207360	527	OCT2 "AT1G79360" [Arabidopsis	0.963	0.960	0.477	1.7e-128
TAIR|locus:2032825	518	OCT3 "AT1G16390" [Arabidopsis	0.946	0.959	0.481	6.1e-126
TAIR|locus:2032790	521	OCT6 "AT1G16370" [Arabidopsis	0.944	0.952	0.383	6.4e-99
TAIR|locus:2206430	515	OCT5 "AT1G79410" [Arabidopsis	0.948	0.966	0.381	1.4e-96
TAIR|locus:2197244	539	OCT1 "AT1G73220" [Arabidopsis	0.956	0.931	0.352	7.1e-77
TAIR|locus:2083425	526	OCT4 "organic cation/carnitine	0.859	0.857	0.301	1.6e-56
UNIPROTKB|E2RLI9	521	SLC22A11 "Uncharacterized prot	0.826	0.833	0.290	3.7e-39
UNIPROTKB|E2QSD7	556	SLC22A20 "Uncharacterized prot	0.820	0.775	0.261	9.7e-39
UNIPROTKB|F1MII8	540	SLC22A8 "Uncharacterized prote	0.817	0.794	0.254	1.7e-38
UNIPROTKB|Q70BM6	543	SLC22A8 "Solute carrier family	0.761	0.736	0.264	2.8e-38

TAIR|locus:2207360 OCT2 "AT1G79360" [Arabidopsis thaliana (taxid:3702)]

 Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
 Identities = 252/528 (47%), Positives = 358/528 (67%)

Query:     3 MADPS-PLLCQSNSCTDDQESSDQRSHKQSISSLDEIVEQAILVSLASLFDSQQSFISVY 61
             MA+P+ PLL  SNS +         S+  S      +  QA LVS + +FD+QQ+FISV+
Sbjct:     1 MAEPTQPLLTDSNSSSPRSLDDTIESYIGSFGWAQFL--QAALVSFSGVFDAQQTFISVF 58

Query:    62 TEAEPTWHCLN-NTTC-SSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGL 119
             T++EPTWHC + N+ C  S SNIC+ PK++W+WD +P    +++ISEWGL+C+ +F+KGL
Sbjct:    59 TDSEPTWHCTDSNSICHESISNICILPKTAWSWDYSPH---VSVISEWGLQCAGSFVKGL 115

Query:   120 PAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS 179
             P +S F GCL+G + L+TLADSSLGRKN+LFLSCL M+++T LT+FS N+W+Y++LRF +
Sbjct:   116 PESSFFVGCLIGGLVLSTLADSSLGRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFVN 175

Query:   180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLW 239
             G  RATIGTC +VL TE VG +WRG VGI+  F F +G L+LP +AY NR SSW I+Y W
Sbjct:   176 GFGRATIGTCALVLSTELVGKKWRGRVGIMSFFGFMLGFLSLPLMAYMNRGSSWRILYAW 235

Query:   240 TSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLS---LSL-VSAV 295
             TSIPT++Y  L+  FV ESPRWLF++GR+EEA+ ++K ++ I  ++  S   +S+  S++
Sbjct:   236 TSIPTIIYCVLVRFFVCESPRWLFVRGRREEAISILKRVASIPSTDVSSGGAISMSFSSL 295

Query:   296 SFGHEPAAXXXXXXXXXXIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDI 355
              F  +             ++ L  +RWAL+R  A+M   FGIG+VYYGM L + NL F+I
Sbjct:   296 PFEEDEEKPSTNVNIFTTMKVLVEKRWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFNI 355

Query:   356 YLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVAND--I 413
             YL   FNAL+++P  A+ I     T FL+ K +R+++L+    + G+ S++    ++  I
Sbjct:   356 YLSAAFNALMDLP--ANLI-----TLFLVDKLSRRNALIGFTALGGVSSVLIFALHNMRI 408

Query:   414 SNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVL 473
              N G  +++ LEL S FSA  A+ +  IY IELFPTCVRNSA ++ R A++   +FS ++
Sbjct:   409 GNHGA-LQLALELISYFSACSAFNMEMIYTIELFPTCVRNSAIAMARQALVLGGVFSPIM 467

Query:   474 VAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKD 521
             VAAG  N F S+G+FGL I   G F + LPETRGS LCDT+D+ E KD
Sbjct:   468 VAAGRKNAFWSFGLFGLAIGLLGLFAVGLPETRGSDLCDTMDEEECKD 515

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2032825 OCT3 "AT1G16390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1237 (440.5 bits), Expect = 6.1e-126, P = 6.1e-126
 Identities = 255/530 (48%), Positives = 355/530 (66%)

Query:     3 MADPS-PLLCQSNSCTDDQESSDQRSHKQSISS-LDEI----VEQAILVSLASLFDSQQS 56
             MAD + PLL   NS   +      RS +++I   + +       QA LVS A  FD+QQ+
Sbjct:     1 MADSTRPLLSDFNS--SESNLPPPRSLEETIERCIGDFGWAQFLQAALVSFAWFFDAQQT 58

Query:    57 FISVYTEAEPTWHCLNN----TTCS-SASNICMFPKSSWAWDGNPTTTALTIISEWGLEC 111
             FI+V+T+++P WHC N+    + C+ S+SN+C  P  +W+WD NP    ++IISEWGL+C
Sbjct:    59 FITVFTDSQPMWHCDNSDRVDSVCNTSSSNLCTLPNQTWSWDLNPH---VSIISEWGLQC 115

Query:   112 SSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWI 171
             + +F+KG PA+S F GCL+G + L+TLADSSLGRKN+L LSCL MS+++ LT FS ++W+
Sbjct:   116 AGSFLKGFPASSFFLGCLIGGLALSTLADSSLGRKNMLLLSCLIMSLSSMLTAFSTSIWV 175

Query:   172 YSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSS 231
             Y+ LRF +G  RATIGTC +VL TE VG +WRG VG +  F FT+G L+LP + Y N  +
Sbjct:   176 YAFLRFLNGCGRATIGTCALVLSTELVGKKWRGQVGAMGFFCFTLGFLSLPMLGYINEGN 235

Query:   232 SWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSL 291
             SW  +Y+WTSIPTL+Y  L+  FV ESPRWL ++GR+EEAV +++S++    SN +++S 
Sbjct:   236 SWRNLYVWTSIPTLIYCCLVRSFVRESPRWLIVKGRKEEAVSILQSIA----SNAITMSF 291

Query:   292 VSAVSFGHEPAAXXXXXXXXXXIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENL 351
              + + F  E             ++ L  + W+  R LA MV GFGIG+VYYGM L + NL
Sbjct:   292 TN-LCFEVENDQSKSNPDVYDALKILVRKSWSFRRLLAAMVVGFGIGMVYYGMPLALTNL 350

Query:   352 GFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICS-IMAVVA 410
              F++YLGVVFNAL E P       +F +TFF I K NR+ +L+    +SGI S ++AV+ 
Sbjct:   351 NFNLYLGVVFNALSEFP-------AFLITFFFIDKINRRDALIGFTALSGISSALIAVLG 403

Query:   411 NDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFS 470
               + +    ++I LEL S FSA  A+ +  IY IE+FPTCVRNSA S++R A++F  +FS
Sbjct:   404 QQLGS----LQIVLELVSFFSACTAFNMTLIYTIEMFPTCVRNSAISMVRQALVFGGVFS 459

Query:   471 SVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHK 520
              V+VAAG  N+F SYG+FGL+I  CG FV  LPETRGS LCDT+D+ E+K
Sbjct:   460 PVMVAAGRENQFWSYGLFGLIIGLCGLFVFGLPETRGSVLCDTMDEEEYK 509

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0070417 "cellular response to cold" evidence=IEP

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2032790 OCT6 "AT1G16370" [Arabidopsis thaliana (taxid:3702)]

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 205/535 (38%), Positives = 326/535 (60%)

Query:     3 MADP--SPLLCQSNSCTDDQESSDQRSHKQSISSLDEIVEQAI------------LVSLA 48
             MADP   PLL   +  TDD    ++++  ++++  D+IVEQ++            LV LA
Sbjct:     1 MADPISEPLL---SHLTDDS-GVNEKTRLEALT-FDKIVEQSLSDFGFWQFFQISLVGLA 55

Query:    49 SLFDSQQSFISVYTEAEPTWHCLNNTTCS-SASNICMFPKSSWAWDGNPTTTALTIISEW 107
              LFD+QQ FI+VYT+A PTWHCLN+T C  SAS+IC  P+S+W WDG   +   ++ISE+
Sbjct:    56 LLFDAQQIFITVYTDAYPTWHCLNHTICDPSASDICKLPRSAWEWDGG--SQGKSVISEF 113

Query:   108 GLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN 167
             GLECSS+ ++G+P+++ + G ++G  FLA + D SLGRK L+  S   MS+ +   IFS 
Sbjct:   114 GLECSSSLLRGMPSSAFYIGAIVGGFFLALIPDDSLGRKKLVLFSTFAMSITSISVIFST 173

Query:   168 NLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYT 227
             N+WIY+ L+F  G SR+   +  +VL++E+V T WR    ++    F +G ++L  IA+ 
Sbjct:   174 NVWIYTFLKFIIGFSRSQTWSYALVLISERVSTRWRPRATMIPFTLFVLGFMSLSGIAFL 233

Query:   228 NRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQL 287
              + SSW  +YL+TS+P + Y   LY+F  ESPRWL MQG+ +EA++V+  +SP K+   L
Sbjct:   234 AQDSSWRYLYLYTSVPAVFYCIFLYLFALESPRWLHMQGKDKEAIDVLTKMSP-KEKAYL 292

Query:   288 SLSLVSAVSFGHEPAAXXXXXXXXXXIRELFVRRWALERTLALMVPGFGIGVVYYGMTLG 347
               S+VS +    E             I++ F R+WA  R L +M+  FG+G+ YYG+ L 
Sbjct:   293 E-SVVSKLPLKQE----NFEQAPTYSIKDFFFRKWAFRRILVVMIIMFGLGISYYGVPLA 347

Query:   348 IENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMA 407
               ++  +IYL    NAL+E+P       +F +T  L++++NR+SS+LV  ++ G   ++ 
Sbjct:   348 ARDIDVNIYLSETLNALVELP-------TFVITPILLERFNRRSSVLVNTLLGGASGVLC 400

Query:   408 VVANDISNAGK-RMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFA 466
              V   +S  GK  +    EL + F A I + ++ ++ +E+FPTCVR+SAT + R A++  
Sbjct:   401 FV---LSILGKTEIAFAFELGTFFCARIGFNLMAVFMVEMFPTCVRSSATMMFRQALVVG 457

Query:   467 AIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKD 521
                  ++ + G     VS+ +FG+ +   G FV+ LPET+G SLCD+++++E +D
Sbjct:   458 GACCPLIASIGRYIPSVSFAIFGIAMSGLGMFVLILPETKGLSLCDSMEEQEKRD 512

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2206430 OCT5 "AT1G79410" [Arabidopsis thaliana (taxid:3702)]

 Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
 Identities = 201/527 (38%), Positives = 323/527 (61%)

Query:     3 MADP-SPLLCQSNSCTDDQESSDQRSHKQSIS-SLDEI----VEQAILVSLASLFDSQQS 56
             MAD  +PLL       +D+++S   +  + +  SL +       Q +LV LA  FDSQQ 
Sbjct:     1 MADSLAPLL--PTHIEEDEDTSSPLTFDKILEKSLSDFGFSQFLQIVLVGLALTFDSQQI 58

Query:    57 FISVYTEAEPTWHCLNNTTCSSAS-NICMFPKSSWAWDGNPTTTALTIISEWGLECSSAF 115
             FI+V+T+A PTWHCL++T C+ A+ +IC  P+S+W WDG       ++ISE+ LECSS+F
Sbjct:    59 FITVFTDAYPTWHCLDHTICNPATTDICKIPRSAWDWDGG--FKGKSVISEFDLECSSSF 116

Query:   116 IKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIF-SNNLWIYSL 174
             ++ LP+++ + G ++G V LA + D SLGRK LLF S   MS+ T ++IF S+N+WIYS 
Sbjct:   117 LRSLPSSTFYVGSIVGGVVLAMIPDGSLGRKQLLFFSSFAMSL-TGISIFLSSNIWIYSF 175

Query:   175 LRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWT 234
             L+F  G +R+  GT  +VL++E++ T+WR    ++    F +G ++L  IAY  R +SW 
Sbjct:   176 LKFVIGFARSQTGTYALVLISERISTKWRPRATMVPFTLFVLGFMSLSGIAYLVRHASWK 235

Query:   235 IIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSA 294
             ++YL TSIP  ++S  +Y F  ESPRWL ++G+ +EA+EV+K +SP   +N+     + +
Sbjct:   236 VLYLCTSIPAGIHSIFIYFFALESPRWLHLEGKNKEAIEVLKRISP---ANR---GYLES 289

Query:   295 VSFGHEPAAXXXXXXXXXXIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFD 354
             VS    P            I++LF+ +WA  R   +M+  FG+G+ YYG+ L + ++  +
Sbjct:   290 VSSRLRPKETLEQTSSYS-IKDLFIIKWAFRRVTLVMIIMFGLGMSYYGVPLAVRDIKVN 348

Query:   355 IYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDIS 414
             IY+    NA++E+P       +F +T  L+++++R+SS+LV  +I G   ++  V +   
Sbjct:   349 IYMSEALNAMVELP-------TFVVTPILLEQFSRRSSVLVNCLIGGASGVLCFVMSLYG 401

Query:   415 NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLV 474
                 ++   LEL S F A I + ++ IY +ELFPTCVRNSAT ++R A++       ++ 
Sbjct:   402 RT--KIAFALELGSFFCARIGFNLMAIYLVELFPTCVRNSATMMLRQALVVGGACCPLIA 459

Query:   475 AAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKD 521
             + G N   +S+ VFG  +   G F + LPET+G SLCDT++++E +D
Sbjct:   460 SLGRNVPSLSFAVFGFAMSGLGLFALLLPETKGLSLCDTMEEQEQRD 506

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2197244 OCT1 "AT1G73220" [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 190/539 (35%), Positives = 292/539 (54%)

Query:     3 MADPSPLLCQSNSCTDDQESSDQRS--HKQSISSLDEIVEQ------------AILVSLA 48
             M  P P +   +S T+  E++ Q+   + +   ++DE++EQ            A+LVS+A
Sbjct:    12 METP-PNISNDSSATEKGEATRQQQLPNNRYALTVDEVIEQHIGALGFAQILHALLVSIA 70

Query:    49 SLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWG 108
              +FD+Q + IS++++A+P    L        +++C      W W G P +   T++SEW 
Sbjct:    71 WIFDAQTTLISIFSDAQPAARLLATGAIVEGASLCGLASGEWEWIG-PKSD--TVVSEWN 127

Query:   109 LECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNN 168
             L C   F+  +P+   F G L G      LADS  GRK  L LSC+   V      FS N
Sbjct:   128 LICQHKFLVAVPSTLFFIGSLFGSGVYGYLADSWFGRKKTLLLSCVLTFVTAFAISFSPN 187

Query:   169 LWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN 228
             +W+Y+ LRF +G  R+ IG+C IVL TE VG +WRG VG    FFFT+G L+LP +AY  
Sbjct:   188 VWVYAFLRFANGFFRSGIGSCCIVLATEIVGKKWRGQVGQYGFFFFTLGFLSLPLMAYLE 247

Query:   229 RSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQL- 287
             R S W  +Y   S   L Y+  L  F  ESPRWL ++GR +EA+ V+K L+ + +  QL 
Sbjct:   248 RKS-WRNLYRIISFLPLGYAVCLLPFAYESPRWLLVKGRNKEAMVVLKKLARL-NGKQLP 305

Query:   288 -SLSLVSAVSFGHEPAAXXXXXXXXXXIRELFVRRWALERTLALMVPGFGIGVVYYGMTL 346
               LSLV  +    +  +            + +  +WA++R + +M+ GFG G VYYG+ L
Sbjct:   306 ADLSLVDPIPERDDQTSSS---------EKFWKTKWAVKRIIMVMMAGFGSGFVYYGIQL 356

Query:   347 GIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIM 406
               ENL F++YL V  NAL+E P  A  I SF L     +     SS L  F    +C+++
Sbjct:   357 NAENLNFNLYLTVAVNALMEFP--AVFIGSFLLGVMNRRPLFSNSSYLAGFACL-LCAVL 413

Query:   407 AV--VANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAII 464
             ++  V   IS A K +++ +E     ++  AY V+++Y +ELFPT VRN+A S++R A +
Sbjct:   414 SIHRVIRAISVA-KWLQLAVEAVGFMASSTAYDVLYVYCVELFPTNVRNTAVSLLRQAFM 472

Query:   465 FAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKDSV 523
               A  + +LVA G  +  +S+ VFG+  +  G   + L ETR + L +T+ Q+   + +
Sbjct:   473 LGASAAPLLVALGRESAMMSFIVFGVASVLSGIVSLWLRETRNAPLYETLAQQGKAEEI 531

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0015226 "carnitine transmembrane transporter activity" evidence=IDA

GO:0010150 "leaf senescence" evidence=IEP

GO:0015706 "nitrate transport" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2083425 OCT4 "organic cation/carnitine transporter4" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 143/475 (30%), Positives = 236/475 (49%)

Query:    43 ILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWD-GNPTTTAL 101
             +L  +A   ++  + + ++ + EP W C+ +  C   S  C    SSW W  G  ++T  
Sbjct:    54 VLTCIAWALEAFHTMVMIFADQEPEWRCVGSD-CRVGSLNCELDPSSWEWTAGKGSST-- 110

Query:   102 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATS 161
               +SEWGL C   +  GL  A  F GC++G      L+DS LGRK  L + C+  ++   
Sbjct:   111 --VSEWGLICGDKYKVGLVQALFFAGCMIGAGVFGHLSDSKLGRKGSLTVVCIINAIFGI 168

Query:   162 LTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTL 221
              T FS N W Y +LRF +G S   +G    VL TE +G   RG+ G+   +FF+ G   L
Sbjct:   169 ATAFSPNYWTYVVLRFLTGFSTGGVGLTAFVLATEPIGPSKRGVAGMSTFYFFSAGIAVL 228

Query:   222 PAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPI 281
               IAY  RS  W  +++ +S+P+L++  ++  F+SESPRW  ++G+ +EA++++ S++  
Sbjct:   229 SGIAYVFRS--WRELFIVSSLPSLLFLLIVIPFISESPRWYLVRGKVDEAMKLMHSIAKT 286

Query:   282 KDSNQLSLSLVSAVSFGHEPAAXXXXXXXXXXIRELFVRRWALERTLALMVPGFGIGVVY 341
              +   +   +  A+    E             ++++ +      R +  +   F + +VY
Sbjct:   287 -NGRHIPAGVTLALDDDVENNNGERNTAVEGSLKDVILSPLMRMRLVISVAISFTVSIVY 345

Query:   342 YGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISG 401
             YG++L + NL  ++YL V  NA+ E+P       +F +T  L+ K+ RK   +     S 
Sbjct:   346 YGLSLNVGNLKTNLYLNVFVNAVSEMP-------AFAITAVLLDKYGRKPLSIGTQWFS- 397

Query:   402 ICSIMAVVANDISNAG--KRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIM 459
              C +  +V   +  AG  K +R+   +  +F     Y ++FIY  ELFPT VRN+A    
Sbjct:   398 -C-VFCLVGFSVWGAGPWKSVRMVSGVLGIFGMAGTYNLLFIYIAELFPTVVRNAALGCA 455

Query:   460 RLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTI 514
               A    AI +  +V  G   E + +GVF +  +  G     LPET    L DT+
Sbjct:   456 TQAAQMGAILAPFVVVLG---EELPFGVFAVCGLVGGGLAFYLPETLNKPLYDTM 507

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

UNIPROTKB|E2RLI9 SLC22A11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 136/468 (29%), Positives = 222/468 (47%)

Query:    65 EPTWHCLN-NTTCSSASNICMFP-KSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAA 122
             +P W  L+ N T ++ S     P    W +D +  T+  TI+SEW L C    +K +  +
Sbjct:    60 QPQWQLLDPNATATNWSEAATEPCVDGWVYDHSTFTS--TIVSEWDLVCEYQGLKPMGQS 117

Query:   123 SHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGIS 182
              +  G L+G VF   L+D   GRK +L   CL +++A + TIF++N  IY  LRF S   
Sbjct:   118 IYMAGVLMGSVFWGLLSDR-FGRKPVLSWCCLQVALANTSTIFASNFLIYCGLRFLSAFG 176

Query:   183 RATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSI 242
              A I   ++ L+ E   T  R +   +    +++G +TL A+A+  R   W  + L  S 
Sbjct:   177 VAGIIMISVTLVAEWTTTRRRAVTITIVGCSYSLGQMTLGAMAFVLRD--WRALQLAMST 234

Query:   243 PTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFG--HE 300
             P      L+  ++ ES RWL + G+ E+A+  +K +S I    + + SL   V      E
Sbjct:   235 PFFAIF-LISWWLPESARWLIIMGKPEQALRELKKVSRINGHKEATKSLTVEVLMTSMEE 293

Query:   301 PAAXXXXXXXXXXIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYL-GV 359
               A          +  + V RW   R+ ++ +  F   + YYG+ L ++NLG DI+L  V
Sbjct:   294 EVASSKARKSVLDLFLVPVLRW---RSCSMFLVSFSQMISYYGLVLDLQNLGSDIFLLQV 350

Query:   360 VFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMA--VVANDISNAG 417
             +F A   +  LA    +F L+F       R+ +L     I+G+ SI+A  +V  D+    
Sbjct:   351 LFGA---VDLLARATTTFLLSFL-----GRRMTLASFQTIAGL-SILANILVPQDLQT-- 399

Query:   418 KRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG 477
               +R+   +       I+ T I +Y  EL+PT +R +A   ++ A    A+   ++    
Sbjct:   400 --LRVAFAVLGKGCFGISLTSISVYKPELYPTVLRMTADGFLQSAGRLGAVLGPLIRLTR 457

Query:   478 SNNEF---VSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREHKDS 522
                     +SYGV  + I+     ++ LPET+G  L DTI   E + S
Sbjct:   458 QALPLLAPISYGV--IPIVSSLILLLFLPETQGLPLPDTIQDLESQKS 503

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

UNIPROTKB|E2QSD7 SLC22A20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 383 (139.9 bits), Expect = 9.7e-39, Sum P(2) = 9.7e-39
 Identities = 120/459 (26%), Positives = 214/459 (46%)

Query:    65 EPTWHCLN-NTTCSS-ASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAA 122
             EP W  L+ NT+    A+  C   K  W +D +   +  TI+ EW L C +  ++ L  +
Sbjct:    87 EPQWALLSPNTSAHEPATEGC---KDGWVYDRSVFPS--TIVMEWDLVCEARPLRDLAQS 141

Query:   123 SHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGIS 182
              +  G L+G     +LAD  LGRK  L  S L ++V+   T +  +   Y + RF  G++
Sbjct:   142 IYMAGVLVGAAVFGSLADR-LGRKGPLVWSYLQLAVSGVATAYFGSFSAYCISRFLMGMT 200

Query:   183 RATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSI 242
              + I   ++ L+ E + T+ R + G+L  + FT+G L L  +AY  R   W  + L  SI
Sbjct:   201 FSGIILNSLSLVVEWMPTQGRTVAGVLLGYSFTLGQLILAGVAYLIRPWRW--LQLAVSI 258

Query:   243 PTLVYSGLLYIF-VSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEP 301
             P L++   LY + + ES RWL + G+ + AVE ++ ++ +    +    L   V   +  
Sbjct:   259 PFLIF--FLYSWWLPESSRWLLLHGKSQLAVENLRKVAVMNGRAEEGERLTKEVVSSYIQ 316

Query:   302 AAXXXXXXXXXXIRELFVRRWALER-TLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVV 360
             +           I +LF R  A+ + T  LMV  F   + YYG+ + ++  G  +YL  V
Sbjct:   317 SEIASVRTSNS-ILDLF-RTPAIRKVTFCLMVVWFSNSMAYYGLAMDLQKFGLSVYLVQV 374

Query:   361 FNALLEIPN-LASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKR 419
                +++IP  L +T    ++         R++++    I++G+  I+ +   +     + 
Sbjct:   375 LFGVIDIPAMLVATTTMIYV--------GRRATVASFLILAGLMVIVNMFVPEDMQTLRT 426

Query:   420 MRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSN 479
              +  L    L S++I    ++++  EL+PT +R        +   F  + + ++   G  
Sbjct:   427 AQAALGKGCLASSFIC---VYLFTGELYPTEIRQMGMGFASVNARFGGLVAPLVTTLGEF 483

Query:   480 NEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQRE 518
             +  +    FG   I  G  V  L ETR + L +TI+  E
Sbjct:   484 STILPPIGFGATSILAGLAVCFLAETRNAPLVETIEAME 522

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1MII8 SLC22A8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 379 (138.5 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 118/463 (25%), Positives = 208/463 (44%)

Query:    64 AEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAAS 123
             A P+   L N T   A+  C+     W +D N   +   I++EW L C+S  +K L  + 
Sbjct:    77 AYPSNASLPNDT-QGATEPCL---DGWTYDVNSRDS---IVAEWDLVCNSKKLKELAQSI 129

Query:   124 HFTGCLLGIVFLATLADSS-LGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGIS 182
                G L+G + L  L+DS   GRK +L  S L ++ + S   FS     Y++ RF  G  
Sbjct:   130 FMAGILIGGLVLGALSDSCRFGRKPILTCSYLLLAASGSGAAFSPTFPTYTVFRFLCGFG 189

Query:   183 RATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSI 242
              + I   T++L  E V T  R +  I   +F+T G   LP +AY      W  + L  SI
Sbjct:   190 ISGITLSTVILNVEWVSTRMRAIKSIAVGYFYTFGQFVLPGLAYV--IPQWRWLQLTVSI 247

Query:   243 PTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPI----KDSNQLSLSLVSAVSFG 298
             P   +  LL  ++ ES RW+ + GR  +A++ ++ ++      ++  +LSL  +  ++  
Sbjct:   248 PFFAFF-LLSWWLPESIRWMVLSGRSSKALKTLRQVAAFNGKKEEGKKLSLEEIK-LNTQ 305

Query:   299 HEPAAXXXXXXXXXXIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIY-L 357
              E A            R   +RR     T  L +  F  G  YY + +G+E  G ++Y L
Sbjct:   306 KEVALAKAKRSVADLFRTPVLRRM----TFCLSLAWFSTGFAYYSLAMGVEEFGVNLYIL 361

Query:   358 GVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAV-VANDISNA 416
              ++F  +         +P+ F+T   I    R ++   L +++G C +  + V  D+   
Sbjct:   362 QLIFGGV--------DVPAKFITTLAISYLGRHTTEAALLLLAGGCILSLIFVPADLMT- 412

Query:   417 GKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA 476
                +R  L +        +++ +F++  EL+PT  R +   I  +     ++ + ++   
Sbjct:   413 ---LRTVLAVFGKGCLSGSFSCLFLFTSELYPTVTRQTGMGISNMWARVGSMTAPLVKIT 469

Query:   477 GSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQREH 519
                  F+   +FG + +  G   + LPET    L +TI+  E+
Sbjct:   470 AELKPFIPNVIFGSIALLGGSAALFLPETLNRPLPETIEDVEN 512

GO:0005452 "inorganic anion exchanger activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q70BM6 SLC22A8 "Solute carrier family 22 member 8" [Sus scrofa (taxid:9823)]

 Score = 385 (140.6 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
 Identities = 111/419 (26%), Positives = 193/419 (46%)

Query:   102 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATS 161
             +I++EW L CSS+ +K +  +    G L+G + L  L+D   GRK +L  S L +  + S
Sbjct:   108 SIVTEWDLVCSSSKLKEMAQSVFMAGILVGGLVLGALSDR-FGRKPILIFSYLLLGASGS 166

Query:   162 LTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTL 221
                FS    IY++ RF  G S + I   T +L  E V T +R +  I   FF+T G   L
Sbjct:   167 GAAFSPTFSIYAVFRFLCGFSISGISLSTAILNVEWVSTRFRAIKSIAVGFFYTFGQFIL 226

Query:   222 PAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPI 281
             P +AY      W  + L  S+P L +  LL  ++ ES RW+ + G+  +A++ ++ ++  
Sbjct:   227 PGLAYA--IPQWRWLQLTVSVPFLTFF-LLSWWLPESIRWMVLSGKSSKALKTLRQVAIF 283

Query:   282 KDSNQLSLSLVSAVSFGHEPAAXXXXXXXXXXIRELFVRRWALER-TLALMVPGFGIGVV 340
                 +    L S                    I +LF R   L R TL L +  F  G  
Sbjct:   284 NGKKEEGEKL-SLEELKLNLQKEISLAKARHGIADLF-RTPVLRRVTLCLSLAWFATGFA 341

Query:   341 YYGMTLGIENLGFDIY-LGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFII 399
             YY + +G+E  G ++Y L ++F  +         +P+ F+T   I    R  +  ++ ++
Sbjct:   342 YYSLAMGVEEFGVNLYVLQLIFGGV--------DVPAKFITMLSISYLGRHITEGIVLLL 393

Query:   400 SGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIM 459
             +G C I+A++   +     R  + +      S   +++ +F+Y  EL+PT +R +     
Sbjct:   394 AGGC-ILALIFVPLDLMTLRTVLAVFGKGCLSG--SFSCLFLYTSELYPTVIRQTGMGAS 450

Query:   460 RLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQRE 518
              L     ++ + ++   G    F+   +FG + +  G   + LPET    L +TI+  E
Sbjct:   451 NLWARVGSMTAPLVKITGELQPFIPNIIFGTIALLGGSAALFLPETLNRPLPETIEDIE 509

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0005452 "inorganic anion exchanger activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O64515	OCT2_ARATH	No assigned EC number	0.4744	0.9619	0.9582	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	525
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	3e-92
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	4e-22
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-21
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-13
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-09
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	7e-09
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	1e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-07
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	4e-04
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	0.001

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  290 bits (745), Expect = 3e-92
 Identities = 138/484 (28%), Positives = 220/484 (45%), Gaps = 45/484 (9%)

Query: 54  QQSFISVYTEAEPT---------WHCLNNT--TCSSASNICMFPKSSWA----------- 91
             + +S   E   T           CL       ++ S +   P                
Sbjct: 43  DAANLSSRCELNLTLPRLPDGRPESCLRFMVDQWANPSLLGCEPLKLSDLGLAATEPCLD 102

Query: 92  -WDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLF 150
            W+ +  T + TI++EW L C  A+   L  +  F G LLG      L+D   GRK +L 
Sbjct: 103 GWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLL 161

Query: 151 LSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILD 210
           LS L  +V+  LT FS N  ++ + R   G+    I    +VL TE +  + R +VG L 
Sbjct: 162 LSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLI 221

Query: 211 SFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEE 270
             FF++G + LP +AY      W  + L  S+PT ++  LL  FV ESPRWL  QGR EE
Sbjct: 222 QVFFSLGLVLLPLVAYFIP--DWRWLQLAVSLPTFLFF-LLSWFVPESPRWLISQGRIEE 278

Query: 271 AVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLAL 330
           A+++++ ++ I   N   L          +  +SSK+     S  +LF      + TL L
Sbjct: 279 ALKILQRIAKI---NGKKLPAEVLSLSLEKDLSSSKKQ---YSFLDLFRTPNLRKTTLCL 332

Query: 331 MVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRK 390
           M+  F     YYG+ L + NLG +IYL +  + L+E       +P+  +T  LI +  R+
Sbjct: 333 MMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVE-------LPAKLITLLLIDRLGRR 385

Query: 391 SSLLVLFIISGICS-IMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPT 449
            ++    +++G+   ++  V  D+      +R  L +   F    A+ ++++Y  EL+PT
Sbjct: 386 YTMAASLLLAGVALLLLLFVPVDLYF----LRTALAVLGKFGITSAFQMVYLYTAELYPT 441

Query: 450 CVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETRGSS 509
            VRN    +        +I S  LV  G    F+   +FG + +  G   + LPET+G  
Sbjct: 442 VVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETKGVP 501

Query: 510 LCDT 513
           L +T
Sbjct: 502 LPET 505

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 98.5 bits (246), Expect = 4e-22
 Identities = 95/411 (23%), Positives = 161/411 (39%), Gaps = 35/411 (8%)

Query: 118 GLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS--NNLWIYSLL 175
           GL  +    GCL+G +F   L D   GRK  L +  +   +   L  F+   + ++  + 
Sbjct: 49  GLIVSIFSVGCLIGSLFAGKLGDR-FGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVG 107

Query: 176 RFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTL----TLPAIAYTNRSS 231
           R   G+    I     + ++E    + RG +G L     T G L        +   + S 
Sbjct: 108 RVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSD 167

Query: 232 SWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSL 291
            W I      +P ++    L  F+ ESPRWL ++G+ EEA  V+  L  + D +Q     
Sbjct: 168 GWRIPLGLQFVPAILLLIGLL-FLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEE 226

Query: 292 VSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGF----GIGVVYYGMTLG 347
             ++    E   +S    F          R  L   + +M+  F    GI  ++Y     
Sbjct: 227 KDSLERSVEAEKASWLELFRGKT-----VRQRL--LMGVMLQIFQQLTGINAIFYYSPTI 279

Query: 348 IENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMA 407
            E LG      ++   ++ + N   T  +     FL+ ++ R+  LL+      IC ++ 
Sbjct: 280 FETLGLSDS--LLVTIIVGVVNFVFTFIA----IFLVDRFGRRPLLLLGAAGMAICFLVL 333

Query: 408 VVANDISNAGKRMRIGLELASLFSAYIAY------TVIFIYAIELFPTCVRNSATSIMRL 461
            VA       K   I   +  L   +IA+       V ++   ELFP  VR  A +I   
Sbjct: 334 GVALLGVAKSKGAGIVAIVFILL--FIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATA 391

Query: 462 A-IIFAAIFSSVLVAAGSNNEFVSYGVF-GLVIICCGFFVICLPETRGSSL 510
           A  +   +   +            + VF GL+++   F    +PET+G +L
Sbjct: 392 ANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTL 442

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 97.4 bits (243), Expect = 1e-21
 Identities = 95/443 (21%), Positives = 166/443 (37%), Gaps = 44/443 (9%)

Query: 91  AWDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLF 150
            +      +     S WGL  S   +          G  +G +F   L+D   GRK  L 
Sbjct: 57  EFKFTSANSDSYSSSLWGLVVSIFLV----------GGFIGALFAGWLSDR-FGRKKSLL 105

Query: 151 LSCLTMSVA---TSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTE-WRGLV 206
           +  L   +      L  F+ ++ +  + R   GI    I +  + +   ++  +  RG +
Sbjct: 106 IIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIG-VGIASALVPMYLSEIAPKALRGAL 164

Query: 207 GILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYI---FVSESPRWLF 263
             L     T G L          S + T+ +       L+ +GLL++   F+ ESPRWL 
Sbjct: 165 TSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLV 224

Query: 264 MQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWA 323
            +GR EEA + +  L      ++  L  +  +         S + S+ S       RR  
Sbjct: 225 GKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFS--STRRIR 282

Query: 324 LERTLALMVPGF----GIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFL 379
               L +++  F    GI  + Y      EN G       + + ++   N A T  +   
Sbjct: 283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVA--- 339

Query: 380 TFFLIQKWNRKSSLL-------VLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSA 432
             FL+ ++ R+  LL       +   + GI     V  +  S+    +   L   + F+ 
Sbjct: 340 -IFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAM 398

Query: 433 YIAYTVIFIYAIELFPTCVRNSATSIMRLA-----IIFAAIFSSVLVAAGSNNEFVSYGV 487
                V ++   E+FP  +R    SI   A      I   +F ++L + G    F+ +G 
Sbjct: 399 GWG-PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGG 457

Query: 488 FGLVIICCGFFVICLPETRGSSL 510
               ++   F    LPET+G +L
Sbjct: 458 LN--VLGLIFVYFFLPETKGRTL 478

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 82/389 (21%), Positives = 142/389 (36%), Gaps = 48/389 (12%)

Query: 102 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATS 161
            I +EWGL+       G   ++   G   G +F   LAD  +GR+ +L  S L  SV T 
Sbjct: 42  AISAEWGLDPVQL---GFLFSAGLIGMAFGALFFGPLADR-IGRRRVLLWSILLFSVFTL 97

Query: 162 LTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLT- 220
           L   + N+    +LRF +G+    +      L++E     +RG    L    + IG    
Sbjct: 98  LCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVG 157

Query: 221 -------LPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVE 273
                  +P          W  ++    I  L+   LL  F+ ES  +L  +        
Sbjct: 158 GFLAGWLIPVFG-------WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR----PET 206

Query: 274 VIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVP 333
           V + ++ I    Q       A +    P   + + +  S  + LF  + A   T+ L + 
Sbjct: 207 VRRIVNAIAPQMQ-------AEAQSALPEQKATQGTKRSVFKALFQGKTAR-ITVLLWLL 258

Query: 334 GFGIGVVYYGMTLGIENL----GFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNR 389
            F + V  Y +T  +  L    GF + L     AL    N    I S     +L  +   
Sbjct: 259 YFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALF---NFGGVIGSIIFG-WLADRLGP 314

Query: 390 KSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPT 449
           + + L+L + +    ++       +     + +   +A  F      + ++      +PT
Sbjct: 315 RVTALLLLLGAVFAVLVGSTLFSPTL----LLLLGAIAGFFVN-GGQSGLYALMALFYPT 369

Query: 450 CVR----NSATSIMRLAIIFAAIFSSVLV 474
            +R      A  I RL  I   I +  L+
Sbjct: 370 AIRATGVGWAIGIGRLGAIIGPILAGYLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 62/360 (17%), Positives = 118/360 (32%), Gaps = 44/360 (12%)

Query: 113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIY 172
           S    GL   +   G  L       L+D   GR+ +L +  L  ++   L +F+++LW+ 
Sbjct: 30  SPTEIGLLLTAFSLGYALAQPLAGRLSDR-FGRRRVLLIGLLLFALGLLLLLFASSLWLL 88

Query: 173 SLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNRSS 231
            +LR   G+    +      L+ +    E RG    L S  F +G    P +        
Sbjct: 89  LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF 148

Query: 232 SWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSL 291
            W   +L  +I  L+ + L  + +   P                                
Sbjct: 149 GWRAAFLILAILALLAAVLAALLLPRPPPES----------------------------- 179

Query: 292 VSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENL 351
                    P  + +  + L    +L +R   L   LAL++ GF    +   + L  E L
Sbjct: 180 -------KRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVL 232

Query: 352 GFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVAN 411
           G    L  +   L  +           L   L  +  R+  LL+  ++  + ++   + +
Sbjct: 233 GLSALLAGLLLGLAGL----LGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLS 288

Query: 412 DISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSS 471
              ++     +   L   F A + +  +     +L P   R +A+ +   A         
Sbjct: 289 LTESSL--WLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 93/448 (20%), Positives = 156/448 (34%), Gaps = 95/448 (21%)

Query: 118 GLPAASHFTGCLLGIVFLATLADSSLGRKN-------LLFLSCLTMSVATSLTIFSNN-- 168
           G   AS   GC++G       + +  GR++       L F+S L  S        S    
Sbjct: 58  GFCVASALIGCIIGGALGGYCS-NRFGRRDSLKIAAVLFFISALG-SAWPEFGFTSIGPD 115

Query: 169 ----LWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI 224
               +  + + R   GI        + + + E      RG +   + F    G L +  +
Sbjct: 116 NTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFV 175

Query: 225 AYT---NRSSSWTIIYLW------TSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVI 275
            Y    +  +SW     W       +IP L++  LLY FV E+PR+L  +G+QE+A  ++
Sbjct: 176 NYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLY-FVPETPRYLMSRGKQEQAEGIL 234

Query: 276 KSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSF---------LSSIRELFVRRWALER 326
           + +     + Q    +    S  H      K   F         + S+ + FV       
Sbjct: 235 RKIMGNTLATQALQEIKH--SLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFV------- 285

Query: 327 TLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQK 386
                    GI VV Y      + LG    + ++   ++ + NL  T+    L    + K
Sbjct: 286 ---------GINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTV----LAIMTVDK 332

Query: 387 WNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAI-- 444
           + RK     L II  +   MA+             +G    +     +A   +  Y    
Sbjct: 333 FGRKP----LQIIGAL--GMAIGM---------FSLGTAFYTQAPGIVALLSMLFYVAAF 377

Query: 445 -------------ELFPTCVRNSATSIMRLA-IIFAAIFSSVLVAAGSNNEFV------- 483
                        E+FP  +R  A +I   A  I     S        N+  V       
Sbjct: 378 AMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGF 437

Query: 484 SYGVFGLVIICCGFFVICL-PETRGSSL 510
           SY ++G + +    F+    PET+G +L
Sbjct: 438 SYWIYGCMGVLAALFMWKFVPETKGKTL 465

Length = 479

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 96/451 (21%), Positives = 162/451 (35%), Gaps = 67/451 (14%)

Query: 116 IKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTM---SVATSLTIFSNNLWIY 172
           +      S   G L G +F   LAD  LGRK +  +  + M   +VA+ L+  S+   + 
Sbjct: 57  VSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELIIMIIATVASGLSPGSSPKSVM 115

Query: 173 SLLRFFSGISRATIG---TCTIVLLTEKVGTEWRGLV----------GILDSFFFTIGTL 219
           + L F+       IG     + ++ +E    +WRG +          GIL      +  L
Sbjct: 116 ATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175

Query: 220 -----TLPAIAYTNRSSSWTII---YLWTSIPTL--VYSGLLYIF---VSESPRWLFMQG 266
                +L A A     +   +    Y+W  +     V + L   F   + E+PR+     
Sbjct: 176 AGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVA 235

Query: 267 RQEE-AVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALE 325
           +  E A   + ++  +K   +        V          K S         F  R    
Sbjct: 236 KDVEQAASDMSAVLQVKIEAE-----PDEVEKASTAVEVPKASWS-DFFTHFFKWRHGKH 289

Query: 326 RTLALMVPGFGIGVVYYGMTLG----IENLGFDIYLGVVFNALLEIPN---------LAS 372
             L      F + + +YG+ L     +  +G+        NA  E+           LA 
Sbjct: 290 -LLGTAGSWFLLDIAFYGVNLNQKVILSAIGY-SPPAATNNAYEELYKTAVGNLIIALAG 347

Query: 373 TIPSFFLTFFLIQKWNRKSSLLVLFIISGIC-SIMAVVANDISNAGKRMRIGLELASLFS 431
           T+P +++T FL+    RK   L+ F I  +   ++    N +S  G        LA  F+
Sbjct: 348 TVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHG--FLAIYVLAQFFA 405

Query: 432 AYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYG----- 486
            +      FI   E+FPT  R++A  I   +    AI         + +   + G     
Sbjct: 406 NFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGI 465

Query: 487 -------VFGLVIICCGFFVICLPETRGSSL 510
                  +F L +     F + +PET+G SL
Sbjct: 466 WMGHVLEIFALFMFLGILFTLLIPETKGKSL 496

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 5/163 (3%)

Query: 94  GNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSC 153
           G  +     +  + GL   SA   GL  ++   G  LG +    L+D   GR+ +L L  
Sbjct: 16  GLLSPALPLLAEDLGL---SASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGL 71

Query: 154 LTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFF 213
           L  ++ + L  F+++LW+  + RF  G+    +      L+ E    + RG    L S  
Sbjct: 72  LLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAG 131

Query: 214 FTIGTLTLPAIAY-TNRSSSWTIIYLWTSIPTLVYSGLLYIFV 255
           F +G L  P +      S  W  ++L  +I  L+ + LL   +
Sbjct: 132 FGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 135 LATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLL 194
           L+ L     GRK +L +      ++T++   S+N+ +  + RF  G   A        L+
Sbjct: 17  LSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALI 76

Query: 195 TEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYI 253
            +    E RG+   L S    +G L  P +     +   W   +L+ +I  L    LL  
Sbjct: 77  ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF 136

Query: 254 FVSES 258
            + E+
Sbjct: 137 LLPET 141

Length = 141

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 47/191 (24%), Positives = 71/191 (37%), Gaps = 23/191 (12%)

Query: 111 CSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLW 170
           C     KG+     + G ++G  F   LAD  LGRK  L +           + F     
Sbjct: 198 CIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQGYG 256

Query: 171 IYSLLRFFSGISRATIGTCTIVL--LTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYT- 227
            +   R  SG      G   IV     E +  E RG        F+ IG +   A+A+  
Sbjct: 257 FFLFCRLLSGFGIG--GAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314

Query: 228 -------------NRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEV 274
                         +  SW +  +  + P +   G L  F+ ESPR+    G+ +EA  +
Sbjct: 315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL-TFMPESPRFFLENGKHDEAWMI 373

Query: 275 IKSLSPIKDSN 285
           +K    I D+N
Sbjct: 374 LKL---IHDTN 381

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	525
TIGR00898	505	2A0119 cation transport protein.	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
PRK10504	471	putative transporter; Provisional	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
PRK03699	394	putative transporter; Provisional	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	99.98
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.98
PRK03633	381	putative MFS family transporter protein; Provision	99.98
KOG2533	495	consensus Permease of the major facilitator superf	99.98
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.98
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.98
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.98
KOG2532	466	consensus Permease of the major facilitator superf	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
PRK11043	401	putative transporter; Provisional	99.97
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.97
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.97
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.97
PRK09874	408	drug efflux system protein MdtG; Provisional	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
PRK12382	392	putative transporter; Provisional	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.97
PRK10054	395	putative transporter; Provisional	99.97
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.97
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.97
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.97
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
PRK11010	491	ampG muropeptide transporter; Validated	99.96
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.96
PRK15011	393	sugar efflux transporter B; Provisional	99.96
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.96
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.96
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.95
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.95
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.95
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.95
PRK11902	402	ampG muropeptide transporter; Reviewed	99.95
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.95
TIGR00901	356	2A0125 AmpG-related permease.	99.95
PRK09528	420	lacY galactoside permease; Reviewed	99.94
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.94
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.94
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.94
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.93
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.93
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.93
KOG2615	451	consensus Permease of the major facilitator superf	99.93
PTZ00207	591	hypothetical protein; Provisional	99.93
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.92
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.92
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.92
TIGR00805	633	oat sodium-independent organic anion transporter.	99.91
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.9
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.9
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.89
PRK09669	444	putative symporter YagG; Provisional	99.89
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.89
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.89
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.88
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.88
PRK10429	473	melibiose:sodium symporter; Provisional	99.88
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.87
PRK09848	448	glucuronide transporter; Provisional	99.86
PRK11462	460	putative transporter; Provisional	99.84
COG2211	467	MelB Na+/melibiose symporter and related transport	99.84
PF13347	428	MFS_2: MFS/sugar transport protein	99.84
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.83
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.82
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.82
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.78
KOG2563	480	consensus Permease of the major facilitator superf	99.76
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.71
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.65
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.65
KOG3626	735	consensus Organic anion transporter [Secondary met	99.64
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.63
PRK10642	490	proline/glycine betaine transporter; Provisional	99.61
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.59
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.56
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.56
PRK09528	420	lacY galactoside permease; Reviewed	99.47
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.47
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.45
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.43
PRK15011	393	sugar efflux transporter B; Provisional	99.42
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.41
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.38
PRK05122	399	major facilitator superfamily transporter; Provisi	99.36
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.35
PRK12382	392	putative transporter; Provisional	99.35
PRK10489	417	enterobactin exporter EntS; Provisional	99.32
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.3
TIGR00900	365	2A0121 H+ Antiporter protein.	99.29
PRK03545	390	putative arabinose transporter; Provisional	99.29
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.29
PRK10054	395	putative transporter; Provisional	99.29
PRK09874	408	drug efflux system protein MdtG; Provisional	99.28
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.27
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.26
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.26
PRK03633	381	putative MFS family transporter protein; Provision	99.24
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.24
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.23
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.23
KOG3762	618	consensus Predicted transporter [General function	99.23
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.23
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.22
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.22
PRK11663	434	regulatory protein UhpC; Provisional	99.22
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.21
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.21
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.21
TIGR00893	399	2A0114 d-galactonate transporter.	99.21
TIGR00891	405	2A0112 putative sialic acid transporter.	99.21
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.21
PRK10091	382	MFS transport protein AraJ; Provisional	99.2
PRK03699	394	putative transporter; Provisional	99.2
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.19
PRK12307	426	putative sialic acid transporter; Provisional	99.19
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.19
PRK09705	393	cynX putative cyanate transporter; Provisional	99.19
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.17
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.16
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.16
TIGR00895	398	2A0115 benzoate transport.	99.16
PLN00028	476	nitrate transmembrane transporter; Provisional	99.16
PRK10504	471	putative transporter; Provisional	99.14
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.14
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.14
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.14
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.13
PRK09952	438	shikimate transporter; Provisional	99.13
PRK11043	401	putative transporter; Provisional	99.13
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.12
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.11
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.11
PRK03893	496	putative sialic acid transporter; Provisional	99.11
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.11
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.1
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.09
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.09
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.09
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.08
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.07
TIGR00898	505	2A0119 cation transport protein.	99.07
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.07
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.05
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.04
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.04
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.04
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.03
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.01
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.0
PRK11010	491	ampG muropeptide transporter; Validated	99.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.98
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.96
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.95
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.94
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.94
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.93
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.92
PRK15075	434	citrate-proton symporter; Provisional	98.92
KOG2615	451	consensus Permease of the major facilitator superf	98.91
PRK10133	438	L-fucose transporter; Provisional	98.91
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.9
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.9
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.9
PRK11902	402	ampG muropeptide transporter; Reviewed	98.9
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.88
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.87
KOG0569	485	consensus Permease of the major facilitator superf	98.86
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.86
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.85
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.85
TIGR00805	633	oat sodium-independent organic anion transporter.	98.84
PRK10429	473	melibiose:sodium symporter; Provisional	98.84
PRK09848	448	glucuronide transporter; Provisional	98.84
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.84
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.82
PTZ00207	591	hypothetical protein; Provisional	98.81
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.8
KOG3810	433	consensus Micronutrient transporters (folate trans	98.8
TIGR00901	356	2A0125 AmpG-related permease.	98.79
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.79
COG0477	338	ProP Permeases of the major facilitator superfamil	98.77
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.77
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.75
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.75
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.75
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.75
PRK09669	444	putative symporter YagG; Provisional	98.71
KOG2532	466	consensus Permease of the major facilitator superf	98.69
PF13347	428	MFS_2: MFS/sugar transport protein	98.69
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.66
KOG0637	498	consensus Sucrose transporter and related proteins	98.65
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.6
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.59
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.55
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.55
KOG0254	513	consensus Predicted transporter (major facilitator	98.52
COG2211	467	MelB Na+/melibiose symporter and related transport	98.46
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.45
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.43
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.42
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.39
PRK11462	460	putative transporter; Provisional	98.38
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	98.35
KOG2533	495	consensus Permease of the major facilitator superf	98.32
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.31
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.25
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.23
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.19
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.11
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.11
KOG3762	618	consensus Predicted transporter [General function	98.1
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.05
COG3202	509	ATP/ADP translocase [Energy production and convers	97.99
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.89
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.89
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.67
PF12832	77	MFS_1_like: MFS_1 like family	97.57
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.51
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.41
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.4
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.37
KOG2563	480	consensus Permease of the major facilitator superf	97.3
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.28
PF12832	77	MFS_1_like: MFS_1 like family	97.22
KOG3880	409	consensus Predicted small molecule transporter inv	97.11
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.06
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.9
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	96.86
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.84
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.49
COG0477	338	ProP Permeases of the major facilitator superfamil	96.39
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.38
KOG3626	735	consensus Organic anion transporter [Secondary met	96.08
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.97
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.88
PRK03612	521	spermidine synthase; Provisional	95.71
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	95.69
KOG3097	390	consensus Predicted membrane protein [Function unk	95.68
PRK03612	521	spermidine synthase; Provisional	95.65
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.47
KOG0637	498	consensus Sucrose transporter and related proteins	95.33
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.32
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.73
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	94.63
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	92.4
COG3202	509	ATP/ADP translocase [Energy production and convers	92.33
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.07
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	88.74
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	86.77
KOG2881	294	consensus Predicted membrane protein [Function unk	83.92
KOG3880	409	consensus Predicted small molecule transporter inv	82.27
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	82.08

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=2.2e-45  Score=375.08  Aligned_cols=450  Identities=29%  Similarity=0.509  Sum_probs=365.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCC--CCC--------------CCCCCCCCCC------------------
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNN--TTC--------------SSASNICMFP------------------   86 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~--~~~--------------~~~~~~c~~~------------------   86 (525)
                      .++++++..+..+++.....+....|+|+|+.+  ++.              ..+.+.|.+.                  
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~f~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (505)
T TIGR00898        10 TFLLLALPIALLAFHFVLIVFLGATPEHHCRLPDAANLSSRCELNLTLPRLPDGRPESCLRFMVDQWANPSLLGCEPLKL   89 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCCCcccCChHhHhceeccCCCCCCCCCCccccccchhhhcccccccchh
Confidence            566778889999999999999999999999721  110              0112344322                  


Q ss_pred             -----------CCCceecCCCCccccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHH
Q 041759           87 -----------KSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLT  155 (525)
Q Consensus        87 -----------~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~  155 (525)
                                 ..+|.|+.++.  .|.+.+|||+.|+++.+.+++.+++.+|..+++++.|+++|| +|||++++++.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~  166 (505)
T TIGR00898        90 SDLGLAATEPCLDGWEYSYDTF--SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLV  166 (505)
T ss_pred             cccCCCCCCCCCCCcEecCCcc--cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHH
Confidence                       12478887666  899999999988879999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhccCCchHH
Q 041759          156 MSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTI  235 (525)
Q Consensus       156 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~  235 (525)
                      .+++.++.++++|++.++++|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.  +||+
T Consensus       167 ~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~wr~  244 (505)
T TIGR00898       167 TAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--DWRW  244 (505)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988776  5999


Q ss_pred             HHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhh
Q 041759          236 IYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIR  315 (525)
Q Consensus       236 ~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (525)
                      .|++.+++.++.. +..+++||+|+|+..+++.+++.+.+++..+ .++...+.+..+...+.+..++++     ..+++
T Consensus       245 ~~~~~~i~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  317 (505)
T TIGR00898       245 LQLAVSLPTFLFF-LLSWFVPESPRWLISQGRIEEALKILQRIAK-INGKKLPAEVLSLSLEKDLSSSKK-----QYSFL  317 (505)
T ss_pred             HHHHHHHHHHHHH-HHHHhcCCChHHHHHCCCHHHHHHHHHHHHH-HcCCCCCHHHHhhhhhhhhhhccC-----CCcHH
Confidence            9999999888777 5557899999999999999888887777644 333322222111111110000011     13678


Q ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHH
Q 041759          316 ELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLV  395 (525)
Q Consensus       316 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~  395 (525)
                      +++++|.++...+...+.++.....++.++.+.+..+.+......+.++..+       ++.++.+++.||+|||+.+.+
T Consensus       318 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~~l~dr~grr~~~~~  390 (505)
T TIGR00898       318 DLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVEL-------PAKLITLLLIDRLGRRYTMAA  390 (505)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChHHHHHHHHHHHH-------HHHHHHHHHHHHhCCHHHHHH
Confidence            8999999888888887888888888888888888888887777666666666       899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 041759          396 LFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~  475 (525)
                      +.++.+++++++.+.+..   ......+..++.+++.+..++..+.+..|.+|++.|++++|+.+....+|++++|++.+
T Consensus       391 ~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       391 SLLLAGVALLLLLFVPVD---LYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             HHHHHHHHHHHHHHcCCC---chHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence            998888888777665443   22344555666667777788889999999999999999999999999999999999998


Q ss_pred             hccCchhHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 041759          476 AGSNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCD  512 (525)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (525)
                      ....+...++.+++++.+++.++.+++||++++++++
T Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~~  504 (505)
T TIGR00898       468 LGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE  504 (505)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence            5545567788888888888877788889999887654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.5e-42  Score=356.56  Aligned_cols=417  Identities=20%  Similarity=0.297  Sum_probs=322.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      ++++++++.+.+++|...+++.                                     +|.+.+++++   +..+.+++
T Consensus       168 l~~i~~l~~~~~g~d~~~is~i-------------------------------------lp~i~~~~gl---s~~~~g~l  207 (742)
T TIGR01299       168 LFFVLGLALMADGVEVFVVGFV-------------------------------------LPSAEKDLCI---PDSGKGML  207 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHhCC---CHHHHHHH
Confidence            5677788888899999999999                                     9999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      .+++.+|.+++++++|+++|| +|||+++++++++.++++++++++++++.++++|++.|++.|+..+...+++.|++|+
T Consensus       208 ~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~  286 (742)
T TIGR01299       208 GLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ  286 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHHHHhc-c-------------CCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcC
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAIAYTN-R-------------SSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQG  266 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l~~~~-~-------------~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~  266 (525)
                      ++|++.++++.+++.+|.++++.+++.+ .             ..+||+++++.+++.++.+ +..+++||||+|+..++
T Consensus       287 ~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~l-l~~~~lPESPrwL~~~g  365 (742)
T TIGR01299       287 EKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAI-GALTFMPESPRFFLENG  365 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHCC
Confidence            9999999999999999999998774332 1             2479999999888877766 77788999999999999


Q ss_pred             CHHHHHHHHHhhCCCcCCccc--hhhh-----hhhc-cCCC--Cccccc---------cc----ccchhhhhhhhcchhH
Q 041759          267 RQEEAVEVIKSLSPIKDSNQL--SLSL-----VSAV-SFGH--EPAASS---------KE----SSFLSSIRELFVRRWA  323 (525)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~-~~~~--~~~~~~---------~~----~~~~~~~~~l~~~~~~  323 (525)
                      +.+++.+.++++.+ .|....  +...     .+.. .+.+  +.++..         +.    ...+..++++++.+ +
T Consensus       366 r~~eA~~iL~~i~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~  443 (742)
T TIGR01299       366 KHDEAWMILKLIHD-TNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-V  443 (742)
T ss_pred             CHHHHHHHHHHHhc-CCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCcc-H
Confidence            99999999998865 443211  1110     0000 0000  000000         00    00011356666654 4


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccccc----------------------------------------------CC----
Q 041759          324 LERTLALMVPGFGIGVVYYGMTLGIENL----------------------------------------------GF----  353 (525)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~----  353 (525)
                      ++.++..++.+++..+.+|++..+++++                                              |+    
T Consensus       444 ~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (742)
T TIGR01299       444 REITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKS  523 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccc
Confidence            7778888888888777777765543311                                              00    


Q ss_pred             -h--------------------------------------------------------------------hHHHHHHHHH
Q 041759          354 -D--------------------------------------------------------------------IYLGVVFNAL  364 (525)
Q Consensus       354 -~--------------------------------------------------------------------~~~~~~~~~~  364 (525)
                       .                                                                    .........+
T Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l  603 (742)
T TIGR01299       524 VSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFL  603 (742)
T ss_pred             cccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHH
Confidence             0                                                                    0001111222


Q ss_pred             hcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 041759          365 LEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAI  444 (525)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (525)
                      ..+    +.+++.+++++++||+|||+++.++.++.+++++++.+....     ...+++.++.+++.+..++....+++
T Consensus       604 ~~l----~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~-----~~ll~~~~l~g~~~~~~~~~~~a~~a  674 (742)
T TIGR01299       604 GTL----AVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSE-----SAMIALLCLFGGLSIAAWNALDVLTV  674 (742)
T ss_pred             HHH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            223    666999999999999999999999999999988887766543     23444555667777778899999999


Q ss_pred             cccCcchhhhhhHHHHHHHHHHHHHHHHHHhh-ccCchhHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 041759          445 ELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA-GSNNEFVSYGVFGLVIICCGFFVICLPETRGSSL  510 (525)
Q Consensus       445 ~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (525)
                      |.+|++.|++++|+.+....+|++++|++.+. ...+...++++++++.++++++.+++||++++.+
T Consensus       675 El~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~~~~l  741 (742)
T TIGR01299       675 ELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTRGQVL  741 (742)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence            99999999999999999999999999999873 3334566778888887877777778899887653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.8e-39  Score=329.95  Aligned_cols=417  Identities=19%  Similarity=0.234  Sum_probs=291.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeec-----cccccchhh
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISE-----WGLECSSAF  115 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~-----~~~~~~s~~  115 (525)
                      .+.+++++.+++++|...++..                                     .|.+.++     .+.   +..
T Consensus        17 ~~~~~~~~~~~~g~d~~~~~~~-------------------------------------~~~~~~~~~~~~~~~---~~~   56 (502)
T TIGR00887        17 AIVIAGVGFFTDSYDLFCISLV-------------------------------------TKMLGYVYYHGKGPL---PSS   56 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHhccCcccc---hHH
Confidence            6778888999999999999888                                     5555443     234   667


Q ss_pred             hhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHhhcccchhhh
Q 041759          116 IKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNN------LWIYSLLRFFSGISRATIGTC  189 (525)
Q Consensus       116 ~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~  189 (525)
                      +.+++.+.+.+++.++++++|+++|| +|||+++.++.++++++.++++++++      ++.++++|+++|++.|...+.
T Consensus        57 ~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  135 (502)
T TIGR00887        57 VSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPL  135 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHH
Confidence            78999999999999999999999999 99999999999999999999988765      789999999999999999999


Q ss_pred             hheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc------------------------cCCchHHHHHHHHHHHH
Q 041759          190 TIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN------------------------RSSSWTIIYLWTSIPTL  245 (525)
Q Consensus       190 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~------------------------~~~~wr~~f~~~~~~~~  245 (525)
                      ...+++|++|+++|++++++.+.+..+|.++++.++..+                        .+++||++|.+.+++.+
T Consensus       136 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~  215 (502)
T TIGR00887       136 SAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL  215 (502)
T ss_pred             HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988775422                        12479999999888888


Q ss_pred             HHHhHhheeecCCchHhhhcCCHH-HHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcch---
Q 041759          246 VYSGLLYIFVSESPRWLFMQGRQE-EAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRR---  321 (525)
Q Consensus       246 ~~~~~~~~~lpesp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---  321 (525)
                      +.. +..+++||||+|+..+++.+ ++++.+.+..+ .+.++..++..+.++    .++..     ..+++++++++   
T Consensus       216 i~~-~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~-----~~~~~~l~~~~~~~  284 (502)
T TIGR00887       216 LAL-YFRLTIPETPRYTADVAKDVEQAASDMSAVLQ-VKIEAEPDEVEKAST----AVEVP-----KASWSDFFTHFFKW  284 (502)
T ss_pred             HHH-HHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc-cccccCcccccchhc----cccch-----hhhHHHHHHHHhhh
Confidence            776 66788999999998877764 45555555422 111111111000000    00001     12566666532   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhh----hhhcccccCChhHHH-----------HH-HHHHhcccccccCchhHHHHHHHHH
Q 041759          322 WALERTLALMVPGFGIGVVYYG----MTLGIENLGFDIYLG-----------VV-FNALLEIPNLASTIPSFFLTFFLIQ  385 (525)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~l~d  385 (525)
                      +.++..+.....++...+.+|.    .|.++++.|.+....           .. ...+..+    +.+++.++.++++|
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~g~~~~~~l~d  360 (502)
T TIGR00887       285 RHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALA----GTVPGYWVTVFLVD  360 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
Confidence            2223333333333444334444    344455556543210           00 1111112    45578899999999


Q ss_pred             hhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHH
Q 041759          386 KWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIF  465 (525)
Q Consensus       386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~  465 (525)
                      |+|||++++++..+.+++++++....... ..........+...+......+..+.+..|.+|++.|+++.|+.+..+.+
T Consensus       361 r~gRR~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~  439 (502)
T TIGR00887       361 IIGRKPIQLMGFFILTVLFFVLGFAYNHL-STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKA  439 (502)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhh
Confidence            99999999888887777766665432210 00111111111111222234467788899999999999999999999999


Q ss_pred             HHHHHHHHHhhccC------------chhHHHHHHHHHHHHHHHHHHhccCCCCCCccchH
Q 041759          466 AAIFSSVLVAAGSN------------NEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTI  514 (525)
Q Consensus       466 g~~~~p~i~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (525)
                      +++++|.+.+....            +....+.+++++++++.++.+++||+++++++|.+
T Consensus       440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~leei~  500 (502)
T TIGR00887       440 GAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSLEELS  500 (502)
T ss_pred             HHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCCCCHHhhh
Confidence            99999999874211            22456777777777776666777999998876543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=5.6e-39  Score=287.46  Aligned_cols=412  Identities=22%  Similarity=0.326  Sum_probs=339.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      .......+++-+.+.....+..                                     .|.+.+.+|.   +..+..++
T Consensus        79 l~~~ag~gwmad~m~~m~~s~i-------------------------------------~~~l~~~w~~---s~~q~~ll  118 (528)
T KOG0253|consen   79 LFFVAGMGWMADAMEMMLLSLI-------------------------------------LPALDEVWGP---SEGQAPLL  118 (528)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHH-------------------------------------HHHHHhhhch---hhhhhhHH
Confidence            6778888999999999999999                                     8999999998   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      ......|..+++..+|..+|+ +|||+.+.+..+..++..++.++++|+.++++.|.+.|+|.|+ .|...++-.|..|.
T Consensus       119 t~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~  196 (528)
T KOG0253|consen  119 TLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPS  196 (528)
T ss_pred             HHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccC
Confidence            999999999999999999999 9999999999999999999999999999999999999999998 88888888999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhC
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAIAYT-NRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLS  279 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l~~~-~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~  279 (525)
                      .+|...+-.. ..+.+|.++...++++ +..+||||.....+.+..+.+ ...+++|||||++..+++.+++.+.+++++
T Consensus       197 ~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a-~f~~w~~ESpRf~~~~G~~~kAletL~kiA  274 (528)
T KOG0253|consen  197 SHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAA-RFLVWVYESPRFYLAKGDDYKALETLHKIA  274 (528)
T ss_pred             cCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHH-HHHhhcccCcchhhhcCChHHHHHHHHHHH
Confidence            9998887777 9999999999998765 467899999999888877777 888899999999999999999999999998


Q ss_pred             CCcCCccchhhhhhhcc------CCCC--cccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 041759          280 PIKDSNQLSLSLVSAVS------FGHE--PAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENL  351 (525)
Q Consensus       280 ~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (525)
                      + .|+++.+....+...      +..+  +.+.+..+....+..+++ .|.+++..+.....+++..+.+|+..++..++
T Consensus       275 r-mNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLl-sp~lrkttlllw~iwfgnafsyyg~VLlttel  352 (528)
T KOG0253|consen  275 R-MNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLL-SPKLRKTTLLLWRIWFGNAFSYYGSVLLTTEL  352 (528)
T ss_pred             H-hcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhc-ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            8 887765533222211      1100  011111112223455555 46678888888899998888888764432111


Q ss_pred             ---------------------------CChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHH
Q 041759          352 ---------------------------GFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICS  404 (525)
Q Consensus       352 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~  404 (525)
                                                 .-..+...++.++..+       +|.++.++++||+|||+.+..++++.+++.
T Consensus       353 fqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaef-------PGlLIt~~iverlGRKkTMal~l~~f~ifl  425 (528)
T KOG0253|consen  353 FQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEF-------PGLLITGVIVERLGRKKTMALSLILFGIFL  425 (528)
T ss_pred             HhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhC-------CchhHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence                                       0112345566777777       999999999999999999999999999998


Q ss_pred             HHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhccCchhHH
Q 041759          405 IMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVS  484 (525)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~~~~~~~~  484 (525)
                      +++......     ....+..+...++..+.+...+.|.+|++|+..|+++.|.+.....+|+++.|++.-........+
T Consensus       426 fll~~c~~r-----n~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~  500 (528)
T KOG0253|consen  426 FLLTTCKTR-----NAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLP  500 (528)
T ss_pred             HHHHHhcCc-----chhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHHhccceeeh
Confidence            888776544     356677788889999999999999999999999999999999999999999999995444556788


Q ss_pred             HHHHHHHHHHHHHHHHhcc-CCCCCCc
Q 041759          485 YGVFGLVIICCGFFVICLP-ETRGSSL  510 (525)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~-~~~~~~~  510 (525)
                      ..+++.+++++.+...++| |+|+|.+
T Consensus       501 i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  501 IFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             HHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            8888888888888777775 8888764

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.5e-38  Score=305.49  Aligned_cols=394  Identities=22%  Similarity=0.279  Sum_probs=301.3

Q ss_pred             hhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHhhcccchhhhh
Q 041759          114 AFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS---NNLWIYSLLRFFSGISRATIGTCT  190 (525)
Q Consensus       114 ~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~  190 (525)
                      +...+.+.+++.+|.++|+++.|+++|| +|||..++++.++..++.++..++   +++++++++|++.|+..|......
T Consensus        59 ~~lwS~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~  137 (485)
T KOG0569|consen   59 DLLWSLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLV  137 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHH
Confidence            4567889999999999999999999999 999999999998888888777664   789999999999999999999999


Q ss_pred             heeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH--Hhc-cCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhh-cC
Q 041759          191 IVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA--YTN-RSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFM-QG  266 (525)
Q Consensus       191 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~--~~~-~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~-~~  266 (525)
                      +.|+.|..|++.||....+.+.+.++|.+++..++  .++ ....|++.+.+..+++++.. +...++||||+|+.. ++
T Consensus       138 pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l-~~l~~~PESPk~Ll~~k~  216 (485)
T KOG0569|consen  138 PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL-ALLPFLPESPKYLLIKKG  216 (485)
T ss_pred             HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH-HHHhcCCCCcchHHHHcC
Confidence            99999999999999999999999999999998774  344 45579999999999999988 888999999999988 89


Q ss_pred             CHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHH-----HHHH
Q 041759          267 RQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGI-----GVVY  341 (525)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~  341 (525)
                      +++++++.++..+. .++.+...+....+.+.++.+++++     .+++++++++..++...+.+...++.     +...
T Consensus       217 ~~~~A~~sl~~y~G-~~~~~~~~e~~~~e~~~~~~~~~~~-----~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~  290 (485)
T KOG0569|consen  217 DEEEARKALKFYRG-KEDVEAEIEEMLREIEEEELEKKKQ-----ISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIF  290 (485)
T ss_pred             CHHHHHHHHHHHhC-CCcchhHHHHHHHHHHHhccccccC-----CcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeH
Confidence            99999999999844 4332222222111111111111111     58999999999888877666665543     3455


Q ss_pred             hhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccc-c-chh
Q 041759          342 YGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISN-A-GKR  419 (525)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~  419 (525)
                      ++...++++.|++...+.......++    ..++.++++.+++||+|||++++.+..++.+..+++.......+ . +|.
T Consensus       291 ~Yst~i~~~aG~~~~~a~~an~~~g~----v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~  366 (485)
T KOG0569|consen  291 FYSTSIFKTAGFTPEEAQYANLGIGI----VNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWL  366 (485)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            56667777888888777766666665    55599999999999999999999999998888777765432210 1 122


Q ss_pred             --HHHHHHHHHHHHHHHH-HHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHH
Q 041759          420 --MRIGLELASLFSAYIA-YTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIIC  494 (525)
Q Consensus       420 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~  494 (525)
                        ..+++.++..+..+.+ -|+.+.+.+|++|++.|+.++++....+++..++..+....  ...+. ..|.++.+.+.+
T Consensus       367 ~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~  445 (485)
T KOG0569|consen  367 SYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAI  445 (485)
T ss_pred             HHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHH
Confidence              2233333333333333 47899999999999999999999999998888876666542  11223 666666665555


Q ss_pred             HH-HHHHhccCCCCCCccchHHHhccc
Q 041759          495 CG-FFVICLPETRGSSLCDTIDQREHK  520 (525)
Q Consensus       495 ~~-~~~~~~~~~~~~~~~~~~~~~~~~  520 (525)
                      .. .++.++||||+|+..|+.++.+++
T Consensus       446 ~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  446 FLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            54 456778999999999988876654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=2.6e-36  Score=308.67  Aligned_cols=460  Identities=28%  Similarity=0.496  Sum_probs=357.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCcccccc---------CCCCCCCCCC-----------------CCCCCCCCceecC
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCL---------NNTTCSSASN-----------------ICMFPKSSWAWDG   94 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~---------~~~~~~~~~~-----------------~c~~~~~~~~~~~   94 (525)
                      .....++.......+.....+....|+++|.         .+|..+.+.+                 .+..-..+|.|+.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (521)
T KOG0255|consen   20 LLLLLGLPSIFSALHSFAQIFLAFVPDHHCTEWGCLNDAEDSCLVYWDPTLDPANPLNWPSWKKWLLVIVICLDGWVYDY   99 (521)
T ss_pred             HHHHHHHHHhHHHHHHHHHHhhccCCCchhhhhhcccCCcccceecccCccCcCCccccccccccccccccccceeEecC
Confidence            4555666666666677777788788875552         2333110000                 1122346788887


Q ss_pred             CCCccccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 041759           95 NPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSL  174 (525)
Q Consensus        95 ~p~~~~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~  174 (525)
                      +..  .-++..++++.|++.....+..+++++|.++|++++|+++|| +|||+++++++++.+++.++.++++|++.+++
T Consensus       100 ~~~--~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~  176 (521)
T KOG0255|consen  100 GSS--VYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAPNYWMFLI  176 (521)
T ss_pred             CCC--cccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            666  556666688888899999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             HHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhHhhee
Q 041759          175 LRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIF  254 (525)
Q Consensus       175 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  254 (525)
                      .|++.|++.+....+...++.|++++++|+.+.++....+..|.+..+..+++..  +||+.+++..++.++.+ +.+++
T Consensus       177 ~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~-~~~~l  253 (521)
T KOG0255|consen  177 FRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFL-LLWFL  253 (521)
T ss_pred             HHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHH-HHHHc
Confidence            9999999999999999999999999999999999944455555555555577777  99999999999999887 55777


Q ss_pred             ecCCchHhhhcCCHHHHHHHHHhhCCCcCCccc-hhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHH
Q 041759          255 VSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQL-SLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVP  333 (525)
Q Consensus       255 lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  333 (525)
                      .||+|+|+..+++.+++.+.+++..+ .|+... ..+..+......+..  .........+.++++.|++++.++...+.
T Consensus       254 ~~Es~rwl~~~g~~~~a~~~l~~~a~-~n~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~  330 (521)
T KOG0255|consen  254 PPESPRWLLSKGRIDEAIKILKKIAK-LNGRKLSVKELLRLELLLRPLK--LLFTEPKISFLDLFRTPRLRYRTLYLLFI  330 (521)
T ss_pred             cCcChHHHHHcCchHHHHHHHHHHHh-hcCCCCCcHHHHHHHHHhhHhh--hhccCCCCchhhhhcCHHHHHHHHHHHHH
Confidence            78999999999999999999888755 432211 111111110000000  00000113578899999888999999999


Q ss_pred             HHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccc
Q 041759          334 GFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDI  413 (525)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~  413 (525)
                      ++.....++.+.+....+|.+.+......+....       ++....+...|++|||.....+..+..++++...+....
T Consensus       331 ~~~~~~~y~gl~~~~~~lg~~~~~~~~~~~~~~~-------p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~  403 (521)
T KOG0255|consen  331 WFVFSLVYYGLSLNVSGLGGNIYLNFTLSGLVEL-------PAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD  403 (521)
T ss_pred             HHHHhHHHHhhhhhhhhcCchHHHHHHHHHHHHh-------hHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9889999999999999999999988888888777       888888999999999999999999999999999988766


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHH
Q 041759          414 SNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG-SNNEFVSYGVFGLVI  492 (525)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~-~~~~~~~~~~~~~~~  492 (525)
                      .  ......+...+..++.+..+...+.+..|++|+..|..+.+.......+|++++|.+.... .......+.+++...
T Consensus       404 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~  481 (521)
T KOG0255|consen  404 L--GGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLA  481 (521)
T ss_pred             c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Confidence            1  1124666777777888888888899999999999999999999999999999999998642 223333434445555


Q ss_pred             HHHHHHH-HhccCCCCCCccchHHHhc
Q 041759          493 ICCGFFV-ICLPETRGSSLCDTIDQRE  518 (525)
Q Consensus       493 ~~~~~~~-~~~~~~~~~~~~~~~~~~~  518 (525)
                      .+..++. .++||++++.+.+..++.+
T Consensus       482 ~l~~~~~~~~lpet~~~~l~~t~~~~~  508 (521)
T KOG0255|consen  482 LLLGLLSLLLLPETKGKPLPGTLLDAE  508 (521)
T ss_pred             HHHHHHHHhcCcccCCCCCchhHHHHH
Confidence            5555444 8889999999888776666

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.8e-38  Score=287.41  Aligned_cols=394  Identities=14%  Similarity=0.127  Sum_probs=310.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      +++.+.+++...++.+-+.+++                                     .|.+.+|.++   |..|+|++
T Consensus        30 if~~~fiGYa~fYl~RknF~~a-------------------------------------~p~l~e~~~l---sk~~lG~i   69 (448)
T COG2271          30 IFLSIFIGYAAFYLTRKNFNLA-------------------------------------MPALIEDGGL---SKTQLGIL   69 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhc-------------------------------------cHHHHHhcCC---CHHHHHHH
Confidence            8999999999999999999999                                     9999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      .+.+.+.+.++-++.|.++|| .+.|+.+.+++++.++.+++++++++.+.+.+..+++|...|.-+|.+...++.|+++
T Consensus        70 ~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr  148 (448)
T COG2271          70 GSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR  148 (448)
T ss_pred             HHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHH---HHhccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHh
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAI---AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKS  277 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l---~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~  277 (525)
                      +|||+..++++++.++|..+.|++   +.+..+.+||..|++.++++++..++.++.++|+|+-.-.. +.++.      
T Consensus       149 ~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP-~ie~~------  221 (448)
T COG2271         149 KERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP-PIEEY------  221 (448)
T ss_pred             cccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CHHHh------
Confidence            999999999999999999987765   45556779999999999999999988888899988532111 11111      


Q ss_pred             hCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHH-HHHHhhhhhcccccCChhH
Q 041759          278 LSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGI-GVVYYGMTLGIENLGFDIY  356 (525)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  356 (525)
                          .++..   +..+.+++.+.      ......-.+.+++||..|...+..++.+..= .+..+...++.+..|++..
T Consensus       222 ----~~d~~---e~~~~~~~~~~------ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~  288 (448)
T COG2271         222 ----RGDPL---EIYEEEKENEG------LTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLV  288 (448)
T ss_pred             ----hcCch---hhhhhhccCCC------ccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHH
Confidence                00000   00000000000      0000134566899999888777777766653 4555665566667899999


Q ss_pred             HHHHHHHHhcccccccCchhHHHHHHHHHhh--cChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHH
Q 041759          357 LGVVFNALLEIPNLASTIPSFFLTFFLIQKW--NRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYI  434 (525)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (525)
                      .+....++..+    ++++|+++.||++||+  |||....+.+.+.....++..+....  .++.+..++.+..|+...+
T Consensus       289 ~a~~a~~lfE~----agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~--~~~~l~~~~l~~iGf~IyG  362 (448)
T COG2271         289 KANWAISLFEV----AGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPN--GSYLLDAILLFIIGFLIYG  362 (448)
T ss_pred             HHHHHHHHHHH----HhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCC--ccHHHHHHHHHHHHHHHhh
Confidence            99999999999    9999999999999996  67766655555544444444444333  2456777777777777777


Q ss_pred             HHHHHHhhhccccCcchhhhhhHHHHHHHHH-HHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHHHh
Q 041759          435 AYTVIFIYAIELFPTCVRNSATSIMRLAIIF-AAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFVIC  501 (525)
Q Consensus       435 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  501 (525)
                      ..-+.-..+.|..|++..|++.|+...+.++ |+..+.+..++  +..++...|.++.+.++++.++...
T Consensus       363 PqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         363 PQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             HHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence            7777788899999999999999999999998 88888887775  3346667777776666666554433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=1.5e-37  Score=315.60  Aligned_cols=422  Identities=18%  Similarity=0.270  Sum_probs=292.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeecc--------cccc
Q 041759           40 EQAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEW--------GLEC  111 (525)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~--------~~~~  111 (525)
                      ...++.+++.+.+++|...++..                                     .|.++++|        ++  
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~--   52 (479)
T PRK10077         12 SITLVATLGGLLFGYDTAVISGT-------------------------------------VESLNTVFVAPQNLSESA--   52 (479)
T ss_pred             HHHHHHHHHHHhcCcccceehHh-------------------------------------HHHHHHHhcccccccccC--
Confidence            36777888899999998888877                                     55555544        88  


Q ss_pred             chhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHH
Q 041759          112 SSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS------------NNLWIYSLLRFFS  179 (525)
Q Consensus       112 ~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~------------~~~~~l~~~r~l~  179 (525)
                       +..+.+++.+++.++.+++++++|+++|| +|||++++++.++++++.++++++            ++++.++++|+++
T Consensus        53 -~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~  130 (479)
T PRK10077         53 -ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG  130 (479)
T ss_pred             -ChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence             88999999999999999999999999999 999999999999999998888763            2357789999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc---------cCCchHHHHHHHHHHHHHHHhH
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN---------RSSSWTIIYLWTSIPTLVYSGL  250 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~---------~~~~wr~~f~~~~~~~~~~~~~  250 (525)
                      |++.|...+...++++|++|+++|++++++.+.+..+|.++++.++..+         ...+||++|++.+++.++.. +
T Consensus       131 G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~  209 (479)
T PRK10077        131 GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-M  209 (479)
T ss_pred             hhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-H
Confidence            9999999999999999999999999999999999999999988775432         35699999999888888776 5


Q ss_pred             hheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHH
Q 041759          251 LYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLAL  330 (525)
Q Consensus       251 ~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  330 (525)
                      ..+++||+|+|+..+++.++.++..++..+ .++.  .....+..+...+.    +     ...+..+.-.  .......
T Consensus       210 ~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~----~-----~~~~~~~~~~--~~~~~~~  275 (479)
T PRK10077        210 LLYFVPETPRYLMSRGKQEQAEGILRKIMG-NTLA--TQALQEIKHSLDHG----R-----KTGGKLLMFG--VGVIVIG  275 (479)
T ss_pred             HHHcCCCCcHHHHHcCCHHHHHHHHHHHcC-ChhH--HHHHHHHHHHHHHh----h-----hhhhhhcchh--HHHHHHH
Confidence            677899999998777777776666555522 1111  11100000000000    0     0000111100  0111111


Q ss_pred             H-HHHH----HHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHH
Q 041759          331 M-VPGF----GIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSI  405 (525)
Q Consensus       331 ~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~  405 (525)
                      + ...+    ......++.|.+.++.|.+............+    +.+++.++.+++.||+|||+++..+.++.+++.+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~----~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~  351 (479)
T PRK10077        276 VMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGV----INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMF  351 (479)
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHH----HHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHH
Confidence            1 1111    12233445566666777765544444333333    4558899999999999999999999998888877


Q ss_pred             HHHHhccccccchhHHHHHHHHHHHHHHHH-HHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--------
Q 041759          406 MAVVANDISNAGKRMRIGLELASLFSAYIA-YTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--------  476 (525)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--------  476 (525)
                      ++......+ ..........++.+.+.+.. .+..+.++.|.+|++.|++++|+.+....+|+++++.+.+.        
T Consensus       352 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~  430 (479)
T PRK10077        352 SLGTAFYTQ-APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLV  430 (479)
T ss_pred             HHHHHHhcC-cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchh
Confidence            765443220 11212222333333333332 36778999999999999999999999999998888666542        


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHH-HhccCCCCCCccchHHHhcccCC
Q 041759          477 GSNNEFVSYGVFGLVIICCGFFV-ICLPETRGSSLCDTIDQREHKDS  522 (525)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  522 (525)
                      ...+....+.+++++++++.++. ++.||+|+++.+|.+++.++..|
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  477 (479)
T PRK10077        431 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPETK  477 (479)
T ss_pred             hhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhccc
Confidence            12334556666666655555543 45689998888776666555444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=1.2e-36  Score=308.16  Aligned_cols=393  Identities=16%  Similarity=0.109  Sum_probs=270.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchh-hhhh
Q 041759           40 EQAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSA-FIKG  118 (525)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~-~~~g  118 (525)
                      +......++++++++|....++.                                     .|.+.++|+...+.. ...+
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~-------------------------------------~~~i~~~~~~~~~~~~~~~~   58 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFV-------------------------------------AYALGKVFFPGADPSVQMIA   58 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHhhCCCCCcHHHHHH
Confidence            36777889999999999999999                                     889999987521111 1122


Q ss_pred             h--HHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHH--------HHHHHHHHhhcccchhh
Q 041759          119 L--PAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWI--------YSLLRFFSGISRATIGT  188 (525)
Q Consensus       119 ~--~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~  188 (525)
                      .  +.++.++++.++++++|+++|| +|||+++.+++++++++++++++++|++.        ++++|+++|++.|...+
T Consensus        59 ~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~  137 (490)
T PRK10642         59 ALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYT  137 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHH
Confidence            2  2578889999999999999999 99999999999999999999999999875        89999999999999999


Q ss_pred             hhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc---------cCCchHHHHHHHHHHHHHHHhHhheeecCCc
Q 041759          189 CTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN---------RSSSWTIIYLWTSIPTLVYSGLLYIFVSESP  259 (525)
Q Consensus       189 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~---------~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp  259 (525)
                      ...+++.|++|+++|+++.++...+..+|.++++.+..++         ..+|||++|++.+++.++.. ++...+||+|
T Consensus       138 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~-~~~~~~~esp  216 (490)
T PRK10642        138 GASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGL-YLRHALEETP  216 (490)
T ss_pred             HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHH-HHHHcCCCCh
Confidence            9999999999999999999999999888888887653221         25799999999887666544 5667889999


Q ss_pred             hHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHH----HHH
Q 041759          260 RWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMV----PGF  335 (525)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~  335 (525)
                      +|...+++.++.        . .+  ..          .+    .++     .++++++++.  ++.......    ...
T Consensus       217 ~~~~~~~~~~~~--------~-~~--~~----------~~----~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~  264 (490)
T PRK10642        217 AFQQHVDKLEQG--------D-RE--GL----------QD----GPK-----VSFKEIATKH--WRSLLTCIGLVIATNV  264 (490)
T ss_pred             hHHHHHHhhhhh--------c-cc--cc----------cc----ccc-----CCHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence            864322111100        0 00  00          00    000     2455555532  111221111    112


Q ss_pred             HHHHHHhhhhhcc-cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHH-HHHhccc
Q 041759          336 GIGVVYYGMTLGI-ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIM-AVVANDI  413 (525)
Q Consensus       336 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~-~~~~~~~  413 (525)
                      ........+|.++ +.+|.+............+    +.+++.++.|+++||+|||+.+..+.++..+..+. +......
T Consensus       265 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~----~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~  340 (490)
T PRK10642        265 TYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMI----GMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN  340 (490)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            2222333445555 4567776665555555445    66688899999999999999888777654433322 2222221


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc--c-CchhHHHHHHHH
Q 041759          414 SNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG--S-NNEFVSYGVFGL  490 (525)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~--~-~~~~~~~~~~~~  490 (525)
                         +....++..++.+++.+...+....+..|.+|++.|+++.|+.+....+++.++|.+.+..  . .+...++.+..+
T Consensus       341 ---~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~  417 (490)
T PRK10642        341 ---VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMV  417 (490)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence               1223444455555666666667778888999999999999987777777788888888742  1 223444444555


Q ss_pred             HHHHHHHHHHhccCCCCCCc
Q 041759          491 VIICCGFFVICLPETRGSSL  510 (525)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~  510 (525)
                      ..+++.+..+++||++++..
T Consensus       418 ~~~i~~~~~~~~pes~~~~~  437 (490)
T PRK10642        418 VAVIGLITGVTMKETANRPL  437 (490)
T ss_pred             HHHHHHHHHHHhccccCCCC
Confidence            55555566666788766544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=1.3e-35  Score=301.86  Aligned_cols=423  Identities=21%  Similarity=0.249  Sum_probs=287.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeecccccc-----chhh
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLEC-----SSAF  115 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~-----~s~~  115 (525)
                      ..+++.++.+...++.......                                     .+.+..+++...     .+..
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~   71 (481)
T TIGR00879        29 LSLIAAIGGLMFGYDTGVIGGA-------------------------------------LALPAFEFKFTSANSDSYSSS   71 (481)
T ss_pred             HHHHHHHHHHhcccccchhhhh-------------------------------------hhcHHHHHhcCCcccCCCChh
Confidence            5556666677777787777777                                     777777777610     1389


Q ss_pred             hhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHhhcccchhhhhhe
Q 041759          116 IKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS---NNLWIYSLLRFFSGISRATIGTCTIV  192 (525)
Q Consensus       116 ~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~  192 (525)
                      +.+++.+++.++..++++++|+++|| +|||++++++.++++++.+++.+.   .+++.++++|+++|++.+...+...+
T Consensus        72 ~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~  150 (481)
T TIGR00879        72 LWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPM  150 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHH
Confidence            99999999999999999999999999 999999999999999999998654   35668999999999999999999999


Q ss_pred             eeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH---Hhc-cCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCH
Q 041759          193 LLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA---YTN-RSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQ  268 (525)
Q Consensus       193 ~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~---~~~-~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~  268 (525)
                      ++.|++|+++|++++++.+.+..+|.+++++++   ... ...+||+.|++.++..++.. +..+++||+|++...+++.
T Consensus       151 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~  229 (481)
T TIGR00879       151 YLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPESPRWLVGKGRV  229 (481)
T ss_pred             HHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCChHHHHHcCCh
Confidence            999999999999999999999999999999988   443 46799999999777666655 6677889999887666666


Q ss_pred             HHHHHHHHhhCCCcCCccchhhh-hhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHH----HHHHHhh
Q 041759          269 EEAVEVIKSLSPIKDSNQLSLSL-VSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFG----IGVVYYG  343 (525)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~  343 (525)
                      ++..+..++... .++.+..... .+......+.+.+.++.. .....+..++ ..+...+..++..+.    .....+.
T Consensus       230 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (481)
T TIGR00879       230 EEARKSLARLRG-TSGEDKELLDELELIDIKRSIEKRSVQPS-WGSLFSSTRR-IRRRLFLGVVLQWFQQFTGINAIMYY  306 (481)
T ss_pred             HHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhhcccc-HHHHHhcCch-hHHHHHHHHHHHHHHHHhCCeehHHH
Confidence            555544444322 1111111000 000000000000000000 1122222222 112222222222222    2233455


Q ss_pred             hhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcc--ccc----cc
Q 041759          344 MTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVAND--ISN----AG  417 (525)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~  417 (525)
                      .+.+.++.|.+............+    +.+++.++.+++.||++||+.+.++..+.+++.+++.....  ...    .+
T Consensus       307 ~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (481)
T TIGR00879       307 SPTIFENAGVSTDHAFLVSIIVGA----VNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG  382 (481)
T ss_pred             HHHHHHHcCCCchHHHHHHHHHHH----HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence            677777788887666666665555    66689999999999999999999888887777766653211  100    01


Q ss_pred             hhHHHHHHHHHHHHHH-HHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHH
Q 041759          418 KRMRIGLELASLFSAY-IAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIIC  494 (525)
Q Consensus       418 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~  494 (525)
                      +... ....+...+.+ ...+....+..|.+|++.|+++.++.+....+|++++|.+.+.  ...++...|++.++++++
T Consensus       383 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~  461 (481)
T TIGR00879       383 NVAI-VFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVL  461 (481)
T ss_pred             HHHH-HHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHH
Confidence            2222 22222222333 2335667778999999999999999999999999999998884  333566677777777766


Q ss_pred             HHHHH-HhccCCCCCCc
Q 041759          495 CGFFV-ICLPETRGSSL  510 (525)
Q Consensus       495 ~~~~~-~~~~~~~~~~~  510 (525)
                      +.++. ++.+|+++++.
T Consensus       462 ~~i~~~~~~~~~~~~~~  478 (481)
T TIGR00879       462 GLIFVYFFLPETKGRTL  478 (481)
T ss_pred             HHHHHheecccCCCCCh
Confidence            66554 44577766553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=2.2e-35  Score=297.38  Aligned_cols=393  Identities=16%  Similarity=0.081  Sum_probs=278.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      ++.+.++++++...|+.+.+.+                                     .|.+++|+|+   +..+.|++
T Consensus        30 i~~~~~~~~~~~y~~r~~~~~~-------------------------------------~~~i~~~~~~---s~~~~g~~   69 (467)
T PRK09556         30 SYLVVFIGYLTMYLIRKNFKAA-------------------------------------QNDMISTYGL---STTELGMI   69 (467)
T ss_pred             HHHHHHHHHHHHHHHhcChhhh-------------------------------------hHHHHHhcCC---CHHHHHHH
Confidence            7888888999999999999998                                     9999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhcccchhhhhheeeE
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIF-----SNNLWIYSLLRFFSGISRATIGTCTIVLLT  195 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~  195 (525)
                      .+++.+++.+++++.|+++|| +|||+++.++.++++++.++.++     ++|++.+++.|+++|++.+...+...++++
T Consensus        70 ~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~  148 (467)
T PRK09556         70 GLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTIT  148 (467)
T ss_pred             HHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            999999999999999999999 99999999988888877776665     589999999999999999999999999999


Q ss_pred             eeecCcchhhHHhHHHHHHHHHHHHHHHHHH-hccC---CchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHH
Q 041759          196 EKVGTEWRGLVGILDSFFFTIGTLTLPAIAY-TNRS---SSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEA  271 (525)
Q Consensus       196 ~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~-~~~~---~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~  271 (525)
                      |++|+++|+++++++..+.++|.+++++++. ....   .+||..|.+.+++.++..++.+++++|+|+..... +.++ 
T Consensus       149 ~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~-  226 (467)
T PRK09556        149 RWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE-  226 (467)
T ss_pred             HHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh-
Confidence            9999999999999999999999999988743 3222   26999999988888877656666667766421000 0000 


Q ss_pred             HHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhh-hhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-c
Q 041759          272 VEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSS-IRELFVRRWALERTLALMVPGFGIGVVYYGMTLGI-E  349 (525)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  349 (525)
                        .   . + + ....+    +  ++.+     +++.+.... .+..+++|.++...+..++.........+..|.++ +
T Consensus       227 --~---~-~-~-~~~~~----~--~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~  287 (467)
T PRK09556        227 --I---F-G-E-PISEE----D--KETE-----STDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQ  287 (467)
T ss_pred             --c---c-c-C-ccchh----h--hccc-----cccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0   0 0 0 00000    0  0000     000000011 23377888877666555554444433444455554 5


Q ss_pred             ccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 041759          350 NLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASL  429 (525)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (525)
                      .+|.+..+.+.......+    +.+++.++.|+++||++||+.......+..+...++......   +.....+..++.+
T Consensus       288 ~~g~s~~~a~~~~~~~~~----~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~G  360 (467)
T PRK09556        288 ELGFSKEDAINTFTLFEI----GALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHAT---SEYMYLASLFALG  360 (467)
T ss_pred             ccCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence            689998888777776666    777999999999999999887766544443333222222111   1223334444444


Q ss_pred             HHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHH-HHHHHHHHHhh--c------------cCchhHHHHHHHHHHHH
Q 041759          430 FSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIF-AAIFSSVLVAA--G------------SNNEFVSYGVFGLVIIC  494 (525)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-g~~~~p~i~~~--~------------~~~~~~~~~~~~~~~~~  494 (525)
                      ++.............|.+|++.+|++.|+.+...++ |..++|.+.|.  +            ..++...|.+++++.++
T Consensus       361 ~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~  440 (467)
T PRK09556        361 FLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIG  440 (467)
T ss_pred             HHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHH
Confidence            333333333345667999999999999999999986 77899999884  3            23466777777777777


Q ss_pred             HHHHHHhc
Q 041759          495 CGFFVICL  502 (525)
Q Consensus       495 ~~~~~~~~  502 (525)
                      +.+..+++
T Consensus       441 ~~~~~~~~  448 (467)
T PRK09556        441 CICLMAIV  448 (467)
T ss_pred             HHHHHHHH
Confidence            66655544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=1.4e-34  Score=288.73  Aligned_cols=375  Identities=14%  Similarity=0.113  Sum_probs=253.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhh-
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGL-  119 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~-  119 (525)
                      .+...+++++++.+|..+.+++                                     .|.+.++++....+..+.+. 
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~-------------------------------------~~~l~~~~~~~~~~~~~~~~~   65 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYVYSFC-------------------------------------SLYFAHIFFPSGNTTTQLLQT   65 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHhCCCCCchHHHHHH
Confidence            5666778999999999999999                                     89999998521114444443 


Q ss_pred             --HHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhcccchhhh
Q 041759          120 --PAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLW--------IYSLLRFFSGISRATIGTC  189 (525)
Q Consensus       120 --~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~  189 (525)
                        +.+..+++..++++++|+++|| +|||+++..+.++++++++++++++++.        .++++|+++|++.|...+.
T Consensus        66 ~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~  144 (432)
T PRK10406         66 AGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGT  144 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence              4445555566999999999999 9999999999999999999999988864        6899999999999999999


Q ss_pred             hheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc---------cCCchHHHHHHHHHHHHHHHhHhheeecCCch
Q 041759          190 TIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN---------RSSSWTIIYLWTSIPTLVYSGLLYIFVSESPR  260 (525)
Q Consensus       190 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~---------~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~  260 (525)
                      ..+++.|++|+++|+++.++.+.+...|.++++++...+         ..+|||++|++.+++.++.. +....+||+|+
T Consensus       145 ~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~~~  223 (432)
T PRK10406        145 SATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVAL-WLRRQLDETSQ  223 (432)
T ss_pred             HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH-HHHhcCCCCch
Confidence            999999999999999999999988888888887664332         25799999999888887765 56666788764


Q ss_pred             HhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHH-HHHHHH
Q 041759          261 WLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVP-GFGIGV  339 (525)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~  339 (525)
                      +..      +  +      + .                      ++     .++++++++++.+...+...+. ......
T Consensus       224 ~~~------~--~------~-~----------------------~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  261 (432)
T PRK10406        224 QET------R--A------L-K----------------------EA-----GSLKGLWRNRRAFIMVLGFTAAGSLCFYT  261 (432)
T ss_pred             HHH------h--h------h-c----------------------cc-----ccHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            210      0  0      0 0                      00     2456677777654433332222 222222


Q ss_pred             HHhhhhhcc-cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHH-hccccccc
Q 041759          340 VYYGMTLGI-ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVV-ANDISNAG  417 (525)
Q Consensus       340 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  417 (525)
                      ....+|.++ +..|.+.........+..+    +.+++.++.|+++||++||+.+.++..+..+....+.. ....  .+
T Consensus       262 ~~~~lp~~l~~~~g~s~~~~~~~~~i~~~----~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~--~~  335 (432)
T PRK10406        262 FTTYMQKYLVNTAGMHANVASGIMTAALF----VFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNV--SS  335 (432)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcC--Cc
Confidence            223334444 5578877666665555444    44577788899999999998877766554433332221 1111  11


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHH-HHHHHHHHHhhcc-Cc-hhHHHHHHHHHHHH
Q 041759          418 KRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIF-AAIFSSVLVAAGS-NN-EFVSYGVFGLVIIC  494 (525)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-g~~~~p~i~~~~~-~~-~~~~~~~~~~~~~~  494 (525)
                      ....+....+..+..+...+..+.+.+|.+|++.|+++.|+.+...++ .+...|++.+... .+ +...+...+++.++
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i  415 (432)
T PRK10406        336 PYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVV  415 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            222222223333333444456778889999999999999999987654 3445777666421 12 33344445555555


Q ss_pred             HHHHHHhc
Q 041759          495 CGFFVICL  502 (525)
Q Consensus       495 ~~~~~~~~  502 (525)
                      +.+..+++
T Consensus       416 ~~~~~~~l  423 (432)
T PRK10406        416 AFLVSLML  423 (432)
T ss_pred             HHHHHHHh
Confidence            55544444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.4e-34  Score=271.11  Aligned_cols=368  Identities=16%  Similarity=0.111  Sum_probs=304.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      .++.+.++.|..+..-+.+.-.                                     +|++++|+|+   |..+.|++
T Consensus        14 ~l~aLa~~~F~igttEfv~~gL-------------------------------------Lp~iA~dl~v---s~~~aG~l   53 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGL-------------------------------------LPPIAADLGV---SEGAAGQL   53 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhc-------------------------------------hHHHHHHcCC---CHHHHHHH
Confidence            4777888888888888888888                                     9999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      .|+|.++..+++++...+.|| +.||++++..+.++.++++++++++||+.++++|++.|+..|..++...++..+..|+
T Consensus        54 is~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp  132 (394)
T COG2814          54 ITAYALGVALGAPLLALLTGR-LERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPP  132 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhC
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAIAYTN-RSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLS  279 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l~~~~-~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~  279 (525)
                      ++|++++++...+.+++.++|..+|.++ +.+|||+.|++.+.++++..+..+..+|  |+.     ..+          
T Consensus       133 ~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~-----~~~----------  195 (394)
T COG2814         133 GKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSE-----ISG----------  195 (394)
T ss_pred             cchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc-----CCC----------
Confidence            9999999999999999999999996555 5689999999999999999988888888  210     000          


Q ss_pred             CCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhh-hhcccccCChhHHH
Q 041759          280 PIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGM-TLGIENLGFDIYLG  358 (525)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  358 (525)
                         ..+.                       ...+..+++|+|..+..++..++...++...|.++ |+..+..|++....
T Consensus       196 ---~~~~-----------------------~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~v  249 (394)
T COG2814         196 ---SLPG-----------------------PLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAV  249 (394)
T ss_pred             ---CCCc-----------------------chhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHH
Confidence               0000                       00245678899998888888888887777666555 66666688888888


Q ss_pred             HHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHH
Q 041759          359 VVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTV  438 (525)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (525)
                      .......++    +.++|..++|++.|| +.|+.+.....+..+..+.+.+....    .....+..++.++........
T Consensus       250 s~~Ll~~Gv----~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~----~~~~~~~~~~wg~a~~~~~~~  320 (394)
T COG2814         250 SLVLLAFGI----AGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGAS----PALALALLFLWGFAFSPALQG  320 (394)
T ss_pred             HHHHHHHHH----HHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcch----HHHHHHHHHHHHHHhhhhhhH
Confidence            887777777    888999999999999 88888888888888888887777665    334555555566666665556


Q ss_pred             HHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHHHhc
Q 041759          439 IFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFVICL  502 (525)
Q Consensus       439 ~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (525)
                      ......+.. ++.+..+.+++....++|..+|..+.|.  +..++....+..+++.+++.++.+..
T Consensus       321 ~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         321 LQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             HHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            666666644 4567999999999999999999999884  44566666777777777666655544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=4.2e-35  Score=290.07  Aligned_cols=387  Identities=13%  Similarity=0.130  Sum_probs=269.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      +.++++++++++.+|..+++++                                     .|.+++|+|+   +..+.|++
T Consensus         9 ~~~~~~~~~~~~~~d~~~~~~~-------------------------------------~~~l~~~~~~---s~~~~g~~   48 (412)
T TIGR02332         9 LIIFLFILFIFSFLDRINIGFA-------------------------------------GLTMGKDLGL---SATMFGLA   48 (412)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHH-------------------------------------HHhhHhhcCC---CHHHHHHH
Confidence            6788888999999999999999                                     8999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      .+++.+++.+++++.|+++|| +|||+++..++++++++++++++++|++.+++.|+++|++.+...+....++.|++|+
T Consensus        49 ~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~  127 (412)
T TIGR02332        49 ATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPA  127 (412)
T ss_pred             HHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHHHHhc-------cCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHH
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAIAYTN-------RSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVE  273 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l~~~~-------~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~  273 (525)
                      ++|++++++++.+.++|.+++++++..+       +..|||+.|++.+++.++..++.++++||+|+.... -+.++.+.
T Consensus       128 ~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~  206 (412)
T TIGR02332       128 YFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKA  206 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHH
Confidence            9999999999999999999999985433       236999999999998887776777888998842100 01111111


Q ss_pred             HHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhccccc--
Q 041759          274 VIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENL--  351 (525)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  351 (525)
                      ..+.. + .++.+.++..    .+.++ +    +......+++++ +|.++...+..++...........+|.+++++  
T Consensus       207 ~~~~~-~-~~~~~~~~~~----~~~~~-~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~  274 (412)
T TIGR02332       207 LKEMI-D-NDQLTLEQPE----GAFAH-A----AMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQ  274 (412)
T ss_pred             HHHHH-H-hccccccccc----ccccc-c----cccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            11111 0 0000000000    00000 0    000012344555 45545444443433334444445566667664  


Q ss_pred             CChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhH-HHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHH
Q 041759          352 GFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSS-LLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLF  430 (525)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (525)
                      +.+....+.......+    +.+++.++.++++||+++|+. ......+..++..+ ......   .. .......+..+
T Consensus       275 ~~s~~~~~~~~~~~~l----~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~-~~~~~~---~~-~~~~~~~~~~~  345 (412)
T TIGR02332       275 GSSNIMIGLLAAIPQF----CTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLL-ASATDH---NL-IQLLGIIMASM  345 (412)
T ss_pred             CCcHHHhHHHhhHHHH----HHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHH-HHhcCC---HH-HHHHHHHHHHH
Confidence            5566666666666666    777999999999999997764 33333333333322 222111   11 22222222233


Q ss_pred             HHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhcc--C-chhHHHHHHHH
Q 041759          431 SAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGS--N-NEFVSYGVFGL  490 (525)
Q Consensus       431 ~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~~--~-~~~~~~~~~~~  490 (525)
                      +.....+..+....|.+|++.|+++.|+.+...++|++++|.+.+...  . ++...+.++++
T Consensus       346 g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~  408 (412)
T TIGR02332       346 GSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA  408 (412)
T ss_pred             HhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence            333333445556678899999999999999999999999999998522  2 34555555444

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=7e-35  Score=282.33  Aligned_cols=347  Identities=11%  Similarity=-0.005  Sum_probs=251.8

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      +|.+++|||+   +..+.|++.+.+.+++.+++++.|+++|| +|||+++..+......+.+....++|++.++++|+++
T Consensus        14 lp~i~~~~~~---s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~   89 (368)
T TIGR00903        14 LSLVAEDIDV---SKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLA   89 (368)
T ss_pred             HHHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            8999999999   99999999999999999999999999999 9999987666555555443333447999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |++.+. .+.....++|++|+++|++++++.+.+..+|.+++++++ .+.+..|||+.|++.+++.++..++.++++||+
T Consensus        90 G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~  168 (368)
T TIGR00903        90 ALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPAL  168 (368)
T ss_pred             HhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999986 455556669999999999999999999999999999884 455678999999998888887776777889998


Q ss_pred             chHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 041759          259 PRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIG  338 (525)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (525)
                      |++..   +..+.+    +.                                ..++++++++|.++...+..++......
T Consensus       169 p~~~~---~~~~~~----~~--------------------------------~~~~~~ll~~~~~~~~~~~~~~~~~~~~  209 (368)
T TIGR00903       169 PFQAA---EGFGFK----DA--------------------------------VKEFGALAGRKDLWIIGAILGFGVALFD  209 (368)
T ss_pred             CCCCC---CCcchH----HH--------------------------------HHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence            75310   000000    00                                0246778899887776666655555554


Q ss_pred             HHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcCh---hHHH-HHHHHHHHHHHHHHHhcccc
Q 041759          339 VVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRK---SSLL-VLFIISGICSIMAVVANDIS  414 (525)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~---~~~~-~~~~~~~~~~~~~~~~~~~~  414 (525)
                      .....+|.++++.|++.. .+....+..+       .+.+..+++.||..||   +... ....+.++....+....+. 
T Consensus       210 ~~~~wlp~~L~~~g~s~~-~~~~~~l~~~-------~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~-  280 (368)
T TIGR00903       210 NLAIWLEAALRPAGLEDI-AGDAVALAIL-------AGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNR-  280 (368)
T ss_pred             HHHHHHHHHHHHCCCChH-HHHHHHHHHH-------HHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcccc-
Confidence            444556666677777654 4444444444       4555567888887543   3322 2333333333333322222 


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q 041759          415 NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIIC  494 (525)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~~~~~~~~~~~~~~~~~~  494 (525)
                         + ..+.+..+.+++....++..+++.+|.+|++.|+++.|+.+..+++|++++|.+.+....+....|.++++..++
T Consensus       281 ---~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i  356 (368)
T TIGR00903       281 ---L-ALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITI  356 (368)
T ss_pred             ---H-HHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence               2 334455556666677777888999999999999999999999999999999988874333566777777777777


Q ss_pred             HHHHHHhcc
Q 041759          495 CGFFVICLP  503 (525)
Q Consensus       495 ~~~~~~~~~  503 (525)
                      +.+..+.++
T Consensus       357 ~~~~~~~~~  365 (368)
T TIGR00903       357 AFAIALLLP  365 (368)
T ss_pred             HHHHHHhCC
Confidence            766654433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=7.8e-34  Score=282.04  Aligned_cols=373  Identities=17%  Similarity=0.155  Sum_probs=280.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      +..+..+..+.+++|....+..                                     .|.+.+++|+   ++.+.|++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~---s~~~~g~~   55 (406)
T PRK11551         16 TIGLCFLVALLEGLDLQSAGVA-------------------------------------APRMAQEFGL---DVAQMGWA   55 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHhCC---CHHHHHHH
Confidence            6777778888999999988888                                     8999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      .+++.++..+++++.|+++|| +|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+
T Consensus        56 ~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~  134 (406)
T PRK11551         56 FSAGILGLLPGALLGGRLADR-IGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGP  134 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhC
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAIA-YTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLS  279 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~  279 (525)
                      ++|++++++.+.+..+|..+++.++ .+....+||+.|++.++..++..++...++||+|++...+++.++.+       
T Consensus       135 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------  207 (406)
T PRK11551        135 RLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA-------  207 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh-------
Confidence            9999999999999999999999885 45566799999999887776666456667898775422111100000       


Q ss_pred             CCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcch---hHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhH
Q 041759          280 PIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRR---WALERTLALMVPGFGIGVVYYGMTLGIENLGFDIY  356 (525)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (525)
                                                      ...+..++++   ..+......+.............|.+.++.|.+..
T Consensus       208 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~  255 (406)
T PRK11551        208 --------------------------------PVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRS  255 (406)
T ss_pred             --------------------------------hhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChh
Confidence                                            0011111111   11111111111122222333345666777888887


Q ss_pred             HHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHH
Q 041759          357 LGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAY  436 (525)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (525)
                      ..+...+...+    +.+++.++.+++.||++||+.+..+.....++.+++....+.     ....+..++.+++.....
T Consensus       256 ~~~~~~~~~~~----~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~  326 (406)
T PRK11551        256 QAGLVQIAFNI----GGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSF-----AGMLLAGFAAGLFVVGGQ  326 (406)
T ss_pred             hhhHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHHHHHhHH
Confidence            77777777666    777999999999999999998888766666665555443322     234455566666666777


Q ss_pred             HHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhcc-C--chhHHHHHHHHHHHHHHHHHHhc
Q 041759          437 TVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGS-N--NEFVSYGVFGLVIICCGFFVICL  502 (525)
Q Consensus       437 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~  502 (525)
                      +...++..|.+|++.|+++.|+.+....+|..++|.+.|... .  +....+...+.+.+++.++.+.+
T Consensus       327 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        327 SVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            888899999999999999999999999999999999999532 1  23334444444444444444444

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=7.9e-34  Score=283.36  Aligned_cols=390  Identities=13%  Similarity=0.060  Sum_probs=271.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      +.....++++...++....+..                                     .|.+.+++|+   +..+.|++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~g~---s~~~~g~~   63 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAA-------------------------------------MPEMLADLGL---SRSDIGLL   63 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHh-------------------------------------hHHHHHhcCC---CHHHHHHH
Confidence            5666777888888888877777                                     8999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      .+.+.+++.+++++.|+++|| +|||+++.++.++.+++.++.+++++++.+++.|++.|++.|...+...+++.|++|+
T Consensus        64 ~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~  142 (434)
T PRK11663         64 ATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR  142 (434)
T ss_pred             HHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH
Confidence            999999999999999999999 9999999999999999999999999999999999999999999899999999999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhC
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLS  279 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~  279 (525)
                      ++|++++++.+.+.++|.++++.+ +.+...++||+.|++.+++.++..++..+++||+|++...+...+.         
T Consensus       143 ~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~---------  213 (434)
T PRK11663        143 TERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEW---------  213 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccc---------
Confidence            999999999999999999999987 5666778999999998888776654555667887643210000000         


Q ss_pred             CCcCCccchhhhhhhccCCCCcccccccccchhhh-hhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCChhHH
Q 041759          280 PIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSI-RELFVRRWALERTLALMVPGFGIGVVYYGMTLGI-ENLGFDIYL  357 (525)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  357 (525)
                        .++      ..+..++.+.     ++.+....+ ...++++.++...+..+.............|.++ +++|.+...
T Consensus       214 --~~~------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~  280 (434)
T PRK11663        214 --RHD------ALELAQQQEG-----AGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVT  280 (434)
T ss_pred             --ccc------ccccchhccc-----cCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH
Confidence              000      0000000000     000000112 1356677655554444433333333333445555 567888888


Q ss_pred             HHHHHHHhcccccccCchhHHHHHHHHHhh--cChhHH-HHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHH
Q 041759          358 GVVFNALLEIPNLASTIPSFFLTFFLIQKW--NRKSSL-LVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYI  434 (525)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~--g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (525)
                      .+...+...+    +.+++.++.|++.||+  ++|+.. ........+....+......   +........+..+++...
T Consensus       281 a~~~~~~~~~----~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~  353 (434)
T PRK11663        281 ANSAVSMFEL----GGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFA---SYVMQAACFFTIGFFVFG  353 (434)
T ss_pred             HHHHHHHHHH----HHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccc---cHHHHHHHHHHHHHHHhh
Confidence            8877777777    7779999999999998  333332 22222222222222222222   122222222223332222


Q ss_pred             HHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHHH
Q 041759          435 AYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFVI  500 (525)
Q Consensus       435 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~  500 (525)
                      ..........|.+|++.|+++.|+.+...++|..++|.+.|.  +..++...|...+++.+++.+..+
T Consensus       354 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        354 PQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            223344567899999999999999999999999999999885  334566777777777766655443

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=1.1e-33  Score=278.98  Aligned_cols=344  Identities=13%  Similarity=0.016  Sum_probs=261.5

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      +|.+++|+|+   ++.+.|++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++++++++++|++.++++|+++
T Consensus        32 ~~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~  107 (390)
T PRK03545         32 LSDIAQSFHM---QTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGI  107 (390)
T ss_pred             hHHHHhHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            7899999999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHH-hccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAY-TNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~-~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |++.+...+...+++.|++|+++|++++++...+.++|.+++|+++. +.+..|||+.|++.+++.++..+..+..+||.
T Consensus       108 G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        108 AFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999888999999999999999999999999999999999999854 45667999999999988877764555556664


Q ss_pred             chHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 041759          259 PRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIG  338 (525)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (525)
                      |+    + +.++                                        ..+.++++++|.++......++......
T Consensus       188 ~~----~-~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (390)
T PRK03545        188 PS----E-HSGS----------------------------------------LKSLPLLFRRPALVSLYLLTVVVVTAHF  222 (390)
T ss_pred             CC----C-Ccch----------------------------------------HHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            31    0 0000                                        0244567788876655444443333332


Q ss_pred             H-HHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccc
Q 041759          339 V-VYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAG  417 (525)
Q Consensus       339 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (525)
                      . ..+..+++.+..|.+....+.......+    +.+++.++.+++.||+++|... .+..+..++...+......    
T Consensus       223 ~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~----~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~----  293 (390)
T PRK03545        223 TAYSYIEPFVQQVAGLSENFATLLLLLFGG----AGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANS----  293 (390)
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHHHHH----HHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhch----
Confidence            2 2333445445578887777777666666    6779999999999999987644 4444444444333222222    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHH
Q 041759          418 KRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICC  495 (525)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~  495 (525)
                      .....+..++.+++.....+.....+.+..| +.|++++|+.+....+|..++|.+.|.  +..+....+...+++.+++
T Consensus       294 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~  372 (390)
T PRK03545        294 EWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAA  372 (390)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence            2344556666666665555666677778777 578999999999999999999999985  4456777777777777776


Q ss_pred             HHHHHhc
Q 041759          496 GFFVICL  502 (525)
Q Consensus       496 ~~~~~~~  502 (525)
                      .+.....
T Consensus       373 ~~~~~~~  379 (390)
T PRK03545        373 LVWSILI  379 (390)
T ss_pred             HHHHHHH
Confidence            6655443

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=2.2e-33  Score=280.12  Aligned_cols=387  Identities=17%  Similarity=0.130  Sum_probs=261.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCcccc-ceeecc--ccc
Q 041759           34 SLDEIVEQAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTAL-TIISEW--GLE  110 (525)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~-~i~~~~--~~~  110 (525)
                      ......+......++++++.+|....++.                                     .| .+.+++  ++ 
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------------------------------------~~~~~~~~~~~~~-   57 (438)
T PRK09952         16 SLSRARRAALGSFAGAVVDWYDFLLYGIT-------------------------------------AALVFNREFFPQV-   57 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHhcCCCC-
Confidence            34444457888888999999999998887                                     44 344554  45 


Q ss_pred             cchhhhhhhHH-----HHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHH
Q 041759          111 CSSAFIKGLPA-----ASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLW--------IYSLLRF  177 (525)
Q Consensus       111 ~~s~~~~g~~~-----s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~  177 (525)
                        ++. .+++.     ++.+++..+++++.|+++|| +|||++++++.+++++++++++++++++        .++++|+
T Consensus        58 --~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~  133 (438)
T PRK09952         58 --SPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRA  133 (438)
T ss_pred             --CcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence              444 35443     35567788999999999999 9999999999999999999999999987        5889999


Q ss_pred             HHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc---------cCCchHHHHHHHHHHHHHHH
Q 041759          178 FSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN---------RSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       178 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~---------~~~~wr~~f~~~~~~~~~~~  248 (525)
                      ++|++.|...+....++.|++|+++|++..+..+.+..+|.+++..+...+         ..+|||++|++.+++.++..
T Consensus       134 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~  213 (438)
T PRK09952        134 IQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIAL  213 (438)
T ss_pred             HHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987663322         25799999999888776544


Q ss_pred             hHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHH
Q 041759          249 GLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTL  328 (525)
Q Consensus       249 ~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  328 (525)
                       .....+||+|+|...+++.++           . ++                    +    ....+.++++|+.+...+
T Consensus       214 -~l~~~~~es~~~~~~~~~~~~-----------~-~~--------------------~----~~~~~~l~~~~~~~~~~~  256 (438)
T PRK09952        214 -WVRNGMEESAEFEQQQHEQAA-----------A-KK--------------------R----IPVIEALLRHPGAFLKII  256 (438)
T ss_pred             -HHHHhCCCChhHHHHHhhccc-----------c-cc--------------------c----CCHHHHHHHchHHHHHHH
Confidence             555667888765322111000           0 00                    0    011223455555444332


Q ss_pred             HHHH-HHHHHH-HHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHH
Q 041759          329 ALMV-PGFGIG-VVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIM  406 (525)
Q Consensus       329 ~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~  406 (525)
                      ...+ ..+... ...+..++..+..|.+.........+..+    ..+++.++.|+++||+|||+.+..+.++..++.+.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~----~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~  332 (438)
T PRK09952        257 ALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGG----LSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFP  332 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            2221 122222 22233333334567665533222222233    34478889999999999999888777665554433


Q ss_pred             HHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHH-HHHHHHHHHHHhhc---c-Cch
Q 041759          407 AVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAI-IFAAIFSSVLVAAG---S-NNE  481 (525)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~-~~g~~~~p~i~~~~---~-~~~  481 (525)
                      +...... .......+...++.+++.+...+..+++..|.+|++.|+++.++.+... .+|+.++|.+.+..   . .++
T Consensus       333 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~  411 (438)
T PRK09952        333 FFMALEA-QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSW  411 (438)
T ss_pred             HHHHHHc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3222111 0112233344455566667777888899999999999999999977665 48889999998852   1 234


Q ss_pred             hHHHHHHHHHHHHHHHHHHhccC
Q 041759          482 FVSYGVFGLVIICCGFFVICLPE  504 (525)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~  504 (525)
                      ...+...+++.+++.+..+.+++
T Consensus       412 ~~~~~~~~~~~~i~~v~~~~~~~  434 (438)
T PRK09952        412 HSVAIYLLAGCLISAMTALLMKD  434 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHccc
Confidence            45566666666666666666655

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=6.3e-34  Score=289.22  Aligned_cols=390  Identities=22%  Similarity=0.292  Sum_probs=284.8

Q ss_pred             hhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheee
Q 041759          115 FIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLL  194 (525)
Q Consensus       115 ~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i  194 (525)
                      .+.+++.+++.++.+++++++|+++|+ +|||+.++++.+++.++.+++++++|+++++++|+++|+|.|....+.+.|+
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~  167 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYI  167 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhH
Confidence            456999999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHH
Q 041759          195 TEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSS--SWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAV  272 (525)
Q Consensus       195 ~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~--~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~  272 (525)
                      +|..|++.||...+..+....+|..++..+++...+.  +||..+.+..+++++.. +..+++||+|+|+..+++.++++
T Consensus       168 sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~~pesp~~L~~~g~~~~a~  246 (513)
T KOG0254|consen  168 SEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILA-LGMLFLPESPRWLIEKGRLEEAK  246 (513)
T ss_pred             hhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHH-HHHHhCCCChHHHHHcCChHHHH
Confidence            9999999999999999999999999998888887654  89999999999999988 44899999999999999999999


Q ss_pred             HHHHhhCCCcCCccchhhhhhhccCC-CCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHH-----HHHHHhhhhh
Q 041759          273 EVIKSLSPIKDSNQLSLSLVSAVSFG-HEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFG-----IGVVYYGMTL  346 (525)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  346 (525)
                      +.++++.. .++.+...+..+...+. .+....++    ...++++++ |..++.....+.....     .+...|+.+.
T Consensus       247 ~~l~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~  320 (513)
T KOG0254|consen  247 RSLKRLRG-LSPEDVEVELELLKIKLLVEAEVAEG----KASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTT  320 (513)
T ss_pred             HHHHHHhC-CCCcchHHHHHHHHHHHHHhhhcccc----cccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHH
Confidence            99998833 23333333332222110 00000000    012444554 4444444444433332     2334455555


Q ss_pred             cccccCChh--HHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccc--------c
Q 041759          347 GIENLGFDI--YLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISN--------A  416 (525)
Q Consensus       347 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  416 (525)
                      +++..|.+.  .......+...+       ++.+++.++.||+|||++++.+...+.++.+++........        .
T Consensus       321 if~~~g~~~~~~~~~~~~~~v~~-------~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~  393 (513)
T KOG0254|consen  321 IFKSAGLKSDTFLASIILGVVNF-------LGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGA  393 (513)
T ss_pred             HHHhcCCCCchHHHHHHHHHHHH-------HHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccch
Confidence            566666553  455555566555       88888899999999999999999999999888776532210        1


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHH
Q 041759          417 GKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIIC  494 (525)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~  494 (525)
                      .+......++.......+..++.+.+.+|.+|.+.|+.+.++....+++.+.+-......  ...+....|..++.++.+
T Consensus       394 ~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~  473 (513)
T KOG0254|consen  394 GWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLL  473 (513)
T ss_pred             hHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            122222222233333333446788899999999999999999999998877655444332  111124444444444444


Q ss_pred             HHH--HHHhccCCCCCCccchHHHhcc
Q 041759          495 CGF--FVICLPETRGSSLCDTIDQREH  519 (525)
Q Consensus       495 ~~~--~~~~~~~~~~~~~~~~~~~~~~  519 (525)
                      ...  +++++||+|++++++.++..++
T Consensus       474 ~~~~fv~~~~pETkg~sleei~~~~~~  500 (513)
T KOG0254|consen  474 SLIIFVFFFVPETKGLTLEEINELFEE  500 (513)
T ss_pred             HHHHHheEEcccCCCCcHHHHHHHHHc
Confidence            443  5677899999999888775544

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=2.5e-33  Score=280.26  Aligned_cols=355  Identities=17%  Similarity=0.166  Sum_probs=261.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      ....+.++++.+.++.....+.                                     .|.+++++|+   ++.+.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~i~~~~~~---s~~~~~~~   58 (426)
T PRK12307         19 ALFSAWLGYVFDGFDFMLIFYI-------------------------------------MYLIKADLGL---TDMEGAFL   58 (426)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHH-------------------------------------HHHHHHHhCC---CHHHHHHH
Confidence            5677788888999999999888                                     9999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      .+++.+++.+++++.|+++|| +|||+++.++.++.+++.++.+++++++.++++|+++|++.+...+....++.|++|+
T Consensus        59 ~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~  137 (426)
T PRK12307         59 ATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPK  137 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhC
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLS  279 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~  279 (525)
                      ++|+++.++...+..+|.++++.+ +.+....+||+.|++..+..++.. ......||++++...+.         +   
T Consensus       138 ~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~-~~~~~~p~~~~~~~~~~---------~---  204 (426)
T PRK12307        138 HLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVI-YIRARAPESKEWEEAKL---------S---  204 (426)
T ss_pred             hHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH-HHHHHCCCChHHHHhhh---------h---
Confidence            999999999999999999999877 556667899999988655444333 33333455443211000         0   


Q ss_pred             CCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHH---HHHHhhhhhcccccCChhH
Q 041759          280 PIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGI---GVVYYGMTLGIENLGFDIY  356 (525)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  356 (525)
                      . ++++             .+...    ......++++++++.++.............   ......+|.+.++.|.+..
T Consensus       205 ~-~~~~-------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  266 (426)
T PRK12307        205 G-KGKH-------------SQSAW----SVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTG  266 (426)
T ss_pred             c-cccc-------------cccch----hhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            0 0000             00000    000125667888877554333222222111   1233345666667788877


Q ss_pred             HHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHH--HHHH
Q 041759          357 LGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLF--SAYI  434 (525)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  434 (525)
                      ..........+    +.+++.++.+++.||++||+.+..+.++..+..+.+......   .. . .+..++.+.  ....
T Consensus       267 ~~~~~~~~~~~----~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~~~~~~~~~~~~  337 (426)
T PRK12307        267 VVSNLMTAAAF----GTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQD---NY-L-LLGACLFGLMATNVG  337 (426)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccc---cH-H-HHHHHHHHHHHhccc
Confidence            77766666666    677999999999999999999888887776665544433322   12 1 112222222  1122


Q ss_pred             HHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          435 AYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       435 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      ..+....++.|.+|++.|++++|+.+....+|+.++|.+.+.
T Consensus       338 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~  379 (426)
T PRK12307        338 VGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATW  379 (426)
T ss_pred             HhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHH
Confidence            334566778899999999999999999999999999999985

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=1.9e-32  Score=274.85  Aligned_cols=376  Identities=11%  Similarity=0.029  Sum_probs=252.1

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh----hHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN----NLWIYSLL  175 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~  175 (525)
                      .|.+.++ |+   +..+.|++.+++.+++.++++++|+++|| +|||++++++.++.+++.+++++++    +++.+++.
T Consensus        52 ~p~l~~~-g~---s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  126 (452)
T PRK11273         52 MPYLVEQ-GF---SRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL  126 (452)
T ss_pred             hHHHHHc-CC---CHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence            7888888 99   99999999999999999999999999999 9999999999999999999888763    78899999


Q ss_pred             HHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHH-HHHHHH-HhccCCchHHHHHHHHHHHHHHHhHhhe
Q 041759          176 RFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTL-TLPAIA-YTNRSSSWTIIYLWTSIPTLVYSGLLYI  253 (525)
Q Consensus       176 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~  253 (525)
                      |++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .+|+++ ......+||+.|++.+++.++..++..+
T Consensus       127 ~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~  206 (452)
T PRK11273        127 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFA  206 (452)
T ss_pred             HHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888888889999999999999999999999874 466553 2323459999999998888777657777


Q ss_pred             eecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhh-hhhhhcchhHHHHHHHHHH
Q 041759          254 FVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSS-IRELFVRRWALERTLALMV  332 (525)
Q Consensus       254 ~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~  332 (525)
                      ++||+|+....+ +.++.+       + ..+.    +   ..+ .++ +  ++  +.... .+.+++++.++...+..++
T Consensus       207 ~~~~~~~~~~~~-~~~~~~-------~-~~~~----~---~~~-~~~-~--~~--~~~~~~~~~~~~~~~~~~~~l~~~~  264 (452)
T PRK11273        207 MMRDTPQSCGLP-PIEEYK-------N-DYPD----D---YNE-KHE-Q--EL--TAKQIFMQYVLPNKLLWYIAIANVF  264 (452)
T ss_pred             HccCCHhhcCCC-Chhhhh-------h-cccc----c---ccc-ccC-C--Cc--cHHHHHHHHHHcChHHHHHHHHHHH
Confidence            788877531111 111000       0 0000    0   000 000 0  00  00111 2346778877766666555


Q ss_pred             HHHHHHHHHhhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhh--cChhHHH-HHHHHHHHHHHHHH
Q 041759          333 PGFGIGVVYYGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKW--NRKSSLL-VLFIISGICSIMAV  408 (525)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~--g~~~~~~-~~~~~~~~~~~~~~  408 (525)
                      ..........+.|.++++ .|++....+....+..+    +.+++.++.|+++||+  +||.... ....+..++.+++.
T Consensus       265 ~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~----~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~  340 (452)
T PRK11273        265 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY----AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW  340 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHH
Confidence            555444444455666654 67887777666666555    6668999999999999  4444322 22222333333222


Q ss_pred             HhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHH-HHHHHhh--ccCchhHHH
Q 041759          409 VANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIF-SSVLVAA--GSNNEFVSY  485 (525)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~-~p~i~~~--~~~~~~~~~  485 (525)
                      .....   +.....+..+..+............+..|.+|++.||++.|+.+....+|+.+ +|.+.|.  +..++...|
T Consensus       341 ~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f  417 (452)
T PRK11273        341 LNPAG---NPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF  417 (452)
T ss_pred             Hhccc---ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHH
Confidence            22211   12222233333333332323334456779999999999999999988888654 7888874  333567777


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCC
Q 041759          486 GVFGLVIICCGFFVICLPETRGSS  509 (525)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~  509 (525)
                      .+++++++++.+....+...++|+
T Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~  441 (452)
T PRK11273        418 MVMIGGSILAVILLIVVMIGEKRH  441 (452)
T ss_pred             HHHHHHHHHHHHHHHHHhccccch
Confidence            777777777766655444333343

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=9.2e-33  Score=279.90  Aligned_cols=378  Identities=15%  Similarity=0.019  Sum_probs=283.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      .+..++++.++...|.++++.+                                     .|.+.+|+|.   +..+.+|+
T Consensus         7 ~~~~~~~~~~~~~ld~tiv~~a-------------------------------------~p~i~~~l~~---s~~~~~~~   46 (495)
T PRK14995          7 TLVIIVLVYIPVAIDATVLHVA-------------------------------------APTLSMTLGA---SGNELLWI   46 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHhCC---CHhHHHHH
Confidence            6788899999999999999999                                     9999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeee-c
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKV-G  199 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~  199 (525)
                      .+.|.++..++++++|+++|| +|||++++++.++++++++++++++|++.++++|+++|+|.+...+.....+.+.+ |
T Consensus        47 ~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~  125 (495)
T PRK14995         47 IDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTE  125 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999 99999999999999999999999999999999999999999998888887776665 6


Q ss_pred             CcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHH---
Q 041759          200 TEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVI---  275 (525)
Q Consensus       200 ~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~---  275 (525)
                      +++|+++++++.....+|.++||.+ +.+.+..+|||.|++...+.++..++..+++||.++..  +++.+......   
T Consensus       126 ~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~  203 (495)
T PRK14995        126 EKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIV  203 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHH
Confidence            7999999999999999999999999 55557789999999998888777756667778765311  11111110000   


Q ss_pred             ------HhhCCC-cCCccchhhhh-----------hhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHH
Q 041759          276 ------KSLSPI-KDSNQLSLSLV-----------SAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGI  337 (525)
Q Consensus       276 ------~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  337 (525)
                            ...... .+.........           ....+...     +  ++ .-..+++++|.+....+..+......
T Consensus       204 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~-----~--~p-~~~~~lf~~~~~~~~~~~~~~~~~~~  275 (495)
T PRK14995        204 AILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAA-----S--RP-MIDMRLFTHRIILSGVVMAMTAMITL  275 (495)
T ss_pred             HHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcC-----C--CC-CcCHHHhCCcccHHHHHHHHHHHHHH
Confidence                  000000 00000000000           00000000     0  00 11246788887665555555544444


Q ss_pred             HHHHhhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcccccc
Q 041759          338 GVVYYGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNA  416 (525)
Q Consensus       338 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (525)
                      ....+..|.+++. .|.++.+++.......+    +..++.++.|++.||+|+|+.+..+..+.+++.+++......  .
T Consensus       276 ~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~----~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~--~  349 (495)
T PRK14995        276 VGFELLMAQELQFVHGLSPLEAGMFMLPVMV----ASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFS--T  349 (495)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCC--C
Confidence            4444455655554 78898888888776666    777899999999999999999888888877777665544322  1


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 041759          417 GKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~  475 (525)
                      +........++.+++.+...+.....+.+..|++.++.+.++.+....+|+.+|+.+.+
T Consensus       350 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g  408 (495)
T PRK14995        350 QQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFG  408 (495)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            23344556777888888888888888889999999999999999999999998887776

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=4.1e-33  Score=274.22  Aligned_cols=346  Identities=12%  Similarity=0.049  Sum_probs=261.3

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      .|.+++++|+   +..+.|++.+++.++..+++++.|+++|| +|||+++.++.++.+++.+++++++|++.++++|++.
T Consensus        26 ~~~~~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (377)
T TIGR00890        26 APPLGRYFGV---GVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLA  101 (377)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHH-HHHHHhccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTL-PAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~-~~l~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |++.+...+.....+.+++| ++|+++.++...+.++|.+++ |+.+.+....+||+.|++.+++.++..+..+++++|+
T Consensus       102 g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  180 (377)
T TIGR00890       102 SAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYP  180 (377)
T ss_pred             hHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecC
Confidence            99999888888888888886 579999999999999998874 4557777778999999999998888775666666654


Q ss_pred             chHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 041759          259 PRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIG  338 (525)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (525)
                      |+.   +.+            + +++.             ++    +     ....++.++++.++...+..+.......
T Consensus       181 ~~~---~~~------------~-~~~~-------------~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (377)
T TIGR00890       181 PGQ---LIK------------T-NIEV-------------SV----K-----DYTVWEMLRTPQFWVLYLSFFLNAVSGL  222 (377)
T ss_pred             chh---ccc------------c-Cccc-------------ch----h-----hhhHHHHHcCccHHHHHHHHHHHhHHHH
Confidence            320   000            0 0000             00    0     0234567777775554443333333222


Q ss_pred             HHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccch
Q 041759          339 VVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGK  418 (525)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (525)
                      ......+.+.++.+.+............+    +.+++.++.+++.||++||+.+.++..+..++.+++...+..   ..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~  295 (377)
T TIGR00890       223 LLIGLYKPYGQSLGLSDGFLVLAVSISSI----FNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPML---ND  295 (377)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccc---hh
Confidence            22222344456677777666666666666    677999999999999999999998888888877766554432   11


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHH
Q 041759          419 RMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICC  495 (525)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~  495 (525)
                      .......++.+++.+...+....+..|.+|+++|+++.|+.+....+|..++|.+.|.  +..++...+.+.+++.+++
T Consensus       296 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       296 VLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            2233344555666666666777889999999999999999999999999999999985  3345666666666655544

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=7.4e-33  Score=274.36  Aligned_cols=371  Identities=15%  Similarity=0.148  Sum_probs=264.0

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      .|.+++++|+   +..+.|++.+++.++..+++++.|+++|| +|||+++.++.++.+++.++.++++|++.++++|++.
T Consensus        17 ~~~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   92 (399)
T TIGR00893        17 APMLQEDLGL---SAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLL   92 (399)
T ss_pred             HHHHHHhhCC---ChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            8899999999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |++.+...+....++.|++|+++|++++++.+....+|.++++.+ +.+....+||+.|++.+++.++..++..++.||+
T Consensus        93 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (399)
T TIGR00893        93 GAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDP  172 (399)
T ss_pred             HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCC
Confidence            999999999999999999999999999999999999999999988 4556778999999999888887775666677776


Q ss_pred             chHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 041759          259 PRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIG  338 (525)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (525)
                      |+... ..++++.....++. + .          +.  +.++.++..     ....++.+++|+++...+..+.......
T Consensus       173 ~~~~~-~~~~~~~~~~~~~~-~-~----------~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (399)
T TIGR00893       173 PQKAK-WLTEEEKYIVVGGL-L-A----------EQ--QGKGPSTPK-----KYQIKELLKDRRVWGLALGQFLVNIGLG  232 (399)
T ss_pred             CCccc-cCCHHHHhhcchhh-c-c----------cc--ccccccCCC-----ccchHHHhcCHHHHHHHHHHHHHHhHHH
Confidence            53110 00111100000000 0 0          00  000000001     1356778888887666666555555555


Q ss_pred             HHHhhhhhcc-cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChh--HHHHHHHH--HHHHHHHHHHhccc
Q 041759          339 VVYYGMTLGI-ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKS--SLLVLFII--SGICSIMAVVANDI  413 (525)
Q Consensus       339 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~--~~~~~~~~--~~~~~~~~~~~~~~  413 (525)
                      ......+.+. +..+.+....+.......+    +.+++.++.+++.||++||+  ........  ..+...+.......
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (399)
T TIGR00893       233 FFLTWFPTYLVQERGLSILEAGFMASLPGI----VGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY  308 (399)
T ss_pred             HHHHHHHHHHHHHhcccHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Confidence            5444555555 4477777777777666666    66689999999999999886  11111111  11111111111111


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc--cCc-hhHHHHHHHH
Q 041759          414 SNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG--SNN-EFVSYGVFGL  490 (525)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~--~~~-~~~~~~~~~~  490 (525)
                       ............+..++.+ ..+....+..|.+|++.|+++.|+.+....+|..++|.+.|..  ..+ +...+.+.++
T Consensus       309 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~  386 (399)
T TIGR00893       309 -VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAA  386 (399)
T ss_pred             -chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHH
Confidence             0112223333333333333 6788899999999999999999999999999999999999852  234 5666666666


Q ss_pred             HHHHHHHHHH
Q 041759          491 VIICCGFFVI  500 (525)
Q Consensus       491 ~~~~~~~~~~  500 (525)
                      +.+++.+..+
T Consensus       387 ~~~~~~~~~~  396 (399)
T TIGR00893       387 LALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHH
Confidence            6666555443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=1.9e-32  Score=269.67  Aligned_cols=350  Identities=11%  Similarity=0.041  Sum_probs=256.1

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      +|.+++|+|+   |..+.|++.+.+.+++.+++++.|+++|| +|||+++..+..+++++.+++++++|++.++++|+++
T Consensus        32 lp~i~~~~~~---s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~  107 (393)
T PRK09705         32 LPQLRQASGM---SFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELYPQSALLLSSALLG  107 (393)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHH
Confidence            8999999999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHh-ccC-CchHHHHHHHHHHHHHHHhHhheeec-
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYT-NRS-SSWTIIYLWTSIPTLVYSGLLYIFVS-  256 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~-~~~-~~wr~~f~~~~~~~~~~~~~~~~~lp-  256 (525)
                      |++.+...+....++.+++| ++|+++++++..+...|..+++.++.. .+. .+||+.+.+.++..++.. +.++... 
T Consensus       108 Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~  185 (393)
T PRK09705        108 GVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL-FAWWWQSA  185 (393)
T ss_pred             HhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence            99999999998999999987 789999999999999999998888543 443 389998877666655443 3222221 


Q ss_pred             CCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHH
Q 041759          257 ESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFG  336 (525)
Q Consensus       257 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  336 (525)
                      +.|+                     .+++             ++           ...++.+++++.+...+..++....
T Consensus       186 ~~~~---------------------~~~~-------------~~-----------~~~~~~l~~~~~~~l~~~~~~~~~~  220 (393)
T PRK09705        186 REVA---------------------SSHK-------------TT-----------TTPVRVVFTPRAWTLGVYFGLINGG  220 (393)
T ss_pred             CCCc---------------------cccC-------------CC-----------cCCcccccCHhHHHHHHHHHHHHHH
Confidence            1110                     0000             00           0112334555544444433333333


Q ss_pred             HHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcccccc
Q 041759          337 IGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNA  416 (525)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (525)
                      ........|.++++.|.+....+...++..+    +.+++.++.+++.||++||+....+..+..++.+++...+..   
T Consensus       221 ~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i----~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~---  293 (393)
T PRK09705        221 YASLIAWLPAFYIEIGASAQYSGSLLALMTL----GQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQ---  293 (393)
T ss_pred             HHHHHHHHHHHHHHcCCChhhhhHHHHHHHH----HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccch---
Confidence            3334444455566688888888888877777    888999999999999999999888887777776655443332   


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhcccc-CcchhhhhhHHHHHHHHHHHHHHHHHHhhc--c-CchhHHHHHHHHHH
Q 041759          417 GKRMRIGLELASLFSAYIAYTVIFIYAIELF-PTCVRNSATSIMRLAIIFAAIFSSVLVAAG--S-NNEFVSYGVFGLVI  492 (525)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~--~-~~~~~~~~~~~~~~  492 (525)
                      .. .  ...++.+++.+..++.......+.. |++.+++..|+.+....+++.++|.+.|+.  . .++...+.+.++++
T Consensus       294 ~~-~--~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~  370 (393)
T PRK09705        294 LP-V--LWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCV  370 (393)
T ss_pred             HH-H--HHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence            11 1  1233455666666676666666666 467889999999999999999999999852  1 23556666666655


Q ss_pred             HHHHHH-HHhccCCCCCCc
Q 041759          493 ICCGFF-VICLPETRGSSL  510 (525)
Q Consensus       493 ~~~~~~-~~~~~~~~~~~~  510 (525)
                      ++..+. ..+.||++.|.+
T Consensus       371 ~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        371 VGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHHHHHHHhccccccchh
Confidence            555444 345577766543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=7.3e-39  Score=322.53  Aligned_cols=385  Identities=25%  Similarity=0.399  Sum_probs=279.9

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHhhcccchhhh
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN---NLWIYSLLRFFSGISRATIGTC  189 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~  189 (525)
                      +..+.+++.+...+|..+|+++.|+++|| +|||+.++++.++..+++++.++++   |++.++++|++.|++.|...+.
T Consensus        44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~  122 (451)
T PF00083_consen   44 SSLLSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVV  122 (451)
T ss_pred             hHHHHHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45678999999999999999999999999 9999999999999999999999999   9999999999999999999999


Q ss_pred             hheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhcc----CCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhc
Q 041759          190 TIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNR----SSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQ  265 (525)
Q Consensus       190 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~----~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~  265 (525)
                      ...++.|..|+++|++..++.+.+..+|.+++..++....    +.+||+.+.+.++++++.. +...++||||+|+..+
T Consensus       123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~-~~~~~~pESP~wL~~~  201 (451)
T PF00083_consen  123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVL-LLRFFLPESPRWLLSK  201 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccceeccc
Confidence            9999999999999999999999999999999988865442    2469999999999998877 7778999999999999


Q ss_pred             CCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHH-----HHH
Q 041759          266 GRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGI-----GVV  340 (525)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~  340 (525)
                      +|.+++++.+++..+ .  +..+++..+..++.++.++++      ..++++++++..++..+..+......     ...
T Consensus       202 ~~~~~A~~~l~~~~~-~--~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~  272 (451)
T PF00083_consen  202 GRDEEAEKVLRKLRG-K--EIEDEEIEEIKAEKKESQESK------ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFI  272 (451)
T ss_pred             ccccccccccccccc-c--ccccccccccccccccccccc------eeeeeccccccccccccccccccccccccccccc
Confidence            999999888877522 2  111111111111111111100      35667777755333444333333222     234


Q ss_pred             HhhhhhcccccCChhH-HHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHH--Hhcccccc-
Q 041759          341 YYGMTLGIENLGFDIY-LGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAV--VANDISNA-  416 (525)
Q Consensus       341 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-  416 (525)
                      .++.+.+.++.+.+.. ......++       ..+++.+++.++.||+|||++++.+..+++++.+.+.  ........ 
T Consensus       273 ~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  345 (451)
T PF00083_consen  273 FYYSPSIFENAGISNSFLATLILGL-------VNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSS  345 (451)
T ss_pred             ccccccccccccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4455666666666655 22222222       3447777778999999999999999888888877664  11111010 


Q ss_pred             --chhHHHHHHHHHHHHHH-HHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhcc--CchhHHHHHHHHH
Q 041759          417 --GKRMRIGLELASLFSAY-IAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGS--NNEFVSYGVFGLV  491 (525)
Q Consensus       417 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~~--~~~~~~~~~~~~~  491 (525)
                        .. ..+.+..+.....+ +..+..+.+..|.+|++.|+++.++....++++++++|.+.....  .+....+.+++++
T Consensus       346 ~~~~-~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~  424 (451)
T PF00083_consen  346 WWSI-LSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGV  424 (451)
T ss_pred             cccc-ccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHH
Confidence              12 22222222222222 344677789999999999999999999999999999888876422  2235566666666


Q ss_pred             HHHHHH-HHHhccCCCCCCccchHHH
Q 041759          492 IICCGF-FVICLPETRGSSLCDTIDQ  516 (525)
Q Consensus       492 ~~~~~~-~~~~~~~~~~~~~~~~~~~  516 (525)
                      +++..+ .++++||||+++++|.+++
T Consensus       425 ~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  425 CLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             HHHHHhheeEEEeeCCCCCHHHHHhh
Confidence            555554 4577899999999887654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=4e-32  Score=274.20  Aligned_cols=415  Identities=15%  Similarity=0.112  Sum_probs=277.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      +..++++++..+..|+.+.+.+..     |..+.++.+ +..|..       ..+|.  ......|+++   +..+.|++
T Consensus        20 i~~~~~~~~~~~y~dr~~~~~a~~-----~~~~~~~~~-~~~~~~-------~~~~~--~~~~~~~~~~---s~~~~g~~   81 (465)
T TIGR00894        20 LSFLLHICNVIIIAQRICLSLTMV-----AMVNKENST-DLACLS-------AENEL--DNIKNPNFKW---SGALQGLI   81 (465)
T ss_pred             HHHHHHHHHHHHHHHHhhheEEEE-----EcccCCCCC-Cccccc-------ccccc--ccccCCCCCC---CHHHhhHH
Confidence            677788888889999999888721     111100000 011110       00111  2233448899   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhhcccchhhhhheeeEeee
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS--NNLWIYSLLRFFSGISRATIGTCTIVLLTEKV  198 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  198 (525)
                      .+.+.+++.+++++.|+++|| +|||+++.++.++++++.+++.++  .+++.+++.|+++|++.+...+....++.|++
T Consensus        82 ~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~  160 (465)
T TIGR00894        82 LSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWA  160 (465)
T ss_pred             HHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcC
Confidence            999999999999999999999 999999999999999998887554  56889999999999999999999999999999


Q ss_pred             cCcchhhHHhHHHHHHHHHHHHHHHH-HHhccC-CchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHH
Q 041759          199 GTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRS-SSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIK  276 (525)
Q Consensus       199 ~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~  276 (525)
                      |+++|++++++...+..+|.++++++ +.+... .+||+.|++.+++.++..++.+.+.+|+|+... +.++++. +..+
T Consensus       161 ~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~-~~i~  238 (465)
T TIGR00894       161 PPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CISKFEK-KYIN  238 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCCHHHH-HHHH
Confidence            99999999999999999999999988 555556 499999999999888877555556677764211 0011111 0000


Q ss_pred             hhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCChh
Q 041759          277 SLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGI-ENLGFDI  355 (525)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  355 (525)
                      +.                 .+.++.+++.     ...++++++++.++...+..+...........++|.++ +.+|.+.
T Consensus       239 ~~-----------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~  296 (465)
T TIGR00894       239 SS-----------------LQGQKGSTRQ-----SLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSG  296 (465)
T ss_pred             hh-----------------cccccCCCCC-----CCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCh
Confidence            00                 0000000000     13578889998877766666555555544444455555 4578888


Q ss_pred             HHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHH--------HHHHHHHHHHHHHHHHhccccccchhHHHHHHHH
Q 041759          356 YLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSL--------LVLFIISGICSIMAVVANDISNAGKRMRIGLELA  427 (525)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (525)
                      ...+...++..+    +.+++.++.|++.||+++|+..        ..+.........++......  .+....+++..+
T Consensus       297 ~~~g~~~~~~~~----~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l  370 (465)
T TIGR00894       297 KENGLLSSLPYL----FAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS--AAFYLTIIILTL  370 (465)
T ss_pred             HHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHH
Confidence            888888777666    7779999999999997644211        11111111111111111111  112233334444


Q ss_pred             HHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhcc-----CchhHHHHHHHHHHHHHHHHHHhc
Q 041759          428 SLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGS-----NNEFVSYGVFGLVIICCGFFVICL  502 (525)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  502 (525)
                      .+.+.+...+.......|..|+ .+|.+.++.+..+.+|++++|.+.|...     ..+...|.+.+++.+++.++....
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       371 ANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             HHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            4444444455555566677776 7899999999999999999999998521     124566677777777766655544


Q ss_pred             cCC
Q 041759          503 PET  505 (525)
Q Consensus       503 ~~~  505 (525)
                      .+.
T Consensus       450 ~~~  452 (465)
T TIGR00894       450 GSA  452 (465)
T ss_pred             ecc
Confidence            433

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=1.7e-31  Score=266.81  Aligned_cols=348  Identities=14%  Similarity=0.097  Sum_probs=236.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      ....++++++++.+|..++++.                                     .|.+++|++.   ++.+.+.+
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~-------------------------------------~~~i~~~~~~---~~~~~~~~   55 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFY-------------------------------------ATAIAKTFFP---AGNEFASL   55 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHhCC---CCCchHHH
Confidence            5778888999999999999999                                     9999999998   77665543


Q ss_pred             -HHHH-----HHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhcccch
Q 041759          121 -AASH-----FTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLW--------IYSLLRFFSGISRATI  186 (525)
Q Consensus       121 -~s~~-----~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~  186 (525)
                       .+..     .++..+++++.|+++|| +|||+.++.+.+++++++++++++++++        .++++|+++|++.+..
T Consensus        56 ~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~  134 (434)
T PRK15075         56 MLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVE  134 (434)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhcccccc
Confidence             3332     22334789999999999 9999999999999999999999999987        4689999999999999


Q ss_pred             hhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc---------cCCchHHHHHHHHHHHHHHHhHhheeecC
Q 041759          187 GTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN---------RSSSWTIIYLWTSIPTLVYSGLLYIFVSE  257 (525)
Q Consensus       187 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~---------~~~~wr~~f~~~~~~~~~~~~~~~~~lpe  257 (525)
                      .+....+++|++|+++|++++++...+.++|..+++.++..+         ..+|||++|++..+...+.. ......||
T Consensus       135 ~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~~~e  213 (434)
T PRK15075        135 LGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIF-LIRRSLEE  213 (434)
T ss_pred             HHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH-HHHHhcCC
Confidence            999999999999999999999999988888888777765442         46799999997654432222 22223333


Q ss_pred             CchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHH-HHHHHHH
Q 041759          258 SPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLA-LMVPGFG  336 (525)
Q Consensus       258 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~  336 (525)
                      ++++..         +    . + +.                +    .+     ..++...++++.+..... .+.....
T Consensus       214 ~~~~~~---------~----~-~-~~----------------~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (434)
T PRK15075        214 TEEFLA---------R----K-H-RP----------------S----MR-----EIFRSLAANWRIVLAGMLMVAMTTVS  253 (434)
T ss_pred             CHHHHH---------h----h-h-cc----------------c----cc-----cHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            321100         0    0 0 00                0    00     123333334332222111 1112222


Q ss_pred             HHHHHhhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHH-HHHHhcccc
Q 041759          337 IGVVYYGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSI-MAVVANDIS  414 (525)
Q Consensus       337 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~  414 (525)
                      .....+..|.++++ .|.+..+.........+    +.+++.++.|++.||+|||+.+..+..+..+... .+...... 
T Consensus       254 ~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-  328 (434)
T PRK15075        254 FYLITVYTPTFGKTVLHLSAADSLLVTLCVGV----SNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA-  328 (434)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence            33334445665554 78887766666555555    6668999999999999999988776555433222 11121111 


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHH-HHHHHHHHHHhh
Q 041759          415 NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAII-FAAIFSSVLVAA  476 (525)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~-~g~~~~p~i~~~  476 (525)
                       .+........++.+++.+...+..+.+..|.+|++.|+++.++.+.... +++.++|.+.+.
T Consensus       329 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~  390 (434)
T PRK15075        329 -PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTW  390 (434)
T ss_pred             -CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHH
Confidence             1122222333444455566666677888999999999999999766554 457788988874

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=8.4e-32  Score=267.64  Aligned_cols=369  Identities=12%  Similarity=0.087  Sum_probs=262.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhh
Q 041759           40 EQAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGL  119 (525)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~  119 (525)
                      +.+..+.++++.+.++....+..                                     .|.+++++|+   +..+.|+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~l~~~~~~---s~~~~g~   51 (405)
T TIGR00891        12 NAFSAAWLGWLLDAFDFFLVALV-------------------------------------LAEVAGEFGL---TTVDAAS   51 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHhCC---ChhhHHH
Confidence            35778888999999999999999                                     9999999999   9999999


Q ss_pred             HHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeec
Q 041759          120 PAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVG  199 (525)
Q Consensus       120 ~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~  199 (525)
                      +.+++.++..+++++.|+++|| +|||++++++.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|
T Consensus        52 ~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~  130 (405)
T TIGR00891        52 LISAALISRWFGALMFGLWGDR-YGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWP  130 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCC
Confidence            9999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhHHhHHHHHHHHHHHHHHHHHH-hccCCc--hHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHH
Q 041759          200 TEWRGLVGILDSFFFTIGTLTLPAIAY-TNRSSS--WTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIK  276 (525)
Q Consensus       200 ~~~r~~~~~~~~~~~~~G~~l~~~l~~-~~~~~~--wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~  276 (525)
                      +++|+++.++.+.+..+|.++++.++. +....+  ||+.|++.+++.++.. +....+||++++...+++.++.++..+
T Consensus       131 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (405)
T TIGR00891       131 KHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALVRTMVD  209 (405)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhhhhHHH
Confidence            999999999999999999999998844 444344  9999998777666655 556677887654322211111111111


Q ss_pred             hhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchh--HHHHHHHHHHHHHHHHHHHhhhh-hcccccCC
Q 041759          277 SLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRW--ALERTLALMVPGFGIGVVYYGMT-LGIENLGF  353 (525)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  353 (525)
                      +..+  ++ +..    +      ...++.     ....++..+++.  +........+............| ++.++.|.
T Consensus       210 ~~~~--~~-~~~----~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  271 (405)
T TIGR00891       210 ILYG--GE-HRI----A------NIVMTL-----AAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGL  271 (405)
T ss_pred             HHhc--cc-hhh----h------hhhhhh-----hHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCC
Confidence            1100  00 000    0      000000     001111111111  00111111111111112222233 33445788


Q ss_pred             hhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Q 041759          354 DIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAY  433 (525)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (525)
                      +..+.+.+.+...+    +.+++.++.+++.||++||+.+.++..+..+...........    .....+..++.+++..
T Consensus       272 s~~~~~~~~~~~~~----~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  343 (405)
T TIGR00891       272 SPHTVANIVVFSNI----GAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGAN----VAVLGLGLFFQQMLVQ  343 (405)
T ss_pred             CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHHHc
Confidence            88887777777666    777999999999999999998888776654433332222222    2233344345555555


Q ss_pred             HHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          434 IAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       434 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      ..++....++.|.+|++.|++++|+.+....+|..++|.+.|.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~  386 (405)
T TIGR00891       344 GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGAL  386 (405)
T ss_pred             cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            6667778889999999999999999999999999999999985

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=7e-32  Score=267.52  Aligned_cols=375  Identities=20%  Similarity=0.263  Sum_probs=272.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      .+....+..+..+++.....+.                                     .|.+.+++|.   +..+.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~---~~~~~~~~   57 (398)
T TIGR00895        18 AIILSFLIMLMDGYDLAAMGFA-------------------------------------APAISAEWGL---DPVQLGFL   57 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh-------------------------------------HHHHhhccCC---CHHHHHHH
Confidence            4555666677777777777777                                     8999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      .+.+.++..+++++.|+++|| +|||+++..+.++.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+
T Consensus        58 ~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  136 (398)
T TIGR00895        58 FSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK  136 (398)
T ss_pred             HHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCH
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhC
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLS  279 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~  279 (525)
                      ++|++++++...+..+|..+++.+ +.+....+||+.|++.++..++..++...++||++++...+ +.++..+..++..
T Consensus       137 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  215 (398)
T TIGR00895       137 RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIA  215 (398)
T ss_pred             HhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHH
Confidence            999999999999999999999988 56667789999999987666666656777889988765433 3333222222221


Q ss_pred             CCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHH---HHHHHHHHHHHHHHhhhhhcccccCChhH
Q 041759          280 PIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERT---LALMVPGFGIGVVYYGMTLGIENLGFDIY  356 (525)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (525)
                      . ....+...   +..+   +.++++   ......+.+++++..+...   ...++............|++.++.+.+..
T Consensus       216 ~-~~~~~~~~---~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  285 (398)
T TIGR00895       216 P-QMQAEAQS---ALPE---QKATQG---TKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLS  285 (398)
T ss_pred             H-hccccccc---cccc---cccccc---hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            1 11000000   0000   000000   0011222333333222211   11112222223333445666777888887


Q ss_pred             HHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHH
Q 041759          357 LGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAY  436 (525)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (525)
                      ..+.......+    +.+++.++.+++.||+++|+.. .+..+..+...++......    ........++.+++.+...
T Consensus       286 ~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~  356 (398)
T TIGR00895       286 LAATGGALFNF----GGVIGSIIFGWLADRLGPRVTA-LLLLLGAVFAVLVGSTLFS----PTLLLLLGAIAGFFVNGGQ  356 (398)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHHHHHHhhC----HHHHHHHHHHHHHHHHHHH
Confidence            77777777666    7779999999999999998444 3334444433333332222    2345666777888888888


Q ss_pred             HHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          437 TVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       437 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      +...++..|.+|++.|+++.|+.+....+|..++|.+.|.
T Consensus       357 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       357 SGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            9999999999999999999999999999999999999874

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=1.1e-30  Score=257.11  Aligned_cols=336  Identities=11%  Similarity=0.078  Sum_probs=249.6

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      +|++.+++|+   ++.+.|+..+++.++..+++++.|+++|| +|||++++.+.++.+++.++++++++++.+++.|+++
T Consensus        43 l~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  118 (394)
T PRK10213         43 LTPMAQDLGI---SEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACL  118 (394)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence            7889999999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |++.+...+...+++.|++|+++|+++.++...+.++|.+++|.++ .+.+.++||+.|++.+++.++..+.....+||+
T Consensus       119 G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        119 GLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             HHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            9999999999999999999999999999999999999999999995 455667999999998887776553444445664


Q ss_pred             chHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 041759          259 PRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIG  338 (525)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (525)
                      |+.     + ++                                  .     ....++.+++|.++...+..+.......
T Consensus       199 ~~~-----~-~~----------------------------------~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~  233 (394)
T PRK10213        199 PGE-----P-SH----------------------------------Q-----KQNTFRLLQRPGVMAGMIAIFMSFAGQF  233 (394)
T ss_pred             Ccc-----c-cc----------------------------------c-----hhHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            310     0 00                                  0     0134467778876665444333333332


Q ss_pred             -HHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccc
Q 041759          339 -VVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAG  417 (525)
Q Consensus       339 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (525)
                       ...+..|.+.+++|.+....+.......+    +.+++.++.+++.||.+ |+.+..+..+.....+++......    
T Consensus       234 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~----~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~----  304 (394)
T PRK10213        234 AFFTYIRPVYMNLAGFGVDGLTLVLLSFGI----ASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSD----  304 (394)
T ss_pred             HHHHHHHHHHHHhcCCChhHHHHHHHHHHH----HHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhh----
Confidence             22344577777788888777776666666    67789999999999954 444444434333332232222222    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHH
Q 041759          418 KRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIIC  494 (525)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~  494 (525)
                      .+......++.+++.+...+...+++.+..|+ .++...+.......+|..++|.+.|.  +..+....+...+++.++
T Consensus       305 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~  382 (394)
T PRK10213        305 KIVATGVAIIWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL  382 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence            23455566777788887778888788888874 45677777777888999999999995  333444455554444333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=5e-31  Score=261.19  Aligned_cols=347  Identities=16%  Similarity=0.134  Sum_probs=247.4

Q ss_pred             ccc-eeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh--------hhHH
Q 041759          100 ALT-IISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS--------NNLW  170 (525)
Q Consensus       100 ~~~-i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~--------~~~~  170 (525)
                      +|. +++++|+   +..+.|++.+++.+++.+++++.|+++|| +|||++++.+.++.+++.+.+.++        .+++
T Consensus        38 l~~~i~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (399)
T PRK05122         38 LPGYVHDQLGF---SAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLL  113 (399)
T ss_pred             HHHHHHHhcCc---cHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHH
Confidence            665 6789999   99999999999999999999999999999 999999999999988877766543        2577


Q ss_pred             HHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHHHh
Q 041759          171 IYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNRSSSWTIIYLWTSIPTLVYSG  249 (525)
Q Consensus       171 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~  249 (525)
                      .+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.++ .+....|||+.+++.++..++.. 
T Consensus       114 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~-  192 (399)
T PRK05122        114 LLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGL-  192 (399)
T ss_pred             HHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-
Confidence            8999999999999999999999999999999999999999999999999999984 55677899999888777665544 


Q ss_pred             HhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHH
Q 041759          250 LLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLA  329 (525)
Q Consensus       250 ~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  329 (525)
                      +.....|+++.     ++.+                                    +     .++++.+++  .+.....
T Consensus       193 ~~~~~~~~~~~-----~~~~------------------------------------~-----~~~~~~~~~--~~~~~~~  224 (399)
T PRK05122        193 LLARPRPAVPP-----VKGE------------------------------------R-----LPFRRVLGR--VWPYGMG  224 (399)
T ss_pred             HHHhcCCCCCC-----CCcc------------------------------------c-----hhHHHHHHH--HHHHHHH
Confidence            33322232210     0000                                    0     011222221  1111111


Q ss_pred             HHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHH
Q 041759          330 LMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVV  409 (525)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~  409 (525)
                      ..+............+.+..+.+.+  ..........+    +.+++.++.+++.||+++|+.+..+..+..++.+++..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~  298 (399)
T PRK05122        225 LALASIGFGTIATFITLYYAARGWD--GAALALTLFGV----AFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWL  298 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccc--cchHHHHHHHH----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            1122222222222334444444442  22223333333    55588899999999999999988888877777766655


Q ss_pred             hccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHH
Q 041759          410 ANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGV  487 (525)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~  487 (525)
                      ..+.     ...++..++.+++.+..++.......|..|++.|+++.++.+....+|..++|.+.|.  ...++...+.+
T Consensus       299 ~~~~-----~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  373 (399)
T PRK05122        299 APSP-----WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLA  373 (399)
T ss_pred             hccH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            4332     3455566777777777777777778889999999999999999999999888888874  33456777777


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCc
Q 041759          488 FGLVIICCGFFVICLPETRGSSL  510 (525)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~  510 (525)
                      .+++.+++.++.++++++++++.
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~  396 (399)
T PRK05122        374 AALAALLGLALTWLLYRRAPRAV  396 (399)
T ss_pred             HHHHHHHHHHHHHHhcccccccC
Confidence            77777777766666655554443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.5e-34  Score=262.82  Aligned_cols=423  Identities=19%  Similarity=0.235  Sum_probs=300.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeecc--------ccccc
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEW--------GLECS  112 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~--------~~~~~  112 (525)
                      .+.+...+.++|++|.++++.+                                     .|-+...+        ++   
T Consensus        42 ~i~iAG~GfftDsYDlF~I~lV-------------------------------------t~il~~lY~~~~~~~g~~---   81 (538)
T KOG0252|consen   42 AIIIAGMGFFTDSYDLFSISLV-------------------------------------TKILGYLYYHGDESGGHY---   81 (538)
T ss_pred             HHHHhhhhhcccchhhhhHHHH-------------------------------------HHHHHHHhcCCCCCCCcC---
Confidence            6788889999999999998887                                     33332222        23   


Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHhhcccc
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN-------NLWIYSLLRFFSGISRAT  185 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~~~  185 (525)
                      ++...+.+..+..+|..+||++.|+++|| +|||+++...+++..+++++++++.       -.+++.+.|++.|+|.|+
T Consensus        82 ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG  160 (538)
T KOG0252|consen   82 PSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG  160 (538)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence            56778899999999999999999999999 9999999999999999999888753       267899999999999999


Q ss_pred             hhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhcc----------------CCchHHHHHHHHHHHHHHHh
Q 041759          186 IGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNR----------------SSSWTIIYLWTSIPTLVYSG  249 (525)
Q Consensus       186 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~----------------~~~wr~~f~~~~~~~~~~~~  249 (525)
                      -+|.+.+..+|...+++||...+..-+..+.|.+.|.+++.++.                +.-||..+.+.++++++.+ 
T Consensus       161 DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l-  239 (538)
T KOG0252|consen  161 DYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL-  239 (538)
T ss_pred             CCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH-
Confidence            99999999999999999999999888888888887776654431                1349999999999999988 


Q ss_pred             HhheeecCCchHhhhcC-CHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHH
Q 041759          250 LLYIFVSESPRWLFMQG-RQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTL  328 (525)
Q Consensus       250 ~~~~~lpesp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  328 (525)
                      ...+.+|||+++-.... +.+.+.   .+.     +++.+......++.   ....+.+......+...+..+ .-+.++
T Consensus       240 y~Rl~M~Et~~Y~al~~~~~~~a~---~d~-----~k~~~~~~~~~~~~---~~~~~~~~~~~~~F~~~f~~~-hg~~Ll  307 (538)
T KOG0252|consen  240 YFRLKMPETARYTALVSKKLKQAA---GDM-----KKVLSVDIEAESTA---ESDVPPPSNSFGLFSRLFLRW-HGKHLL  307 (538)
T ss_pred             HhhhcCCcchhHHHHhhcCHhhhh---hcc-----ccccccccchhhcc---ccCCCCcccccchHHHHHHHH-HHHHHH
Confidence            88899999998753222 222222   111     11111100000000   000011111112344444444 346778


Q ss_pred             HHHHHHHHHHHHHhhhhhccc----ccCChhHHHHH----HHHHh-cccccccCchhHHHHHHHHHhhcChhHHHHHHHH
Q 041759          329 ALMVPGFGIGVVYYGMTLGIE----NLGFDIYLGVV----FNALL-EIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFII  399 (525)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~  399 (525)
                      .....|+.....+|...++..    .+|..+.....    ..+.. .+....+.++|..+...++|++|||+..+.++.+
T Consensus       308 gt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~  387 (538)
T KOG0252|consen  308 GTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFI  387 (538)
T ss_pred             HHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHH
Confidence            888888888877777655443    23332211111    11111 1111125557888999999999999999999999


Q ss_pred             HHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc--
Q 041759          400 SGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG--  477 (525)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~--  477 (525)
                      +.+..+.+....+.........+...+...++..+.......+.+|.+|.+.|+++.|+....+-.|++++.......  
T Consensus       388 ~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~  467 (538)
T KOG0252|consen  388 MTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTD  467 (538)
T ss_pred             HHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhh
Confidence            999999888776631111112222222333333344456778889999999999999999999999999998888742  


Q ss_pred             -----cCchhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHh
Q 041759          478 -----SNNEFVSYGVFGLVIICCGFFVICLPETRGSSLCDTIDQR  517 (525)
Q Consensus       478 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (525)
                           ..+....+++++++++++.++.+++||+++|++++..++.
T Consensus       468 ~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e~  512 (538)
T KOG0252|consen  468 HNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNEE  512 (538)
T ss_pred             ccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHHHhcChh
Confidence                 3356788999999999999999999999999988775443

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=4.9e-31  Score=267.02  Aligned_cols=376  Identities=13%  Similarity=0.127  Sum_probs=279.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      .+++++++.++..++.......                                     .|.+.+++|.   +..+.+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~p~~~~~~g~---s~~~~~~~   50 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTA-------------------------------------LPSMAQSLGE---SPLHMHMV   50 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH-------------------------------------HHHHHHHhCc---CHHHHHHH
Confidence            4667778888888888888878                                     8999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      .+.+.++..++.+++|+++|| +|||++++.+.++.+++.+++.++++++.++++|+++|++.+...+...+++.|++|+
T Consensus        51 ~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~  129 (471)
T PRK10504         51 IVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR  129 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHH---
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIK---  276 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~---  276 (525)
                      ++|+++.++.....++|..++|.+ +.+.+..+||+.|.+..+...+..++.....|+.+.   .+.+.+.......   
T Consensus       130 ~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~  206 (471)
T PRK10504        130 EQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVG  206 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHH
Confidence            999999999999999999999998 556667899999999887777666455555555431   1111111110000   


Q ss_pred             ----h--hCCCcCCcc-chhhhh------------hhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHH
Q 041759          277 ----S--LSPIKDSNQ-LSLSLV------------SAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGI  337 (525)
Q Consensus       277 ----~--~~~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  337 (525)
                          .  ... .+... ......            ...++....  ++     ..+ .+++++|.++..+...++.....
T Consensus       207 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~-~~l~~~~~~~~~l~~~~~~~~~~  277 (471)
T PRK10504        207 MATLTLALDG-SKGLGLSPLAIAGLVAVGVVALLLYLLHARNNN--RA-----LFS-LKLFRTRTFSLGLAGSFAGRIGS  277 (471)
T ss_pred             HHHHHHHHhc-CCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCC--CC-----ccC-HHHhcccchHHHHHHHHHHHHHH
Confidence                0  000 00000 000000            000000000  00     012 24788888777666666666666


Q ss_pred             HHHHhhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcccccc
Q 041759          338 GVVYYGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNA  416 (525)
Q Consensus       338 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (525)
                      ....+..|++.+. .|.+....+.......+    +.+++.++.+++.||+|+|+.+..+..+..+...++.+....  .
T Consensus       278 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~----~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~--~  351 (471)
T PRK10504        278 GMLPFMTPVFLQIGLGFSPFHAGLMMIPMVL----GSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALL--G  351 (471)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcccc--c
Confidence            6666667777764 78887777766655555    566777889999999999999998888887776666554322  1


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 041759          417 GKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~  475 (525)
                      +........++.+++.+..++....+..+..|++.++.+.++.++...+|..++|.+.|
T Consensus       352 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g  410 (471)
T PRK10504        352 WYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAG  410 (471)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            12223334555567777777888888889999999999999999999999999988877

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=1.4e-30  Score=257.02  Aligned_cols=345  Identities=18%  Similarity=0.221  Sum_probs=256.8

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      .|.+.+++|.   ++.+.+++.+++.++..+++++.|+++|| +|||+++..+.++.+++.++.+++++++.+++.|++.
T Consensus        28 ~p~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  103 (385)
T TIGR00710        28 FPEIAADLST---PASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQ  103 (385)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            8999999999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |++.+...+...+++.|++|+++|+++.++.+....+|..+++.++ .+.+..+||+.|++.++..++..+..+++.||+
T Consensus       104 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (385)
T TIGR00710       104 AFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPET  183 (385)
T ss_pred             HcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999884 455667999999998888777765555666775


Q ss_pred             chHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 041759          259 PRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIG  338 (525)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (525)
                      ++.   +++ ++.++                                    ....+++++++|+++...+...+......
T Consensus       184 ~~~---~~~-~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (385)
T TIGR00710       184 LPY---EAR-IQIST------------------------------------YFETFLLLLKSKMFWGYALIYGASFGGFF  223 (385)
T ss_pred             CCC---ccc-CCHHH------------------------------------HHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence            421   000 00000                                    01245667788876655554444333333


Q ss_pred             HHHhhhhhcc-cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccc
Q 041759          339 VVYYGMTLGI-ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAG  417 (525)
Q Consensus       339 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (525)
                      ......|.+. ++.|.++...+.......+    +.+++.++.+++.||+++|+.+..+..+..++.+++..........
T Consensus       224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~----~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (385)
T TIGR00710       224 AFFSGAPFVYIDIMGVSPSVFGLLFALNII----AMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGS  299 (385)
T ss_pred             HHHHcChHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            3333345444 4678888877777776666    7779999999999999999988888777777666555432210012


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHH
Q 041759          418 KRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVII  493 (525)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~~~~~~~~~~~~~~~~~  493 (525)
                      +.......++.+++.+...+.......|..| +.++++.++.+.....++.+.+.+.+...+.....+..++....
T Consensus       300 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~  374 (385)
T TIGR00710       300 WAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLSCLVLA  374 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHH
Confidence            3334445566677777788888888888887 46899999988887654444444444433333444444444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=2e-30  Score=257.39  Aligned_cols=329  Identities=13%  Similarity=0.093  Sum_probs=248.2

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      +|.+.+++|+   +..+.++..+.+.+++.+++++.|+++|| +|||++++++.++.+++.++..++++++.+++.|+++
T Consensus        36 ~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  111 (406)
T PRK15402         36 MLAVVEDFNA---GAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQ  111 (406)
T ss_pred             hHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            8899999999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |++.+...+...+++.|++|+++|.+..++......+|..++|.+ +.+.+..+||+.|++.++..++..+..++.+||+
T Consensus       112 G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  191 (406)
T PRK15402        112 GIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPET  191 (406)
T ss_pred             HhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999998888889999999999999999999988888999999988 4555667999999998888877764555566775


Q ss_pred             chHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 041759          259 PRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIG  338 (525)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (525)
                      ++..   ++..+.    ++                                ...++++++++|.++...+...+......
T Consensus       192 ~~~~---~~~~~~----~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (406)
T PRK15402        192 AGRV---GEKLSL----KE--------------------------------LGRDYKLVLKNRRFVAGALALGLVSLPLL  232 (406)
T ss_pred             Cccc---cccccH----HH--------------------------------HHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            4210   000000    00                                01356678888876655544443333222


Q ss_pred             HHHhhhhhc-ccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccc
Q 041759          339 VVYYGMTLG-IENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAG  417 (525)
Q Consensus       339 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (525)
                      ......|.+ .+.++.+....+.......+    +.+++.++.+++.||+++|+.+.++.++..++.+++..........
T Consensus       233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~----~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  308 (406)
T PRK15402        233 AWIALSPVILISGEQLSSYEYGLLQVPVFG----ALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHA  308 (406)
T ss_pred             HHHHHhHHHHHHHhCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            222223444 34577777666655444444    5668899999999999999999888887777766665543111112


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          418 KRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      +....+..++.+++.+...+......... +++.+++..+..+....+|..+++.+.+.
T Consensus       309 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~  366 (406)
T PRK15402        309 YLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKH  366 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33455566667777776666555554443 34789999999999999999999999985

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=2.6e-31  Score=267.55  Aligned_cols=355  Identities=13%  Similarity=0.081  Sum_probs=243.2

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      .|.+.+|+|+   +..+.+++.+.+.+++.+++++.|+++|| +|||+++..+.++++++.++++++++++.+++.|++.
T Consensus        59 ~~~l~~~~gl---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~  134 (476)
T PLN00028         59 LPIIRDNLNL---TKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFI  134 (476)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            8899999999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHH----hc-c-----CCchHHHHHHHHHHHHHHHh
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAY----TN-R-----SSSWTIIYLWTSIPTLVYSG  249 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~----~~-~-----~~~wr~~f~~~~~~~~~~~~  249 (525)
                      |++.+... ....+++|++|+++|++++++.....++|..+++.+..    .+ .     ..|||+.|++.+++.++..+
T Consensus       135 G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l  213 (476)
T PLN00028        135 GFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGI  213 (476)
T ss_pred             HHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHH
Confidence            99988643 45567899999999999999998777777766654422    11 1     24899999999998887774


Q ss_pred             HhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHH
Q 041759          250 LLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLA  329 (525)
Q Consensus       250 ~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  329 (525)
                      +.+++.++.|+     ++.++.+       + ..+             .++       .+....+++.+++++.+...+.
T Consensus       214 ~~~~~~~~~p~-----~~~~~~~-------~-~~~-------------~~~-------~~~~~~~~~~~~~~~~~~~~~~  260 (476)
T PLN00028        214 LVLTLGQDLPD-----GNYRELK-------K-SGT-------------MPK-------DSFSKVLRYGVTNYRTWILALT  260 (476)
T ss_pred             HHHHHcCcCCC-----CchhhHH-------h-cCc-------------ccc-------ccHHHHHHHHHcCchhHHHHHH
Confidence            44443344332     1100000       0 000             000       0001245666777775544433


Q ss_pred             HHHHHHHHHHHHhhhhhc-ccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChh-------HHHHHHHHHH
Q 041759          330 LMVPGFGIGVVYYGMTLG-IENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKS-------SLLVLFIISG  401 (525)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~-------~~~~~~~~~~  401 (525)
                      .+.............|.+ .++.|.+...++....+..+    +.+++.++.|+++||++||+       ...+...+.+
T Consensus       261 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~----~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~  336 (476)
T PLN00028        261 YGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGL----MNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGG  336 (476)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHH
Confidence            322222222222223443 45578888888888777777    77799999999999998652       2222222222


Q ss_pred             HHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc-cCc
Q 041759          402 ICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG-SNN  480 (525)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~-~~~  480 (525)
                      +..+++.... .    .....+.+++.+++.+...+..+.+..+..| +.++++.|+.+..+.+|++++|.+.+.. ..+
T Consensus       337 i~~~~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~  410 (476)
T PLN00028        337 VFCIWLGRAN-S----LGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYS  410 (476)
T ss_pred             HHHHHhcccc-h----HHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCcc
Confidence            2222222111 1    2233444455555555566667777777655 6789999999988899999999887743 234


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhc
Q 041759          481 EFVSYGVFGLVIICCGFFVICL  502 (525)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~  502 (525)
                      +...|.+.+++.+++.++.+++
T Consensus       411 y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        411 TETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhe
Confidence            6777888887777777766655

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=2.7e-31  Score=264.39  Aligned_cols=364  Identities=13%  Similarity=0.051  Sum_probs=269.2

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHh-----hhhHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIF-----SNNLWIYSL  174 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~  174 (525)
                      .|.+.++++.   +..+.|++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++.+.     .++++.+++
T Consensus        40 ~~~~~~~~~~---s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  115 (417)
T PRK10489         40 VPVQIQMMTG---STLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYL  115 (417)
T ss_pred             HHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            7778888888   99999999999999999999999999999 99999999988888877665542     567899999


Q ss_pred             HHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHHHhHhhe
Q 041759          175 LRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNRSSSWTIIYLWTSIPTLVYSGLLYI  253 (525)
Q Consensus       175 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~  253 (525)
                      .|++.|++.+...+...+++.|+.|+++|+++.++.....++|.++||.++ .+....+|++.|++.++..++.. +..+
T Consensus       116 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~-~~~~  194 (417)
T PRK10489        116 LGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITL-LPLL  194 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHH
Confidence            999999999988888899999999999999999999999999999999985 44556689999998887777666 5555


Q ss_pred             eecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHH
Q 041759          254 FVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVP  333 (525)
Q Consensus       254 ~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  333 (525)
                      .+||+++.   +++.++.   .++                                ....++.++++|.++...+..++.
T Consensus       195 ~l~~~~~~---~~~~~~~---~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  236 (417)
T PRK10489        195 RLPALPPP---PQPREHP---LRS--------------------------------LLAGFRFLLASPVVGGIALLGGLL  236 (417)
T ss_pred             hCCCCCCC---Ccccccc---hHH--------------------------------HHHHHHHHHcChHHHHHHHHHHHH
Confidence            66765321   0000000   000                                002455677777755544443333


Q ss_pred             HHHHHHHHhhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcc
Q 041759          334 GFGIGVVYYGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVAND  412 (525)
Q Consensus       334 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~  412 (525)
                      .... ......|.+.++ .|.+....+.+.+...+    +.+++.++.+++.||.++++.+..+..+.+++.+++...++
T Consensus       237 ~~~~-~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~----g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  311 (417)
T PRK10489        237 TMAS-AVRVLYPALADEVWQMGAAQIGLLYAAVPL----GAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPM  311 (417)
T ss_pred             HHHH-hHHHhhHHHHHhccCCChhHhHHHHHHHHH----HHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccch
Confidence            2222 223334555555 78888777777777666    77789999999999987777787777777766665544322


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHH
Q 041759          413 ISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGL  490 (525)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~  490 (525)
                           +....+..++.+++.+...+...++..|..|++.|+++.|+.+....+|..++|.+.|.  ...+....+.+.++
T Consensus       312 -----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~  386 (417)
T PRK10489        312 -----WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGF  386 (417)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHH
Confidence                 33445566666677666667778899999999999999999999999999999999985  22345556665555


Q ss_pred             HHHH-HHHHHHhccCCCCCCccchHHH
Q 041759          491 VIIC-CGFFVICLPETRGSSLCDTIDQ  516 (525)
Q Consensus       491 ~~~~-~~~~~~~~~~~~~~~~~~~~~~  516 (525)
                      +.++ +.+....+++.|+++.+|.+++
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (417)
T PRK10489        387 GLLIIGVLLLLVLGELRRFRQTPPEVD  413 (417)
T ss_pred             HHHHHHHHHHHhcccccccccccccCC
Confidence            4444 4455566788887777666544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=1.3e-30  Score=256.09  Aligned_cols=340  Identities=11%  Similarity=0.050  Sum_probs=247.0

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      +|.+++|+|+   +..+.|++.+.+.+++.+++++.|+++|| +|||+++.++.++.+++.+++++++|++.+++.|++.
T Consensus        26 l~~~~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~  101 (382)
T PRK10091         26 LTELAHDVGI---SIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVS  101 (382)
T ss_pred             hHHHHHHcCC---CHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            8999999999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |++.+...+....++.|++++++|++++++...+..+|..+++.++ .+....+||+.|++.+++.++..+..+.++||.
T Consensus       102 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~  181 (382)
T PRK10091        102 GFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDI  181 (382)
T ss_pred             HhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999988888888899999999999999999999999999999884 455667999999999988777664555667774


Q ss_pred             chHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHH-
Q 041759          259 PRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGI-  337 (525)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-  337 (525)
                      ++    +.+. +.                                        ....+.++++..+......++...+. 
T Consensus       182 ~~----~~~~-~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (382)
T PRK10091        182 RD----EAKG-GL----------------------------------------REQFHFLRSPAPWLIFAATMFGNAGVF  216 (382)
T ss_pred             Cc----cccc-CH----------------------------------------HHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            31    0000 00                                        01112345555444333332222222 


Q ss_pred             HHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccc
Q 041759          338 GVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAG  417 (525)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (525)
                      ....+..+++.+..|.+....+.......+    +.+++.++.+++.||+++|+.+..+..+..++.+++......   .
T Consensus       217 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~----~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~---~  289 (382)
T PRK10091        217 AWFSYIKPYMMFISGFSETSMTFIMMLVGL----GMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGM---K  289 (382)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhh---H
Confidence            222334455555578888888887777777    777999999999999999999988888777776655443332   1


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH-HHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--c-cCchhHHHHHHHHHHH
Q 041759          418 KRMRIGLELASLFSAYIAYTV-IFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--G-SNNEFVSYGVFGLVII  493 (525)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~-~~~~~~~~~~~~~~~~  493 (525)
                      + ...+..++.+.+.....+. ......+..|.+.++.+  ..+....+|..++|.+.|.  + ..++...+.+.+++.+
T Consensus       290 ~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~  366 (382)
T PRK10091        290 T-ASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSF  366 (382)
T ss_pred             H-HHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHH
Confidence            2 3333333444444333332 22344444455555544  3466778999999999985  2 2356666666666555


Q ss_pred             HHHHH
Q 041759          494 CCGFF  498 (525)
Q Consensus       494 ~~~~~  498 (525)
                      +....
T Consensus       367 ~~~~~  371 (382)
T PRK10091        367 AAMSS  371 (382)
T ss_pred             HHHHH
Confidence            54443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=4.4e-31  Score=268.78  Aligned_cols=380  Identities=13%  Similarity=0.097  Sum_probs=285.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      .+..++++.++..+|....+..                                     .|.+.+++|.   +..+.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~p~~~~~~g~---s~~~~~~~   42 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVA-------------------------------------IPTIAGDLGS---SLSQVQWV   42 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHhcCC---ChhhhhHH
Confidence            3567778899999999999988                                     9999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      .+.+.++..++.++.|+++|| +|||++++++.++++++.+++++++|++.++++|+++|++.+...+...+++.|++|+
T Consensus        43 ~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~  121 (485)
T TIGR00711        43 ITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP  121 (485)
T ss_pred             HHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHH----
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVI----  275 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~----  275 (525)
                      ++|+++.+++..+..+|..++|.+ +.+.+..+||+.|++.+++.++..++..+++||+++.  .+++.+......    
T Consensus       122 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~  199 (485)
T TIGR00711       122 EKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVG  199 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHH
Confidence            999999999999999999999998 5566778999999998888877765666667765421  111111111000    


Q ss_pred             -----HhhCCCc-CCccchhhhhh------------hccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHH
Q 041759          276 -----KSLSPIK-DSNQLSLSLVS------------AVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGI  337 (525)
Q Consensus       276 -----~~~~~~~-~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  337 (525)
                           ....++. ++...+.....            ...+..++   ++     ....++++++.++...+..++..+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (485)
T TIGR00711       200 LGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDD---NP-----LVDLRLFKYRNFTIGCVYMSLLGLGL  271 (485)
T ss_pred             HHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCC---CC-----ccCHHHHcCCChHHHHHHHHHHHHHH
Confidence                 0000000 00000000000            00000000   00     11235778887776666666555555


Q ss_pred             HHHHhhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcccccc
Q 041759          338 GVVYYGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNA  416 (525)
Q Consensus       338 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (525)
                      ....+..|.++++ .|.+..+.+.......+    +.+++.++.+++.||++||+.+.++..+.+++..++.+.... ..
T Consensus       272 ~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~----~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~  346 (485)
T TIGR00711       272 YGSFYLLPLYLQQVLGYTALQAGLHILPVGL----APMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP-DT  346 (485)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC-CC
Confidence            5555556666654 78888888877776666    777999999999999999999998888888777766532211 12


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          417 GKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      +........++.+++.+..++.......+..|++.++++.++.+....+|+.+++.+.+.
T Consensus       347 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~  406 (485)
T TIGR00711       347 PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITT  406 (485)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233455566777788887777777777788999999999999999999999999998874

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=1.2e-31  Score=261.30  Aligned_cols=329  Identities=21%  Similarity=0.259  Sum_probs=250.3

Q ss_pred             cc-ceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 041759          100 AL-TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFF  178 (525)
Q Consensus       100 ~~-~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  178 (525)
                      .| .+.+++|.   +..+.+++.+++.++..+++++.|+++|| +|||+++.++.++.+++.++..+++|++.+++.|++
T Consensus        19 ~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (352)
T PF07690_consen   19 LPLYLAEELGL---SPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFL   94 (352)
T ss_dssp             HH-HHHCCSTT---TSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccc
Confidence            77 89999999   99999999999999999999999999999 999999999999999997777777888899999999


Q ss_pred             HhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHHHHHHHHHHHhHhheeecC
Q 041759          179 SGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYT-NRSSSWTIIYLWTSIPTLVYSGLLYIFVSE  257 (525)
Q Consensus       179 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~-~~~~~wr~~f~~~~~~~~~~~~~~~~~lpe  257 (525)
                      .|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.++.. ....+||+.|++.+++.++..++...++++
T Consensus        95 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~  174 (352)
T PF07690_consen   95 LGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPE  174 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred             cccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhh
Confidence            9999999999999999999999999999999999999999999999554 457799999999999999887544455555


Q ss_pred             CchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhh-hhhhhcchhHHHHHHHHHHHHHH
Q 041759          258 SPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSS-IRELFVRRWALERTLALMVPGFG  336 (525)
Q Consensus       258 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~  336 (525)
                      +|+....+++.++               +             +..+++     ..+ ++.++++|.++......+...+.
T Consensus       175 ~~~~~~~~~~~~~---------------~-------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (352)
T PF07690_consen  175 PPPPRERESPKES---------------E-------------SKKPKP-----LKPGFKSLFKNPVLWILLIAFFLFFFV  221 (352)
T ss_dssp             -STTTT--SSTTT---------------T---------------HHHC-----CCH-CTHHHHHHCCHHHHHHHHHHHHH
T ss_pred             ccccccccccccc---------------c-------------cccccc-----cccccccccccchhhhhhhhhhHHHHH
Confidence            4321000000000               0             000000     012 55666666544233333333334


Q ss_pred             HHHHHhhhhhc-ccccCCh-hHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcccc
Q 041759          337 IGVVYYGMTLG-IENLGFD-IYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDIS  414 (525)
Q Consensus       337 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (525)
                      ........|.+ .+.++.+ ....+...+...+    +.+++.++.+++.||+++|+...+......+..+.+...... 
T Consensus       222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  296 (352)
T PF07690_consen  222 FSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGI----VGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS-  296 (352)
T ss_dssp             HHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH-
T ss_pred             HHHhhcccchhhhhccCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            44455555665 6667888 6777777777666    666789999999999999887777777766666655544332 


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHH
Q 041759          415 NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSS  471 (525)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p  471 (525)
                       .+....+...++.+++.+...+....+..|..|++.++++.|+.+....+|..++|
T Consensus       297 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  297 -SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence             12334555677778888888999999999999999999999999999999999988

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=2.3e-31  Score=262.04  Aligned_cols=345  Identities=16%  Similarity=0.137  Sum_probs=247.1

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      .|.+++++|+   +..+.|++.+++.++..+++++.|+++|| +|||+++.++.++.+++.++.+++++++.+++.|++.
T Consensus        18 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (379)
T TIGR00881        18 MPYLVEEIGL---SKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALN   93 (379)
T ss_pred             hHHHHHHhCC---CHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            8999999999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHH-HH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLP-AI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSE  257 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~-~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpe  257 (525)
                      |++.+...+...+++.|++|+++|+++.++.+.+..+|.++++ ++ +.+....+||+.|++.+++.++..++.+++.||
T Consensus        94 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (379)
T TIGR00881        94 GIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRD  173 (379)
T ss_pred             HhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCC
Confidence            9999999999999999999999999999999999999999999 45 444556799999999988887776577777888


Q ss_pred             CchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHH
Q 041759          258 SPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGI  337 (525)
Q Consensus       258 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  337 (525)
                      +|+..   +..++         + +...+..    +..++.++    ++........++++++|.++...+..++.....
T Consensus       174 ~~~~~---~~~~~---------~-~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (379)
T TIGR00881       174 SPQSC---GLPPA---------E-EMPNEEP----DGDAEKKE----EELTKKQIFLQYVLLNKVLWYISLGYVFVYVVR  232 (379)
T ss_pred             Ccccc---ccCcc---------c-cCccccc----cccccccc----ccccchHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            66321   00000         0 0000000    00000000    000011134567788887666655555555444


Q ss_pred             HHHHhhhhhcc-cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcC-hhHHH-HHHHH-HHHHHHHHHHhccc
Q 041759          338 GVVYYGMTLGI-ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNR-KSSLL-VLFII-SGICSIMAVVANDI  413 (525)
Q Consensus       338 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~-~~~~~-~~~~~-~~~~~~~~~~~~~~  413 (525)
                      .......+.+. +..|.+....+.......+    +.+++.++.+++.||..+ |+... ..... ..++..........
T Consensus       233 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (379)
T TIGR00881       233 TGILDWSPLYLTQEKGFSKEKASWAFTLYEL----GGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAA  308 (379)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcch
Confidence            43333444444 4578888887777777776    777999999999998643 33222 22111 11222221111111


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          414 SNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                         +.....+..++.++......+....+..|..|++.|+++.|+.+....+|+.++|.+.|.
T Consensus       309 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~  368 (379)
T TIGR00881       309 ---NPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGY  368 (379)
T ss_pred             ---hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHH
Confidence               122333444445554445555667788999999999999999999999999999999885

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=1.4e-30  Score=265.70  Aligned_cols=396  Identities=13%  Similarity=0.079  Sum_probs=263.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      .+..++++.+++.++.......                                     .|.+.+++|+   +..+.+++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~i~~~~~~---s~~~~~~~   60 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLV-------------------------------------LTEVQGEFGL---TTVQAASL   60 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHhCC---CHHHHHHH
Confidence            6778888899999999999888                                     8999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      .+.+.+++.+++++.|+++|| +|||++++.+.++.+++.++.++++|++.+++.|++.|++.+...+....++.|++|+
T Consensus        61 ~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~  139 (496)
T PRK03893         61 ISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPK  139 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhC
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLS  279 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~  279 (525)
                      ++|+++.++...+..+|.++++.+ +.+....+||+.|++..+..++.. +....+||++++...+++.++.++..+...
T Consensus       140 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  218 (496)
T PRK03893        140 HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFAL-WLRKNLPEAEDWKEKHAGKAPVRTMVDILY  218 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH-HHHHhCCCchhhhhhccccccchhHHHHHh
Confidence            999999999999999999999988 556677899999988655544433 445566776543221111100000000000


Q ss_pred             CCcCCccchhhhhhhccCCCCcccccccccchhhh----------------hhhhcchhHHHHHHHHHHHHHHHH----H
Q 041759          280 PIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSI----------------RELFVRRWALERTLALMVPGFGIG----V  339 (525)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~~~~~~~~~~----~  339 (525)
                      + .+.+ .............-...-....  ...+                ....+.++ +..........+...    .
T Consensus       219 ~-~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  293 (496)
T PRK03893        219 R-GEHR-IINILLTLAAAAALWFCFAGNL--QNAAIVAVLGLLCAAIFISFMVQSSGKR-WPTGVMLMVVVLFAFLYSWP  293 (496)
T ss_pred             c-chhH-HHHHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHhccch
Confidence            0 0000 0000000000000000000000  0000                00000000 000000000000000    1


Q ss_pred             HHhhhhhcc-cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccch
Q 041759          340 VYYGMTLGI-ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGK  418 (525)
Q Consensus       340 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (525)
                      ....+|.++ ++.|.+....+.+.+...+    +.+++.++.+++.||++||+.+..+..+..+..+.+......   .+
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~----~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~  366 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGF----GAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGA---NV  366 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccc---HH
Confidence            123346666 4788888888888877777    788999999999999999998888776666555443333222   12


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHH
Q 041759          419 RMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGL  490 (525)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~  490 (525)
                      .......++.++......+....+..|.+|++.|++++|+.+....+|+.++|++.|.  +..++...+...++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~  440 (496)
T PRK03893        367 WVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF  440 (496)
T ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence            2222222222222233345666788899999999999999999999999999999985  33344445544443

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=3.1e-30  Score=254.50  Aligned_cols=368  Identities=15%  Similarity=0.116  Sum_probs=269.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      .....+++.+..+.+....+..                                     +|++++++|+   +..+.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~g~~-------------------------------------~~~i~~~~~~---s~~~~g~~   47 (394)
T PRK03699          8 LTWISFLSYALTGALVIVTGMV-------------------------------------MGPIAEYFNL---PVSSMSNT   47 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh-------------------------------------hHHHHHHhCC---CHHHHHHH
Confidence            5667777888888888888888                                     9999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      .+.+.+++.+++++.|++.|| +|||+++..+.++.+++.++.+++++++.+++.|+++|++.+...+....++.|++|+
T Consensus        48 ~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~  126 (394)
T PRK03699         48 FTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEG  126 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhccc
Confidence            999999999999999999999 9999999999999999999999999999999999999999998888889999999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHH-HHhcc-CCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhh
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAI-AYTNR-SSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSL  278 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~-~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~  278 (525)
                      ++|++.++..+....+|..++|.+ +.++. ..+||+.|.+.+++.++..++.+ + ++.|+.   + +.          
T Consensus       127 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~-~-~~~p~~---~-~~----------  190 (394)
T PRK03699        127 KQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTL-F-SEFPAL---G-KH----------  190 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH-h-cCCccc---c-cc----------
Confidence            999999999989999999888877 45443 57999999998887776652322 2 222210   0 00          


Q ss_pred             CCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCChhHH
Q 041759          279 SPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGI-ENLGFDIYL  357 (525)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  357 (525)
                       + . +           ++ ++            ..++.+ ++.++...+..++............|.++ +++|.+..+
T Consensus       191 -~-~-~-----------~~-~~------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~  242 (394)
T PRK03699        191 -A-P-K-----------AD-KP------------VAKEKW-GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLED  242 (394)
T ss_pred             -C-c-c-----------cc-Cc------------cccccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence             0 0 0           00 00            000011 23323222222222223333334455555 557888888


Q ss_pred             HHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHH
Q 041759          358 GVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYT  437 (525)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (525)
                      .+...+...+    +.+++.++.+++.||+++|+.+.....+..+...++....+.     ....+..++.+++.+..++
T Consensus       243 ~~~~~~~~~~----~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~~~~~~~~  313 (394)
T PRK03699        243 AGNLVSNFWM----AYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDP-----SHLLYAILGLGFFSSAIYT  313 (394)
T ss_pred             hhHHHHHHHH----HHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCc-----hHHHHHHHHHHHHHHHHHH
Confidence            8887777666    677999999999999999998887777666655554433322     2344456666777777778


Q ss_pred             HHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHHHhcc
Q 041759          438 VIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFVICLP  503 (525)
Q Consensus       438 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (525)
                      ...++..+..|.+ ++...+.......+|..++|.+.|.  +..+....++..+++.+++.+.....+
T Consensus       314 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        314 TIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence            7777777777644 5677888888889999999999985  334566677666666666655444443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.98  E-value=2.1e-30  Score=253.79  Aligned_cols=329  Identities=12%  Similarity=0.004  Sum_probs=257.9

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh-----hHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN-----NLWIYSL  174 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~-----~~~~l~~  174 (525)
                      +|.+..+++.   +..+.|++.+++.++..+++++.|+++|| +|||++++.+.++.+++.++..+.+     +++.+++
T Consensus        22 ~~~~~~~~~~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (365)
T TIGR00900        22 LPLYVLAGTG---SASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYV   97 (365)
T ss_pred             HHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            7888888998   99999999999999999999999999999 9999999999999999999888887     9999999


Q ss_pred             HHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhhe
Q 041759          175 LRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYI  253 (525)
Q Consensus       175 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~  253 (525)
                      .|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.+++|.+ +.+....+||+.|++.++..++..+..+.
T Consensus        98 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900        98 LAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998 44556679999999888776665523222


Q ss_pred             e-ecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHH
Q 041759          254 F-VSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMV  332 (525)
Q Consensus       254 ~-lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  332 (525)
                      . .||.++    +++.+..++..++                                ....++.++++|.++...+..++
T Consensus       178 ~~~~~~~~----~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~  221 (365)
T TIGR00900       178 VRIPELAA----SEIQALSNAVLRD--------------------------------TREGIKFVLKNPLLRTLLLLALL  221 (365)
T ss_pred             cccccCCC----ccccccchhHHHH--------------------------------HHhHHHHHHcCcHHHHHHHHHHH
Confidence            2 232211    0000000000000                                01356677888887666555555


Q ss_pred             HHHHHHHHH-hhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHh
Q 041759          333 PGFGIGVVY-YGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVA  410 (525)
Q Consensus       333 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~  410 (525)
                      ......... ...|++.++ ++.+....+.......+    +.+++.++.+++.||.+||+.+..+..+.+++...+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (365)
T TIGR00900       222 FNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGL----GALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT  297 (365)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh
Confidence            544443333 555666655 78887777777776666    777899999999999999998888877777776666554


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          411 NDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      ...    .....+..++.+++.+...+...++..|..|++.|+++.|+.+....++..++|.+.|.
T Consensus       298 ~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~  359 (365)
T TIGR00900       298 PPN----FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGP  359 (365)
T ss_pred             chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            321    33556677778888888888999999999999999999999999999999999999885

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.98  E-value=2.4e-30  Score=258.73  Aligned_cols=397  Identities=12%  Similarity=0.024  Sum_probs=261.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      .+....+.+.....+.....+.                                     .|.+++ +|+   +..+.+++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~p~~~~-~g~---s~~~~g~~   66 (438)
T TIGR00712        28 VFLGIFFGYAAYYLVRKNFALA-------------------------------------MPYLVE-QGF---SKGELGFA   66 (438)
T ss_pred             HHHHHHHHHHHHHHHhccHHhh-------------------------------------hHHHHH-cCC---CHhHhHHH
Confidence            4555566667777777777777                                     677775 599   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHhhcccchhhhhheeeEe
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS----NNLWIYSLLRFFSGISRATIGTCTIVLLTE  196 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  196 (525)
                      .+++.++..+++++.|+++|| +|||+++..+.++.+++.++.++.    ++++.+.+.|++.|++.+...+....++.|
T Consensus        67 ~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~  145 (438)
T TIGR00712        67 LSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVH  145 (438)
T ss_pred             HHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            999999999999999999999 999999999999999998887764    467888899999999999988888889999


Q ss_pred             eecCcchhhHHhHHHHHHHHHHHHHHHH-HHhcc-CCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHH
Q 041759          197 KVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNR-SSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEV  274 (525)
Q Consensus       197 ~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~-~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~  274 (525)
                      ++|+++|++++++.+.+..+|..+++.+ +.... ..+||+.|++.+++.++..++.++++||+|+....+ +.++.   
T Consensus       146 ~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~---  221 (438)
T TIGR00712       146 WWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIEEY---  221 (438)
T ss_pred             hcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cchhc---
Confidence            9999999999999999999999998766 44343 469999999999988887656677788876421000 00000   


Q ss_pred             HHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCC
Q 041759          275 IKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIEN-LGF  353 (525)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  353 (525)
                             +++.  +.+    ..++++.+.+.+    ....+.+++++.++...+..++............|.++++ .|.
T Consensus       222 -------~~~~--~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~  284 (438)
T TIGR00712       222 -------RNDY--PDD----YNEKAEQELTAK----EIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHF  284 (438)
T ss_pred             -------cccc--ccc----cccccccccchH----HHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCC
Confidence                   0000  000    000000000000    0112346788877766555555544443344445665554 688


Q ss_pred             hhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHH--HHHHHHhccccccchhHHHHHHHHHHHH
Q 041759          354 DIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGIC--SIMAVVANDISNAGKRMRIGLELASLFS  431 (525)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (525)
                      +....+.......+    +.+++.++.+++.||+++++....+.....+.  .++.......  .+........+..+++
T Consensus       285 s~~~~~~~~~~~~~----~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~  358 (438)
T TIGR00712       285 ALDKSSWAYFLYEY----AGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPA--GNPLVDMICMIVIGFL  358 (438)
T ss_pred             ChhhHHHHHHHHHH----HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHH
Confidence            87777776666655    66689999999999996443222232222211  1111111111  1122222222333332


Q ss_pred             HHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHH-HHHHHHHhh--ccCchhHHHHHHHHHHHHHHHH-HHhccCCC
Q 041759          432 AYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAA-IFSSVLVAA--GSNNEFVSYGVFGLVIICCGFF-VICLPETR  506 (525)
Q Consensus       432 ~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~-~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  506 (525)
                      .............|.+|++.|+++.|+.+....+|+ .++|.+.|.  +..++...+.+.+++.+++.+. .+.++|.|
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       359 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            222222223467799999999999999998888774 688999884  3335667777666666555544 34445543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.98  E-value=7.8e-30  Score=250.64  Aligned_cols=360  Identities=15%  Similarity=0.143  Sum_probs=260.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhHH
Q 041759           42 AILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPA  121 (525)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~~  121 (525)
                      +..+.++.++...........                                     +|.+.+++|+   |..+.|++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~-------------------------------------lp~~~~~~~~---s~~~~G~~~   47 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTL-------------------------------------VPLWLAQEHL---PTWQVGVVS   47 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHH-------------------------------------HHHHHHHcCC---CHHHHHHHH
Confidence            555667777777777777777                                     8999999999   999999999


Q ss_pred             HHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecCc
Q 041759          122 ASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTE  201 (525)
Q Consensus       122 s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  201 (525)
                      +.+.++..+++++.|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+...+.+.+..+++
T Consensus        48 s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  126 (381)
T PRK03633         48 SSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR  126 (381)
T ss_pred             HHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            99999999999999999999 99999999999999999999999999999999999999999988888887778888899


Q ss_pred             chhhHHhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCC
Q 041759          202 WRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPI  281 (525)
Q Consensus       202 ~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~  281 (525)
                      +|+++++++..+.++|..+||.++..+....++...+..+........+.....++++       +            + 
T Consensus       127 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~------------~-  186 (381)
T PRK03633        127 NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLAAILPLLFTRILNQQ-------A------------E-  186 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhcccCCC-------C------------C-
Confidence            9999999999999999999999966554322222222222222211111111111110       0            0 


Q ss_pred             cCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHH
Q 041759          282 KDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVF  361 (525)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (525)
                      +                 +    ++     .+.++.+++|.++......+.........+..+|.+.++.|.+....+..
T Consensus       187 ~-----------------~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~  240 (381)
T PRK03633        187 N-----------------H----DS-----TSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFW  240 (381)
T ss_pred             C-----------------C----CC-----CCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            0                 0    00     13445667776554333233333333444455677777778887777777


Q ss_pred             HHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 041759          362 NALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFI  441 (525)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (525)
                      .+...+    +.+++.+..+++.||+++|+.+..+..+..++.+.+.  ...      .......+.+.+.....|...+
T Consensus       241 ~~~~~~----~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~~------~~~~~~~l~g~~~~~~~p~~~~  308 (381)
T PRK03633        241 MALLVS----AGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQA------AMAPALFILGAAGFTLYPVAMA  308 (381)
T ss_pred             HHHHHH----HHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hhH------HHHHHHHHHHHHHHhHHHHHHH
Confidence            766666    7778999999999999999998888777776655443  111      1222334445555566788888


Q ss_pred             hhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHHH
Q 041759          442 YAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFVI  500 (525)
Q Consensus       442 ~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~  500 (525)
                      .+.|..|++.++...+..+....+|..++|.+.|+  +..+....|.+.+.+.++..+..+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        309 WACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            88899988887888888888889999999999995  334566677777666665544433

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.98  E-value=2.5e-30  Score=253.92  Aligned_cols=364  Identities=15%  Similarity=0.155  Sum_probs=275.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      ++..+++.++....|..+++.+                                  .  ...+.+|.+.   ...+.+.+
T Consensus        46 i~~~~~~~y~~~~~d~~si~~a----------------------------------~--l~g~~edl~~---~~~~l~~~   86 (495)
T KOG2533|consen   46 ILPFLCYLYFHAYLDKSSIVNA----------------------------------S--LSGLKEDLKL---VGNQLGVL   86 (495)
T ss_pred             HHHHHHHHHHHHhcchhcchhH----------------------------------H--HcCCccccch---hhhhhhhH
Confidence            7777888888889998888877                                  2  5668899999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      .++++++++++++++|.+.|| ++..+.+....+++++..++....+|++.+++.|++.|+..+..+|....+++.|+.+
T Consensus        87 ~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~  165 (495)
T KOG2533|consen   87 DTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGK  165 (495)
T ss_pred             HHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcCh
Confidence            999999999999999999999 9999999999999999998888899999999999999999999999999999999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHHHHh-------ccCCchHHHHHHHHHHHHHHHhHhheeecCCch--HhhhcCCHHHH
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAIAYT-------NRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPR--WLFMQGRQEEA  271 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l~~~-------~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~--~~~~~~~~~~~  271 (525)
                      ++|++.++++.+..++|.++|.++++.       ....||||.|++.+++.++..++.++++|+.|.  |...+++.+-.
T Consensus       166 ~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~  245 (495)
T KOG2533|consen  166 SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELV  245 (495)
T ss_pred             hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHH
Confidence            999999999999999999999999776       346799999999999999999899999999986  22111111000


Q ss_pred             HHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccc-
Q 041759          272 VEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIEN-  350 (525)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  350 (525)
                         .++..+ .+.....             ++     .....+++.+++|..|...+..++.........+.+|+++++ 
T Consensus       246 ---~~~~~~-~~~~~~~-------------~~-----~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~  303 (495)
T KOG2533|consen  246 ---VERLRE-SPSGGIE-------------NK-----FKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSN  303 (495)
T ss_pred             ---HHHHHh-ccCCCcc-------------cc-----cCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcC
Confidence               111100 0000000             00     112588999999998888888887777777677777888877 


Q ss_pred             cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHh----hcChhHHHHHHHHHHHHH-HHHHHhccccccchhHHHHHH
Q 041759          351 LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQK----WNRKSSLLVLFIISGICS-IMAVVANDISNAGKRMRIGLE  425 (525)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~----~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  425 (525)
                      .+++..++..+.....+    +.+++.+++++++||    ..+|........+..+.. ..+......     .......
T Consensus       304 ~~~s~~~a~~ls~~~~~----~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~-----~~~~~~~  374 (495)
T KOG2533|consen  304 GGYSELQANLLSTPYDV----GGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVL-----PGAYGAF  374 (495)
T ss_pred             CCcChHHhccccchHHh----hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-----hHHhHHH
Confidence            55777777766666655    888999999999999    556655555555554444 333333222     2344445


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCcchhhhh-hHHHHHHHHHHHHHHHHHHh
Q 041759          426 LASLFSAYIAYTVIFIYAIELFPTCVRNSA-TSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~-~~~~~~~~~~g~~~~p~i~~  475 (525)
                      +....+.....+.......+....+.|... .+........+++++|.+.-
T Consensus       375 ~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~  425 (495)
T KOG2533|consen  375 LIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFR  425 (495)
T ss_pred             HhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcc
Confidence            555566666677778888877765554443 34444444666666665554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.98  E-value=1.2e-29  Score=246.89  Aligned_cols=349  Identities=9%  Similarity=-0.001  Sum_probs=246.6

Q ss_pred             ccceee-ccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh-----hhHHHHH
Q 041759          100 ALTIIS-EWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS-----NNLWIYS  173 (525)
Q Consensus       100 ~~~i~~-~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~-----~~~~~l~  173 (525)
                      .+.+.+ |+|+   |..|.+++.+++.+++.++.++.|++.|| +|.|+++.++.++.++.+++.+++     ++++.++
T Consensus        57 ~~~~~~~~~~l---s~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~ll  132 (462)
T PRK15034         57 TVNLNKIGFNF---TTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFI  132 (462)
T ss_pred             HHHhhhhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHH
Confidence            677765 8999   99999999999999999999999999999 999999999999999999999987     8999999


Q ss_pred             HHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHH------hcc-------------CCchH
Q 041759          174 LLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAY------TNR-------------SSSWT  234 (525)
Q Consensus       174 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~------~~~-------------~~~wr  234 (525)
                      +.|++.|++ +..++.....+++|+|+++||+++++.....++|..+++++..      +..             ..+||
T Consensus       133 i~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~  211 (462)
T PRK15034        133 VIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLA  211 (462)
T ss_pred             HHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHH
Confidence            999999998 6688999999999999999999999997666666655443321      111             23488


Q ss_pred             HHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhh
Q 041759          235 IIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSI  314 (525)
Q Consensus       235 ~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (525)
                      .+.++..++.++..++.+++.++.|.     .+.                                         .....
T Consensus       212 ~~~~~~~~~~iv~~i~~~~~~~~~~~-----~~~-----------------------------------------~~~~~  245 (462)
T PRK15034        212 NAAWIWVPLLAIATIAAWSGMNDIAS-----SRA-----------------------------------------SIADQ  245 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccc-----ccc-----------------------------------------CHHHH
Confidence            88888888887777555555544321     000                                         00245


Q ss_pred             hhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHH
Q 041759          315 RELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLL  394 (525)
Q Consensus       315 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~  394 (525)
                      ++++|+|..|...+..+..+.......+.+|++.++ .++.........+..+    ...++++++|+++||+|+++++.
T Consensus       246 ~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l----~~~l~rplgG~LADRiG~~~vl~  320 (462)
T PRK15034        246 LPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPF----IGAIARSVGGAISDKFGGVRVTL  320 (462)
T ss_pred             HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHH----HHHHHHHhhHHHHHhcCchHHHH
Confidence            678899987777666655554444445455665544 2221111111111122    34478899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-ccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCc---------------------chh
Q 041759          395 VLFIISGICSIMAVVA-NDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPT---------------------CVR  452 (525)
Q Consensus       395 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~r  452 (525)
                      ++++.+.+....+... +.....+.....+..+...++.+......+-++++.+|+                     ++-
T Consensus       321 ~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (462)
T PRK15034        321 INFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTET  400 (462)
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHH
Confidence            9888777766443332 221111233344444444455566666777777777774                     145


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhc---cCchhHHHHHHHHHHHHHHHHHHhccC
Q 041759          453 NSATSIMRLAIIFAAIFSSVLVAAG---SNNEFVSYGVFGLVIICCGFFVICLPE  504 (525)
Q Consensus       453 ~~~~~~~~~~~~~g~~~~p~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (525)
                      |.+.|+....+.+|+++.|.+.|..   ..++...++.+.+..+++.++.++...
T Consensus       401 g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~  455 (462)
T PRK15034        401 AAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG  455 (462)
T ss_pred             HHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7888999999999999999888742   234666777777777777776655433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.98  E-value=1.2e-29  Score=250.96  Aligned_cols=345  Identities=13%  Similarity=0.108  Sum_probs=240.8

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      +|.+.+++|.   +..+.++..+++.+++.++++++|+++|| +|||++++.+.++++++++++++++|++.++++|+++
T Consensus        39 l~~i~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~  114 (413)
T PRK15403         39 IINVVRDFNA---DVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQ  114 (413)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8999999999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHH-hccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAY-TNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~-~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |++.+...+....++.|++|+++|++++++...+..+|.++||+++. +.+..+||+.|++.+++.++..+..++.+||+
T Consensus       115 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~  194 (413)
T PRK15403        115 GTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPET  194 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99998777777788999999999999999999999999999999965 44567999999999988887774555667886


Q ss_pred             chHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 041759          259 PRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIG  338 (525)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (525)
                      ++.   +++....+                                    ...+.+++++++|.++...+...+......
T Consensus       195 ~~~---~~~~~~~~------------------------------------~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~  235 (413)
T PRK15403        195 VKR---GAVPFSAK------------------------------------SVLRDFRNVFRNRLFLTGAATLSLSYIPMM  235 (413)
T ss_pred             ccc---cCCCCChH------------------------------------HHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            420   00000000                                    001356778899987776665555444444


Q ss_pred             HHHhhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhc--cccc
Q 041759          339 VVYYGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVAN--DISN  415 (525)
Q Consensus       339 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~  415 (525)
                      ......|.++++ .|.+....+........    +.+++..+.+++.++..+++.......+..++.+++....  ..  
T Consensus       236 ~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~----~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~--  309 (413)
T PRK15403        236 SWVAVSPVILIDAGGMTTSQFAWTQVPVFG----AVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWP--  309 (413)
T ss_pred             HHHHhChHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence            444445666555 57887777766544444    4446666666665444443433222222222222222111  11  


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHHHH
Q 041759          416 AGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG-SNNEFVSYGVFGLVIIC  494 (525)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~-~~~~~~~~~~~~~~~~~  494 (525)
                      ..+...++..++.+++.+...+......-... ...+|++.++.+.....+...++...++. ..+....+...++++.+
T Consensus       310 ~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~-~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  388 (413)
T PRK15403        310 HVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSN-NLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGV  388 (413)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhHHHHHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            12323455666677777777776664332222 22368888888888877777777777642 33455666555554443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.98  E-value=8.5e-31  Score=262.44  Aligned_cols=365  Identities=14%  Similarity=0.052  Sum_probs=253.4

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSL-LRFF  178 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~r~l  178 (525)
                      +|++.+++|+   +..+.+++.+.+.++..++.++.|+++|| +|||++++.+.++.++++++++++++++.+++ .|++
T Consensus        42 ~~~i~~~~g~---s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  117 (455)
T TIGR00892        42 FKELQQIFQA---TYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFI  117 (455)
T ss_pred             HHHHHHHhCc---chhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            8899999999   99999999999999999999999999999 99999999999999999999999999998875 5799


Q ss_pred             HhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecC
Q 041759          179 SGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSE  257 (525)
Q Consensus       179 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpe  257 (525)
                      .|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|.+ +.+...+|||+.|++.+++.++..+..++..++
T Consensus       118 ~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~  196 (455)
T TIGR00892       118 TGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPV  196 (455)
T ss_pred             HHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999777777788889886 789999999999999999999887 566677899999999998887665333333332


Q ss_pred             CchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHH
Q 041759          258 SPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGI  337 (525)
Q Consensus       258 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  337 (525)
                      .+..  .+.+.++ +       . ..+++...+      + .+.....++.+. ....+++++|.++......++...+.
T Consensus       197 ~~~~--~~~~~~~-~-------~-~~~~~~~~~------~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~  257 (455)
T TIGR00892       197 GPSQ--RVSKSKS-K-------E-GLPPDGSTK------K-LSKKSTAEKINR-FLDFSLFTHRGFLVYLSGNVIMFLGF  257 (455)
T ss_pred             Cccc--ccccccc-c-------c-cCCCCCccc------c-ccccchhhhhhh-hcchHHhcCchHHHHHHHHHHHHHHc
Confidence            2110  0000000 0       0 000000000      0 000000000000 01124778887665555544444444


Q ss_pred             HHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhh--cChhHHHHHH--HHHHHHHHHHHHhccc
Q 041759          338 GVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKW--NRKSSLLVLF--IISGICSIMAVVANDI  413 (525)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~--g~~~~~~~~~--~~~~~~~~~~~~~~~~  413 (525)
                      ......++.+.++.|.+....+...++..+    +.+++.++.+++.||.  ++|+...++.  ++.+++.++.....+ 
T Consensus       258 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~----~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-  332 (455)
T TIGR00892       258 FAPIIFLVPYAKDKGVDEYEAAFLLSIIGF----VDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGD-  332 (455)
T ss_pred             cchHHHHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhch-
Confidence            444444555566788888888888877777    7778888899999973  3343333322  222333333222222 


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc--cC-chhHHHHHHHH
Q 041759          414 SNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG--SN-NEFVSYGVFGL  490 (525)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~--~~-~~~~~~~~~~~  490 (525)
                          ....++..++.+++.+...+...+++.|.+|+++++++.|+.+....+|++++|.+.|..  .. ++...|.+.++
T Consensus       333 ----~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~  408 (455)
T TIGR00892       333 ----YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGS  408 (455)
T ss_pred             ----HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhH
Confidence                334556677777888888888889999999999999999999999999999999999952  22 35566666666


Q ss_pred             HHHHHHH
Q 041759          491 VIICCGF  497 (525)
Q Consensus       491 ~~~~~~~  497 (525)
                      +.+++.+
T Consensus       409 ~~li~~~  415 (455)
T TIGR00892       409 IVVSAGL  415 (455)
T ss_pred             HHHHHHH
Confidence            5555443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.5e-30  Score=252.53  Aligned_cols=363  Identities=16%  Similarity=0.176  Sum_probs=269.7

Q ss_pred             eeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhh
Q 041759          104 ISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN--NLWIYSLLRFFSGI  181 (525)
Q Consensus       104 ~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~  181 (525)
                      ..++++   ++.+.|++.+.++.|+.+++++.|+++|| +|-|+++..+.++.++++++..++.  +++.+++.|+++|+
T Consensus        65 ~~~~~w---s~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl  140 (466)
T KOG2532|consen   65 AGEYDW---SSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGL  140 (466)
T ss_pred             CceecC---CHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHH
Confidence            678999   99999999999999999999999999999 9999999999999999999998874  56688999999999


Q ss_pred             cccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccC-CchHHHHHHHHHHHHHHHhHhheeecCCc
Q 041759          182 SRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRS-SSWTIIYLWTSIPTLVYSGLLYIFVSESP  259 (525)
Q Consensus       182 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~lpesp  259 (525)
                      +.|..+|....+.+.|.|++||++..++...+..+|.+++..+ |.+.+. .||+++|++.++.+++..++.+++..|+|
T Consensus       141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P  220 (466)
T KOG2532|consen  141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSP  220 (466)
T ss_pred             HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999999999999999998766 777776 89999999999999999966666777877


Q ss_pred             hHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q 041759          260 RWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGV  339 (525)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  339 (525)
                      ..   ++...+  +.++++.+                ...+...++   +...+++++++++.+|...+..+....+...
T Consensus       221 ~~---h~~is~--~El~~I~~----------------~k~~~~~~~---~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~  276 (466)
T KOG2532|consen  221 SK---HPNISE--KELKYIEK----------------GKSEAHVKK---KPPVPYKAILTSPPVWAIWISAFGGNWGFYL  276 (466)
T ss_pred             cc---CCCCCH--HHHHHHHh----------------cccccccCC---CCCCCHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            42   111100  11111100                000000000   0126899999999988777777666666655


Q ss_pred             HHhhhhhccc-ccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcC---------hhHHHHHHHHHHHHHHHHHH
Q 041759          340 VYYGMTLGIE-NLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNR---------KSSLLVLFIISGICSIMAVV  409 (525)
Q Consensus       340 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~---------~~~~~~~~~~~~~~~~~~~~  409 (525)
                      ...+.|.|++ .++++...++.+.++..+    .+.+..+++|.++||+.+         |..-.++....+++++.+.+
T Consensus       277 l~~y~PtY~~~VL~f~v~~~G~~salP~l----~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~  352 (466)
T KOG2532|consen  277 LLTYLPTYLKEVLGFDVRETGFLSALPFL----AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAF  352 (466)
T ss_pred             HHHHhhHHHHHHhCCChhhhhHHHHHHHH----HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeee
Confidence            5555566665 489999999999999888    888999999999999855         23334566666666666666


Q ss_pred             hccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhcc-C----chhHH
Q 041759          410 ANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGS-N----NEFVS  484 (525)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~~-~----~~~~~  484 (525)
                      ....   +....++++.+.....+...+..+.-..+.. +++.+..+|+.+....+.++++|.+.+... .    .+...
T Consensus       353 ~~~~---~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~V  428 (466)
T KOG2532|consen  353 TSDE---HRLLAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIV  428 (466)
T ss_pred             cCCC---cchHHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHH
Confidence            6554   1222333333322222333233333333334 456799999999999999999999999522 1    46677


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 041759          485 YGVFGLVIICCGFFVICL  502 (525)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~  502 (525)
                      |.+.+++.+++.+++.+.
T Consensus       429 F~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  429 FLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHhchheeEe
Confidence            888888887777665544

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=1.2e-29  Score=249.41  Aligned_cols=357  Identities=18%  Similarity=0.184  Sum_probs=250.9

Q ss_pred             CCccccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 041759           96 PTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLL  175 (525)
Q Consensus        96 p~~~~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  175 (525)
                      |.  +|.+.+++|+   ++.+.+++.+++.++..+++++.|+++|| +|||+++..+.++.+++.+++.++++++.+++.
T Consensus        12 p~--~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (377)
T PRK11102         12 PA--LPVIAADFGV---SAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALAQTIDQLIYM   85 (377)
T ss_pred             cc--HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            55  8999999999   99999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             HHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHHHhHhhee
Q 041759          176 RFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNRSSSWTIIYLWTSIPTLVYSGLLYIF  254 (525)
Q Consensus       176 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  254 (525)
                      |++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.++ .+.+..+||+.|++.+++.++..++..++
T Consensus        86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (377)
T PRK11102         86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF  165 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999884 45566799999999888887776556666


Q ss_pred             ecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHH
Q 041759          255 VSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPG  334 (525)
Q Consensus       255 lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  334 (525)
                      +||+++.    ++              +++.+.+                    +...+++++++++..+...+...+..
T Consensus       166 ~~~~~~~----~~--------------~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (377)
T PRK11102        166 IPETLPK----ER--------------RQPFHLR--------------------TTIRNFASLFRHKRVLGYMLASGFSF  207 (377)
T ss_pred             CCccCcc----cc--------------cCCCChH--------------------HHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            7775320    00              0000000                    00134566778877555444433333


Q ss_pred             HHHHHHHhhhh-hcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccc
Q 041759          335 FGIGVVYYGMT-LGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDI  413 (525)
Q Consensus       335 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~  413 (525)
                      ..........+ ++.+..|.+..+.+.......+    +.+++.++.+++.||+|+|+.+..+..+..+..+.+......
T Consensus       208 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~----~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~  283 (377)
T PRK11102        208 AGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIV----FLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL  283 (377)
T ss_pred             HHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322222223 4445578888887777776666    777899999999999999999888876654443333222111


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHH-HHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 041759          414 SNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAI-IFAAIFSSVLVAAGSNNEFVSYGVFGLVI  492 (525)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~-~~g~~~~p~i~~~~~~~~~~~~~~~~~~~  492 (525)
                      + .+.....+...+...+.+...+.......|..| +.++++.++.+... .+|..+++++.+.........+...+++.
T Consensus       284 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~  361 (377)
T PRK11102        284 D-LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLAPFTSAWPMVWSMAFCS  361 (377)
T ss_pred             h-hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Confidence            0 012222233333333344444455566777777 67899999887764 57777888776643333333333334444


Q ss_pred             HHHHHHHHhc
Q 041759          493 ICCGFFVICL  502 (525)
Q Consensus       493 ~~~~~~~~~~  502 (525)
                      +++.++.++.
T Consensus       362 ~~~~~~~~~~  371 (377)
T PRK11102        362 ILSILFYLYA  371 (377)
T ss_pred             HHHHHHHHHh
Confidence            4443333333

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=6e-29  Score=246.43  Aligned_cols=324  Identities=15%  Similarity=0.146  Sum_probs=241.1

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      +|.+++++|+   ++.+.+++.+++.++..++++++|+++|| +|||+++..+.++.+++.+++.++++++.+++.|+++
T Consensus        29 ~~~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  104 (401)
T PRK11043         29 FKAIQADLQT---SASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQ  104 (401)
T ss_pred             HHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            7889999999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |++.+...+...+++.|+++++++++..+.......+|..++|.+ +.+.+..+||+.|++.+++.++.. +..++++|+
T Consensus       105 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~  183 (401)
T PRK11043        105 AVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLI-LPTLRLKPS  183 (401)
T ss_pred             HhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HHHHHcCCC
Confidence            999988888888889999999999999999988899999999988 555567899999999888887776 334445543


Q ss_pred             chHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 041759          259 PRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIG  338 (525)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (525)
                      ++    +++.++                                  +     ..++++++++|.++...+..........
T Consensus       184 ~~----~~~~~~----------------------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
T PRK11043        184 KK----ARKQSQ----------------------------------D-----ALTFKQLLKSKTYLGNVLIFAACSAAFF  220 (401)
T ss_pred             CC----ccccch----------------------------------H-----HHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence            21    000000                                  0     0356677777776554443333332222


Q ss_pred             HHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccch
Q 041759          339 VVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGK  418 (525)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (525)
                      ......|.+.++.|.+....+.......+    +.+++.++.+++.||+++|+..........++.+.+.........++
T Consensus       221 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~----~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (401)
T PRK11043        221 AWLTGSPFILEQMGYSPADIGLSYVPQTI----AFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSL  296 (401)
T ss_pred             HHHHHhHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcH
Confidence            23334566667788887777665544444    55688889999999999888766555554444333222111000123


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          419 RMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      ....+...+.+++.+..++.......+..|+ .++++.|+.+.....++..++.+.+.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~~~~~~g~  353 (401)
T PRK11043        297 VPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-ATGKAAALQNTLQLGLCFLASLLVSA  353 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-cChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455566777778888887777777774 68999999999988888888888774

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.97  E-value=1.7e-29  Score=248.40  Aligned_cols=347  Identities=16%  Similarity=0.142  Sum_probs=250.0

Q ss_pred             ccc-eeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHH
Q 041759          100 ALT-IISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFL-SCLTMSVATSLTIFSNNLWIYSLLRF  177 (525)
Q Consensus       100 ~~~-i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~r~  177 (525)
                      +|. +++++|.   +..+.|++.+++.++..+.+++.|+++|| +||||.++. +.++.+++.++.+++++++.+++.|+
T Consensus        20 l~~~l~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   95 (375)
T TIGR00899        20 LSLFLSEEVRA---RPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGV   95 (375)
T ss_pred             HHHHHHcccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            554 6789999   99999999999999999999999999999 999887654 56666777888899999999999999


Q ss_pred             HHhhcccchhhhhheeeEeeecCcchhhH--HhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhhee
Q 041759          178 FSGISRATIGTCTIVLLTEKVGTEWRGLV--GILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIF  254 (525)
Q Consensus       178 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  254 (525)
                      +.|.+.+...|...+++.|+.|+++|++.  .+....+.++|.+++|.+ +.+.+..+||+.|++.++..++..++.+++
T Consensus        96 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  175 (375)
T TIGR00899        96 LLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLF  175 (375)
T ss_pred             HHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            99988888888888888888887777654  577888889999999988 445567899999999998887776556666


Q ss_pred             ecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHH
Q 041759          255 VSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPG  334 (525)
Q Consensus       255 lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  334 (525)
                      +||+|++.    +.+            .+                      +     .+.++.+++++++......++.+
T Consensus       176 ~~~~~~~~----~~~------------~~----------------------~-----~~~~~~~~~~~~~~~~~~~~~~~  212 (375)
T TIGR00899       176 LPSYPRGA----PGA------------LT----------------------R-----LEVRGLLASRDTRLLFVACTLMW  212 (375)
T ss_pred             CCCcccCc----ccc------------cC----------------------c-----chhhhhhcCcchHHHHHHHHHHH
Confidence            88865310    000            00                      0     12223455555444444343333


Q ss_pred             HHHHHHHhhhhhcc-cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccc
Q 041759          335 FGIGVVYYGMTLGI-ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDI  413 (525)
Q Consensus       335 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~  413 (525)
                      ..........|.+. ++.|.+....+...+....    ..+++.++.+++.||++||+.+.++..+..+....+....+ 
T Consensus       213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~----~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-  287 (375)
T TIGR00899       213 GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAG----LEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNS-  287 (375)
T ss_pred             HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH-
Confidence            33333333344444 5578777776666555444    44577889999999999999888777665555444333222 


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHH
Q 041759          414 SNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLV  491 (525)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~  491 (525)
                          .+...+..++.+++.+...+....+..|..|++ ++++.++.+....+|..++|.+.|.  +..++...+.+.+++
T Consensus       288 ----~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~  362 (375)
T TIGR00899       288 ----LWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVM  362 (375)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence                234445556667777777788888888988865 5799999999999999999999985  334566777777777


Q ss_pred             HHHHHHHHHhcc
Q 041759          492 IICCGFFVICLP  503 (525)
Q Consensus       492 ~~~~~~~~~~~~  503 (525)
                      .+++.++..+++
T Consensus       363 ~~~~~~~~~~~~  374 (375)
T TIGR00899       363 LIVALFCLLLIK  374 (375)
T ss_pred             HHHHHHHHheec
Confidence            777666665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.97  E-value=1.4e-29  Score=249.15  Aligned_cols=346  Identities=11%  Similarity=0.014  Sum_probs=247.2

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      .+.+.+|++.   +..+.+++.+.+.+++.++++++|+++|| +|||++++++.+++++++++++++.+.   ++.|+++
T Consensus        26 ~~~~~~~~~~---s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~   98 (393)
T PRK11195         26 AIALLKELHY---PDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLV   98 (393)
T ss_pred             HHHHHHHcCC---cHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            5566789998   89999999999999999999999999999 999999999999999999888877664   7889999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhHhheeecCCc
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESP  259 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp  259 (525)
                      |++.+...|...+++.|++|+++|+++.++.+....+|.++||.++..+.+..|+..+.+.+...++.. +..+.+||+|
T Consensus        99 G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~-~~~~~l~~~~  177 (393)
T PRK11195         99 GIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAA-LFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCc
Confidence            999999999999999999999999999999999999999999999666544568888777766655444 5566788865


Q ss_pred             hHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q 041759          260 RWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGV  339 (525)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  339 (525)
                      ...  ++++++.....+..                                ....+.++++|.++..++...+.+.....
T Consensus       178 ~~~--~~~~~~~~~~~~~~--------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  223 (393)
T PRK11195        178 ARR--PGQSWNPIALLRDF--------------------------------FHACRVLWRDKLGRFSLAGTTLFWGAGAT  223 (393)
T ss_pred             ccc--cccCCCHHHHHHHH--------------------------------HHHHHHHHhCchhHHHHHHHHHHHHHHHH
Confidence            311  00000000000000                                02345677777766555444444444444


Q ss_pred             HHhhhhhccc-ccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccch
Q 041759          340 VYYGMTLGIE-NLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGK  418 (525)
Q Consensus       340 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (525)
                      ..+..+.+.+ .+|.++.+.+.......+    +.+++.++.+++.||.++++.+..+.. .++..+.+.... .    +
T Consensus       224 ~~~~~~~~~~~~lg~s~~~~G~~~~~~~~----g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~-~----~  293 (393)
T PRK11195        224 LRFLVLAWAPVALGITLNQPAYLQAVVAI----GIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQH-S----L  293 (393)
T ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHH----HHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHh-H----H
Confidence            4444454444 368888888888777777    778999999999999888887777643 333333333222 1    3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccCcch-hhhhhHHHHHHHHHHHHHHHHHHhh-ccCchhHHHHHHHHHHHHHH
Q 041759          419 RMRIGLELASLFSAYIAYTVIFIYAIELFPTCV-RNSATSIMRLAIIFAAIFSSVLVAA-GSNNEFVSYGVFGLVIICCG  496 (525)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-r~~~~~~~~~~~~~g~~~~p~i~~~-~~~~~~~~~~~~~~~~~~~~  496 (525)
                      +...+..++.+++.+...+...+...+..|++. +|++.++.+....++..++..+.+. ...+....+.+.+...+++.
T Consensus       294 ~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (393)
T PRK11195        294 LPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVAL  373 (393)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            344455656677777766667777778766654 7999999999999999988888774 23344445554444444443


Q ss_pred             H
Q 041759          497 F  497 (525)
Q Consensus       497 ~  497 (525)
                      .
T Consensus       374 ~  374 (393)
T PRK11195        374 A  374 (393)
T ss_pred             H
Confidence            3

>TIGR00897 2A0118 polyol permease family

Probab=99.97  E-value=7e-29  Score=245.49  Aligned_cols=356  Identities=10%  Similarity=0.015  Sum_probs=246.1

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHH---h-hhhHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTI---F-SNNLWIYSLL  175 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~---~-~~~~~~l~~~  175 (525)
                      .+.+.+|+|+   +..+.|++.+.+.++..+++++.|+++|| +|||+++..+.++.+++++++.   + .++++.+++.
T Consensus        36 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  111 (402)
T TIGR00897        36 LSPFLKALGL---SPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLF  111 (402)
T ss_pred             HHHHHHHhCC---CHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH
Confidence            4556688999   99999999999999999999999999999 9999999999999998877653   3 3578899999


Q ss_pred             HHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHH-HHHHHHH-HhccCCchHHHHHHHHHHHHHHHhHhhe
Q 041759          176 RFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGT-LTLPAIA-YTNRSSSWTIIYLWTSIPTLVYSGLLYI  253 (525)
Q Consensus       176 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~  253 (525)
                      |++.|++.+...+...+++.+++|+++|++++++.+.+.++|. +++|.++ .+.+..||+..++......++..++..+
T Consensus       112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  191 (402)
T TIGR00897       112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALF  191 (402)
T ss_pred             HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988888888888899999999999999999999997 5788884 5566678665555444333333323333


Q ss_pred             eecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHH
Q 041759          254 FVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVP  333 (525)
Q Consensus       254 ~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  333 (525)
                      +.+|.++    +++.++         +  +                +.+      +....+++++++|.++...+..++.
T Consensus       192 ~~~~~~~----~~~~~~---------~--~----------------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  234 (402)
T TIGR00897       192 SNKDIFT----PQHMQT---------R--E----------------KFS------ELGKAATILFTNPNVLLGGMVRIIN  234 (402)
T ss_pred             ccCCCCC----cccccC---------C--c----------------chh------hHHHHHHHHHcChhHHHHHHHHHHH
Confidence            3444211    000000         0  0                000      0012456788888876655554444


Q ss_pred             HHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHH-HHHHHHHHHHHHHHHhcc
Q 041759          334 GFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLL-VLFIISGICSIMAVVAND  412 (525)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~  412 (525)
                      ...........|.+.++.|.+........+...+    +.+++.++.|++.||++||+.+. .+.+...+..+.+...+.
T Consensus       235 ~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~----~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~  310 (402)
T TIGR00897       235 TIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFF----TNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ  310 (402)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH----HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444445677778888888777766666655    77799999999999999887664 333333333333332221


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHH
Q 041759          413 ISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGL  490 (525)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~  490 (525)
                      ....+.....+..++.+++.+...+. .....|..| ++|+++.|+.+....+|+.++|.+.+.  +..+....+++.++
T Consensus       311 ~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~  388 (402)
T TIGR00897       311 HFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAA  388 (402)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            10011233445555666665554443 445566655 579999999999999999999999984  33466777787777


Q ss_pred             HHHHHHHHHHhc
Q 041759          491 VIICCGFFVICL  502 (525)
Q Consensus       491 ~~~~~~~~~~~~  502 (525)
                      +.+++.++..++
T Consensus       389 ~~~i~~~~~~~~  400 (402)
T TIGR00897       389 LYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHh
Confidence            777766665554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.97  E-value=2e-29  Score=250.82  Aligned_cols=347  Identities=14%  Similarity=0.071  Sum_probs=250.1

Q ss_pred             ccceeeccccccchhhh-----hhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 041759          100 ALTIISEWGLECSSAFI-----KGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSL  174 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~-----~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~  174 (525)
                      +|.+.+++|+   +..+     .|++.+++.++..+++++.|+++|| +|||+++..+.++.+++.++..+.++++.+++
T Consensus        37 l~~~~~~~g~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (408)
T PRK09874         37 LPLYVEQLGV---TGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSALGMGIVMVLMGLAQNIWQFLI  112 (408)
T ss_pred             HHHHHHHhCC---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            7888899988   5443     5899999999999999999999999 99999999999999999999999999999999


Q ss_pred             HHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHHHhHhhe
Q 041759          175 LRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNRSSSWTIIYLWTSIPTLVYSGLLYI  253 (525)
Q Consensus       175 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~  253 (525)
                      .|++.|++.+ ..+....++.|++|+++|+++.++...+..+|.+++|.++ .+.+..+||+.|++.+++.++..+...+
T Consensus       113 ~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (408)
T PRK09874        113 LRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLF  191 (408)
T ss_pred             HHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999865 4677778888999999999999999999999999999884 4556679999999998888777655566


Q ss_pred             eecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHH-HHH
Q 041759          254 FVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLA-LMV  332 (525)
Q Consensus       254 ~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~  332 (525)
                      ++||+++.   .++.++ .+                                     .....+.+++++.+..... .+.
T Consensus       192 ~~~~~~~~---~~~~~~-~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  230 (408)
T PRK09874        192 CIRENFQP---VSKKEM-LH-------------------------------------MREVVTSLKNPKLVLSLFVTTLI  230 (408)
T ss_pred             HhccCccc---ccchhh-hH-------------------------------------HHHHHHhCcCCchHHHHHHHHHH
Confidence            66664310   000000 00                                     0122234455554332222 222


Q ss_pred             HHHHHHHHHhhhhhcccccCChhH----HHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHH
Q 041759          333 PGFGIGVVYYGMTLGIENLGFDIY----LGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAV  408 (525)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~  408 (525)
                      ............+.+..+.+.+..    ..+.+.....+    +.+++.+..+++.||++||+.+..+..+..+..+...
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l----~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~  306 (408)
T PRK09874        231 IQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGV----AALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMS  306 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence            222222222223333333222221    12223333333    5557888899999999999999888877776665554


Q ss_pred             HhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHH
Q 041759          409 VANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYG  486 (525)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~  486 (525)
                      .....     ....+..++.+++.+...+...+...+..|++.+++.+++.+....+|..++|.+.|.  ...++...|.
T Consensus       307 ~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~  381 (408)
T PRK09874        307 FVQTP-----LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFL  381 (408)
T ss_pred             HhccH-----HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHH
Confidence            44322     3455566677788888888888888888999999999999999999999999999985  3346777888


Q ss_pred             HHHHHHHHHHHHHHh
Q 041759          487 VFGLVIICCGFFVIC  501 (525)
Q Consensus       487 ~~~~~~~~~~~~~~~  501 (525)
                      +.+++.+++.+..++
T Consensus       382 ~~~~~~l~~~~~~~~  396 (408)
T PRK09874        382 VTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            887777776665544

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=7.7e-29  Score=246.44  Aligned_cols=343  Identities=13%  Similarity=0.069  Sum_probs=252.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhHH
Q 041759           42 AILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPA  121 (525)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~~  121 (525)
                      +.++++.++..+++.......                                     .|.+++++|+   ++.+.|++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~-------------------------------------~p~i~~~~~~---s~~~~gl~~   67 (438)
T PRK10133         28 FALLCSLFFLWAVANNLNDIL-------------------------------------LPQFQQAFTL---TNFQAGLIQ   67 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHhCC---CHHHHHHHH
Confidence            455666777888888888888                                     9999999999   999999999


Q ss_pred             HHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHhhcccchhhhhheeeEeee
Q 041759          122 ASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLT---IFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKV  198 (525)
Q Consensus       122 s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  198 (525)
                      +.+.+++.+++++.|+++|| +|||+++..+.++++++++++   .++++++.++++|+++|+|.|...+....++.|+.
T Consensus        68 ~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~  146 (438)
T PRK10133         68 SAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG  146 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence            99999999999999999999 999999999999999999875   46789999999999999999999999999999987


Q ss_pred             cCcchhhHHhHHHHHHHHHHHHHHHHHHhcc--C-------------------------CchHHHHHHHH-HHHHHHHhH
Q 041759          199 GTEWRGLVGILDSFFFTIGTLTLPAIAYTNR--S-------------------------SSWTIIYLWTS-IPTLVYSGL  250 (525)
Q Consensus       199 ~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~--~-------------------------~~wr~~f~~~~-~~~~~~~~~  250 (525)
                      ++++|.+.+++.+..+.+|..+++.++..+.  .                         .+||++|+... +..++..++
T Consensus       147 ~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~  226 (438)
T PRK10133        147 PESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI  226 (438)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777899999999999999998853211  0                         25666665433 333333323


Q ss_pred             hheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHH
Q 041759          251 LYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLAL  330 (525)
Q Consensus       251 ~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  330 (525)
                      ....+||.+.    + +.++           .+.                       .+.....++++++|.++...+..
T Consensus       227 ~~~~~p~~~~----~-~~~~-----------~~~-----------------------~~~~~~~~~ll~~~~~~~~~l~~  267 (438)
T PRK10133        227 MLTKFPALQS----D-NHSD-----------AKQ-----------------------GSFSASLSRLARIRHWRWAVLAQ  267 (438)
T ss_pred             HHhcCCCCCc----c-cccc-----------ccc-----------------------cchhhhHHHHHhCchHHHHHHHH
Confidence            2333444210    0 0000           000                       00012456788888866555444


Q ss_pred             HHHHHHHHHH-Hhhhhhccc-ccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHH
Q 041759          331 MVPGFGIGVV-YYGMTLGIE-NLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAV  408 (525)
Q Consensus       331 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~  408 (525)
                      ++........ .|..+++.+ ..|.++...+.......+    +.++|+++.+++.||+++|+++..+..+..+.+++..
T Consensus       268 ~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~----~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~  343 (438)
T PRK10133        268 FCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMV----CFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA  343 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            4433333322 233334343 578999888888887777    8889999999999999999998888777766665554


Q ss_pred             HhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          409 VANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      +.+..      .......+.+++.+..+|..++...+..|++ .+++.++... ..+|+.++|.+.|.
T Consensus       344 ~~~~~------~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~  403 (438)
T PRK10133        344 FAGGH------VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGF  403 (438)
T ss_pred             HcCCh------HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHH
Confidence            43322      2345567788999999999999999998865 4677777753 55677788887774

>PRK12382 putative transporter; Provisional

Probab=99.97  E-value=9e-29  Score=244.39  Aligned_cols=338  Identities=13%  Similarity=0.087  Sum_probs=237.9

Q ss_pred             ccc-eeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHH--------hhhhHH
Q 041759          100 ALT-IISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTI--------FSNNLW  170 (525)
Q Consensus       100 ~~~-i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~--------~~~~~~  170 (525)
                      +|. +++|+|+   +..+.|++.+++.+++.++++++|+++|| +|||++++.+.++..++.+...        ..++++
T Consensus        38 l~~~l~~~lg~---s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (392)
T PRK12382         38 IPLFVHHDLGF---GNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFA  113 (392)
T ss_pred             hhHHHHHhcCC---cHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHH
Confidence            554 6789999   99999999999999999999999999999 9999999999888777654322        136889


Q ss_pred             HHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHHHh
Q 041759          171 IYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNRSSSWTIIYLWTSIPTLVYSG  249 (525)
Q Consensus       171 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~  249 (525)
                      .++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|+++ .+....|||+.+.+..+..++.. 
T Consensus       114 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~-  192 (392)
T PRK12382        114 LLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW-  192 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-
Confidence            9999999999999988888888999999999999999999999999999999985 45566799998776655544433 


Q ss_pred             HhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHH
Q 041759          250 LLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLA  329 (525)
Q Consensus       250 ~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  329 (525)
                      ......||.+.      ++ +         + +                             .+.++.++  ..+...+.
T Consensus       193 ~~~~~~~~~~~------~~-~---------~-~-----------------------------~~~~~~~~--~~~~~~~~  224 (392)
T PRK12382        193 AFNGTVRKVPA------HA-G---------E-R-----------------------------PSLWSVVG--LIWKPGLG  224 (392)
T ss_pred             HHHHhccCCCC------Cc-c---------c-C-----------------------------chHHHHHH--HHHHhHHH
Confidence            22222232210      00 0         0 0                             01111111  01111111


Q ss_pred             HHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHH
Q 041759          330 LMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVV  409 (525)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~  409 (525)
                      .++............+.++++.+.+..  ........+    +.+++.++.+++.||+|+|+.+..+..+..++.+++..
T Consensus       225 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~  298 (392)
T PRK12382        225 LALQGVGFAVIGTFVSLYFASKGWAMA--GFTLTAFGG----AFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL  298 (392)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhcCCchh--HHHHHHHHH----HHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH
Confidence            111122222222333444445454432  222222333    45588899999999999999998888888877766555


Q ss_pred             hccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHH
Q 041759          410 ANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGV  487 (525)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~  487 (525)
                      ..+     .....+..++.+++.+...+.......|.+|+++|+++.|+.+....+|..++|.+.+.  +..++...+.+
T Consensus       299 ~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~  373 (392)
T PRK12382        299 APT-----AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLA  373 (392)
T ss_pred             ccc-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            432     23445566667777777778777888899999999999999999999999999999985  33467777777


Q ss_pred             HHHHHHHHHHHHHh
Q 041759          488 FGLVIICCGFFVIC  501 (525)
Q Consensus       488 ~~~~~~~~~~~~~~  501 (525)
                      .+++.+++.++.+.
T Consensus       374 ~~~~~~~~~~~~~~  387 (392)
T PRK12382        374 GAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHHh
Confidence            77777666655443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=2.4e-28  Score=241.53  Aligned_cols=324  Identities=14%  Similarity=0.100  Sum_probs=238.1

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      +|.+.+++|+   ++.+.+++.+++.++..+++++.|+++|| +|||+++.++.++.+++.++..++++++.+++.|++.
T Consensus        31 ~~~i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  106 (394)
T PRK11652         31 IADMARDLNV---REGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQ  106 (394)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            8899999999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |++.+...+....+..|.+++++|+++.++.+.+..+|..++|.++ .+.+..+||+.|++.++..++..++..+++||+
T Consensus       107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (394)
T PRK11652        107 GLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPET  186 (394)
T ss_pred             HhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            9999988888888889999999999999999999999999999884 455567999999998887776654555667776


Q ss_pred             chHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 041759          259 PRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIG  338 (525)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (525)
                      ++.   +++.++       .                                ...+++++++|.++...+..+.......
T Consensus       187 ~~~---~~~~~~-------~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (394)
T PRK11652        187 RPA---DARRTR-------V--------------------------------LASYRTLLSNRRFNCYLLMLIGTLAGIA  224 (394)
T ss_pred             Ccc---ccchhH-------H--------------------------------HHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence            421   000000       0                                0356677788876655444433333333


Q ss_pred             HHHhhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHH-HHHHHHHHhcccccc
Q 041759          339 VVYYGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISG-ICSIMAVVANDISNA  416 (525)
Q Consensus       339 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  416 (525)
                      ......+.+.++ +|.+....+.......+    +.+++.++.+++.||.+++........... +...........   
T Consensus       225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  297 (394)
T PRK11652        225 VFEACSGVLMGAVLGLSSMTVSILFILPIP----AAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVM---  297 (394)
T ss_pred             HHHHhChHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence            333333444444 78787776666555444    666777888888888873332222222111 211111111111   


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc
Q 041759          417 GKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG  477 (525)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~  477 (525)
                      .........++.+++.+...+...++..|..|+ .++++.++.+....+|..+++.+.+..
T Consensus       298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~lg~~~~~~~~~~~  357 (394)
T PRK11652        298 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-LAGTAGALLGGLQNIGSGLAALLSAML  357 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            123445556677777788888888888898874 679999999999999999999998853

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.97  E-value=2.6e-28  Score=241.08  Aligned_cols=321  Identities=15%  Similarity=0.128  Sum_probs=230.1

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      +|.+.+++|.   +..+.++..+.+.++..+++++.|+++|| +|||++++.+.++.+++.+++.++++++.+++.|+++
T Consensus        26 lp~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~  101 (392)
T PRK10473         26 LPRIAADLNA---SEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQ  101 (392)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            8999999999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYT-NRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~-~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |++.+...+...+++.|++|+++|+++.++.+....+|.+++|.++.. ....+||+.|++.++..++..++...++||+
T Consensus       102 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~  181 (392)
T PRK10473        102 GIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKET  181 (392)
T ss_pred             HhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999988554 4567999999999888877775656667775


Q ss_pred             chHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 041759          259 PRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIG  338 (525)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (525)
                      +..   +++.+               .+                  .     .+..++.++++.++...+...+......
T Consensus       182 ~~~---~~~~~---------------~~------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (392)
T PRK10473        182 RPA---RAPAA---------------SS------------------K-----PRENSESLLNRFFLSRLVITTLSVTVIL  220 (392)
T ss_pred             CCc---ccCCc---------------cc------------------h-----HHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            320   00000               00                  0     0233456677765554444333332222


Q ss_pred             HHHhhhhhc-ccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccc
Q 041759          339 VVYYGMTLG-IENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAG  417 (525)
Q Consensus       339 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (525)
                      ......+++ .+++|.+....+.......+    +.+++.++.+++.||+|||+.+.++..+..++.+.+......    
T Consensus       221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~----  292 (392)
T PRK10473        221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAG----VSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSH----  292 (392)
T ss_pred             HHHHhCHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            222223333 34578887776666665555    666899999999999999999998888877777766655433    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchh-hhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          418 KRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVR-NSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r-~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      + .......+...+.+..++..  ...+..|.+.| +.+.++......+|..+++.+.+.
T Consensus       293 ~-~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~  349 (392)
T PRK10473        293 A-VSLFGITLICAGFSVGFGVA--MSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAV  349 (392)
T ss_pred             H-HHHHHHHHHHHHHHHHhHHH--HHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 22333333333333333333  22334444333 444444444445566666666653

>PRK10054 putative transporter; Provisional

Probab=99.97  E-value=2.1e-28  Score=240.90  Aligned_cols=341  Identities=12%  Similarity=0.053  Sum_probs=249.0

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      .+.+++++|+   +..+.|++.+.+.++..+++++.|+++|| +|||++++++.++.+++.++.+++++++.++++|++.
T Consensus        31 ~~~l~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (395)
T PRK10054         31 TIYLSRQYSL---SVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALI  106 (395)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4456788999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhHhheeecCCc
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESP  259 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp  259 (525)
                      |.+.+...+...++..|..|+++|+++.++.....++|.+++|.++..+...+||.+|++.++..++..++..+++||++
T Consensus       107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        107 NCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence            98888888888899999999999999999999999999999999966554579999999988887776544555555532


Q ss_pred             hHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q 041759          260 RWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGV  339 (525)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  339 (525)
                      +    +++.++ ++                                     ..+.++.+++|.++...+..++.......
T Consensus       187 ~----~~~~~~-~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  224 (395)
T PRK10054        187 K----AIATET-GS-------------------------------------VWSPSVLLQDKALLWFTCSGFLASFVSGA  224 (395)
T ss_pred             c----ccccch-hh-------------------------------------hhhhhhhccCceehHHHHHHHHHHHHHHH
Confidence            1    000000 00                                     01234567777766655555444433322


Q ss_pred             HHhhhhhcc---cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcccccc
Q 041759          340 VYYGMTLGI---ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNA  416 (525)
Q Consensus       340 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (525)
                      .....+.+.   .+.+.+....+.......+    ..+......+++.||.++|+.+..+..+..++...+....+.   
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---  297 (395)
T PRK10054        225 FASCISQYVMVVADSDFAEKVVAVVLPVNAA----MVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNS---  297 (395)
T ss_pred             hhhhHHHHHHHhcccchHHHHHHHHHHhhhh----heeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchH---
Confidence            111122222   3345555555555555444    555667788899999999999888887777777666543222   


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHH
Q 041759          417 GKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIIC  494 (525)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~  494 (525)
                       +....+...+.+++.....|.....+.+..|++.++++.+..+ ...+|..++|.+.|.  +..+....+.+.+.+..+
T Consensus       298 -~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~  375 (395)
T PRK10054        298 -LLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVA  375 (395)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHH
Confidence             3344556677777777777888888999999999999988654 567899999999985  333455555554444433


Q ss_pred             H
Q 041759          495 C  495 (525)
Q Consensus       495 ~  495 (525)
                      +
T Consensus       376 ~  376 (395)
T PRK10054        376 A  376 (395)
T ss_pred             H
Confidence            3

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.97  E-value=9e-29  Score=244.87  Aligned_cols=329  Identities=19%  Similarity=0.187  Sum_probs=226.7

Q ss_pred             ccceeeccccccchhhhhhhHHHH-----HHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHH----
Q 041759          100 ALTIISEWGLECSSAFIKGLPAAS-----HFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLW----  170 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~-----~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~----  170 (525)
                      .+.+.+++.... ++.+.+++.+.     ..++..+++++.|+++|| +|||+++.++.++.+++.++++++++++    
T Consensus        16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~   93 (394)
T TIGR00883        16 AVLVFHTFFPPS-GDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIGLLPSYATIGI   93 (394)
T ss_pred             HHHHHHHhcCCC-CChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhCCChhhhHH
Confidence            555555543210 44555554433     334445789999999999 9999999999999999999999998875    


Q ss_pred             ----HHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc---------cCCchHHHH
Q 041759          171 ----IYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN---------RSSSWTIIY  237 (525)
Q Consensus       171 ----~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~---------~~~~wr~~f  237 (525)
                          .+++.|+++|++.+...+....++.|++++++|++..++.+.+..+|.+++++++..+         ...+||+.|
T Consensus        94 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~  173 (394)
T TIGR00883        94 WAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPF  173 (394)
T ss_pred             HHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHH
Confidence                5889999999999999999999999999999999999999999999999998875432         357999999


Q ss_pred             HHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhh
Q 041759          238 LWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIREL  317 (525)
Q Consensus       238 ~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  317 (525)
                      ++.+++.++.. +....+||+|++...+       +      + .+ +                   .     ..+.++.
T Consensus       174 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~------~-~~-~-------------------~-----~~~~~~~  213 (394)
T TIGR00883       174 LVSAVLVLIGL-YLRRNLEETPVFEKAQ-------E------K-HK-K-------------------K-----RGPIRET  213 (394)
T ss_pred             HHHHHHHHHHH-HHHHhcCCChhHHHHH-------h------c-cc-c-------------------c-----cCCHHHH
Confidence            98887766655 4445566654321000       0      0 00 0                   0     0234455


Q ss_pred             hcchh--HHHHHHHHHHHHHHHHHHHhhhhhcc-cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHH
Q 041759          318 FVRRW--ALERTLALMVPGFGIGVVYYGMTLGI-ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLL  394 (525)
Q Consensus       318 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~  394 (525)
                      +++++  ++......+.............+.+. ++.+.+....+.......+    +.+++.++.+++.||+|||+.+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~g~l~dr~g~~~~~~  289 (394)
T TIGR00883       214 LTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLI----LFFITIPLSGALSDRIGRRPVLI  289 (394)
T ss_pred             HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH----HHHHHHHHHHHHHHHhchHHHHH
Confidence            55544  23323333333333333333445555 5577777777766666665    66688999999999999999877


Q ss_pred             HHHHHHHHHH-HHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHH-HHHHHHHHHHHH
Q 041759          395 VLFIISGICS-IMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMR-LAIIFAAIFSSV  472 (525)
Q Consensus       395 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~-~~~~~g~~~~p~  472 (525)
                      ....+..+.. ..+......  .+........++.+++.+...+...++..|.+|++.|+++.++.. ....+|..++|.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~  367 (394)
T TIGR00883       290 IFTVLAALLAVPLLMALLDS--GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPY  367 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHH
Confidence            5555444333 222222111  123344455666677777788889999999999999999999854 445678889999


Q ss_pred             HHhh
Q 041759          473 LVAA  476 (525)
Q Consensus       473 i~~~  476 (525)
                      +.|.
T Consensus       368 ~~g~  371 (394)
T TIGR00883       368 IAAA  371 (394)
T ss_pred             HHHH
Confidence            9885

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.97  E-value=2.1e-31  Score=247.96  Aligned_cols=359  Identities=16%  Similarity=0.203  Sum_probs=249.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      .+.++++..+++.+|...+..+                                     .+.+++.||+   +++..|++
T Consensus        34 ~l~il~~vnlmny~Dr~~iagv-------------------------------------~~~v~~~fni---~~s~~Gll   73 (493)
T KOG1330|consen   34 TLVILCLVNLMNYADRYTIAGV-------------------------------------LKEVQTYFNI---SDSELGLL   73 (493)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhh-------------------------------------hHHHHHhcCC---Cchhccch
Confidence            6888999999999999999999                                     9999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      .+.+.+.+.+++|++|+++|| |.||+++.+|.+++.++.++++++..||+++++|.+.|+|.+...|.++++++|.+|.
T Consensus        74 ~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~  152 (493)
T KOG1330|consen   74 QTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD  152 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcc
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHHHHhcc-C-CchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhh
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAIAYTNR-S-SSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSL  278 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l~~~~~-~-~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~  278 (525)
                      ++|++++++++.+..+|..+|.+.+..+. . ..|||.|+..+++++++.++..++++|+++     +..++..      
T Consensus       153 ~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~------  221 (493)
T KOG1330|consen  153 DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVD------  221 (493)
T ss_pred             hhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc-----ccccccc------
Confidence            99999999999999999999998865543 2 349999999999999999888888888653     1111100      


Q ss_pred             CCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhh----hcccccCCh
Q 041759          279 SPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMT----LGIENLGFD  354 (525)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  354 (525)
                       + .++.                  .+...+..++.+.+.+++.+....+......+..+...|..|    ++.+-.+.+
T Consensus       222 -~-~~~~------------------~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~  281 (493)
T KOG1330|consen  222 -G-ENKM------------------VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFD  281 (493)
T ss_pred             -c-CCcC------------------CCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCc
Confidence             0 0000                  000111123455566655544444444444443332222222    222224455


Q ss_pred             hHHHHHHHHHhcccccccCchhHHHHHHHHHhh----cChhHH----HHHHHHHHHHHHHHHHhccccccchhHHHHHHH
Q 041759          355 IYLGVVFNALLEIPNLASTIPSFFLTFFLIQKW----NRKSSL----LVLFIISGICSIMAVVANDISNAGKRMRIGLEL  426 (525)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~----g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (525)
                      ......+.++...    ++.+|.+++|.++||+    .+-...    ..+.....++...+...+..........+++.+
T Consensus       282 ~~~~~ifg~vt~~----~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~  357 (493)
T KOG1330|consen  282 HNATLIFGGVTCA----GGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFL  357 (493)
T ss_pred             cccchhhhhHHHh----hchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            5555666666666    5556666777777774    321111    112222222222222222110011222233333


Q ss_pred             HHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHH-HHHHHHHHHHHh
Q 041759          427 ASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAI-IFAAIFSSVLVA  475 (525)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~-~~g~~~~p~i~~  475 (525)
                      +.-......++...-+..|+.|++.|.++.++...+. .+|.+-+|++.|
T Consensus       358 ~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivG  407 (493)
T KOG1330|consen  358 VGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVG  407 (493)
T ss_pred             HHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceeh
Confidence            3333333344566677889999999999999998776 455666676766

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.97  E-value=3.2e-28  Score=240.00  Aligned_cols=343  Identities=10%  Similarity=0.060  Sum_probs=246.2

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      .+.+++++|+   +..+.|++.+.+.++..+.+++.|+++|| +|||+++..+.++.+++.+++.++++++.+++.|+++
T Consensus        34 ~~~~~~~~g~---s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  109 (400)
T PRK11646         34 SIRFVDQLGW---AAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILS  109 (400)
T ss_pred             HHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3456789999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhHhheeecCCc
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESP  259 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp  259 (525)
                      |++.+...+...+++.|++|+++|+++.++.....++|..+||.++..+..++||+.|++.++..++..++..+++||.+
T Consensus       110 g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~  189 (400)
T PRK11646        110 GLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYK  189 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            99999888999999999999999999999999999999999999955444789999999988877766534444555421


Q ss_pred             hHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q 041759          260 RWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGV  339 (525)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  339 (525)
                      .    +++.++                                  .     ..++++++++|.++...+..+........
T Consensus       190 ~----~~~~~~----------------------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (400)
T PRK11646        190 L----STVRTP----------------------------------V-----REGMTRVLRDKRFVTYVLTLTGYYMLAVQ  226 (400)
T ss_pred             c----cccchh----------------------------------h-----HHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            0    000000                                  0     02456677787755443333222222222


Q ss_pred             HHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHH-HhhcChhHHHHHHHHHHHHHHHHHHhccccccch
Q 041759          340 VYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLI-QKWNRKSSLLVLFIISGICSIMAVVANDISNAGK  418 (525)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (525)
                      .....|.+.++.+.++...+...+...+    +.+.+....+++. ||++.++.+..+..+.+++.+++...++.     
T Consensus       227 ~~~~~p~~~~~~~~~~~~~g~l~~~~~~----~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~-----  297 (400)
T PRK11646        227 VMLMLPIMVNDIAGSPSAVKWMYAIEAC----LSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNL-----  297 (400)
T ss_pred             HHHhhhhhHHhhcCCchHHHHHHHHHHH----HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhH-----
Confidence            2344577766655555555555544433    2223333344444 45666666677777777666655544332     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhccC-----c-hhHHHHHHHHHH
Q 041759          419 RMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSN-----N-EFVSYGVFGLVI  492 (525)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~~~-----~-~~~~~~~~~~~~  492 (525)
                      ....+..++.+.+.+...|...+++.+..|++.|+++.|+.+....+|..++|.+.|...+     + ....+...+++.
T Consensus       298 ~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~  377 (400)
T PRK11646        298 QQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIG  377 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHH
Confidence            2344444556666667777888999999999999999999999999999999999985211     1 344555545555


Q ss_pred             HHHHHH
Q 041759          493 ICCGFF  498 (525)
Q Consensus       493 ~~~~~~  498 (525)
                      +++.+.
T Consensus       378 ~~~~~~  383 (400)
T PRK11646        378 LITLLA  383 (400)
T ss_pred             HHHHHH
Confidence            444443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.97  E-value=4.6e-28  Score=235.85  Aligned_cols=324  Identities=21%  Similarity=0.309  Sum_probs=268.2

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      .|.+.+++|.   +..+.+++.+.+.++..+++++.|+++|| +|||+.+.++.++..++.++..+.++++.+++.|++.
T Consensus        22 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   97 (352)
T cd06174          22 LPLLAEDLGL---SASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLL   97 (352)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            8888999999   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |++.+...+...+++.|++|+++|++.+++.+.+..+|..++|.++ .+.+..+||+.+++.+++.++.. +...+++  
T Consensus        98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--  174 (352)
T cd06174          98 GLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLA-LLLLFLL--  174 (352)
T ss_pred             HcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHH--
Confidence            9999999999999999999999999999999999999999999984 45556689999999888887766 3322211  


Q ss_pred             chHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 041759          259 PRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIG  338 (525)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  338 (525)
                                                                                    |.++...+..+.......
T Consensus       175 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~  192 (352)
T cd06174         175 --------------------------------------------------------------RLLLLLALAFFLLSFGYY  192 (352)
T ss_pred             --------------------------------------------------------------HHHHHHHHHHHHHHhHHH
Confidence                                                                          222333333444444444


Q ss_pred             HHHhhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChh-HHHHHHHHHHHHHHHHHHhcccccc
Q 041759          339 VVYYGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKS-SLLVLFIISGICSIMAVVANDISNA  416 (525)
Q Consensus       339 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  416 (525)
                      ......+.+.++ .+.+..+.+.......+    +.+++.++.+++.||++||+ .+..+..+..++.+......+    
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----  264 (352)
T cd06174         193 GLLTYLPLYLQEVLGLSAAEAGLLLSLFGL----GGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS----  264 (352)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc----
Confidence            444445555555 37787777777777766    77799999999999999999 888888888888877766543    


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHH
Q 041759          417 GKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIIC  494 (525)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~  494 (525)
                       +....+..++.+++.+...+....+..|..|+++|++..++.+....+|..++|.+.+.  +..++...+.+.+++.++
T Consensus       265 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i  343 (352)
T cd06174         265 -LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL  343 (352)
T ss_pred             -HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHH
Confidence             34566778888888888899999999999999999999999999999999999999985  345677778888777777


Q ss_pred             HHHHHHh
Q 041759          495 CGFFVIC  501 (525)
Q Consensus       495 ~~~~~~~  501 (525)
                      +.+..++
T Consensus       344 ~~i~~~~  350 (352)
T cd06174         344 AALLLLL  350 (352)
T ss_pred             HHHHhee
Confidence            6665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=4.9e-28  Score=238.56  Aligned_cols=340  Identities=13%  Similarity=0.022  Sum_probs=251.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhHH
Q 041759           42 AILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPA  121 (525)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~~  121 (525)
                      +.++++..+..++........                                     .|.+++++|+   +..+.|++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l-------------------------------------~~~~~~~~~~---s~~~~g~l~   44 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPM-------------------------------------VPQFQQAFTL---TAFQAALVQ   44 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHH-------------------------------------HHHHHHHhCC---CHHHHHHHH
Confidence            456667777777777777777                                     8999999999   999999999


Q ss_pred             HHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHhhcccchhhhhheeeEeee
Q 041759          122 ASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIF---SNNLWIYSLLRFFSGISRATIGTCTIVLLTEKV  198 (525)
Q Consensus       122 s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  198 (525)
                      +.+.+++.+++++.|++.|| +|||++++++.++++++.++...   .++++.+++.|++.|+|.|...+....++.+..
T Consensus        45 s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~  123 (410)
T TIGR00885        45 SAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMG  123 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHC
Confidence            99999999999999999999 99999999999999999988654   368999999999999999999999999999999


Q ss_pred             cCcchhhHHhHHHHHHHHHHHHHHHHHHhc-c--------------------------CCchHHHHHHHHHHHHHHHhHh
Q 041759          199 GTEWRGLVGILDSFFFTIGTLTLPAIAYTN-R--------------------------SSSWTIIYLWTSIPTLVYSGLL  251 (525)
Q Consensus       199 ~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~-~--------------------------~~~wr~~f~~~~~~~~~~~~~~  251 (525)
                      |+++|++.+++.+...++|..++|.++..+ .                          ..+||++|++.+++.++..++.
T Consensus       124 ~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       124 PESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999884432 1                          1359999999888777665232


Q ss_pred             h-eeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHH
Q 041759          252 Y-IFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLAL  330 (525)
Q Consensus       252 ~-~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  330 (525)
                      . ..+||.++     ++ ++         +                  ..    .     ....++++|+|.++...+..
T Consensus       204 ~~~~~p~~~~-----~~-~~---------~------------------~~----~-----~~~~~~~~~~~~~~~~~l~~  241 (410)
T TIGR00885       204 MLTKMPALNH-----SD-AK---------Q------------------IS----F-----SASLSRLARIRHYREGVIAQ  241 (410)
T ss_pred             HHhcCCCCCc-----cc-cc---------c------------------cc----c-----hhhHHHHHhChhHHHHHHHH
Confidence            2 11332110     00 00         0                  00    0     01344677888766655555


Q ss_pred             HHHHHHHHHHHhhhhhccccc--CChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHH
Q 041759          331 MVPGFGIGVVYYGMTLGIENL--GFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAV  408 (525)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~  408 (525)
                      ++...........++.+.++.  +.+........+....    +..+|+++++++.||+++|+.+.++..+..+..++..
T Consensus       242 f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~----~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~  317 (410)
T TIGR00885       242 FFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMV----IFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSI  317 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            554444333333344444433  3333333323333223    4458999999999999999999888888888877777


Q ss_pred             HhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          409 VANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      ..+..      .......+.+++.+..+|..++...+..+++.+..+.++...  .+|+.+.|.+.|.
T Consensus       318 ~~~~~------~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~  377 (410)
T TIGR00885       318 FAGGH------VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGF  377 (410)
T ss_pred             HcCCh------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHH
Confidence            65443      335666677788889999999999999998765445554444  3899999999985

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.96  E-value=2.6e-27  Score=238.84  Aligned_cols=356  Identities=13%  Similarity=0.087  Sum_probs=249.5

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccC-----CchHH-HHHHHHHHHHHHHHHHhh---hhHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSL-----GRKNL-LFLSCLTMSVATSLTIFS---NNLW  170 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~-----Grk~~-~~~~~~~~~i~~~~~~~~---~~~~  170 (525)
                      +|...++.|.   +..++|.+ +.....+ ++.+++|+++|| +     |||+. ++.+.++.+++..+.++.   ++++
T Consensus        35 l~~~l~~~g~---~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr-~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~  108 (491)
T PRK11010         35 LQAWMTVENI---DLKTIGFF-SLVGQAY-VFKFLWSPLMDR-YTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLR  108 (491)
T ss_pred             HHHHHHhCCC---CHHHHHHH-HHHHHHH-HHHHHHHHHHHc-ccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHH
Confidence            7888888899   88889986 4444444 588999999999 9     99885 667777777777777775   4788


Q ss_pred             HHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHH-hcc-CCchHHHHHHHHHHHHHHH
Q 041759          171 IYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAY-TNR-SSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       171 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~-~~~-~~~wr~~f~~~~~~~~~~~  248 (525)
                      .+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++. +.+ ..|||..|++.+++.++..
T Consensus       109 ~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~  188 (491)
T PRK11010        109 WLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCI  188 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988844 444 3699999999998877766


Q ss_pred             hHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHH
Q 041759          249 GLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTL  328 (525)
Q Consensus       249 ~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  328 (525)
                       +..+++||+++..   +++++.++   +                                ...+++++++++..+....
T Consensus       189 -l~~~~~~e~~~~~---~~~~~~~~---~--------------------------------~~~~l~~~~~~~~~~~~ll  229 (491)
T PRK11010        189 -IATLLAPEPTDTI---PVPKTLEQ---A--------------------------------VVAPLRDFFGRNNAWLILL  229 (491)
T ss_pred             -HHHHhcCCCcccc---ccccchhh---h--------------------------------HHHHHHHHHcCcCHHHHHH
Confidence             4444578864210   00000000   0                                0024566777776555444


Q ss_pred             HHHHHHHHHHHH-HhhhhhcccccCChhHHHHHHHH-HhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHH
Q 041759          329 ALMVPGFGIGVV-YYGMTLGIENLGFDIYLGVVFNA-LLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIM  406 (525)
Q Consensus       329 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~  406 (525)
                      ..++........ .+..+++.++.|++....+.... ...+    +.++|.+++|++.||+++|+.+.++.++.++..+.
T Consensus       230 ~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i----~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~  305 (491)
T PRK11010        230 LIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLL----ATIVGALYGGILMQRLSLFRALMIFGILQGVSNAG  305 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            444333333332 34445555668888888777653 4344    66699999999999999988877766655554433


Q ss_pred             HHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHH
Q 041759          407 AVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVS  484 (525)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~  484 (525)
                      +...... ..+........++..++.+...+..+++..+..+++.+++..++.+....+|..+++.+.|.  +..++...
T Consensus       306 ~~~l~~~-~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~  384 (491)
T PRK11010        306 YWLLSIT-DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTF  384 (491)
T ss_pred             HHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence            3221111 01222333344444444555556677888888999899999999999999998877777774  33456677


Q ss_pred             HHHHHHHHHHHHHHHHhccCC
Q 041759          485 YGVFGLVIICCGFFVICLPET  505 (525)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~  505 (525)
                      |.+.+++.+++.+.....+++
T Consensus       385 f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        385 YLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            777777777776666555543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=6e-28  Score=223.54  Aligned_cols=353  Identities=14%  Similarity=0.094  Sum_probs=274.9

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN---NLWIYSLLR  176 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~r  176 (525)
                      .+.+++|+|+   |+.|.+++.++..+...+..++.|.+.|| ||.|++..++.++..+-.+..+++.   ++|++++.+
T Consensus        37 ~~~i~~~~~L---S~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~g  112 (417)
T COG2223          37 GVFIKSDFGL---SEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIG  112 (417)
T ss_pred             HhhhccccCC---CHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHH
Confidence            7788899999   99999999999999999999999999999 9999999999999999999999985   455999999


Q ss_pred             HHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHh-ccCCc---hHHHHHHHHHHHHHHHhHhh
Q 041759          177 FFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYT-NRSSS---WTIIYLWTSIPTLVYSGLLY  252 (525)
Q Consensus       177 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~-~~~~~---wr~~f~~~~~~~~~~~~~~~  252 (525)
                      ++.|++.+ .+.+...+++.++||+++|.++++.. ..++|..+..+++-. +...+   ||....+..+..++..+..+
T Consensus       113 ll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~  190 (417)
T COG2223         113 LLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAW  190 (417)
T ss_pred             HHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999977 78899999999999999999999999 888888776666432 23346   99999999988888887778


Q ss_pred             eeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHH
Q 041759          253 IFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMV  332 (525)
Q Consensus       253 ~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  332 (525)
                      +...|.|......++..                                         ...++.++++++.|...+..+.
T Consensus       191 ~~~~d~p~~r~~~~~~~-----------------------------------------~~~~~~v~~~~~~W~lsllY~~  229 (417)
T COG2223         191 LGMNDVPEHRASVKPQL-----------------------------------------PAQLKAVFSNKDTWLLSLLYFA  229 (417)
T ss_pred             HHhCCChhhhccccccc-----------------------------------------hhHHHHHhcCcchHHHHHHHHH
Confidence            87777663210000000                                         0246677888887776666555


Q ss_pred             HHHHH-HHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhc
Q 041759          333 PGFGI-GVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVAN  411 (525)
Q Consensus       333 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~  411 (525)
                      ..-+. .+..+...++..+++.+...++.......+    .+.+.++++|+++||+|.++++.+.+..++++..+.....
T Consensus       230 tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~----~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~  305 (417)
T COG2223         230 TFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPL----IGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFL  305 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH----HHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccc
Confidence            54443 344454455666789998888777777666    5558899999999999999999999999999988888775


Q ss_pred             cccc--cchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh---ccCchhHHHH
Q 041759          412 DISN--AGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA---GSNNEFVSYG  486 (525)
Q Consensus       412 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~---~~~~~~~~~~  486 (525)
                      ....  .+....+...+....+.+......+-+++..+|++ .|.+.|+....+.+|++.-|...+.   ....+...|+
T Consensus       306 ~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~  384 (417)
T COG2223         306 TGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFM  384 (417)
T ss_pred             cccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHH
Confidence            3211  22334555566666777777778888888888875 5899999999999999999999884   2234677788


Q ss_pred             HHHHHHHHHHHHHHhccC
Q 041759          487 VFGLVIICCGFFVICLPE  504 (525)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~  504 (525)
                      ++..+.+++.+..+....
T Consensus       385 ~~~~~~~~a~v~~~~~y~  402 (417)
T COG2223         385 LLLAFYLVALVLTWALYA  402 (417)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888887777776655533

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.96  E-value=2.8e-28  Score=238.86  Aligned_cols=327  Identities=15%  Similarity=0.084  Sum_probs=227.1

Q ss_pred             ccc-eeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHH
Q 041759          100 ALT-IISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN-NLWIYSLLRF  177 (525)
Q Consensus       100 ~~~-i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~  177 (525)
                      .|. +++++|+   ++.+.+++.+++.+++.+++++.|+++|| +|||+.++++.++.+++.+++++++ +++.+++.|+
T Consensus        24 ~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   99 (366)
T TIGR00886        24 AVQMIKDDLGL---STAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRL   99 (366)
T ss_pred             hhHHHHHHhCC---CHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            785 9999999   99999999999999999999999999999 9999999999999999999999999 9999999999


Q ss_pred             HHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHH-hcc----------CCchHHHH-HHHHHHHH
Q 041759          178 FSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAY-TNR----------SSSWTIIY-LWTSIPTL  245 (525)
Q Consensus       178 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~-~~~----------~~~wr~~f-~~~~~~~~  245 (525)
                      ++|++.+. .+....++.|++|+++|+++.++...+.++|..+++.++. +..          ..+||+.| +..++..+
T Consensus       100 ~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  178 (366)
T TIGR00886       100 FIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILL  178 (366)
T ss_pred             HHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Confidence            99999664 5667888999999999999999998777777776665532 211          34899999 44455555


Q ss_pred             HHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHH
Q 041759          246 VYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALE  325 (525)
Q Consensus       246 ~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  325 (525)
                      +..++...+.+|+|+.    +++++ +.   +  . .+..             ...+++     .....++.+++|+++.
T Consensus       179 ~~~~~~~~~~~~~~~~----~~~~~-~~---~--~-~~~~-------------~~~~~~-----~~~~~~~~~~~~~~~~  229 (366)
T TIGR00886       179 LPALLIFFVGADTPPG----KPATG-KL---S--F-KGAR-------------WSVGTG-----ALGDQLKVFRDRHTWI  229 (366)
T ss_pred             HHHHHHHHhcccCCcc----cccch-hc---c--c-cccc-------------ccccch-----hHHHHHHHHhccchhh
Confidence            5443555566776531    00000 00   0  0 0000             000000     0024556777777665


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcc-cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHH
Q 041759          326 RTLALMVPGFGIGVVYYGMTLGI-ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICS  404 (525)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~  404 (525)
                      ..+..+.............+.+. +.+|.+....+.......+    ..+++.++.+++.||+|+|+.+..+......+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       230 LALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGL----LGSLARPLGGAISDRLGGARKLLMSFLGVAMGA  305 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----HHHHHhhccchHHHhhccchhHHHHHHHHHHHH
Confidence            55444443333333333344444 4468887777766666665    666889999999999999888877776666665


Q ss_pred             HHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHH
Q 041759          405 IMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFA  466 (525)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g  466 (525)
                      .++...... +.+.....+...+..++.+...+..+....+..| +++|++.|+.+....+|
T Consensus       306 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       306 FLVVLGLVS-PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHhcCCC-cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            555443221 0013334444555556666666777888888887 57899999988877654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.96  E-value=2.3e-26  Score=226.84  Aligned_cols=345  Identities=16%  Similarity=0.166  Sum_probs=227.2

Q ss_pred             cceeeccccccchhhhhhhHHHHHHH-HHHHhHHhhHhcccccCCchHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 041759          101 LTIISEWGLECSSAFIKGLPAASHFT-GCLLGIVFLATLADSSLGRKNLL-FLSCLTMSVATSLTIFSNNLWIYSLLRFF  178 (525)
Q Consensus       101 ~~i~~~~~~~~~s~~~~g~~~s~~~l-g~~~~~~~~G~l~dr~~Grk~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  178 (525)
                      +.+++++|+   +..+.|++.+...+ +..++.++.|+ +|| +||||.+ ..+.++.+++.++.+++++++.+++.+.+
T Consensus        40 ~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  114 (393)
T PRK15011         40 IFLTDEVHA---RPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVF  114 (393)
T ss_pred             HHHHhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            346889999   99999999876544 66666666666 999 9999875 45666667888888899999988766655


Q ss_pred             HhhcccchhhhhheeeEeeecCcch--hhHHhHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHHHHHHHHHHHhHhheee
Q 041759          179 SGISRATIGTCTIVLLTEKVGTEWR--GLVGILDSFFFTIGTLTLPAIAYT-NRSSSWTIIYLWTSIPTLVYSGLLYIFV  255 (525)
Q Consensus       179 ~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~l~~~l~~~-~~~~~wr~~f~~~~~~~~~~~~~~~~~l  255 (525)
                      .|...+...|....++.|+.++++|  +...++.+.+.++|.+++|+++.. .+..|||..|++.++..++..++.++++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  194 (393)
T PRK15011        115 LSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFL  194 (393)
T ss_pred             HHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhc
Confidence            5555556778888888887776655  344578889999999999999554 4578999999999988887775667778


Q ss_pred             cCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHH
Q 041759          256 SESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGF  335 (525)
Q Consensus       256 pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  335 (525)
                      ||.++.    ++.+          + .              +.             ...++  +.+..+..+......+.
T Consensus       195 ~~~~~~----~~~~----------~-~--------------~~-------------~~~~~--~~~~~~~~~~~~~~~~~  230 (393)
T PRK15011        195 PSMRKE----LPLA----------T-G--------------TL-------------EAPRR--NRRDTLLLFVICTLMWG  230 (393)
T ss_pred             CccCCC----Cccc----------c-c--------------cc-------------ccccc--ccccHHHHHHHHHHHHH
Confidence            876420    0000          0 0              00             00000  01111222222222222


Q ss_pred             HHHHHHhhhhhcc-cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcccc
Q 041759          336 GIGVVYYGMTLGI-ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDIS  414 (525)
Q Consensus       336 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (525)
                      .........|.+. ++++.+....+.+.+...+    +.+++.++.|++.||++||+.+..+.....+......... . 
T Consensus       231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~----~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~-  304 (393)
T PRK15011        231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAG----LEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH-S-  304 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh-h-
Confidence            2222223345444 4578887777666655444    5567889999999999999987776655554443332222 2 


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHH
Q 041759          415 NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVI  492 (525)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~  492 (525)
                         .....+..++.+++.+...+....+..|..|+ .++++.++.+....+|..++|.+.|.  +..++...+.+.+++.
T Consensus       305 ---~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~  380 (393)
T PRK15011        305 ---PAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMI  380 (393)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence               22334444445555555556666777888886 48999999998889999999999985  3235566666666666


Q ss_pred             HHHHHHHHhccC
Q 041759          493 ICCGFFVICLPE  504 (525)
Q Consensus       493 ~~~~~~~~~~~~  504 (525)
                      +++.+..+..||
T Consensus       381 ~~~~~~~~~~~~  392 (393)
T PRK15011        381 IATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHhhcC
Confidence            666666665543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.96  E-value=1e-26  Score=228.33  Aligned_cols=340  Identities=10%  Similarity=-0.011  Sum_probs=254.0

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHH----HHHHHHHHHHHHHHHhhhhHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLL----FLSCLTMSVATSLTIFSNNLWIYSLL  175 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~----~~~~~~~~i~~~~~~~~~~~~~l~~~  175 (525)
                      +|.+.+++|+   +..++|++.+++.++..++++++|+++|| +|||+..    ..+..+..+  ....++++++.+++.
T Consensus        27 l~~~l~~~g~---s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~  100 (382)
T TIGR00902        27 FPAWLKGIGL---GEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIA  100 (382)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHH
Confidence            7888999999   99999999999999999999999999999 9985433    222222222  244467899999999


Q ss_pred             HHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhhee
Q 041759          176 RFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIF  254 (525)
Q Consensus       176 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  254 (525)
                      |+++|.+.+...|...++..++  +++|++..+....+.++|.+++|.+ +.+.+.+|||..|++.++..++.. +.. .
T Consensus       101 ~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~-~  176 (382)
T TIGR00902       101 IGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGF-L  176 (382)
T ss_pred             HHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHH-H
Confidence            9999999988888888887654  4778999999999999999999987 666677899999988766533333 333 2


Q ss_pred             ecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHH
Q 041759          255 VSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPG  334 (525)
Q Consensus       255 lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  334 (525)
                      ++|+++    ++++++            ++            +.     ++     ..+.++++|+|+++...+..++..
T Consensus       177 ~~~~~~----~~~~~~------------~~------------~~-----~~-----~~~~~~~l~~~~~~~~l~~~~l~~  218 (382)
T TIGR00902       177 IKPTIP----PKDAIP------------ED------------ES-----QG-----DSAFIALLKNPMNLRFLAAVCLIQ  218 (382)
T ss_pred             cCCCCC----CCcccc------------cc------------cc-----cc-----chhHHHHHcChHHHHHHHHHHHHH
Confidence            333210    000000            00            00     00     035678899998877777666666


Q ss_pred             HHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcccc
Q 041759          335 FGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDIS  414 (525)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (525)
                      ......+...+.+.++.|.+....+...+...+    +.+++.++.+++.||+|+|+.+.++.++..+....+.+.++. 
T Consensus       219 ~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~----~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-  293 (382)
T TIGR00902       219 GAHAAYYGFSAIYWQAAGISASATGLLWGIGVL----AEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAF-  293 (382)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHH----HHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhH-
Confidence            665555555566677789998888877776666    777889999999999999999999999999988877665443 


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHH-HHHHHHHHHHHHHhh--ccCchhHHHHHHHHH
Q 041759          415 NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRL-AIIFAAIFSSVLVAA--GSNNEFVSYGVFGLV  491 (525)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~-~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~  491 (525)
                          +..+...++.++..+...+....++.+. |++.+++++++.+. ...+|..++|.+.|.  +..+ ...|...+++
T Consensus       294 ----~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~~~~~~~~~~  367 (382)
T TIGR00902       294 ----PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-AGTFVFMAII  367 (382)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHH
Confidence                4566778888999999999999999988 99899999999864 457889999999985  2223 3556666666


Q ss_pred             HHHHHHH
Q 041759          492 IICCGFF  498 (525)
Q Consensus       492 ~~~~~~~  498 (525)
                      .+++.++
T Consensus       368 ~~~~~~~  374 (382)
T TIGR00902       368 AAAAFFL  374 (382)
T ss_pred             HHHHHHH
Confidence            6655444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00896 CynX cyanate transporter

Probab=99.96  E-value=4.6e-27  Score=228.97  Aligned_cols=319  Identities=14%  Similarity=0.095  Sum_probs=236.1

Q ss_pred             CCccccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 041759           96 PTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLL  175 (525)
Q Consensus        96 p~~~~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  175 (525)
                      |.  +|.+++++|+   +..+.|++.+++.++..+++++.|+++|| +|||+++.++.++..++.+.. .+++++.+++.
T Consensus        21 ~~--lp~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~   93 (355)
T TIGR00896        21 PL--LPQIRSALGM---SFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SAPGTALLFAG   93 (355)
T ss_pred             cc--HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence            55  8999999999   99999999999999999999999999999 999999999999988888877 77899999999


Q ss_pred             HHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHH-hccCC--chHHHHHHHHHHHHHHHhHhh
Q 041759          176 RFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAY-TNRSS--SWTIIYLWTSIPTLVYSGLLY  252 (525)
Q Consensus       176 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~-~~~~~--~wr~~f~~~~~~~~~~~~~~~  252 (525)
                      |++.|++.+...+....++.|+++ ++|++++++.+.+..+|..+++.++. +....  +||+.|.+.++..++.. .  
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~-~--  169 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL-L--  169 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-H--
Confidence            999999999888888888888886 68999999999999999999988744 33332  49999987776554433 2  


Q ss_pred             eeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHH
Q 041759          253 IFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMV  332 (525)
Q Consensus       253 ~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  332 (525)
                      .++|+.++      +.           + .++.              .    .+     ...++++|+|..+...+...+
T Consensus       170 ~~~~~~~~------~~-----------~-~~~~--------------~----~~-----~~~~~~~~~~~~~~~~~~~~~  208 (355)
T TIGR00896       170 AWIPQVRR------RV-----------A-ANQT--------------T----TR-----LTPVRIWRSPLAWQVTVFFGL  208 (355)
T ss_pred             HHhhhhcc------cc-----------C-CCCC--------------C----CC-----CCCchhhcCHhHHHHHHHHHH
Confidence            22343211      00           0 0000              0    00     133456777776554444443


Q ss_pred             HHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHhc
Q 041759          333 PGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKW-NRKSSLLVLFIISGICSIMAVVAN  411 (525)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~  411 (525)
                      ...........+|.+.++.|.+....+...+...+    +.+++.++.+++.||+ +||+.+.++..+.+++.+.+.+..
T Consensus       209 ~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~----~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (355)
T TIGR00896       209 QSGLYYSLIGWLPAILISHGASAATAGSLLALMQL----AQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP  284 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh
Confidence            33333333444576677788888888888887777    8889999999999999 566666777777777666665544


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhhhcccc-CcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          412 DISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELF-PTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      ..    . . ....++.+++.+..++...+...+.. +++.++...++.+....++..++|.+.|.
T Consensus       285 ~~----~-~-~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~  344 (355)
T TIGR00896       285 MH----G-L-WAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV  344 (355)
T ss_pred             hh----H-H-HHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33    2 1 12345667888887777666665444 45677888999898889999999999885

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.95  E-value=2.6e-26  Score=227.27  Aligned_cols=354  Identities=10%  Similarity=-0.002  Sum_probs=240.4

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCc-hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGR-KNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFF  178 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Gr-k~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  178 (525)
                      .+.+++++|+   +..++|++.+++.++..++++++|+++|| +|| |+++.++.++.+++..+..+.++++.+++.|++
T Consensus        26 ~~~l~~~~g~---s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  101 (418)
T TIGR00889        26 GSYMSKTLHF---SGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLA  101 (418)
T ss_pred             HHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            5677788999   99999999999999999999999999999 965 778888888888888888899999999999999


Q ss_pred             Hhhcccchhhhhheee----E----eeecCcchhhHHhHHHHHHHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHHHh
Q 041759          179 SGISRATIGTCTIVLL----T----EKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRS-SSWTIIYLWTSIPTLVYSG  249 (525)
Q Consensus       179 ~G~~~~~~~~~~~~~i----~----~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~-~~wr~~f~~~~~~~~~~~~  249 (525)
                      .|++.+...+...++.    .    |......|.|..+      .+|.+++|.++..+.. ..|+ +|++.++..++.. 
T Consensus       102 ~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~-  173 (418)
T TIGR00889       102 NSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG-  173 (418)
T ss_pred             HHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH-
Confidence            9998776666555432    1    2233334445444      3677777777544432 2354 4556666666555 


Q ss_pred             HhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHH
Q 041759          250 LLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLA  329 (525)
Q Consensus       250 ~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  329 (525)
                      +..+++||+|+-   ++++++..   ++.                          .     ..+.++++|+|.++..++.
T Consensus       174 ~~~~~~~e~~~~---~~~~~~~~---~~~--------------------------~-----~~~~~~~~k~~~~~~~~~~  216 (418)
T TIGR00889       174 VFALTLPDIPVA---KSTAKMSI---KVM--------------------------L-----GLDAFILFKNKRMAIFFFF  216 (418)
T ss_pred             HHHhcCCCCCCC---ccccccCH---HHH--------------------------h-----hhhHHHHhcCCCeeeHHHH
Confidence            445678886520   00000000   000                          0     0134467788876665555


Q ss_pred             HHHHHHHHHHHHhhhhhcccccCChh--------HHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHH
Q 041759          330 LMVPGFGIGVVYYGMTLGIENLGFDI--------YLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISG  401 (525)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~  401 (525)
                      .++........+...+.+.++.|.++        ...+...++..+    +.+++.++.+++.||+|+|+++.++.++..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i----~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~  292 (418)
T TIGR00889       217 SMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQF----SEIFFILTIPFFLKRFGIKKVMLLSLVAWA  292 (418)
T ss_pred             HHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            55544433333333354555555332        444555565555    666889999999999999999999999888


Q ss_pred             HHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHH-HHHHHHHHHHHHHHhh--cc
Q 041759          402 ICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMR-LAIIFAAIFSSVLVAA--GS  478 (525)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~-~~~~~g~~~~p~i~~~--~~  478 (525)
                      +...++...... ...+...++..++.+++.+...+....++.|.+|++.|++++|+.+ ....+|..++|.+.|.  +.
T Consensus       293 v~~~l~~~~~~~-~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~  371 (418)
T TIGR00889       293 LRFGFFAYGDPE-YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEK  371 (418)
T ss_pred             HHHHHHHHcCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            877666553221 0012334556677777777777888889999999999999999997 5678899999999984  21


Q ss_pred             ------CchhHHHHHHHHHHHHHHHH-HHhccCCCC
Q 041759          479 ------NNEFVSYGVFGLVIICCGFF-VICLPETRG  507 (525)
Q Consensus       479 ------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  507 (525)
                            .++...|.+.+++.+++.++ .++++|+++
T Consensus       372 ~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       372 MFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             hccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence                  23566777777766665544 455566543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.95  E-value=4.6e-27  Score=233.56  Aligned_cols=388  Identities=14%  Similarity=0.124  Sum_probs=289.6

Q ss_pred             cccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-H
Q 041759           99 TALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLR-F  177 (525)
Q Consensus        99 ~~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r-~  177 (525)
                      +.+.++++|+-   +..+++|+.++......+..++.+.+.|| +|.|++.+.|.++..+|.++.+|++++|++++.. +
T Consensus        68 ~~~~~~~~f~~---s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gv  143 (509)
T KOG2504|consen   68 LFEELMDYFGS---SSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGV  143 (509)
T ss_pred             hHHHHHHHhCC---CccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            38899999999   89999999999999999999999999999 9999999999999999999999999999888877 8


Q ss_pred             HHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeec
Q 041759          178 FSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVS  256 (525)
Q Consensus       178 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lp  256 (525)
                      +.|+|.|+.+.....++..++ +++|+.+.++...+.++|.++-|.+ .++++.+|||+.+++.+.+.+-..+.....-|
T Consensus       144 i~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  144 IGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999777 5779999999999999999886655 88889999999999999888777744455445


Q ss_pred             CCchHhhhcCCHHHHHHHHHhhCC--------CcCCccchhhhh--hhccCCCCcccccccccchhhh----hhhhcchh
Q 041759          257 ESPRWLFMQGRQEEAVEVIKSLSP--------IKDSNQLSLSLV--SAVSFGHEPAASSKESSFLSSI----RELFVRRW  322 (525)
Q Consensus       257 esp~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~  322 (525)
                      .++...  + +.++..+.......        ....++.+....  ....+.++.+++.+........    .++++++.
T Consensus       223 ~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~  299 (509)
T KOG2504|consen  223 LSPPKK--P-NEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPK  299 (509)
T ss_pred             CCcCCC--c-hhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCch
Confidence            443211  1 10000000000000        000000000000  0000000000000000001122    57889988


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhc--ChhHHHHHHHHH
Q 041759          323 ALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWN--RKSSLLVLFIIS  400 (525)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g--~~~~~~~~~~~~  400 (525)
                      ++...+...+..++.......++.+.++.+.+......+.+..++    ..++++++.|++.|+..  ++....++.+..
T Consensus       300 fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi----~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  300 FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGV----SDIIGRIILGLLADKPGIRALVLFLLTLLIA  375 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHH----hhhhhhhhhhhhcCccccchHHHHHHHHHHH
Confidence            777777777777777777888888888999999999999999988    88899999999999987  445556666666


Q ss_pred             HHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc---
Q 041759          401 GICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG---  477 (525)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~---  477 (525)
                      +++.+.+......     ..++...++.+++.+.........+.|+.+.+.-..+.|+...+..++.+++|.+.|..   
T Consensus       376 gl~~~~~p~~~~~-----~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~  450 (509)
T KOG2504|consen  376 GLARLFLPFATTY-----VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDI  450 (509)
T ss_pred             HHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeec
Confidence            6666555554443     57778888888998888888888999999999999999999999999999999999852   


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhcc
Q 041759          478 SNNEFVSYGVFGLVIICCGFFVICLP  503 (525)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (525)
                      ..++...|...+++.+++..+++..+
T Consensus       451 tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  451 TGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             cCCeeeehhhcChHHHHHHHHHHHhH
Confidence            23477888888888888877666555

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.95  E-value=1.3e-25  Score=225.33  Aligned_cols=327  Identities=13%  Similarity=0.072  Sum_probs=236.9

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccc---cCCch-HHHHHHHHHHHHHHHHHHhhhh------H
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADS---SLGRK-NLLFLSCLTMSVATSLTIFSNN------L  169 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr---~~Grk-~~~~~~~~~~~i~~~~~~~~~~------~  169 (525)
                      .+.+.+++|+   ++.++|++.++..+..++..++.|+++||   |+||| +.++++....+++.+++.+.++      .
T Consensus        23 ~~~~~~~~g~---s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (437)
T TIGR00792        23 LFFYTDVLGL---SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL   99 (437)
T ss_pred             HHHHHHccCC---CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence            5677788999   99999999999999999999999999997   36874 4677888888888888877653      5


Q ss_pred             HHHHHHHHHHhhcccchhhhhheeeEeeec-CcchhhHHhHHHHHHHHHHHHHHHH-HHhc-------cCCchHHHHHHH
Q 041759          170 WIYSLLRFFSGISRATIGTCTIVLLTEKVG-TEWRGLVGILDSFFFTIGTLTLPAI-AYTN-------RSSSWTIIYLWT  240 (525)
Q Consensus       170 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~-------~~~~wr~~f~~~  240 (525)
                      +.+++.+++.+++.+...+...++..|..+ +++|++..++.+.+..+|.++++.+ +.+.       ...+||+.+.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~  179 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL  179 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence            677888899999988888888888899874 6899999999988888887766544 2222       246899999999


Q ss_pred             HHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcc
Q 041759          241 SIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVR  320 (525)
Q Consensus       241 ~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  320 (525)
                      +++.++..++.++++||+++.     +.++         + ++                       +.+....+++++++
T Consensus       180 ~~l~~~~~~~~~~~~~e~~~~-----~~~~---------~-~~-----------------------~~~~~~~~~~l~~~  221 (437)
T TIGR00792       180 ALIGVVSLIICFFGTKERYSE-----IPKN---------I-EK-----------------------KLSLKQIFKALFKN  221 (437)
T ss_pred             HHHHHHHHHHHHcCCEecCCC-----CCcc---------c-cc-----------------------CCCHHHHHHHHhCC
Confidence            998888775666777775310     0000         0 00                       00001356778889


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHH
Q 041759          321 RWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIIS  400 (525)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~  400 (525)
                      |.++...+..++............+++.+....+............+    +.+++.++.+++.||+|+|+.+.++..+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~ii~~~~~~~l~~r~g~~~~~~~~~~~~  297 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIV----AGLIGVLLFPRLVKKFGRKILFAGGILLM  297 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            88776665555555544433333444444321233334444444444    66689999999999999999999998888


Q ss_pred             HHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccC-------cchhhhhhHHHHHHHHHHHHHHHHH
Q 041759          401 GICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFP-------TCVRNSATSIMRLAIIFAAIFSSVL  473 (525)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~~~~~~~~~~g~~~~p~i  473 (525)
                      +++.+.+.+....    .....+..++.+++.+...+..+++.+|..+       ++.+|...|+.+....+|..+++.+
T Consensus       298 ~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i  373 (437)
T TIGR00792       298 VLGYLIFFFAGSN----LPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFL  373 (437)
T ss_pred             HHHHHHHHHcchh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            8777666554322    3345556677778888888888889888765       4567899999999999999999888


Q ss_pred             Hh
Q 041759          474 VA  475 (525)
Q Consensus       474 ~~  475 (525)
                      .|
T Consensus       374 ~g  375 (437)
T TIGR00792       374 VG  375 (437)
T ss_pred             HH
Confidence            77

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.95  E-value=6e-26  Score=254.61  Aligned_cols=332  Identities=14%  Similarity=-0.013  Sum_probs=239.5

Q ss_pred             cceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHH
Q 041759          101 LTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTI---FSNNLWIYSLLRF  177 (525)
Q Consensus       101 ~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~---~~~~~~~l~~~r~  177 (525)
                      +.+..+++.. ++....+++.+++.++++++++++|+++|| +|||++++++.++.+++.++..   .+++++.++++|+
T Consensus        34 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  111 (1146)
T PRK08633         34 NTLIKAYDGS-EQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTF  111 (1146)
T ss_pred             HHHHHHcCcc-cHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            3344445541 145568999999999999999999999999 9999999998877666555443   4578999999999


Q ss_pred             HHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc-cC---------CchHHHHHHHHHHHHHH
Q 041759          178 FSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN-RS---------SSWTIIYLWTSIPTLVY  247 (525)
Q Consensus       178 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~-~~---------~~wr~~f~~~~~~~~~~  247 (525)
                      ++|++.+...+...+++.|++|+++|++++++...+..+|.++|++++.++ ..         .+|++.+.+..+...+.
T Consensus       112 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (1146)
T PRK08633        112 LLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVL  191 (1146)
T ss_pred             HHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999995544 32         24555554444444444


Q ss_pred             HhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHH
Q 041759          248 SGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERT  327 (525)
Q Consensus       248 ~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (525)
                      .++..+.+||+|.....+.+. +.          ..                      ........++.+++++.++..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~-~~----------~~----------------------~~~~~~~~~~~l~~~~~~~~~~  238 (1146)
T PRK08633        192 GLIFAYRLPKVPAAAPEVFDK-KK----------YL----------------------FPKLLWRNLKLLRSDRVLWLAI  238 (1146)
T ss_pred             HHHHHhcCcCCCCCCcccccc-cc----------cc----------------------cHHHHHHHHHHHhcCcHHHHHH
Confidence            335556678765321100000 00          00                      0000013566778888766655


Q ss_pred             HHHHHHHHHHHHHHhhhhhc-ccccCChhH-HHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHH
Q 041759          328 LALMVPGFGIGVVYYGMTLG-IENLGFDIY-LGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSI  405 (525)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~  405 (525)
                      +..++.++........++.+ ...+|.+.. ..+.+.+...+    +.+++.++.+++.||+++++.+.++.++.+++.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~i----g~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~  314 (1146)
T PRK08633        239 IGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAI----GIGIGSLLAGRLSGRHIELGLVPLGALGLALSLF  314 (1146)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHHHhCCceEccchhHHHHHHHHHHH
Confidence            55555544443333334444 455787777 67777766666    7779999999999999998888888887777776


Q ss_pred             HHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          406 MAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      ++.+..+     ....++..++.+++.+...+...+++.+..|++.||+++|+.+++..+|.++++.+.+.
T Consensus       315 ~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~  380 (1146)
T PRK08633        315 LLPTAPS-----LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTL  380 (1146)
T ss_pred             HHHHhhh-----HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            6665443     23555666777788787778888999999999999999999999999888777766653

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.95  E-value=2.4e-25  Score=220.36  Aligned_cols=352  Identities=14%  Similarity=0.113  Sum_probs=238.5

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccC-----CchH-HHHHHHHHHHHHHHHHHhh---hhHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSL-----GRKN-LLFLSCLTMSVATSLTIFS---NNLW  170 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~-----Grk~-~~~~~~~~~~i~~~~~~~~---~~~~  170 (525)
                      +|.+-++.|+   +..++|++..+...  .+..+++|+++|| +     |||| ++.++.++.+++..+.++.   .+++
T Consensus        22 ~~~~l~~~g~---~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~   95 (402)
T PRK11902         22 LQAWMTVEGL---DIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALW   95 (402)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHH
Confidence            8888888899   99999999777765  6899999999999 9     8875 7888888888888887776   4578


Q ss_pred             HHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHH-hccC-CchHHHHHHHHHHHHHHH
Q 041759          171 IYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAY-TNRS-SSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       171 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~-~~~~-~~wr~~f~~~~~~~~~~~  248 (525)
                      .+++..++.++..+...+...+++.|+.|+++|+++.++...+..+|.++++.++. +... .|||..|++.++..++..
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~  175 (402)
T PRK11902         96 PLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGA  175 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence            88888888899999999999999999999999999999999999999999888744 4443 499999999888877665


Q ss_pred             hHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHH
Q 041759          249 GLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTL  328 (525)
Q Consensus       249 ~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  328 (525)
                       +..+++||+++.   +++.++.++   +.                                ...+++++++|.++..++
T Consensus       176 -l~~~~~~e~~~~---~~~~~~~~~---~~--------------------------------~~~~~~l~~~~~~~~~l~  216 (402)
T PRK11902        176 -LTTLWAPEPEVP---ARPPRSLGE---AV--------------------------------VGPLRDFFSRRGAWALLL  216 (402)
T ss_pred             -HHHHhcCCCccc---ccccchhHH---HH--------------------------------HHHHHHHHhCcCHHHHHH
Confidence             445567775431   000000000   00                                135677889988666555


Q ss_pred             HHHHHHHHHHHH-HhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHH
Q 041759          329 ALMVPGFGIGVV-YYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMA  407 (525)
Q Consensus       329 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~  407 (525)
                      ..++........ .+..+++.++.|.+....+...+....   ++.+++.++.+++.||+++|+.+..+..+..+..+.+
T Consensus       217 ~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~---~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~  293 (402)
T PRK11902        217 LIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGL---AATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGY  293 (402)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            544444333222 233455556688888777766543222   1355889999999999999998877776665554433


Q ss_pred             HHhccccccchhHHHHHH----HHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCch
Q 041759          408 VVANDISNAGKRMRIGLE----LASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNE  481 (525)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~  481 (525)
                      ......+ .+........    +..++..+...+....++.+.+|.+.+    +..+....++..+++.+.|.  +..++
T Consensus       294 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~  368 (402)
T PRK11902        294 WVLAVTP-KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGW  368 (402)
T ss_pred             HHHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            2211110 1122333333    234445555566777777777776554    44444455566544445553  34466


Q ss_pred             hHHHHHHHHHHHHHHHHHHhccC
Q 041759          482 FVSYGVFGLVIICCGFFVICLPE  504 (525)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~  504 (525)
                      ...|.+.+++.+++.++.+..+.
T Consensus       369 ~~~f~~~~~~~~~~~~~~~~~~~  391 (402)
T PRK11902        369 PGFYLMTVVIALPGLALLWLMRG  391 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            77777777777776665554443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.95  E-value=1.6e-25  Score=220.09  Aligned_cols=339  Identities=12%  Similarity=0.022  Sum_probs=239.6

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCch----HHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRK----NLLFLSCLTMSVATSLTIFSNNLWIYSLL  175 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk----~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  175 (525)
                      +|.+.+|+|.   |..++|++.+++.++..++++++|+++|| +|||    +.+.++..+.  .......++++|.+++.
T Consensus        27 l~~~l~~~g~---s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~  100 (382)
T PRK11128         27 WSVWLKGQGY---TPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVA  100 (382)
T ss_pred             HHHHHHhcCC---CHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHH
Confidence            7788899999   99999999999999999999999999999 9984    3333222222  22333446889999999


Q ss_pred             HHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHH-hccCCchHHHHHHHHHHHHHHHhHhhee
Q 041759          176 RFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAY-TNRSSSWTIIYLWTSIPTLVYSGLLYIF  254 (525)
Q Consensus       176 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~-~~~~~~wr~~f~~~~~~~~~~~~~~~~~  254 (525)
                      |++.|++.+...+...+++.++  +++|++..+....+.++|.++||+++. +.+.+|||..|++.++..++.. +..++
T Consensus       101 ~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~-~~~~~  177 (382)
T PRK11128        101 IGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML-LGQLL  177 (382)
T ss_pred             HHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHc
Confidence            9999999988888887777765  456888888899999999999999955 4566799999988876555544 33344


Q ss_pred             ecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHH
Q 041759          255 VSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPG  334 (525)
Q Consensus       255 lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  334 (525)
                      .||.++    +++++            +             +. +    +.     ..++++++|+|.++...+..++..
T Consensus       178 ~~~~~~----~~~~~------------~-------------~~-~----~~-----~~~~~~i~~~~~~~~~~~~~~l~~  218 (382)
T PRK11128        178 RPTIMP----QGESR------------Q-------------QE-S----AG-----WPAWKALLKEPTVWRFLLCVSLLQ  218 (382)
T ss_pred             cCCCCC----ccccc------------c-------------cc-c----cc-----cchHHHHHcChhHHHHHHHHHHHH
Confidence            454311    00000            0             00 0    00     136778999998777666666555


Q ss_pred             HHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcccc
Q 041759          335 FGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDIS  414 (525)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (525)
                      ......+...+.+.++.|.+....+...+...+    +.++..++.+++.||+++|+.+..+..+.++..+++...++  
T Consensus       219 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~----~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~--  292 (382)
T PRK11128        219 GSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVV----AEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTA--  292 (382)
T ss_pred             HHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhh--
Confidence            554444444455666788887777777666555    67788899999999999999999888888887766655433  


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHH-HHHHHHHHHHHHhhc--cCchhHHHHHHHHH
Q 041759          415 NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLA-IIFAAIFSSVLVAAG--SNNEFVSYGVFGLV  491 (525)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~-~~~g~~~~p~i~~~~--~~~~~~~~~~~~~~  491 (525)
                         .+..++..++.+++.+...+....+..+. +++++++..+..+.. ..+|..++|.+.|..  ..+. ..+...+++
T Consensus       293 ---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~  367 (382)
T PRK11128        293 ---LPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALV  367 (382)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHH
Confidence               23556677777888887778777887776 455568888877644 466778999999853  2233 445555555


Q ss_pred             HHHHHH
Q 041759          492 IICCGF  497 (525)
Q Consensus       492 ~~~~~~  497 (525)
                      .+++.+
T Consensus       368 ~~~~~~  373 (382)
T PRK11128        368 ALPALF  373 (382)
T ss_pred             HHHHHH
Confidence            544433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.95  E-value=4.7e-26  Score=221.99  Aligned_cols=317  Identities=16%  Similarity=0.116  Sum_probs=229.1

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccC-----CchHH-HHHHHHHHHHHHHHHHhh---hhHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSL-----GRKNL-LFLSCLTMSVATSLTIFS---NNLW  170 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~-----Grk~~-~~~~~~~~~i~~~~~~~~---~~~~  170 (525)
                      .|.+.+|+|+   |..++|+.... .+...+ .+++|+++|| +     ||||. ++.+.++.++..++.++.   .+.+
T Consensus        11 ~~~~~~~~g~---s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr-~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~   84 (356)
T TIGR00901        11 LPYWLRSKNV---SLKTIGFFSLV-GLPYSL-KFLWSPLVDT-VYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLP   84 (356)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHH-HHHHHH-HHHHHHHHhc-ccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHH
Confidence            7899999999   99999999755 455555 8999999999 7     89886 567777888877777776   5677


Q ss_pred             HHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH-HhccCCc--------hHHHHHHHH
Q 041759          171 IYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNRSSS--------WTIIYLWTS  241 (525)
Q Consensus       171 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~--------wr~~f~~~~  241 (525)
                      .+.+..++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++ .+....+        ||..|++.+
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~a  164 (356)
T TIGR00901        85 LLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTA  164 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHH
Confidence            7888888889999989999999999999999999999999999999999999885 4445556        999999999


Q ss_pred             HHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcch
Q 041759          242 IPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRR  321 (525)
Q Consensus       242 ~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  321 (525)
                      +..++..++.++..||+++.   +++.++.++   +.                                ...++++++++
T Consensus       165 i~~l~~~~~~~~~~~e~~~~---~~~~~~~~~---~~--------------------------------~~~~~~~~~~~  206 (356)
T TIGR00901       165 LLILPGLLVTLFLAKEPQED---ASVPKPLTQ---AV--------------------------------LKPIREFFQRK  206 (356)
T ss_pred             HHHHHHHHHHHHhccCCCcc---cccchhHHH---HH--------------------------------HHHHHHHHHhc
Confidence            88877663444445664321   000000000   00                                02455666666


Q ss_pred             h---HHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhc-ccccccCchhHHHHHHHHHhhcChhHHHHHH
Q 041759          322 W---ALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLE-IPNLASTIPSFFLTFFLIQKWNRKSSLLVLF  397 (525)
Q Consensus       322 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~  397 (525)
                      .   .+...+..++............+.+.++.|.+..+.+....... +    +.+++.++++++.||+|+|+.+..+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~----~~~~g~~~~g~l~~r~g~~~~l~~~~  282 (356)
T TIGR00901       207 NMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLL----GAILGGLIGGIIMQPLNILYALLLFG  282 (356)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHH----HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            4   34344433444444444444556666668888877666555433 3    44588999999999999999988888


Q ss_pred             HHHHHHHHHHHHhccccc------cchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHH
Q 041759          398 IISGICSIMAVVANDISN------AGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAII  464 (525)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~  464 (525)
                      ++.++...++.+......      .+........++.+++.+..++...++..|.+|+++||+.+|+.+...+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       283 IVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            887777665554321100      1123455566677888888999999999999999999999999887653

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.94  E-value=1.7e-25  Score=222.93  Aligned_cols=351  Identities=15%  Similarity=0.061  Sum_probs=222.0

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHH---hhh-----hHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTI---FSN-----NLWI  171 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~---~~~-----~~~~  171 (525)
                      ...+++++|+   +..+.|++.+++.++..+++++.|+++|| +|||++++++..+.+++.....   .++     .+..
T Consensus        34 ~~~l~~~~g~---s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (420)
T PRK09528         34 PIWLHDINGL---SGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLG  109 (420)
T ss_pred             HHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667999   99999999999999999999999999999 9999999887666654433211   111     1111


Q ss_pred             HHHHHHHHhhcccchhhhhheeeEeeec--CcchhhHHhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHh
Q 041759          172 YSLLRFFSGISRATIGTCTIVLLTEKVG--TEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSG  249 (525)
Q Consensus       172 l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~~f~~~~~~~~~~~~  249 (525)
                      .++++++.|.+.....+.    +.++.+  .+++++.++......++|..++|.++..+...+|+++|++.+++.++..+
T Consensus       110 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~  185 (420)
T PRK09528        110 AIVGGIYLGFGFLAGAGA----IEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLV  185 (420)
T ss_pred             HHHHHHHhhhhhccchhh----hhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHH
Confidence            233344444433333332    333333  34567788888889999999999986655556999999998888877663


Q ss_pred             HhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHH
Q 041759          250 LLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLA  329 (525)
Q Consensus       250 ~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  329 (525)
                      +.++..+|.++.       ++.+       + +++              ++.+     +......++.+|+|.++...+.
T Consensus       186 ~~~~~~~~~~~~-------~~~~-------~-~~~--------------~~~~-----~~~~~~~~~~l~~~~~~~l~l~  231 (420)
T PRK09528        186 LLFFAKPDAPST-------AKVA-------N-ALG--------------ANAS-----AVSLKDALALLKLPKFWFLVLY  231 (420)
T ss_pred             HHhcccccccch-------hhhc-------c-chh--------------cccc-----cccHHHHHHHccCCCeEeehHH
Confidence            444334443210       0000       0 000              0000     0001245567788875554443


Q ss_pred             HHHHHHHHHHHHhhhhhccc----ccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHH
Q 041759          330 LMVPGFGIGVVYYGMTLGIE----NLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSI  405 (525)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~  405 (525)
                      .+.............+.+..    +.+.+....+.+.++..+    +.+++.++.+++.||+|+|+.+..+..+..+..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~  307 (420)
T PRK09528        232 VIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVF----LEALIMFFAPFIINRIGAKNALLLAGTIMAVRII  307 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence            33332222221111222222    224444445555555444    5558899999999999999999888888888777


Q ss_pred             HHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHH-HHHHHHHHHHHHHHHHhh--ccCchh
Q 041759          406 MAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSI-MRLAIIFAAIFSSVLVAA--GSNNEF  482 (525)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~-~~~~~~~g~~~~p~i~~~--~~~~~~  482 (525)
                      ++.+..+.    + ..+...++.+.+.+...+....+..|.+|++.+++..+. .++...+|.+++|.+.|.  +..++.
T Consensus       308 l~~~~~~~----~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~  382 (420)
T PRK09528        308 GSGFATGP----L-EVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQ  382 (420)
T ss_pred             HHHhcccH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCch
Confidence            76654433    3 445556666666666666677888899999998887765 566778999999999985  334667


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 041759          483 VSYGVFGLVIICCGFFVIC  501 (525)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~  501 (525)
                      ..|.+.+++.++..++.++
T Consensus       383 ~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        383 GTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7787777776665554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.94  E-value=3.5e-25  Score=247.47  Aligned_cols=332  Identities=13%  Similarity=0.051  Sum_probs=238.3

Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 041759          102 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFL---SCLTMSVATSLTIFSNNLWIYSLLRFF  178 (525)
Q Consensus       102 ~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~---~~~~~~i~~~~~~~~~~~~~l~~~r~l  178 (525)
                      .+..+.+..  .....++..+++.++++++++++|+++|| +|||+++..   ..++..+..+.....+++++++++|++
T Consensus        41 ~~~~~~~~~--~~~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l  117 (1140)
T PRK06814         41 GLSGALGAY--NNALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFL  117 (1140)
T ss_pred             Hhccccccc--hHHHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            444444441  33567889999999999999999999999 999997643   223333333333445899999999999


Q ss_pred             HhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecC
Q 041759          179 SGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSE  257 (525)
Q Consensus       179 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpe  257 (525)
                      +|++.+...|...+++.+++++++|++++++.+++.++|.++||++ +.+....+|++.|+..++..++.+ +..+++|+
T Consensus       118 ~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  196 (1140)
T PRK06814        118 MGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGW-LASLFIPK  196 (1140)
T ss_pred             HHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHHhhCCC
Confidence            9999999999999999999999999999999999999999999999 555677899999955555555544 56666776


Q ss_pred             CchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHH
Q 041759          258 SPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGI  337 (525)
Q Consensus       258 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  337 (525)
                      ++.-   +.+.+......+.                                ....++.+.+++.++...+..++.++..
T Consensus       197 ~~~~---~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (1140)
T PRK06814        197 TGNA---APDLKIDRNIIRS--------------------------------TITLLKYAKADKRIWLAILGISWFWLVG  241 (1140)
T ss_pred             CCCC---CCCCeeccchHHH--------------------------------HHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            5320   0000000000000                                0135677888888777766666665555


Q ss_pred             HHHHhhhhhccc-ccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccc---
Q 041759          338 GVVYYGMTLGIE-NLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDI---  413 (525)
Q Consensus       338 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~---  413 (525)
                      ......+|.+.. .+|.+....+.+.+...+    +.++|.++.+++.++..+++.+..+.++.++..+.+.+....   
T Consensus       242 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~----g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  317 (1140)
T PRK06814        242 AVVLSQLPLLAKETLGGDENVATLFLAVFSV----GVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPA  317 (1140)
T ss_pred             HHHHHHhHHHHHHHcCCchHHHHHHHHHHHH----HHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccc
Confidence            444444555554 478888888888888777    888999999999988777766666655555554444332000   


Q ss_pred             ------------cccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          414 ------------SNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       414 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                                  ...+.+..++..++.+++.+...+...+++.+..|++.+|+++|+.++...+|..+++++.+.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~  392 (1140)
T PRK06814        318 EPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILAL  392 (1140)
T ss_pred             ccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHH
Confidence                        001123455666677788888888889999999999999999999999999999999988874

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.94  E-value=1.6e-24  Score=214.15  Aligned_cols=349  Identities=17%  Similarity=0.069  Sum_probs=232.7

Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHH---hh-----hhHHHHH
Q 041759          102 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTI---FS-----NNLWIYS  173 (525)
Q Consensus       102 ~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~---~~-----~~~~~l~  173 (525)
                      .+.+++|+   +..+.|++.+++.++..+++++.|+++|| +|||+.++.+.+..+++.....   +.     +.+..++
T Consensus        28 ~~~~~~g~---s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (396)
T TIGR00882        28 WLHDVNGL---SKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAI  103 (396)
T ss_pred             HHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            45667899   99999999999999999999999999999 9999999887776655443321   11     2334567


Q ss_pred             HHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhHhhe
Q 041759          174 LLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYI  253 (525)
Q Consensus       174 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~~f~~~~~~~~~~~~~~~~  253 (525)
                      +.|++.|++.+...+....+..|..  +++++..+......++|.+++|.++..+...+||++|++.+++.++..++.+.
T Consensus       104 ~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       104 VGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMF  181 (396)
T ss_pred             HHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHH
Confidence            7789999998888888777766643  33455677778888999999999977776779999999998888877634433


Q ss_pred             eecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHH
Q 041759          254 FVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVP  333 (525)
Q Consensus       254 ~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  333 (525)
                      ..||+|+.       ++.++    . . ++               ++ ++++     ..+.++++|+|.++...+..+..
T Consensus       182 ~~~~~~~~-------~~~~~----~-~-~~---------------~~-~~~~-----~~~~~~~l~~~~~~~~~l~~~~~  227 (396)
T TIGR00882       182 AKPKAPSS-------ATVAN----A-L-GA---------------NA-SAFS-----LKLALELFRQRKFWMFVLYVVGV  227 (396)
T ss_pred             hCCCCchh-------hhhhc----c-c-cc---------------cc-CCCC-----HHHHHHHHcCCcHHHHHHHHHHH
Confidence            34443310       00000    0 0 00               00 0000     13567888888866555444433


Q ss_pred             HHHHHHHHhhhhhccc----ccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHH
Q 041759          334 GFGIGVVYYGMTLGIE----NLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVV  409 (525)
Q Consensus       334 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~  409 (525)
                      ...........+.+.+    +.+.+....+...++..+    ..+++.+..+++.||+|+|+.+.++..+.++...+...
T Consensus       228 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i----~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~  303 (396)
T TIGR00882       228 ACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGEL----LNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF  303 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            3332222212233322    224444445555555444    55578889999999999999999888888877766554


Q ss_pred             hccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHH-HHHHHHHHHHHHHHHHhh--ccCchhHHHH
Q 041759          410 ANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSI-MRLAIIFAAIFSSVLVAA--GSNNEFVSYG  486 (525)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~-~~~~~~~g~~~~p~i~~~--~~~~~~~~~~  486 (525)
                      ..+.    + ..++..++.+.+..........+..+..|++.+++..+. .+....+|+.++|.+.|+  +..++...|.
T Consensus       304 ~~~~----~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~  378 (396)
T TIGR00882       304 ATTA----L-EVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYL  378 (396)
T ss_pred             cCCh----H-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHH
Confidence            3333    3 345555566665555545556677777888888887766 567789999999999985  3346778888


Q ss_pred             HHHHHHHHHHHHH
Q 041759          487 VFGLVIICCGFFV  499 (525)
Q Consensus       487 ~~~~~~~~~~~~~  499 (525)
                      +.+++.++..++.
T Consensus       379 ~~~~~~~i~~~~~  391 (396)
T TIGR00882       379 VLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHHHHHHHHHH
Confidence            8777776665543

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.94  E-value=3.2e-25  Score=211.27  Aligned_cols=352  Identities=12%  Similarity=0.059  Sum_probs=227.2

Q ss_pred             ccceeeccccccchhhh-hhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFI-KGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFF  178 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~-~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  178 (525)
                      .|.+.+|+|+   ++.+ .|.+.+++..+++++++++|+++|| +|.|+++.++.+.+++.+++.+++++++.+.+.|++
T Consensus        49 ~p~L~~elgl---T~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~l  124 (511)
T TIGR00806        49 TPYLLTVLNF---TEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVF  124 (511)
T ss_pred             HHHHHHHcCC---CHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999   9999 9999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             HhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHH--HHHHHHHHhHhheeec
Q 041759          179 SGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWT--SIPTLVYSGLLYIFVS  256 (525)
Q Consensus       179 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~~f~~~--~~~~~~~~~~~~~~lp  256 (525)
                      .|++.|... ....++..|+|+++|+++.++..++..+|.+++++++.++..+|||+.+.+.  ...+..+.++..+++|
T Consensus       125 lGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       125 YSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999998 9999999999999999999999999999999999885557778999855332  2223333336677888


Q ss_pred             CCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCccccccc---ccchhhhhhhhcchhHHHHHHHHHHH
Q 041759          257 ESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKE---SSFLSSIRELFVRRWALERTLALMVP  333 (525)
Q Consensus       257 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~  333 (525)
                      ..++-+.-+++.+.......+.   ++.  .+.+.   . +..+..+..+.   ......+++..++|.+....+--.+.
T Consensus       204 ~~~~sl~f~~~~~~~~~~~~~~---~~~--~~~~~---~-~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a  274 (511)
T TIGR00806       204 RPKRSLFFNRLEDVRGALPCEL---DQM--VPGPG---G-KLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFN  274 (511)
T ss_pred             CCchhhhhcccccccccccccc---ccC--CCCCc---c-ccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHH
Confidence            6554332222111000000000   000  00000   0 00000000000   11123455567777655544444444


Q ss_pred             HHHHHHHHhhhhhcccccCCh-hHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcc
Q 041759          334 GFGIGVVYYGMTLGIENLGFD-IYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVAND  412 (525)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~  412 (525)
                      ..+...+.++...+-++...+ ...++..-++..+    .+.+..+..|++-.++.+...+.++.....-+.+++.....
T Consensus       275 ~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tl----lga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t  350 (511)
T TIGR00806       275 SAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTL----LGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQS  350 (511)
T ss_pred             hhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHH----HHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcc
Confidence            444444333333322222111 1123333233222    33367777887755554433333333332222222222222


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHH
Q 041759          413 ISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSV  472 (525)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~  472 (525)
                      .   +.+..++..+++...+....++...-++.....+.-|..+|+++++..+-+.+-.+
T Consensus       351 ~---~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~  407 (511)
T TIGR00806       351 H---DIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITA  407 (511)
T ss_pred             c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEE
Confidence            1   24578888888888888888888888888877777799999998877555554433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.93  E-value=7.4e-24  Score=211.77  Aligned_cols=341  Identities=16%  Similarity=0.131  Sum_probs=258.5

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHhhcccchh
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS-----NNLWIYSLLRFFSGISRATIG  187 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~  187 (525)
                      |+...+++..+..+...+.++++|.++|| +.||++++.+.++.++..+..++.     .+.|.+++.-++.|++.+...
T Consensus        43 S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~  121 (524)
T PF05977_consen   43 SPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN  121 (524)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999 999999999998877665554432     478899999999999999999


Q ss_pred             hhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHH-hccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcC
Q 041759          188 TCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAY-TNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQG  266 (525)
Q Consensus       188 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~-~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~  266 (525)
                      |...+++.|..|+++...+.++.+...++..++||.++. ++...|-.+.|.+.++..++.. ......+..+.    ++
T Consensus       122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i-~~l~~~~~~~~----~~  196 (524)
T PF05977_consen  122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISI-LALLRWKPPPP----PS  196 (524)
T ss_pred             HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcccccc----cc
Confidence            999999999999999999999999999999999999954 4556788889988887666655 33333322110    00


Q ss_pred             CHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 041759          267 RQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTL  346 (525)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (525)
                      + ...++..+.+                                ...++.+.++|.++..++..++..+........+|+
T Consensus       197 ~-~~~e~~~~~l--------------------------------~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl  243 (524)
T PF05977_consen  197 S-LPRERFFSAL--------------------------------REGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPL  243 (524)
T ss_pred             c-cchhhhhhhH--------------------------------HHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhH
Confidence            0 0000111111                                135666677777665555455544444444445676


Q ss_pred             ccc-ccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHH
Q 041759          347 GIE-NLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLE  425 (525)
Q Consensus       347 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (525)
                      +.+ .++.+....+++.+..++    |+++|.++.+++.+|+++++++..+.++.+++.+.+.+..+.     +...+..
T Consensus       244 ~a~~~l~~~a~~yGll~a~~gv----Gai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~-----~~~~~~l  314 (524)
T PF05977_consen  244 FARDVLGGGASGYGLLLAAFGV----GAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSF-----WLALIAL  314 (524)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHH----HHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHH-----HHHHHHH
Confidence            664 478888888888888888    899999999999999999888888888888887777666544     3566677


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHHHh
Q 041759          426 LASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFVIC  501 (525)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  501 (525)
                      ++.|++.........+...+..|++.||+++++..+....+..+|.++.|.  ...+....+.+.+++.+++.++...
T Consensus       315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888888888999999999999999999999998888888888885  3335555666666555555554433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.93  E-value=6.5e-24  Score=213.01  Aligned_cols=384  Identities=10%  Similarity=0.003  Sum_probs=236.8

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWI-YSLLRFF  178 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~-l~~~r~l  178 (525)
                      ...+++++|+   +..+.+++.+.+.....+..+++|+++||++||||+++++.+++++++++++++.+... ++++|++
T Consensus        38 ~~yl~~~lg~---~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l  114 (489)
T PRK10207         38 AVFFVKQLGF---SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGT  114 (489)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            4456778999   99999999999998888889999999997479999999999999999999999876554 5589999


Q ss_pred             HhhcccchhhhhheeeEeeecCc--chhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheee
Q 041759          179 SGISRATIGTCTIVLLTEKVGTE--WRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFV  255 (525)
Q Consensus       179 ~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~l  255 (525)
                      +|+|.|...+...+++.|.+|++  +|+++++++..+.++|.++||.+ +++.+..|||+.|++.++..++.. +.+.+.
T Consensus       115 ~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~-~~~~~~  193 (489)
T PRK10207        115 IAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIAL-LVYFAC  193 (489)
T ss_pred             HHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-HHHHHc
Confidence            99999999999999999999876  45778999999999999999988 566667899999998755333333 333333


Q ss_pred             cCCchHhh--hcCCHHHHHHHHH----------hhCCCcCCccchhhhhhhc---cCCCCcccccccccchhhhhhhhcc
Q 041759          256 SESPRWLF--MQGRQEEAVEVIK----------SLSPIKDSNQLSLSLVSAV---SFGHEPAASSKESSFLSSIRELFVR  320 (525)
Q Consensus       256 pesp~~~~--~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~  320 (525)
                      ++..+...  .+++..+......          ......+............   ....-.. +++      ...+++|+
T Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~-~~~------~~~~~~r~  266 (489)
T PRK10207        194 RGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFR-EAF------KLDKTGRN  266 (489)
T ss_pred             chhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHh------cCCHHHHH
Confidence            32211000  0000000000000          0000000000000000000   0000000 000      00123444


Q ss_pred             hhHHHHHHH--HHHHHHHHHHHHhhhhhcccc-c-----CCh--hHHHHHHHHHhcccccccCchhHHHHHHHHHhhcCh
Q 041759          321 RWALERTLA--LMVPGFGIGVVYYGMTLGIEN-L-----GFD--IYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRK  390 (525)
Q Consensus       321 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~  390 (525)
                      +.+....+.  ..+.+.......+.++.+.++ .     |..  +.....+..+.       .++..++.+++.||+++|
T Consensus       267 r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~-------iii~~pl~~~l~~rl~~r  339 (489)
T PRK10207        267 KMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFW-------VVVASPILAGIYTHLGSK  339 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHH-------HHHHHHHHHHHHHHHhhC
Confidence            432221111  222223333333444444432 2     211  22222222232       336777788999999988


Q ss_pred             hH-------HHHHHHHHHHHHHHHH-----HhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHH
Q 041759          391 SS-------LLVLFIISGICSIMAV-----VANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSI  458 (525)
Q Consensus       391 ~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~  458 (525)
                      +.       +.+++++.+++++.+.     ........+.++.+...++.+++.....+...+++.+..|++.++.++|+
T Consensus       340 ~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~  419 (489)
T PRK10207        340 GKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGM  419 (489)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHH
Confidence            63       6677777776665432     11111112344566788888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcc-----------C-chhHHHHHHHHHHHHHHHHHHh
Q 041759          459 MRLAIIFAAIFSSVLVAAGS-----------N-NEFVSYGVFGLVIICCGFFVIC  501 (525)
Q Consensus       459 ~~~~~~~g~~~~p~i~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~  501 (525)
                      .+....+|+.++..+.....           . .+...|...++..+++.++.+.
T Consensus       420 ~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        420 WFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998887775210           1 1345566666555555444433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=6.6e-24  Score=195.31  Aligned_cols=319  Identities=14%  Similarity=0.101  Sum_probs=251.7

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTI---FSNNLWIYSLLR  176 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~---~~~~~~~l~~~r  176 (525)
                      .|.+++.|++   +..+.+++...++.|+.+++++.|++.+| +|+|+.+++|+.++++++.+..   -..++..++++-
T Consensus        36 ip~l~~~f~l---s~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~l  111 (422)
T COG0738          36 IPHLKEVFDL---TYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVAL  111 (422)
T ss_pred             HHHHHHHhCc---cHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            8999999999   99999999999999999999999999999 9999999999999999999885   457899999999


Q ss_pred             HHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH-Hhcc-------------------CCchHHH
Q 041759          177 FFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNR-------------------SSSWTII  236 (525)
Q Consensus       177 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~-------------------~~~wr~~  236 (525)
                      ++.|.|.+...+.+..+++...++++..+.+++.+.++++|.+++|+++ +++.                   ...|+++
T Consensus       112 Fila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~p  191 (422)
T COG0738         112 FILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFP  191 (422)
T ss_pred             HHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhH
Confidence            9999999999999999999999998899999999999999999999984 4332                   1247888


Q ss_pred             HHHHHHHHHHHHhHhheee--cCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhh
Q 041759          237 YLWTSIPTLVYSGLLYIFV--SESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSI  314 (525)
Q Consensus       237 f~~~~~~~~~~~~~~~~~l--pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (525)
                      |...+...+++. +.....  |+.+.     ..+++                              .   ++  + +...
T Consensus       192 Yl~~~~~lvll~-v~~~~~k~p~~~~-----~~~~~------------------------------~---~~--~-~~~~  229 (422)
T COG0738         192 YLILAGLLVLLA-VLILLSKLPDLQV-----AAPSL------------------------------G---AS--G-SAGL  229 (422)
T ss_pred             HHHHHHHHHHHH-HHHHhccCCcCCc-----ccccc------------------------------c---cc--c-cchH
Confidence            888777776666 333222  22110     00000                              0   00  0 0146


Q ss_pred             hhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHH
Q 041759          315 RELFVRRWALERTLALMVPGFGIGVVYYGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSL  393 (525)
Q Consensus       315 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~  393 (525)
                      .+++++|.++...+..++...........++.+..+ .|.+..++....+....    +.++|++++.++.+|+...+.+
T Consensus       230 ~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~----~~~vGRFig~~lm~~~~~~k~L  305 (422)
T COG0738         230 SSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWV----GFMVGRFIGSALMSRIKPEKYL  305 (422)
T ss_pred             HHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCHHHHH
Confidence            688999987777666666555544444444444444 78888888888887777    8889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHH
Q 041759          394 LVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVL  473 (525)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i  473 (525)
                      .+..++..+.++...+..+.      +.+...++.+++.+..+|..++...+..| ++ ....|.......+|+.+.|.+
T Consensus       306 af~a~~~ill~~~~~l~~g~------v~~~~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l  377 (422)
T COG0738         306 AFYALIAILLLLAVALIGGV------VALYALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPL  377 (422)
T ss_pred             HHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHH
Confidence            98888888877777777665      56667778889999999999999999999 33 344444455667888899999


Q ss_pred             Hhh
Q 041759          474 VAA  476 (525)
Q Consensus       474 ~~~  476 (525)
                      .|+
T Consensus       378 ~G~  380 (422)
T COG0738         378 QGV  380 (422)
T ss_pred             HHH
Confidence            986

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.93  E-value=2.7e-24  Score=195.07  Aligned_cols=325  Identities=16%  Similarity=0.119  Sum_probs=216.8

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhhe
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIV  192 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  192 (525)
                      +....|.+.|.|++++++.++.+|.++|| +|||++++++++..++..++.+++.|+..++++|++.|+..| ...+..+
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rA  143 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRA  143 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHH
Confidence            67789999999999999999999999999 999999999999999999999999999777778999999998 5677899


Q ss_pred             eeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhccCCc---hHHHH----HHHHHHHHHHHhHhheeecCCchHhhhc
Q 041759          193 LLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSS---WTIIY----LWTSIPTLVYSGLLYIFVSESPRWLFMQ  265 (525)
Q Consensus       193 ~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~---wr~~f----~~~~~~~~~~~~~~~~~lpesp~~~~~~  265 (525)
                      +++|.+++++|++.++..+..+++|.++||.+|..+..+.   =+.+|    ++..++.........+++|||-..   +
T Consensus       144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~---r  220 (451)
T KOG2615|consen  144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPL---R  220 (451)
T ss_pred             HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccc---h
Confidence            9999999999999999999999999999999966554311   11222    233333333222556788998421   1


Q ss_pred             CCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHH-------HHHHHHHHHHHHH
Q 041759          266 GRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALE-------RTLALMVPGFGIG  338 (525)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~  338 (525)
                      ++.++....          .+..++..+..... .           ..-....+|+....       ..+..+.......
T Consensus       221 k~~~~~~~~----------~~~~~~~~~~~~~~-~-----------~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s  278 (451)
T KOG2615|consen  221 KRNDEHSTL----------QEAADDRLALLKFA-R-----------IFKVAALRNPPLLDFISVLRIFGLHYFLYLELFS  278 (451)
T ss_pred             hhcccccch----------hhhhhhhhhhcchh-h-----------hhhhhhhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence            111110000          00000000000000 0           00111233332211       1122222222222


Q ss_pred             HHHhhhhhc-ccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcC-----hhHHHHHHHHHHHHHHHHHHhcc
Q 041759          339 VVYYGMTLG-IENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNR-----KSSLLVLFIISGICSIMAVVAND  412 (525)
Q Consensus       339 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~-----~~~~~~~~~~~~~~~~~~~~~~~  412 (525)
                      ...++...+ ...+|+++.+.+.+.+..++       .+.++.+.+..+..|     +..+..+..++.-..+++.....
T Consensus       279 ~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl-------~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~  351 (451)
T KOG2615|consen  279 GLENTVLFLTHGRFGYSSMQQGKVLSTTGL-------LMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLART  351 (451)
T ss_pred             HHHhhHHHhhcCccCCChhhheeeeehhhH-------HHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcccc
Confidence            222333333 35588888888877776666       555555555555433     33455555555555555555444


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          413 ISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      .     ........+..+......+....+.....|.++||+.+|+....+.++.++||++.|.
T Consensus       352 ~-----~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~  410 (451)
T KOG2615|consen  352 P-----VVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGV  410 (451)
T ss_pred             c-----hhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhe
Confidence            3     3566677777777777778889999999999999999999999999999999999984

>PTZ00207 hypothetical protein; Provisional

Probab=99.93  E-value=1.1e-23  Score=210.95  Aligned_cols=385  Identities=10%  Similarity=0.012  Sum_probs=245.7

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh------hhHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS------NNLWIYS  173 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~------~~~~~l~  173 (525)
                      .+.+++++|+   +..+.+++.++. ....+++++.|++.|| +|||++++++.+++++++++++++      ++++.++
T Consensus        50 s~~L~~~lgl---s~~~l~~i~svg-~~~g~~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~  124 (591)
T PTZ00207         50 SGAMQARYNL---TQRDLSTITTVG-IAVGYFLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS  124 (591)
T ss_pred             HHHHHHHhCc---CHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence            6789999999   999999998874 4456678889999999 999999999999999999999997      6899999


Q ss_pred             HHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHH-HHHHHHhccCCchHHHHHHHHHHHHHHHhHhh
Q 041759          174 LLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLT-LPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLY  252 (525)
Q Consensus       174 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l-~~~l~~~~~~~~wr~~f~~~~~~~~~~~~~~~  252 (525)
                      +.|++.|+|.+...+.....+.+|+| ++||++.++...+.++|.++ +++...+.. .+|+..|++.+++.++..++.+
T Consensus       125 l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~  202 (591)
T PTZ00207        125 VYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAI  202 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888889999996 78999999999999999986 555544443 4799999998888888776666


Q ss_pred             eeecCCc--hHhhhcCCHHHHHHHHHhhCCC-------------------------------------------------
Q 041759          253 IFVSESP--RWLFMQGRQEEAVEVIKSLSPI-------------------------------------------------  281 (525)
Q Consensus       253 ~~lpesp--~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------  281 (525)
                      .++++.|  ++...+++.++.++..++..+.                                                 
T Consensus       203 ~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v  282 (591)
T PTZ00207        203 VFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVT  282 (591)
T ss_pred             hheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            6665544  3332222111111111100000                                                 


Q ss_pred             --------------------cCCc-cchhhhhhhcc---CCCCccc-----c-c-ccccchhhhhhhhcchhHHHHHHHH
Q 041759          282 --------------------KDSN-QLSLSLVSAVS---FGHEPAA-----S-S-KESSFLSSIRELFVRRWALERTLAL  330 (525)
Q Consensus       282 --------------------~~~~-~~~~~~~~~~~---~~~~~~~-----~-~-~~~~~~~~~~~l~~~~~~~~~~~~~  330 (525)
                                          .++. +.+.+..+..+   +..+.+.     + + ...+...++++.+++..+|...+..
T Consensus       283 ~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~  362 (591)
T PTZ00207        283 VIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSI  362 (591)
T ss_pred             HHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHH
Confidence                                0000 00000000000   0000000     0 0 0011123677777787777666555


Q ss_pred             HHHHHHHHHHHhhhhhccccc-CChhHH--HHHHHHHhcccccccCchhHHHHHHHHHhhcC--------hhH-HHHHHH
Q 041759          331 MVPGFGIGVVYYGMTLGIENL-GFDIYL--GVVFNALLEIPNLASTIPSFFLTFFLIQKWNR--------KSS-LLVLFI  398 (525)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~--------~~~-~~~~~~  398 (525)
                      ++.........+-+..+.+.+ |.+...  ...+.++.++    ++.+|++.+|.+.....+        |.. +.+..+
T Consensus       363 ~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si----~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~  438 (591)
T PTZ00207        363 FCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGV----GSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV  438 (591)
T ss_pred             HHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhH----HHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH
Confidence            544433333333334444555 442222  2225566666    555788888776622211        122 233333


Q ss_pred             HHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHH-HHHHhh-
Q 041759          399 ISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFS-SVLVAA-  476 (525)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~-p~i~~~-  476 (525)
                       +.+..+++.....     ...+++..++.+++.|..+++....++|+|. ++-|+-.-+.....-+|+++. -.+.|. 
T Consensus       439 -~~~~~lll~~~~p-----~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~  511 (591)
T PTZ00207        439 -CIITMLTLFLTLP-----KAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEW  511 (591)
T ss_pred             -HHHHHHHHHHHCC-----ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence             5555444444422     1367888999999999999999999999999 776777777776666666654 334441 


Q ss_pred             -c-------------cCchhHHHHHHHHHHHHHHHHHHhc
Q 041759          477 -G-------------SNNEFVSYGVFGLVIICCGFFVICL  502 (525)
Q Consensus       477 -~-------------~~~~~~~~~~~~~~~~~~~~~~~~~  502 (525)
                       +             ..-...+|.+++++++++.+....+
T Consensus       512 Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l  551 (591)
T PTZ00207        512 YTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV  551 (591)
T ss_pred             HHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence             0             1124578888888888887764443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.92  E-value=2.8e-22  Score=197.82  Aligned_cols=370  Identities=9%  Similarity=-0.040  Sum_probs=246.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH-
Q 041759           42 AILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP-  120 (525)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~-  120 (525)
                      .+.++..++..+.........                                     +|.+.+|.|+   +..++|++ 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~-------------------------------------lp~~l~~~g~---~~~~iGl~~   42 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDA-------------------------------------LPTLLREDGA---PLTALAFLP   42 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHH-------------------------------------HHHHHHHcCC---CHHHHHHHH
Confidence            345556677777777766666                                     8999999999   99999997 


Q ss_pred             -HHHHHHHHHHhHHhh-HhcccccCCchHHHHHHHHHH-HHHHHHHH---hhhh-HHHHHHHHHHHhhcccchhhhhhee
Q 041759          121 -AASHFTGCLLGIVFL-ATLADSSLGRKNLLFLSCLTM-SVATSLTI---FSNN-LWIYSLLRFFSGISRATIGTCTIVL  193 (525)
Q Consensus       121 -~s~~~lg~~~~~~~~-G~l~dr~~Grk~~~~~~~~~~-~i~~~~~~---~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~  193 (525)
                       .+.+.+...+.+++. ++..|| +||||.+++...+. ++.....+   ...+ ..+++..-++.++..+...+...++
T Consensus        43 ~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~  121 (390)
T TIGR02718        43 LVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGM  121 (390)
T ss_pred             HHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             467788888888888 447999 99999876655332 22222222   2222 3444555666777777788888888


Q ss_pred             eEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHH
Q 041759          194 LTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAV  272 (525)
Q Consensus       194 i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~  272 (525)
                      ..|..++++++...+....+..+|.++|+.. +++.+..|||..|++.+++.++..+..++..|++++    +++.++. 
T Consensus       122 ~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~----~~~~~~~-  196 (390)
T TIGR02718       122 AAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA----SPEAPLA-  196 (390)
T ss_pred             HHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC----ccccchh-
Confidence            8888888888888888888889999998876 566677899999999998887766343333333221    0000000 


Q ss_pred             HHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccccC
Q 041759          273 EVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLG  352 (525)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (525)
                                                      +     ..++++++|+|..+......++........+...+.+..+.|
T Consensus       197 --------------------------------~-----~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G  239 (390)
T TIGR02718       197 --------------------------------R-----RASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAG  239 (390)
T ss_pred             --------------------------------h-----HHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcC
Confidence                                            0     025667888887666665555555544444444566667789


Q ss_pred             ChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccc-cccchhHHHHHHHHHHHH
Q 041759          353 FDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDI-SNAGKRMRIGLELASLFS  431 (525)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  431 (525)
                      .+....+.......+   +..+++.++.+++.||+|+|+.+..+..+..+..+........ .............+.+++
T Consensus       240 ~s~~~ig~~~~~~~~---~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (390)
T TIGR02718       240 WPLEWIGRLGMAGGA---VTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLI  316 (390)
T ss_pred             CCHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHH
Confidence            998888777655432   1344678899999999999999888776653333322221111 001111223333444555


Q ss_pred             HHHHHHHHHhhhccccCc-chhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHH
Q 041759          432 AYIAYTVIFIYAIELFPT-CVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGF  497 (525)
Q Consensus       432 ~~~~~~~~~~~~~~~~p~-~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~  497 (525)
                      .+...+.......+..++ +.+++.+++.+....+|..++|.+.|.  +..++...|...+++.+++.+
T Consensus       317 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       317 TGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            666667777776677665 788999999999999999999999985  223555666666665555444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.9e-24  Score=197.18  Aligned_cols=337  Identities=17%  Similarity=0.087  Sum_probs=238.0

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhhe
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIV  192 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  192 (525)
                      ++.++|++.+++.+.+++.+++.|.+.|| +|+|-.+++|++++..++++.++.++++.++++|.+||+|.+...+...+
T Consensus       104 e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla  182 (464)
T KOG3764|consen  104 ENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA  182 (464)
T ss_pred             cccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence            78999999999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             eeEeeecC-cchhhHHhHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHH
Q 041759          193 LLTEKVGT-EWRGLVGILDSFFFTIGTLTLPAIAYTN-RSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEE  270 (525)
Q Consensus       193 ~i~~~~~~-~~r~~~~~~~~~~~~~G~~l~~~l~~~~-~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~  270 (525)
                      +++|.+|+ ++|++++|+.-.+.++|.++||.+|.++ +..|.+.+|++.+++.++-..+..+.++.+..      +.++
T Consensus       183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~------~~~~  256 (464)
T KOG3764|consen  183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM------DPDS  256 (464)
T ss_pred             HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc------Cccc
Confidence            99999986 4689999999999999999999996655 56799999999999999988454444443210      0000


Q ss_pred             HHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 041759          271 AVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIEN  350 (525)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (525)
                      .              +                  +     ..++++++++|..+........+..+..+.--.++.|+.+
T Consensus       257 ~--------------~------------------~-----~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e  299 (464)
T KOG3764|consen  257 T--------------E------------------Q-----GTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLE  299 (464)
T ss_pred             c--------------c------------------c-----CccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHH
Confidence            0              0                  0     0367889999985554444444444444444444554433


Q ss_pred             -cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhc--ChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHH
Q 041759          351 -LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWN--RKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELA  427 (525)
Q Consensus       351 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (525)
                       +. .+   .+..++..++..+..+++..+.|.+.||++  |......+.+...++...+.+....     ...++-.+.
T Consensus       300 ~m~-~p---~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~-----~~L~vp~~~  370 (464)
T KOG3764|consen  300 TMF-TP---GWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSI-----AQLWVPNFG  370 (464)
T ss_pred             hcc-CC---CcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhH-----HHHhhhhHH
Confidence             33 21   222344555555677799999999999999  5444444555555444444444333     222333333


Q ss_pred             HHHHHHHHHHHHHhhhccccC---cc---hhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHH
Q 041759          428 SLFSAYIAYTVIFIYAIELFP---TC---VRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFV  499 (525)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~p---~~---~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~  499 (525)
                      .+++.+...........++..   .+   ..|...++......+|..++|.+.|.  ...+..+...++++..++...+.
T Consensus       371 l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl  450 (464)
T KOG3764|consen  371 LGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVL  450 (464)
T ss_pred             HHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHH
Confidence            333333333322222222222   22   45788888888889999999999995  34466777777777777666544


Q ss_pred             Hhc
Q 041759          500 ICL  502 (525)
Q Consensus       500 ~~~  502 (525)
                      .++
T Consensus       451 ~ll  453 (464)
T KOG3764|consen  451 LLL  453 (464)
T ss_pred             HHH
Confidence            433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.92  E-value=1.9e-22  Score=202.50  Aligned_cols=372  Identities=9%  Similarity=-0.009  Sum_probs=231.0

Q ss_pred             cccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccch
Q 041759          107 WGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATI  186 (525)
Q Consensus       107 ~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~  186 (525)
                      +|+   +..+.|++.+.+.++..++++++|+++||++|||+++.++.++.+++.++.+++++++.++++|++.|+|.|..
T Consensus        43 lg~---s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~  119 (475)
T TIGR00924        43 LGF---SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLF  119 (475)
T ss_pred             CCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccc
Confidence            899   99999999999999999999999999998349999999999999999999999999999999999999999999


Q ss_pred             hhhhheeeEeeecCcc---hhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeec----CC
Q 041759          187 GTCTIVLLTEKVGTEW---RGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVS----ES  258 (525)
Q Consensus       187 ~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lp----es  258 (525)
                      .+...++++|++|+++   |+++++++..+.++|.++||.+ +++.+..+||+.|.+.++..++.. +.+++.+    +.
T Consensus       120 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~-l~~~~~~~~~~~~  198 (475)
T TIGR00924       120 KANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL-LTFFAGRHMLRDI  198 (475)
T ss_pred             cCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHcccccccC
Confidence            9999999999998754   8889999999999999999998 555566799999999876555443 3333322    22


Q ss_pred             chHhhhcCCHHHHHHHHHhh----------CCC-cCCccchhhhh----------hhccCCCCcccccccccchhhhhhh
Q 041759          259 PRWLFMQGRQEEAVEVIKSL----------SPI-KDSNQLSLSLV----------SAVSFGHEPAASSKESSFLSSIREL  317 (525)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l  317 (525)
                      |+. ..+.+.++.+......          ... ...+.......          .......++    +     ....+-
T Consensus       199 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~  268 (475)
T TIGR00924       199 GSV-PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKP----R-----LDAVAR  268 (475)
T ss_pred             CCC-CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhc----c-----CCHHHH
Confidence            210 0000011000000000          000 00000000000          000000000    0     000000


Q ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCCh-------hHHHHHHHHHhcccccccCchhHHHHHHHHHhhcC
Q 041759          318 FVRRWALERTLALMVPGFGIGVVYYGMTLGIEN-LGFD-------IYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNR  389 (525)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~  389 (525)
                      .|...+....+...+.+.........++.+.++ .+.+       ......+.++..+       +..++..++..|.+|
T Consensus       269 ~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~ii-------l~~p~~~~~~~~l~~  341 (475)
T TIGR00924       269 NKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVV-------VGSPVLAMIWTRLGR  341 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHH-------HHHHHHHHHHHHHHh
Confidence            111111222222333333333333434443322 2211       2223333333322       444443333333333


Q ss_pred             -----hhHH--HHHHHHHHHHHHHHHHh----ccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHH
Q 041759          390 -----KSSL--LVLFIISGICSIMAVVA----NDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSI  458 (525)
Q Consensus       390 -----~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~  458 (525)
                           +...  .++.++.+++++.+.+.    ......+.++.+...++.+++.....|...++..+..|++.||+.+|+
T Consensus       342 ~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~  421 (475)
T TIGR00924       342 KGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGM  421 (475)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence                 3333  67777777777666542    110012355778888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHH
Q 041759          459 MRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFV  499 (525)
Q Consensus       459 ~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~  499 (525)
                      ......+|..+++.+...  ...+....|...+++.++..++.
T Consensus       422 ~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (475)
T TIGR00924       422 WFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVM  464 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence            999999999999888774  22234555666665555544444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.91  E-value=4.9e-24  Score=219.72  Aligned_cols=282  Identities=15%  Similarity=0.160  Sum_probs=204.0

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh------------
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN------------  167 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~------------  167 (525)
                      +++++++|++   +..+.|++.+.+.++++++.++.|+++|| +|||+++.++.+++++++++.++.+            
T Consensus        56 l~~iek~F~l---ss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~  131 (633)
T TIGR00805        56 LTTIERRFKL---STSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTV  131 (633)
T ss_pred             chhhhhhhCC---CCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHHHHHHHHHhChHHhcCCccccccc
Confidence            9999999999   99999999999999999999999999999 9999999999999999999998764            


Q ss_pred             ---------------------------------------hHHHHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHh
Q 041759          168 ---------------------------------------NLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGI  208 (525)
Q Consensus       168 ---------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~  208 (525)
                                                             .+..++++|+++|+|.+...+...+++.|++|+++|+++++
T Consensus       132 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~  211 (633)
T TIGR00805       132 SSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIG  211 (633)
T ss_pred             cccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHH
Confidence                                                   25678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc-CC----------------------chHHHHHHHHHHHHHHHhHhheeecCC-chHhhh
Q 041759          209 LDSFFFTIGTLTLPAIAYTNR-SS----------------------SWTIIYLWTSIPTLVYSGLLYIFVSES-PRWLFM  264 (525)
Q Consensus       209 ~~~~~~~~G~~l~~~l~~~~~-~~----------------------~wr~~f~~~~~~~~~~~~~~~~~lpes-p~~~~~  264 (525)
                      ++..+..+|.++|++++..+. .+                      .||..|++.+++.++.. +.++++|+. |+.. .
T Consensus       212 i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~-v~l~~~p~~lp~~~-~  289 (633)
T TIGR00805       212 ILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS-IPFFFFPKALPKEG-K  289 (633)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH-HHHHhCccccCCcc-c
Confidence            999999999999999854332 11                      27788999888888877 444556653 2100 0


Q ss_pred             cCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhh
Q 041759          265 QGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGM  344 (525)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (525)
                      +.+.+..++    . . .+..+         .+ ...+...+.++....+++++++|.++...+..++...........+
T Consensus       290 ~~~~~~~~~----~-~-~~~~~---------~~-~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~l  353 (633)
T TIGR00805       290 RVNVDVHET----E-K-LEKSE---------DK-SRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFL  353 (633)
T ss_pred             ccchhhhhh----h-c-ccccc---------cc-cchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000000    0 0 00000         00 0000000001112357789999998877777777666665555556


Q ss_pred             hhccc-ccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhc--ChhHHHHHHHHHHHHHHH
Q 041759          345 TLGIE-NLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWN--RKSSLLVLFIISGICSIM  406 (525)
Q Consensus       345 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g--~~~~~~~~~~~~~~~~~~  406 (525)
                      |.+++ ++|.+...++.+.+...+   .+.++|.+++|+++||++  .|+.+.++.++..++.++
T Consensus       354 P~yl~~~~g~s~~~ag~l~~~~~i---~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       354 PKYLENQYGISSAEANFLIGVVNL---PAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHcCCcHHHHHHHhhhhhh---hHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            66655 589998888887766543   133578899999999987  456666666666666444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.90  E-value=1.5e-21  Score=177.00  Aligned_cols=340  Identities=16%  Similarity=0.147  Sum_probs=264.9

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      ++++++|+|+   |.+..|++.++..+...+.+++..+++.| +|.++.+..++++..+|.++-... +.+.++.+-.+.
T Consensus        35 L~~Ir~~~gl---s~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~  109 (395)
T COG2807          35 LDEIRQDLGL---SFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLA  109 (395)
T ss_pred             HHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHH
Confidence            9999999999   99999999999999999999999999999 999999999999999999998887 888899999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc-cC-CchHHHHHHHHHHHHHHHhHhheeecC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN-RS-SSWTIIYLWTSIPTLVYSGLLYIFVSE  257 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~-~~-~~wr~~f~~~~~~~~~~~~~~~~~lpe  257 (525)
                      |.|.+......++.+.+.+|++ -+..++++.+..++|..+++.++.-+ .+ .+||....+-+.++++.+ +.|+  |.
T Consensus       110 G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl-~~Wl--Pq  185 (395)
T COG2807         110 GAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLAL-LIWL--PQ  185 (395)
T ss_pred             HhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHH-HHHh--hh
Confidence            9999999999999999999754 69999999999999999988775433 22 379999999999999887 5543  32


Q ss_pred             CchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHH
Q 041759          258 SPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGI  337 (525)
Q Consensus       258 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  337 (525)
                      ..       |++..        + ...                    +     ..+-..++|+|.-|...+..-+..+..
T Consensus       186 ~~-------r~~~~--------~-~~~--------------------~-----~~~~~~vw~~~~aW~vtLfmGlqS~~~  224 (395)
T COG2807         186 AL-------REQAA--------S-IAT--------------------K-----LVSVRKVWRSPLAWQVTLFMGLQSLLY  224 (395)
T ss_pred             cc-------ccccc--------c-ccc--------------------c-----cccccccccCchhHHHHHHHHhhHHHH
Confidence            11       11000        0 000                    0     013345889998787777766666666


Q ss_pred             HHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHhcccccc
Q 041759          338 GVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKW-NRKSSLLVLFIISGICSIMAVVANDISNA  416 (525)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (525)
                      ....-.+|.++.+.|.+..+++.+.++..+    .+++..+....+.+|. ++|+..+....++.++.+.+.+.+..   
T Consensus       225 Y~~~~WLP~ili~~G~sa~~aG~llsl~~l----~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~---  297 (395)
T COG2807         225 YIVIGWLPAILIDRGLSAAEAGSLLSLMQL----AQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQ---  297 (395)
T ss_pred             HHHHHHHHHHHHHcCCCHHHhhhHHHHHHH----HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhh---
Confidence            666666688888999999999999999998    8889999999999975 56777777777778888877776665   


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhccccC-cchhhhhhHHHHHHHHHHHHHHHHHHhhc---cCchhHHHHHHHHHH
Q 041759          417 GKRMRIGLELASLFSAYIAYTVIFIYAIELFP-TCVRNSATSIMRLAIIFAAIFSSVLVAAG---SNNEFVSYGVFGLVI  492 (525)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~~~~~~~~~~g~~~~p~i~~~~---~~~~~~~~~~~~~~~  492 (525)
                      ++   +...++.|++.+..++.....+....+ ++..+.-.|+.+.++++-+.++|++.|..   ..++...+..++.+.
T Consensus       298 ~~---~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~  374 (395)
T COG2807         298 LP---ILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALAT  374 (395)
T ss_pred             HH---HHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence            12   222578888989999988777776553 45556777888888899999999999952   234445555555544


Q ss_pred             HHHHHHH
Q 041759          493 ICCGFFV  499 (525)
Q Consensus       493 ~~~~~~~  499 (525)
                      ++..+.-
T Consensus       375 i~m~i~G  381 (395)
T COG2807         375 LLMLIFG  381 (395)
T ss_pred             HHHHHHH
Confidence            4444433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.90  E-value=2e-21  Score=193.31  Aligned_cols=358  Identities=15%  Similarity=0.105  Sum_probs=218.7

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      ++.+.+|+|    +.....|+.+.+.++.+++.++.|+++|. ||||.+++.+.++..+|++.++.++|...++++..+.
T Consensus        67 l~~I~~diG----~~~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~  141 (599)
T PF06609_consen   67 LPYINADIG----GSDNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY  141 (599)
T ss_pred             HHHHHHhcC----CCccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH
Confidence            778888888    45778899999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHH-hccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAY-TNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~-~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |+|.|.... ....++|..|.|+|....++......+....++.++. +..+.+|||.|++.++...+.+++..++.. +
T Consensus       142 GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~-P  219 (599)
T PF06609_consen  142 GVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYF-P  219 (599)
T ss_pred             HHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhC-C
Confidence            999886654 4555899999999988887777666566666777754 344669999999998887776644333332 2


Q ss_pred             chHhhhcCCHHHHHHHHHhhC-------------------CCcCC-ccchhh-hhh-h--------ccCCCCcccccccc
Q 041759          259 PRWLFMQGRQEEAVEVIKSLS-------------------PIKDS-NQLSLS-LVS-A--------VSFGHEPAASSKES  308 (525)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~-------------------~~~~~-~~~~~~-~~~-~--------~~~~~~~~~~~~~~  308 (525)
                      |++...+++....++.++++.                   -+.+. .+.... ..- .        ..---|..  .+.+
T Consensus       220 P~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~--~~~~  297 (599)
T PF06609_consen  220 PPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWF--GAPK  297 (599)
T ss_pred             CchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhh--ccCC
Confidence            222111111111111111110                   00000 000000 000 0        00000000  0000


Q ss_pred             cchhhhhhhhcchhHHHH-HHHHHHHHHHH-HHHHhhhhhcccccCChh---HHHHHHHHHhcccccccCchhHHHHHHH
Q 041759          309 SFLSSIRELFVRRWALER-TLALMVPGFGI-GVVYYGMTLGIENLGFDI---YLGVVFNALLEIPNLASTIPSFFLTFFL  383 (525)
Q Consensus       309 ~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l  383 (525)
                      + ..-..+++|+++.... +++.++..... ....++......-++-+.   ...+.......+    +...|.++.+.+
T Consensus       298 ~-Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~f----g~~~g~~i~g~l  372 (599)
T PF06609_consen  298 D-PLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGF----GSCAGAVILGLL  372 (599)
T ss_pred             C-CcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHH----HHHHHHHHHHHH
Confidence            0 0233467777542222 22222222111 111122121111222222   122222222333    555788888889


Q ss_pred             HHhhcChhHH-HHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHH
Q 041759          384 IQKWNRKSSL-LVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLA  462 (525)
Q Consensus       384 ~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~  462 (525)
                      ..+++|-|.. +++..++.+++.++......   +....+...++.+++.+.........+.-..|++.-+++.|+...+
T Consensus       373 ~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~---n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~  449 (599)
T PF06609_consen  373 FSKIRHIKWQLIFGSVLMTAFCGAMAAVRPD---NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSI  449 (599)
T ss_pred             HHHccchhHHHHHHHHHHHHHHHHHHHccCC---CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHH
Confidence            9888765544 56665555554444443332   1223456677788888887777777788888999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 041759          463 IIFAAIFSSVLV  474 (525)
Q Consensus       463 ~~~g~~~~p~i~  474 (525)
                      ..+|+.++..+.
T Consensus       450 R~~GGsIg~aIy  461 (599)
T PF06609_consen  450 RSIGGSIGYAIY  461 (599)
T ss_pred             HHHhhHHHHHHH
Confidence            988877765554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.89  E-value=3.6e-20  Score=183.46  Aligned_cols=359  Identities=15%  Similarity=0.113  Sum_probs=256.7

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHH-HHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhhcccchhhh
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLL-FLSCLTMSVATSLTIFS--NNLWIYSLLRFFSGISRATIGTC  189 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~-~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~  189 (525)
                      ..+..++..++..+..++..|+.|.++|+ -|+||.+ .+..++..+++.+..+.  ++++...+.-++.-++.+.....
T Consensus        68 ~~s~~~~~~sis~l~~all~P~lGa~aD~-~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vf  146 (477)
T PF11700_consen   68 TSSLWLYANSISGLLQALLAPFLGAIADY-GGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVF  146 (477)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHcc-cccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            56677889999999999999999999999 8876654 45556666677776664  34555566667777788888888


Q ss_pred             hheeeEeeecCcch--------------------------hhHHhHHHHHHHHHHHHHHHHHHhc--c-------CCchH
Q 041759          190 TIVLLTEKVGTEWR--------------------------GLVGILDSFFFTIGTLTLPAIAYTN--R-------SSSWT  234 (525)
Q Consensus       190 ~~~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~l~~~l~~~~--~-------~~~wr  234 (525)
                      ..+++.|..+++++                          ++..+.-.....+|.++..++...+  .       ..+-|
T Consensus       147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r  226 (477)
T PF11700_consen  147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR  226 (477)
T ss_pred             HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence            89999999998888                          8999888888888888877664332  1       23468


Q ss_pred             HHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhh
Q 041759          235 IIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSI  314 (525)
Q Consensus       235 ~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (525)
                      ..+.+.++..++..+...+++||.|+....++.........+++                                ...+
T Consensus       227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l--------------------------------~~t~  274 (477)
T PF11700_consen  227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRL--------------------------------WRTF  274 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHH--------------------------------HHHH
Confidence            99999999988888788889998764111111111122222332                                1356


Q ss_pred             hhhhcchhHHHHHHHHHHHHHHHHHHHhhh-hhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcCh--h
Q 041759          315 RELFVRRWALERTLALMVPGFGIGVVYYGM-TLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRK--S  391 (525)
Q Consensus       315 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~--~  391 (525)
                      +++.+.|...+.++..++..-+.+...... .+..+++|++..+...+..+..+    .+++|.++.+++.||+|.|  +
T Consensus       275 k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i----~a~~Ga~~~g~l~~r~g~k~~~  350 (477)
T PF11700_consen  275 KEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQI----VAIIGALLFGWLQDRFGPKTKR  350 (477)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCchhH
Confidence            677777776666666555555554444333 34444789988877766666666    7779999999999999988  7


Q ss_pred             HHHHHHHHHHHHHHHHHH--hccc-cccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHH
Q 041759          392 SLLVLFIISGICSIMAVV--ANDI-SNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAI  468 (525)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~  468 (525)
                      .+.++.....+..+.-.+  .+.. ...+.+..+++.++.|++.+..++..-++.+|+.|+++.+..+|+........++
T Consensus       351 ~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~  430 (477)
T PF11700_consen  351 TLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSW  430 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence            777666665333332222  1111 0012346777888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh---ccCchhHHHHHHHHHHHHHHHHHHhccCCCCC
Q 041759          469 FSSVLVAA---GSNNEFVSYGVFGLVIICCGFFVICLPETRGS  508 (525)
Q Consensus       469 ~~p~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (525)
                      ++|++.|.   ...+....+....++.+++.++.+.++..|.+
T Consensus       431 lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~  473 (477)
T PF11700_consen  431 LGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGR  473 (477)
T ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhh
Confidence            99999995   22345667777777777777777777654443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09669 putative symporter YagG; Provisional

Probab=99.89  E-value=7.1e-21  Score=190.84  Aligned_cols=325  Identities=13%  Similarity=0.050  Sum_probs=219.2

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccc---cCCc-hHHHHHHHHHHHHHHHHHHhhhh------H
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADS---SLGR-KNLLFLSCLTMSVATSLTIFSNN------L  169 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr---~~Gr-k~~~~~~~~~~~i~~~~~~~~~~------~  169 (525)
                      ...+.+++|+   +..++|++.++..+..++..|+.|+++||   |+|| |+.++.+.+..+++.++....++      +
T Consensus        33 ~~~~t~~~gl---s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~  109 (444)
T PRK09669         33 AYFYTDVFGL---SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI  109 (444)
T ss_pred             HHHHHHhcCC---CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            5566778999   99999999999999999999999999998   5787 45666787888777766555442      5


Q ss_pred             HHHHHHHHHHhhcccchhhhhheeeEeeec-CcchhhHHhHHHHHHHHHHHHHHHH-----HHhc---cCCchHHHHHHH
Q 041759          170 WIYSLLRFFSGISRATIGTCTIVLLTEKVG-TEWRGLVGILDSFFFTIGTLTLPAI-----AYTN---RSSSWTIIYLWT  240 (525)
Q Consensus       170 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~l~~~l-----~~~~---~~~~wr~~f~~~  240 (525)
                      +++++..++.+.+.........++.+|+.+ +++|++..++...+..+|..+++.+     ..+-   ...+|+..+.+.
T Consensus       110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~  189 (444)
T PRK09669        110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVM  189 (444)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            667777777777777777777788999884 5889988888888888877776543     2221   135799988888


Q ss_pred             HHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcc
Q 041759          241 SIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVR  320 (525)
Q Consensus       241 ~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  320 (525)
                      +++.++..++.++..+|.++    + + ++         +                          +.+....++.+++|
T Consensus       190 ~ii~~v~~~~~~~~~~e~~~----~-~-~~---------~--------------------------~~~~~~~~~~~~~n  228 (444)
T PRK09669        190 GLLGVVLFFCCFFMTKERYT----P-E-VD---------N--------------------------SSSVWKDLKLLLGN  228 (444)
T ss_pred             HHHHHHHHHHHhCCeEEecC----C-C-Cc---------C--------------------------CCCHHHHHHHHhCC
Confidence            88887776455555555321    0 0 00         0                          00011467788899


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHH
Q 041759          321 RWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIIS  400 (525)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~  400 (525)
                      |.++..++..++.............++.+..-.+............+    ..+++.++.+++.||+|+|+.+..+..+.
T Consensus       229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i----~~ii~~~~~~~l~~r~gk~~~~~~~~~~~  304 (444)
T PRK09669        229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMI----AGLFGALLSERLLGKFDRVRAFKWTIVAF  304 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            98766655554444443332223333333322222222223332233    55578889999999999999998887666


Q ss_pred             HHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccC-------cchhhhhhHHHHHHHHHHHHHHHHH
Q 041759          401 GICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFP-------TCVRNSATSIMRLAIIFAAIFSSVL  473 (525)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~~~~~~~~~~g~~~~p~i  473 (525)
                      .+..+.+...+..   +....++..++.+++.+...+..+++.+|..+       ++..|...+..+....+|..++|.+
T Consensus       305 ~~~~~~~~~~~~~---~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i  381 (444)
T PRK09669        305 VILSALIFFIPPS---NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAV  381 (444)
T ss_pred             HHHHHHHHHhCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHH
Confidence            5544433333222   23355666778888888888999999998875       2334567788888888898888888


Q ss_pred             Hh
Q 041759          474 VA  475 (525)
Q Consensus       474 ~~  475 (525)
                      .|
T Consensus       382 ~g  383 (444)
T PRK09669        382 VG  383 (444)
T ss_pred             HH
Confidence            76

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.89  E-value=8.1e-21  Score=191.85  Aligned_cols=372  Identities=11%  Similarity=0.061  Sum_probs=221.4

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccC-CchHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSL-GRKNLLFLSCLTMSVATSLTIFSN-NLWIYSLLRF  177 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~-Grk~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~  177 (525)
                      ...+++++|+   +..+.+++.+.+........+++|+++|| + |||++++++.++.+++.+++++++ +.+.+.++|+
T Consensus        45 ~~yl~~~lg~---s~~~a~~~~~~~~~~~~~~~~~~G~LaDr-~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~  120 (500)
T PRK09584         45 AVYLVKQLGM---SEADSITLFSSFSALVYGLVAIGGWLGDK-VLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMA  120 (500)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            4456688999   88888988888877766677899999999 8 999999999999999999998874 5667788999


Q ss_pred             HHhhcccchhhhhheeeEeeecCcc--hhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHH---hHh
Q 041759          178 FSGISRATIGTCTIVLLTEKVGTEW--RGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYS---GLL  251 (525)
Q Consensus       178 l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~---~~~  251 (525)
                      ++|++.|...+...+++.|++|+++  |+.++++++.+.++|.++||.+ +++.+..|||+.|++.++..++..   +..
T Consensus       121 l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~  200 (500)
T PRK09584        121 TIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFC  200 (500)
T ss_pred             HHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988988899999998643  4567888999999999999988 556677899999999876544433   122


Q ss_pred             heeecCCchHhhhcCCHHHHHHHH-----------HhhCCCcCCccchhhhh------hhccCCCCcccccccccchhhh
Q 041759          252 YIFVSESPRWLFMQGRQEEAVEVI-----------KSLSPIKDSNQLSLSLV------SAVSFGHEPAASSKESSFLSSI  314 (525)
Q Consensus       252 ~~~lpesp~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  314 (525)
                      ...++|.++. ..+++.+......           ..... .+. +......      .......+ .         ...
T Consensus       201 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~-~---------~~~  267 (500)
T PRK09584        201 QRWVKQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLL-HNQ-EIARMALGVVALGIVVIFGKE-A---------FAM  267 (500)
T ss_pred             HHHhccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHH-hcc-hHHHHHHHHHHHHHHHHHHHH-H---------hhc
Confidence            2233332100 0000001000000           00000 000 0000000      00000000 0         000


Q ss_pred             hhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhccc-----c-----cCC--hhHHHHHHHHHhcccccccCchhHHHH--
Q 041759          315 RELFVRRWALERTLALMVPGFGIGVVYYGMTLGIE-----N-----LGF--DIYLGVVFNALLEIPNLASTIPSFFLT--  380 (525)
Q Consensus       315 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--  380 (525)
                      .+.-+++. ... +..++........+...+..+.     +     .|.  .......+.++..+       +..++.  
T Consensus       268 ~~~~~~~~-~~~-~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~ii-------l~~p~~~~  338 (500)
T PRK09584        268 KGAARRKM-IVA-FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIM-------IGSPILAA  338 (500)
T ss_pred             CHHHHHHH-HHH-HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHH-------HHHHHHHH
Confidence            00111111 111 1111111111122222222211     1     121  12222233332222       444444  


Q ss_pred             --HHHHHhhcChhHHHHHHHHHHHHHHHHHHhcccc----ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhh
Q 041759          381 --FFLIQKWNRKSSLLVLFIISGICSIMAVVANDIS----NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNS  454 (525)
Q Consensus       381 --~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~  454 (525)
                        +++.+|.+..+.+.+++++.+++++.+.......    .-+.++.+...++.+++.....|...+++.+..|++.||+
T Consensus       339 ~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~  418 (500)
T PRK09584        339 IYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGF  418 (500)
T ss_pred             HHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHH
Confidence              4444444555778888999998888876653310    1123367778888899999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhc------------cCchhHHHHHHHHHHHHHHH
Q 041759          455 ATSIMRLAIIFAAIFSSVLVAAG------------SNNEFVSYGVFGLVIICCGF  497 (525)
Q Consensus       455 ~~~~~~~~~~~g~~~~p~i~~~~------------~~~~~~~~~~~~~~~~~~~~  497 (525)
                      .+|+......+|+.++..+.+..            ..+....|...++..++..+
T Consensus       419 ~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~  473 (500)
T PRK09584        419 IMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAV  473 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            99988877777777766665411            01245666666665554443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.89  E-value=4e-20  Score=181.77  Aligned_cols=377  Identities=15%  Similarity=0.114  Sum_probs=243.3

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccc---cCCchHHHHHH-HHHHHHHHHHHHhhhhHH-----
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADS---SLGRKNLLFLS-CLTMSVATSLTIFSNNLW-----  170 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr---~~Grk~~~~~~-~~~~~i~~~~~~~~~~~~-----  170 (525)
                      .+.+.+++|+   +..+.+++..+..+..++.+++.|+++||   |+||||.++++ .+...++.++.+++++.+     
T Consensus        27 l~~yl~~lg~---~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~  103 (477)
T TIGR01301        27 LTPYVQELGI---PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGD  103 (477)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccc
Confidence            4456788999   99999999999999999999999999993   39999988774 666667777777776643     


Q ss_pred             ------------HHHHHHHHHhhcccchhhhhheeeEeeecCcch--hhHHhHHHHHHHHHHHHHHHHHHhcc---C---
Q 041759          171 ------------IYSLLRFFSGISRATIGTCTIVLLTEKVGTEWR--GLVGILDSFFFTIGTLTLPAIAYTNR---S---  230 (525)
Q Consensus       171 ------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~l~~~l~~~~~---~---  230 (525)
                                  .++++-.+..++.....+...++++|.+|+++|  +.+.++.+.+.++|.++|+.++.+..   .   
T Consensus       104 ~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~  183 (477)
T TIGR01301       104 NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPF  183 (477)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc
Confidence                        333334455558888888899999999998765  57899999999999999999875431   0   


Q ss_pred             ----------CchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCC
Q 041759          231 ----------SSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHE  300 (525)
Q Consensus       231 ----------~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (525)
                                .+.|+.|++.++..++..++..+.++|.|..  .+++.++  +   +..+ .++.              +
T Consensus       184 ~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~--~~~~~~~--~---~~~~-~~~~--------------~  241 (477)
T TIGR01301       184 TKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLI--GSDDFIN--S---EAAP-PSKH--------------G  241 (477)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCC--ccccchh--h---hccc-cccc--------------c
Confidence                      2678999999998888887888889996521  0000000  0   0000 0000              0


Q ss_pred             cccccccccchhhhhhhhc-chhHHHHHHHHHHHHHHHHHHH-hhhhhcccc-cCCh-----hHHHHHH-HHHhcccccc
Q 041759          301 PAASSKESSFLSSIRELFV-RRWALERTLALMVPGFGIGVVY-YGMTLGIEN-LGFD-----IYLGVVF-NALLEIPNLA  371 (525)
Q Consensus       301 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-----~~~~~~~-~~~~~~~~~~  371 (525)
                       .  .+  ....-++.+.+ .+.+++..++.++.|++..... |..++.-++ ++.+     .++.+.- .....+.+.+
T Consensus       242 -~--~~--~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~  316 (477)
T TIGR01301       242 -E--EA--FFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSV  316 (477)
T ss_pred             -h--hh--hHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence             0  00  00011222222 2455667777777887654333 333332221 2211     1111100 0000011111


Q ss_pred             cCchhHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHhcccc----------------ccchhHHHHHHHHHHHHHHH
Q 041759          372 STIPSFFLTFFLIQKWNR-KSSLLVLFIISGICSIMAVVANDIS----------------NAGKRMRIGLELASLFSAYI  434 (525)
Q Consensus       372 ~~~~~~~~~~~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~  434 (525)
                      ...+.+++..++.+|+|+ |+...++.++.++++....+.....                .......++...+.|+....
T Consensus       317 ~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~  396 (477)
T TIGR01301       317 VLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAI  396 (477)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHH
Confidence            222666778888999985 6777888888888877776544210                00024566777888888999


Q ss_pred             HHHHHHhhhccccCc--chhhhhhHHHHHHHHHHHHHHHHHHhh----ccCchhHHHHHHHHHHHHHHHHH-HhccCCC
Q 041759          435 AYTVIFIYAIELFPT--CVRNSATSIMRLAIIFAAIFSSVLVAA----GSNNEFVSYGVFGLVIICCGFFV-ICLPETR  506 (525)
Q Consensus       435 ~~~~~~~~~~~~~p~--~~r~~~~~~~~~~~~~g~~~~p~i~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  506 (525)
                      .+.+.++++++..|+  +..|..+|+.|.+..+.+++..+..|.    ...+....+.+.++..+++.++. +.+|+.+
T Consensus       397 ~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       397 TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999995  455999999999998888877766553    22334556666666677766654 4456654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.88  E-value=3.3e-20  Score=180.37  Aligned_cols=324  Identities=17%  Similarity=0.178  Sum_probs=236.5

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCC-chHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLG-RKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFF  178 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~G-rk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  178 (525)
                      ++..-++.|+   |..|+|++.++..+...++++++|.++|| ++ +|+++.+..++.++..+.....++++.+++..++
T Consensus        25 ~~~~L~~~G~---s~~qIG~l~a~~~~~~i~~~~~~g~~aDr-~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l  100 (400)
T PF03825_consen   25 LPLYLESRGF---SGTQIGILLAVGPLARIVSPPFWGAIADR-FGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLL  100 (400)
T ss_pred             HHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            6667788889   99999999999999999999999999999 76 5788888888888877777888899999988888


Q ss_pred             HhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH--HHhcc---CCchHHHHHHHHHHHHHHHhHhhe
Q 041759          179 SGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI--AYTNR---SSSWTIIYLWTSIPTLVYSGLLYI  253 (525)
Q Consensus       179 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l--~~~~~---~~~wr~~f~~~~~~~~~~~~~~~~  253 (525)
                      ..+......|...++..+...  ++++-.+-.....++|.+++...  .....   ..+..+.+++.+...++.. ...+
T Consensus       101 ~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~-~~~l  177 (400)
T PF03825_consen  101 FSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA-GFAL  177 (400)
T ss_pred             HHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH-HHHH
Confidence            888888888888887776664  34445555666667777666432  11221   1233345666666555554 4455


Q ss_pred             eecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHH
Q 041759          254 FVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVP  333 (525)
Q Consensus       254 ~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  333 (525)
                      .+|+.|.    +++.++..+                                  +....+..+++|+|++...++..++.
T Consensus       178 ~lp~~~~----~~~~~~~~~----------------------------------~~~~~~~~~llk~~~~~~Fll~~~l~  219 (400)
T PF03825_consen  178 FLPKTPP----KRSAKESVK----------------------------------KLLGLDALKLLKNPRFLVFLLAAFLI  219 (400)
T ss_pred             hCCCCcc----ccccCCCcc----------------------------------cccchHHHHHhcCccHHHHHHHHHHH
Confidence            6777652    000000000                                  00002445789999988887877777


Q ss_pred             HHHHHHHHhhhhhcccccC-ChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcc
Q 041759          334 GFGIGVVYYGMTLGIENLG-FDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVAND  412 (525)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~  412 (525)
                      .......+.+.+.++++.| .+....+...++..+    +-++..+..+++.+|+|.|+++.++.+..++=..++....+
T Consensus       220 ~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~----aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~  295 (400)
T PF03825_consen  220 GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVV----AEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD  295 (400)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7777877777788888888 555555555554444    55588899999999999999999999999999988887743


Q ss_pred             ccccchhHHHHH----HHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHH-HHHHHHHHHHHhh
Q 041759          413 ISNAGKRMRIGL----ELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAI-IFAAIFSSVLVAA  476 (525)
Q Consensus       413 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~-~~g~~~~p~i~~~  476 (525)
                      +    ++.....    ..+.+...+..+.....++.+..|++.|++++++.+... .+|..++.++.|.
T Consensus       296 ~----~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~  360 (400)
T PF03825_consen  296 P----WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW  360 (400)
T ss_pred             C----cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3    1222222    345788888888899999999999999999999988764 7888898888884

>TIGR00788 fbt folate/biopterin transporter

Probab=99.88  E-value=5.5e-21  Score=191.39  Aligned_cols=343  Identities=11%  Similarity=0.022  Sum_probs=229.4

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCC-----chHHHHHHHHHHH-HHHHHHHhhhhHHHH-
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLG-----RKNLLFLSCLTMS-VATSLTIFSNNLWIY-  172 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~G-----rk~~~~~~~~~~~-i~~~~~~~~~~~~~l-  172 (525)
                      .+.+++++|+   +..+++...+...+...+-.+ +|+++|| ++     ||+.++++.++.+ ++....+..++.... 
T Consensus        49 ~~~l~~~lg~---s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~  123 (468)
T TIGR00788        49 SPMLTDDLGL---DGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVA  123 (468)
T ss_pred             hHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence            6777888999   999999999999999999776 9999999 97     7777888877763 443444444554444 


Q ss_pred             HHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHH---HHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHH
Q 041759          173 SLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILD---SFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       173 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~  248 (525)
                      .+.+++.+++.+...+...++..|..+ +++....+..   .....+|.++++.+ +.+.+..+||..|++.+.+.++..
T Consensus       124 ~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~  202 (468)
T TIGR00788       124 AAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQL  202 (468)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence            448899999999999999999999998 5554433333   33345899999888 455566799999999988888775


Q ss_pred             hHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHH
Q 041759          249 GLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTL  328 (525)
Q Consensus       249 ~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  328 (525)
                       +...+++|.+.....+.+.++... ....     .....                +..++.....++.+++|..++.++
T Consensus       203 -~~~~~~~E~~~~~~~~~~~~~~~~-~~~~-----~~~~~----------------~~~~~~~~~l~~~l~~~~i~~~l~  259 (468)
T TIGR00788       203 -FVSNLSKERRAFVRPRIGTYLEMN-MALL-----TLGVL----------------ANVKVQILGLRGAIQLLEIAKPLI  259 (468)
T ss_pred             -HHHHhcccccccccccccccchhh-hhhh-----hhhHH----------------HHHHHHHHHHHHHHhcHHHHHHHH
Confidence             666777885310000000000000 0000     00000                000000124555677787666555


Q ss_pred             HHHH-HHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHH
Q 041759          329 ALMV-PGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMA  407 (525)
Q Consensus       329 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~  407 (525)
                      ..++ .....+.......+.....|.++...+.......+    +.+++..+.+++.+|++.|+.+.++.++.+++.+..
T Consensus       260 fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v----~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~  335 (468)
T TIGR00788       260 FIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNL----GSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFD  335 (468)
T ss_pred             HHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHH----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCc
Confidence            4444 22111111111012224578888888888777766    777999999999999999999999988888877554


Q ss_pred             HHhccc----c-ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 041759          408 VVANDI----S-NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       408 ~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~  475 (525)
                      ......    . -.+........++..++.+..+.....++.+..|++.+|+.+++.+.+.++|..+++.+.+
T Consensus       336 ~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg  408 (468)
T TIGR00788       336 LILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGV  408 (468)
T ss_pred             eeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence            321100    0 0112234455667777777778888999999999999999999999999999999998776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.88  E-value=4.9e-20  Score=185.90  Aligned_cols=333  Identities=9%  Similarity=0.013  Sum_probs=220.6

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccc---cCCc-hHHHHHHHHHHHHHHHHHHhhh------hH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADS---SLGR-KNLLFLSCLTMSVATSLTIFSN------NL  169 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr---~~Gr-k~~~~~~~~~~~i~~~~~~~~~------~~  169 (525)
                      ...+.+.+|+   +...+|.+..+..+.-++..|+.|+++||   |+|| |+.++++.+..+++.++....+      .+
T Consensus        30 ~~yyt~v~Gl---s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~  106 (473)
T PRK10429         30 MYYYTDVVGL---SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQY  106 (473)
T ss_pred             HHHHHHhcCC---CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHH
Confidence            4455667799   99999999999999999999999999994   2798 6677778888888866664432      24


Q ss_pred             HHHHHHHHHHhhcccchhhhhheeeEeee-cCcchhhHHhHHHHHHHHHHHHHHHHHH-h---c----cCCchHHHHHHH
Q 041759          170 WIYSLLRFFSGISRATIGTCTIVLLTEKV-GTEWRGLVGILDSFFFTIGTLTLPAIAY-T---N----RSSSWTIIYLWT  240 (525)
Q Consensus       170 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~l~~~l~~-~---~----~~~~wr~~f~~~  240 (525)
                      .++++..++.+++.....+...+++.|+. ++++|.+..++...+.++|..+.+.+.. +   .    ...+|+....+.
T Consensus       107 ~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~  186 (473)
T PRK10429        107 VFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVL  186 (473)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            46667777888888888888889999998 5899999999877777777555544321 1   1    123688887777


Q ss_pred             HHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcc
Q 041759          241 SIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVR  320 (525)
Q Consensus       241 ~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  320 (525)
                      +++.++..++.++..+|.+..    ++.+.           ..                     +++.+....++.+++|
T Consensus       187 ~~~~~~~~~~~~~~~~e~~~~----~~~~~-----------~~---------------------~~~~~~~~~~~~~~~n  230 (473)
T PRK10429        187 IAFFIVSTIITLRNVHEVYSS----DNQVS-----------AE---------------------GSHLTLKDIVALIYKN  230 (473)
T ss_pred             HHHHHHHHHHHHcCceecCCc----ccccc-----------cc---------------------ccCCCHHHHHHHHhcC
Confidence            777776664556656664210    00000           00                     0000011355667788


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHH
Q 041759          321 RWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIIS  400 (525)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~  400 (525)
                      |.++..+...++............+++.+....+......+.....+    +.+++.++.+++.||+|+|+.+.++..+.
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i----~~ii~~~~~~~l~~r~gkk~~~~~~~~~~  306 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGA----ANLVTLILFPRLVKSLSRRILWAGASIFP  306 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            87666666555555544444333445554433344444444443334    55688899999999999999998888776


Q ss_pred             HHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccC-------cchhhhhhHHHHHHHHHHHHHHHHH
Q 041759          401 GICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFP-------TCVRNSATSIMRLAIIFAAIFSSVL  473 (525)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~~~~~~~~~~g~~~~p~i  473 (525)
                      .++.+.+.........+....++..++.+++.+..++..+++.+|..+       .+..|...|.......+|..+++.+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i  386 (473)
T PRK10429        307 VLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF  386 (473)
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence            655554433210001123345556667778888888888999999865       3344567788888888888888877


Q ss_pred             Hh
Q 041759          474 VA  475 (525)
Q Consensus       474 ~~  475 (525)
                      .|
T Consensus       387 ~g  388 (473)
T PRK10429        387 IG  388 (473)
T ss_pred             HH
Confidence            76

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.87  E-value=1.1e-21  Score=170.55  Aligned_cols=360  Identities=10%  Similarity=0.006  Sum_probs=231.1

Q ss_pred             ecCCCCccccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHH---hhhh
Q 041759           92 WDGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTI---FSNN  168 (525)
Q Consensus        92 ~~~~p~~~~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~---~~~~  168 (525)
                      ||. |.....+++.|.|+   +..+..++.++|...-.+.++++|++.||++|-|..-++-+....+|.+..+   ..+.
T Consensus        60 yd~-p~alq~~fk~d~ni---~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~a  135 (459)
T KOG4686|consen   60 YDA-PGALQIDFKLDSNI---EYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHA  135 (459)
T ss_pred             cCC-chhhhhhhhccccc---ceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHH
Confidence            444 55446778888888   8889999999999999999999999999989988776666666667776655   4689


Q ss_pred             HHHHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHh-------ccCCchH-----H
Q 041759          169 LWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYT-------NRSSSWT-----I  235 (525)
Q Consensus       169 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~-------~~~~~wr-----~  235 (525)
                      +|.++++|++.|+|.-.....-..|+.-|+..|+.+.++++.....-+|..+-..+ .++       .+..+-.     .
T Consensus       136 Fw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l  215 (459)
T KOG4686|consen  136 FWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWL  215 (459)
T ss_pred             HHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHH
Confidence            99999999999999988888888999999999999999999998888887653322 111       1111111     1


Q ss_pred             HH-HHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhh
Q 041759          236 IY-LWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSI  314 (525)
Q Consensus       236 ~f-~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (525)
                      .+ .......++.+ ...            .-..+++++.+++.   ++....            +++         -.-
T Consensus       216 ~~~~~tc~~slica-l~l------------g~~D~rAerilh~e---~g~~Ge------------~pk---------Ltd  258 (459)
T KOG4686|consen  216 CFEVKTCKQSLICA-LSL------------GLSDDRAERILHLE---EGFLGE------------EPK---------LTD  258 (459)
T ss_pred             HHHHHHHHHHHHHH-HHh------------hhhhhHHHHHHhhh---cCcccC------------Ccc---------ccc
Confidence            11 11111122221 110            00112222222221   111000            000         000


Q ss_pred             hhhhcchhHHHHHHHHHHHHHHHHHHHhh--hhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhH
Q 041759          315 RELFVRRWALERTLALMVPGFGIGVVYYG--MTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSS  392 (525)
Q Consensus       315 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~  392 (525)
                      ..-++ |.+|...++++..+. ..+.++.  ..++.+.+|.++..++.+.+....    -+.+..++.|.++||+|++..
T Consensus       259 v~~f~-ppfw~~~iicv~yyv-a~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~----Isav~spvfg~i~Dk~G~n~~  332 (459)
T KOG4686|consen  259 VNTFY-PPFWVLVIICVLYYV-AWFPFITLGPMFFQKRFGLSAVSAGNILSTVYG----ISAVLSPVFGAISDKYGFNLW  332 (459)
T ss_pred             ccccC-ccHHHHHHHHHHHHH-HHHHHhhhhHHHHHHhhCCChhhccchhhhhhh----hhhhhhhhHHHhHhhhcceeh
Confidence            11122 334544444433333 3333333  245566799999888888887777    666788899999999999987


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHH
Q 041759          393 LLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSV  472 (525)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~  472 (525)
                      .+.+..+..+..-....+...      ..+..+.+.|......-...|..++.+.|+++.|++.|+.+.+.++|-.+.|+
T Consensus       333 wv~~a~~~tl~~H~~l~Ft~l------sPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~I  406 (459)
T KOG4686|consen  333 WVASACILTLLGHSGLFFTFL------SPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPI  406 (459)
T ss_pred             hHHHHHHHHHHHhhhHHhhhc------cHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhh
Confidence            777666555443333332222      23445556666666665667888888999999999999999999999999999


Q ss_pred             HHhhcc--C----chhHHHHHHHHHHHHHHHHHHhccC
Q 041759          473 LVAAGS--N----NEFVSYGVFGLVIICCGFFVICLPE  504 (525)
Q Consensus       473 i~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~  504 (525)
                      +.|...  .    +....|++++.+.+....+.+++.+
T Consensus       407 iag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~  444 (459)
T KOG4686|consen  407 IAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLNK  444 (459)
T ss_pred             hhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhheec
Confidence            999521  1    2234455555555555555555533

>PRK09848 glucuronide transporter; Provisional

Probab=99.86  E-value=6.4e-19  Score=177.06  Aligned_cols=324  Identities=12%  Similarity=0.043  Sum_probs=209.6

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccc---cCCchHHH-HHHHHHHHHHHHHHHh-----hh--h
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADS---SLGRKNLL-FLSCLTMSVATSLTIF-----SN--N  168 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr---~~Grk~~~-~~~~~~~~i~~~~~~~-----~~--~  168 (525)
                      ...+++.+|+   +..++|++.+...+..++..++.|+++||   |+||||.+ .++.+...+..++...     ++  .
T Consensus        32 ~~y~~~~~gl---~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (448)
T PRK09848         32 LSYYTDVAGV---GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSK  108 (448)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchH
Confidence            4466677899   99999999999999999999999999999   23877754 5565555544444321     11  2


Q ss_pred             HHHHHHHHHHHhhcccchhhhhheeeEeeecC-cchhhHHhHHHHHH-----HHHHHHHHHHHHhccC---CchHHHHHH
Q 041759          169 LWIYSLLRFFSGISRATIGTCTIVLLTEKVGT-EWRGLVGILDSFFF-----TIGTLTLPAIAYTNRS---SSWTIIYLW  239 (525)
Q Consensus       169 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~-----~~G~~l~~~l~~~~~~---~~wr~~f~~  239 (525)
                      .+.+++..++.+++.+...+...++..+...+ ++|.+..++-..+.     .+|..++|+++.....   .+|.....+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~  188 (448)
T PRK09848        109 VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIV  188 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence            34455566777888888887777777776654 67888776665443     3555666766544321   123222233


Q ss_pred             HHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhc
Q 041759          240 TSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFV  319 (525)
Q Consensus       240 ~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  319 (525)
                      .+++.++..++.....||++.    + +              .++                       .+....++.+++
T Consensus       189 ~~v~~~~~~~~~~~~~~e~~~----~-~--------------~~~-----------------------~~~~~~~~~l~~  226 (448)
T PRK09848        189 LAIAGMVLYFICFKSTRENVV----R-I--------------VAQ-----------------------PSLKISLQTLKR  226 (448)
T ss_pred             HHHHHHHHHHHHHcCcEeccC----C-C--------------ccC-----------------------CCHHHHHHHHhC
Confidence            344444433344444555421    0 0              000                       000135778899


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHH
Q 041759          320 RRWALERTLALMVPGFGIGVVYYGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFI  398 (525)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~  398 (525)
                      +|.++...+..++............+++.++ +|.+............+    +.+++.++.+++.||+|+|+.+.++.+
T Consensus       227 n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~r~g~~~~~~~g~~  302 (448)
T PRK09848        227 NRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLV----GTVASAPLVPGMVARIGKKNTFLIGAL  302 (448)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            9987776666666655555444455666554 56554443332222222    455788899999999999999999988


Q ss_pred             HHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcc-------hhhhhhHHHHHHHHHHHHHHH
Q 041759          399 ISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTC-------VRNSATSIMRLAIIFAAIFSS  471 (525)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~r~~~~~~~~~~~~~g~~~~p  471 (525)
                      +..++.+.+.+.+..   +.+...+..++.+++.+...+...++.+|..|.+       .+|...|+.+....+|..+++
T Consensus       303 ~~~i~~~~~~~~~~~---~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~  379 (448)
T PRK09848        303 LGTCGYLLFFWVSVW---SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGG  379 (448)
T ss_pred             HHHHHHHHHHHcCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHH
Confidence            888777666554322   2334455566778888888888888888887643       458888999999999998888


Q ss_pred             HHHh
Q 041759          472 VLVA  475 (525)
Q Consensus       472 ~i~~  475 (525)
                      .+.+
T Consensus       380 ~i~g  383 (448)
T PRK09848        380 SIPA  383 (448)
T ss_pred             HHHH
Confidence            8776

>PRK11462 putative transporter; Provisional

Probab=99.84  E-value=2.2e-18  Score=172.55  Aligned_cols=324  Identities=8%  Similarity=-0.020  Sum_probs=204.1

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccc---cCCchH-HHHHHHHHHHHHHHHHHhhhh------H
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADS---SLGRKN-LLFLSCLTMSVATSLTIFSNN------L  169 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr---~~Grk~-~~~~~~~~~~i~~~~~~~~~~------~  169 (525)
                      ...+.+.+|+   +...+|.+..+.-+--++..|+.|.++||   |+|||| .++++.+..+++.+++...++      .
T Consensus        33 ~~fyt~~~Gl---~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~  109 (460)
T PRK11462         33 MFFYTDIFGI---PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM  109 (460)
T ss_pred             HHHHHHhhCC---CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            3445567799   99999999999999999999999999997   589865 556677888888777655442      4


Q ss_pred             HHHHHHHHHHhhcccchhhhhheeeEeeec-CcchhhHHhHHHHHHHHHHHHHHHHHH-hc---c----CCchHHHHHHH
Q 041759          170 WIYSLLRFFSGISRATIGTCTIVLLTEKVG-TEWRGLVGILDSFFFTIGTLTLPAIAY-TN---R----SSSWTIIYLWT  240 (525)
Q Consensus       170 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~l~~~l~~-~~---~----~~~wr~~f~~~  240 (525)
                      .++.+.-++..++.........++..|+.+ +++|++..++...+..+|..+++.+.. +.   .    ..+|+....+.
T Consensus       110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~  189 (460)
T PRK11462        110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL  189 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            566777777888888888888889999887 689999999999999998877765522 11   1    13688888887


Q ss_pred             HHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcc
Q 041759          241 SIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVR  320 (525)
Q Consensus       241 ~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  320 (525)
                      +++.++..++.+...+|.++.     +.++                                     .+..+.++.+++|
T Consensus       190 ~ii~~i~~~i~~~~~kE~~~~-----~~~~-------------------------------------~~~~~~l~~~~~N  227 (460)
T PRK11462        190 SVVAFMMLAFCFFTTKERVEA-----PPTT-------------------------------------TSMREDLRDIWQN  227 (460)
T ss_pred             HHHHHHHHHHHHhcceeccCC-----CccC-------------------------------------CCHHHHHHHHhCC
Confidence            877776664555555553210     0000                                     0001356677888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHH
Q 041759          321 RWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIIS  400 (525)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~  400 (525)
                      +.++......++.............++......+......+.....+    +.+++.++++++.||+++|+....+..+.
T Consensus       228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i----~~iig~~l~~~l~~r~gkk~~~~~~~~~~  303 (460)
T PRK11462        228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCV----GNLIGSALAKPLTDWKCKVTIFWWTNALL  303 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHH----HHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            87655544433333332222222222222221122222233333333    55588899999999999998876555544


Q ss_pred             HHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccC-------cchhhhhhHHHHHHHHHHHHHHHHH
Q 041759          401 GICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFP-------TCVRNSATSIMRLAIIFAAIFSSVL  473 (525)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~~~~~~~~~~g~~~~p~i  473 (525)
                      .+..+++.+.+..   +....++..++.+++.+...+..+++.+|..+       .+..|...+.......+|..+++.+
T Consensus       304 ~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i  380 (460)
T PRK11462        304 AVISLAMFFVPMQ---ASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGAL  380 (460)
T ss_pred             HHHHHHHHHhchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            4433333333322   12223334455566666666666777777755       2233444566556677777776666


Q ss_pred             Hh
Q 041759          474 VA  475 (525)
Q Consensus       474 ~~  475 (525)
                      .|
T Consensus       381 ~g  382 (460)
T PRK11462        381 IG  382 (460)
T ss_pred             HH
Confidence            54

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.84  E-value=3.8e-18  Score=164.07  Aligned_cols=329  Identities=12%  Similarity=0.059  Sum_probs=238.5

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccc---cCCc-hHHHHHHHHHHHHHHHHHHhhh------hH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADS---SLGR-KNLLFLSCLTMSVATSLTIFSN------NL  169 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr---~~Gr-k~~~~~~~~~~~i~~~~~~~~~------~~  169 (525)
                      +--..+.+|+   +...+|.+..+--+--++.-|+.|.+.||   |+|| |+.++.+.+.+++.+.++..++      +.
T Consensus        36 l~fYTdv~Gi---s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~  112 (467)
T COG2211          36 LFFYTDVFGL---SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKL  112 (467)
T ss_pred             HHHHhcccCC---cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcch
Confidence            3345567889   99999999999999999999999999998   6998 5567778899999999888876      35


Q ss_pred             HHHHHHHHHHhhcccchhhhhheeeEeeec-CcchhhHHhHHHHHHHHHHHHHHHH-----HHhcc---CCchHHHHHHH
Q 041759          170 WIYSLLRFFSGISRATIGTCTIVLLTEKVG-TEWRGLVGILDSFFFTIGTLTLPAI-----AYTNR---SSSWTIIYLWT  240 (525)
Q Consensus       170 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~l~~~l-----~~~~~---~~~wr~~f~~~  240 (525)
                      ...++...+.+++......+..++..|+.+ ++||.+..++-+.+.++|.++...+     ..+-.   ..||+..-.+.
T Consensus       113 ~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~  192 (467)
T COG2211         113 IYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVL  192 (467)
T ss_pred             HHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHH
Confidence            677888899999999999999999999886 5899999999999999996654333     33322   45899999999


Q ss_pred             HHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcc
Q 041759          241 SIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVR  320 (525)
Q Consensus       241 ~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  320 (525)
                      +++..+..+++++.++|.+..   +...+             +                     ..+++....+..+++|
T Consensus       193 ~vi~~i~~l~~~~~v~ER~~~---~~~~~-------------~---------------------~~~~~~~~~~~~~~~N  235 (467)
T COG2211         193 GVIGVILLLFCFFNVKERVVE---TQPTK-------------T---------------------GVKLKLKDSFLLIFKN  235 (467)
T ss_pred             HHHHHHHHHHHHHHhhcccCc---cccCc-------------c---------------------cccccHHHHHHHHHcc
Confidence            988888887777777774320   00000             0                     0000011345568889


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHH
Q 041759          321 RWALERTLALMVPGFGIGVVYYGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFII  399 (525)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~  399 (525)
                      +.++...+..++...+.+.......++.+. +|.+.............    +.+++.++..++.+|+|+|+++.++.++
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~----~~l~~~~~~p~L~~~~gkk~~~~~~~~~  311 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGA----GLLIGLILWPRLVKKFGKKKLFLIGLLL  311 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHH----HHHHHHHhHHHHHHHhchHHHHHHHHHH
Confidence            887766665555554444443333444333 44444444444333333    4447789999999999999999999999


Q ss_pred             HHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccC-------cchhhhhhHHHHHHHHHHHHHHHH
Q 041759          400 SGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFP-------TCVRNSATSIMRLAIIFAAIFSSV  472 (525)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~~~~~~~~~~g~~~~p~  472 (525)
                      ..++.+++.+.+..   +....++..++.+++.+...++.+++.+|..+       .+..|...+...++.-+|..++..
T Consensus       312 ~~i~~~~~~f~~~~---~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~  388 (467)
T COG2211         312 LAVGYLLLYFTPAG---SVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGF  388 (467)
T ss_pred             HHHHHHHHHhhcCc---chHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence            99999998888743   34466667788889999999999999998854       334567778878777777776665


Q ss_pred             HHh
Q 041759          473 LVA  475 (525)
Q Consensus       473 i~~  475 (525)
                      +.|
T Consensus       389 ~~g  391 (467)
T COG2211         389 IPG  391 (467)
T ss_pred             HHH
Confidence            554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.84  E-value=2.2e-19  Score=179.12  Aligned_cols=326  Identities=15%  Similarity=0.131  Sum_probs=241.4

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccc---cCCchH-HHHHHHHHHHHHHHHHHhh-h-------
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADS---SLGRKN-LLFLSCLTMSVATSLTIFS-N-------  167 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr---~~Grk~-~~~~~~~~~~i~~~~~~~~-~-------  167 (525)
                      .+-+.+.+++   ++...|++..+..+-.++..|+.|.++||   |+|||| .++++.+..+++.+++... +       
T Consensus        25 ~~f~~~~~gl---~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~  101 (428)
T PF13347_consen   25 LYFYTDVLGL---SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA  101 (428)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence            4556677799   99999999999999999999999999993   399765 5567888888888887765 4       


Q ss_pred             hHHHHHHHHHHHhhcccchhhhhheeeEeeec-CcchhhHHhHHHHHHHHHHHHHHHH-HHhc---c-C---CchHHHHH
Q 041759          168 NLWIYSLLRFFSGISRATIGTCTIVLLTEKVG-TEWRGLVGILDSFFFTIGTLTLPAI-AYTN---R-S---SSWTIIYL  238 (525)
Q Consensus       168 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~---~-~---~~wr~~f~  238 (525)
                      ...++.+..++..++.........++..|+.+ +++|.+..+.-..+..+|.++...+ ..+.   . .   .+|++...
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~  181 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL  181 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence            23456777788899999999999999999998 4789999999999888888755544 2222   1 1   27999999


Q ss_pred             HHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhh
Q 041759          239 WTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELF  318 (525)
Q Consensus       239 ~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  318 (525)
                      +.+++.++..++..+.++|.++      +.++.                                 +++.+..+.++.++
T Consensus       182 v~~iv~~v~~~i~~~~~ke~~~------~~~~~---------------------------------~~~~~~~~~~~~~~  222 (428)
T PF13347_consen  182 VLAIVGLVFFLITFFFVKERSV------EVTEQ---------------------------------EKKISLRDSLRSLF  222 (428)
T ss_pred             HHHHHHHHHhhhhhheeeeccc------ccccc---------------------------------ccccccccchhhhc
Confidence            9999999888777777777210      00000                                 00001114678889


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHH
Q 041759          319 VRRWALERTLALMVPGFGIGVVYYGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLF  397 (525)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~  397 (525)
                      +||.++...+..++.+..........+++.+. .+.+ ...........+    +.+++.++.+++.||+|+|+.+..+.
T Consensus       223 ~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~----~~~v~~~~~~~l~~r~gk~~~~~~~~  297 (428)
T PF13347_consen  223 RNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFV----ASIVGSPLWGRLSKRFGKKKVYIIGL  297 (428)
T ss_pred             ccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHH----HHHHHHHHHHHHHHHccceeehhhhH
Confidence            99987777776666666555444444444444 3333 333444444444    66689999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCc-------chhhhhhHHHHHHHHHHHHHH
Q 041759          398 IISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPT-------CVRNSATSIMRLAIIFAAIFS  470 (525)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~r~~~~~~~~~~~~~g~~~~  470 (525)
                      .+.+++.+.+.+....   +....++..++.+++.+..+...+++.+|..+.       +..|..+|+.+....++..++
T Consensus       298 ~~~~~~~~~~~~~~~~---~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la  374 (428)
T PF13347_consen  298 LLAALGFLLLFFLGPG---SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLA  374 (428)
T ss_pred             HHHHHHHHHHHHHHhh---hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHH
Confidence            9999998888777622   245778888889999999999999999998863       345788888888888888877


Q ss_pred             HHHHh
Q 041759          471 SVLVA  475 (525)
Q Consensus       471 p~i~~  475 (525)
                      +.+.+
T Consensus       375 ~~i~g  379 (428)
T PF13347_consen  375 GAIVG  379 (428)
T ss_pred             HHHHH
Confidence            77665

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.83  E-value=2e-18  Score=160.53  Aligned_cols=352  Identities=15%  Similarity=0.049  Sum_probs=257.7

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHH-HHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHhhcccchhh
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNL-LFLSCLTMSVATSLTIFSNN---LWIYSLLRFFSGISRATIGT  188 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~-~~~~~~~~~i~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~  188 (525)
                      +....|...++..+-.++.+++.|.++|+ .|+||. +-+...+..++.++..++++   ++..++...+..++......
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~V  134 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNV  134 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhe
Confidence            66788899999999999999999999999 996554 55556666666777777654   45556667888999998899


Q ss_pred             hhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH--Hhc-----------------cCCchHHHHHHHHHHHHHHHh
Q 041759          189 CTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA--YTN-----------------RSSSWTIIYLWTSIPTLVYSG  249 (525)
Q Consensus       189 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~--~~~-----------------~~~~wr~~f~~~~~~~~~~~~  249 (525)
                      ...+++.+..++++-++..++-.....+|..+.-++.  .+.                 ....=|..+.+.++..++..+
T Consensus       135 fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~i  214 (438)
T COG2270         135 FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFAL  214 (438)
T ss_pred             ehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHh
Confidence            9999999999998888887766665566665544332  111                 124578889999998888887


Q ss_pred             HhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHH
Q 041759          250 LLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLA  329 (525)
Q Consensus       250 ~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  329 (525)
                      ..++.++|.++-.  ........+..+++                                +.+++++.+++++...++.
T Consensus       215 Pm~~~v~~~~~~~--~~~~~~l~~g~k~L--------------------------------~~t~k~i~~~~~i~~FLiA  260 (438)
T COG2270         215 PMILNVHDAEKIS--SPPPTALRNGFKEL--------------------------------KSTFKEIRGRKNLVLFLIA  260 (438)
T ss_pred             HHHhccccccccc--ccchHHHHHHHHHH--------------------------------HHHHHHHhcccchHHHHHH
Confidence            8888888765310  01111112222222                                1477888888887777776


Q ss_pred             HHHHHHHHHHHHhhhhhc-ccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHH
Q 041759          330 LMVPGFGIGVVYYGMTLG-IENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAV  408 (525)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~  408 (525)
                      .++..-+.+.....-..+ ...+|.+..+...+....++    .+++|.++.|++.||+|.|+++.++.++..+..+...
T Consensus       261 ~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~v----vA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~  336 (438)
T COG2270         261 RFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSV----VAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI  336 (438)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH
Confidence            666655554443333333 44788887776666666666    6669999999999999999999999888887777766


Q ss_pred             HhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh---ccCchhHHH
Q 041759          409 VANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA---GSNNEFVSY  485 (525)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~---~~~~~~~~~  485 (525)
                      +....     ....++.++.+...+..++..-++..++.|+++.++.+|+++..+..+++++|++.+.   ..+.....+
T Consensus       337 ~~~~~-----~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~  411 (438)
T COG2270         337 FLEGE-----LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV  411 (438)
T ss_pred             Hcccc-----HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence            65544     3566777888899999999999999999999999999999999999999999999984   223345556


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCC
Q 041759          486 GVFGLVIICCGFFVICLPETRGS  508 (525)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~  508 (525)
                      ..+.++..++.++.+.+|+.+++
T Consensus       412 ~~i~vll~iGl~~L~~v~~~~~~  434 (438)
T COG2270         412 LSIIVLLLIGLLLLLRVKVPGRR  434 (438)
T ss_pred             HHHHHHHHhhHhhEEeecCCCCc
Confidence            66666666777777777665443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.82  E-value=3.2e-17  Score=162.04  Aligned_cols=349  Identities=10%  Similarity=-0.004  Sum_probs=206.4

Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccC-CchHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHH
Q 041759          102 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSL-GRKNLLFLSCLTMSVATSLTIFSN-NLWIYSLLRFFS  179 (525)
Q Consensus       102 ~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~-Grk~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~  179 (525)
                      .+.+++|+   ++.+.+.+.+.+.....++.+++|+++|| + ||||+++++.++.+++.++.+..+ +...+.++..+.
T Consensus        35 yL~~~lgl---s~~~a~~i~~~~~~~~~l~~ligG~LaDR-ilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li  110 (493)
T PRK15462         35 YLTNQLKY---DDNHAYELFSAYCSLVYVTPILGGFLADK-VLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAII  110 (493)
T ss_pred             HHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence            34566899   99999999999999999999999999999 9 999999999999999988776543 223344444455


Q ss_pred             hhcccchhhhhheeeEeeecCc--chhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeec
Q 041759          180 GISRATIGTCTIVLLTEKVGTE--WRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVS  256 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lp  256 (525)
                      ++|.|...+...++++|.+|++  +|...+++...+.++|..++|.+ +++....|||+.|.+.++..++.. +.+....
T Consensus       111 ~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l-i~~~~~~  189 (493)
T PRK15462        111 VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL-VIFLCGN  189 (493)
T ss_pred             HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH-HHHHHhh
Confidence            5666666677778899999875  78999999999999999999998 566667899999998766444433 2222211


Q ss_pred             CCc-hHhh-hcCCHHHHHHHH---------H----hhCCCcCCccchhhhhh---------h--ccCCCCcccccccccc
Q 041759          257 ESP-RWLF-MQGRQEEAVEVI---------K----SLSPIKDSNQLSLSLVS---------A--VSFGHEPAASSKESSF  310 (525)
Q Consensus       257 esp-~~~~-~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~---------~--~~~~~~~~~~~~~~~~  310 (525)
                      +.. +... .+++.++.+...         .    -.....-..+......-         .  ....+ .+++      
T Consensus       190 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------  262 (493)
T PRK15462        190 RHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKA-ENQK------  262 (493)
T ss_pred             hhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHH------
Confidence            110 0000 000000000000         0    00000000000000000         0  00000 0000      


Q ss_pred             hhhhhhhhcchh--HHHHHHHHHHHHHHHHHHHhhhhhcccc------cC--ChhHHHHHHHHHhcccccccCchhHHHH
Q 041759          311 LSSIRELFVRRW--ALERTLALMVPGFGIGVVYYGMTLGIEN------LG--FDIYLGVVFNALLEIPNLASTIPSFFLT  380 (525)
Q Consensus       311 ~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (525)
                             -|+|-  +....+...+.|.........+.++.++      .|  .++.+...++.+..+       +.+++.
T Consensus       263 -------er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii-------~l~P~~  328 (493)
T PRK15462        263 -------QRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVM-------LCGVFL  328 (493)
T ss_pred             -------HHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHH-------HHHHHH
Confidence                   00000  0111111122222222222333333322      12  334444445555444       666666


Q ss_pred             HHHHHhhcC--hh-----HHHHHHHHHHHHHHHHHHhccc----cccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCc
Q 041759          381 FFLIQKWNR--KS-----SLLVLFIISGICSIMAVVANDI----SNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPT  449 (525)
Q Consensus       381 ~~l~d~~g~--~~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  449 (525)
                      .++-.|..|  |.     -+.+++++.+++++++.+....    ...+..+.+...++...+.....|+..++++++.|+
T Consensus       329 a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~  408 (493)
T PRK15462        329 AWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIP  408 (493)
T ss_pred             HHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChH
Confidence            666555522  21     2667888888887766543211    112344677788888899999999999999999999


Q ss_pred             chhhhhhHHHHHHH-HHHHHHHHHHHhh
Q 041759          450 CVRNSATSIMRLAI-IFAAIFSSVLVAA  476 (525)
Q Consensus       450 ~~r~~~~~~~~~~~-~~g~~~~p~i~~~  476 (525)
                      +.++..+|...... .+|..++..+.+.
T Consensus       409 ~~~g~~mg~w~l~~~~~~~~~~g~~~~~  436 (493)
T PRK15462        409 GVTGVLTGIYMLLSGAIANYLAGVIADQ  436 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999987644 6777777666653

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.82  E-value=2.6e-18  Score=163.70  Aligned_cols=356  Identities=15%  Similarity=0.103  Sum_probs=220.1

Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHH--HHHHHHHH-Hhh----hhHH-HHH
Q 041759          102 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLT--MSVATSLT-IFS----NNLW-IYS  173 (525)
Q Consensus       102 ~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~--~~i~~~~~-~~~----~~~~-~l~  173 (525)
                      -+.+.-|+   +..++|.+.++..+...+.+++.|.++|| +|.||-++..+.+  ...+.+.. .+.    .|++ ..+
T Consensus        33 WL~~~~GL---s~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~i  108 (412)
T PF01306_consen   33 WLTQVAGL---SGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAI  108 (412)
T ss_dssp             HHHHHH------HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHH
T ss_pred             HHccccCC---CHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445899   99999999999999999999999999999 9966654433322  22222222 222    2332 333


Q ss_pred             HHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhHhhe
Q 041759          174 LLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYI  253 (525)
Q Consensus       174 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~~f~~~~~~~~~~~~~~~~  253 (525)
                      ++-+..|+......|+..+++.++.  ++.+.=.|-..++.++|.+++..++..+-+.+-+..|++....+++..++..+
T Consensus       109 ig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~  186 (412)
T PF01306_consen  109 IGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLL  186 (412)
T ss_dssp             HTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555666666555443  33344466677788888888887754443456778888877776666644444


Q ss_pred             eecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHH
Q 041759          254 FVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVP  333 (525)
Q Consensus       254 ~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  333 (525)
                      .-|+.++.....+.                 .                + .++++...+...+++|+|++|...+.....
T Consensus       187 ~~~~~~~~~~~~~~-----------------~----------------~-~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~  232 (412)
T PF01306_consen  187 LKPDVPPQAEVADA-----------------L----------------G-AKKDKVSLKDVLSLFKMRNFWFFVLFVIGV  232 (412)
T ss_dssp             S---SSSSS-SSTT-----------------S----------------S-S------HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             cCCcCchhhhhhcc-----------------c----------------c-cCCCCCcHHHHHHHhcchhHHHHHHHHHHH
Confidence            44443210000000                 0                0 000000013567899999988766665555


Q ss_pred             HHHHHHHHhhhhhcc----cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHH
Q 041759          334 GFGIGVVYYGMTLGI----ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVV  409 (525)
Q Consensus       334 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~  409 (525)
                      ...........+.+.    ++.+.+....+.+.++..+    .-++...+.+++.+|+|.|+.++++..++.+-.....+
T Consensus       233 ~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~----~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~  308 (412)
T PF01306_consen  233 AAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVF----LEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF  308 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHH----HHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh
Confidence            444443332233333    3333444445555554444    56688899999999999999999999999999888888


Q ss_pred             hccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHH-HHHHHHHHHHHHHHHhh--ccCchhHHHH
Q 041759          410 ANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIM-RLAIIFAAIFSSVLVAA--GSNNEFVSYG  486 (525)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~-~~~~~~g~~~~p~i~~~--~~~~~~~~~~  486 (525)
                      .++.     +.....-.+-++-.........-|+.+.+|++..++...+. +....+|..+.+.+.|.  +..+....|+
T Consensus       309 ~~~~-----~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyl  383 (412)
T PF01306_consen  309 ATNP-----WVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYL  383 (412)
T ss_dssp             --SH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHH
Confidence            7665     46777778888888888888899999999999988888876 45568888888888884  4445566787


Q ss_pred             HHHHHHHHHHHHH-HhccCCC
Q 041759          487 VFGLVIICCGFFV-ICLPETR  506 (525)
Q Consensus       487 ~~~~~~~~~~~~~-~~~~~~~  506 (525)
                      +.+.+.+...++. +.+++.+
T Consensus       384 img~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  384 IMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HHHHHHHHHHHHHHHHS--SS
T ss_pred             HHHHHHHHHHHHheeeecCCC
Confidence            7777766555544 4454433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.78  E-value=3.5e-17  Score=154.86  Aligned_cols=271  Identities=12%  Similarity=0.033  Sum_probs=183.9

Q ss_pred             HhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHH-hccC------------
Q 041759          164 IFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAY-TNRS------------  230 (525)
Q Consensus       164 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~-~~~~------------  230 (525)
                      +...+|+.++++-++.|.|.+...+....++++..+++++++.+++.+.++++|..++|+++. ++..            
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            345789999999999999999999999999999999999999999999999999999999943 3311            


Q ss_pred             ----CchHHHHHHHHHHHHHHHhH-hheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCccccc
Q 041759          231 ----SSWTIIYLWTSIPTLVYSGL-LYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASS  305 (525)
Q Consensus       231 ----~~wr~~f~~~~~~~~~~~~~-~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (525)
                          .+|+++|++.+.+.++..++ .+.-+||.+.      ++++  +        .+               ++ +  .
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~--~--------~~---------------~~-~--~  130 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA--R--------VS---------------SG-D--T  130 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc--c--------cc---------------cc-c--c
Confidence                37999999776665555422 2223344210      0000  0        00               00 0  0


Q ss_pred             ccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhccc---ccCChhHHHHHHHHHhcccccccCchhHHHHHH
Q 041759          306 KESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIE---NLGFDIYLGVVFNALLEIPNLASTIPSFFLTFF  382 (525)
Q Consensus       306 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (525)
                            ...++++++|..+...+..++............+.++.   .+|.+....+...+....    +.++|+++.++
T Consensus       131 ------~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~----~~~iGr~~~~~  200 (310)
T TIGR01272       131 ------TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWG----GAMVGRFIGSA  200 (310)
T ss_pred             ------cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence                  01123455665554433333333233233333344443   258888888888877777    88899999999


Q ss_pred             HHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHH
Q 041759          383 LIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLA  462 (525)
Q Consensus       383 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~  462 (525)
                      +.||+++|+.+.++..+..++.++.......      ......++.+++.+..+|...+...+..|++ .+++.++. ..
T Consensus       201 l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~------~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~  272 (310)
T TIGR01272       201 VMPMISQGRYLAFNAFLAVLLSIGAALTHGY------VAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CL  272 (310)
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HH
Confidence            9999999998888877777766544443222      2233555778999999999999999988865 35666664 56


Q ss_pred             HHHHHHHHHHHHhh--ccCchhHHHH
Q 041759          463 IIFAAIFSSVLVAA--GSNNEFVSYG  486 (525)
Q Consensus       463 ~~~g~~~~p~i~~~--~~~~~~~~~~  486 (525)
                      ..+|+.+.|.+.|.  +..+....++
T Consensus       273 ~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       273 AIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             HHhcchHHHHHHHHHHHhccchHHHH
Confidence            78999999998885  3234445544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.76  E-value=6.4e-17  Score=151.28  Aligned_cols=323  Identities=11%  Similarity=0.068  Sum_probs=210.5

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh------hhHH--HHHHHHHHHhhccc
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS------NNLW--IYSLLRFFSGISRA  184 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~------~~~~--~l~~~r~l~G~~~~  184 (525)
                      +....-|+.-+|++.+....+++-|+.|+ +|-|...+++..+..+|..+-..+      +.++  ....+..+.+.+.-
T Consensus        77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~  155 (480)
T KOG2563|consen   77 SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQP  155 (480)
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhh
Confidence            55667799999999999999999999999 999999999999999999987665      2345  67788888888877


Q ss_pred             chhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhcc-------CCchHH--HHHHHHHHHHHHHhHhheee
Q 041759          185 TIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNR-------SSSWTI--IYLWTSIPTLVYSGLLYIFV  255 (525)
Q Consensus       185 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~-------~~~wr~--~f~~~~~~~~~~~~~~~~~l  255 (525)
                      .....-..+..-|+++++|..+..+-.++..+|.+++.++.-++-       +..|..  .|+...++..+.+++..+..
T Consensus       156 Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~  235 (480)
T KOG2563|consen  156 FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVF  235 (480)
T ss_pred             HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            666665666778999999999999999999999998888855432       334655  45555555544443444444


Q ss_pred             cCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHH
Q 041759          256 SESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGF  335 (525)
Q Consensus       256 pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  335 (525)
                      ++.|+..   ....+...        . +                       .+...+.+++++++++...++...+...
T Consensus       236 ~~~P~tP---ps~s~~~~--------~-~-----------------------~~f~~si~~~~~n~~F~il~~~ygi~~g  280 (480)
T KOG2563|consen  236 TKKPPTP---PSASQAAL--------Q-D-----------------------ASFPKSIKSCFKNRQFIILAICYGIGLG  280 (480)
T ss_pred             CCCCCCC---CchhHhhh--------h-c-----------------------CcHHHHHHHHHcCccHHHHHHHHhhhHH
Confidence            4433210   00000000        0 0                       0012578889999875443333332222


Q ss_pred             HHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChh-HHHHHHHHHHHHHHHHHHhcccc
Q 041759          336 GIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKS-SLLVLFIISGICSIMAVVANDIS  414 (525)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~  414 (525)
                      .....+..+...+...|++...++....+..+    ++++++.++|.+.||.+.-+ ...+......++.+.+...... 
T Consensus       281 ~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv----~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~-  355 (480)
T KOG2563|consen  281 LFNSLSTLLNLALCPSGYEGVFAGYIGALMIV----AGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLF-  355 (480)
T ss_pred             HHHHHHHHhhhccccccCCccccchhHHHHHH----HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-
Confidence            22223333332233334444445555555555    66699999999999987644 3444444444442222222222 


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          415 NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      ..+.+..+....+.+++.....|+..-+..|..-+..-++..|+.+..+.+-+++-.++.+.
T Consensus       356 ~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~  417 (480)
T KOG2563|consen  356 LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGI  417 (480)
T ss_pred             CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHH
Confidence            12233566666777777788888888888888656666888999998888877777777763

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.71  E-value=5.4e-14  Score=131.76  Aligned_cols=326  Identities=14%  Similarity=0.139  Sum_probs=229.0

Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCC-----chHH-HHHHHHHHHHHHHHHHhh-----h---
Q 041759          102 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLG-----RKNL-LFLSCLTMSVATSLTIFS-----N---  167 (525)
Q Consensus       102 ~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~G-----rk~~-~~~~~~~~~i~~~~~~~~-----~---  167 (525)
                      .+..|+++   .....+.+.+...+... ..+.+|+.+|+ .+     ||.. +..|.++...+..+..++     .   
T Consensus         5 VMIvEL~v---pA~lv~~lval~~~~ap-~R~~~G~~SD~-~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~   79 (403)
T PF03209_consen    5 VMIVELGV---PAWLVALLVALHYLVAP-LRVWFGHRSDT-HPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQ   79 (403)
T ss_pred             hHHHHhcc---HHHHHHHHHHHHHHHHH-HHHHhcccccc-CcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            46678999   89999999999888765 58889999999 77     6654 455777776666655543     2   


Q ss_pred             ----hH--H--HHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHH
Q 041759          168 ----NL--W--IYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYL  238 (525)
Q Consensus       168 ----~~--~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~  238 (525)
                          +.  +  ...+.-.+.|+|.+...+...++++|..|+++|+++.++.....-+|.+++..+ +.++++++-.-..-
T Consensus        80 ~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~  159 (403)
T PF03209_consen   80 QSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQ  159 (403)
T ss_pred             ccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHH
Confidence                12  2  344556788999999999999999999999999999999999999999999887 77887665433332


Q ss_pred             HH---HHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhh
Q 041759          239 WT---SIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIR  315 (525)
Q Consensus       239 ~~---~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (525)
                      +.   ++..++.. +...+=.|.+.       .+.           .                  ..+++++.+....++
T Consensus       160 v~~~~a~i~~~l~-~ia~wg~E~r~-------~~~-----------~------------------~~~~~~~~~f~~a~~  202 (403)
T PF03209_consen  160 VIQGVALIALLLN-LIALWGQEPRR-------SRR-----------A------------------AAAERPRPPFREAWR  202 (403)
T ss_pred             HHHHHHHHHHHHH-HHHHHhcccCC-------ccc-----------c------------------cCCCCCCccHHHHHH
Confidence            22   22222222 11111122110       000           0                  000001111124677


Q ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHhhh-hhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHH-hhcChhHH
Q 041759          316 ELFVRRWALERTLALMVPGFGIGVVYYGM-TLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQ-KWNRKSSL  393 (525)
Q Consensus       316 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d-~~g~~~~~  393 (525)
                      ++..+|+.++.+...++..+..++..-.+ ||--+.+|++..++.-+++....    +.++|..+.+++.. |.++++..
T Consensus       203 ~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~----G~L~G~~~~g~~l~~~~~~~~~a  278 (403)
T PF03209_consen  203 QVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGG----GTLLGMLLAGFLLSRRLGKKRTA  278 (403)
T ss_pred             HHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCCchHHH
Confidence            88888887777777766666655555544 44445589999999999888888    88888888888776 67788888


Q ss_pred             HHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHH
Q 041759          394 LVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVL  473 (525)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i  473 (525)
                      .+++....+++.++......  .+.+.+....++.|++.+.......+...++.+++..|..+|.-...+.++..++.++
T Consensus       279 ~~G~~~~~~~f~lii~a~~~--~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~  356 (403)
T PF03209_consen  279 ALGCLLGALAFALIILAGPL--GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFL  356 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888777665443  2234677788888899888888888888899888888999998888886666666555


Q ss_pred             Hh
Q 041759          474 VA  475 (525)
Q Consensus       474 ~~  475 (525)
                      .|
T Consensus       357 GG  358 (403)
T PF03209_consen  357 GG  358 (403)
T ss_pred             HH
Confidence            54

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.65  E-value=1.3e-17  Score=167.75  Aligned_cols=359  Identities=14%  Similarity=0.170  Sum_probs=3.0

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh------------
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN------------  167 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~------------  167 (525)
                      +++++++|++   +..+.|++.+.+-++..+..++..++++| ..|-|.+-+|.+++++|++++++-+            
T Consensus        26 lttiErRF~l---~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~  101 (539)
T PF03137_consen   26 LTTIERRFGL---SSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEAS  101 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccc
Confidence            8899999999   99999999999999999999999999999 7777888899999999999877510            


Q ss_pred             --------------------------------------hHHHHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhH
Q 041759          168 --------------------------------------NLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGIL  209 (525)
Q Consensus       168 --------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  209 (525)
                                                            -++.++++.++.|+|....++...+|+-|..++++-+..+|+
T Consensus       102 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi  181 (539)
T PF03137_consen  102 NSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGI  181 (539)
T ss_dssp             --------------------------------------------------SSS---------------------------
T ss_pred             ccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhh
Confidence                                                  135788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcc---------C-------------C-chHHHHHHHHHHHHHHHhHhheeecCCchHhhhcC
Q 041759          210 DSFFFTIGTLTLPAIAYTNR---------S-------------S-SWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQG  266 (525)
Q Consensus       210 ~~~~~~~G~~l~~~l~~~~~---------~-------------~-~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~  266 (525)
                      ..+...+|.++|.+++....         .             . .|..-|++.+++.++.. +..+++|+...   .+.
T Consensus       182 ~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a-ipl~~FPk~lp---~~~  257 (539)
T PF03137_consen  182 LYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA-IPLFFFPKKLP---GTS  257 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH-HHHHcCCccCC---Ccc
Confidence            99999999999998865321         0             1 26667777788777777 55555665321   110


Q ss_pred             CHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 041759          267 RQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTL  346 (525)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (525)
                      +.++.++. ++  + +.++...+   +..+++......++.+......+++++||.+....+......+.......+.|-
T Consensus       258 ~~~~~~~~-~~--~-~~~~~~~~---~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pK  330 (539)
T PF03137_consen  258 ERQEEKES-SE--R-KEEDSDKD---SFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPK  330 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccchhhh-hh--c-chhhhhhh---cccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000000 00  0 00000000   000000000001112223357788999998776666666655555444444444


Q ss_pred             -cccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhc--ChhHHHHHHHHHHHHHHH---HHHhc--c------
Q 041759          347 -GIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWN--RKSSLLVLFIISGICSIM---AVVAN--D------  412 (525)
Q Consensus       347 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g--~~~~~~~~~~~~~~~~~~---~~~~~--~------  412 (525)
                       +-.+++.++..+..+.+...+|   +.++|.+++|++.+|++  .|..+....++..++.+.   ..+..  +      
T Consensus       331 ylE~QF~~sas~A~~l~G~v~ip---~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv  407 (539)
T PF03137_consen  331 YLESQFGLSASQASLLTGIVSIP---GAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGV  407 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhCCCHHHHHHHHhhhhcc---hhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeee
Confidence             4455888988888888776663   45578889999999975  344444443333333322   11110  0      


Q ss_pred             ---c-------c--------------------------c--cchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhh
Q 041759          413 ---I-------S--------------------------N--AGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNS  454 (525)
Q Consensus       413 ---~-------~--------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~  454 (525)
                         .       .                          .  ..+....+..++..+..+..........-..+|+++|+.
T Consensus       408 ~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~  487 (539)
T PF03137_consen  408 TVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSF  487 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcch
Confidence               0       0                          0  011122223333333333333444555667889999999


Q ss_pred             hhHHHHHHH-HHHHHHHHHHHhh
Q 041759          455 ATSIMRLAI-IFAAIFSSVLVAA  476 (525)
Q Consensus       455 ~~~~~~~~~-~~g~~~~p~i~~~  476 (525)
                      +.|+...+. -+|.+-+|++.|.
T Consensus       488 AlGv~~~~~rllg~IPgPIifG~  510 (539)
T PF03137_consen  488 ALGVQWLIIRLLGFIPGPIIFGA  510 (539)
T ss_dssp             -----------------------
T ss_pred             hhhHHHHHHHhhcCcchHHHHhH
Confidence            999998776 5677889999985

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.65  E-value=2.8e-14  Score=136.24  Aligned_cols=379  Identities=13%  Similarity=0.051  Sum_probs=231.4

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN--NLWIYSLLRF  177 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~  177 (525)
                      ..+..+.+|+   ++.++.-+.+.|.--.=+..+++|+++||..|+|+++..|.++..+|-++.+.+.  +...+.++-+
T Consensus        49 ~~~~~~gLg~---~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~  125 (498)
T COG3104          49 YYQLGDGLGF---DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLA  125 (498)
T ss_pred             HHhccccCCc---ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHH
Confidence            4444555778   8888777777777777778899999999988999999999999999999999984  7889999999


Q ss_pred             HHhhcccchhhhhheeeEeeecC--cchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhhee
Q 041759          178 FSGISRATIGTCTIVLLTEKVGT--EWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIF  254 (525)
Q Consensus       178 l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  254 (525)
                      +.++|.|..=+...+++.|.+|+  .+|...++++.++.++|.+++|++ +++....||+..|...++-..+.+ +.+..
T Consensus       126 ~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl-~~f~~  204 (498)
T COG3104         126 LIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGL-VIFLL  204 (498)
T ss_pred             HHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-HHHHH
Confidence            99999999999999999999985  357778999999999999999998 777788999999999888777666 33333


Q ss_pred             ecC----CchHhhhcC-CHHHHHHHH----HhhCCC-----cCCccchhhhhhhccCCCCcccccccccchhhhhhhhc-
Q 041759          255 VSE----SPRWLFMQG-RQEEAVEVI----KSLSPI-----KDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFV-  319 (525)
Q Consensus       255 lpe----sp~~~~~~~-~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  319 (525)
                      .+.    ++..-..+. +..+.....    ......     .+.+..........-....           ..+.+.++ 
T Consensus       205 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~-----------~~~~~~~~~  273 (498)
T COG3104         205 GRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAI-----------IYFAEAFRS  273 (498)
T ss_pred             ccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhcc
Confidence            332    110000000 000000000    000000     0000000000000000000           00000000 


Q ss_pred             -----ch-h---HHHHHHHHHHHHHHHHHHHhhhhhcc-----cc-c--CChhHHHHHHHHHhcccccccCchhHHHHHH
Q 041759          320 -----RR-W---ALERTLALMVPGFGIGVVYYGMTLGI-----EN-L--GFDIYLGVVFNALLEIPNLASTIPSFFLTFF  382 (525)
Q Consensus       320 -----~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (525)
                           .+ +   ....++...+.|.........+..+.     .+ +  ..++.+...+..+.-+       +..++..+
T Consensus       274 ~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Ii-------i~~pI~a~  346 (498)
T COG3104         274 PKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFII-------LFSPILAA  346 (498)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHH-------HHHHHHHH
Confidence                 00 0   11112222222222222222222222     11 1  2344444444444444       66666667


Q ss_pred             HHHhhcCh-------hHHHHHHHHHHHHHHHHHHh----cc-ccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcc
Q 041759          383 LIQKWNRK-------SSLLVLFIISGICSIMAVVA----ND-ISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTC  450 (525)
Q Consensus       383 l~d~~g~~-------~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  450 (525)
                      +..|.+++       .-+.++..+++.+++++...    .. ....+.++.+...++..++.-...|+..+++....|+.
T Consensus       347 l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~  426 (498)
T COG3104         347 LWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPA  426 (498)
T ss_pred             HHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHH
Confidence            77674333       23456666666666666554    11 21234557788888999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhh--------ccCchhHHHHHHHHHHHHHHHHHH
Q 041759          451 VRNSATSIMRLAIIFAAIFSSVLVAA--------GSNNEFVSYGVFGLVIICCGFFVI  500 (525)
Q Consensus       451 ~r~~~~~~~~~~~~~g~~~~p~i~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  500 (525)
                      ..+..++........|+.++..+.+.        ........|+.++...++..+..+
T Consensus       427 ~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~  484 (498)
T COG3104         427 LKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL  484 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999998888888887777666652        112344556666666555444433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.64  E-value=9.1e-15  Score=146.86  Aligned_cols=303  Identities=17%  Similarity=0.168  Sum_probs=211.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      .+.++++..+..++....+...                                     +..+.+.|++   +..+.|++
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~-------------------------------------IttiErRF~i---~Ss~sG~I  137 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSV-------------------------------------ITTIERRFKI---SSSQSGLI  137 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhh-------------------------------------hhhhhhhcCC---CCCcceeE
Confidence            5666666677777666555555                                     8899999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh---------------------------------
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN---------------------------------  167 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~---------------------------------  167 (525)
                      .+.+=++..+...+..+++-| .-|-+.+-+|.+++++++++.++-+                                 
T Consensus       138 ~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~  216 (735)
T KOG3626|consen  138 ASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKST  216 (735)
T ss_pred             eeecccchhhhhHhHHHhccc-cCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCc
Confidence            999999999999999999999 7777888999999999999988720                                 


Q ss_pred             -------------------hHHHHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc
Q 041759          168 -------------------NLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN  228 (525)
Q Consensus       168 -------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~  228 (525)
                                         -+..++++.++.|+|....++.+.+|+-|...+++-...+++..+...+|.++|.++|.+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~  296 (735)
T KOG3626|consen  217 NLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFC  296 (735)
T ss_pred             cccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHH
Confidence                               0226778889999999999999999999999999999999999999999999999996653


Q ss_pred             c----C----------------CchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccch
Q 041759          229 R----S----------------SSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLS  288 (525)
Q Consensus       229 ~----~----------------~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (525)
                      .    +                --|+.-|++.+.+.++.. +.++++|....   ...++.+.+ ..+..   +++.+  
T Consensus       297 l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a-~p~f~fPk~lp---~~~~~~~~~-~~~~~---k~~~~--  366 (735)
T KOG3626|consen  297 LKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA-VPLFFFPKELP---KSQKRKRAR-DLHVL---KTESG--  366 (735)
T ss_pred             HHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH-HHHHhCcccCc---cccccchhh-hhccc---ccccc--
Confidence            1    0                137777888888888888 55666665431   011110000 00000   00000  


Q ss_pred             hhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCChhHHHHHHHHHhcc
Q 041759          289 LSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGI-ENLGFDIYLGVVFNALLEI  367 (525)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  367 (525)
                             .+++.....++-+......+++++||.+...++...+-.........++|-++ +++|.+.+.+..+.+...+
T Consensus       367 -------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~v  439 (735)
T KOG3626|consen  367 -------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGV  439 (735)
T ss_pred             -------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhh
Confidence                   00000000001112235788899999877666666665555544444455555 5589999999999888777


Q ss_pred             cccccCchhHHHHHHHHHhhcC--hhHHHHHHHHHHHHH
Q 041759          368 PNLASTIPSFFLTFFLIQKWNR--KSSLLVLFIISGICS  404 (525)
Q Consensus       368 ~~~~~~~~~~~~~~~l~d~~g~--~~~~~~~~~~~~~~~  404 (525)
                      |.   ..+|.+++|++++|+..  |....+.++...+.+
T Consensus       440 p~---~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l  475 (735)
T KOG3626|consen  440 PA---AAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSL  475 (735)
T ss_pred             hh---hhhhhhccceeeeeecccHHHHHHHHHHHHHHHH
Confidence            43   34677899999999753  444444444433333

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.63  E-value=2.9e-15  Score=144.53  Aligned_cols=149  Identities=17%  Similarity=0.163  Sum_probs=123.2

Q ss_pred             ccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCc-hHHHHHHHHHHHHHHHHH-Hhh---h-hHHHHHHHHHHH
Q 041759          106 EWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGR-KNLLFLSCLTMSVATSLT-IFS---N-NLWIYSLLRFFS  179 (525)
Q Consensus       106 ~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Gr-k~~~~~~~~~~~i~~~~~-~~~---~-~~~~l~~~r~l~  179 (525)
                      |.+.   +....|++.++..+|.+++++..|+...| .|+ |+.++.|.++..+|+++. ++.   + ..+.++++|++.
T Consensus        65 D~~A---~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~  140 (488)
T KOG2325|consen   65 DPTA---TATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILT  140 (488)
T ss_pred             CCCC---CcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHc
Confidence            3555   78899999999999999999999999999 876 888999999999999988 332   3 678999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhcc---CC-----------chHHHHHHHHHHHH
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNR---SS-----------SWTIIYLWTSIPTL  245 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~---~~-----------~wr~~f~~~~~~~~  245 (525)
                      |+|.| .....-+|+++-...++|.|+++....+..+|.++||.++....   +-           -+..+-|+.+++.+
T Consensus       141 Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i  219 (488)
T KOG2325|consen  141 GVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWI  219 (488)
T ss_pred             CcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHH
Confidence            99988 56778899999888899999999999988999999888754332   11           12346678888888


Q ss_pred             HHHhHhheeecCCc
Q 041759          246 VYSGLLYIFVSESP  259 (525)
Q Consensus       246 ~~~~~~~~~lpesp  259 (525)
                      +..+++.++++|.+
T Consensus       220 ~~~v~i~~~f~E~~  233 (488)
T KOG2325|consen  220 IYIVIILFFFKEVY  233 (488)
T ss_pred             HHHHHHHhheeecc
Confidence            88877788888865

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.61  E-value=6.9e-15  Score=149.35  Aligned_cols=171  Identities=13%  Similarity=0.059  Sum_probs=128.9

Q ss_pred             eeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHH
Q 041759          103 IISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSL---TIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       103 i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~---~~~~~~~~~l~~~r~l~  179 (525)
                      +++++|.   +..+.++..+...++..++.++.|+++|| +|||+++.++.++..++.+.   ...+++...++++|++.
T Consensus       277 l~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (490)
T PRK10642        277 LSHNLHY---SEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLML  352 (490)
T ss_pred             HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            3456788   77778888888999999999999999999 99999988887654443332   22345677888899999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccC-CchHHHHHHHHHHHHHHHhHhheeecC
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRS-SSWTIIYLWTSIPTLVYSGLLYIFVSE  257 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~lpe  257 (525)
                      |++.+........++.|.+|++.|++.+++......++..++|.+ +++.+. .+|+.++++..+++++.. +..+++||
T Consensus       353 g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~-~~~~~~pe  431 (490)
T PRK10642        353 AVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL-ITGVTMKE  431 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HHHHHhcc
Confidence            988777777777788899999999999987433344445566655 665543 357877777777766666 55567799


Q ss_pred             CchHhhhc-----CCHHHHHHHHHhh
Q 041759          258 SPRWLFMQ-----GRQEEAVEVIKSL  278 (525)
Q Consensus       258 sp~~~~~~-----~~~~~~~~~~~~~  278 (525)
                      +|+|+.++     +|.+|+++.++++
T Consensus       432 s~~~~~~~~~~~~~~~~~a~~~l~~~  457 (490)
T PRK10642        432 TANRPLKGATPAASDIQEAKEILVEH  457 (490)
T ss_pred             ccCCCCCCccccccchhhHHHHhhcc
Confidence            99998755     8888888888877

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.59  E-value=4.7e-15  Score=123.48  Aligned_cols=137  Identities=23%  Similarity=0.288  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeec
Q 041759          120 PAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVG  199 (525)
Q Consensus       120 ~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~  199 (525)
                      +.+.+.++..+++++.|++.|| +|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|..|
T Consensus         3 ~~~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         3 LLAGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             EEEeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            4456778899999999999999 999999999999999999999899999999999999999999999999999999999


Q ss_pred             CcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecC
Q 041759          200 TEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSE  257 (525)
Q Consensus       200 ~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpe  257 (525)
                      +++|++..++.+....+|..+++.+ +.+.+..+|++.+++.++..++..+..+++.||
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999988 555566799999999888887777555555565

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.56  E-value=2.2e-13  Score=134.75  Aligned_cols=373  Identities=14%  Similarity=0.133  Sum_probs=223.7

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccC-----CchHHHHHHHHHHHHHHHHHHhh----hhHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSL-----GRKNLLFLSCLTMSVATSLTIFS----NNLW  170 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~-----Grk~~~~~~~~~~~i~~~~~~~~----~~~~  170 (525)
                      .+-+++++|+   ++.+.....++..+...+- ++.|.++|. +     -||+.++++.++..++.+..+..    .+..
T Consensus        13 ~~~l~~~l~l---s~~~~~~~~~~~~lPw~~K-p~~g~lsD~-~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~   87 (433)
T PF03092_consen   13 YPFLKDDLGL---SPAQLQRLSSLASLPWSIK-PLYGLLSDS-FPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA   87 (433)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHhCchHHh-hhHHhhccc-ccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence            6778999999   9999999999998887755 568999998 5     35666777887776666655553    3567


Q ss_pred             HHHHHHHHHhhcccchhhhhheeeEeeec--CcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHH
Q 041759          171 IYSLLRFFSGISRATIGTCTIVLLTEKVG--TEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVY  247 (525)
Q Consensus       171 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~  247 (525)
                      ...+.-++..+|.+.....+-+++.|...  ++.||...+.......+|.+++..+ |.+....++|..|.+.+++.++.
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~  167 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM  167 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence            77777888999999999999999999874  3447888888888999999999887 67777889999999988887777


Q ss_pred             HhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHH
Q 041759          248 SGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERT  327 (525)
Q Consensus       248 ~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (525)
                      .+...+..+|.+.    + +.++...    . . ++..+....               .-+......++.++.+..+...
T Consensus       168 ~~~~~~~~~e~~~----~-~~~~~~~----~-~-~~~~~~~~~---------------~~~~~~~~l~~~~~~~~i~~~~  221 (433)
T PF03092_consen  168 LIVALFLLEERKV----R-PADEVFS----F-G-KEEVPCLFG---------------SFREQLSELWRALQQRAIWQPI  221 (433)
T ss_pred             HHHHHHhhhhccc----c-ccchhhc----c-c-ccccchhhH---------------HHHHHHHHHHHHHhhhHHHHHH
Confidence            6455555554211    0 0000000    0 0 000000000               0000013566677777766655


Q ss_pred             H-HHHHHHHHHHHHHh-hhhhcccccC---ChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHH
Q 041759          328 L-ALMVPGFGIGVVYY-GMTLGIENLG---FDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGI  402 (525)
Q Consensus       328 ~-~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~  402 (525)
                      + ..++..+......- ...+.....+   +++...+....+..+    +.++|..+......+..-|+++..+.++..+
T Consensus       222 ~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~----~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~  297 (433)
T PF03092_consen  222 LFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSI----ASLLGILLYRKYFSNWSWRRIFVVTTLVSVL  297 (433)
T ss_pred             HHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            5 22222221111000 0011112233   565555544433333    4446666666655566667776666655554


Q ss_pred             HHHHHHHh-cccc-----ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          403 CSIMAVVA-NDIS-----NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       403 ~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      ..+.-... ...+     .+.+ ..+.-.++........+-....+++|+.|+...|+.+++...+.++|..++..+...
T Consensus       298 ~~l~~~~lv~~~n~~~Gi~d~~-f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~  376 (433)
T PF03092_consen  298 ASLFDLLLVTRWNLDLGIPDQW-FALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAF  376 (433)
T ss_pred             HhcccEEEEEEEeeeeCcCCeE-EEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43322111 1000     0112 223334444455555555666788999999999999999999999988877766642


Q ss_pred             -----c--c---CchhHHHHHHHHHHHHHHHHHHhccCCCCC
Q 041759          477 -----G--S---NNEFVSYGVFGLVIICCGFFVICLPETRGS  508 (525)
Q Consensus       477 -----~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (525)
                           .  .   .+.....++..++.++...+..++|+.++.
T Consensus       377 l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~~  418 (433)
T PF03092_consen  377 LMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKRI  418 (433)
T ss_pred             HHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCchh
Confidence                 1  1   122333444455555555556667775543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.56  E-value=2.4e-12  Score=126.42  Aligned_cols=312  Identities=17%  Similarity=0.150  Sum_probs=206.3

Q ss_pred             HHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccc--chhhhhheeeEeeecC
Q 041759          123 SHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRA--TIGTCTIVLLTEKVGT  200 (525)
Q Consensus       123 ~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~--~~~~~~~~~i~~~~~~  200 (525)
                      ...+...+.++..|.++|| +|||..+.+..+...+..+...+..  |++++   +.|+..+  .......++++|....
T Consensus        70 ~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~  143 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDR-YGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSE  143 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccch
Confidence            4466778888999999999 9999999999999988888887766  33433   4444333  3556677889999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhC
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLS  279 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~  279 (525)
                      ++|....++.......+..++|.+ ++.....|.-..|.+..+..++..+...+++||+-..   +++.+   ...++..
T Consensus       144 ~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~---~~~~~~~  217 (463)
T KOG2816|consen  144 EERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE---KERSD---ATLRELT  217 (463)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc---ccccc---ccccccC
Confidence            999999999999999999999998 5555667888899999999999888888999997421   11100   0000000


Q ss_pred             CCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh-hhhhcc-cccCChhHH
Q 041759          280 PIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYY-GMTLGI-ENLGFDIYL  357 (525)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~  357 (525)
                      .+........          +         ........-.+|..+......++.......... ..++++ ..++++...
T Consensus       218 ~~~~~~~~~~----------~---------~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~  278 (463)
T KOG2816|consen  218 PGSLDSSHVA----------D---------AFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKE  278 (463)
T ss_pred             CCcccchhhh----------h---------hhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHH
Confidence            0000000000          0         000111111112111112222221111111111 123333 347888887


Q ss_pred             HHHHHHHhcccccccCchhHHHHH-HHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHH
Q 041759          358 GVVFNALLEIPNLASTIPSFFLTF-FLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAY  436 (525)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (525)
                      .+.+.+...+    ...++.++.. .+...++.|+....|...-.+..+.+.+....    | ..+ .............
T Consensus       279 ~s~~~~~~~~----~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~----w-~~~-~~~v~~~~~~~~~  348 (463)
T KOG2816|consen  279 FSDLLSLVSI----LGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATET----W-MMF-AAGVVVALAGIVF  348 (463)
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccc----h-hhh-HHHHHHHhhcchh
Confidence            7766666665    3335555555 67777888888889999889998888887766    3 333 3333445556777


Q ss_pred             HHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 041759          437 TVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       437 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~  475 (525)
                      +...++.+...+++.+|+++++...+..+.++++|.+.+
T Consensus       349 pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~  387 (463)
T KOG2816|consen  349 PAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYG  387 (463)
T ss_pred             HHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHH
Confidence            888899999999999999999999999999999998887

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.47  E-value=3e-13  Score=134.93  Aligned_cols=145  Identities=15%  Similarity=0.139  Sum_probs=125.4

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhhe
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIV  192 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  192 (525)
                      +..+.|++.++..++..++.+++|++.|| +|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....
T Consensus       260 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  338 (420)
T PRK09528        260 GTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFK  338 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66788999999999999999999999999 99999999999999999999999999999999999999999888888888


Q ss_pred             eeEeeecCcchhhHHhH-HHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          193 LLTEKVGTEWRGLVGIL-DSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       193 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      ++.|.+|++.|+...+. ++....+|.++++.+ +.+.+..|||..|.+.+++.++..++.++.+++.
T Consensus       339 ~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        339 YITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999988887655 677788999999888 6777778999999998888877664555555543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.47  E-value=2.1e-13  Score=135.30  Aligned_cols=145  Identities=13%  Similarity=0.125  Sum_probs=124.6

Q ss_pred             hhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhhcccchhhh
Q 041759          114 AFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN----NLWIYSLLRFFSGISRATIGTC  189 (525)
Q Consensus       114 ~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~  189 (525)
                      ....+...++..++..++.++.|+++|| +|||+++.++.++.+++..+.....    +++.+++.+++.|++.+...+.
T Consensus       250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~  328 (418)
T TIGR00889       250 VKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS  328 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4677999999999999999999999999 9999999999999988877766632    3466788899999999988888


Q ss_pred             hheeeEeeecCcchhhHHhHHH-HHHHHHHHHHHHHH-HhccC------CchHHHHHHHHHHHHHHHhHhheeecCCc
Q 041759          190 TIVLLTEKVGTEWRGLVGILDS-FFFTIGTLTLPAIA-YTNRS------SSWTIIYLWTSIPTLVYSGLLYIFVSESP  259 (525)
Q Consensus       190 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~l~~~l~-~~~~~------~~wr~~f~~~~~~~~~~~~~~~~~lpesp  259 (525)
                      ...++.|++|+++|+++.++.+ ...++|.++||.++ .+.+.      +||+.+|.+.+++.++..++.++++||+.
T Consensus       329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            8999999999999999999997 67889999999984 44443      57999999999988888877788888763

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.45  E-value=2e-11  Score=116.10  Aligned_cols=346  Identities=11%  Similarity=0.050  Sum_probs=210.9

Q ss_pred             cceeec-cccccchhhhhh-hHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 041759          101 LTIISE-WGLECSSAFIKG-LPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFF  178 (525)
Q Consensus       101 ~~i~~~-~~~~~~s~~~~g-~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  178 (525)
                      |.+.+. .|+   +..|+. -+.-+..-.++...++...+.|. .|.|++++++.+...+..++..+.++.+.+-+..+.
T Consensus        28 ~yL~~~~kn~---T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~  103 (412)
T PF01770_consen   28 PYLTGPDKNF---TEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFF  103 (412)
T ss_pred             HHHcCCccCC---CHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence            344443 677   666554 56666777788888999999999 999999999999999999999999999999999999


Q ss_pred             HhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHHHHhHhheee
Q 041759          179 SGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNR---SSSWTIIYLWTSIPTLVYSGLLYIFV  255 (525)
Q Consensus       179 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~---~~~wr~~f~~~~~~~~~~~~~~~~~l  255 (525)
                      .|++.+. ..+..+|+-...|+++-.++.+...++.-+|..++.++|-++.   ..+.+.++.+......+.+ +..+++
T Consensus       104 yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~-~~~~fL  181 (412)
T PF01770_consen  104 YGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLAL-LIALFL  181 (412)
T ss_pred             HHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHHHc
Confidence            9999984 7778899988899988899999999999999888888876543   4466777666665555555 566778


Q ss_pred             cCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhc-cCCCCcc-ccccc----ccchhhhhhhhcchhHHHHHHH
Q 041759          256 SESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAV-SFGHEPA-ASSKE----SSFLSSIRELFVRRWALERTLA  329 (525)
Q Consensus       256 pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~----~~~~~~~~~l~~~~~~~~~~~~  329 (525)
                      |..++-..-+++.++... ..     +.+.+..++..+.. +..++++ ...+.    ......+++..++|.+++..+.
T Consensus       182 P~~~~S~~f~r~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlW  255 (412)
T PF01770_consen  182 PMPKRSLFFHRKPPAEQD-AN-----ESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLW  255 (412)
T ss_pred             CCCCcccceeccCccccc-cc-----cccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence            876542222222111000 00     00000000000000 0000000 00000    1112345666778876665555


Q ss_pred             HHHHHHHHHHHHhhhhhccccc---CChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHH--HHHH
Q 041759          330 LMVPGFGIGVVYYGMTLGIENL---GFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIIS--GICS  404 (525)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~--~~~~  404 (525)
                      -.+...+...+.++...+.++.   +.....++..-+...+    .+.++.+..|++..++.+..-+.++....  +..+
T Consensus       256 Wa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tl----lgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L  331 (412)
T PF01770_consen  256 WAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTL----LGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLL  331 (412)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHH----HHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            5555555544443333333332   2223334444444444    34467777888766666554444433333  3333


Q ss_pred             HHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHH
Q 041759          405 IMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAA  467 (525)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~  467 (525)
                      +++....+     .+..++..++.........++...-++.....+.-|..+|+++++..+-+
T Consensus       332 ~lm~~t~~-----Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ  389 (412)
T PF01770_consen  332 FLMSFTGN-----IWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQ  389 (412)
T ss_pred             HHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence            33333322     34677777777777777777777777766667777888888776654433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.43  E-value=4.5e-13  Score=139.23  Aligned_cols=141  Identities=16%  Similarity=-0.001  Sum_probs=121.8

Q ss_pred             hhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEe
Q 041759          117 KGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTE  196 (525)
Q Consensus       117 ~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  196 (525)
                      ..+...+..++.+++.++.|+++|| +|||++++++.++.+++.++.+++++...+++.+++.|++.++..+...++++|
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE  675 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVE  675 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677889999999999999999 999999999999999999999999988889999999999888889999999999


Q ss_pred             eecCcchhhHHhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhHhheeecCCc
Q 041759          197 KVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESP  259 (525)
Q Consensus       197 ~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp  259 (525)
                      ++|.+.|++++++..+...+|.+++|+++..+...+...+|++.++..++.. ++..++||+.
T Consensus       676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~-ll~~~LPET~  737 (742)
T TIGR01299       676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGG-LLALKLPDTR  737 (742)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHhCCCCc
Confidence            9999999999999999999999999998543333356678888877777766 5555679874

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.42  E-value=1.8e-12  Score=128.00  Aligned_cols=150  Identities=11%  Similarity=0.140  Sum_probs=122.7

Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 041759          102 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGI  181 (525)
Q Consensus       102 ~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~  181 (525)
                      .+++++|+   +..+.+++.+...++..++.++.|+++|| +|||+.+..+.+...+......+.++.+.+++.+++.++
T Consensus       242 ~l~~~~~~---~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  317 (393)
T PRK15011        242 FIINELHL---PEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAI  317 (393)
T ss_pred             HHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34567888   88899998888888888899999999999 999998888777666665555667788888889999988


Q ss_pred             cccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecC
Q 041759          182 SRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSE  257 (525)
Q Consensus       182 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpe  257 (525)
                      +.+...+....+..|..|+ +|+++.++++....+|..+++.+ +.+.+..+|+..|++.+++.++.. +..+++||
T Consensus       318 ~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~  392 (393)
T PRK15011        318 YIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATL-FCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHhhcC
Confidence            8887777777778888875 59999999999999999999998 555566799999998888887776 55555554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.41  E-value=1.5e-12  Score=127.88  Aligned_cols=145  Identities=13%  Similarity=-0.008  Sum_probs=124.1

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNL--WIYSLLRF  177 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~r~  177 (525)
                      .+.+.++++.   +..+.+++.+.+.++..++.++.|+++|| +|||+.+.++.++.+++.++..+.++.  ..+++..+
T Consensus       228 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T TIGR00890       228 YKPYGQSLGL---SDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA  303 (377)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            3445577888   88889999999999999999999999999 999999999999999888887776643  34556678


Q ss_pred             HHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHH
Q 041759          178 FSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       178 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~  248 (525)
                      +.|++.+...+..+.++.|.+|+++|+++.++.+....+|..++|.+ +.+.+..||++.|.+.+++.++..
T Consensus       304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            88998888888888889999999999999999999999999999988 666677899999999887777654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.38  E-value=5e-12  Score=122.86  Aligned_cols=145  Identities=22%  Similarity=0.239  Sum_probs=133.8

Q ss_pred             ccceeecc-ccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 041759          100 ALTIISEW-GLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKN-LLFLSCLTMSVATSLTIFSNNLWIYSLLRF  177 (525)
Q Consensus       100 ~~~i~~~~-~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~  177 (525)
                      .|.+.++. |.   ++.+.++..+...++..++.++.|++.|| +|||+ .+..+.++..++.++..+.++.+.+.+..+
T Consensus       198 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  273 (352)
T cd06174         198 LPLYLQEVLGL---SAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALL  273 (352)
T ss_pred             HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            45555554 88   89999999999999999999999999999 99999 999999999999999999999999999999


Q ss_pred             HHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHH
Q 041759          178 FSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       178 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~  248 (525)
                      +.|++.+...+...+++.|..|+++|++.+++.+....+|..+++.+ +.+.+..+|++.+.+.+++.++..
T Consensus       274 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~  345 (352)
T cd06174         274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAA  345 (352)
T ss_pred             HHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988 566667899999999999988877

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.36  E-value=1.2e-11  Score=122.65  Aligned_cols=135  Identities=14%  Similarity=0.132  Sum_probs=117.8

Q ss_pred             hhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEe
Q 041759          117 KGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTE  196 (525)
Q Consensus       117 ~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  196 (525)
                      .++..+.+.++..++.++.|++.|| +|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~  329 (399)
T PRK05122        251 AALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK  329 (399)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4566778889999999999999999 999999999999889888888888898888999999999999888887777888


Q ss_pred             eecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhh
Q 041759          197 KVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLY  252 (525)
Q Consensus       197 ~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~  252 (525)
                      ..|+++|+++.++++....+|..+++.+ +.+.+..||++.|++.++..++..++.+
T Consensus       330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (399)
T PRK05122        330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTW  386 (399)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887766 6676778999999998888877763433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.35  E-value=1.6e-11  Score=120.73  Aligned_cols=149  Identities=15%  Similarity=0.238  Sum_probs=124.0

Q ss_pred             eeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 041759          103 IISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGIS  182 (525)
Q Consensus       103 i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~  182 (525)
                      +.+++|.   ++.+.+++.+...+...++.++.|++.|| +|||+++.++.++..+..+...+.++.+.+++.+++.|++
T Consensus       226 ~~~~~g~---~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  301 (375)
T TIGR00899       226 IIHELGL---PDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIF  301 (375)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888   88899998888877888889999999999 9999999888877776666666778888888899999999


Q ss_pred             ccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecC
Q 041759          183 RATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSE  257 (525)
Q Consensus       183 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpe  257 (525)
                      .+...+....++.|..|+ +++++.++.+....+|..++|.+ +.+.+..||+..|++.++..++.. +...+++|
T Consensus       302 ~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~  375 (375)
T TIGR00899       302 IGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVAL-FCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-HHHheecC
Confidence            998888888888898875 56799999999999999999988 556677799999999998887777 44455543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=99.35  E-value=9.4e-12  Score=123.04  Aligned_cols=136  Identities=15%  Similarity=0.125  Sum_probs=119.4

Q ss_pred             hhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEe
Q 041759          117 KGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTE  196 (525)
Q Consensus       117 ~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  196 (525)
                      .++..+.+.++..+++++.|++.|| +|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+...+.+.|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  329 (392)
T PRK12382        251 AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVK  329 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4566677888889999999999999 999999999999999998888888888888899999999999888888888889


Q ss_pred             eecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhhe
Q 041759          197 KVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYI  253 (525)
Q Consensus       197 ~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~  253 (525)
                      .+|+++|+++.++++....+|..++|.+ +.+.+..||++.|.+.++..++..++.++
T Consensus       330 ~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        330 RVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988 66677789999999998888777644443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.32  E-value=3e-11  Score=120.49  Aligned_cols=189  Identities=14%  Similarity=0.080  Sum_probs=138.1

Q ss_pred             hhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhH
Q 041759          313 SIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSS  392 (525)
Q Consensus       313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~  392 (525)
                      +++.+.+++.++..++..++..+........+|.+.++.+.+..+.+...+...+    +.+++.++.|++.||+|||+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l----~~~~~~~~~G~l~dr~g~~~~   84 (417)
T PRK10489          9 DLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGG----AMFIGLMVGGVLADRYDRKKL   84 (417)
T ss_pred             HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHhhHHHhhhcCCceE
Confidence            4555667787777666666777777777777888888888888888888887777    777899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHH
Q 041759          393 LLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSV  472 (525)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~  472 (525)
                      +..+..+.+++.+.+.........+.....+..++.+++.+...+....+..|..|+++|+++.++.+....+|..++|.
T Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  164 (417)
T PRK10489         85 ILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPA  164 (417)
T ss_pred             EEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHH
Confidence            98887777766655432110000123355556666677777777888889999999999999999999999999999999


Q ss_pred             HHhh--ccCchhHHHHHHHHHHHHHHHHHHhccCC
Q 041759          473 LVAA--GSNNEFVSYGVFGLVIICCGFFVICLPET  505 (525)
Q Consensus       473 i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (525)
                      +.+.  ...++.+.+.+.++..++..++.+.+|+.
T Consensus       165 l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (417)
T PRK10489        165 LGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPAL  199 (417)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9884  22345566666666555555555566654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.30  E-value=1.3e-11  Score=124.13  Aligned_cols=145  Identities=10%  Similarity=0.061  Sum_probs=119.6

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccC--CchHHHHH--HHHHHHHHHHHHHhhhhHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSL--GRKNLLFL--SCLTMSVATSLTIFSNNLWIYSLL  175 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~--Grk~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~  175 (525)
                      +|.+.+++|.   +..+.+++.++..++..+++++.|+++|| .  ++|+...+  +.++.+++.++..+.++++.+++.
T Consensus       264 l~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~  339 (455)
T TIGR00892       264 LVPYAKDKGV---DEYEAAFLLSIIGFVDIFARPSCGLIAGL-KWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIY  339 (455)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            4556677888   99999999999999999999999999997 4  33433333  344445556666778899999999


Q ss_pred             HHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCC-chHHHHHHHHHHHHHHH
Q 041759          176 RFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSS-SWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       176 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~-~wr~~f~~~~~~~~~~~  248 (525)
                      +++.|++.+...+...+++.|.+|++++++..++++....+|.++||.+ +.+.+.. +|++.|++.+++.++..
T Consensus       340 ~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~  414 (455)
T TIGR00892       340 CIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG  414 (455)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998 4455555 59999999888776655

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.29  E-value=6.2e-11  Score=115.89  Aligned_cols=170  Identities=8%  Similarity=-0.047  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHH
Q 041759          328 LALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMA  407 (525)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~  407 (525)
                      ...++..+........+|.+..+.+.+..+.+...+...+    +.+++.++.|++.||+|||+.+..+..+..++.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~----~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGML----PYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----HHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            3444455555666667777888888888888888887777    777899999999999999999999988887777766


Q ss_pred             HHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHH
Q 041759          408 VVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSY  485 (525)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~  485 (525)
                      .........+....++..++.+++.+...+...++..|.+|+++|++..++.+....+|.+++|.+.+.  ...++...+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~  161 (365)
T TIGR00900        82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAI  161 (365)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            665421111244666777788888888889999999999999999999999999999999999999874  233456666


Q ss_pred             HHHHHHHHHHHHHHHh
Q 041759          486 GVFGLVIICCGFFVIC  501 (525)
Q Consensus       486 ~~~~~~~~~~~~~~~~  501 (525)
                      .+.++..++..++.+.
T Consensus       162 ~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       162 WVDAVGFAISALLIVS  177 (365)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            6666555555444433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.29  E-value=8.3e-11  Score=116.14  Aligned_cols=149  Identities=19%  Similarity=0.109  Sum_probs=119.5

Q ss_pred             cceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHH
Q 041759          101 LTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVAT-SLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       101 ~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~-~~~~~~~~~~~l~~~r~l~  179 (525)
                      |.+++++|.   +..+.+++.+.+.++..+++++.|+++|| +|||++. .+..+..++. ++..+.++.+.+++..++.
T Consensus       230 ~~l~~~~g~---s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~  304 (390)
T PRK03545        230 PFVQQVAGL---SENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFW  304 (390)
T ss_pred             HHHHHhcCC---CccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            344556788   88899999999999999999999999999 9988754 4444444443 3345567888888899999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheee
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFV  255 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~l  255 (525)
                      |++.+...+...+.+.+..| ++|++++++++....+|..+||++ +.+.+..|++..|++.+++.++..+..+...
T Consensus       305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            99988777777777778766 688999999999999999999998 6677889999999999988887774554443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.29  E-value=5.9e-11  Score=116.73  Aligned_cols=143  Identities=11%  Similarity=0.032  Sum_probs=125.7

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      .|...+|+|.   +..+.|++.+...++..++.++.|++.|| +|+|+.+.++.++.++..++.+++++.+.+++.++++
T Consensus       228 ~~~~l~~~g~---s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~  303 (382)
T TIGR00902       228 SAIYWQAAGI---SASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILH  303 (382)
T ss_pred             HHHHHHHCCC---CHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Confidence            3444467899   99999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHH-HHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHH
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDS-FFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~  248 (525)
                      |++.+...+....++.+. |+++|++..++++ ...++|.++++.+ |.+.+..|+ ..|++.++++++..
T Consensus       304 g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       304 CGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            999999999999999988 8899999999876 5778999999999 555566676 66777777776654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10054 putative transporter; Provisional

Probab=99.29  E-value=1.6e-10  Score=114.08  Aligned_cols=173  Identities=10%  Similarity=0.006  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcc-cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHH
Q 041759          324 LERTLALMVPGFGIGVVYYGMTLGI-ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGI  402 (525)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~  402 (525)
                      +...+..++...+.......++.++ +++|.+..+.+...+...+    +.+++.++.|+++||+|||+.+.++.++..+
T Consensus        10 ~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~----~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~   85 (395)
T PRK10054         10 SALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALT----IGVVFSLGFGILADKFDKKRYMLLAITAFAS   85 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence            4444445555555555555555544 5689999998888887777    6778899999999999999999998888888


Q ss_pred             HHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh-ccCch
Q 041759          403 CSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA-GSNNE  481 (525)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~-~~~~~  481 (525)
                      +.+++.+.++.    + ..++...+.+.+.+...+....+..|..|++.|+++.++.+....+|..++|.+.+. ...++
T Consensus        86 ~~~~~~~~~~~----~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~  160 (395)
T PRK10054         86 GFIAIPLVNNV----T-LVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSI  160 (395)
T ss_pred             HHHHHHHHhHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            77776665443    2 333344445555556667788899999999999999999999999999999999885 23356


Q ss_pred             hHHHHHHHHHHHHHHHHH-HhccCC
Q 041759          482 FVSYGVFGLVIICCGFFV-ICLPET  505 (525)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~-~~~~~~  505 (525)
                      ...|.+.+++.++..++. +++++.
T Consensus       161 ~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        161 NLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            667777766666654433 334443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.28  E-value=2.9e-11  Score=120.26  Aligned_cols=137  Identities=20%  Similarity=0.234  Sum_probs=120.4

Q ss_pred             hhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeE
Q 041759          116 IKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLT  195 (525)
Q Consensus       116 ~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~  195 (525)
                      ..+.+.+++.++..++.++.|+++|| +|||+.+..+..+.+++.+...+.++.+.+++.+++.|++.+...+...+++.
T Consensus       259 ~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  337 (408)
T PRK09874        259 ISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLV  337 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence            45677778888999999999999999 99999999999888888888888888899999999999999999998888888


Q ss_pred             eeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhhe
Q 041759          196 EKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYI  253 (525)
Q Consensus       196 ~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~  253 (525)
                      +..|+++|++.+++.+....+|..+||.+ +.+.+..||++.|++.+++.++..+..++
T Consensus       338 ~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        338 YNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999 55667789999999999888887744443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.27  E-value=4.1e-11  Score=119.14  Aligned_cols=145  Identities=17%  Similarity=0.066  Sum_probs=122.2

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      .|.+.++.|.   +..+.+++.+.+.++..++.++.|+++|| +|||+.+..+.+..+++.++..+.++.+.+.+..++.
T Consensus       243 ~p~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (406)
T PRK11551        243 LPSLLVGQGL---SRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA  318 (406)
T ss_pred             HHHHHHhCCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4556667788   88999999999999999999999999999 9999999888777777777777778888888888899


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccC-CchHHHHHHHHHHHHHHH
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRS-SSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~-~~wr~~f~~~~~~~~~~~  248 (525)
                      |++.+...+...+++.|.+|+++|++..++.+....+|..++|.+ +.+.+. .+|...++......++..
T Consensus       319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  389 (406)
T PRK11551        319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAA  389 (406)
T ss_pred             HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHH
Confidence            998888888888999999999999999999999999999999998 454443 356666766666655555

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.26  E-value=3e-10  Score=105.14  Aligned_cols=151  Identities=19%  Similarity=0.167  Sum_probs=110.5

Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 041759          102 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGI  181 (525)
Q Consensus       102 ~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~  181 (525)
                      .+.+++|.   ++.+++.+....+...++...+.|.++|| +|||+.-++.+++.+++++. -..++++.++++|++.|+
T Consensus        59 ~LY~~yg~---~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGi  133 (354)
T PF05631_consen   59 ALYESYGF---SEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGI  133 (354)
T ss_pred             HHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHH
Confidence            34468999   99999999999999999999999999999 99999999999999999964 455899999999999999


Q ss_pred             cccchhhhhheee-Eee----ecCcchhhHHhHHH-HHHHHHHHHHHHHHHh-ccC--CchHHHHHHHHHHHHHHHhHhh
Q 041759          182 SRATIGTCTIVLL-TEK----VGTEWRGLVGILDS-FFFTIGTLTLPAIAYT-NRS--SSWTIIYLWTSIPTLVYSGLLY  252 (525)
Q Consensus       182 ~~~~~~~~~~~~i-~~~----~~~~~r~~~~~~~~-~~~~~G~~l~~~l~~~-~~~--~~wr~~f~~~~~~~~~~~~~~~  252 (525)
                      +......+..++. .|.    +|++..+..++... ...++-.+++.+++-. .+.  .|-..+|....++.++..+++.
T Consensus       134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLIL  213 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHH
Confidence            9999999888764 343    23333344444333 2233333444444433 332  3457888888877777764444


Q ss_pred             eeecC
Q 041759          253 IFVSE  257 (525)
Q Consensus       253 ~~lpe  257 (525)
                      ..-+|
T Consensus       214 ~~W~E  218 (354)
T PF05631_consen  214 KTWPE  218 (354)
T ss_pred             hcccc
Confidence            43444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.26  E-value=1.7e-10  Score=112.26  Aligned_cols=159  Identities=11%  Similarity=0.139  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHhhhh-hcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHH
Q 041759          331 MVPGFGIGVVYYGMT-LGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVV  409 (525)
Q Consensus       331 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~  409 (525)
                      ++..+.........+ .+.+++|.+..+.+...+...+    +..++.++.|++.||+|||+.+.++.++.+++.++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~----~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    6 FLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFL----GSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHH----HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            333444444555556 6678889888888888887777    77799999999999999999999999999988555544


Q ss_pred             hccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhcc--CchhHHHHH
Q 041759          410 ANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGS--NNEFVSYGV  487 (525)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~~--~~~~~~~~~  487 (525)
                      ..+.    + ..++..++.+++.+...+....++.|.+|+++|+++.++......+|..++|.+.+...  .++...+.+
T Consensus        82 ~~~~----~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~  156 (352)
T PF07690_consen   82 ASNF----W-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLI  156 (352)
T ss_dssp             HCCH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHH
T ss_pred             hhhH----H-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccc
Confidence            3332    4 77888889999999999999999999999999999999999999999999999998533  346667888


Q ss_pred             HHHHHHHHHHH
Q 041759          488 FGLVIICCGFF  498 (525)
Q Consensus       488 ~~~~~~~~~~~  498 (525)
                      .+++.++..++
T Consensus       157 ~~~~~~~~~il  167 (352)
T PF07690_consen  157 SAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHH
T ss_pred             ccchhhhhhhh
Confidence            87777776653

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.24  E-value=1.4e-10  Score=114.21  Aligned_cols=142  Identities=18%  Similarity=0.183  Sum_probs=116.9

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      +|.+.++.|.   +..+.|+..+...++..+++++.|++.|| +|||+++..+.++.+++.+...  . .......+++.
T Consensus       223 lp~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~  295 (381)
T PRK03633        223 MPLYLNHQGM---SDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFIL  295 (381)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHH
Confidence            3445556688   88899999999999999999999999999 9999999988888877665443  2 23444567788


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHH
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~  248 (525)
                      |++.....|...+++.|..|+++++...+.+....++|.++||.+ +.+.+..+|++.|.+.+...++..
T Consensus       296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~  365 (381)
T PRK03633        296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL  365 (381)
T ss_pred             HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            888777889998989999988888888888888999999999988 666677899999999888887665

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.24  E-value=4.9e-11  Score=121.28  Aligned_cols=156  Identities=13%  Similarity=0.063  Sum_probs=122.0

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh-----h------h
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS-----N------N  168 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~-----~------~  168 (525)
                      .|.+.+++|.   +..+.++......++..++.++.|+++|| +|||+.+.++.++.+++.++.++.     +      +
T Consensus       307 ~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (481)
T TIGR00879       307 SPTIFENAGV---STDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG  382 (481)
T ss_pred             HHHHHHHcCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence            5667778888   77888999999999999999999999999 999999999988888877776621     1      2


Q ss_pred             HHHHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHH
Q 041759          169 LWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVY  247 (525)
Q Consensus       169 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~  247 (525)
                      ...+....++.+.......+....++.|.+|+++|+++.++.+....+|.+++|.+ +.+.+..+|++.|++.++++++.
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~  462 (481)
T TIGR00879       383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLG  462 (481)
T ss_pred             HHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHH
Confidence            33333333333332233446666778999999999999999999999999999987 66666779999999999888887


Q ss_pred             HhHhheeecCCc
Q 041759          248 SGLLYIFVSESP  259 (525)
Q Consensus       248 ~~~~~~~lpesp  259 (525)
                      .++..++.||++
T Consensus       463 ~i~~~~~~~~~~  474 (481)
T TIGR00879       463 LIFVYFFLPETK  474 (481)
T ss_pred             HHHHheecccCC
Confidence            766667778754

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.23  E-value=1.1e-10  Score=118.66  Aligned_cols=156  Identities=19%  Similarity=0.078  Sum_probs=118.4

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh--hH--HHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN--NL--WIYSLL  175 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~--~~--~~l~~~  175 (525)
                      .|.+.+++|.   +....++......++..++.++.|+++|| +|||++++.+.++.+++.++.+...  +.  .....+
T Consensus       294 ~p~i~~~~g~---~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~  369 (479)
T PRK10077        294 APEIFKTLGA---STDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS  369 (479)
T ss_pred             HHHHHHHcCC---CCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence            5777778888   76667777777888899999999999999 9999999999999988887765432  21  122333


Q ss_pred             HHHHhhcccc-hhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH-------HhccCCchHHHHHHHHHHHHHH
Q 041759          176 RFFSGISRAT-IGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA-------YTNRSSSWTIIYLWTSIPTLVY  247 (525)
Q Consensus       176 r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-------~~~~~~~wr~~f~~~~~~~~~~  247 (525)
                      .++.+++.+. ..+....++.|.+|+++|++++++......+|.++++.+.       +..+..+|++.|++.++..++.
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (479)
T PRK10077        370 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA  449 (479)
T ss_pred             HHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHH
Confidence            4444444433 2366788899999999999999999999999998876552       2234678999999988887777


Q ss_pred             HhHhheeecCCc
Q 041759          248 SGLLYIFVSESP  259 (525)
Q Consensus       248 ~~~~~~~lpesp  259 (525)
                      .++.+++.||+.
T Consensus       450 ~~~~~~~~~e~~  461 (479)
T PRK10077        450 ALFMWKFVPETK  461 (479)
T ss_pred             HHHHHhccccCC
Confidence            756667788864

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.23  E-value=3.8e-10  Score=112.07  Aligned_cols=159  Identities=12%  Similarity=0.080  Sum_probs=127.1

Q ss_pred             HHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchh
Q 041759          340 VYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKR  419 (525)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (525)
                      ..+..+.+.++++.+..+.+...+...+    +..++.+..|++.||+|||+++..+.++..++.++..+.++.     .
T Consensus        27 ~~~~~~~l~~~~~~s~~~~g~~~s~~~~----~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~-----~   97 (412)
T TIGR02332        27 IGFAGLTMGKDLGLSATMFGLAATLFYA----AYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGP-----E   97 (412)
T ss_pred             HHHHHHhhHhhcCCCHHHHHHHHHHHHH----HHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCH-----H
Confidence            3445566778899999998888888877    777899999999999999999999999999888888775444     4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc--------cCchhHHHHHHHHH
Q 041759          420 MRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG--------SNNEFVSYGVFGLV  491 (525)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~--------~~~~~~~~~~~~~~  491 (525)
                      ..++.-++.+++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+..        ..++...|.+.++.
T Consensus        98 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~  177 (412)
T TIGR02332        98 SLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFP  177 (412)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHH
Confidence            5667778888998888888888999999999999999999999999999999887742        13677788777666


Q ss_pred             HHHHHH-HHHhccCCCC
Q 041759          492 IICCGF-FVICLPETRG  507 (525)
Q Consensus       492 ~~~~~~-~~~~~~~~~~  507 (525)
                      .++..+ ..+++||+++
T Consensus       178 ~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       178 SVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHhhccCCCcc
Confidence            555443 4455676553

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.23  E-value=4.5e-10  Score=107.87  Aligned_cols=177  Identities=17%  Similarity=0.195  Sum_probs=135.7

Q ss_pred             hhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHH
Q 041759          315 RELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLL  394 (525)
Q Consensus       315 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~  394 (525)
                      .+++.++.....++..++..++...+++.+-..+++++......+    ...+.+.++-++..++.+++++|+|+-+++.
T Consensus       365 ~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfG----v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~  440 (618)
T KOG3762|consen  365 GKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFG----VVSALCHAGEILFYFFSFKLIEKIGHVNVMY  440 (618)
T ss_pred             HHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeee----ehhhhhccchHHHHHHHHHHHHHhcccceee
Confidence            356777776666666666677777777777777788775544443    3333334477899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHH-HHHHHHHHHH
Q 041759          395 VLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAI-IFAAIFSSVL  473 (525)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~-~~g~~~~p~i  473 (525)
                      +++.+..+-++.+....+.     |..+..-++.+...+..|....+|+....|++.++++.++..... .+|-.+|.++
T Consensus       441 lgLa~~~~Rf~~~S~L~n~-----W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslI  515 (618)
T KOG3762|consen  441 LGLACNVGRFLYYSYLQNP-----WMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLI  515 (618)
T ss_pred             ehhhHHHHHHHHHHHhcCc-----hheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhh
Confidence            9999999888888777655     477788899999999999999999999999999999999998776 6666677777


Q ss_pred             Hhh--ccCchhHHHHHHHHHHHHHHHHHH
Q 041759          474 VAA--GSNNEFVSYGVFGLVIICCGFFVI  500 (525)
Q Consensus       474 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~  500 (525)
                      .|.  ...+....|.++++.+++..++..
T Consensus       516 GG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  516 GGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             hhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            763  334667778887777766555443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.23  E-value=5.7e-10  Score=110.30  Aligned_cols=167  Identities=13%  Similarity=0.048  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhc
Q 041759          332 VPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVAN  411 (525)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~  411 (525)
                      ....+.......+|.+.+++|.+....+...+...+    +.+++.++.|+++||+|||+.+..+..+..++.++....+
T Consensus        14 ~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~----~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~   89 (392)
T PRK10473         14 LYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLA----GMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE   89 (392)
T ss_pred             HHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHH----HHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC
Confidence            333344444456677788889988888877777776    7778899999999999999999999988888887776654


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHH
Q 041759          412 DISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFG  489 (525)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~  489 (525)
                      +.     ...++..++.+++.+..++....++.|.+|+++|+++.++.+....++..++|.+.+.  ...++...+.+.+
T Consensus        90 ~~-----~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~  164 (392)
T PRK10473         90 TS-----SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMA  164 (392)
T ss_pred             cH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHH
Confidence            33     3455566677777777788889999999999999999999999999999999988874  2345666677776


Q ss_pred             HHHHHHHHH-HHhccCCCC
Q 041759          490 LVIICCGFF-VICLPETRG  507 (525)
Q Consensus       490 ~~~~~~~~~-~~~~~~~~~  507 (525)
                      ++.++..++ .+.++|+++
T Consensus       165 ~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        165 AMGILVLLLSLFILKETRP  183 (392)
T ss_pred             HHHHHHHHHHHHHcCCCCC
Confidence            665555443 345566543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.22  E-value=6.1e-09  Score=101.02  Aligned_cols=311  Identities=13%  Similarity=0.067  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT  200 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  200 (525)
                      .++.+....+++++.+.+.|+ .|.|..+.++...+..-.+...+ .|-+.+++.-.+.|+|.+..+..--.|++|..++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~  133 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTR  133 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCCh
Confidence            677788888999999999999 99999999999999887776655 5677888999999999999999999999999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHHHHhcc---------CCch--------------HHHHHHHHHHHHHHHhHhheeecC
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAIAYTNR---------SSSW--------------TIIYLWTSIPTLVYSGLLYIFVSE  257 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l~~~~~---------~~~w--------------r~~f~~~~~~~~~~~~~~~~~lpe  257 (525)
                      +.+.+-.++.......+.++|..+-....         ..+-              +..+.+...+..+.. +...+.|.
T Consensus       134 ~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~-i~~~~~p~  212 (461)
T KOG3098|consen  134 ETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSI-INFDFLPS  212 (461)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHh-hheeecCc
Confidence            99999999999999999998876633321         1111              111111111111211 22223332


Q ss_pred             CchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHH
Q 041759          258 SPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGI  337 (525)
Q Consensus       258 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  337 (525)
                      .. .      ..+.+.        . +...                    ........+++++|+........+..++..
T Consensus       213 ~~-~------~~~~~~--------~-~~~~--------------------~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~  256 (461)
T KOG3098|consen  213 KD-V------VNCKSS--------S-ETSF--------------------SELLKLTFKLLKTPKMLLLFPFFFYTGLET  256 (461)
T ss_pred             cc-h------hhhhhh--------c-cccH--------------------HHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Confidence            11 0      000000        0 0000                    000123445667776444444333333322


Q ss_pred             HHHHhhhhhcc--c-ccCCh-hHHHHHHHHHhcccccccCchhHHHHHHHHHh---hcChhHHHHHHHHHHHHHHHHHHh
Q 041759          338 GVVYYGMTLGI--E-NLGFD-IYLGVVFNALLEIPNLASTIPSFFLTFFLIQK---WNRKSSLLVLFIISGICSIMAVVA  410 (525)
Q Consensus       338 ~~~~~~~~~~~--~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~---~g~~~~~~~~~~~~~~~~~~~~~~  410 (525)
                      .+..-..|..+  . ..+.+ ....++..-..++    +.+.+....+.+.+|   +|+++.+.++..+..+..++....
T Consensus       257 Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~----g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~  332 (461)
T KOG3098|consen  257 SFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGL----GEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLS  332 (461)
T ss_pred             HHHHhccchhhhhhhhccCcchhHHHHHHHHHhH----HHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcc
Confidence            22111112111  1 22222 2222222222223    555777777777765   578888888888777777666544


Q ss_pred             cccc-------------ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 041759          411 NDIS-------------NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       411 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~  475 (525)
                      ....             +.......+..++.|++-.......+.++...+| +.|..+.++...-..+++.++-+...
T Consensus       333 ~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  333 FPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             ccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhh
Confidence            2210             1123466777778888888888888889999985 55788888877777666665544443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.22  E-value=9.1e-11  Score=118.62  Aligned_cols=143  Identities=14%  Similarity=0.052  Sum_probs=109.7

Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHH
Q 041759          102 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSL--TIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       102 ~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~--~~~~~~~~~l~~~r~l~  179 (525)
                      .+++++|+   +..+.++..+.+.++..++.+++|+++|| +|||+.+.....+..++..+  ....++.+.+.+.+++.
T Consensus       284 yl~~~~g~---s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (467)
T PRK09556        284 YAFQELGF---SKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFAL  359 (467)
T ss_pred             HHHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            45577899   99999999999999999999999999999 99998776655444443322  22345677777888888


Q ss_pred             hhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHH-HHHHHHHH-HHhcc------------CCchHHHHHHHHHHHH
Q 041759          180 GISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTI-GTLTLPAI-AYTNR------------SSSWTIIYLWTSIPTL  245 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~l~~~l-~~~~~------------~~~wr~~f~~~~~~~~  245 (525)
                      |++.............|.+|++.|+++.++.+....+ |..++|.+ |.+.+            ..+|+..|++..+..+
T Consensus       360 G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~  439 (467)
T PRK09556        360 GFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAI  439 (467)
T ss_pred             HHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHH
Confidence            8654433333335566999999999999999988886 76788776 77777            5689999988877777


Q ss_pred             HHH
Q 041759          246 VYS  248 (525)
Q Consensus       246 ~~~  248 (525)
                      +..
T Consensus       440 ~~~  442 (467)
T PRK09556        440 GCI  442 (467)
T ss_pred             HHH
Confidence            665

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.22  E-value=3.7e-10  Score=113.08  Aligned_cols=156  Identities=15%  Similarity=0.089  Sum_probs=122.3

Q ss_pred             HhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhH
Q 041759          341 YYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRM  420 (525)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (525)
                      ....|.+.+++|.+..+.+.+.+...+    +..++.++.|++.||+|||+.+.++.++.+++.++..+..+.     ..
T Consensus        43 ~~~~~~~~~~~g~s~~~~g~~~~~~~~----~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~~  113 (434)
T PRK11663         43 NAAMPEMLADLGLSRSDIGLLATLFYI----TYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSL-----WA  113 (434)
T ss_pred             HHhhHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHH-----HH
Confidence            445677788899998888888887777    777899999999999999999999999998888877665443     34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHH-
Q 041759          421 RIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGF-  497 (525)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~-  497 (525)
                      ..+..++.+++.+..++....++.|.+|+++|++++++.+....+|..++|.+.+.  ...++...|.+.+++.++..+ 
T Consensus       114 l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~  193 (434)
T PRK11663        114 FALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLF  193 (434)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            45555667777777788888999999999999999999999999999999988874  334667777776665554433 


Q ss_pred             HHHhccCC
Q 041759          498 FVICLPET  505 (525)
Q Consensus       498 ~~~~~~~~  505 (525)
                      ..++++|+
T Consensus       194 ~~~~~~~~  201 (434)
T PRK11663        194 LCWRLRDK  201 (434)
T ss_pred             HHHHcCCC
Confidence            33445543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.21  E-value=1e-09  Score=108.21  Aligned_cols=153  Identities=12%  Similarity=0.107  Sum_probs=121.6

Q ss_pred             hhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHH
Q 041759          344 MTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIG  423 (525)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (525)
                      +|.+.+++|.+..+.+...+...+    +..++.++.|++.||+|||+.+..+.++.+++.++..+.++.     +..++
T Consensus        43 l~~~~~~~g~s~~~~g~~~~~~~~----~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~  113 (394)
T PRK10213         43 LTPMAQDLGISEGVAGQSVTVTAF----VAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSF-----SLLLI  113 (394)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChH-----HHHHH
Confidence            455667889998888887777776    777899999999999999999999999999888777665433     46677


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHH-H
Q 041759          424 LELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFV-I  500 (525)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~-~  500 (525)
                      ..++.+++.+...+....++.|.+|+++|+.+.++......+|..++|.+.+.  ...++...|.+.+++.++..+.. .
T Consensus       114 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~  193 (394)
T PRK10213        114 GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIK  193 (394)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888889999999999999999999999999999999999999884  23456677777666555444333 3


Q ss_pred             hccCC
Q 041759          501 CLPET  505 (525)
Q Consensus       501 ~~~~~  505 (525)
                      ..||.
T Consensus       194 ~~p~~  198 (394)
T PRK10213        194 SLPSL  198 (394)
T ss_pred             HCCCC
Confidence            34554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.21  E-value=3.9e-10  Score=111.20  Aligned_cols=159  Identities=16%  Similarity=0.125  Sum_probs=125.0

Q ss_pred             HHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchh
Q 041759          340 VYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKR  419 (525)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (525)
                      .....|.+.+++|.+..+.+...+...+    +.+++.++.|++.||+|||+.+..+..+..++.+.....++.     .
T Consensus        24 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~----~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~   94 (385)
T TIGR00710        24 YLPAFPEIAADLSTPASIVQMTLTLYLL----GFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNI-----E   94 (385)
T ss_pred             hcccHHHHHHHhCCCHHHHHHHHHHHHH----HHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH-----H
Confidence            3334567778889998888888887777    777999999999999999999999998888888877665443     4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHH
Q 041759          420 MRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGF  497 (525)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~  497 (525)
                      ...+..++.+++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.  ...++...+.+.+++.++..+
T Consensus        95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  174 (385)
T TIGR00710        95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA  174 (385)
T ss_pred             HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            566677788888888888999999999999999999999999999999999998884  334566667776666655554


Q ss_pred             HH-HhccCCCC
Q 041759          498 FV-ICLPETRG  507 (525)
Q Consensus       498 ~~-~~~~~~~~  507 (525)
                      .. +..||+++
T Consensus       175 ~~~~~~~~~~~  185 (385)
T TIGR00710       175 LIFFILPETLP  185 (385)
T ss_pred             HHHHhCCCCCC
Confidence            43 44555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.21  E-value=3.7e-10  Score=111.39  Aligned_cols=172  Identities=11%  Similarity=0.061  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHH
Q 041759          322 WALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISG  401 (525)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~  401 (525)
                      +++...+..++..++........+....+.+.+....+...+...+    ...+..++.|++.||+|||+++.++..+..
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l----~~~l~~~~~G~laDr~grr~vl~~~~~~~~   79 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVL----AYIVLAPFVGAFADSFPKGRVMFIANGIKL   79 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----HHHHHHhhhhHhhhccCCchhhHHHHHHHH
Confidence            3444444444444444444444455567777777777777666666    666889999999999999999999998887


Q ss_pred             HHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc-cCc
Q 041759          402 ICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG-SNN  480 (525)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~-~~~  480 (525)
                      ++.+.+.... .    .   ++..++.+++.+...|...+++.|.+|+++|+++.++......+|.+++|.+.|.. ...
T Consensus        80 ~~~~~~~~~~-~----~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~  151 (393)
T PRK11195         80 LGCLLMLFGI-H----P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH  151 (393)
T ss_pred             HHHHHHHHHH-H----H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766654432 1    1   34456778888889999999999999999999999999999999999999999853 222


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhccCC
Q 041759          481 EFVSYGVFGLVIICCGFFVICLPET  505 (525)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~  505 (525)
                      +...+.+.+.+.+++.+..+.+||.
T Consensus       152 ~~~~~~i~~~~~~~~~~~~~~l~~~  176 (393)
T PRK11195        152 AEAALAVCALIYLLAALFNLFIPRL  176 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            3333333333333333444556654

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.21  E-value=3e-10  Score=112.32  Aligned_cols=158  Identities=16%  Similarity=0.169  Sum_probs=126.2

Q ss_pred             HHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccch
Q 041759          339 VVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGK  418 (525)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (525)
                      ......|.+.+++|.+..+.+.+.+...+    +..++.++.|++.||+|||+.+..+.++..++..+..+..+.     
T Consensus        12 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~----~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~-----   82 (399)
T TIGR00893        12 NLSFAAPMLQEDLGLSAAQYGYVFSAFSW----GYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY-----   82 (399)
T ss_pred             hhhHhHHHHHHhhCCChhhHHHHHHHHHH----HHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH-----
Confidence            33444567777889998888888888777    777999999999999999999999998888888877766543     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHH
Q 041759          419 RMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCG  496 (525)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~  496 (525)
                      ...++..++.+++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.  ...++...+.+.+++.++..
T Consensus        83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            4667777888888888889999999999999999999999999999999999998874  33456677777766665555


Q ss_pred             HHHH-hccCC
Q 041759          497 FFVI-CLPET  505 (525)
Q Consensus       497 ~~~~-~~~~~  505 (525)
                      ++.+ ..+++
T Consensus       163 ~~~~~~~~~~  172 (399)
T TIGR00893       163 VLWLKFIPDP  172 (399)
T ss_pred             HHhhheecCC
Confidence            4433 34443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.21  E-value=5.1e-10  Score=111.18  Aligned_cols=156  Identities=13%  Similarity=0.065  Sum_probs=120.2

Q ss_pred             HhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhH
Q 041759          341 YYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRM  420 (525)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (525)
                      ....+.+.+++|.+..+.+...+...+    +..++.++.|++.||+|||+.+..+.++..++.++..+..+.     ..
T Consensus        32 ~~~~~~l~~~~~~s~~~~g~~~~~~~~----~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~~  102 (405)
T TIGR00891        32 ALVLAEVAGEFGLTTVDAASLISAALI----SRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGY-----IT  102 (405)
T ss_pred             HHHHHHHHHHhCCChhhHHHHHHHHHH----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccH-----HH
Confidence            344466667789998888888887777    777999999999999999999999988888887777665443     45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc--cC--chhHHHHHHHHHHHHHH
Q 041759          421 RIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG--SN--NEFVSYGVFGLVIICCG  496 (525)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~--~~--~~~~~~~~~~~~~~~~~  496 (525)
                      .++..++.+++.+..++...+++.|.+|+++|+++.++.+....+|..++|.+.+..  ..  ++...+.+.++..++..
T Consensus       103 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       103 MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            667778888888888899999999999999999999999999999999999887741  12  24555555444444444


Q ss_pred             HHHHhccCC
Q 041759          497 FFVICLPET  505 (525)
Q Consensus       497 ~~~~~~~~~  505 (525)
                      +.....||+
T Consensus       183 ~~~~~~~~~  191 (405)
T TIGR00891       183 WLRKNIPEA  191 (405)
T ss_pred             HHHHhCCCC
Confidence            444455664

>TIGR00897 2A0118 polyol permease family

Probab=99.21  E-value=1.9e-10  Score=114.05  Aligned_cols=143  Identities=13%  Similarity=0.043  Sum_probs=112.0

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHH-HHHHHHHHHHHHHHh-----hhhHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLF-LSCLTMSVATSLTIF-----SNNLWIYS  173 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~-~~~~~~~i~~~~~~~-----~~~~~~l~  173 (525)
                      .|.+.+++|.   +..+.+++.+...++..++.++.|+++|| +|||+.+. .+.+..+++.+...+     .++.+.++
T Consensus       245 ~p~~~~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~  320 (402)
T TIGR00897       245 LPMFVAELGF---STSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVAL  320 (402)
T ss_pred             HHHHHHHcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHH
Confidence            5666677898   88889999999999999999999999999 99988764 333334443333322     24677778


Q ss_pred             HHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHH
Q 041759          174 LLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       174 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~  248 (525)
                      +..++.|++.+...+. ...+.|.. +++|+++.++.+....+|..++|.+ +.+.+..||+..+++.++..++..
T Consensus       321 ~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~  394 (402)
T TIGR00897       321 IIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSA  394 (402)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            8889999988876543 44556754 5689999999999999999999988 677777899999999988877766

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.20  E-value=8.5e-10  Score=108.58  Aligned_cols=172  Identities=14%  Similarity=0.046  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHH
Q 041759          326 RTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSI  405 (525)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~  405 (525)
                      .....+............+|.+.+++|.+....+...+...+    +.+++.++.|++.||+|||+.+..+..+.+++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~----~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   83 (382)
T PRK10091          8 LALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYAL----GVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA   83 (382)
T ss_pred             HHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHH----HHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence            333334444444444455677778899998888888888877    8889999999999999999999999999998888


Q ss_pred             HHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhH
Q 041759          406 MAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFV  483 (525)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~  483 (525)
                      +..+.++.     +..++..++.+++.+...+....+..|.+|+++|+.++++......+|..++|.+.+.  ...++..
T Consensus        84 l~~~~~~~-----~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~  158 (382)
T PRK10091         84 MFTLSSSY-----LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRY  158 (382)
T ss_pred             HHHHhCcH-----HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHH
Confidence            77766543     4566677888888888778888888999999999999999988889999999888774  2345677


Q ss_pred             HHHHHHHHHHHHHHH-HHhccCCC
Q 041759          484 SYGVFGLVIICCGFF-VICLPETR  506 (525)
Q Consensus       484 ~~~~~~~~~~~~~~~-~~~~~~~~  506 (525)
                      .|.+.+++.++..+. .+++||.+
T Consensus       159 ~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        159 TFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCC
Confidence            777777665554443 34566643

>PRK03699 putative transporter; Provisional

Probab=99.20  E-value=7.8e-11  Score=116.43  Aligned_cols=151  Identities=13%  Similarity=0.018  Sum_probs=123.0

Q ss_pred             cccee-eccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 041759          100 ALTII-SEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFF  178 (525)
Q Consensus       100 ~~~i~-~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  178 (525)
                      .|.+. +++|+   +..+.+++.+.+.++..++.++.|+++|| +|||+.+.....+..+..++....++.+.+.+..++
T Consensus       228 ~p~~l~~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (394)
T PRK03699        228 VPEYAQKKFGM---SLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILG  303 (394)
T ss_pred             HHHHHHHHcCC---ChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            34444 67899   99999999999999999999999999999 999999988887777777777777788777788889


Q ss_pred             HhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeec
Q 041759          179 SGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVS  256 (525)
Q Consensus       179 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lp  256 (525)
                      .|++.+...+...++..|..| +++++..+.......+|..++|.+ +.+.+..||+..+++.+++.++.. +....++
T Consensus       304 ~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~-~~~~~~~  380 (394)
T PRK03699        304 LGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVF-VMCILLG  380 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHH-HHHHHHH
Confidence            999888788877777777665 446777888888889999999988 666677899999998888877776 4344444

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.19  E-value=3.1e-10  Score=114.41  Aligned_cols=160  Identities=9%  Similarity=0.029  Sum_probs=120.2

Q ss_pred             HHHHHHHHhhhhhcccc---cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHh-hcChhHHHHHHHHHHHHHHHHHH
Q 041759          334 GFGIGVVYYGMTLGIEN---LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQK-WNRKSSLLVLFIISGICSIMAVV  409 (525)
Q Consensus       334 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~-~g~~~~~~~~~~~~~~~~~~~~~  409 (525)
                      .++.......++.++.+   +|.+..+.+...+...+    +..++.+++|+++|| +|||+.+.++.++.+++.+++.+
T Consensus        23 ~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~----~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~   98 (475)
T TIGR00924        23 RFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSA----LVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM   98 (475)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH----HHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh
Confidence            34444444555666543   78898888888888777    777999999999999 89999999999999998887776


Q ss_pred             hccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcch---hhhhhHHHHHHHHHHHHHHHHHHhhc--cCchhHH
Q 041759          410 ANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCV---RNSATSIMRLAIIFAAIFSSVLVAAG--SNNEFVS  484 (525)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---r~~~~~~~~~~~~~g~~~~p~i~~~~--~~~~~~~  484 (525)
                      ..+.     ....+...+.+++.+...+...+++.+.+|++.   |+++.++.+...++|..++|.+.+..  ..++...
T Consensus        99 ~~~~-----~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~  173 (475)
T TIGR00924        99 SIYP-----DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVG  173 (475)
T ss_pred             cccH-----hHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence            5433     244455556677777777888889999988653   88899999999999999999998852  3356777


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 041759          485 YGVFGLVIICCGFFVICL  502 (525)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~  502 (525)
                      |.+.++..+++.+..++.
T Consensus       174 f~~~~~~~~~~~l~~~~~  191 (475)
T TIGR00924       174 FNLAAVGMVIGLLTFFAG  191 (475)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            777666555554444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.19  E-value=6.4e-10  Score=111.32  Aligned_cols=142  Identities=15%  Similarity=0.143  Sum_probs=115.6

Q ss_pred             HHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccc
Q 041759          338 GVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAG  417 (525)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (525)
                      ....+..+.+.+++|.+..+.+...+...+    +..++.++.|++.||+|||+++..+.++.+++.++..+..+.    
T Consensus        35 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~----~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~----  106 (426)
T PRK12307         35 MLIFYIMYLIKADLGLTDMEGAFLATAAFI----GRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGV----  106 (426)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHH----
Confidence            344555677778889998888888877777    777999999999999999999999999999988877766543    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHH
Q 041759          418 KRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVF  488 (525)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~  488 (525)
                       ...++.-++.+++.+..++....++.|.+|++.|+++.++......+|.+++|.+.+.  ...++...+.+.
T Consensus       107 -~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~  178 (426)
T PRK12307        107 -IMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG  178 (426)
T ss_pred             -HHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence             4667777888888888889999999999999999999999999889999999888764  223455566553

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.19  E-value=1.2e-10  Score=115.01  Aligned_cols=139  Identities=19%  Similarity=0.129  Sum_probs=109.7

Q ss_pred             eeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHH--HHHHh--hhhHHHHHHHHHH
Q 041759          103 IISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVAT--SLTIF--SNNLWIYSLLRFF  178 (525)
Q Consensus       103 i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~--~~~~~--~~~~~~l~~~r~l  178 (525)
                      +++++|.   +..+.+...+...++..++.++.|+++|| +|||+.+..+..+..+..  +...+  .++.+.+++..++
T Consensus       246 ~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (394)
T TIGR00883       246 LTQTLGL---SANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLG  321 (394)
T ss_pred             HHHhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            3467888   88899999999999999999999999999 999998776555444333  22222  2467777888899


Q ss_pred             HhhcccchhhhhheeeEeeecCcchhhHHhH-HHHHHHHHHHHHHHH-HHhccCCc-hHHHHHHHHHHHH
Q 041759          179 SGISRATIGTCTIVLLTEKVGTEWRGLVGIL-DSFFFTIGTLTLPAI-AYTNRSSS-WTIIYLWTSIPTL  245 (525)
Q Consensus       179 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~l~~~l-~~~~~~~~-wr~~f~~~~~~~~  245 (525)
                      .|++.+...+...+++.|.+|+++|+++.++ .+.+..+|..++|.+ +.+.+..| |++.++...+..+
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       322 LALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             HHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            9999988999999999999999999999987 456677888899988 55556566 8887777665544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.19  E-value=2.5e-10  Score=112.65  Aligned_cols=154  Identities=15%  Similarity=0.076  Sum_probs=119.5

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN-NLWIYSLLRFF  178 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l  178 (525)
                      .|.+.+++|.   +..+.|...+.+.++..++.++.|++.|| +|||+.+..+..+..++.++....+ +...+  .-++
T Consensus       228 lp~~l~~~g~---s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l  301 (393)
T PRK09705        228 LPAFYIEIGA---SAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMV  301 (393)
T ss_pred             HHHHHHHcCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHH
Confidence            4445556888   99999999999999999999999999999 9999999988888777766554333 32222  2346


Q ss_pred             HhhcccchhhhhheeeEeeec-CcchhhHHhHHHHHHHHHHHHHHHH-HHhccCC-chHHHHHHHHHHHHHHHhHhheee
Q 041759          179 SGISRATIGTCTIVLLTEKVG-TEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSS-SWTIIYLWTSIPTLVYSGLLYIFV  255 (525)
Q Consensus       179 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~-~wr~~f~~~~~~~~~~~~~~~~~l  255 (525)
                      .|++.+...+.......+..+ +++|++..++.+....++..++|.+ +++.+.. +|+..|.+.++..++..+....+.
T Consensus       302 ~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (393)
T PRK09705        302 CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA  381 (393)
T ss_pred             HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            688888777877766666664 5789999999999999999999988 5665544 488888888877777775667777


Q ss_pred             cCCc
Q 041759          256 SESP  259 (525)
Q Consensus       256 pesp  259 (525)
                      ||++
T Consensus       382 ~~~~  385 (393)
T PRK09705        382 PARF  385 (393)
T ss_pred             cccc
Confidence            8764

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.17  E-value=1.7e-09  Score=102.56  Aligned_cols=155  Identities=12%  Similarity=0.074  Sum_probs=133.8

Q ss_pred             HHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchh
Q 041759          340 VYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKR  419 (525)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (525)
                      ..-.+|...++++.+...++...+...+    +..++.++...+.+|+.||++++....+..++.++..+.++.     .
T Consensus        32 ~~gLLp~iA~dl~vs~~~aG~lis~yAl----~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f-----~  102 (394)
T COG2814          32 PVGLLPPIAADLGVSEGAAGQLITAYAL----GVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSF-----A  102 (394)
T ss_pred             HHhchHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccH-----H
Confidence            3344577778899999999999998888    888999999999999999999999999999999999998776     5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHH
Q 041759          420 MRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGF  497 (525)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~  497 (525)
                      ...+.-++.++..+..+++....+.++.|+++|++++++...-..++.++|..+..+  +..++...|+..+++.++..+
T Consensus       103 ~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~  182 (394)
T COG2814         103 VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALL  182 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            788899999999999999999999999999999999999999888888887766654  334688889988888887765


Q ss_pred             H-HHhcc
Q 041759          498 F-VICLP  503 (525)
Q Consensus       498 ~-~~~~~  503 (525)
                      . ...+|
T Consensus       183 ~~~~~lP  189 (394)
T COG2814         183 LLWKLLP  189 (394)
T ss_pred             HHHHhCC
Confidence            4 45567

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.16  E-value=2.9e-10  Score=106.47  Aligned_cols=154  Identities=14%  Similarity=0.075  Sum_probs=131.8

Q ss_pred             hhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHH
Q 041759          342 YGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMR  421 (525)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (525)
                      ...|.+.++.+++..+.+.+.+...+    ..-++.++.|.++||.+.|+.+.++++++++..+++++.+..     ..+
T Consensus        50 ~a~p~l~e~~~lsk~~lG~i~s~f~i----~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~-----~~~  120 (448)
T COG2271          50 LAMPALIEDGGLSKTQLGILGSAFSI----TYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSL-----FLF  120 (448)
T ss_pred             hccHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHH-----HHH
Confidence            44477778888999999999888888    777999999999999999999999999999999999988754     578


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHH--hh--ccCchhHHHHHHHHHHHHHHH
Q 041759          422 IGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLV--AA--GSNNEFVSYGVFGLVIICCGF  497 (525)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~--~~--~~~~~~~~~~~~~~~~~~~~~  497 (525)
                      .++..+.+.+.+..+|.....+..-+|++.||+..++-++..++|+.+.|.+.  +.  ...++...|++-+++.++..+
T Consensus       121 ~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival  200 (448)
T COG2271         121 AVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVAL  200 (448)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999888888  53  333677888888887776665


Q ss_pred             HH-HhccC
Q 041759          498 FV-ICLPE  504 (525)
Q Consensus       498 ~~-~~~~~  504 (525)
                      +. +.+++
T Consensus       201 ~~~~~~rd  208 (448)
T COG2271         201 ILLFLLRD  208 (448)
T ss_pred             HHHHHhCC
Confidence            44 44443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.16  E-value=2.4e-09  Score=105.85  Aligned_cols=170  Identities=11%  Similarity=0.064  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhc-ccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHH
Q 041759          326 RTLALMVPGFGIGVVYYGMTLG-IENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICS  404 (525)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~  404 (525)
                      .+...++...+....+..++.+ .++.|.+....+...+...+    ...+..++.|+++||+|||+.+..+..+..++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l----~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~   90 (400)
T PRK11646         15 LLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQF----IQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGF   90 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH----HHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHH
Confidence            3444445555555555455544 46789999998888887666    555778899999999999999999999999988


Q ss_pred             HHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh-ccCchhH
Q 041759          405 IMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA-GSNNEFV  483 (525)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~-~~~~~~~  483 (525)
                      +.+...++     ++..++..++.+++.+...+...+++.+.+|+++|+++.|+.+....+|..++|.+.+. ...++..
T Consensus        91 ~~~~~~~~-----~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~  165 (400)
T PRK11646         91 ATMAIAHE-----PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRL  165 (400)
T ss_pred             HHHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            88766543     33556666777777777778888899999999999999999999999999999999884 2334556


Q ss_pred             HHHHHHHHHHHHHHH-HHhccC
Q 041759          484 SYGVFGLVIICCGFF-VICLPE  504 (525)
Q Consensus       484 ~~~~~~~~~~~~~~~-~~~~~~  504 (525)
                      .|++.+++.++..++ .+..|+
T Consensus       166 ~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        166 VCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCc
Confidence            666666555554433 344454

>TIGR00895 2A0115 benzoate transport

Probab=99.16  E-value=7.2e-10  Score=109.78  Aligned_cols=158  Identities=14%  Similarity=0.057  Sum_probs=121.7

Q ss_pred             HHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccch
Q 041759          339 VVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGK  418 (525)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (525)
                      ...+..|.+.+++|.+....+.+.+...+    +.+++.++.+++.||+|||+.+..+..+..++.++.....+.     
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----  105 (398)
T TIGR00895        35 AMGFAAPAISAEWGLDPVQLGFLFSAGLI----GMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNV-----  105 (398)
T ss_pred             HHHhhHHHHhhccCCCHHHHHHHHHHHHH----HHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccch-----
Confidence            34455677788889988888887777776    777999999999999999999999988888887776665433     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHH
Q 041759          419 RMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCG  496 (525)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~  496 (525)
                      ...++..++.+++.+...+...++..|.+|++.|+++.++......+|..++|.+.+.  ...++...+.+.+++.++..
T Consensus       106 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  185 (398)
T TIGR00895       106 TQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL  185 (398)
T ss_pred             HHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHH
Confidence            4566677778888888889999999999999999999999999999999999998874  23345556666654444333


Q ss_pred             -HHHHhccCC
Q 041759          497 -FFVICLPET  505 (525)
Q Consensus       497 -~~~~~~~~~  505 (525)
                       +..++++++
T Consensus       186 ~~~~~~~~~~  195 (398)
T TIGR00895       186 LLLMRFLPES  195 (398)
T ss_pred             HHHHHhCCCC
Confidence             334455554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.16  E-value=2.4e-09  Score=108.26  Aligned_cols=151  Identities=13%  Similarity=0.012  Sum_probs=106.9

Q ss_pred             hhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHH
Q 041759          343 GMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRI  422 (525)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (525)
                      ..+.+.+++|.+..+.+...+...+    +..++.++.|++.||+|||+++..+.++.+++.++..+..+.     ...+
T Consensus        58 ~~~~l~~~~gls~~~~g~~~~~~~~----~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~-----~~l~  128 (476)
T PLN00028         58 LLPIIRDNLNLTKSDIGNAGIASVS----GSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSA-----TGFI  128 (476)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCH-----HHHH
Confidence            3456677889888877776666555    777899999999999999999999888888877766665433     3444


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh-----c------cCchhHHHHHHHHH
Q 041759          423 GLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA-----G------SNNEFVSYGVFGLV  491 (525)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~-----~------~~~~~~~~~~~~~~  491 (525)
                      +..++.+++.+.. .....++.|.+|++.|+++.|+.+....+|..+++.+.+.     .      ..++...|.+.+++
T Consensus       129 ~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l  207 (476)
T PLN00028        129 AVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLL  207 (476)
T ss_pred             HHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Confidence            5556666665543 3345578899999999999999987777776665544431     1      12567788887777


Q ss_pred             HHHHHHHHHhcc
Q 041759          492 IICCGFFVICLP  503 (525)
Q Consensus       492 ~~~~~~~~~~~~  503 (525)
                      .++..++.++++
T Consensus       208 ~l~~~l~~~~~~  219 (476)
T PLN00028        208 HIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHHHc
Confidence            766655544443

>PRK10504 putative transporter; Provisional

Probab=99.14  E-value=2.1e-09  Score=109.04  Aligned_cols=155  Identities=8%  Similarity=-0.008  Sum_probs=120.5

Q ss_pred             HHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccc
Q 041759          336 GIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISN  415 (525)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (525)
                      .........|.+.+++|.+....+...+...+    +..++.++.|++.||+|||+.+..+..+..++.+......+   
T Consensus        25 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~----~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~---   97 (471)
T PRK10504         25 DTTIVNTALPSMAQSLGESPLHMHMVIVSYVL----TVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGT---   97 (471)
T ss_pred             hHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCC---
Confidence            33445556788888899998887777666666    66688999999999999999999888888777766555432   


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHH
Q 041759          416 AGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVII  493 (525)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~  493 (525)
                        ....++..++.+++.+...+....++.|.+|++.|+++.++.+....+|..++|.+.+.  ...++.+.|.+...+..
T Consensus        98 --~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~  175 (471)
T PRK10504         98 --LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGI  175 (471)
T ss_pred             --HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHH
Confidence              34566777888888888888999999999999999999999999999999999999884  33456667776665555


Q ss_pred             HHHHHH
Q 041759          494 CCGFFV  499 (525)
Q Consensus       494 ~~~~~~  499 (525)
                      +..+..
T Consensus       176 l~~~~~  181 (471)
T PRK10504        176 IGAIAT  181 (471)
T ss_pred             HHHHHH
Confidence            554443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.14  E-value=1.2e-09  Score=108.53  Aligned_cols=153  Identities=11%  Similarity=0.030  Sum_probs=109.2

Q ss_pred             HHhhhhhcc-cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHhccccccc
Q 041759          340 VYYGMTLGI-ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKW-NRKSSLLVLFIISGICSIMAVVANDISNAG  417 (525)
Q Consensus       340 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (525)
                      ....++.++ +++|.+...+..+.+....    ...++.+++|+++||+ |||+.+.++.++..++.+++......    
T Consensus        28 ~~~~L~~yL~~~lgls~~~a~~i~~~~~~----~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~----   99 (493)
T PRK15462         28 MRALLILYLTNQLKYDDNHAYELFSAYCS----LVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIH----   99 (493)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcc----
Confidence            333445554 4578888888877777666    6668899999999999 99999999999988887665532211    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccccCcc--hhhhhhHHHHHHHHHHHHHHHHHHhhc--cCchhHHHHHHHHHHH
Q 041759          418 KRMRIGLELASLFSAYIAYTVIFIYAIELFPTC--VRNSATSIMRLAIIFAAIFSSVLVAAG--SNNEFVSYGVFGLVII  493 (525)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~~~~~~~~~~g~~~~p~i~~~~--~~~~~~~~~~~~~~~~  493 (525)
                      .....+...+..++.+...+...++..|.+|++  .|.++.++.+...++|+.++|.+.++.  ..++...|.+.++..+
T Consensus       100 ~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~  179 (493)
T PRK15462        100 PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMI  179 (493)
T ss_pred             hhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Confidence            112233333344555555566778899999875  689999999999999999999999963  3466777777665555


Q ss_pred             HHHHHHH
Q 041759          494 CCGFFVI  500 (525)
Q Consensus       494 ~~~~~~~  500 (525)
                      ++.+.++
T Consensus       180 l~li~~~  186 (493)
T PRK15462        180 AGLVIFL  186 (493)
T ss_pred             HHHHHHH
Confidence            5544443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.14  E-value=1.7e-09  Score=108.95  Aligned_cols=183  Identities=10%  Similarity=0.053  Sum_probs=136.8

Q ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHH
Q 041759          316 ELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLV  395 (525)
Q Consensus       316 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~  395 (525)
                      ..+|+|.++.......+..++..+.....+.+..+...++...+++.....+    -.++.++++|.++||++||++++.
T Consensus         5 aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~L----P~~Llsl~aG~laDr~drrrili~   80 (524)
T PF05977_consen    5 APLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTL----PILLLSLFAGALADRFDRRRILIL   80 (524)
T ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----HHHHHHHHHHHHhhcccchHHHHH
Confidence            3477888888777777787777777666676666666677777666666555    444788899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 041759          396 LFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~  475 (525)
                      +-++.++..+++.+.......+.+.++++.++.+++.....|...+++.|++|+++...+.++.....++..++||.+.|
T Consensus        81 ~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG  160 (524)
T PF05977_consen   81 SQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGG  160 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHH
Confidence            88887766555544322211234567788888889989999999999999999999999999999999999999999998


Q ss_pred             h--ccCchhHHHHHHHHHHHHHHHHHHhc
Q 041759          476 A--GSNNEFVSYGVFGLVIICCGFFVICL  502 (525)
Q Consensus       476 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (525)
                      .  ...+....|.+-++..++..+.....
T Consensus       161 ~Lva~~G~~~~f~inalsfl~~i~~l~~~  189 (524)
T PF05977_consen  161 ILVAFFGAAAAFLINALSFLISILALLRW  189 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4  33455666666665555544444444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.14  E-value=2.6e-09  Score=107.34  Aligned_cols=120  Identities=18%  Similarity=0.248  Sum_probs=99.8

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhcccchhhhhh
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS-NNLWIYSLLRFFSGISRATIGTCTI  191 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~  191 (525)
                      +..+.+++.+...++..++.+++|+++|| +|||+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+...
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  333 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVW  333 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567778888899999999999999999 999999999998888888777665 4667778888999999999999989


Q ss_pred             eeeEeeec-------CcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCch
Q 041759          192 VLLTEKVG-------TEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSW  233 (525)
Q Consensus       192 ~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~w  233 (525)
                      ++++|..+       ++.+|...++.+....+|..+++.+ +.+++..||
T Consensus       334 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       334 ALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99888765       4567999999999999999999887 555443333

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.13  E-value=8.9e-10  Score=108.42  Aligned_cols=140  Identities=12%  Similarity=0.019  Sum_probs=116.5

Q ss_pred             eeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 041759          103 IISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGIS  182 (525)
Q Consensus       103 i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~  182 (525)
                      +.+|.|.   +..+.|.+.+...++..+..++.|++.|| +|+|+.+..+.++.+++.++.+++++.+.+++..++.|++
T Consensus       231 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  306 (382)
T PRK11128        231 YWQAAGY---SASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT  306 (382)
T ss_pred             HHHHCCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            3356888   88899999999999999999999999999 9999999999999999888888899999999999999999


Q ss_pred             ccchhhhhheeeEeeecCcchhhHHhHHH-HHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHH
Q 041759          183 RATIGTCTIVLLTEKVGTEWRGLVGILDS-FFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       183 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~  248 (525)
                      .+...+....++.+. +++++++..+..+ ....+|..+||.+ |.+.+..|+ ..|+..+++.++.+
T Consensus       307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            998888888888886 5566788888776 5567788899988 555566677 46666666665544

>PRK09952 shikimate transporter; Provisional

Probab=99.13  E-value=9.7e-10  Score=110.09  Aligned_cols=152  Identities=16%  Similarity=0.166  Sum_probs=109.6

Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHh---h-hhHHHHHHHHH
Q 041759          102 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIF---S-NNLWIYSLLRF  177 (525)
Q Consensus       102 ~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~---~-~~~~~l~~~r~  177 (525)
                      .+++++|.   +......+.....+...++.++.|+++|| +|||+++..+.++..++.+....   . ++.+.+++..+
T Consensus       276 y~~~~~g~---s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (438)
T PRK09952        276 YSTQNLGL---PRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIM  351 (438)
T ss_pred             HHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            34566777   66655555666667778888999999999 99999988887766555433322   2 23455555667


Q ss_pred             HHhhcccchhhhhheeeEeeecCcchhhHHhHHH-HHHHHHHHHHHHH-HHhcc--CCchHHHHHHHHHHHHHHHhHhhe
Q 041759          178 FSGISRATIGTCTIVLLTEKVGTEWRGLVGILDS-FFFTIGTLTLPAI-AYTNR--SSSWTIIYLWTSIPTLVYSGLLYI  253 (525)
Q Consensus       178 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~l~~~l-~~~~~--~~~wr~~f~~~~~~~~~~~~~~~~  253 (525)
                      +.|++.+...+...+++.|.+|.+.|+...++.. .+..+|..++|.+ +.+.+  ..+|+..+...++..++.. +..+
T Consensus       352 l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~-v~~~  430 (438)
T PRK09952        352 LANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISA-MTAL  430 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH-HHHH
Confidence            7788888888888899999999999988888744 4455888888987 55544  2358888888777777766 4445


Q ss_pred             eecCC
Q 041759          254 FVSES  258 (525)
Q Consensus       254 ~lpes  258 (525)
                      .++|+
T Consensus       431 ~~~~~  435 (438)
T PRK09952        431 LMKDN  435 (438)
T ss_pred             Hcccc
Confidence            55653

>PRK11043 putative transporter; Provisional

Probab=99.13  E-value=4.2e-09  Score=104.45  Aligned_cols=152  Identities=11%  Similarity=0.017  Sum_probs=115.7

Q ss_pred             hhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHH
Q 041759          345 TLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGL  424 (525)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (525)
                      +.+.++++.+..+.+...+...+    +..++.++.|+++||+|||+.+..+..+..++.++.....+.     ....+.
T Consensus        30 ~~i~~~~~~s~~~~g~~~s~~~~----~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~  100 (401)
T PRK11043         30 KAIQADLQTSASAVSASLSLFLA----GFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA-----AQLLVL  100 (401)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH-----HHHHHH
Confidence            34566788898888888888877    777999999999999999999999988888777776665433     345555


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHHHhc
Q 041759          425 ELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFVICL  502 (525)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (525)
                      .++.+++.+...+....+..|.+|++.++...+..+....++..++|.+.+.  ...++...+.+.+++.++..+..+++
T Consensus       101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (401)
T PRK11043        101 RFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL  180 (401)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence            6666677666667777888999999888888888888888899999998874  33456677777766666655555555


Q ss_pred             cCC
Q 041759          503 PET  505 (525)
Q Consensus       503 ~~~  505 (525)
                      ++.
T Consensus       181 ~~~  183 (401)
T PRK11043        181 KPS  183 (401)
T ss_pred             CCC
Confidence            443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.12  E-value=1.3e-09  Score=111.22  Aligned_cols=162  Identities=15%  Similarity=0.118  Sum_probs=127.0

Q ss_pred             HHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcccc
Q 041759          335 FGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDIS  414 (525)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (525)
                      +.........|.+.+++|.+....+...+...+    +.+++.++.|++.||+|||+.+.++..+..++.++.....+  
T Consensus        16 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~----~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--   89 (485)
T TIGR00711        16 LDSTIVNVAIPTIAGDLGSSLSQVQWVITSYML----ANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPN--   89 (485)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHH----HHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCC--
Confidence            334555566788888899888887777777777    77799999999999999999999999998888887766543  


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHH
Q 041759          415 NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVI  492 (525)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~  492 (525)
                         ....++..++.+++.+...+...+++.|.+|++.|+++.++......+|..++|.+.+.  ...++.+.|++.+.+.
T Consensus        90 ---~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~  166 (485)
T TIGR00711        90 ---LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIG  166 (485)
T ss_pred             ---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHH
Confidence               34667777888888888889999999999999999999999999999999999999885  3345566666665555


Q ss_pred             HHHHHH-HHhccCC
Q 041759          493 ICCGFF-VICLPET  505 (525)
Q Consensus       493 ~~~~~~-~~~~~~~  505 (525)
                      ++..++ .++.++.
T Consensus       167 ~~~~~~~~~~~~~~  180 (485)
T TIGR00711       167 IIVVVVAFFILPRD  180 (485)
T ss_pred             HHHHHHHHHHcCCc
Confidence            544443 3444543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.11  E-value=3.6e-09  Score=104.74  Aligned_cols=133  Identities=8%  Similarity=0.019  Sum_probs=110.2

Q ss_pred             HHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcccccc
Q 041759          337 IGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNA  416 (525)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (525)
                      .+...-..|.+.++++.+..+.+.+.+...+    +..++.+..+++.||+|||+.+.++..+.+++.++.......  .
T Consensus        19 ~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~----g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~--~   92 (410)
T TIGR00885        19 NDITNPMVPQFQQAFTLTAFQAALVQSAFYG----GYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEI--M   92 (410)
T ss_pred             HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh--c
Confidence            3444455677788899999898888888777    888999999999999999999999999999988776544321  1


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 041759          417 GKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~  475 (525)
                      ++...++..++.+++.+...+....++.+..|+++|++..++.+....+|..++|.+.+
T Consensus        93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~  151 (410)
T TIGR00885        93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQ  151 (410)
T ss_pred             cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777788889989988888889999999999999999999999999999988876

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.11  E-value=3.7e-09  Score=104.98  Aligned_cols=154  Identities=14%  Similarity=0.102  Sum_probs=119.1

Q ss_pred             hhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHH
Q 041759          344 MTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIG  423 (525)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (525)
                      +|...++++.+........+...+    +..++.++.|+++||+|||+++..+..+..++.++.....+.     ...++
T Consensus        39 l~~i~~~~~~~~~~~~~~~s~~~~----~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~-----~~l~~  109 (413)
T PRK15403         39 IINVVRDFNADVSLAPASVSLYLA----GGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSM-----TQFLI  109 (413)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHH----HHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCH-----HHHHH
Confidence            344556778888888888887777    777899999999999999999999988888887777665433     45566


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHH-HH
Q 041759          424 LELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFF-VI  500 (525)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~-~~  500 (525)
                      .-++.+++.+...+....+..|.+|++.+++.+++.+....+|..++|.+.+.  ...++...|.+.+++.+++.+. .+
T Consensus       110 ~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  189 (413)
T PRK15403        110 ARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL  189 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            66777777666566677888899999999999999999999999999998874  2336777888777776666554 34


Q ss_pred             hccCCC
Q 041759          501 CLPETR  506 (525)
Q Consensus       501 ~~~~~~  506 (525)
                      .+||++
T Consensus       190 ~lp~~~  195 (413)
T PRK15403        190 AMPETV  195 (413)
T ss_pred             hCCCCc
Confidence            467754

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.11  E-value=2.9e-09  Score=108.90  Aligned_cols=141  Identities=12%  Similarity=0.072  Sum_probs=113.8

Q ss_pred             HHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccch
Q 041759          339 VVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGK  418 (525)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (525)
                      ......+.+.+++|.+....+...+...+    +.+++.++.|++.||+|||+.+..+.++.+++.++..+..+.     
T Consensus        38 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~----~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----  108 (496)
T PRK03893         38 LITLVLTEVQGEFGLTTVQAASLISAAFI----SRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGY-----  108 (496)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHH-----
Confidence            33444567777889998888888877777    777999999999999999999999998888888877765443     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHH
Q 041759          419 RMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVF  488 (525)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~  488 (525)
                      ...++..++.+++.+..++....++.|.+|++.|+.+.++......+|..++|.+.+.  ...++...|.+.
T Consensus       109 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~  180 (496)
T PRK03893        109 WTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG  180 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            4566677788888888888889999999999999999999999999999999998874  233455555543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.11  E-value=1.2e-09  Score=110.03  Aligned_cols=145  Identities=12%  Similarity=0.011  Sum_probs=100.2

Q ss_pred             ccc-eeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccC--CchHHH-HHHHHHHHHHHHHHHh--hhhHHHHH
Q 041759          100 ALT-IISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSL--GRKNLL-FLSCLTMSVATSLTIF--SNNLWIYS  173 (525)
Q Consensus       100 ~~~-i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~--Grk~~~-~~~~~~~~i~~~~~~~--~~~~~~l~  173 (525)
                      +|. +++++|.   +..+.++....+.++..++.++.|+++|| +  |||+.. .....+..++.++..+  ..+.+...
T Consensus       276 ~P~~l~~~~g~---s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  351 (452)
T PRK11273        276 SPTYLKEVKHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDM  351 (452)
T ss_pred             HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHH
Confidence            344 4455788   88889999999999999999999999999 8  555432 2222333333333222  23455555


Q ss_pred             HHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHH-HHHH-HHhccCCchHHHHHHHHHHHHHHH
Q 041759          174 LLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLT-LPAI-AYTNRSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       174 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l-~~~l-~~~~~~~~wr~~f~~~~~~~~~~~  248 (525)
                      +..++.|.+..........+..|.+|++.||++.++.+....+|..+ +|.+ +.+.+..||+..|++.++.+++..
T Consensus       352 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~  428 (452)
T PRK11273        352 ACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV  428 (452)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            55566665443323333345679999999999999999888887654 7776 677777899999998887777665

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.10  E-value=8.7e-10  Score=109.12  Aligned_cols=137  Identities=13%  Similarity=0.130  Sum_probs=116.4

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhhe
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIV  192 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  192 (525)
                      +....|.+.++..+...++.++.|++.|| +|||+.+.++.++.+++..+...+++.+.+++.+++.|++.+........
T Consensus       252 ~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  330 (396)
T TIGR00882       252 GTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFK  330 (396)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55677889999999999999999999999 99999999999999998888788899999999999999998766666666


Q ss_pred             eeEeeecCcchhhHHhH-HHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhH
Q 041759          193 LLTEKVGTEWRGLVGIL-DSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGL  250 (525)
Q Consensus       193 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~  250 (525)
                      ++.+..+++.++...+. .+....+|.++++.+ |.+.+..||+..|.+.++..++..++
T Consensus       331 ~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       331 YITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            77777787777776665 678889999999988 66667789999999998888777633

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.09  E-value=2.1e-09  Score=107.87  Aligned_cols=157  Identities=13%  Similarity=0.021  Sum_probs=114.9

Q ss_pred             hhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHH
Q 041759          343 GMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRI  422 (525)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (525)
                      ..|++.+ .|.+..+.+...+...+    +..++.++.|++.||+|||+.+..+.++.+++.++....+.. ..+.....
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~----~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~  122 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISI----AYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA-TSSIAIMF  122 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHH----HHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc-cchHHHHH
Confidence            3455444 58888888888887777    777899999999999999999999888888887766554321 01233444


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--c-cCchhHHHHHHHHHHHHHHH-H
Q 041759          423 GLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--G-SNNEFVSYGVFGLVIICCGF-F  498 (525)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~-~~~~~~~~~~~~~~~~~~~~-~  498 (525)
                      +..++.+++.+..++.....+.|.+|+++|++++++.+....+|+.++|.+.+.  . ..++...|++.+++.++..+ .
T Consensus       123 ~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~  202 (438)
T TIGR00712       123 VLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFA  202 (438)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            556667777777778788888999999999999999999999999888876652  2 23566777777776665443 3


Q ss_pred             HHhccCC
Q 041759          499 VICLPET  505 (525)
Q Consensus       499 ~~~~~~~  505 (525)
                      .++++|.
T Consensus       203 ~~~~~~~  209 (438)
T TIGR00712       203 FAMMRDT  209 (438)
T ss_pred             HHhccCC
Confidence            4445553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.09  E-value=4.2e-10  Score=110.59  Aligned_cols=156  Identities=12%  Similarity=0.039  Sum_probs=121.0

Q ss_pred             HHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchh
Q 041759          340 VYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKR  419 (525)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (525)
                      .....|.+.+++|.+..+.+.+.+...+    +..++.++.|+++||+|||+.+..+.++..++.++..+..+.     .
T Consensus        14 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~----~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~   84 (379)
T TIGR00881        14 FALAMPYLVEEIGLSKTDLGLLLSSFSI----AYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL-----W   84 (379)
T ss_pred             hhhhhHHHHHHhCCCHhHHHHHHHHHHH----HHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH-----H
Confidence            3444577777889998888888888777    777899999999999999999999999998888887776543     4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHH-HHhh--ccCchhHHHHHHHHHHHHHH
Q 041759          420 MRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSV-LVAA--GSNNEFVSYGVFGLVIICCG  496 (525)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~-i~~~--~~~~~~~~~~~~~~~~~~~~  496 (525)
                      ..++..++.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|. +.+.  ...++...+.+.+++.++..
T Consensus        85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (379)
T TIGR00881        85 VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVS  164 (379)
T ss_pred             HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            56667777788888888899999999999999999999999999999999994 4432  23345566766666555544


Q ss_pred             HH-HHhccC
Q 041759          497 FF-VICLPE  504 (525)
Q Consensus       497 ~~-~~~~~~  504 (525)
                      ++ .++.++
T Consensus       165 ~~~~~~~~~  173 (379)
T TIGR00881       165 LICFLLLRD  173 (379)
T ss_pred             HHHheeeCC
Confidence            33 334444

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.09  E-value=6.3e-09  Score=105.94  Aligned_cols=159  Identities=11%  Similarity=-0.047  Sum_probs=122.5

Q ss_pred             HHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccc
Q 041759          338 GVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAG  417 (525)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (525)
                      ......+|.+.+++|.+..+.....+...+    +...+.+..|+++||+|||+.+.++..+..++.++....++.    
T Consensus        23 tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l----~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~----   94 (495)
T PRK14995         23 TVLHVAAPTLSMTLGASGNELLWIIDIYSL----VMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTA----   94 (495)
T ss_pred             HHHHHHHHHHHHHhCCCHhHHHHHHHHHHH----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCH----
Confidence            455566788888888888777777776666    666788899999999999999999999999998888776544    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhcccc-CcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHH
Q 041759          418 KRMRIGLELASLFSAYIAYTVIFIYAIELF-PTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIIC  494 (525)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~  494 (525)
                       ...++.-++.+++.+...+.....+.+.+ |+++|+++.|+......+|..++|.+.+.  ...++.+.|++...+.++
T Consensus        95 -~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~  173 (495)
T PRK14995         95 -SWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLV  173 (495)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Confidence             45666777888888887777777666655 77899999999999999999999999985  334567777776655555


Q ss_pred             HHHH-HHhccCC
Q 041759          495 CGFF-VICLPET  505 (525)
Q Consensus       495 ~~~~-~~~~~~~  505 (525)
                      ..++ .+++|+.
T Consensus       174 ~~~l~~~~l~~~  185 (495)
T PRK14995        174 VMGLTARYVPRQ  185 (495)
T ss_pred             HHHHHHHhCCCC
Confidence            5443 3445554

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.08  E-value=5.4e-09  Score=103.88  Aligned_cols=155  Identities=15%  Similarity=0.053  Sum_probs=117.3

Q ss_pred             hhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHH
Q 041759          343 GMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRI  422 (525)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (525)
                      .++.+.++++.+....+...+...+    +..++.++.|+++||+|||+.+.++..+..++.+......+.     ...+
T Consensus        35 ~~~~~~~~~~~s~~~~~~~~~~~~~----~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~~l~  105 (406)
T PRK15402         35 GMLAVVEDFNAGAEWVPTSMTAYLA----GGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSI-----EQFT  105 (406)
T ss_pred             chHHHHHHhCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccH-----HHHH
Confidence            3455667788888888777777777    777899999999999999999999988888887776665433     3555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHH-
Q 041759          423 GLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFV-  499 (525)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~-  499 (525)
                      +..++.+.+.+...+.......|.+|++.|.+..++......++..++|.+.+.  ...++...+.+.+++.++..+.. 
T Consensus       106 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK15402        106 LLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLW  185 (406)
T ss_pred             HHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence            666777777777777888889999999999999998888888888899988774  33456677777776666555433 


Q ss_pred             HhccCCC
Q 041759          500 ICLPETR  506 (525)
Q Consensus       500 ~~~~~~~  506 (525)
                      +..||++
T Consensus       186 ~~~~~~~  192 (406)
T PRK15402        186 RAMPETA  192 (406)
T ss_pred             HhCCCCC
Confidence            4456554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.07  E-value=1.4e-08  Score=99.88  Aligned_cols=115  Identities=15%  Similarity=0.028  Sum_probs=90.4

Q ss_pred             ccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 041759          350 NLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASL  429 (525)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (525)
                      +++++..+.+.+.++..+    +..++++..|++.||+|.|+++.++.++..+..+...+......+++...++..++.+
T Consensus        64 ~~~ls~~q~g~l~ai~~l----~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~G  139 (462)
T PRK15034         64 GFNFTTDQLFLLTALPSV----SGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCG  139 (462)
T ss_pred             hcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHH
Confidence            688998888888887777    6667888889999999999999999999888888777652111123456777777777


Q ss_pred             HHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHH
Q 041759          430 FSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIF  469 (525)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~  469 (525)
                      ++ +..++.....+++.+|+++||++.|+....+++|..+
T Consensus       140 ig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l  178 (462)
T PRK15034        140 FA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSV  178 (462)
T ss_pred             HH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHH
Confidence            76 6788888899999999999999999997666555543

>TIGR00898 2A0119 cation transport protein

Probab=99.07  E-value=1.4e-09  Score=111.33  Aligned_cols=135  Identities=19%  Similarity=0.118  Sum_probs=111.6

Q ss_pred             HHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHhhcccchhhhhheeeEeeec
Q 041759          122 ASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNL--WIYSLLRFFSGISRATIGTCTIVLLTEKVG  199 (525)
Q Consensus       122 s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~  199 (525)
                      ....+....+.++.+++.|| +|||+.+.++.++.+++.++..+.++.  +..++.-++.+++.+...+....+..|.+|
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            44556777888999999999 999999999999999988888776543  555666677777777788888999999999


Q ss_pred             CcchhhHHhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhHhheeecCCc
Q 041759          200 TEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESP  259 (525)
Q Consensus       200 ~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp  259 (525)
                      .+.|++++++.+....+|.+++|.+.. +...++..++++.++..++.. +..+++||+.
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~lpet~  498 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAG-ILTLFLPETK  498 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHH-HHHHcCcCCC
Confidence            999999999999999999999999866 555577788888888887776 5566788864

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.07  E-value=3e-09  Score=104.64  Aligned_cols=155  Identities=14%  Similarity=0.122  Sum_probs=122.3

Q ss_pred             hhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHH
Q 041759          342 YGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMR  421 (525)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (525)
                      -.+|.+.+++|.+..+.+...+...+    +..++.++.|++.||+|||+.+..+.++..++.++.....+.     ...
T Consensus        12 p~~~~~~~~~~~s~~~~~~~~~~~~~----~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~   82 (377)
T PRK11102         12 PALPVIAADFGVSAGSVQMTLSAYIL----GFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTI-----DQL   82 (377)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHH----HHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccH-----HHH
Confidence            34466677888998888888887777    777999999999999999999999999988888887765443     355


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHH-
Q 041759          422 IGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFF-  498 (525)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~-  498 (525)
                      .+..++.+++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.  ...++...+.+.+++.++..+. 
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            6667777888888888888999999999999999999999999999999998874  2235566777766666555443 


Q ss_pred             HHhccCC
Q 041759          499 VICLPET  505 (525)
Q Consensus       499 ~~~~~~~  505 (525)
                      .+.++|+
T Consensus       163 ~~~~~~~  169 (377)
T PRK11102        163 FFFIPET  169 (377)
T ss_pred             HHhCCcc
Confidence            3455654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.05  E-value=1.3e-08  Score=100.71  Aligned_cols=154  Identities=14%  Similarity=0.092  Sum_probs=116.9

Q ss_pred             hhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHH
Q 041759          344 MTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIG  423 (525)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (525)
                      +|.+.++++.+....+...+...+    +.+++.++.|+++||+|||+.+..+..+..++.++....++.     ...++
T Consensus        31 ~~~i~~~~~~s~~~~~~~~~~~~~----~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~  101 (394)
T PRK11652         31 IADMARDLNVREGAVQAVMAAYLL----TYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSL-----TVLIA  101 (394)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHH----HHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH-----HHHHH
Confidence            466778889998888888887777    777899999999999999999999988888887776654333     35566


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHH-HHH
Q 041759          424 LELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGF-FVI  500 (525)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~-~~~  500 (525)
                      ..++.+++.+...+....+..|.++.+.++.+.++.+....++..++|.+.+.  ...++...+.+.++..++..+ ..+
T Consensus       102 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  181 (394)
T PRK11652        102 ASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMAR  181 (394)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH
Confidence            66777777777677777888898998889999999888888899999988874  233566677766655544433 344


Q ss_pred             hccCCC
Q 041759          501 CLPETR  506 (525)
Q Consensus       501 ~~~~~~  506 (525)
                      +.||++
T Consensus       182 ~~~~~~  187 (394)
T PRK11652        182 WMPETR  187 (394)
T ss_pred             hCCccC
Confidence            556643

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.04  E-value=6.2e-09  Score=105.68  Aligned_cols=173  Identities=9%  Similarity=-0.044  Sum_probs=113.2

Q ss_pred             hhhcchh-HHHHHHHHHHHHHHHHHHHhhhhhc-ccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHh-hcChhH
Q 041759          316 ELFVRRW-ALERTLALMVPGFGIGVVYYGMTLG-IENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQK-WNRKSS  392 (525)
Q Consensus       316 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~-~g~~~~  392 (525)
                      +.+++|+ ++......+...++.......++.+ .+++|.+........+....    ......+++|++.|| +|||+.
T Consensus        15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~----~~~~~~~~~G~LaDr~~G~r~~   90 (500)
T PRK09584         15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSA----LVYGLVAIGGWLGDKVLGTKRV   90 (500)
T ss_pred             hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccchHHH
Confidence            4456664 3333333344444433333334444 46688887766655544333    222344688999999 599999


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcch--hhhhhHHHHHHHHHHHHHH
Q 041759          393 LLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCV--RNSATSIMRLAIIFAAIFS  470 (525)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~~~~~~~~~~g~~~~  470 (525)
                      +.++.++..++..++.+....    +....+...+.+++.+...+...++..|.+|++.  |..+.++.+...++|..++
T Consensus        91 ~~~g~~~~~ig~~l~~~~~~~----~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~g  166 (500)
T PRK09584         91 IMLGAIVLAIGYALVAWSGHD----AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFS  166 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHH
Confidence            999999998887777664332    2234445566677777777788889999998643  4467888888899999999


Q ss_pred             HHHHhh--ccCchhHHHHHHHHHHHHHH
Q 041759          471 SVLVAA--GSNNEFVSYGVFGLVIICCG  496 (525)
Q Consensus       471 p~i~~~--~~~~~~~~~~~~~~~~~~~~  496 (525)
                      |.+.++  ...++...|.+.++..+++.
T Consensus       167 p~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        167 MLATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            999985  33466777777665444443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.04  E-value=7.6e-09  Score=101.29  Aligned_cols=124  Identities=11%  Similarity=0.064  Sum_probs=96.1

Q ss_pred             hhhh-hcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhc-cccccchh
Q 041759          342 YGMT-LGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVAN-DISNAGKR  419 (525)
Q Consensus       342 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  419 (525)
                      ...| ++.+++|.+....+...+...+    +.+++.++.|++.||+|||+.+.++.++..++.++..+.. +.     .
T Consensus        22 ~~~~~~~~~~~~~s~~~~~~~~~~~~~----~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~-----~   92 (366)
T TIGR00886        22 PLAVQMIKDDLGLSTAQLGNLVAVPVL----AGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSY-----S   92 (366)
T ss_pred             HhhhHHHHHHhCCCHHHhhHhhHHHHH----HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhH-----H
Confidence            3345 3567789999888888888777    8889999999999999999999999999999888877765 33     3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 041759          420 MRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~  475 (525)
                      ..++..++.+++.+ .++....++.|.+|+++|+.+.++......+|..+++.+.+
T Consensus        93 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  147 (366)
T TIGR00886        93 VLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP  147 (366)
T ss_pred             HHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence            45555666666643 44566788999999999999999988777666666555543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.04  E-value=3.9e-09  Score=105.23  Aligned_cols=152  Identities=15%  Similarity=0.168  Sum_probs=130.7

Q ss_pred             cceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCch--HHHHHHHHHHHHHHHHHHh--------hhhHH
Q 041759          101 LTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRK--NLLFLSCLTMSVATSLTIF--------SNNLW  170 (525)
Q Consensus       101 ~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk--~~~~~~~~~~~i~~~~~~~--------~~~~~  170 (525)
                      ..-++++|+   +..+...+.-+..+...+|++++|++.|| +|.|  ++++++++++.+..+...+        .++-+
T Consensus       306 i~a~~~lg~---s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~  381 (477)
T PF11700_consen  306 IYATEVLGM---STTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPW  381 (477)
T ss_pred             HHHHHhcCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHH
Confidence            344568999   99999999999999999999999999999 9999  8999999888776666666        67888


Q ss_pred             HHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCC-chHHHHHHHHHHHHHHH
Q 041759          171 IYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSS-SWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       171 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~-~wr~~f~~~~~~~~~~~  248 (525)
                      .+.+.-++.|+..|...+...++.+|+.|+++.+..+|++....-....+||++ +.+.+.. +-|+.+....++.++.+
T Consensus       382 ~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl  461 (477)
T PF11700_consen  382 EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGL  461 (477)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998 5555433 58888888888887777


Q ss_pred             hHhheeecC
Q 041759          249 GLLYIFVSE  257 (525)
Q Consensus       249 ~~~~~~lpe  257 (525)
                       ++..+++.
T Consensus       462 -~ll~~v~~  469 (477)
T PF11700_consen  462 -ILLFFVDV  469 (477)
T ss_pred             -HHHhhccc
Confidence             44455554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.03  E-value=7.6e-08  Score=91.94  Aligned_cols=324  Identities=14%  Similarity=0.064  Sum_probs=174.1

Q ss_pred             hhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEe
Q 041759          117 KGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTE  196 (525)
Q Consensus       117 ~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  196 (525)
                      .+.+.-+-.+...+.-+.+.++.+| +..+.=+.+..++..++.++.++++|.+.=+++-++.+++.|........+.. 
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~-v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-  138 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHR-VPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-  138 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhh-ccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence            4555555666677777778888898 87665566677788889999999999999999999999999998888888754 


Q ss_pred             eecCcchhhHHhHHHHHHHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHH
Q 041759          197 KVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNR--SSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEV  274 (525)
Q Consensus       197 ~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~--~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~  274 (525)
                      .+++    ...+-+..+.+.+.++|+..-..+.  ..+-|..+++..++.++..+..++.+|.++..    ...++.   
T Consensus       139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~----~~~~~~---  207 (402)
T PF02487_consen  139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTN----RPYQES---  207 (402)
T ss_pred             hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcccccc----CCCccc---
Confidence            4543    3578888899999999887744333  33457788888877766663444455543210    000000   


Q ss_pred             HHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhc-chhHHHHHHHHHHHHHHHHHHHhhh--hhccccc
Q 041759          275 IKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFV-RRWALERTLALMVPGFGIGVVYYGM--TLGIENL  351 (525)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  351 (525)
                             +...+..++..+.+.+..+.+...+     ..+++-++ -+.+.+.++-.+..++.-.....++  ....+..
T Consensus       208 -------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~  275 (402)
T PF02487_consen  208 -------ESEDEAEDDLLESETSESKPDSSSK-----LSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNS  275 (402)
T ss_pred             -------CCCCcccccccccccccccccccch-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCcc
Confidence                   0000000000000000000000000     12222111 1111122222222333322222222  1111221


Q ss_pred             CChhH-HHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHH--HHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 041759          352 GFDIY-LGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLV--LFIISGICSIMAVVANDISNAGKRMRIGLELAS  428 (525)
Q Consensus       352 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (525)
                      ..+.. .........++        |.+++.--...+.-|++.+.  ...+..+.+++-.+....  .+.+..++.++..
T Consensus       276 ~~~~r~~Y~~Y~~~YQ~--------GVFISRSS~~~~rir~lwils~LQ~~nl~~~~l~s~~~fi--psi~ivf~lif~e  345 (402)
T PF02487_consen  276 FFSPRDQYRWYQLLYQL--------GVFISRSSLPFFRIRRLWILSLLQVINLVFLLLQSWYRFI--PSIWIVFVLIFYE  345 (402)
T ss_pred             CCCHHHHHHHHHHHHHH--------HHhhhhcceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHH
Confidence            22222 22222222232        22222211122222333222  222222222222222111  1234666778888


Q ss_pred             HHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 041759          429 LFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~  475 (525)
                      |+..|..+...+..+.|..|+++|..++|.......+|..++.++.-
T Consensus       346 GLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l  392 (402)
T PF02487_consen  346 GLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL  392 (402)
T ss_pred             HHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            88888888888888888899999999999999888888887776653

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.01  E-value=1.1e-08  Score=84.71  Aligned_cols=125  Identities=16%  Similarity=0.165  Sum_probs=98.1

Q ss_pred             cCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcch
Q 041759          372 STIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCV  451 (525)
Q Consensus       372 ~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  451 (525)
                      +.+++.++.+++.||+|||+.+..+.....++.+......+.     ....+..++.+++.+...+....+..|.+|++.
T Consensus        10 ~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880        10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNI-----TVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             HHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            566888999999999999999998888888777766554333     355666778888888888899999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhc--cCchhHHHHHHHHHHHHHHHHHHh
Q 041759          452 RNSATSIMRLAIIFAAIFSSVLVAAG--SNNEFVSYGVFGLVIICCGFFVIC  501 (525)
Q Consensus       452 r~~~~~~~~~~~~~g~~~~p~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  501 (525)
                      |+++.++.+....+|..++|.+.+..  ..++...+.+.+.+.++..+..++
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF  136 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998853  234556666666666655554433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.00  E-value=8.6e-09  Score=105.27  Aligned_cols=149  Identities=14%  Similarity=0.064  Sum_probs=110.4

Q ss_pred             ChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccc-cchhHHHHHHHHHHHH
Q 041759          353 FDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISN-AGKRMRIGLELASLFS  431 (525)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  431 (525)
                      .+....+.+.+...+    +.+++.++.+++.||+|||+.+.++.++..++.++......... .+....++.-++.+++
T Consensus        53 ~~~~~~~~~~~~~~i----g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  128 (502)
T TIGR00887        53 LPSSVSAAVNGSASI----GTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVG  128 (502)
T ss_pred             chHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHH
Confidence            344445566666666    78899999999999999999999998888888777666543200 0134677788888999


Q ss_pred             HHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh-----c--------------------cCchhHHHH
Q 041759          432 AYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA-----G--------------------SNNEFVSYG  486 (525)
Q Consensus       432 ~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~-----~--------------------~~~~~~~~~  486 (525)
                      .+..++....+..|.+|++.|+++.++.+....+|..+++.+...     .                    ..++...+.
T Consensus       129 ~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~  208 (502)
T TIGR00887       129 IGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIG  208 (502)
T ss_pred             HhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHH
Confidence            999999999999999999999999999999998988888776542     1                    113555555


Q ss_pred             HHHHHHHHHHHHHHhccCC
Q 041759          487 VFGLVIICCGFFVICLPET  505 (525)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~  505 (525)
                      +.++..++..+..+++||+
T Consensus       209 ~~~ip~~i~~~~~~~lpES  227 (502)
T TIGR00887       209 FGAVPALLALYFRLTIPET  227 (502)
T ss_pred             HHHHHHHHHHHHHHhCCCC
Confidence            5554555555555677876

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.00  E-value=3.3e-09  Score=107.50  Aligned_cols=152  Identities=16%  Similarity=0.219  Sum_probs=114.8

Q ss_pred             cceeeccccccchhhhhhhHHH-HHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHH
Q 041759          101 LTIISEWGLECSSAFIKGLPAA-SHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLT---IFS-NNLWIYSLL  175 (525)
Q Consensus       101 ~~i~~~~~~~~~s~~~~g~~~s-~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~  175 (525)
                      |.+.+++|.   +..+.+++.. ...++..++.++.|+++|| +|||+.+.++.++.+++.+..   +.. ++.+.+.+.
T Consensus       247 ~~l~~~~G~---s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~  322 (491)
T PRK11010        247 TFLIRGVGF---DAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAA  322 (491)
T ss_pred             HHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            344567899   9999999874 6678999999999999999 999998877666555544332   232 455555556


Q ss_pred             HHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhhee
Q 041759          176 RFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIF  254 (525)
Q Consensus       176 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  254 (525)
                      -++..+..|...+...++..+..+++.+++..++.+....+|..+++.+ |.+.+..||+..|.+.++.+++.. +....
T Consensus       323 ~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l-~~~~~  401 (491)
T PRK11010        323 VFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGL-LLLLV  401 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH-HHHHH
Confidence            6666655565566667778888899999999999999999998865555 777777899999999888888876 44444


Q ss_pred             ecC
Q 041759          255 VSE  257 (525)
Q Consensus       255 lpe  257 (525)
                      +++
T Consensus       402 ~~~  404 (491)
T PRK11010        402 CRQ  404 (491)
T ss_pred             HHh
Confidence            444

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.98  E-value=1.9e-08  Score=97.95  Aligned_cols=155  Identities=10%  Similarity=-0.009  Sum_probs=112.0

Q ss_pred             hhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHH
Q 041759          342 YGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMR  421 (525)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (525)
                      ..+|.+.++++.+..+.+.+.+...+    +..++.+..|++.||+|||+++.........+.. .......    +...
T Consensus        12 ~~lp~i~~~~~~s~~~~g~~~s~~~~----g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~~~~----~~~l   82 (368)
T TIGR00903        12 PVLSLVAEDIDVSKEELGLLAITYPA----AFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLDPFN----YEWL   82 (368)
T ss_pred             hhHHHHHHHhCcCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHHhcc----HHHH
Confidence            44577778889998888888887777    7779999999999999999876655444433322 2222122    4567


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHH-H
Q 041759          422 IGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGF-F  498 (525)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~-~  498 (525)
                      ++.-++.+++.+. .........|.+|+++|++++++.+....+|..++|.+.+.  ...++...|.+.+++.++..+ .
T Consensus        83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~  161 (368)
T TIGR00903        83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILV  161 (368)
T ss_pred             HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence            7777778888775 44555566899999999999999999999999999888774  344677777776776655544 4


Q ss_pred             HHhccCCC
Q 041759          499 VICLPETR  506 (525)
Q Consensus       499 ~~~~~~~~  506 (525)
                      .+++||..
T Consensus       162 ~~~lp~~p  169 (368)
T TIGR00903       162 LAALPALP  169 (368)
T ss_pred             HHHcCCCC
Confidence            45567643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.97  E-value=1.2e-08  Score=102.94  Aligned_cols=150  Identities=11%  Similarity=0.041  Sum_probs=107.3

Q ss_pred             hhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHh-hcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHH
Q 041759          345 TLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQK-WNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIG  423 (525)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (525)
                      .+..+++|.+......+.+....    ......+++|+++|| +|||+++.++.++..++.+.+.+....    ....++
T Consensus        39 ~yl~~~lg~~~~~a~~i~~~~~~----~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~----~~ll~~  110 (489)
T PRK10207         39 VFFVKQLGFSQEQAFITFGAFAA----LVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK----PDLIFI  110 (489)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHH----HHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc----hhHHHH
Confidence            33445688887777666655544    333566789999999 999999999999999998888775443    223445


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCcc--hhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHH
Q 041759          424 LELASLFSAYIAYTVIFIYAIELFPTC--VRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFV  499 (525)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~  499 (525)
                      ...+.+.+.+...+...+++.|.+|++  .|+.++++.+...++|..++|.+.++  ...++.+.|.+.++..+++.+.+
T Consensus       111 ~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~  190 (489)
T PRK10207        111 ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVY  190 (489)
T ss_pred             HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHH
Confidence            566667777778888889999999877  45778899999999999999988885  23356666766554444444333


Q ss_pred             Hhc
Q 041759          500 ICL  502 (525)
Q Consensus       500 ~~~  502 (525)
                      ...
T Consensus       191 ~~~  193 (489)
T PRK10207        191 FAC  193 (489)
T ss_pred             HHc
Confidence            333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.96  E-value=2.8e-08  Score=99.46  Aligned_cols=134  Identities=13%  Similarity=0.055  Sum_probs=98.4

Q ss_pred             cCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccc---cchhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 041759          372 STIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISN---AGKRMRIGLELASLFSAYIAYTVIFIYAIELFP  448 (525)
Q Consensus       372 ~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  448 (525)
                      +..+|.++.|++.||+|||+.+..+..+.+++.++..+.++...   ......+++-++.|++.+..++...+++.|.+|
T Consensus        75 ~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p  154 (432)
T PRK10406         75 MRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAV  154 (432)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCC
Confidence            66689999999999999999999999999999888877654300   011245667778888888899999999999999


Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHhh----------ccCchhHHHHHHHHHHHHHHHHHHhccCC
Q 041759          449 TCVRNSATSIMRLAIIFAAIFSSVLVAA----------GSNNEFVSYGVFGLVIICCGFFVICLPET  505 (525)
Q Consensus       449 ~~~r~~~~~~~~~~~~~g~~~~p~i~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (525)
                      +++|+...++.......|.++++.+...          ...++...|.+.++..++..++...++|.
T Consensus       155 ~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~  221 (432)
T PRK10406        155 EGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDET  221 (432)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999888877767776666654331          13466777776665555443333334443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.95  E-value=9.4e-09  Score=101.53  Aligned_cols=144  Identities=13%  Similarity=0.005  Sum_probs=109.0

Q ss_pred             cceeeccccccchhhhhhhHHHHHH-HHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHh------hhhHHHHH
Q 041759          101 LTIISEWGLECSSAFIKGLPAASHF-TGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIF------SNNLWIYS  173 (525)
Q Consensus       101 ~~i~~~~~~~~~s~~~~g~~~s~~~-lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~------~~~~~~l~  173 (525)
                      +.+.+|.|+   +..++|++..... .+..++.++.|++.|| +|+|+.+..+..+.++..+....      .++.+.+.
T Consensus       232 ~~~l~~~G~---s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (390)
T TIGR02718       232 KLYLVDAGW---PLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW  307 (390)
T ss_pred             hHHHHhcCC---CHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence            344456799   9999999988876 4667788999999999 99999998877766443333221      12334445


Q ss_pred             HHHHHHhhcccchhhhhheeeEeeecC-cchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHH
Q 041759          174 LLRFFSGISRATIGTCTIVLLTEKVGT-EWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       174 ~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~  248 (525)
                      ...++.+++.+...+...+.+.+..++ +++++.+++.+...++|..++|.+ +.+.+..||+..|++.+++.++..
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            555666777777777777776676765 889999999999999999999998 566666799999998887777655

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.94  E-value=7e-09  Score=105.02  Aligned_cols=145  Identities=13%  Similarity=0.028  Sum_probs=115.3

Q ss_pred             ccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 041759          350 NLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASL  429 (525)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (525)
                      +++.+....+.+.+...+    +.+++.++.|++.||+|+|+.+..+.++..++.++..+....   +....++.-++.|
T Consensus        70 ~~~~s~~~~g~~~s~~~~----~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r~~~G  142 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFY----GQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG---GIALVVFCRVIQG  142 (465)
T ss_pred             CCCCCHHHhhHHHHHHHH----HHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc---CchHHHHHHHHHH
Confidence            567777787877777777    777999999999999999999999988888777766543222   1345677778888


Q ss_pred             HHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--cc-CchhHHHHHHHHHHHHHHHHHHh
Q 041759          430 FSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GS-NNEFVSYGVFGLVIICCGFFVIC  501 (525)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~  501 (525)
                      ++.+..++....++.|.+|++.|+++.++......+|..++|.+.+.  .. .++...|.+.+++.++..++.+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~  217 (465)
T TIGR00894       143 LAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFV  217 (465)
T ss_pred             HhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHH
Confidence            99899999999999999999999999999999999999999998874  23 25677777777766655554444

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.94  E-value=5.1e-08  Score=94.45  Aligned_cols=154  Identities=14%  Similarity=0.081  Sum_probs=123.3

Q ss_pred             HhhhhhcccccCChhHH-HHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchh
Q 041759          341 YYGMTLGIENLGFDIYL-GVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKR  419 (525)
Q Consensus       341 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (525)
                      .+..|++.+++|++..+ .+.+.+....    +..+..+.+|++.||+|.|+++.++.+...+..++.++....     .
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~y----sYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl-----~  116 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPY----SHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSV-----W  116 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHH----HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence            34557777789999888 8888888888    788999999999999999999999999999999988886544     5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc-cCc---hhHHHHHHHHHHHHH
Q 041759          420 MRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG-SNN---EFVSYGVFGLVIICC  495 (525)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~-~~~---~~~~~~~~~~~~~~~  495 (525)
                      .+.+.-++.|++.+..+ ....++...+|++.|+++.|+.+....+|.++++.+.++. ..+   +.....+-.....++
T Consensus       117 ~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a  195 (511)
T TIGR00806       117 HMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFS  195 (511)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence            77888899999999998 9999999999999999999999999999999988887741 112   222223333344455


Q ss_pred             HHHHHhccC
Q 041759          496 GFFVICLPE  504 (525)
Q Consensus       496 ~~~~~~~~~  504 (525)
                      .++.+++|.
T Consensus       196 ~~~a~~LP~  204 (511)
T TIGR00806       196 VFLALFLKR  204 (511)
T ss_pred             HHHHHhCCC
Confidence            566677764

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.93  E-value=5.2e-09  Score=118.32  Aligned_cols=142  Identities=18%  Similarity=0.103  Sum_probs=121.2

Q ss_pred             ceeeccccccchhh-hhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 041759          102 TIISEWGLECSSAF-IKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSG  180 (525)
Q Consensus       102 ~i~~~~~~~~~s~~-~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G  180 (525)
                      .+.+++|+   +.. +.|++.+...++.++++++.|+++|| +++|+++.++.++.+++.++..+..+.+.++++.++.|
T Consensus       258 ~~~~~~g~---s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  333 (1146)
T PRK08633        258 YAKEVLGL---DNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFG  333 (1146)
T ss_pred             HHHHHhCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            44566888   888 99999999999999999999999999 99999999999989888888888889999999999999


Q ss_pred             hcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHH
Q 041759          181 ISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNR--SSSWTIIYLWTSIPTLVY  247 (525)
Q Consensus       181 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~--~~~wr~~f~~~~~~~~~~  247 (525)
                      ++.+...+...+++.+..|+++||+++++.+....+|.++++.++.++.  ..++...|++.+.+.++.
T Consensus       334 ~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  402 (1146)
T PRK08633        334 FSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIG  402 (1146)
T ss_pred             HHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            9999998999999999999999999999999999999988887765543  245666666655554443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.92  E-value=1e-08  Score=98.54  Aligned_cols=145  Identities=17%  Similarity=0.258  Sum_probs=124.4

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhhe
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIV  192 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  192 (525)
                      ++...|.+.+...+.-++...+..++.+| +|.|+.++++.++..+=.++++++++.+.+.+.+.+.|+-.+........
T Consensus       257 g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk  335 (412)
T PF01306_consen  257 GNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK  335 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67789999999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             eeEeeecCcchhhHHhH-HHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          193 LLTEKVGTEWRGLVGIL-DSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       193 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |+++.+|+|..++...+ .+.+.++|.++.+.+ |.+-+..|.+..|++.+.+.+...++..+.+++.
T Consensus       336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence            99999998887777766 467888888886666 7777888999999999998888776767666653

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.92  E-value=1e-08  Score=102.78  Aligned_cols=131  Identities=16%  Similarity=0.047  Sum_probs=92.2

Q ss_pred             ccce-eeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHH-H---HhhhhHHHHHH
Q 041759          100 ALTI-ISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSL-T---IFSNNLWIYSL  174 (525)
Q Consensus       100 ~~~i-~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~-~---~~~~~~~~l~~  174 (525)
                      .|.+ ++.+|+   +..+.++....+.++..++.++.|+++|| +|||++++.+.++..+..+. .   ...+++..+.+
T Consensus       261 ~p~~l~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
T PRK15075        261 TPTFGKTVLHL---SAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLA  336 (434)
T ss_pred             HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            3444 344788   88888999899999999999999999999 99999888765544332211 1   11234444555


Q ss_pred             HHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHH-HHHHHHHHHHHHH-HHhccCCchH
Q 041759          175 LRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDS-FFFTIGTLTLPAI-AYTNRSSSWT  234 (525)
Q Consensus       175 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~l~~~l-~~~~~~~~wr  234 (525)
                      ..++.|++.+...+....++.|.+|++.|+...++.. .+..++..++|.+ +.+.+..|++
T Consensus       337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            5566667776666666778899999999999999854 4444556667776 6666656653

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.91  E-value=5.8e-09  Score=96.15  Aligned_cols=115  Identities=14%  Similarity=0.108  Sum_probs=90.6

Q ss_pred             CChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Q 041759          352 GFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFS  431 (525)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (525)
                      +.+....+++.+.+.+    .+.+.+...|.++||+|||.++..|.+..+++.++.+...+.     ...+..-++.|..
T Consensus        64 ~~~~~yaGflGSsF~i----lQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F-----~afv~aR~l~Gi~  134 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSI----LQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF-----AAFVLARFLGGIF  134 (451)
T ss_pred             cccchhhhhHhhHHHH----HHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhc
Confidence            3345556666666666    777999999999999999999999999999977776665433     2233334555554


Q ss_pred             HHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          432 AYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       432 ~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      .+ ..++..++++|++++++|+.+++...+...+|.++||.+.|+
T Consensus       135 kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgy  178 (451)
T KOG2615|consen  135 KG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGY  178 (451)
T ss_pred             cC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhH
Confidence            43 347888999999999999999999999999999999999995

>PRK10133 L-fucose transporter; Provisional

Probab=98.91  E-value=7.9e-08  Score=96.09  Aligned_cols=132  Identities=9%  Similarity=-0.016  Sum_probs=106.5

Q ss_pred             HHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccc
Q 041759          338 GVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAG  417 (525)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (525)
                      .......|.+.++++.+..+.+...+...+    +..++.++.|++.||+|||+++..+..+..++.++.......  .+
T Consensus        43 ~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~----g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a--~~  116 (438)
T PRK10133         43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYF----GYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--MN  116 (438)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc--CC
Confidence            445556677777899999999888888777    888999999999999999999999999999988775322111  12


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 041759          418 KRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~  475 (525)
                      +...++..++.+++.+...+....++.+..|++.|+..+++.+....+|..++|.+.+
T Consensus       117 ~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133        117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888889999998888888888877776666788999998999999888765

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.90  E-value=9.4e-09  Score=92.26  Aligned_cols=154  Identities=19%  Similarity=0.258  Sum_probs=119.6

Q ss_pred             cccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh-------hhHHH
Q 041759           99 TALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS-------NNLWI  171 (525)
Q Consensus        99 ~~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~-------~~~~~  171 (525)
                      |-|++++.+|+   ++.|...+.+.-.+|..+| ++.|.+.|+ +|+|.++.+|.+...+|..+...+       .++|.
T Consensus        24 yS~~Lk~~l~~---sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~   98 (250)
T PF06813_consen   24 YSPQLKSRLGY---SQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWL   98 (250)
T ss_pred             hhHHHHHHhCC---CHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHH
Confidence            37899999999   9999999999999999875 889999999 999999999999999998887654       46788


Q ss_pred             HHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhH
Q 041759          172 YSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGL  250 (525)
Q Consensus       172 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~  250 (525)
                      +.+..++.|.+.+.....+.....+.+| ++||.+.++.-...+++..+-..+ ..+..+..-+..+.....+.++.+ +
T Consensus        99 ~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l-~  176 (250)
T PF06813_consen   99 MCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCL-V  176 (250)
T ss_pred             HHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-H
Confidence            8888899988877666666666667787 579999999999999998886665 445554334444444444444444 5


Q ss_pred             hheeecCCc
Q 041759          251 LYIFVSESP  259 (525)
Q Consensus       251 ~~~~lpesp  259 (525)
                      ...+++..|
T Consensus       177 ~~~~vr~~~  185 (250)
T PF06813_consen  177 AMFFVRPVP  185 (250)
T ss_pred             HhhheeccC
Confidence            555555443

>TIGR01272 gluP glucose/galactose transporter

Probab=98.90  E-value=2.6e-08  Score=94.49  Aligned_cols=133  Identities=9%  Similarity=0.078  Sum_probs=105.4

Q ss_pred             ccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccc
Q 041759          106 EWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRAT  185 (525)
Q Consensus       106 ~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~  185 (525)
                      .+|+   ++.+.++..+.+..+..+|.++.+++.|| +|+|+++.++..+..++.++....++... ..+-++.|++.+.
T Consensus       172 ~~g~---s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~  246 (310)
T TIGR01272       172 ALGL---PEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSI  246 (310)
T ss_pred             cCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHH
Confidence            4688   89999999999999999999999999999 99999998888888887766666554433 3455688999999


Q ss_pred             hhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHH
Q 041759          186 IGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTL  245 (525)
Q Consensus       186 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~  245 (525)
                      .+|...+...+..|++ .+.+.++. ....+|.++.|.+ |.+.+..|.+..|++..+..+
T Consensus       247 i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~~  305 (310)
T TIGR01272       247 MFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCYL  305 (310)
T ss_pred             HHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            9999998888877654 45666665 4566888888875 777787888888875544433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.90  E-value=7e-10  Score=105.02  Aligned_cols=174  Identities=11%  Similarity=0.023  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccc----ccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHH
Q 041759          326 RTLALMVPGFGIGVVYYGMTLGIE----NLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISG  401 (525)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~  401 (525)
                      ..++.++......+--|.++-..+    .++.+....+++.....+    ...+++++.|++.||++|++++.+|..+-.
T Consensus        34 ~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v----~~~i~sPl~gyLadryNR~~v~~vG~~iW~  109 (493)
T KOG1330|consen   34 TLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIV----VFMIASPLFGYLADRYNRKRVIAVGIFIWT  109 (493)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHH----HHHHHHHHHHHHHhhcCcceEEeeHHHHHH
Confidence            344444444444333344433332    256666666666666666    666999999999999999999999999999


Q ss_pred             HHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh---cc
Q 041759          402 ICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA---GS  478 (525)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~---~~  478 (525)
                      ++.+...+....     +...++-.+.|.+.....|+..++++|.+|.++|++++++.+....+|..+|-.....   ..
T Consensus       110 ~Av~~~~fs~~F-----wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~  184 (493)
T KOG1330|consen  110 LAVFASGFSNHF-----WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT  184 (493)
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence            999988887444     5778888899999999999999999999999999999999999988777665444432   22


Q ss_pred             CchhHHHHHHHHHHHHHHHHH-HhccCCCCC
Q 041759          479 NNEFVSYGVFGLVIICCGFFV-ICLPETRGS  508 (525)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  508 (525)
                      .++.+.|...+++.++..++. ++.+|.+++
T Consensus       185 ~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg  215 (493)
T KOG1330|consen  185 FWWRWAFRGSAVLGVIVGLLVFLFVREPERG  215 (493)
T ss_pred             cceEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence            336778888888877776654 444555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.90  E-value=1.2e-07  Score=93.97  Aligned_cols=164  Identities=15%  Similarity=0.091  Sum_probs=118.8

Q ss_pred             HHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhh-----cChh-HHHHHHHHHHHHHHHHH
Q 041759          335 FGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKW-----NRKS-SLLVLFIISGICSIMAV  408 (525)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-----g~~~-~~~~~~~~~~~~~~~~~  408 (525)
                      ...++....+|.++++.|.+..+.+.+..+...      .+..++.|+++||+     |||+ .+.++..+.+++...+.
T Consensus        13 ~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~------~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~   86 (402)
T PRK11902         13 LPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA------YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA   86 (402)
T ss_pred             hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH
Confidence            344566677899999999999988877544332      27889999999999     7765 67777888877777766


Q ss_pred             HhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh-cc--CchhHHH
Q 041759          409 VANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA-GS--NNEFVSY  485 (525)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~-~~--~~~~~~~  485 (525)
                      +....  .+.+...+..++.+++.....+...+++.|..|+++|+++.++......+|.++++.+.+. ..  .++...|
T Consensus        87 ~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f  164 (402)
T PRK11902         87 FCPPH--AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTY  164 (402)
T ss_pred             hcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHH
Confidence            65332  1233445454555666777778889999999999999999999998888898888877663 22  2567778


Q ss_pred             HHHHHHHHHHHHHHHhccCCC
Q 041759          486 GVFGLVIICCGFFVICLPETR  506 (525)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~  506 (525)
                      .+.+++.++..+..+..+|++
T Consensus       165 ~i~a~~~l~~~l~~~~~~e~~  185 (402)
T PRK11902        165 LLMAGLMLAGALTTLWAPEPE  185 (402)
T ss_pred             HHHHHHHHHHHHHHHhcCCCc
Confidence            777776666555555566543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.88  E-value=7.3e-09  Score=103.91  Aligned_cols=152  Identities=20%  Similarity=0.221  Sum_probs=135.0

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCC--chHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLG--RKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRF  177 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~G--rk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~  177 (525)
                      +|...++.+.   ++.+.+.+.++..+.-.++.++.|+++|+ ..  ++.+..+++++.+++.+.+++.++++.++..-+
T Consensus       321 l~~~~~~~g~---~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~  396 (509)
T KOG2504|consen  321 LPSYAKSLGL---SSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSI  396 (509)
T ss_pred             HHHHHhhcCC---ChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            8888999999   99999999999999999999999999999 77  455677888888999999999999999999999


Q ss_pred             HHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCc-hHHHHHHHHHHHHHHHhHhheee
Q 041759          178 FSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSS-WTIIYLWTSIPTLVYSGLLYIFV  255 (525)
Q Consensus       178 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~l  255 (525)
                      +.|+..|.........+.|+.+.++-..+.|+...+.+++.++||.+ +.+.+..+ |...|+..++..++.. ..++..
T Consensus       397 ~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~-~~~~~~  475 (509)
T KOG2504|consen  397 LFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSA-VLLLIL  475 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHH-HHHHHh
Confidence            99999999888888899999999999999999999999999999988 54444444 9999999999888887 566555


Q ss_pred             c
Q 041759          256 S  256 (525)
Q Consensus       256 p  256 (525)
                      |
T Consensus       476 ~  476 (509)
T KOG2504|consen  476 R  476 (509)
T ss_pred             H
Confidence            5

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.87  E-value=1.9e-08  Score=94.62  Aligned_cols=150  Identities=19%  Similarity=0.143  Sum_probs=131.3

Q ss_pred             eeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcc
Q 041759          104 ISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISR  183 (525)
Q Consensus       104 ~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~  183 (525)
                      +.++|+   +..+..++.....+.+++|++++|+|.|| +|.|+++.+++++..+.++...+...-..+.+.-.+.|...
T Consensus       280 ~~~~gl---s~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~  355 (438)
T COG2270         280 AADLGL---SSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSL  355 (438)
T ss_pred             HHHcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Confidence            348999   99999999999999999999999999999 99999999999999999998888877777888889999999


Q ss_pred             cchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhcc-CCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          184 ATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNR-SSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       184 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~-~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      |..+..+-+|..+..|+++-++.+++++...-.+..+||.+ +.+.. ..+-|.-+....++.++.+ +....+|+.
T Consensus       356 G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl-~~L~~v~~~  431 (438)
T COG2270         356 GGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL-LLLLRVKVP  431 (438)
T ss_pred             chHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH-hhEEeecCC
Confidence            99999999999999999999999999999999999999988 54432 3467777777777766666 666666653

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.86  E-value=2.8e-08  Score=97.44  Aligned_cols=155  Identities=19%  Similarity=0.161  Sum_probs=115.3

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh---hhHH------
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS---NNLW------  170 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~---~~~~------  170 (525)
                      ...+-++-|+   +..+..+......+...++.+++..+.|| +|||+.++++..+..+..+++...   .+..      
T Consensus       293 st~i~~~aG~---~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y  368 (485)
T KOG0569|consen  293 STSIFKTAGF---TPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSY  368 (485)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4567777888   88899999999999999999999999999 999999999999998888776653   1111      


Q ss_pred             HHHHHHHHHhhcccc-hhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHH
Q 041759          171 IYSLLRFFSGISRAT-IGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       171 ~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~  248 (525)
                      ..+++.++..++.+. .-|...-+.+|.+|++.|..++++.....-+..++-... -.+-...|- +.|++..+++++..
T Consensus       369 ~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~  447 (485)
T KOG0569|consen  369 LCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFL  447 (485)
T ss_pred             HHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHH
Confidence            123333333333322 356777788999999999999998888777777654433 222222233 77888888888888


Q ss_pred             hHhheeecCCc
Q 041759          249 GLLYIFVSESP  259 (525)
Q Consensus       249 ~~~~~~lpesp  259 (525)
                      +..++.+|||.
T Consensus       448 i~~~~~lPETk  458 (485)
T KOG0569|consen  448 IYLYRYLPETK  458 (485)
T ss_pred             HHHHHhCcccC
Confidence            78999999984

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.86  E-value=8.4e-08  Score=84.04  Aligned_cols=347  Identities=13%  Similarity=0.094  Sum_probs=179.9

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      .-.+.+.++.   .+.++|.+.-...-...+...+.|-++|+ -|||+.-+.-++.++++++ +-.++.|-.++++|++-
T Consensus        60 vYyLYstYgF---gkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LG  134 (454)
T KOG4332|consen   60 VYYLYSTYGF---GKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLG  134 (454)
T ss_pred             eeeeehhcCc---cCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHHHHHHHH-hhcCCceEEEeehhhhh
Confidence            4456677888   88888888887777788888899999999 9999965544444444332 33467888999999999


Q ss_pred             hhcccchhhhhhee-eEeeecCcchhhHHhHHH--------HHHHHHHHHHHHHHHhc-c--CCchHHHHHHHHHHHHHH
Q 041759          180 GISRATIGTCTIVL-LTEKVGTEWRGLVGILDS--------FFFTIGTLTLPAIAYTN-R--SSSWTIIYLWTSIPTLVY  247 (525)
Q Consensus       180 G~~~~~~~~~~~~~-i~~~~~~~~r~~~~~~~~--------~~~~~G~~l~~~l~~~~-~--~~~wr~~f~~~~~~~~~~  247 (525)
                      |++.+..+....++ +.|.-+  +|+.-.-+..        .+..+-.+++.+.+-.+ +  ..|--.+|-..+.+..+.
T Consensus       135 GiaTsLLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaig  212 (454)
T KOG4332|consen  135 GIATSLLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIG  212 (454)
T ss_pred             hHHHHHHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence            99999888887775 455442  2332221211        12222222333332222 1  234445554444433333


Q ss_pred             HhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHH
Q 041759          248 SGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERT  327 (525)
Q Consensus       248 ~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (525)
                      ..+..-      .|-..-+++.+.++.+++. +                               ...+.+..+++   ..
T Consensus       213 mAvil~------~W~ENygdps~~kdlltqf-~-------------------------------gaa~aiaSD~k---i~  251 (454)
T KOG4332|consen  213 MAVILS------SWSENYGDPSENKDLLTQF-K-------------------------------GAARAIASDEK---IA  251 (454)
T ss_pred             HHHHHh------hhhhccCChhhhHHHHHHh-h-------------------------------HhHHHHhcchH---HH
Confidence            212211      1222223333333333332 1                               23344455543   22


Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccCChhHH--HHHHHHHhcccccccCchhHHHHHHHHHhhcCh--hHHHHHHHHHHHH
Q 041759          328 LALMVPGFGIGVVYYGMTLGIENLGFDIYL--GVVFNALLEIPNLASTIPSFFLTFFLIQKWNRK--SSLLVLFIISGIC  403 (525)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~--~~~~~~~~~~~~~  403 (525)
                      +...+-...-+..+...-.|.+.+..++..  -+++.+-..+    ++++|+-+..++..|-..|  ..+.+.+.+....
T Consensus       252 LLG~iqsLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMl----ASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~  327 (454)
T KOG4332|consen  252 LLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFML----ASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAA  327 (454)
T ss_pred             HHHHHHHHHhhhhheeeeeecccCCCCcccCCchhHHHHHHH----HHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHH
Confidence            333333333333333333344433322111  2333333333    3445655555555443322  3344444444443


Q ss_pred             HHHHHHhc--cccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhcc--C
Q 041759          404 SIMAVVAN--DISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGS--N  479 (525)
Q Consensus       404 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~~--~  479 (525)
                      +.+.....  ...+.+....++..+++-.+.+..||...-+-.+..|.+.|++.+-+...--++-.-++-+......  .
T Consensus       328 l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~  407 (454)
T KOG4332|consen  328 LLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPT  407 (454)
T ss_pred             HHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCcc
Confidence            33332221  2212334445666777778889999999999999999999988776554433222222222211111  1


Q ss_pred             chhHHHHHHHHHHHHHHHH
Q 041759          480 NEFVSYGVFGLVIICCGFF  498 (525)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~  498 (525)
                      +....|.++.+...++.+.
T Consensus       408 ~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  408 TTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             ccchhhhhhHHHHHHHHHH
Confidence            2345666666666655443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.85  E-value=1.4e-08  Score=93.18  Aligned_cols=129  Identities=18%  Similarity=0.114  Sum_probs=97.0

Q ss_pred             HHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecCcchh
Q 041759          125 FTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRG  204 (525)
Q Consensus       125 ~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~  204 (525)
                      .+.-.-|.++.+++.|| +|||+.|-...+++++..++.....+-....+.-+..-+...+.+.+.+.|..|.+|.+-|+
T Consensus       391 slaefPGlLIt~~iver-lGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa  469 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVER-LGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA  469 (528)
T ss_pred             HHhhCCchhHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence            34556677899999999 99999999999999999998877654333333333333334445667889999999999999


Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhHhheeec
Q 041759          205 LVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVS  256 (525)
Q Consensus       205 ~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lp  256 (525)
                      ...|.-+...-+|.++.|+++... +..-..+..+.+..+++.. +...++|
T Consensus       470 tgvGtcSsmaRIggI~~p~iA~~~-e~s~sl~i~vy~~~~ilag-IavcffP  519 (528)
T KOG0253|consen  470 TGVGTCSSMARIGGIFSPVIAMRA-ELSTSLPIFVYGALFILAG-IAVCFFP  519 (528)
T ss_pred             cchhhhhhHHhhhhhhhhHHHHHh-ccceeehHHHHHHHHHHHH-HHheeee
Confidence            999999999999999999998433 3344455566666666666 5556666

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.85  E-value=2.3e-06  Score=83.56  Aligned_cols=336  Identities=13%  Similarity=0.056  Sum_probs=177.7

Q ss_pred             hhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHH------hh--h-----h--HHHHHHHHHHHhhc
Q 041759          118 GLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTI------FS--N-----N--LWIYSLLRFFSGIS  182 (525)
Q Consensus       118 g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~------~~--~-----~--~~~l~~~r~l~G~~  182 (525)
                      +...-.-.+...+.++..|.+.|| ..|++++..+++..-++..+.+      +.  .     +  ...+++.-.+.|.-
T Consensus        41 siygl~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i  119 (432)
T PF06963_consen   41 SIYGLVRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAI  119 (432)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHH
Confidence            333444455667778889999999 9999988877765433322221      11  1     1  11222222222222


Q ss_pred             ccch-hhhhheeeEeeec------CcchhhHHhHHHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhhee
Q 041759          183 RATI-GTCTIVLLTEKVG------TEWRGLVGILDSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIF  254 (525)
Q Consensus       183 ~~~~-~~~~~~~i~~~~~------~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  254 (525)
                      .-.. .....+.=.||..      ++.+.+..+...-.=.+-.+++|++ |.+....+.+....+.+...++..++=+++
T Consensus       120 ~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~  199 (432)
T PF06963_consen  120 ERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL  199 (432)
T ss_pred             HHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2211 1222222345542      3344455555555556678889988 666666788888877777777766443433


Q ss_pred             ec----CCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcc--cc--cccccchhhhhhhhcchhHHHH
Q 041759          255 VS----ESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPA--AS--SKESSFLSSIRELFVRRWALER  326 (525)
Q Consensus       255 lp----esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~  326 (525)
                      +.    ..|. +..+++.++.            +.+.+++  +..++.++..  ++  +.-.+....++..+++|.+...
T Consensus       200 l~~VY~~~P~-L~~~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas  264 (432)
T PF06963_consen  200 LARVYNSVPA-LAVKKRSSES------------ESSSDEE--SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLAS  264 (432)
T ss_pred             HHHHHHhChH-hcCCCCCccc------------ccccccc--ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHH
Confidence            32    1121 0000000000            0000000  0000000000  00  0000011345566666654443


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHH
Q 041759          327 TLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIM  406 (525)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~  406 (525)
                      +-..++.....++ ...+.-|+...|++....+..-++..+    .++.|+++..++.+|+|..+.-.++...-..++.+
T Consensus       265 ~alalLY~TVLsf-~~lmt~yl~~~G~s~~~igi~R~~gav----~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~  339 (432)
T PF06963_consen  265 FALALLYFTVLSF-GGLMTAYLKSQGYSPSVIGIFRGLGAV----FGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLAL  339 (432)
T ss_pred             HHHHHHHHHHhcC-cHHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence            3333333222222 222233455559998888888777777    77799999999999999888777776654433332


Q ss_pred             HH---Hhcccc--ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHH
Q 041759          407 AV---VANDIS--NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLV  474 (525)
Q Consensus       407 ~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~  474 (525)
                      ..   +.+..+  ..+...++....+..+|.=..--...-+..|..|+++||+..|+-+...++...+.-.+.
T Consensus       340 ~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  340 CVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT  412 (432)
T ss_pred             HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            22   222220  112223444445555555455556777889999999999999999998887776655444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.84  E-value=1.4e-08  Score=105.61  Aligned_cols=131  Identities=12%  Similarity=0.074  Sum_probs=107.6

Q ss_pred             hhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccc--------
Q 041759          342 YGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDI--------  413 (525)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------  413 (525)
                      ..++.+.++++.+..+.+.+.+...+    +.+++.++.+++.||.+||+++.++.++.+++.++..+....        
T Consensus        54 ~~l~~iek~F~lss~~~G~i~s~~~i----~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~  129 (633)
T TIGR00805        54 SSLTTIERRFKLSTSSSGLINGSYEI----GNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYST  129 (633)
T ss_pred             hhchhhhhhhCCCCCcceeeeehhhH----HHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccc
Confidence            34466667788888888888888777    888999999999999999999999999999998887654200        


Q ss_pred             ------------------c--------------------ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhh
Q 041759          414 ------------------S--------------------NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSA  455 (525)
Q Consensus       414 ------------------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~  455 (525)
                                        .                    ...+..+++.-++.|++.+..++...+++.|.+|++.|+..
T Consensus       130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~  209 (633)
T TIGR00805       130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLY  209 (633)
T ss_pred             cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHH
Confidence                              0                    01234566778888888888889999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh
Q 041759          456 TSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       456 ~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      .++.+....+|..+++++.+.
T Consensus       210 ~~i~~~~~~iG~~lG~llgg~  230 (633)
T TIGR00805       210 IGILESIAVFGPAFGYLLGSF  230 (633)
T ss_pred             HHHHHHHHHhhhHHHHHHHHH
Confidence            999999999999999888773

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.84  E-value=1.8e-07  Score=94.76  Aligned_cols=115  Identities=10%  Similarity=0.119  Sum_probs=91.7

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhcccchh
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIF-----SNNLWIYSLLRFFSGISRATIG  187 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~  187 (525)
                      +....+++.+...++..++.+++++++|| +|+|+.+.++.++..++.+...+     .++.+.+++.-++.|++.+...
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~  342 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFW  342 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHH
Confidence            44566777777778999999999999999 99999999888877766655432     3456777778889999999999


Q ss_pred             hhhheeeEeeec-------CcchhhHHhHHHHHHHHHHHHHHHH-HHhc
Q 041759          188 TCTIVLLTEKVG-------TEWRGLVGILDSFFFTIGTLTLPAI-AYTN  228 (525)
Q Consensus       188 ~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~  228 (525)
                      +...++++|..+       +++.|..++......-+|..+++.+ +.++
T Consensus       343 ~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        343 VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999865       3445668899999999999998877 4444

>PRK09848 glucuronide transporter; Provisional

Probab=98.84  E-value=1.3e-07  Score=95.26  Aligned_cols=121  Identities=17%  Similarity=0.147  Sum_probs=98.0

Q ss_pred             eeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhh
Q 041759          104 ISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN--NLWIYSLLRFFSGI  181 (525)
Q Consensus       104 ~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~  181 (525)
                      ++.+|.   ++...++......++..++.++.+++.|| +|+|+++.++.++.+++.++..+.+  +++.+++..++.|+
T Consensus       256 ~~~~g~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~  331 (448)
T PRK09848        256 RYVLND---TGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASI  331 (448)
T ss_pred             eeecCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence            445666   66555555555577888899999999999 9999999999999888887777653  67777788889999


Q ss_pred             cccchhhhhheeeEeeecCc-------chhhHHhHHHHHHHHHHHHHHHH-HHhc
Q 041759          182 SRATIGTCTIVLLTEKVGTE-------WRGLVGILDSFFFTIGTLTLPAI-AYTN  228 (525)
Q Consensus       182 ~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~l~~~l-~~~~  228 (525)
                      |.+...+...++.+|..+.+       ++|...+..+....+|..+|+.+ +.++
T Consensus       332 G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        332 GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988887643       45888999999999999998877 4443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.84  E-value=2.8e-05  Score=76.96  Aligned_cols=272  Identities=11%  Similarity=0.091  Sum_probs=154.6

Q ss_pred             ccceeeccccccc--hhhhhhhHHHHHHHHHHHh-HHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh----h-----
Q 041759          100 ALTIISEWGLECS--SAFIKGLPAASHFTGCLLG-IVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS----N-----  167 (525)
Q Consensus       100 ~~~i~~~~~~~~~--s~~~~g~~~s~~~lg~~~~-~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~----~-----  167 (525)
                      +-++++.+.+...  +...+.++-+...+..++. .++.+++++| ++|++++-+....+....++.++.    +     
T Consensus        26 LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p  104 (472)
T TIGR00769        26 LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP  104 (472)
T ss_pred             HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence            4455666655211  3457888888888877777 8899999999 999999888777777666665554    1     


Q ss_pred             ----------------------hHHHHHHHHHHHhhcccchhh-hhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH
Q 041759          168 ----------------------NLWIYSLLRFFSGISRATIGT-CTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI  224 (525)
Q Consensus       168 ----------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l  224 (525)
                                            +.|...+..+...+-...... ....+..|.++.++-.|..+++..+.++|.++++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~  184 (472)
T TIGR00769       105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT  184 (472)
T ss_pred             cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  133444445555555555554 677889999999999999999999999999999877


Q ss_pred             -HHhc--------cCCchH----HHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhh
Q 041759          225 -AYTN--------RSSSWT----IIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSL  291 (525)
Q Consensus       225 -~~~~--------~~~~wr----~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (525)
                       .++.        ....|.    ..+.+.++..++.. .+..++.+..     .                .++...+.+ 
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~-~~~~~l~~~~-----~----------------~~~~~~~~~-  241 (472)
T TIGR00769       185 IKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAII-LLYWWVNRNV-----L----------------TDPRSYNPA-  241 (472)
T ss_pred             HHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcc-----c----------------CCccccchh-
Confidence             4433        112342    23344444444333 3332221100     0                000000000 


Q ss_pred             hhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccc
Q 041759          292 VSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLA  371 (525)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (525)
                             ++.++++++.+...+++.++++|.++...+...+.....+..++..--...+...++..-....+-......+
T Consensus       242 -------~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi  314 (472)
T TIGR00769       242 -------LKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGV  314 (472)
T ss_pred             -------hccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence                   0001111123334678889999987766666666666666555443322323222222211111111111111


Q ss_pred             cCchhHHHHHHHHHhhcChhHHHHHHHHHHH
Q 041759          372 STIPSFFLTFFLIQKWNRKSSLLVLFIISGI  402 (525)
Q Consensus       372 ~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~  402 (525)
                      ..++..++.+++.+|+|-+....+.-++..+
T Consensus       315 ~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       315 VSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3335566668999999987666554444433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.82  E-value=2e-08  Score=113.19  Aligned_cols=142  Identities=13%  Similarity=0.028  Sum_probs=115.2

Q ss_pred             eeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh----------------
Q 041759          103 IISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS----------------  166 (525)
Q Consensus       103 i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~----------------  166 (525)
                      +++.+|.   +..+.|++.+.+.+|.++++++.|+++|+ .++++.+..+.++.+++.+..++.                
T Consensus       252 ~~~~~g~---~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  327 (1140)
T PRK06814        252 AKETLGG---DENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILV  327 (1140)
T ss_pred             HHHHcCC---chHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhh
Confidence            3455788   89999999999999999999999999998 887777766666666655544443                


Q ss_pred             ----hhHHHHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc--cCCchHHHHHHH
Q 041759          167 ----NNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN--RSSSWTIIYLWT  240 (525)
Q Consensus       167 ----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~--~~~~wr~~f~~~  240 (525)
                          ++.+.+++..++.|++.+...+...+++.+.+|++.||++++..++...+|..+++++...+  ...++...+++.
T Consensus       328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~  407 (1140)
T PRK06814        328 FLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFI  407 (1140)
T ss_pred             hhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence                67788889999999999999999999999999999999999999999999999999884433  245677777665


Q ss_pred             HHHHHHHH
Q 041759          241 SIPTLVYS  248 (525)
Q Consensus       241 ~~~~~~~~  248 (525)
                      ++..++..
T Consensus       408 ~~~~~~~~  415 (1140)
T PRK06814        408 ALANLIVA  415 (1140)
T ss_pred             HHHHHHHH
Confidence            55444433

>PTZ00207 hypothetical protein; Provisional

Probab=98.81  E-value=1.7e-07  Score=95.12  Aligned_cols=148  Identities=7%  Similarity=0.003  Sum_probs=104.3

Q ss_pred             hhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccc-cccchhHHHH
Q 041759          345 TLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDI-SNAGKRMRIG  423 (525)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  423 (525)
                      +.+.+++|.+..+.+.+.++...    .+ .+.++.|++.||+|+|+++.++.++..++.++..+.... ...+.+.+.+
T Consensus        51 ~~L~~~lgls~~~l~~i~svg~~----~g-~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l  125 (591)
T PTZ00207         51 GAMQARYNLTQRDLSTITTVGIA----VG-YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV  125 (591)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHH----HH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence            55566788887776666554322    11 355578999999999999999999999999888775221 0012345566


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHH-HHHHHhhccCchhHHHHHHHHHHHHHHHH
Q 041759          424 LELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIF-SSVLVAAGSNNEFVSYGVFGLVIICCGFF  498 (525)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~-~p~i~~~~~~~~~~~~~~~~~~~~~~~~~  498 (525)
                      ..++.+++.+..++.....+.+.+| ++||.+.|+......+|+.+ +|+..++...+....+++.+++.++..++
T Consensus       126 ~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll  200 (591)
T PTZ00207        126 YNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGIL  200 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            6777778777777777778888887 67899999999999999874 55555543334556666666666555443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.80  E-value=1e-07  Score=93.22  Aligned_cols=152  Identities=18%  Similarity=0.194  Sum_probs=121.3

Q ss_pred             eeeccc-cccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh-hhHHHHHH----HH
Q 041759          103 IISEWG-LECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS-NNLWIYSL----LR  176 (525)
Q Consensus       103 i~~~~~-~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~-~~~~~l~~----~r  176 (525)
                      .-+|.| .   +....+.+.++..++-...-...+++..| +|.|+++.++.+.+++=..+.+.. ++.+...+    ..
T Consensus       233 yl~~~gg~---~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q  308 (400)
T PF03825_consen  233 YLQELGGY---SGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQ  308 (400)
T ss_pred             HHHHcccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            345555 6   66777888888888888888999999999 999999999999999998888887 55444333    34


Q ss_pred             HHHhhcccchhhhhheeeEeeecCcchhhHHhHHHH-HHHHHHHHHHHH-HHhccC------CchHHHHHHHHHHHHHHH
Q 041759          177 FFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSF-FFTIGTLTLPAI-AYTNRS------SSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       177 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~l~~~l-~~~~~~------~~wr~~f~~~~~~~~~~~  248 (525)
                      .++|+..+..+.....|+.+..|++.|+++.+++.. ..++|.++|..+ |++.+.      +.|...+.+.+++.++..
T Consensus       309 ~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~  388 (400)
T PF03825_consen  309 LLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVIL  388 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999998876 468999999988 444443      346667777888777777


Q ss_pred             hHhheeecCC
Q 041759          249 GLLYIFVSES  258 (525)
Q Consensus       249 ~~~~~~lpes  258 (525)
                      ++.+++.+|+
T Consensus       389 ~~f~~~fk~~  398 (400)
T PF03825_consen  389 VLFVILFKPK  398 (400)
T ss_pred             HHHHhhccCC
Confidence            6666666653

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.80  E-value=4.6e-08  Score=88.92  Aligned_cols=358  Identities=14%  Similarity=0.085  Sum_probs=208.7

Q ss_pred             HHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeec
Q 041759          120 PAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVG  199 (525)
Q Consensus       120 ~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~  199 (525)
                      +.-+..-.+++.-++.=.+.|. .-.|+++++-.+...+...+..+.++.+.+=+.-+..|...+ ....-++|+-+..+
T Consensus        47 vyPvwTYSYLv~LvpvFlLTD~-lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd  124 (433)
T KOG3810|consen   47 VYPVWTYSYLVGLVPVFLLTDY-LRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVD  124 (433)
T ss_pred             cccchhHHHHHHHHHHHHHhhh-hhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecC
Confidence            3344445566666777788998 888999998888888888888999999999999999999887 56778899999999


Q ss_pred             CcchhhHHhHHHHHHHHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHH
Q 041759          200 TEWRGLVGILDSFFFTIGTLTLPAIAYTNR---SSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIK  276 (525)
Q Consensus       200 ~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~---~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~  276 (525)
                      ++++.++.+...++.-.|-.+|..++-++.   ..+++.+-.+......+.. ...+++|..++.+..+.++++.  ...
T Consensus       125 ~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~-~~A~fLP~v~rSl~f~~~~~~~--~v~  201 (433)
T KOG3810|consen  125 PEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAV-LLALFLPRVKRSLYFHRLEDKI--SVG  201 (433)
T ss_pred             HHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHH-HHHhhCCCCchhhhhhcccccc--eec
Confidence            999999999999998888888888866543   3345555555544444444 6667787765433222222210  000


Q ss_pred             hhCCCcCCccchhhhhhhccCCCCcc-cccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccccCCh-
Q 041759          277 SLSPIKDSNQLSLSLVSAVSFGHEPA-ASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIENLGFD-  354 (525)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  354 (525)
                      +.             ++...+.+..+ .+..-......+.+..++|..+...+-..+...+...+.++...+-++..-+ 
T Consensus       202 ~~-------------e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~  268 (433)
T KOG3810|consen  202 DL-------------EEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNP  268 (433)
T ss_pred             cc-------------hhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCc
Confidence            00             00000000000 0000001123455667788766555544444444443333333333332111 


Q ss_pred             -hHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Q 041759          355 -IYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAY  433 (525)
Q Consensus       355 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (525)
                       ...++..-++..+    .++++.+..|.+--.+.|+.-++++......+.+++......   +.++.++..+++.....
T Consensus       269 ~~vyNG~veAv~tl----LGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~---~Iw~~Ya~yvlfr~~y~  341 (433)
T KOG3810|consen  269 ANVYNGAVEAVSTL----LGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQ---HIWVCYAGYVLFRVIYQ  341 (433)
T ss_pred             hhhhcCHHHHHHHH----HHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhccc---ceehhhhhHHHHHhhHh
Confidence             1112222222222    444777888887766666543333333222222222222222   24577777778777777


Q ss_pred             HHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHH----hhc------cCchhHHHHHHHHHHHHHHHHHHhc
Q 041759          434 IAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLV----AAG------SNNEFVSYGVFGLVIICCGFFVICL  502 (525)
Q Consensus       434 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  502 (525)
                      ...++....+++....+.-|..+|++.++.-+-..+-.++.    |..      ..-+...|.+++++.++...+....
T Consensus       342 l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~  420 (433)
T KOG3810|consen  342 LTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLM  420 (433)
T ss_pred             hhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777788889988876654444333332    110      0124456777787777776554433

>TIGR00901 2A0125 AmpG-related permease

Probab=98.79  E-value=2.4e-07  Score=90.31  Aligned_cols=159  Identities=11%  Similarity=0.026  Sum_probs=108.3

Q ss_pred             HHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhh-----cChhHH-HHHHHHHHHHHHHHHHhcc
Q 041759          339 VVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKW-----NRKSSL-LVLFIISGICSIMAVVAND  412 (525)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~  412 (525)
                      ......|.+.++.|.+..+.+..... .+    ...+ .++.|+++||+     |||+.+ ..+.++.++....+.+...
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~----~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~   79 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GL----PYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP   79 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HH----HHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence            34455678888899998887777533 22    1113 78999999998     788864 5666666666555555433


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCc--------hh
Q 041759          413 ISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNN--------EF  482 (525)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~--------~~  482 (525)
                      .  .+........++.+++.....+...+++.|.+|+++|+.+.++......+|.+++|.+.+.  ...+        +.
T Consensus        80 ~--~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr  157 (356)
T TIGR00901        80 S--TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG  157 (356)
T ss_pred             c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence            2  1222344445555666666677888999999999999999999999999999999988863  1223        56


Q ss_pred             HHHHHHHHHHHHHHHHHHh-ccCC
Q 041759          483 VSYGVFGLVIICCGFFVIC-LPET  505 (525)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~-~~~~  505 (525)
                      ..|.+.+++.++..+..++ .+|.
T Consensus       158 ~~f~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       158 YIFFWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCC
Confidence            6777777666655544443 4554

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=1.6e-08  Score=93.96  Aligned_cols=144  Identities=13%  Similarity=0.045  Sum_probs=124.2

Q ss_pred             CChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Q 041759          352 GFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFS  431 (525)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (525)
                      +......+.+.+...+    .+++..++.|.++||+|+|..+++|+.++..+.+++.+....     ...++.-.+.+.+
T Consensus       102 ~~e~~~iG~LFaskA~----~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy-----~~l~vAR~LQgvg  172 (464)
T KOG3764|consen  102 DRENTQIGLLFASKAL----VQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSY-----PMLFVARSLQGVG  172 (464)
T ss_pred             cccccchhHHHHHHHH----HHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchh-----HHHHHHHHHhhhh
Confidence            3445566777777766    677899999999999999999999999999999999887766     4778888999999


Q ss_pred             HHHHHHHHHhhhccccCcch-hhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHHHhccC
Q 041759          432 AYIAYTVIFIYAIELFPTCV-RNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFVICLPE  504 (525)
Q Consensus       432 ~~~~~~~~~~~~~~~~p~~~-r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (525)
                      .........+++++.+|++. |++++|+.-.+..+|-+++|.+.|.  ...|...+|.++++++++...+-+++-+
T Consensus       173 sA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  173 SAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE  248 (464)
T ss_pred             HHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence            99999999999999999875 6999999999999999999999994  5568899999999999998887766643

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.77  E-value=6.6e-08  Score=91.95  Aligned_cols=144  Identities=24%  Similarity=0.336  Sum_probs=117.0

Q ss_pred             ccceeeccccccchh--hhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhh--HHHHHHH
Q 041759          100 ALTIISEWGLECSSA--FIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNN--LWIYSLL  175 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~--~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~  175 (525)
                      .+.+..+++.   +.  ...++..+.+.++..+++++.|.++|| +|||+.+..+.....++.++.++..+  .+.+++.
T Consensus        25 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (338)
T COG0477          25 LPLLLSTLSL---SSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLIL  100 (338)
T ss_pred             HHHHHHHcCC---CchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            5555566655   44  578999999999999999999999999 99999888888776777777777766  9999999


Q ss_pred             HHHHhhcccchhhhhheeeEeeecC-cchhhHHhHHHH-HHHHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHHH
Q 041759          176 RFFSGISRATIGTCTIVLLTEKVGT-EWRGLVGILDSF-FFTIGTLTLPAIAYTNR---SSSWTIIYLWTSIPTLVY  247 (525)
Q Consensus       176 r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~l~~~l~~~~~---~~~wr~~f~~~~~~~~~~  247 (525)
                      |+++|++.+...+...+++.|+.|+ ++|+...+.... ...+|.++++.++..+.   ..+||+.|.+........
T Consensus       101 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (338)
T COG0477         101 RLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL  177 (338)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            9999999999999999999999987 678888888888 57888888886654433   358999776666655443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.77  E-value=1.8e-07  Score=88.23  Aligned_cols=148  Identities=11%  Similarity=0.019  Sum_probs=108.4

Q ss_pred             hhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHH
Q 041759          345 TLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGL  424 (525)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (525)
                      +.+-++++++..+..++.+...+    ...+.++..|.+.||+|.|++..++.++..+-.+.+.+....+  +.+..+++
T Consensus        38 ~~i~~~~~LS~~q~~ll~aiPil----~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~--~~~~ll~~  111 (417)
T COG2223          38 VFIKSDFGLSEGQKGLLVAIPIL----VGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP--STWQLLVI  111 (417)
T ss_pred             hhhccccCCCHHHHHHHHHHHHH----HhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC--chHHHHHH
Confidence            34447799999999999888777    7778999999999999999999999999999999888887662  12234444


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHH----HHHHHHhhccC-chhHHHHHHHHHHHHHHHHH
Q 041759          425 ELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAI----FSSVLVAAGSN-NEFVSYGVFGLVIICCGFFV  499 (525)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~----~~p~i~~~~~~-~~~~~~~~~~~~~~~~~~~~  499 (525)
                      .++.+++ +..+.....++++.+|++++|.+.|+.. .+++|..    ++|.+...... .+.....++....++..+..
T Consensus       112 gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~  189 (417)
T COG2223         112 GLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLA  189 (417)
T ss_pred             HHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4444443 6667888899999999999999999998 7766654    56666653321 24444455555555544443


Q ss_pred             H
Q 041759          500 I  500 (525)
Q Consensus       500 ~  500 (525)
                      +
T Consensus       190 ~  190 (417)
T COG2223         190 W  190 (417)
T ss_pred             H
Confidence            3

>TIGR00896 CynX cyanate transporter

Probab=98.75  E-value=6.9e-08  Score=94.06  Aligned_cols=125  Identities=10%  Similarity=0.071  Sum_probs=97.9

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccC-CchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSL-GRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFF  178 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~-Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  178 (525)
                      +|.+.++.|.   +..+.+.+.+.+.++..++.++.|++.|| + +||+.+.++.++.+++.+...+.++..... .-++
T Consensus       220 lp~~~~~~g~---~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l  294 (355)
T TIGR00896       220 LPAILISHGA---SAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALV  294 (355)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHH
Confidence            4455566788   88999999999999999999999999999 9 567777788888888877777665433322 4578


Q ss_pred             HhhcccchhhhhheeeEeeec-CcchhhHHhHHHHHHHHHHHHHHHH-HHhcc
Q 041759          179 SGISRATIGTCTIVLLTEKVG-TEWRGLVGILDSFFFTIGTLTLPAI-AYTNR  229 (525)
Q Consensus       179 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~  229 (525)
                      .|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+ +.+.+
T Consensus       295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~  347 (355)
T TIGR00896       295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD  347 (355)
T ss_pred             HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999888887777665444 5667888898888888888999987 55554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.75  E-value=4.5e-07  Score=90.07  Aligned_cols=168  Identities=11%  Similarity=0.069  Sum_probs=111.0

Q ss_pred             HHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHH----hhcChhHHHHH-HHHHHHHHHHHHH
Q 041759          335 FGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQ----KWNRKSSLLVL-FIISGICSIMAVV  409 (525)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----~~g~~~~~~~~-~~~~~~~~~~~~~  409 (525)
                      ++.......++.+++++|.+......+.....+    ..++..++.|+++|    |+|||+.+++. .....++++++.+
T Consensus        18 ~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l----~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~   93 (477)
T TIGR01301        18 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPL----SGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGF   93 (477)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence            344444444566778899998888888777776    77788999999999    59999988775 5555555555555


Q ss_pred             hcccc--------cc--ch--hHHHHHHHHHHHHHHHHHHHHHhhhccccCcchh--hhhhHHHHHHHHHHHHHHHHHHh
Q 041759          410 ANDIS--------NA--GK--RMRIGLELASLFSAYIAYTVIFIYAIELFPTCVR--NSATSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       410 ~~~~~--------~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r--~~~~~~~~~~~~~g~~~~p~i~~  475 (525)
                      .....        ..  .+  ...++...+..++.....+...++++|..|+++|  +.+.++.+....+|+++++.+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~  173 (477)
T TIGR01301        94 AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA  173 (477)
T ss_pred             CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43210        00  01  1223333344556666777788999999998865  57888888888999999988876


Q ss_pred             hcc-----------------CchhHHHHHHHHHHHHHHHHH-HhccCCC
Q 041759          476 AGS-----------------NNEFVSYGVFGLVIICCGFFV-ICLPETR  506 (525)
Q Consensus       476 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  506 (525)
                      ...                 .+....|.+.+++.+++.++. +..+|..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       174 YSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            421                 033456666666665555443 4456643

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.75  E-value=7.6e-07  Score=92.07  Aligned_cols=147  Identities=14%  Similarity=0.135  Sum_probs=118.0

Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh--------hHHHHH
Q 041759          102 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN--------NLWIYS  173 (525)
Q Consensus       102 ~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~--------~~~~l~  173 (525)
                      .+.+.+|.   +......+...+....-+..+++|+++|+++||++.+.++.++..+|.++.+++.        .....+
T Consensus        13 Yl~~~lg~---~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l   89 (654)
T TIGR00926        13 YFLNFLGF---SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDL   89 (654)
T ss_pred             HHHHHcCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHH
Confidence            44556788   8888888888888888888899999999989999999999999999998887642        123466


Q ss_pred             HHHHHHhhcccchhhhhheeeEeeecCc---chhhHHhHHHHHHHHHHHHHHHH-HHhcc-------CCchHHHHHHHHH
Q 041759          174 LLRFFSGISRATIGTCTIVLLTEKVGTE---WRGLVGILDSFFFTIGTLTLPAI-AYTNR-------SSSWTIIYLWTSI  242 (525)
Q Consensus       174 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~l~~~l-~~~~~-------~~~wr~~f~~~~~  242 (525)
                      ++-.+..+|.|++-+...+...|-++++   +|...+.++..+.++|.++++.+ .++-.       ..+|...|.+.++
T Consensus        90 ~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i  169 (654)
T TIGR00926        90 LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAI  169 (654)
T ss_pred             HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHH
Confidence            7888899999999999999999988754   36677888899999999998877 44432       2369999999988


Q ss_pred             HHHHHHhHh
Q 041759          243 PTLVYSGLL  251 (525)
Q Consensus       243 ~~~~~~~~~  251 (525)
                      ..++.+++.
T Consensus       170 ~m~ia~lvf  178 (654)
T TIGR00926       170 LMILALIVF  178 (654)
T ss_pred             HHHHHHHHH
Confidence            888777443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.75  E-value=6.7e-08  Score=99.32  Aligned_cols=146  Identities=16%  Similarity=0.063  Sum_probs=118.2

Q ss_pred             cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHH
Q 041759          351 LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLF  430 (525)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (525)
                      ...+........++..+    |.++|.++.|.++||+|||+++.++.++..++.+...+..+.     ....++-++.|+
T Consensus       113 ~c~~~~~~~~~~s~~~~----G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~-----~~~~~~Rfl~G~  183 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFL----GVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNY-----WMFLIFRFLSGF  183 (521)
T ss_pred             eeCcHhHHHHHHHHHHH----HHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHHHHHh
Confidence            34455555566666666    777999999999999999999999999999999887777665     578889999999


Q ss_pred             HHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHhccCCC
Q 041759          431 SAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICLPETR  506 (525)
Q Consensus       431 ~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (525)
                      +.+........+..|.++++.|+.+..+ ......++.++|.+.++...++.+.+++..+..++..++.++.+|.+
T Consensus       184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~  258 (521)
T KOG0255|consen  184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESP  258 (521)
T ss_pred             hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcCh
Confidence            9999999999999999999999999999 77788888888888876555677777777776666655545454643

>PRK09669 putative symporter YagG; Provisional

Probab=98.71  E-value=5.9e-07  Score=90.36  Aligned_cols=112  Identities=15%  Similarity=0.250  Sum_probs=87.6

Q ss_pred             hhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHhhcccchhhhhhee
Q 041759          116 IKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIF--SNNLWIYSLLRFFSGISRATIGTCTIVL  193 (525)
Q Consensus       116 ~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~  193 (525)
                      ..+.+.....++..++.+++++++|| +|+|+.+..+.++.++..+...+  .++.+.+++..++.|++.+...+...++
T Consensus       265 ~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am  343 (444)
T PRK09669        265 LATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM  343 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667778888999999999999 99999999888776654443333  3577778888899999999999999999


Q ss_pred             eEeeec-------CcchhhHHhHHHHHHHHHHHHHHHH-HHhc
Q 041759          194 LTEKVG-------TEWRGLVGILDSFFFTIGTLTLPAI-AYTN  228 (525)
Q Consensus       194 i~~~~~-------~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~  228 (525)
                      ++|..+       ++..|...+..+....+|..+|+.+ +.++
T Consensus       344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll  386 (444)
T PRK09669        344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL  386 (444)
T ss_pred             HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998875       2334667888888889999998877 4444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.69  E-value=3.7e-07  Score=90.56  Aligned_cols=146  Identities=13%  Similarity=0.106  Sum_probs=125.4

Q ss_pred             ccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 041759          350 NLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASL  429 (525)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (525)
                      ++.++..+.+.+.+....    |.+++.+.++++.||+|-|+++..+.++.+++.++..+....   +....+++-++.|
T Consensus        67 ~~~ws~~~k~~i~ss~~~----G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~---~~~~~~~~R~lqG  139 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFW----GYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI---GFYLLLVLRFLQG  139 (466)
T ss_pred             eecCCHHHHHHHHHHHHH----HHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh---cchhhHHHHHHhH
Confidence            456778888888888888    888999999999999999999999999999999999988765   2336688889999


Q ss_pred             HHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--c-cCchhHHHHHHHHHHHHHHHHHHhc
Q 041759          430 FSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--G-SNNEFVSYGVFGLVIICCGFFVICL  502 (525)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~  502 (525)
                      ++.+..+|....+...-.|++.|++..++......+|.+++-.+.|.  . ..|+...|++.+++.++..++++++
T Consensus       140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887777764  2 3678899999998888777665444

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.69  E-value=2.2e-07  Score=92.92  Aligned_cols=114  Identities=18%  Similarity=0.302  Sum_probs=101.2

Q ss_pred             hhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhcccchhhhhh
Q 041759          114 AFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN--NLWIYSLLRFFSGISRATIGTCTI  191 (525)
Q Consensus       114 ~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~  191 (525)
                      +...+.+..+..++..++.+++++++|| +|+|+++..+.++.+++.++..+.+  |.+.+++.-++.|++.+...+...
T Consensus       259 ~~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~  337 (428)
T PF13347_consen  259 EGLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPW  337 (428)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccc
Confidence            3567888889999999999999999999 9999999999999999999988886  999999999999999999999999


Q ss_pred             eeeEeeecC-------cchhhHHhHHHHHHHHHHHHHHHH-HHhc
Q 041759          192 VLLTEKVGT-------EWRGLVGILDSFFFTIGTLTLPAI-AYTN  228 (525)
Q Consensus       192 ~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~l~~~l-~~~~  228 (525)
                      ++++|..+.       ++.|...+.++...-+|..+++.+ +.++
T Consensus       338 a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l  382 (428)
T PF13347_consen  338 AMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL  382 (428)
T ss_pred             cccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            999998873       445888999999999999988876 4443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.66  E-value=7.6e-08  Score=92.76  Aligned_cols=145  Identities=11%  Similarity=0.078  Sum_probs=113.1

Q ss_pred             cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHhc-cccccchhHHHHHHHHH
Q 041759          351 LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKW-NRKSSLLVLFIISGICSIMAVVAN-DISNAGKRMRIGLELAS  428 (525)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  428 (525)
                      +|++...+..+.+....    ..-+..+++||++||+ |+|+.+..+.+++.++.+++.... ..    ....++.+.+.
T Consensus        56 Lg~~~~~A~~l~~~y~s----lVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~----~~gl~i~L~~I  127 (498)
T COG3104          56 LGFDETHATGLFSAYGS----LVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSG----PGGLYIGLALI  127 (498)
T ss_pred             CCcChHhhHHHHHHHHH----HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc----ccHHHHHHHHH
Confidence            55887777666655544    3335778899999995 999999999999999999998874 22    23566666677


Q ss_pred             HHHHHHHHHHHHhhhccccCcc--hhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHHHhcc
Q 041759          429 LFSAYIAYTVIFIYAIELFPTC--VRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFVICLP  503 (525)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~p~~--~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (525)
                      ..+.|..=+....++.|.+|++  .|..++++.++..++|++++|++.++  ...++...|...++...++.+.++..+
T Consensus       128 ~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         128 IVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            7888888888999999999764  36677777788889999999999985  445678888888888888877766654

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.65  E-value=2e-08  Score=95.09  Aligned_cols=125  Identities=14%  Similarity=0.166  Sum_probs=98.5

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccc---cCCchHHHH-HHHHHHHHHHHHHHhhhhHH-----
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADS---SLGRKNLLF-LSCLTMSVATSLTIFSNNLW-----  170 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr---~~Grk~~~~-~~~~~~~i~~~~~~~~~~~~-----  170 (525)
                      .+++.+++|+   +....+.+--...+...+.+++.|..+||   ||||||.++ .+.+...++.++..++.++.     
T Consensus        55 ~tPyl~~lGv---phk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd  131 (498)
T KOG0637|consen   55 LTPYLQSLGV---PHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD  131 (498)
T ss_pred             ccHHHHHcCC---CcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence            6778888999   78888888888888889999999999998   799877655 46666677777777765433     


Q ss_pred             ------------HHHHHHHHHhhcccchhhhhheeeEeeecCcchhh-HHhHHHHHHHHHHHHHHHHHHh
Q 041759          171 ------------IYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGL-VGILDSFFFTIGTLTLPAIAYT  227 (525)
Q Consensus       171 ------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~l~~~l~~~  227 (525)
                                  .++++--+.=++.......+-+++.|...++++.+ +.+++..+.++|.++|..++..
T Consensus       132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y  201 (498)
T KOG0637|consen  132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY  201 (498)
T ss_pred             CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence                        34444455555666778888999999998776666 9999999999999999888653

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.60  E-value=1.5e-06  Score=81.64  Aligned_cols=132  Identities=9%  Similarity=-0.062  Sum_probs=110.5

Q ss_pred             HHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccc
Q 041759          338 GVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAG  417 (525)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (525)
                      ....-.+|.+.+.++.+..+++.+......    +..++.+..+++.+|+|.|+-++.++.++++++.++.-....  ..
T Consensus        30 ~l~diLip~l~~~f~ls~~~a~liqfaff~----gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~--~~  103 (422)
T COG0738          30 CLNDILIPHLKEVFDLTYFEASLIQFAFFG----GYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS--KS  103 (422)
T ss_pred             hcchhhHHHHHHHhCccHHHHHHHHHHHHH----HHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh--hh
Confidence            344555677777788888888877766666    667888899999999999999999999999999998765544  24


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 041759          418 KRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~  475 (525)
                      +...+...++.+.+.+........++..+.|++....-+.+.+.++.+|++++|++.+
T Consensus       104 y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~  161 (422)
T COG0738         104 YGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGS  161 (422)
T ss_pred             HHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            5567777788888888888899999999999888888899999999999999999987

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.59  E-value=7.3e-07  Score=90.03  Aligned_cols=144  Identities=13%  Similarity=0.084  Sum_probs=99.3

Q ss_pred             hhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHH
Q 041759          344 MTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIG  423 (525)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (525)
                      +++...++|.+..... +.....+    +..++.++.|+++|.+|||..++.+.++..++.++.....+.     ...+.
T Consensus        67 l~~I~~diG~~~~~~w-~~~~~~l----~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~-----~~~ia  136 (599)
T PF06609_consen   67 LPYINADIGGSDNWSW-FSTAWTL----ASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNM-----NTFIA  136 (599)
T ss_pred             HHHHHHhcCCCccchH-HHHHHHH----HHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcH-----HHHHH
Confidence            3555666776543332 2222333    455788899999999999999999999999999988776554     45667


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHH
Q 041759          424 LELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFF  498 (525)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~  498 (525)
                      ...+.+++.+... .....++|+.|.+.|..+.++...........+|.+...  ...++.+.|++.++...++.++
T Consensus       137 g~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  137 GMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             HHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence            7777777765554 455668999999999887776665554445566777652  2345677777776665555543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.55  E-value=1.3e-05  Score=77.53  Aligned_cols=270  Identities=11%  Similarity=0.055  Sum_probs=134.0

Q ss_pred             hcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhccC--------------Cc---hHHHHHHHHHH
Q 041759          181 ISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRS--------------SS---WTIIYLWTSIP  243 (525)
Q Consensus       181 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~--------------~~---wr~~f~~~~~~  243 (525)
                      +-++.-..+.-.+.-.+..+++++.+..-...+.++|..++..+-..+.+              .|   -..-..+.+..
T Consensus       130 fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~  209 (544)
T PF13000_consen  130 FLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWV  209 (544)
T ss_pred             HHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHH
Confidence            33343444444555556677888888888888888888776654222211              11   12223344555


Q ss_pred             HHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCC-CCcccccccccchhhhhhhhcchh
Q 041759          244 TLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFG-HEPAASSKESSFLSSIRELFVRRW  322 (525)
Q Consensus       244 ~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~  322 (525)
                      .++..+...++-+|.|.-- ...+.+...       . .+++..+.+ .+..++. ...++...-+.....+.+++|-|+
T Consensus       210 ~l~~T~~v~~~k~E~~~~~-~~~~~~~~~-------~-~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~  279 (544)
T PF13000_consen  210 FLIVTILVAFFKKEKPHSE-SLPKIEPIN-------K-SDGKSKEIS-IEYDESDVISTEEILSIKDVYKSLWKILKLPN  279 (544)
T ss_pred             HHHHHHHHheEeecccccc-cCccccccc-------c-ccccccccc-eecccccccchhhhhhHHHHHHHHHHHHcCch
Confidence            5555545566666654210 000000000       0 000000000 0000000 000000011122345667788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhh--cChh---------
Q 041759          323 ALERTLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKW--NRKS---------  391 (525)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~--g~~~---------  391 (525)
                      .+...++.+..-.+.....-...+-+-+.|++....+.+. +..+       +..++.++++-|+  |+++         
T Consensus       280 V~~li~ilL~~KigF~a~da~T~LKLlEkG~~KE~LAl~~-li~~-------P~qii~~~~~~Kws~g~~P~~~~~~~l~  351 (544)
T PF13000_consen  280 VQTLIIILLTAKIGFQANDAVTSLKLLEKGLSKEDLALLV-LIDF-------PFQIILPYYIGKWSAGSPPLDVDNKALP  351 (544)
T ss_pred             HHHHHHHHHHHHhccccchhhhHHHHHHcCCCHHHhHHHH-HHhh-------hHHHHHHHHhhhhhcCCCcccccccccc
Confidence            7766666555555544444444555556787766555443 4445       6677777777775  2331         


Q ss_pred             --------------------HHHHHHHHHHHHH----HHHHHhccccc---cchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 041759          392 --------------------SLLVLFIISGICS----IMAVVANDISN---AGKRMRIGLELASLFSAYIAYTVIFIYAI  444 (525)
Q Consensus       392 --------------------~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (525)
                                          ....++..-.+..    .+....+....   .-+...++..++..+.....+....++-+
T Consensus       352 ~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFha  431 (544)
T PF13000_consen  352 NFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHA  431 (544)
T ss_pred             ccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                1111221111111    11111221100   11223344445555556666677788888


Q ss_pred             cccCcchhhhhhHHHHHHHHHHHH
Q 041759          445 ELFPTCVRNSATSIMRLAIIFAAI  468 (525)
Q Consensus       445 ~~~p~~~r~~~~~~~~~~~~~g~~  468 (525)
                      .+.++..-|+.|.+.|++.++|+-
T Consensus       432 rISDP~IGGTYMTLLNTvSNLGGt  455 (544)
T PF13000_consen  432 RISDPAIGGTYMTLLNTVSNLGGT  455 (544)
T ss_pred             hccCcccchHHHHHHHHHHhcCCC
Confidence            999999999999999999999865

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.55  E-value=3.5e-07  Score=80.99  Aligned_cols=141  Identities=15%  Similarity=0.073  Sum_probs=105.1

Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHh
Q 041759          102 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMS-VATSLTIFSNNLWIYSLLRFFSG  180 (525)
Q Consensus       102 ~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~-i~~~~~~~~~~~~~l~~~r~l~G  180 (525)
                      -+++.||+   |+...+.+.+.-..-.++.+++.|.++|| +|++...+.+..+.. ++-.+..|  +++.=.++..+.|
T Consensus       290 fF~~rfGl---S~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lG  363 (459)
T KOG4686|consen  290 FFQKRFGL---SAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLG  363 (459)
T ss_pred             HHHHhhCC---ChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHh
Confidence            57889999   99999999999888889999999999999 999988777555443 33333333  3444456777888


Q ss_pred             hcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc-cC---CchHHHHHH-HHHHHHHHH
Q 041759          181 ISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN-RS---SSWTIIYLW-TSIPTLVYS  248 (525)
Q Consensus       181 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~-~~---~~wr~~f~~-~~~~~~~~~  248 (525)
                      ++...........++...|+++.|.+.+..+...++|..+.|+++.++ +.   +.|--+|.+ .+.+++...
T Consensus       364 LsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~sv  436 (459)
T KOG4686|consen  364 LSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSV  436 (459)
T ss_pred             hhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHH
Confidence            887766665667778888999999999999999999999999996554 32   335445544 444444444

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.52  E-value=1.2e-06  Score=89.64  Aligned_cols=138  Identities=17%  Similarity=0.198  Sum_probs=111.3

Q ss_pred             HHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHH
Q 041759          359 VVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTV  438 (525)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (525)
                      ..+.+...+    +..++.++.|+++|++|||+.+.++.+...++.++.....+.     ..+.+.-++.|++.+....+
T Consensus        92 s~~~s~~~l----ga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~-----~~l~~GR~l~G~g~G~~~~~  162 (513)
T KOG0254|consen   92 GLLTSILNL----GALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSW-----YQLIVGRILTGLGVGGASVL  162 (513)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHhccchhhhhhc
Confidence            566666666    777999999999999999999999999999999999888754     57888999999999999999


Q ss_pred             HHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhcc---CchhHHHHHHHHHHHHHHHHHHhccCC
Q 041759          439 IFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGS---NNEFVSYGVFGLVIICCGFFVICLPET  505 (525)
Q Consensus       439 ~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (525)
                      ...+.+|..|++.||...+..+....+|..++-.+.....   .++...+.+..+.+++..+..+++||+
T Consensus       163 ~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pes  232 (513)
T KOG0254|consen  163 APVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPES  232 (513)
T ss_pred             chhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999988888888833333222   245566666666666555556666764

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.46  E-value=1.8e-05  Score=77.21  Aligned_cols=115  Identities=17%  Similarity=0.301  Sum_probs=96.5

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhcccchhhhh
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN--NLWIYSLLRFFSGISRATIGTCT  190 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~  190 (525)
                      ++.+..+.......+.+++.+++.++.+| +|+|+++.++.++..++.++..+.+  +.+.+++..++.++|.+...+..
T Consensus       270 ~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~  348 (467)
T COG2211         270 PELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLP  348 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccccc
Confidence            66677778888888888889999999999 9999999999999999999988875  78899999999999999999999


Q ss_pred             heeeEeeec-------CcchhhHHhHHHHHHHHHHHHHHHH-HHhc
Q 041759          191 IVLLTEKVG-------TEWRGLVGILDSFFFTIGTLTLPAI-AYTN  228 (525)
Q Consensus       191 ~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~  228 (525)
                      .++++|..+       .+.-|...+....+.=+|.+++..+ ++.+
T Consensus       349 wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L  394 (467)
T COG2211         349 WAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL  394 (467)
T ss_pred             HHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988764       2344677777777777888887655 5544

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.45  E-value=1.9e-05  Score=73.26  Aligned_cols=339  Identities=10%  Similarity=0.018  Sum_probs=182.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      .+..+.+.+...+....... +                                     .|-+-+.=|+   |..+.+..
T Consensus        32 ~illLl~LYllQGiP~GL~~-~-------------------------------------iP~lL~ak~v---Syt~~a~f   70 (510)
T KOG3574|consen   32 SILLLLFLYLLQGIPLGLIG-A-------------------------------------IPLLLQAKGV---SYTSQAIF   70 (510)
T ss_pred             hHHHHHHHHHHcCCchhHhh-h-------------------------------------hHHHhcCCCc---chhhhhhh
Confidence            45555666777777777766 5                                     5666666666   66666654


Q ss_pred             HHHHHHHHHHhHHhhHhccc-----ccCCchHHHHH-HHHHHHHHHHHHHhh-----------hhHHHHHHHHHHHhhcc
Q 041759          121 AASHFTGCLLGIVFLATLAD-----SSLGRKNLLFL-SCLTMSVATSLTIFS-----------NNLWIYSLLRFFSGISR  183 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~d-----r~~Grk~~~~~-~~~~~~i~~~~~~~~-----------~~~~~l~~~r~l~G~~~  183 (525)
                      .-++. - ..--+.+.++.|     | +||||..++ +..+.+...++.+.-           ++...+....++.-+.+
T Consensus        71 S~ay~-P-~sLKllWaPiVDs~y~k~-~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnfla  147 (510)
T KOG3574|consen   71 SFAYW-P-FSLKLLWAPIVDSVYSKR-FGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLA  147 (510)
T ss_pred             hhhhh-H-HHHHHHHHhhhHHHHHHh-hccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHH
Confidence            33321 1 122457888888     8 999987654 444444444444331           23334444556666677


Q ss_pred             cchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhccC--------CchH---------HHHHHHHHHHHH
Q 041759          184 ATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRS--------SSWT---------IIYLWTSIPTLV  246 (525)
Q Consensus       184 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~--------~~wr---------~~f~~~~~~~~~  246 (525)
                      +......-.+.-.+..+++-|.+......+.+.|.+++..+-..+..        .+|.         .-.++.+.+.++
T Consensus       148 AtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~v  227 (510)
T KOG3574|consen  148 ATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIV  227 (510)
T ss_pred             hhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHH
Confidence            76777777777777788888888888888888888877654211110        1111         122333333333


Q ss_pred             HHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHH
Q 041759          247 YSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALER  326 (525)
Q Consensus       247 ~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (525)
                      ...+..++-+|.+        ++..+         ++..+..                    ..++.++++++-|..+..
T Consensus       228 at~Lv~~~kke~~--------~~~~~---------e~~~~i~--------------------~~yk~l~~vLklk~v~~l  270 (510)
T KOG3574|consen  228 ATTLVALLKKEND--------ESVDE---------ELELGIH--------------------ESYKLLRDVLKLKSVRWL  270 (510)
T ss_pred             HHHHHHHhcCCCc--------hhhhh---------hhhcCHH--------------------HHHHHHHHHHcCccHHHH
Confidence            3312222222211        11000         0000000                    001356777887776666


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhc--ChhHH------HHHHH
Q 041759          327 TLALMVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWN--RKSSL------LVLFI  398 (525)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g--~~~~~------~~~~~  398 (525)
                      ..+....-++........+.-+-+.|.+...-+.+. +       ..++..+..++..-|+.  +|++.      ..=..
T Consensus       271 a~i~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~-v-------~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~  342 (510)
T KOG3574|consen  271 AGILLTGKLGFQAADALTSLKLLEHGVPKEELALIA-V-------PLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLG  342 (510)
T ss_pred             HHHHHHHHHHhhhhhhccchHHHHcCCChhHheeee-e-------ehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHH
Confidence            555555555554444445666667788766654433 2       23356666666655542  22211      11111


Q ss_pred             HHHHHHHHHHHhccccc-------cchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHH
Q 041759          399 ISGICSIMAVVANDISN-------AGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAI  468 (525)
Q Consensus       399 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~  468 (525)
                      ......++..+.+....       ......+....+........+....+..+++.++...|+.+.+.++..++|+-
T Consensus       343 ~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~  419 (510)
T KOG3574|consen  343 GGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGN  419 (510)
T ss_pred             HHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCC
Confidence            22222222222222110       01112222234444555556667778889999999999999999999988865

>TIGR00788 fbt folate/biopterin transporter

Probab=98.43  E-value=5.5e-07  Score=90.73  Aligned_cols=148  Identities=11%  Similarity=0.032  Sum_probs=116.4

Q ss_pred             eccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh----------hhHHHHHH
Q 041759          105 SEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS----------NNLWIYSL  174 (525)
Q Consensus       105 ~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~----------~~~~~l~~  174 (525)
                      +++|.   ++.+.|++.....++..++....+++.+| ++.|+++.++.++.+++.+.....          ++.+.++.
T Consensus       281 ~~lG~---s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~  356 (468)
T TIGR00788       281 QCLPG---GPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLG  356 (468)
T ss_pred             ccCCC---CcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeee
Confidence            46788   99999999999999999999999999999 999999999999999888654311          34445666


Q ss_pred             HHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc-c-------CCchHHHHHH-HHHHHH
Q 041759          175 LRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN-R-------SSSWTIIYLW-TSIPTL  245 (525)
Q Consensus       175 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~-~-------~~~wr~~f~~-~~~~~~  245 (525)
                      .-++.+++.+........++.+.+|++.++...++.+...++|..+++.++..+ .       +++.++...+ ..+..+
T Consensus       357 ~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l  436 (468)
T TIGR00788       357 DSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPL  436 (468)
T ss_pred             hhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHH
Confidence            678899999999999999999999999999999999999999999999875543 2       2333443333 333334


Q ss_pred             HHHhHhheeecC
Q 041759          246 VYSGLLYIFVSE  257 (525)
Q Consensus       246 ~~~~~~~~~lpe  257 (525)
                      +.. ....++|+
T Consensus       437 ~~l-~~~~llP~  447 (468)
T TIGR00788       437 LPL-PLLHLLPR  447 (468)
T ss_pred             HHH-HHHHhCCC
Confidence            444 44457785

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.42  E-value=3.1e-07  Score=66.45  Aligned_cols=73  Identities=22%  Similarity=0.387  Sum_probs=67.6

Q ss_pred             CCCccccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 041759           95 NPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYS  173 (525)
Q Consensus        95 ~p~~~~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~  173 (525)
                      +|.  +|.+++|.++   |..+.|++.+..++||++|++...++.++ ..+++.+..+++...+..+.+++.++.+.+.
T Consensus        12 Tpl--LP~M~~~~~l---s~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen   12 TPL--LPLMQADGGL---SLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             HhH--hHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            366  9999999999   99999999999999999999999999998 8889999999999999999999998877653

Note that many members are hypothetical proteins.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.39  E-value=1e-05  Score=72.86  Aligned_cols=152  Identities=11%  Similarity=0.027  Sum_probs=100.4

Q ss_pred             hhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcccc--ccchhHHH
Q 041759          345 TLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDIS--NAGKRMRI  422 (525)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  422 (525)
                      +.+.+.+|++..+...+.....+    |..+| ++.|.+.|++|++.++.++.....++..++.......  ..+.+...
T Consensus        26 ~~Lk~~l~~sq~~l~~l~~~~~~----G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~  100 (250)
T PF06813_consen   26 PQLKSRLGYSQSQLNTLSTAGDI----GSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC  100 (250)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHH----Hhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHH
Confidence            45556689998888888877777    66554 7889999999999999999999999998887654331  11233444


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHh-hccCchhHHHHHHHHHHH-HHHHHHH
Q 041759          423 GLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVA-AGSNNEFVSYGVFGLVII-CCGFFVI  500 (525)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~-~~~~~~~~~~~~~~~~~~-~~~~~~~  500 (525)
                      +..++.+.+.............+.+|. +||++.|+.-....+++.+...+.. ....+....+.+.+.... ++.+..+
T Consensus       101 ~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~  179 (250)
T PF06813_consen  101 LFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMF  179 (250)
T ss_pred             HHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhh
Confidence            444444444444444555556678885 7999999999999988887776665 322233333444444333 3333334


Q ss_pred             hc
Q 041759          501 CL  502 (525)
Q Consensus       501 ~~  502 (525)
                      ++
T Consensus       180 ~v  181 (250)
T PF06813_consen  180 FV  181 (250)
T ss_pred             he
Confidence            44

>PRK11462 putative transporter; Provisional

Probab=98.38  E-value=1.4e-05  Score=80.48  Aligned_cols=109  Identities=14%  Similarity=0.159  Sum_probs=74.8

Q ss_pred             hhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhcccchhhhhhe
Q 041759          115 FIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN--NLWIYSLLRFFSGISRATIGTCTIV  192 (525)
Q Consensus       115 ~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~  192 (525)
                      ...+.+...+.++..++.+++++++|| +|+|+++..+..+.++..++..+.+  +.+.+++.-++.|++.+...+...+
T Consensus       263 ~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~  341 (460)
T PRK11462        263 EVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV  341 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667788889999999999999999 9999987766555544444433332  2334455556778887777776677


Q ss_pred             eeEeeec-------CcchhhHHhHHHHHHHHHHHHHHHH
Q 041759          193 LLTEKVG-------TEWRGLVGILDSFFFTIGTLTLPAI  224 (525)
Q Consensus       193 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~l~~~l  224 (525)
                      +++|..+       +++.|...+......-+|..+++.+
T Consensus       342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i  380 (460)
T PRK11462        342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGAL  380 (460)
T ss_pred             HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            7777665       3333555677677777787777766

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=98.35  E-value=0.00014  Score=71.90  Aligned_cols=56  Identities=20%  Similarity=0.096  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHH
Q 041759          419 RMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLV  474 (525)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~  474 (525)
                      +..++..++.++..|...+....+.++..++++|..+..+....-.+|-.+|..+.
T Consensus       373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       373 AYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667788888888888888899999999888888887777777777766666553

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.32  E-value=1.3e-05  Score=80.03  Aligned_cols=149  Identities=14%  Similarity=0.128  Sum_probs=112.5

Q ss_pred             cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 041759          349 ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELAS  428 (525)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (525)
                      ++.+......+.+.++..+    +.+++.+.++.+.||++..+.+....++..+..++-....+     ....++.-++.
T Consensus        74 edl~~~~~~l~~~~t~F~v----~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s-----~~~~ialr~ll  144 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYV----GYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS-----FPGLIALRFLL  144 (495)
T ss_pred             cccchhhhhhhhHHHHHHH----HHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHH
Confidence            3445555555555566666    67799999999999999666655555555444444433333     34778889999


Q ss_pred             HHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--------ccCchhHHHHHHHHHHHHHHHH-H
Q 041759          429 LFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--------GSNNEFVSYGVFGLVIICCGFF-V  499 (525)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--------~~~~~~~~~~~~~~~~~~~~~~-~  499 (525)
                      |++.+..+|....++..-+.++.|+..+|+.+....+|+++++++...        ...++.+.|++-+++.++..++ .
T Consensus       145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f  224 (495)
T KOG2533|consen  145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF  224 (495)
T ss_pred             HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence            999999999999999999999999999999999999999999888753        3457889999999888877654 4


Q ss_pred             HhccCCC
Q 041759          500 ICLPETR  506 (525)
Q Consensus       500 ~~~~~~~  506 (525)
                      +++|+..
T Consensus       225 ~~lp~~P  231 (495)
T KOG2533|consen  225 FFLPDNP  231 (495)
T ss_pred             EEecCCh
Confidence            5566543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.31  E-value=2.4e-06  Score=81.24  Aligned_cols=127  Identities=17%  Similarity=0.181  Sum_probs=99.8

Q ss_pred             HHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhH----H----HHHHHHHHHhhcccchhhhhheeeEeeec
Q 041759          128 CLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNL----W----IYSLLRFFSGISRATIGTCTIVLLTEKVG  199 (525)
Q Consensus       128 ~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~----~----~l~~~r~l~G~~~~~~~~~~~~~i~~~~~  199 (525)
                      ++-|-.+...+.|+ .|||++.+.+.+++.+..+..+...|.    .    .+.+..++.-+|   .......+-+|.+|
T Consensus       361 ~vPGyw~tv~~id~-iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FP  436 (538)
T KOG0252|consen  361 TVPGYWFTVYFIDI-IGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFP  436 (538)
T ss_pred             cCCceeEEEEEeeh-hhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhch
Confidence            33466778889999 999999999999999999998887661    1    222333333333   22344456689999


Q ss_pred             CcchhhHHhHHHHHHHHHHHHHHHH-HHhcc-----CCchHHHHHHHHHHHHHHHhHhheeecCCc
Q 041759          200 TEWRGLVGILDSFFFTIGTLTLPAI-AYTNR-----SSSWTIIYLWTSIPTLVYSGLLYIFVSESP  259 (525)
Q Consensus       200 ~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~-----~~~wr~~f~~~~~~~~~~~~~~~~~lpesp  259 (525)
                      .+.|+..-++..+..-+|.++|... .+...     ..+.|+.|++.+...++.. +..+++|||.
T Consensus       437 arvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi-~~T~l~pEtk  501 (538)
T KOG0252|consen  437 ARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGI-LFTLLIPETK  501 (538)
T ss_pred             HHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhH-heeEEeeccc
Confidence            9999999999999999999998866 66665     6789999999999999888 8888899985

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.25  E-value=1.7e-05  Score=73.51  Aligned_cols=149  Identities=15%  Similarity=0.112  Sum_probs=115.1

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFS  179 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  179 (525)
                      +|.+-.|-|+   |..+.|++.+...+..+..++....+++|+-.+|+..+....++.++.+.+.+.+....+.- -++.
T Consensus       231 LP~ili~~G~---sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~ll  306 (395)
T COG2807         231 LPAILIDRGL---SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLL  306 (395)
T ss_pred             HHHHHHHcCC---CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHH
Confidence            6889999999   99999999999999999999999999997456788888888888888888878765433333 4999


Q ss_pred             hhcccchhhhhheeeEeeecC-cchhhHHhHHHHHHHHHHHHHHHH-HHhcc-CCchHHHHHHHHHHHHHHHhHhh
Q 041759          180 GISRATIGTCTIVLLTEKVGT-EWRGLVGILDSFFFTIGTLTLPAI-AYTNR-SSSWTIIYLWTSIPTLVYSGLLY  252 (525)
Q Consensus       180 G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~-~~~wr~~f~~~~~~~~~~~~~~~  252 (525)
                      |+|.|..++.+...+.+..++ ++-++..++.+....+=..+||.+ |++-+ ..+|+......+...++..+..+
T Consensus       307 G~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         307 GLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             hCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999887764 344444555555544445567777 44433 45899998888877777664444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.23  E-value=0.00013  Score=69.43  Aligned_cols=145  Identities=17%  Similarity=0.170  Sum_probs=121.2

Q ss_pred             cceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHH
Q 041759          101 LTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS---NNLWIYSLLRF  177 (525)
Q Consensus       101 ~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~r~  177 (525)
                      |.=.+-||+   +..+..-+...+..|.+++....|++..|+.++|+...+++.+.+++..+..++   .+.+.+...-+
T Consensus       233 Pygg~Vfgm---sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~  309 (403)
T PF03209_consen  233 PYGGEVFGM---SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVF  309 (403)
T ss_pred             CchhHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            334567899   999999999999999999999999998854888888888888888777665544   67889999999


Q ss_pred             HHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc-----------cCCchHHHHHHHHHHHHH
Q 041759          178 FSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN-----------RSSSWTIIYLWTSIPTLV  246 (525)
Q Consensus       178 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~-----------~~~~wr~~f~~~~~~~~~  246 (525)
                      +.|++.|.......+...|...+++.|..++.+.....++..++..++..+           ...+|-.+|.+.++..++
T Consensus       310 l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~  389 (403)
T PF03209_consen  310 LLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA  389 (403)
T ss_pred             HHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988888888775432           124577788877777766


Q ss_pred             HH
Q 041759          247 YS  248 (525)
Q Consensus       247 ~~  248 (525)
                      ..
T Consensus       390 a~  391 (403)
T PF03209_consen  390 AL  391 (403)
T ss_pred             HH
Confidence            66

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.19  E-value=0.0033  Score=62.85  Aligned_cols=110  Identities=15%  Similarity=0.113  Sum_probs=73.7

Q ss_pred             hhhhhhHHHHHHH-HHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh---------h----------------
Q 041759          114 AFIKGLPAASHFT-GCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS---------N----------------  167 (525)
Q Consensus       114 ~~~~g~~~s~~~l-g~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~---------~----------------  167 (525)
                      ...+..+-....+ +..+......+++++ ++|.+++-+....+.....+.++.         +                
T Consensus        57 ae~I~flK~~~vlP~a~~f~~~y~kl~n~-~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   57 AEVIPFLKVWGVLPVAILFTILYSKLSNR-LSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            3455555554444 445557788999999 999998887776666555555442         0                


Q ss_pred             ------hHHHHHHHHHHHhhcccchhh-hhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH
Q 041759          168 ------NLWIYSLLRFFSGISRATIGT-CTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI  224 (525)
Q Consensus       168 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l  224 (525)
                            +.|.+.+..++.-+-...... ....+..|.++.+|-.|..+++..+.++|.+++..+
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~  199 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQL  199 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  122333333333333333333 456788999999999999999999999999997766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.11  E-value=5.8e-08  Score=97.97  Aligned_cols=144  Identities=19%  Similarity=0.168  Sum_probs=107.6

Q ss_pred             HHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHH
Q 041759          356 YLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIA  435 (525)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (525)
                      .......+...+    +.++|.++.|++.||+|||+.+.++..+..++.++..+.+..  .++....+.-++.|++.+..
T Consensus        46 ~~~~~~~~~~~~----g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~R~~~G~~~g~~  119 (451)
T PF00083_consen   46 LLSSLLTSSFFI----GAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY--NNFWMLLIGRFLIGFGIGGA  119 (451)
T ss_pred             HHHHHHHHHHHh----hhcccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccc
Confidence            345556666666    888999999999999999999999999999999888887722  12346777888899999999


Q ss_pred             HHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc----c-CchhHHHHHHHHHHHHHHHHHHhccCC
Q 041759          436 YTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG----S-NNEFVSYGVFGLVIICCGFFVICLPET  505 (525)
Q Consensus       436 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (525)
                      .+....++.|..|++.|+...++.+....+|..++..+....    . ..+...+.+.++..++..+..+++||+
T Consensus       120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES  194 (451)
T PF00083_consen  120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES  194 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999888888877776664321    1 123344444444444444445556654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.11  E-value=1.8e-05  Score=65.56  Aligned_cols=107  Identities=16%  Similarity=0.102  Sum_probs=91.5

Q ss_pred             hHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeee
Q 041759          119 LPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKV  198 (525)
Q Consensus       119 ~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  198 (525)
                      .-.++.+....+++++.+.+.++ +|.|+.+++|.+.+.+-.... +-++.+.++.+-++.|++.+..++....++.+..
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s  118 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS  118 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence            34466667777888888999999 999999999999988655443 4577889999999999999999999999999999


Q ss_pred             cCcchhhHHhHHHHHHHHHHHHHHHHHHh
Q 041759          199 GTEWRGLVGILDSFFFTIGTLTLPAIAYT  227 (525)
Q Consensus       199 ~~~~r~~~~~~~~~~~~~G~~l~~~l~~~  227 (525)
                      ++++|++-.+++......+.++|.++.++
T Consensus       119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen  119 TEETIGRNTGIFWAIFQSSLIFGNLFLFF  147 (156)
T ss_pred             CHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888898888877554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.10  E-value=1.9e-06  Score=83.49  Aligned_cols=135  Identities=18%  Similarity=0.161  Sum_probs=116.3

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhhe
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIV  192 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  192 (525)
                      .+...|.....-..|-.+.-++.+++..| +|+-+++.+++.+..+=.+..++.+|.|+.+-.-+++|+..+.++....+
T Consensus       404 ~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~s  482 (618)
T KOG3762|consen  404 IKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIIS  482 (618)
T ss_pred             cceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHH
Confidence            55556666666667777778889999999 99999999999999999999999999999999999999999999999999


Q ss_pred             eeEeeecCcchhhHHhHHHH-HHHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHHH
Q 041759          193 LLTEKVGTEWRGLVGILDSF-FFTIGTLTLPAIA-YTNRSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       193 ~i~~~~~~~~r~~~~~~~~~-~~~~G~~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~  248 (525)
                      |+++..|++-|..+.++.+. ..++|--+|.++| .....++=|..|.+.++.+++.+
T Consensus       483 Y~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l  540 (618)
T KOG3762|consen  483 YASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTL  540 (618)
T ss_pred             HHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHH
Confidence            99999999999999888765 4477888888884 45567788999988888887766

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.05  E-value=4e-05  Score=75.12  Aligned_cols=155  Identities=12%  Similarity=0.055  Sum_probs=105.0

Q ss_pred             cccc--cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHhccccccchhHHHH
Q 041759          347 GIEN--LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNR-KSSLLVLFIISGICSIMAVVANDISNAGKRMRIG  423 (525)
Q Consensus       347 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (525)
                      ++++  .+.+..-.+.+.+...+    +..++.++.++...|.+. |+.++.+.+++.++.+++......++...+++++
T Consensus        60 Yl~~lD~~A~~~ffG~viaa~sl----g~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~  135 (488)
T KOG2325|consen   60 YLQKLDPTATATFFGLVIAASSL----GHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLV  135 (488)
T ss_pred             hhhhcCCCCCcchhhHHHHHHHH----HHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            3444  55566667777787777    888999999999999876 8889999999999999885554443323446666


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHH----hhccC-----------chhHHHHHH
Q 041759          424 LELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLV----AAGSN-----------NEFVSYGVF  488 (525)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~----~~~~~-----------~~~~~~~~~  488 (525)
                      .-++.|++.+. ....-.|+++..-.+.|.++++.......+|.++||.+.    ++...           -+..+-++.
T Consensus       136 ~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m  214 (488)
T KOG2325|consen  136 ARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLM  214 (488)
T ss_pred             HHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHH
Confidence            77777666444 367778888877667788888877776666666666554    32211           134455666


Q ss_pred             HHHHHHHHHH-HHhccCCC
Q 041759          489 GLVIICCGFF-VICLPETR  506 (525)
Q Consensus       489 ~~~~~~~~~~-~~~~~~~~  506 (525)
                      +++.++..++ .++++|..
T Consensus       215 ~i~~i~~~v~i~~~f~E~~  233 (488)
T KOG2325|consen  215 AILWIIYIVIILFFFKEVY  233 (488)
T ss_pred             HHHHHHHHHHHHhheeecc
Confidence            6666666554 34455543

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.99  E-value=0.0079  Score=58.63  Aligned_cols=127  Identities=12%  Similarity=0.022  Sum_probs=87.0

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHH-HHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh---------hh-
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFT-GCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS---------NN-  168 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~l-g~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~---------~~-  168 (525)
                      +-.+++.+.+....+..+.++-+...+ ++.+..++.+++.++ ..|.+++-+.+..+....+++++.         ++ 
T Consensus        46 lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~-lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~  124 (509)
T COG3202          46 LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNI-LTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDP  124 (509)
T ss_pred             HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCH
Confidence            344556665543367778888888888 788889999999999 999999888777777777666653         11 


Q ss_pred             ----------------------HHHHHHHHHHHhhcccchhh-hhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHH
Q 041759          169 ----------------------LWIYSLLRFFSGISRATIGT-CTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIA  225 (525)
Q Consensus       169 ----------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~  225 (525)
                                            .|...+..++.=+=...+.. .......|.+..+|-.|..++++.+.+++..++..+.
T Consensus       125 ~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~  204 (509)
T COG3202         125 EFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVT  204 (509)
T ss_pred             HHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence                                  12222222222222222222 3345567888888999999999999999999977664


Q ss_pred             Hh
Q 041759          226 YT  227 (525)
Q Consensus       226 ~~  227 (525)
                      ..
T Consensus       205 ~~  206 (509)
T COG3202         205 SW  206 (509)
T ss_pred             HH
Confidence            33

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.89  E-value=0.001  Score=62.41  Aligned_cols=149  Identities=13%  Similarity=0.123  Sum_probs=96.5

Q ss_pred             cccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 041759          349 ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELAS  428 (525)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (525)
                      +++|++..+...+......    .+++...+.|.+.||+|||+..+...++..++++.-.. ++     ...+++.-++.
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~----Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-~~-----~~~L~~GRvlg  131 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFA----SSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-SN-----YPVLLLGRVLG  131 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-cc-----cHHHHHHHHHH
Confidence            5688888887777666555    66678888999999999999999999998888864332 22     34677777888


Q ss_pred             HHHHHHHHHHHHhhhc-c----ccCcchhhhhhHHHH-HHHHHHHH----HHHHHHhhccCchhHHHHHHHHHHHHHHHH
Q 041759          429 LFSAYIAYTVIFIYAI-E----LFPTCVRNSATSIMR-LAIIFAAI----FSSVLVAAGSNNEFVSYGVFGLVIICCGFF  498 (525)
Q Consensus       429 ~~~~~~~~~~~~~~~~-~----~~p~~~r~~~~~~~~-~~~~~g~~----~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~  498 (525)
                      |+.....++..-++.. |    -+|++..+...+... ..+.+-++    ++-.+......+...+|.....+.+++.++
T Consensus       132 GiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~  211 (354)
T PF05631_consen  132 GIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVL  211 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            8888887776655543 3    245554455554443 22233333    333333334445677888777777776665


Q ss_pred             HHh-ccCCCC
Q 041759          499 VIC-LPETRG  507 (525)
Q Consensus       499 ~~~-~~~~~~  507 (525)
                      ... .+|+.+
T Consensus       212 I~~~W~ENyg  221 (354)
T PF05631_consen  212 ILKTWPENYG  221 (354)
T ss_pred             HHhcccccCC
Confidence            443 355543

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.89  E-value=0.0025  Score=65.11  Aligned_cols=146  Identities=14%  Similarity=0.035  Sum_probs=112.5

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhh-----------
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNN-----------  168 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~-----------  168 (525)
                      ...+..++|.   +...+.-..+.+.-...+..+.+++++|-.+||-+++.++.++..+|..+..++..           
T Consensus        61 v~ylt~~~~~---~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~  137 (571)
T KOG1237|consen   61 VTYLTLELHA---SGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF  137 (571)
T ss_pred             HHHHHHHhcc---chHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence            4455667777   66777778888888888888999999998679999999999998888665544321           


Q ss_pred             --------------HHHHHHHHHHHhhcccchhhhhheeeEeeec---Cc---chhhHHhHHHHHHHHHHHHHHHH-HHh
Q 041759          169 --------------LWIYSLLRFFSGISRATIGTCTIVLLTEKVG---TE---WRGLVGILDSFFFTIGTLTLPAI-AYT  227 (525)
Q Consensus       169 --------------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~l~~~l-~~~  227 (525)
                                    ...+..+.-+..+|.|+.-+...++-+|-++   ++   .+...+.++....++|..++..+ .+.
T Consensus       138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi  217 (571)
T KOG1237|consen  138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI  217 (571)
T ss_pred             CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence                          1256667778888999999999999999887   22   22356788888999999998777 444


Q ss_pred             ccCCchHHHHHHHHHHHHHHH
Q 041759          228 NRSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       228 ~~~~~wr~~f~~~~~~~~~~~  248 (525)
                      -++.+|.+-|.+..+..++..
T Consensus       218 q~~~~w~lgf~i~~~~~~lai  238 (571)
T KOG1237|consen  218 QDNVGWKLGFGIPTVLNALAI  238 (571)
T ss_pred             hhcccceeeccHHHHHHHHHH
Confidence            467899999988877776665

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.67  E-value=0.0031  Score=60.34  Aligned_cols=55  Identities=18%  Similarity=0.121  Sum_probs=38.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHH
Q 041759          419 RMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVL  473 (525)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i  473 (525)
                      ++.++...+.++..|-..+....++++-+|++.+..+..+....-..|-..|..+
T Consensus       344 ~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~  398 (406)
T KOG1479|consen  344 GWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL  398 (406)
T ss_pred             hHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3667778888888888888889999999988876665555555445554444443

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.57  E-value=0.00027  Score=50.91  Aligned_cols=53  Identities=25%  Similarity=0.298  Sum_probs=47.0

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTM  156 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~  156 (525)
                      +|...++.|+   +..++|.+.++..+...++.+++|.++|| +|+++.++....+.
T Consensus        23 l~~~~~~~Gl---~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   23 LPLYLKQLGL---SPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLFM   75 (77)
T ss_pred             hhHhhhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHHH
Confidence            6677778999   99999999999999999999999999999 99988777665543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.51  E-value=0.0015  Score=68.11  Aligned_cols=148  Identities=11%  Similarity=0.077  Sum_probs=97.8

Q ss_pred             ccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHh-hcChhHHHHHHHHHHHHHHHHHHhccccc---cchhHHHHHH
Q 041759          350 NLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQK-WNRKSSLLVLFIISGICSIMAVVANDISN---AGKRMRIGLE  425 (525)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  425 (525)
                      .++.+...+..+......    ..-+..++++++.|+ +|+++.+.++.++..++.+++.+......   ......++.+
T Consensus        17 ~lg~~~~~A~~i~~~f~~----l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gL   92 (654)
T TIGR00926        17 FLGFSESTSTVLFHTFTY----LCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGL   92 (654)
T ss_pred             HcCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHH
Confidence            356665555544444333    233566788889988 59999999999998888887766432210   1122345556


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCcc---hhhhhhHHHHHHHHHHHHHHHHHHhhcc---------CchhHHHHHHHHHHH
Q 041759          426 LASLFSAYIAYTVIFIYAIELFPTC---VRNSATSIMRLAIIFAAIFSSVLVAAGS---------NNEFVSYGVFGLVII  493 (525)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~~~~~~~~~~g~~~~p~i~~~~~---------~~~~~~~~~~~~~~~  493 (525)
                      .+...+.++.-+...+...|.++++   .+.....+.....++|+++++.+.++..         .++...|.+.+++.+
T Consensus        93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~  172 (654)
T TIGR00926        93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMI  172 (654)
T ss_pred             HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHH
Confidence            6666777777788888888888653   3567777778888999998888876422         135667777777776


Q ss_pred             HHHHHHHh
Q 041759          494 CCGFFVIC  501 (525)
Q Consensus       494 ~~~~~~~~  501 (525)
                      ++.++...
T Consensus       173 ia~lvf~~  180 (654)
T TIGR00926       173 LALIVFMA  180 (654)
T ss_pred             HHHHHHHH
Confidence            66655443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.41  E-value=0.021  Score=56.86  Aligned_cols=148  Identities=9%  Similarity=-0.020  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcccccCC-----hhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHH
Q 041759          325 ERTLALMVPGFGIGVVYYGMTLGIENLGF-----DIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFII  399 (525)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~  399 (525)
                      +.++......++..+.|+.+-..-+.+..     +......+-....+|   ..++..++.+++++|++|++++.+....
T Consensus         7 ~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp---~~~~~~~ly~~l~~~~~~~~lf~~~~~~   83 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVP---MAVIFMLIYTKLSNILSKEALFYTVISP   83 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHH---HHHHHHHHHHHHHhcCCHHHhHHHHHHH
Confidence            34455556666666777776555544433     223333333222221   1113367789999999999988776666


Q ss_pred             HHHHHHHHHHh--ccccc-------------------------cchhHHHHHHHHHHHHHHHHHH-HHHhhhccccCcch
Q 041759          400 SGICSIMAVVA--NDISN-------------------------AGKRMRIGLELASLFSAYIAYT-VIFIYAIELFPTCV  451 (525)
Q Consensus       400 ~~~~~~~~~~~--~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~  451 (525)
                      ....++++.+.  +....                         .+| ...+..+..-.......+ +.|.+++|.+..++
T Consensus        84 F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W-~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q  162 (472)
T TIGR00769        84 FLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIW-SFALFYVMAELWGSVVLSLLFWGFANQITTIDE  162 (472)
T ss_pred             HHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            55555554443  11100                         012 122223333333344444 78999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          452 RNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       452 r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      ..+-.++....+++|.+++|.+...
T Consensus       163 akRfy~l~~~ganlg~i~sg~~~~~  187 (472)
T TIGR00769       163 AKRFYALFGLGANVALIFSGRTIKY  187 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987763

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.40  E-value=0.0052  Score=51.06  Aligned_cols=95  Identities=14%  Similarity=0.035  Sum_probs=77.9

Q ss_pred             hhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhh
Q 041759          375 PSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNS  454 (525)
Q Consensus       375 ~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~  454 (525)
                      ++.++.+.+.+++|.|+.++++.+...+-....... +     ++..+....+.|++.+..|...-.++.+...++.+++
T Consensus        52 ~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~-~-----~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~  125 (156)
T PF05978_consen   52 ISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP-N-----SYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGR  125 (156)
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-h-----HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhh
Confidence            677888999999999999999998888666554432 2     3477888889999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh
Q 041759          455 ATSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       455 ~~~~~~~~~~~g~~~~p~i~~  475 (525)
                      ..++...+...+.++|.++.-
T Consensus       126 ~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen  126 NTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999888888777777766543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.37  E-value=0.0034  Score=62.41  Aligned_cols=120  Identities=17%  Similarity=0.119  Sum_probs=106.5

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhH-hcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLA-TLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFF  178 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G-~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  178 (525)
                      .-.++..|++   ++.+.+...+.......+++++.. .+... +|-|+++.+|++...+..++.+++++.|+++....+
T Consensus       265 ~~yl~~~f~w---~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~  340 (463)
T KOG2816|consen  265 LLYLKAKFGW---NKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVV  340 (463)
T ss_pred             EEEEeeecCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHH
Confidence            3466778899   999999888888888888888877 66666 999999999999999999999999999999999988


Q ss_pred             HhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH
Q 041759          179 SGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI  224 (525)
Q Consensus       179 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l  224 (525)
                      .++... ..|...+.++.+.+++++|++.++......+..+++|.+
T Consensus       341 ~~~~~~-~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~  385 (463)
T KOG2816|consen  341 VALAGI-VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPAL  385 (463)
T ss_pred             HHhhcc-hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHH
Confidence            887755 678888999999999999999999999999999998877

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.30  E-value=0.0052  Score=59.18  Aligned_cols=102  Identities=15%  Similarity=0.139  Sum_probs=64.7

Q ss_pred             cCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccc-cchh--HHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 041759          372 STIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISN-AGKR--MRIGLELASLFSAYIAYTVIFIYAIELFP  448 (525)
Q Consensus       372 ~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  448 (525)
                      ..++..+.+-|+.||+|.|....++..+.+++..+=.......- ....  +......+.+........+..-+..--+|
T Consensus        91 v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~  170 (480)
T KOG2563|consen   91 VSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFP  170 (480)
T ss_pred             HHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCC
Confidence            44488888999999999999999999999998877665533311 1111  22223333333222222222233444589


Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHH
Q 041759          449 TCVRNSATSIMRLAIIFAAIFSSVL  473 (525)
Q Consensus       449 ~~~r~~~~~~~~~~~~~g~~~~p~i  473 (525)
                      +++|+++..+..+.+.+|..++-++
T Consensus       171 ~~qra~A~~~~v~~n~LGvavg~ll  195 (480)
T KOG2563|consen  171 PDQRAIATVLGVMGNPLGVAVGFLL  195 (480)
T ss_pred             cchhhhhhhHHHhcchHHHHHHhhc
Confidence            9999999998888876766655433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.28  E-value=0.0058  Score=60.93  Aligned_cols=154  Identities=13%  Similarity=0.114  Sum_probs=101.6

Q ss_pred             hhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhh-----cChhHHHHHHHHHHHHHHHHHHhccccccchh
Q 041759          345 TLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKW-----NRKSSLLVLFIISGICSIMAVVANDISNAGKR  419 (525)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (525)
                      +++.+++|.++.+...+.++..+|-     ...++.|.++|.+     .||.-++++.++..++.+.+...+.. ..+..
T Consensus        14 ~~l~~~l~ls~~~~~~~~~~~~lPw-----~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~-~~s~~   87 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQRLSSLASLPW-----SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS-ESSAA   87 (433)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhCch-----HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-cchhh
Confidence            4555668999888887777776622     3567889999987     35556666777776666666665542 11233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccCcc--hhhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHH
Q 041759          420 MRIGLELASLFSAYIAYTVIFIYAIELFPTC--VRNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICC  495 (525)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~  495 (525)
                      ...++.++..++........-++..|....+  .++...+.......+|++++..+.|.  ...+....|.+.+.+..+.
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~  167 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM  167 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence            4455666666777777777777888876322  26777888888889999999888874  3344556666666666555


Q ss_pred             HHHHHh-ccC
Q 041759          496 GFFVIC-LPE  504 (525)
Q Consensus       496 ~~~~~~-~~~  504 (525)
                      .+..++ .+|
T Consensus       168 ~~~~~~~~~e  177 (433)
T PF03092_consen  168 LIVALFLLEE  177 (433)
T ss_pred             HHHHHHhhhh
Confidence            544433 444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.22  E-value=0.0017  Score=46.77  Aligned_cols=65  Identities=17%  Similarity=0.160  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHH
Q 041759          332 VPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIIS  400 (525)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~  400 (525)
                      +...+.+..+-+++.+.++.|.+..+.+.+.++..+    ..+++.++.|+++||.++++.......++
T Consensus        11 ~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~----~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   11 FYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPL----IRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            334445555666788899999999999999998888    78899999999999999988777665543

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.11  E-value=0.0024  Score=57.92  Aligned_cols=134  Identities=15%  Similarity=0.033  Sum_probs=86.8

Q ss_pred             hhHHHHHHHHHHHhHHhhHhcccc-cCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEe
Q 041759          118 GLPAASHFTGCLLGIVFLATLADS-SLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTE  196 (525)
Q Consensus       118 g~~~s~~~lg~~~~~~~~G~l~dr-~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  196 (525)
                      |.+.-+-.+-.++..+.+..+.|| +||.|.  .+..++.+.+.++.+++++.++-+.+-.+..++.|.......++-+.
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri--~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~  142 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRI--ALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR  142 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHH--HHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc
Confidence            444444555566666777778888 345554  44556677888889999999999999999999888766655554332


Q ss_pred             eecCcchhhHHhHHHHHHHHHHHHHHHH-HHhcc--CCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          197 KVGTEWRGLVGILDSFFFTIGTLTLPAI-AYTNR--SSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       197 ~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~~~--~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                           +.....+.++.+.+.+.++|..- +.+.+  +.+-|...++...+.++.++..++.++++
T Consensus       143 -----Y~~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p  202 (409)
T KOG3880|consen  143 -----YPSIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP  202 (409)
T ss_pred             -----CCCceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence                 33345556666666666666654 22322  45677777777777766663555555443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.06  E-value=0.0015  Score=64.06  Aligned_cols=105  Identities=13%  Similarity=0.168  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhh---h------HHHHHHHHHHHhhcccchhhhhheeeEeeecCc---chhhHHhHHHHHH
Q 041759          147 NLLFLSCLTMSVATSLTIFSN---N------LWIYSLLRFFSGISRATIGTCTIVLLTEKVGTE---WRGLVGILDSFFF  214 (525)
Q Consensus       147 ~~~~~~~~~~~i~~~~~~~~~---~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  214 (525)
                      |++.++.++..+|.++..++.   +      .+.++++.++.++|.|+.-|...++++|-++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            577888999999988855432   2      367899999999999999999999999998765   5667788999999


Q ss_pred             HHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHh
Q 041759          215 TIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLL  251 (525)
Q Consensus       215 ~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~  251 (525)
                      ++|..+++.+ +++-++.+|.+.|.+.++..++..+..
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f  119 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF  119 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence            9999999877 666678899999999998888776333

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.90  E-value=0.025  Score=54.77  Aligned_cols=112  Identities=19%  Similarity=0.141  Sum_probs=82.7

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHH-----HHHHHHHHhhhhHHHHHHHHHHHhhcccchh
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTM-----SVATSLTIFSNNLWIYSLLRFFSGISRATIG  187 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~-----~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~  187 (525)
                      ...+..+....|.+|-.++.--...+  | +  |++.+.+.+-.     .+...+.-+.++.|..++.-+..|+..|..+
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--r-i--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~Y  353 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPFF--R-I--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASY  353 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceeee--e-h--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHH
Confidence            45677777888888877765433222  3 4  33333333222     1222233346889999999999999999999


Q ss_pred             hhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhcc
Q 041759          188 TCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNR  229 (525)
Q Consensus       188 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~  229 (525)
                      .-....+.|-.++++|..+++....+-++|.+++.+++..++
T Consensus       354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999998899999999999999999999999999887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=96.86  E-value=0.00032  Score=66.47  Aligned_cols=54  Identities=28%  Similarity=0.227  Sum_probs=3.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHH
Q 041759          420 MRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVL  473 (525)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i  473 (525)
                      ..++..++.++..|-..+....+.++..+++.|..+..+....-.+|-.+|..+
T Consensus       250 ~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l  303 (309)
T PF01733_consen  250 WFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL  303 (309)
T ss_dssp             -----------------HHHH---------------------------------
T ss_pred             HHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556677788888888888899999999988888777776666666666555544

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.84  E-value=0.025  Score=55.72  Aligned_cols=126  Identities=15%  Similarity=0.050  Sum_probs=94.3

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHh---h---h----hH
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIF---S---N----NL  169 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~---~---~----~~  169 (525)
                      +......-|+   ++..+|..-+...+....+.+...++.+| +|..|.=++++....+...++..   .   +    +.
T Consensus       281 mt~yl~~~G~---s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~  356 (432)
T PF06963_consen  281 MTAYLKSQGY---SPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISA  356 (432)
T ss_pred             HHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Confidence            3344444588   99999999999999999999999999999 99988877777655444333322   1   2    33


Q ss_pred             HHHHHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhcc
Q 041759          170 WIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNR  229 (525)
Q Consensus       170 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~  229 (525)
                      ..++.+-++.=+|.=+......-++.|..|+++||...+.-....++-.++...++...+
T Consensus       357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~  416 (432)
T PF06963_consen  357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP  416 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            444545555555555566677788999999999999999999999988888777766553

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.49  E-value=0.079  Score=47.48  Aligned_cols=50  Identities=14%  Similarity=0.229  Sum_probs=35.4

Q ss_pred             cchhhHHhHHHHHHHHHHHHHHHHHHhc------cCCchHHHHHHHHHHHHHHHhH
Q 041759          201 EWRGLVGILDSFFFTIGTLTLPAIAYTN------RSSSWTIIYLWTSIPTLVYSGL  250 (525)
Q Consensus       201 ~~r~~~~~~~~~~~~~G~~l~~~l~~~~------~~~~wr~~f~~~~~~~~~~~~~  250 (525)
                      |+|+....+...+.++|.++.-+.-...      ...+|++++.+.+++.++.+++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIl   57 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLIL   57 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888888889999998754331111      1346999999999888877733

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.39  E-value=0.063  Score=50.41  Aligned_cols=112  Identities=16%  Similarity=0.165  Sum_probs=75.1

Q ss_pred             HHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHH
Q 041759          357 LGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAY  436 (525)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (525)
                      ......+...+    +...+.++.|.+.||.|||+.+..+.....++.++..+....   ......+.....+++.+...
T Consensus        40 ~~~~~~~~~~~----~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~  112 (338)
T COG0477          40 LYGLLLSAFFL----GYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNV---GLALLLILRLLQGLGGGGLL  112 (338)
T ss_pred             HHHHHHHHHHH----HHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHhhhHHHH
Confidence            34444444444    444666899999999999977777776544443444443331   12344445555677777888


Q ss_pred             HHHHhhhccccCc-chhhhhhHHHHH-HHHHHHHHHHHHHh
Q 041759          437 TVIFIYAIELFPT-CVRNSATSIMRL-AIIFAAIFSSVLVA  475 (525)
Q Consensus       437 ~~~~~~~~~~~p~-~~r~~~~~~~~~-~~~~g~~~~p~i~~  475 (525)
                      +....+..|..|. +.|+...+.... ...+|..++|.+.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T COG0477         113 PVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAG  153 (338)
T ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999997 567888887777 46777778876655

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.38  E-value=0.00052  Score=69.93  Aligned_cols=130  Identities=12%  Similarity=0.061  Sum_probs=2.4

Q ss_pred             hhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhcccc-------
Q 041759          342 YGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDIS-------  414 (525)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------  414 (525)
                      ..++.+-++++++..+++.+.+...+    +.++..++..++.+|..|-+++..+.++++++.+++.+.....       
T Consensus        24 ~~lttiErRF~l~S~~~G~i~s~~di----~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~   99 (539)
T PF03137_consen   24 SSLTTIERRFGLSSSQSGLISSSYDI----GSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEE   99 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccc
Confidence            33456667789999999999998888    7777777778888888888888889888888887776431100       


Q ss_pred             --------------------------------------ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhh
Q 041759          415 --------------------------------------NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSAT  456 (525)
Q Consensus       415 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~  456 (525)
                                                            ...+..+++..++.|++....+++..+|+-|..+++.-+...
T Consensus       100 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYi  179 (539)
T PF03137_consen  100 ASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYI  179 (539)
T ss_dssp             ----------------------------------------------------SSS-------------------------
T ss_pred             ccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccch
Confidence                                                  001234556667777888888899999999999999988999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 041759          457 SIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       457 ~~~~~~~~~g~~~~p~i~~  475 (525)
                      |+......+|-.+|-++.+
T Consensus       180 Gi~~~~~~lGPa~Gf~lg~  198 (539)
T PF03137_consen  180 GILYAMSILGPALGFLLGS  198 (539)
T ss_dssp             -------------------
T ss_pred             hhhhHHhhccHHHHHHHHH
Confidence            9998888777666555543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.08  E-value=0.024  Score=58.76  Aligned_cols=160  Identities=9%  Similarity=0.040  Sum_probs=114.9

Q ss_pred             hhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccc---c-------
Q 041759          345 TLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDI---S-------  414 (525)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~-------  414 (525)
                      ...-+.++++..+.+.+.+...+    +.++...+..+...|..|-+++-++.++++++.++..+....   +       
T Consensus       121 ttiErRF~i~Ss~sG~I~s~~di----g~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~  196 (735)
T KOG3626|consen  121 TTIERRFKISSSQSGLIASSYDI----GNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVI  196 (735)
T ss_pred             hhhhhhcCCCCCcceeEeeeccc----chhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhh
Confidence            33445578888888888888888    777777888888888888899999999998888877654100   0       


Q ss_pred             ----------------------------------c---cchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhH
Q 041759          415 ----------------------------------N---AGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATS  457 (525)
Q Consensus       415 ----------------------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~  457 (525)
                                                        .   ..|.++++..++.|.+....+++..+|+-|...+++-....|
T Consensus       197 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlg  276 (735)
T KOG3626|consen  197 KQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLG  276 (735)
T ss_pred             hccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHH
Confidence                                              0   023355556666777777777888889999998888889999


Q ss_pred             HHHHHHHHHHHHHHHHHhh------cc--C-------------chhHHHHHHHHHHHHHHHHHHhccCCCCC
Q 041759          458 IMRLAIIFAAIFSSVLVAA------GS--N-------------NEFVSYGVFGLVIICCGFFVICLPETRGS  508 (525)
Q Consensus       458 ~~~~~~~~g~~~~p~i~~~------~~--~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (525)
                      +..++..+|-++|-++.++      +.  .             .++..|++.+.+.++.++.++++|+..++
T Consensus       277 i~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  277 ILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence            9998887777766555542      11  0             14556777788888888878888765544

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.11  Score=51.39  Aligned_cols=110  Identities=15%  Similarity=0.209  Sum_probs=84.5

Q ss_pred             hhhhhhHHHHHHHHHHHhHHhhHhcccc--cCCchHHHHHHHHHHHHHHHHHHhh------------------hhHHHHH
Q 041759          114 AFIKGLPAASHFTGCLLGIVFLATLADS--SLGRKNLLFLSCLTMSVATSLTIFS------------------NNLWIYS  173 (525)
Q Consensus       114 ~~~~g~~~s~~~lg~~~~~~~~G~l~dr--~~Grk~~~~~~~~~~~i~~~~~~~~------------------~~~~~l~  173 (525)
                      ....++-.-...+|..+++.+.+.+.+|  ++||++.+.++.++..++.++.-..                  +++...+
T Consensus       278 ~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~  357 (461)
T KOG3098|consen  278 TYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLAL  357 (461)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHH
Confidence            3444444455556666667777778765  4999999999999988888876543                  2466778


Q ss_pred             HHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH
Q 041759          174 LLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI  224 (525)
Q Consensus       174 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l  224 (525)
                      +.-++.|++-+......+.++.+.. +++|..+.++...-..++..++...
T Consensus       358 ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  358 IIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence            8889999999999999999999988 6778888888888877777765554

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.88  E-value=0.67  Score=45.17  Aligned_cols=125  Identities=13%  Similarity=0.090  Sum_probs=82.3

Q ss_pred             hhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhh
Q 041759          375 PSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNS  454 (525)
Q Consensus       375 ~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~  454 (525)
                      +..+....+.|.++-|++++++.+...+...++.+....     ..+-+.-+..|..... -...++++-...|+++--+
T Consensus        56 ~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv-----~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~  129 (412)
T PF01770_consen   56 AFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSV-----LAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQK  129 (412)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcH-----HHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHH
Confidence            455666788999999999999998888888877776544     3444555555444333 3566677777888887788


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh----hccCchhHHHHHHHHHHHHHHHHHHhccCC
Q 041759          455 ATSIMRLAIIFAAIFSSVLVA----AGSNNEFVSYGVFGLVIICCGFFVICLPET  505 (525)
Q Consensus       455 ~~~~~~~~~~~g~~~~p~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (525)
                      +.+.......+|.+++.+++-    .....+.....+-.....++.++.+++|..
T Consensus       130 vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~  184 (412)
T PF01770_consen  130 VTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMP  184 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            888888777666665555544    344444444444444455555666677643

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=95.71  E-value=0.11  Score=52.94  Aligned_cols=136  Identities=10%  Similarity=-0.018  Sum_probs=78.0

Q ss_pred             cccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHH--HH-HHHHHH----HhhhhH-HHHHHHHHH
Q 041759          107 WGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLT--MS-VATSLT----IFSNNL-WIYSLLRFF  178 (525)
Q Consensus       107 ~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~--~~-i~~~~~----~~~~~~-~~l~~~r~l  178 (525)
                      +|-   +....+.+.+++++|.++|+.++|++.++ .- ++...+-+.+  .+ ++..+.    ++...+ ..++..-++
T Consensus        45 ~G~---s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~-~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  119 (521)
T PRK03612         45 LGD---SVTQFSTVIGLMLFAMGVGALLSKYLLRD-AA-AGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL  119 (521)
T ss_pred             hCc---hHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455   78888999999999999999999988754 33 3322222111  11 111111    111111 223344566


Q ss_pred             HhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHH-HHh-ccCCchHHHHHHHHHHHHHHH
Q 041759          179 SGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAI-AYT-NRSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       179 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l-~~~-~~~~~wr~~f~~~~~~~~~~~  248 (525)
                      .|+..|+..|....+..+.. .++-++..+-......+|.++|.++ +.+ ++..|-....++.+.+.++..
T Consensus       120 ~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        120 IGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            78888888887776655432 2234566777777888888888877 333 334554444444444444433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=95.69  E-value=1.8  Score=43.65  Aligned_cols=148  Identities=14%  Similarity=0.028  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccccc---CChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHH
Q 041759          324 LERTLALMVPGFGIGVVYYGMTLGIENL---GFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIIS  400 (525)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~  400 (525)
                      ++.++...+..++..+.+..+-..-+.+   ..++.....+=....+|   +.++...+-.++.+++++.+++.+.....
T Consensus        23 ~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP---~a~~f~~~y~kl~n~~s~~~lFy~~~~~F   99 (491)
T PF03219_consen   23 LKKFLPLALMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLP---VAILFTILYSKLSNRLSREKLFYIIIIPF   99 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            4455555566666666666553322221   11222222221111111   11255667788999999998887666555


Q ss_pred             HHHHHHHHHh--cccc---c----------------------cchhHHHHHHHHHHHHHHHHHH-HHHhhhccccCcchh
Q 041759          401 GICSIMAVVA--NDIS---N----------------------AGKRMRIGLELASLFSAYIAYT-VIFIYAIELFPTCVR  452 (525)
Q Consensus       401 ~~~~~~~~~~--~~~~---~----------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~r  452 (525)
                      .....++++.  +...   .                      .+| ...+..+..-.......+ ..|.++.|.++.++.
T Consensus       100 ~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~W-t~slfYv~aElwgsvvlSlLFW~fAN~itt~~eA  178 (491)
T PF03219_consen  100 LGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNW-TFSLFYVMAELWGSVVLSLLFWGFANEITTVEEA  178 (491)
T ss_pred             HHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            5555444443  1110   0                      011 111111111111222233 568999999999998


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHh
Q 041759          453 NSATSIMRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       453 ~~~~~~~~~~~~~g~~~~p~i~~  475 (525)
                      .+..++.....++|.++++.+..
T Consensus       179 KRfYpl~g~ganigli~sG~~~~  201 (491)
T PF03219_consen  179 KRFYPLFGLGANIGLIFSGQLTS  201 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988877665

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=95.68  E-value=0.42  Score=44.34  Aligned_cols=98  Identities=16%  Similarity=0.121  Sum_probs=68.2

Q ss_pred             HHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecC--cc
Q 041759          125 FTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGT--EW  202 (525)
Q Consensus       125 ~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~  202 (525)
                      .+......++.+.+..+ +|-|.++.++...+...-. .=+-+.+..++-.-.+.|++.+..+..--+|+++.-.+  ++
T Consensus        68 y~~l~~s~m~~~~~Ir~-~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~  145 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRF-LGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ  145 (390)
T ss_pred             hHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence            34444555666688888 9999999988877664322 22336788899999999999999999988998876543  33


Q ss_pred             h-------------hhHHhHHHHHHHHHHHHHHHH
Q 041759          203 R-------------GLVGILDSFFFTIGTLTLPAI  224 (525)
Q Consensus       203 r-------------~~~~~~~~~~~~~G~~l~~~l  224 (525)
                      |             +..+.+++.+...|..+..++
T Consensus       146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli  180 (390)
T KOG3097|consen  146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI  180 (390)
T ss_pred             hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence            4             234555666666666655544

>PRK03612 spermidine synthase; Provisional

Probab=95.65  E-value=0.51  Score=48.24  Aligned_cols=121  Identities=10%  Similarity=0.050  Sum_probs=59.5

Q ss_pred             cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHH-HH-HHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 041759          351 LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLV-LF-IISGICSIMAVVANDISNAGKRMRIGLELAS  428 (525)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (525)
                      +|.+......+.++...    +..+|+.+++++.++..++....- .. ++..++..++..............+...++.
T Consensus        45 ~G~s~~~~~~ii~~fl~----glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  120 (521)
T PRK03612         45 LGDSVTQFSTVIGLMLF----AMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI  120 (521)
T ss_pred             hCchHHHHHHHHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666666666655    555666666655433222211111 11 1111111111111110000112233444555


Q ss_pred             HHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          429 LFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      ++..|...|...-+..+... +.-+...|-.+..+.+|+++|+++.++
T Consensus       121 ~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~  167 (521)
T PRK03612        121 GLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPF  167 (521)
T ss_pred             HHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHH
Confidence            67777777776665554322 123566777788888888888888773

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.47  E-value=0.67  Score=46.20  Aligned_cols=111  Identities=15%  Similarity=0.104  Sum_probs=79.8

Q ss_pred             hhhhHHHHHHHHHHHhHHhhHhcccccCCch--HHHHHH--HHHHHHHHHHHHh---------hhhHHHHHHHHHHHhhc
Q 041759          116 IKGLPAASHFTGCLLGIVFLATLADSSLGRK--NLLFLS--CLTMSVATSLTIF---------SNNLWIYSLLRFFSGIS  182 (525)
Q Consensus       116 ~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk--~~~~~~--~~~~~i~~~~~~~---------~~~~~~l~~~r~l~G~~  182 (525)
                      ..-++...|.+|-.+|..+..+.. . -++|  .+++.+  =+++.-..++|..         -++-+..++..++.|+.
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~-~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~glt  385 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFM-W-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFS  385 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-e-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHh
Confidence            455777888888888888665431 1 1222  333222  2333333344432         24667778889999999


Q ss_pred             ccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc
Q 041759          183 RATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN  228 (525)
Q Consensus       183 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~  228 (525)
                      .|-....+..+..+..++++|..+..+...+..+|..+|..++.++
T Consensus       386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998886654

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.33  E-value=0.044  Score=53.08  Aligned_cols=142  Identities=11%  Similarity=0.024  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHh----hcChhHHHH-HHHHHHHHHH
Q 041759          331 MVPGFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQK----WNRKSSLLV-LFIISGICSI  405 (525)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~----~g~~~~~~~-~~~~~~~~~~  405 (525)
                      +...++...-..+.+.++++.|.+......+....-+    ..++..++.|..+||    +||||.++. +.....++++
T Consensus        42 ~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi----~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~  117 (498)
T KOG0637|consen   42 AGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPL----SGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLF  117 (498)
T ss_pred             HHHHHHHHHHhccccHHHHHcCCCccccccccccccc----ccceecccccccccccccccccccchHHHhhHHHHHHHh
Confidence            3334444444455566677888887777666665555    555677788888887    677776654 5555666666


Q ss_pred             HHHHhcccc------ccc----h--hHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhh-hhHHHHHHHHHHHHHHHH
Q 041759          406 MAVVANDIS------NAG----K--RMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNS-ATSIMRLAIIFAAIFSSV  472 (525)
Q Consensus       406 ~~~~~~~~~------~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~-~~~~~~~~~~~g~~~~p~  472 (525)
                      ++++.....      ...    +  ...++...+.-+.........-++..++...+.+.+ +++....+..+|+.++-.
T Consensus       118 Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~  197 (498)
T KOG0637|consen  118 LIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYA  197 (498)
T ss_pred             hhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeee
Confidence            666553211      011    1  112222233334444555677788899887777777 888888888888887766


Q ss_pred             HHhh
Q 041759          473 LVAA  476 (525)
Q Consensus       473 i~~~  476 (525)
                      +..+
T Consensus       198 ~g~y  201 (498)
T KOG0637|consen  198 LGSY  201 (498)
T ss_pred             cccc
Confidence            6543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.32  E-value=0.17  Score=49.60  Aligned_cols=112  Identities=11%  Similarity=0.043  Sum_probs=79.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcccc----ccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcc---hhhhhhHHHHHHH
Q 041759          391 SSLLVLFIISGICSIMAVVANDIS----NAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTC---VRNSATSIMRLAI  463 (525)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~~~~~~~~  463 (525)
                      +.+.++.++..++.+++.+.....    +......++.+.+.++|.|+.=|....+..|.++++   .|.+.....+...
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            456778888888888855543321    112235677777888999999999999999998765   4556677777788


Q ss_pred             HHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHHHhc
Q 041759          464 IFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFVICL  502 (525)
Q Consensus       464 ~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (525)
                      ++|+.+++.+.++  ...++...|.+.++..+++.+..+..
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            9999999888875  34678888888888777776655444

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.73  E-value=0.22  Score=48.00  Aligned_cols=113  Identities=15%  Similarity=0.109  Sum_probs=85.5

Q ss_pred             hhhhhhhHHHH-HHHHHHHhHHhhHhcccccCCchHHHHHHHHH--HHHHHHHH------HhhhhHHHHHHHHHHHhhcc
Q 041759          113 SAFIKGLPAAS-HFTGCLLGIVFLATLADSSLGRKNLLFLSCLT--MSVATSLT------IFSNNLWIYSLLRFFSGISR  183 (525)
Q Consensus       113 s~~~~g~~~s~-~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~--~~i~~~~~------~~~~~~~~l~~~r~l~G~~~  183 (525)
                      +++..-++..+ |.+.-.+|.+.+.++-+.  +||...+..+.=  +.-...+|      .+-.+-+++++.-.+.|+..
T Consensus       280 ~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~--~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsn  357 (406)
T KOG1479|consen  280 GDWYALLLVFLSFNVFDLIGSILAALLTWP--DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSN  357 (406)
T ss_pred             chhhHHHHHHHHhHHHHHhhhhhhhcccCC--CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhcc
Confidence            45566666777 999999998888888776  566554443322  22222211      22357788899999999999


Q ss_pred             cchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHh
Q 041759          184 ATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYT  227 (525)
Q Consensus       184 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~  227 (525)
                      |=.......+..+-.+++++..+..+.......|...|.+++++
T Consensus       358 GYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l  401 (406)
T KOG1479|consen  358 GYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV  401 (406)
T ss_pred             chHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            98888888899999999999999999999999999999888765

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=94.63  E-value=0.09  Score=38.32  Aligned_cols=67  Identities=7%  Similarity=0.030  Sum_probs=57.8

Q ss_pred             hhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccc
Q 041759          343 GMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDI  413 (525)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~  413 (525)
                      .+|...++.+++....+.+.+...+    |.++|.+...++.++.++++.+..+.+...+..+.+.+..+.
T Consensus        14 lLP~M~~~~~ls~~~ag~lasaNy~----GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~   80 (85)
T PF06779_consen   14 LLPLMQADGGLSLSQAGWLASANYL----GYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF   80 (85)
T ss_pred             HhHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            4588888999999999999888777    888999999999888888889999999999988888877655

Note that many members are hypothetical proteins.

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=92.40  E-value=5.9  Score=37.87  Aligned_cols=40  Identities=13%  Similarity=0.038  Sum_probs=31.2

Q ss_pred             HHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHH
Q 041759          435 AYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLV  474 (525)
Q Consensus       435 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~  474 (525)
                      .-....-...|..|+..|..+.|+.+..+..-.++.-++.
T Consensus       403 fDlAVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~ilv  442 (503)
T KOG2601|consen  403 FDLAVTQIMQETVPESERCVVFGVQNSLNSALDLLKDILV  442 (503)
T ss_pred             ccHHHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHHhEE
Confidence            3345666778999999999999999999877776655554

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=92.33  E-value=9.5  Score=37.98  Aligned_cols=149  Identities=10%  Similarity=-0.012  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccccCC---hhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHH
Q 041759          324 LERTLALMVPGFGIGVVYYGMTLGIENLGF---DIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIIS  400 (525)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~  400 (525)
                      +...+-..+..++..+.+..+-..-+.+..   ++.....+-...-+|   ++++..++..++.+++.+.+++.......
T Consensus        26 ~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~~~gae~I~FlK~~~vlP---~avif~~iy~kl~~~lt~~~vF~~~~~~F  102 (509)
T COG3202          26 LKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVLP---SAVIFTIIYQKLLNILTREKVFYIILGFF  102 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhheEeecCcchhhHHHHHHHhch---HHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            344455555556666666655443333222   222222222222221   12256667777888888888776655555


Q ss_pred             HHHHHHHHHhcccc------------------c----------cchhHHHHHHHHHHHHHHHHHH-HHHhhhccccCcch
Q 041759          401 GICSIMAVVANDIS------------------N----------AGKRMRIGLELASLFSAYIAYT-VIFIYAIELFPTCV  451 (525)
Q Consensus       401 ~~~~~~~~~~~~~~------------------~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~  451 (525)
                      ...++++++.-.+.                  .          +.| ...+..+..-.-.....+ +.+..+.|+...++
T Consensus       103 ~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~W-s~s~~Yi~aELWgslV~S~lFw~faNeitt~~e  181 (509)
T COG3202         103 LGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEW-SYSLFYIMAELWGSLVLSLLFWQFANEITTIEE  181 (509)
T ss_pred             HHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            55544444332100                  0          012 111222222222222233 67889999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          452 RNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       452 r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      ..+-.++.+...+++.+++..+..+
T Consensus       182 akRFy~lf~l~~ni~lllsg~~~~~  206 (509)
T COG3202         182 AKRFYPLFGLGANISLLLSGEVTSW  206 (509)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999998887777653

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.07  E-value=1.6  Score=39.39  Aligned_cols=131  Identities=12%  Similarity=-0.012  Sum_probs=82.8

Q ss_pred             hhhhHHHHHHHHHHHhHHhhHhcccccCCch--HHHHHHHHHHHHHHHHHHhh----h---hHHHHHHHHHHHhhcccch
Q 041759          116 IKGLPAASHFTGCLLGIVFLATLADSSLGRK--NLLFLSCLTMSVATSLTIFS----N---NLWIYSLLRFFSGISRATI  186 (525)
Q Consensus       116 ~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk--~~~~~~~~~~~i~~~~~~~~----~---~~~~l~~~r~l~G~~~~~~  186 (525)
                      --|.+.+.++++..+|+-+..++..| -..|  ..+.+..++.+....+....    +   +...-+++.++.-.+.|..
T Consensus       283 PhGfiFatFMlASmLGSSla~Rl~s~-s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlf  361 (454)
T KOG4332|consen  283 PHGFIFATFMLASMLGSSLASRLLSR-SSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLF  361 (454)
T ss_pred             CchhHHHHHHHHHHHhhHHHHHHHhc-CCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhc
Confidence            35889999999999999999999888 4443  45556555555544443332    1   1222244555556677788


Q ss_pred             hhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHHH
Q 041759          187 GTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN--RSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       187 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~--~~~~wr~~f~~~~~~~~~~~  248 (525)
                      +|....+=+++.|.+.|...+.++..--++=..++-.. .-.  ...+-|..|-++.....+..
T Consensus       362 wPSimkmRsqyIPEearstimNfFRvPLnifvClvLyn-lh~~~~p~~tr~mf~icS~~~~~a~  424 (454)
T KOG4332|consen  362 WPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN-LHVDAFPTTTRNMFGICSAFLFVAS  424 (454)
T ss_pred             chHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee-cccccCccccchhhhhhHHHHHHHH
Confidence            99999988999999999888877654333222221111 001  12356677777776666554

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=88.74  E-value=0.14  Score=48.50  Aligned_cols=110  Identities=17%  Similarity=0.191  Sum_probs=3.8

Q ss_pred             hHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHH--HHHHHHHHHH----------HhhhhHHHHHHHHHHHhhcccch
Q 041759          119 LPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSC--LTMSVATSLT----------IFSNNLWIYSLLRFFSGISRATI  186 (525)
Q Consensus       119 ~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~--~~~~i~~~~~----------~~~~~~~~l~~~r~l~G~~~~~~  186 (525)
                      .+..+|.++-.+|....++.-=+...+|.++..+.  +++.-..+++          .+.+|-+..++.-++.|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            45678889999988877764211012444333211  2222222222          12345677888899999999999


Q ss_pred             hhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc
Q 041759          187 GTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN  228 (525)
Q Consensus       187 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~  228 (525)
                      ......+..+..++++|..+..+...+..+|..+|..++.++
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~~  307 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFLL  307 (309)
T ss_dssp             -HHHH-------------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998887654

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=86.77  E-value=32  Score=33.36  Aligned_cols=127  Identities=13%  Similarity=0.112  Sum_probs=58.2

Q ss_pred             HHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHH-----hhcChhHHHH-HHHHHHHHHHHHHHhc
Q 041759          338 GVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQ-----KWNRKSSLLV-LFIISGICSIMAVVAN  411 (525)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d-----~~g~~~~~~~-~~~~~~~~~~~~~~~~  411 (525)
                      +... .+|++++.-+.+....+.. ++..-|.     .-.++...++|     |+|||+..++ +..+.+..+..+....
T Consensus        48 GL~~-~iP~lL~ak~vSyt~~a~f-S~ay~P~-----sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v  120 (510)
T KOG3574|consen   48 GLIG-AIPLLLQAKGVSYTSQAIF-SFAYWPF-----SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLV  120 (510)
T ss_pred             hHhh-hhHHHhcCCCcchhhhhhh-hhhhhHH-----HHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCC
Confidence            4444 7799888766654332222 2222111     23456666777     8998875443 4444555555544432


Q ss_pred             ccc----ccchhHHHH--HHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHH
Q 041759          412 DIS----NAGKRMRIG--LELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSS  471 (525)
Q Consensus       412 ~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p  471 (525)
                      +..    ...+...+.  ..++.-+....---..-.++..+..++.-|-+..........|.+++-
T Consensus       121 ~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~  186 (510)
T KOG3574|consen  121 DRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN  186 (510)
T ss_pred             CcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence            210    011111111  222222222222224445555566666655554444444445554443

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=83.92  E-value=17  Score=32.62  Aligned_cols=31  Identities=16%  Similarity=0.097  Sum_probs=20.0

Q ss_pred             HHHHHHHHhhcChhHHHHHHHHHHHHHHHHH
Q 041759          378 FLTFFLIQKWNRKSSLLVLFIISGICSIMAV  408 (525)
Q Consensus       378 ~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~  408 (525)
                      +-+..++.|+..|++.+++.++..+..+...
T Consensus       258 igGk~lAskIS~rtVt~~ggi~Fi~Fgl~~i  288 (294)
T KOG2881|consen  258 IGGKYLASKISVRTVTLIGGILFIIFGLVYI  288 (294)
T ss_pred             hhhHHHhhhheeEEEEEecchhHHHHHHHHH
Confidence            3344677888888877777666655544433

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=82.27  E-value=3.4  Score=38.33  Aligned_cols=113  Identities=14%  Similarity=0.071  Sum_probs=77.4

Q ss_pred             hhhhhhHHHHHHHHHHHhHHhhHhcccccCCch---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhh
Q 041759          114 AFIKGLPAASHFTGCLLGIVFLATLADSSLGRK---NLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCT  190 (525)
Q Consensus       114 ~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk---~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  190 (525)
                      +.|.-|....|.+|..++.-- ..+...  ..-   .++..-.+++.+...+..+.+++|..++.-+.-|+-.|..+.-.
T Consensus       287 ~sqYRwyqvlYQlGVFiSRSS-~~~~~~--p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNT  363 (409)
T KOG3880|consen  287 DSQYRWYQVLYQLGVFISRSS-INLFTM--PYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNT  363 (409)
T ss_pred             hhcchhhheeeeeeEEEEecc-ceEEec--hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHH
Confidence            345667777777664433221 111111  100   11222334455555666778999999999999999988888877


Q ss_pred             heeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhcc
Q 041759          191 IVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNR  229 (525)
Q Consensus       191 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~~  229 (525)
                      .--+.+-.++++|-.+++....+-++|..++.+++.-+.
T Consensus       364 f~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh  402 (409)
T KOG3880|consen  364 FHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH  402 (409)
T ss_pred             HHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence            777777788899999999999999999999888876554

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=82.08  E-value=0.45  Score=42.48  Aligned_cols=45  Identities=18%  Similarity=0.244  Sum_probs=31.4

Q ss_pred             cceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcc---------cccCCchHHH
Q 041759          101 LTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLA---------DSSLGRKNLL  149 (525)
Q Consensus       101 ~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~---------dr~~Grk~~~  149 (525)
                      --+.++.++   ++.....++-+..+.-++..++.|...         || +|||+..
T Consensus        41 llfltqigl---sp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr-~G~~~~w   94 (412)
T KOG4830|consen   41 LLFLTQIGL---SPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDR-IGRRMSW   94 (412)
T ss_pred             HHHHHHhcC---CcchhHHHHHhhHHHHHHhcccccccccccccHHHhhh-hcceeee
Confidence            345566677   777777777777777888888777544         46 8888753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	525
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		4e-04

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 119/297 (40%), Gaps = 35/297 (11%)
Query: 229 RSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLS 288
            +  W  ++    IP L++  LLY  V ESPRWL  +G+QE+A  +++ +     + Q  
Sbjct: 195 NTDGWRYMFASECIPALLFLMLLYT-VPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV 253
Query: 289 LSLVSAVSFGHEPAAXXXXXXXXXXIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGI 348
             +  ++  G +             +         +   L++     GI VV Y      
Sbjct: 254 QEIKHSLDHGRKTGGRLLMFGVGVIV---------IGVMLSIFQQFVGINVVLYYAPEVF 304
Query: 349 ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAV 408
           + LG    + ++   ++ + NL  T+    L    + K+ RK     L II  +   + +
Sbjct: 305 KTLGASTDIALLQTIIVGVINLTFTV----LAIMTVDKFGRKP----LQIIGALGMAIGM 356
Query: 409 VANDISNAGKRMRIGLELASLFSAYIAY------TVIFIYAIELFPTCVRNSATSIMRLA 462
            +   +   +   I   L+ LF  Y+A        V ++   E+FP  +R  A +I   A
Sbjct: 357 FSLGTAFYTQAPGIVALLSMLF--YVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA 414
Query: 463 IIFAAIFSSVLVAAGSNNEFV--------SYGVFGLVIICCGFFV-ICLPETRGSSL 510
              A  F S        N ++        SY ++G + +    F+   +PET+G +L
Sbjct: 415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	525
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	5e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 5e-10
 Identities = 78/551 (14%), Positives = 145/551 (26%), Gaps = 170/551 (30%)

Query: 5   DPSPLLCQSNSCTDDQESSDQRSHKQSISSLDEIVE-QAILVSLASLFDSQQSFISVY-- 61
            PS +        D   + +Q   K ++S L   ++ +  L+ L          + +   
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-----RPAKNVLIDGV 158

Query: 62  -----TEAEPTWHCLNNTTCSSASNICMFP-KSSWAWDGNPTTTALTIISEWGLECSSAF 115
                T        +    C S    C    K  W    N  +    +     L      
Sbjct: 159 LGSGKT-------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQID 210

Query: 116 IKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLL 175
                 + H +   L I        S       L  S         L +   N+      
Sbjct: 211 PNWTSRSDHSSNIKLRI-------HSIQAELRRLLKS---KPYENCLLVLL-NVQNAKAW 259

Query: 176 RFFSGISRATIGTCTIVLLT------EKVGTEWRG---LVGILDSF-----------FFT 215
             F+        +C I+L T      + +         L     +            +  
Sbjct: 260 NAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 216 IGTLTLP---------AIA--------YTNRSSSW---------TIIYLWTSIPTL---- 245
                LP          ++              +W         TII    S+  L    
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLEPAE 370

Query: 246 ---VYSGLLYIFVSES--PR------WLFMQGRQEEAVEVI------KSLSPIKDSNQLS 288
              ++   L +F   +  P       W  +    +  V V+       SL   K   + +
Sbjct: 371 YRKMFD-RLSVFPPSAHIPTILLSLIWFDV---IKSDVMVVVNKLHKYSLV-EKQPKEST 425

Query: 289 LSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGI 348
           +S+                 S    ++      +AL R++   V  + I   +    L  
Sbjct: 426 ISI-------P---------SIYLELKVKLENEYALHRSI---VDHYNIPKTFDSDDLIP 466

Query: 349 ENLGFDIYLGVVFNAL------LEIPNLASTIPSFFLTF-FLIQK-------WNRKSSLL 394
             L  D Y    ++ +      +E P   +     FL F FL QK       WN   S+L
Sbjct: 467 PYL--DQY---FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 395 VLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNS 454
                             +      +    +    +   +   + F+  IE     + + 
Sbjct: 522 NTL-------------QQLKFYKPYIC---DNDPKYERLVNAILDFLPKIE--ENLICSK 563

Query: 455 ATSIMRLAIIF 465
            T ++R+A++ 
Sbjct: 564 YTDLLRIALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 7e-10
 Identities = 52/304 (17%), Positives = 92/304 (30%), Gaps = 108/304 (35%)

Query: 248 SGLLYIFVSESPRWLFMQGRQEEAVE--VIKSL--------SPIK-DSNQLSLSLVSAVS 296
           SG L +F      W  +  +QEE V+  V + L        SPIK +  Q S+     + 
Sbjct: 62  SGTLRLF------WTLLS-KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 297 FGHEPAASSKESSFLSSIRELFVRR----WALERTLALMVPGFGIGVVYYGM------TL 346
              +   +  +        +  V R      L + L  + P   + +   G+       +
Sbjct: 115 Q-RDRLYNDNQV-----FAKYNVSRLQPYLKLRQALLELRPAKNVLI--DGVLGSGKTWV 166

Query: 347 GIE---------NLGFDIY---LGVVF--NALLEI---------PNLAS------TIPSF 377
            ++          + F I+   L        +LE+         PN  S       I   
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 378 FLTF-----FLIQKWNRKSSLLVL-----------FIISGICSIM-----AVVANDISNA 416
             +       L++    ++ LLVL           F +S  C I+       V + +S A
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--CKILLTTRFKQVTDFLSAA 284

Query: 417 GKR------MRIGL---ELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAI-IFA 466
                      + L   E+ SL   Y          ++  P  +     +     + I A
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKY----------LDCRPQDLPREVLTTNPRRLSIIA 334

Query: 467 AIFS 470
               
Sbjct: 335 ESIR 338

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 34/377 (9%), Positives = 107/377 (28%), Gaps = 50/377 (13%)

Query: 143 LGRKNLLFLSCLTMSVATSLT----IFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKV 198
              +  L    +  +            ++++ +  +L F  G  +          +    
Sbjct: 89  SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW 148

Query: 199 GTEWRGLV-GILDSFFFTIGTLTLPAIAY-TNRSSSWTIIYLWTSIPTLVYSGLLYIFVS 256
             + RG +  + +      G +            + W       +   ++ +   +  + 
Sbjct: 149 SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 208

Query: 257 ESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRE 316
           ++P+   +   +E   +                         +   A  + ++    ++ 
Sbjct: 209 DTPQSCGLPPIEEYKNDYPD---------------------DYNEKAEQELTAKQIFMQY 247

Query: 317 LFVRRWALERTLALMVPGFGIGVVYYGMT------LGIENLGFDIYLGVVFNALLEIPNL 370
           +   +        + +    + ++ YG+       L  E   F +        L E   +
Sbjct: 248 VLPNKL----LWYIAIANVFVYLLRYGILDWSPTYL-KEVKHFALDKSSWAYFLYEYAGI 302

Query: 371 ASTIPSFFLTFFLIQK-WNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASL 429
             T+   +++  + +          +  +           A + +       +   +   
Sbjct: 303 PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD-----MICMIVIG 357

Query: 430 FSAYIAYTVIFIYAIELFPTCVRNSATSIMRL-AIIFAAIFSSVLVAA-----GSNNEFV 483
           F  Y    +I ++A+EL P     +A     L   +  ++ +S +V       G +  F+
Sbjct: 358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM 417

Query: 484 SYGVFGLVIICCGFFVI 500
                 ++ +     V+
Sbjct: 418 VMIGGSILAVILLIVVM 434

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	525
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.95
2xut_A	524	Proton/peptide symporter family protein; transport	99.94
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.42
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.33
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.28
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.26
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.25
2xut_A	524	Proton/peptide symporter family protein; transport	99.13
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.03

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=5e-43  Score=355.91  Aligned_cols=428  Identities=18%  Similarity=0.246  Sum_probs=311.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeecccccc-----c
Q 041759           38 IVEQAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLEC-----S  112 (525)
Q Consensus        38 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~-----~  112 (525)
                      ...+.++.+++.++.++|...++.+                                     +|.++++++...     .
T Consensus        10 ~~~i~~~a~lg~~~~Gyd~~~i~~~-------------------------------------~~~~~~~~~~~~~~~~~~   52 (491)
T 4gc0_A           10 IFSITLVATLGGLLFGYDTAVISGT-------------------------------------VESLNTVFVAPQNLSESA   52 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGGT-------------------------------------HHHHHHHHTGGGCCCHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHhcCCCCCCccc
Confidence            3346677889999999999998888                                     888888775422     1


Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHH
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTI------------------FSNNLWIYSL  174 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~------------------~~~~~~~l~~  174 (525)
                      ++.+.|++.+++.+|.++|++++|+++|| +|||++++++.+++.+++++++                  +++|++++++
T Consensus        53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~  131 (491)
T 4gc0_A           53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI  131 (491)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence            45678999999999999999999999999 9999999999999999999998                  4789999999


Q ss_pred             HHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc---------cCCchHHHHHHHHHHHH
Q 041759          175 LRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN---------RSSSWTIIYLWTSIPTL  245 (525)
Q Consensus       175 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~---------~~~~wr~~f~~~~~~~~  245 (525)
                      +|+++|++.|...+..+++++|+.|+++|++..++.+.+..+|.++++.+++..         ....||+.+.+..++.+
T Consensus       132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (491)
T 4gc0_A          132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPAL  211 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhh
Confidence            999999999999999999999999999999999999999999999999886543         23568999988888888


Q ss_pred             HHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHH
Q 041759          246 VYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALE  325 (525)
Q Consensus       246 ~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  325 (525)
                      +.. +..+++||||+|+..+++.+++++.+++... .+  ...++..+..+...+.+   +    .......++.+....
T Consensus       212 ~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~-~~--~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~  280 (491)
T 4gc0_A          212 LFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIMG-NT--LATQAVQEIKHSLDHGR---K----TGGRLLMFGVGVIVI  280 (491)
T ss_dssp             HHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHH---H----HTTHHHHSCCTHHHH
T ss_pred             hhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhcC-Cc--hhHHHHHHHHHHHHhhh---h----hhhHHHHhcccHHHH
Confidence            877 7788999999999999999999888877622 11  11111111100000000   0    012222333443333


Q ss_pred             HHHHHHHHH-HHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHH
Q 041759          326 RTLALMVPG-FGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICS  404 (525)
Q Consensus       326 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~  404 (525)
                      ......+.. .+.....++.+.+.+..+.+............+    ..+++.++++++.||+|||+.++.+.....+++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~  356 (491)
T 4gc0_A          281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGV----INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM  356 (491)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHH----HHHHHHHHHHHHHHhhcCcchhccchHHHHHHH
Confidence            333222222 234445555566666666665554444444444    455899999999999999999999988888887


Q ss_pred             HHHHHhccccccchhHHHHHHHHHHHHHH-HHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc------
Q 041759          405 IMAVVANDISNAGKRMRIGLELASLFSAY-IAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG------  477 (525)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~------  477 (525)
                      +.+..........+ ...+..++...+.. ...++.+.+.+|++|++.|+++.|+.+..++++++++|.+....      
T Consensus       357 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~  435 (491)
T 4gc0_A          357 FSLGTAFYTQAPGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL  435 (491)
T ss_dssp             HHHHHHHHTTCCHH-HHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred             HHHHHHHhcccchH-HHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77665433311222 22333333333323 33467889999999999999999999999999998887766421      


Q ss_pred             --cCchhHHHHHHHHHHHHHHHH-HHhccCCCCCCccchHHHhcc
Q 041759          478 --SNNEFVSYGVFGLVIICCGFF-VICLPETRGSSLCDTIDQREH  519 (525)
Q Consensus       478 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  519 (525)
                        ..+....+++++++++++.++ ++++||||+|+++|+++..|+
T Consensus       436 ~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~  480 (491)
T 4gc0_A          436 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP  480 (491)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence              123445677778777776654 577899999999987765443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=2.1e-38  Score=318.29  Aligned_cols=393  Identities=11%  Similarity=0.001  Sum_probs=305.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      .+..++++.+...++.......                                     .|.+.+++ +   +..+.|++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~-~---s~~~~g~~   67 (451)
T 1pw4_A           29 IFLGIFFGYAAYYLVRKNFALA-------------------------------------MPYLVEQG-F---SRGDLGFA   67 (451)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHH-------------------------------------HHHTTSST-T---CSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHh-c---cHhHHHHH
Confidence            6777778888888888888888                                     89999999 8   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHhhcccchhhhhheeeEe
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIF----SNNLWIYSLLRFFSGISRATIGTCTIVLLTE  196 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  196 (525)
                      .+++.++..++++++|+++|| +|||++++++.++.+++.+++++    ++|++.++++|+++|++.+...+...+++.|
T Consensus        68 ~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~  146 (451)
T 1pw4_A           68 LSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH  146 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHH
Confidence            999999999999999999999 99999999999999999999999    9999999999999999999999999999999


Q ss_pred             eecCcchhhHHhHHHHHHHHHHHHHHHHH-HhccCCc-hHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHH
Q 041759          197 KVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNRSSS-WTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEV  274 (525)
Q Consensus       197 ~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~  274 (525)
                      ++|+++|++++++.+.+..+|.+++|.++ .+....+ ||+.|++.+++.++..++.++++||+|+....+++.+     
T Consensus       147 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  221 (451)
T 1pw4_A          147 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE-----  221 (451)
T ss_dssp             TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT-----
T ss_pred             HCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh-----
Confidence            99999999999999999999999999995 5566677 9999999999888877667778899875321111000     


Q ss_pred             HHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCC
Q 041759          275 IKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIEN-LGF  353 (525)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  353 (525)
                             . +++.+.+   .  +.++.++...   .....++++++|.++...+..++............+.++++ +|.
T Consensus       222 -------~-~~~~~~~---~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  285 (451)
T 1pw4_A          222 -------Y-KNDYPDD---Y--NEKAEQELTA---KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHF  285 (451)
T ss_dssp             -------T-CCC------------------CC---THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCC
T ss_pred             -------h-ccccccc---c--hhhhhccccc---ccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                   0 0000000   0  0000000000   00125678888887777777666666665555566666666 899


Q ss_pred             hhHHHHHHHHHhcccccccCchhHHHHHHHHHhh--cChhHHHHHHHHHH-HHHHHHHHhccccccchhHHHHHHHHHHH
Q 041759          354 DIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKW--NRKSSLLVLFIISG-ICSIMAVVANDISNAGKRMRIGLELASLF  430 (525)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (525)
                      +....+...+...+    +.+++.++.+++.||+  +||+.+.++..+.. ++.+++......   +.....+..++.++
T Consensus       286 ~~~~~~~~~~~~~~----~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~  358 (451)
T 1pw4_A          286 ALDKSSWAYFLYEY----AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG---NPTVDMICMIVIGF  358 (451)
T ss_dssp             CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTT---CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhccc---CHHHHHHHHHHHHH
Confidence            98888888877777    7779999999999999  99998888777666 554444433221   23455566667777


Q ss_pred             HHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHH-HHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHHHhcc
Q 041759          431 SAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIF-AAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFVICLP  503 (525)
Q Consensus       431 ~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (525)
                      +.+...+....+..|.+|++.|+++.|+.+....+ |..++|.+.|.  +..++...+.+.+++.+++.++.++.+
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777788889999999999999999999999999 99999999984  344677778888777777766655543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1.7e-35  Score=295.85  Aligned_cols=365  Identities=12%  Similarity=0.039  Sum_probs=284.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      .+.++++..+..+++.......                                     .|.+++++|+   +..+.|++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~g~---s~~~~g~~   66 (438)
T 3o7q_A           27 PFALLCSLFFLWAVANNLNDIL-------------------------------------LPQFQQAFTL---TNFQAGLI   66 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHSCC---CSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHH-------------------------------------HHHHHHHcCC---CHHHHHHH
Confidence            5667777788888888888888                                     8999999999   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHhhcccchhhhhheeeEee
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLT---IFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEK  197 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  197 (525)
                      .+++.++..++++++|+++|| +|||++++++.++.+++.++.   +++++++.++++|++.|++.+...+...+++.|+
T Consensus        67 ~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~  145 (438)
T 3o7q_A           67 QSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL  145 (438)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHH
Confidence            999999999999999999999 999999999999999999999   8889999999999999999999999999999999


Q ss_pred             ecCcchhhHHhHHHHHHHHHHHHHHHHH-Hhc-cCCc-------------------------hHHHHHHHHHHHHHHHhH
Q 041759          198 VGTEWRGLVGILDSFFFTIGTLTLPAIA-YTN-RSSS-------------------------WTIIYLWTSIPTLVYSGL  250 (525)
Q Consensus       198 ~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~-~~~~-------------------------wr~~f~~~~~~~~~~~~~  250 (525)
                      +|+++|++++++.+.+.++|.+++|.++ .+. ...+                         ||+.|++.+++.++..++
T Consensus       146 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  225 (438)
T 3o7q_A          146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL  225 (438)
T ss_dssp             SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999994 444 3333                         999998887777666533


Q ss_pred             hh-eeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHH
Q 041759          251 LY-IFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLA  329 (525)
Q Consensus       251 ~~-~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  329 (525)
                      .+ ...||+++.     +              +++               +     ++.+...++++++++|.++...+.
T Consensus       226 ~~~~~~p~~~~~-----~--------------~~~---------------~-----~~~~~~~~~~~~~~~~~~~~~~~~  266 (438)
T 3o7q_A          226 IMLTKFPALQSD-----N--------------HSD---------------A-----KQGSFSASLSRLARIRHWRWAVLA  266 (438)
T ss_dssp             HHHCCCCCCTTT-----C--------------CCC---------------S-----STTSHHHHHHHHTTCSHHHHHHHH
T ss_pred             HHHHcCCccccc-----c--------------ccc---------------c-----cccchhhhHHHHHhChHHHHHHHH
Confidence            32 223443210     0              000               0     000011467888999987777766


Q ss_pred             HHHHHHHHHHHHhhhhhc-ccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHH
Q 041759          330 LMVPGFGIGVVYYGMTLG-IEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMA  407 (525)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~  407 (525)
                      .++............+.+ .++ +|.+....+...+...+    +.+++.++.+++.||++||+.+.++.++..++.+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~  342 (438)
T 3o7q_A          267 QFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMV----CFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS  342 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH----HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            666555554444444555 555 58888888888877777    777999999999999999999999998888887776


Q ss_pred             HHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCc-hhHH
Q 041759          408 VVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNN-EFVS  484 (525)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~-~~~~  484 (525)
                      .+.+..      ......++.+++.+..++..+++..|.+|++ ++.+.++.. ...+|+.++|.+.|.  +..+ ....
T Consensus       343 ~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~  414 (438)
T 3o7q_A          343 AFAGGH------VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA  414 (438)
T ss_dssp             HHCCHH------HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGG
T ss_pred             HHcCCc------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            665433      2344456677888888899999999999976 788888777 667999999999984  2223 5555


Q ss_pred             HHHHHHHHHHHHH
Q 041759          485 YGVFGLVIICCGF  497 (525)
Q Consensus       485 ~~~~~~~~~~~~~  497 (525)
                      +.+.+++.++..+
T Consensus       415 ~~~~~~~~~~~~~  427 (438)
T 3o7q_A          415 ELIPALCFAVIFI  427 (438)
T ss_dssp             GHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6655444444333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=2.1e-33  Score=274.80  Aligned_cols=342  Identities=12%  Similarity=0.056  Sum_probs=269.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhHH
Q 041759           42 AILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPA  121 (525)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~~  121 (525)
                      +.++++..+...++.......                                     +|.+.+++|.   +..+.|++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~g~---s~~~~g~~~   41 (375)
T 2gfp_A            2 LLMLVLLVAVGQMAQTIYIPA-------------------------------------IADMARDLNV---REGAVQSVM   41 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHTTSSS---TTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhh-------------------------------------hHHHHHHcCC---CHHHHHHHH
Confidence            356677778888888877777                                     8999999999   999999999


Q ss_pred             HHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecCc
Q 041759          122 ASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTE  201 (525)
Q Consensus       122 s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  201 (525)
                      +.+.++..+++++.|+++|| +|||+++.++.++.+++.++.+++++++.+++.|++.|++.+...+...+++.|++|++
T Consensus        42 ~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  120 (375)
T 2gfp_A           42 GAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT  120 (375)
T ss_dssp             HHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH
Confidence            99999999999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHhHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCC
Q 041759          202 WRGLVGILDSFFFTIGTLTLPAIAYT-NRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSP  280 (525)
Q Consensus       202 ~r~~~~~~~~~~~~~G~~l~~~l~~~-~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~  280 (525)
                      +|++++++.+.+..+|.+++|.++.. .+..+||+.|++.++..++..++..+++||+++..                  
T Consensus       121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  182 (375)
T 2gfp_A          121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD------------------  182 (375)
T ss_dssp             SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC------------------
Confidence            99999999999999999999999554 44569999999999988888755677788865310                  


Q ss_pred             CcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCChhHHHH
Q 041759          281 IKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIEN-LGFDIYLGV  359 (525)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  359 (525)
                       +++              +    +.     ..++++++++|.++...+..++............|.+.++ .|.+....+
T Consensus       183 -~~~--------------~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g  238 (375)
T 2gfp_A          183 -APR--------------T----RL-----LTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVS  238 (375)
T ss_dssp             -CCC--------------C----CT-----TTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHH
T ss_pred             -ccc--------------c----cH-----HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence             000              0    00     0355677888887776666666666665555666777666 788877777


Q ss_pred             HHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHH-HHHHHH--HHHHhccccccchhHHHHHHHHHHHHHHHHH
Q 041759          360 VFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFII-SGICSI--MAVVANDISNAGKRMRIGLELASLFSAYIAY  436 (525)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (525)
                      .......+    +.+++.++.+++.||.+++  ...+... ...+..  ........   +.....+..++.+++.+...
T Consensus       239 ~~~~~~~~----~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~  309 (375)
T 2gfp_A          239 ILFILPIP----AAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVM---NVWTLLVPAALFFFGAGMLF  309 (375)
T ss_dssp             HHHHTHHH----HHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHH---HHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccc---cHHHHHHHHHHHHHHHHHhh
Confidence            77776666    7778888888888888762  2233222 222222  11111111   23345566677778888888


Q ss_pred             HHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          437 TVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       437 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      +....+..|..| ++|+++.|+.+....+|..++|.+.+.
T Consensus       310 ~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~  348 (375)
T 2gfp_A          310 PLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM  348 (375)
T ss_dssp             STTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred             HHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999998 789999999999999999999988875

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=1.1e-30  Score=265.08  Aligned_cols=381  Identities=11%  Similarity=0.049  Sum_probs=245.2

Q ss_pred             eeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccC-CchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 041759          104 ISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSL-GRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGIS  182 (525)
Q Consensus       104 ~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~-Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~  182 (525)
                      ++|+|+   +..+.|++.+++.++..++++++|+++|| + |||+++.++.++.+++.+++++++|++.++++|+++|++
T Consensus        46 ~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  121 (491)
T 4aps_A           46 TGDLHI---TRATAASIMAIYASMVYLSGTIGGFVADR-IIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIG  121 (491)
T ss_dssp             HTSCCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHH
T ss_pred             hhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            344999   99999999999999999999999999998 7 999999999999999999999999999999999999999


Q ss_pred             ccchhhhhheeeEeeecCcc--hhhHHhHHHHHHHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHHHhHhheeecCCc
Q 041759          183 RATIGTCTIVLLTEKVGTEW--RGLVGILDSFFFTIGTLTLPAIA-YTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESP  259 (525)
Q Consensus       183 ~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp  259 (525)
                      .+...+...+++.|++|+++  |+.++++++.+.++|.+++|.++ .+.+..+||+.|++.++..++..++..+..|+..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4aps_A          122 TGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTL  201 (491)
T ss_dssp             HHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            99999999999999999988  77788889999999999999984 5555689999999988777766633333323211


Q ss_pred             h----HhhhcCCHHHHHHHHHhh--------------CCCcCCccchhhhhh--h----------ccCCCCccccccccc
Q 041759          260 R----WLFMQGRQEEAVEVIKSL--------------SPIKDSNQLSLSLVS--A----------VSFGHEPAASSKESS  309 (525)
Q Consensus       260 ~----~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~  309 (525)
                      +    ....+.+.++.++..+..              .. .+..+..+....  .          ....++..       
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  273 (491)
T 4aps_A          202 DPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNL-VGWNSLPAYINLLTIVAIAIPVFYFAWMISSVK-------  273 (491)
T ss_dssp             CSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHH-HSSCCTTHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             cccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHh-ccCcccccchhhhhHHHHHHHHHHHHHHhhccc-------
Confidence            0    000111222222211110              00 000000000000  0          00000000       


Q ss_pred             chhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhc
Q 041759          310 FLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWN  388 (525)
Q Consensus       310 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g  388 (525)
                        ....+..+........+.....+.........++.+.++ .+.+....+.......+    +.+++.++.+++.||++
T Consensus       274 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~r~~  347 (491)
T 4aps_A          274 --VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPL----FIMLYTPFFAWLWTAWK  347 (491)
T ss_dssp             ----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHH----HHHHHHHHHHHHHHHTT
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchH----HHHHHHHHHHHHHHHHh
Confidence              000000011111222222222222222222233333332 33332222222222222    44478888999999999


Q ss_pred             ChhHHH-----HHHHHHHHHHHHHHHhcc----ccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHH
Q 041759          389 RKSSLL-----VLFIISGICSIMAVVAND----ISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIM  459 (525)
Q Consensus       389 ~~~~~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~  459 (525)
                      ||+...     .+..+.+++.+++.....    ....++....+..++.+++.+...+....++.|.+|++.|+++.|+.
T Consensus       348 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  427 (491)
T 4aps_A          348 KNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMW  427 (491)
T ss_dssp             TC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHH
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH
Confidence            886544     666666666655554320    00113445666777778888887888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh-ccCchhHHHHHHHHHHHHHHHHHHhc
Q 041759          460 RLAIIFAAIFSSVLVAA-GSNNEFVSYGVFGLVIICCGFFVICL  502 (525)
Q Consensus       460 ~~~~~~g~~~~p~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (525)
                      +....+|..++|.+.+. .+.+....+.+++++.+++.++.++.
T Consensus       428 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (491)
T 4aps_A          428 FLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFL  471 (491)
T ss_dssp             HHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999985 33456677777777777666655444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.95  E-value=1.4e-27  Score=236.41  Aligned_cols=362  Identities=16%  Similarity=0.073  Sum_probs=227.0

Q ss_pred             ccc-eeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHH---HHHhhhhHH-HHHH
Q 041759          100 ALT-IISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATS---LTIFSNNLW-IYSL  174 (525)
Q Consensus       100 ~~~-i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~---~~~~~~~~~-~l~~  174 (525)
                      +|. +++++|+   +..+.|++.+.+.++..++++++|+++|| +|||++++++..+++++..   ...+++... .++.
T Consensus        30 ~~~~l~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (417)
T 2cfq_A           30 FPIWLHDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV  105 (417)
T ss_dssp             HHHHHHTTTCC---CTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCH
T ss_pred             HHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444 5667999   99999999999999999999999999999 9999999998887765322   122332221 2455


Q ss_pred             HHHHHhhcccchhhhhheeeEeeecC--cchhhHHhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhHhh
Q 041759          175 LRFFSGISRATIGTCTIVLLTEKVGT--EWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLY  252 (525)
Q Consensus       175 ~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~~f~~~~~~~~~~~~~~~  252 (525)
                      .+++.|++.+...+.....+.++.++  ++|+...+....+..+|..++|.++..+.+.+||+.|++.++..++.. +..
T Consensus       106 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~-~~~  184 (417)
T 2cfq_A          106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA-VLL  184 (417)
T ss_dssp             HHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHH-HHS
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH-HHH
Confidence            67777776665555444444444443  345666777777778888899888554444689999998877765554 344


Q ss_pred             eeec-CCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHH
Q 041759          253 IFVS-ESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALM  331 (525)
Q Consensus       253 ~~lp-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  331 (525)
                      ++.+ |+++    +.+            . .++.           + ++.+     +.....+++++++|.++...+..+
T Consensus       185 ~~~~~~~~~----~~~------------~-~~~~-----------~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  230 (417)
T 2cfq_A          185 FFAKTDAPS----SAT------------V-ANAV-----------G-ANHS-----AFSLKLALELFRQPKLWFLSLYVI  230 (417)
T ss_dssp             CSSCCCCSC----SSC------------S-SSSS-----------S-SCCC-----CCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHcCccccc----ccc------------c-cccc-----------c-cccc-----cccHHHHHHHhcCCchhhHHHHHH
Confidence            4444 3321    000            0 0000           0 0000     000135567888888665554433


Q ss_pred             HHHHHHHHHHhhhhhcccc-cC---ChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHH
Q 041759          332 VPGFGIGVVYYGMTLGIEN-LG---FDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMA  407 (525)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~  407 (525)
                      .............|.++.+ ++   .+....+...++..+    +.+++.++.+++.||+|||+.+..+..+.++..+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~  306 (417)
T 2cfq_A          231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGEL----LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS  306 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHH----HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence            3322222211123333222 22   222333344444333    555889999999999999999988887777765555


Q ss_pred             HHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHH-HHHHHHHHHHHHHHHhh--ccCchhHH
Q 041759          408 VVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIM-RLAIIFAAIFSSVLVAA--GSNNEFVS  484 (525)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~-~~~~~~g~~~~p~i~~~--~~~~~~~~  484 (525)
                      ....+     ....++..++.+++.+...+..+.+..|.+|++.|+++.++. +....+|+.++|.+.|.  +..++...
T Consensus       307 ~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~  381 (417)
T 2cfq_A          307 SFATS-----ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA  381 (417)
T ss_dssp             TTCCS-----HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHH
T ss_pred             HHhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHH
Confidence            43322     223444444555555555666788999999999999999984 77788999999999985  22345666


Q ss_pred             HHHHHHHHHHHHHHHHh-ccCCCCCC
Q 041759          485 YGVFGLVIICCGFFVIC-LPETRGSS  509 (525)
Q Consensus       485 ~~~~~~~~~~~~~~~~~-~~~~~~~~  509 (525)
                      |.+.+++.+++.++.+. .+|+++.+
T Consensus       382 f~~~~~~~l~~~~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          382 YLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCCchH
Confidence            77777777776665443 45544433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.94  E-value=1.3e-26  Score=237.03  Aligned_cols=147  Identities=10%  Similarity=0.081  Sum_probs=132.2

Q ss_pred             cceeeccc------cccchhhhhhhHHHHHHHHHHHhHHhhHhcccccC-CchHHHHHHHHHHHHHHHHHHhhh-hHHHH
Q 041759          101 LTIISEWG------LECSSAFIKGLPAASHFTGCLLGIVFLATLADSSL-GRKNLLFLSCLTMSVATSLTIFSN-NLWIY  172 (525)
Q Consensus       101 ~~i~~~~~------~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~-Grk~~~~~~~~~~~i~~~~~~~~~-~~~~l  172 (525)
                      +.+.+++|      +   +..+.|++.+++.++..++++++|+++|| + |||+++.++.++.+++.++.++++ +++.+
T Consensus        37 ~~l~~~~~~~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (524)
T 2xut_A           37 PFLMTALLLSIPEEL---RGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGHAFLAIFEHSVQGF  112 (524)
T ss_dssp             HHHHHSCSSCCSSST---TTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred             HHHHHHhcccccccc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            34566777      8   99999999999999999999999999999 9 999999999999999999999999 99999


Q ss_pred             HHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhH---HHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHH
Q 041759          173 SLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGIL---DSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYS  248 (525)
Q Consensus       173 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~  248 (525)
                      ++.|++.|++.+...+...+++.|++|+++|+++.+.   .+.+.++|.+++|.+ +.+....+||+.|++.+++.++..
T Consensus       113 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~  192 (524)
T 2xut_A          113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVAT  192 (524)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999876666   899999999999998 555566899999999888877666


Q ss_pred             hHh
Q 041759          249 GLL  251 (525)
Q Consensus       249 ~~~  251 (525)
                      ++.
T Consensus       193 ~~~  195 (524)
T 2xut_A          193 VFF  195 (524)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.42  E-value=1.3e-12  Score=130.26  Aligned_cols=148  Identities=14%  Similarity=0.060  Sum_probs=127.7

Q ss_pred             ccceeec-cccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccC--CchHHHHHHHHHHH-HHHHHHHhh--hhHHHHH
Q 041759          100 ALTIISE-WGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSL--GRKNLLFLSCLTMS-VATSLTIFS--NNLWIYS  173 (525)
Q Consensus       100 ~~~i~~~-~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~--Grk~~~~~~~~~~~-i~~~~~~~~--~~~~~l~  173 (525)
                      .|.+.++ +|.   +..+.+++.+...++..++.++.|++.|| +  |||+.+.++.++.. ++.++..+.  .+.+.+.
T Consensus       275 ~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (451)
T 1pw4_A          275 SPTYLKEVKHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM  350 (451)
T ss_dssp             HHHHBTTBSCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred             HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence            3444444 899   99999999999999999999999999999 9  99999888887776 666666665  4788888


Q ss_pred             HHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHH-HHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHh
Q 041759          174 LLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTI-GTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLL  251 (525)
Q Consensus       174 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~  251 (525)
                      +..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+ +.+.+..||+..|++.+++.++..++.
T Consensus       351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  430 (451)
T 1pw4_A          351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  430 (451)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            8899999999988888889999999999999999999999999 99999988 666777899999999888887776333

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.33  E-value=2.7e-11  Score=120.27  Aligned_cols=133  Identities=9%  Similarity=-0.013  Sum_probs=112.6

Q ss_pred             HHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccc
Q 041759          338 GVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAG  417 (525)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (525)
                      .......|.+.+++|.+..+.+.+.+...+    +.+++.++.|++.||+|||+.+.++.++.+++.++.......  .+
T Consensus        43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~----~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~  116 (438)
T 3o7q_A           43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYF----GYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--MN  116 (438)
T ss_dssp             HHHHHHHHHHHHHSCCCSHHHHHHHHHHHH----HHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred             HhHHHHHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc--cc
Confidence            344455677788899999999988888888    778999999999999999999999999999988887332111  12


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759          418 KRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA  476 (525)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~  476 (525)
                      ....++..++.+++.+...+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.
T Consensus       117 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  175 (438)
T 3o7q_A          117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788899999999999999999999999999999999999999999999999874

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.28  E-value=8.5e-12  Score=123.03  Aligned_cols=146  Identities=14%  Similarity=0.130  Sum_probs=122.8

Q ss_pred             hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhhe
Q 041759          113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIV  192 (525)
Q Consensus       113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  192 (525)
                      +....++..++..++..++.++.|+++|| +|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567888888888999999999999999 99999999999888888888888888888888888888887777777788


Q ss_pred             eeEeeecCcchhhHHhH-HHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCCc
Q 041759          193 LLTEKVGTEWRGLVGIL-DSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESP  259 (525)
Q Consensus       193 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp  259 (525)
                      ++.|.+|++.|++..++ ++....+|.+++|.+ +.+.+..|++..|.+.+++.++..++.+++.||.+
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            99999999999999888 478888999999988 55556678999999988888877755566667654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.26  E-value=7.8e-11  Score=118.83  Aligned_cols=141  Identities=11%  Similarity=0.072  Sum_probs=116.9

Q ss_pred             cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHh-hcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 041759          351 LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQK-WNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASL  429 (525)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (525)
                      +|.+....+.+.+...+    +..++.++.|+++|| +|||+++..+.++..++.++.....+.     ...++..++.+
T Consensus        49 ~~~s~~~~~~~~~~~~~----~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~g  119 (491)
T 4aps_A           49 LHITRATAASIMAIYAS----MVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGA-----SALFGSIILII  119 (491)
T ss_dssp             CCSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCST-----THHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHH
Confidence            89999998888888888    888999999999999 899999999999999888887765443     46677788888


Q ss_pred             HHHHHHHHHHHhhhccccCcch--hhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHHH
Q 041759          430 FSAYIAYTVIFIYAIELFPTCV--RNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFVI  500 (525)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~p~~~--r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~  500 (525)
                      ++.+...+...+++.|.+|++.  |+.+.++.+....+|..++|.+.+.  ...++...|.+.++..+++.++.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          120 IGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988  7778888889999999999999985  334677777777666665555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.25  E-value=6.1e-11  Score=115.09  Aligned_cols=165  Identities=12%  Similarity=0.091  Sum_probs=130.8

Q ss_pred             HHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccc
Q 041759          334 GFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDI  413 (525)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~  413 (525)
                      ...........+.+.+++|.+..+.+...+...+    +..++.++.|++.||+|||+.+..+..+..++.++....++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~----~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   88 (375)
T 2gfp_A           13 QMAQTIYIPAIADMARDLNVREGAVQSVMGAYLL----TYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL   88 (375)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHH----HHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH
Confidence            3334444455677788899999988888888887    777999999999999999999999999999998888776543


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhccC--chhHHHHHHHHH
Q 041759          414 SNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSN--NEFVSYGVFGLV  491 (525)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~~~--~~~~~~~~~~~~  491 (525)
                           ...++..++.+++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+....  ++...+.+.+++
T Consensus        89 -----~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  163 (375)
T 2gfp_A           89 -----TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL  163 (375)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence                 4667778888899898999999999999999999999999999999999999999986433  455666666666


Q ss_pred             HHHHHH-HHHhccCCCC
Q 041759          492 IICCGF-FVICLPETRG  507 (525)
Q Consensus       492 ~~~~~~-~~~~~~~~~~  507 (525)
                      .++..+ ..+.+||+++
T Consensus       164 ~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          164 CAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHCCCCCSSCCCST
T ss_pred             HHHHHHHHHHHCcccCC
Confidence            555544 3344565543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.13  E-value=6.5e-10  Score=113.05  Aligned_cols=167  Identities=10%  Similarity=0.064  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHHhhh-hhcccccC------ChhHHHHHHHHHhcccccccCchhHHHHHHHHHhh-cChhHHHHHHH
Q 041759          327 TLALMVPGFGIGVVYYGM-TLGIENLG------FDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKW-NRKSSLLVLFI  398 (525)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-g~~~~~~~~~~  398 (525)
                      .+..++..+........+ +++.+++|      .+....+.+.+...+    +.+++.++.|+++||+ |||+.+.++.+
T Consensus        18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~----~~~~~~~~~G~l~dr~~g~r~~~~~~~~   93 (524)
T 2xut_A           18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVI----GVYFFPLLGGWIADRFFGKYNTILWLSL   93 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHH----HHHHTHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            333333333333333333 34445677      888888888887777    7778999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHH---HHHHHHHHHHHHHHHHh
Q 041759          399 ISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSI---MRLAIIFAAIFSSVLVA  475 (525)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~---~~~~~~~g~~~~p~i~~  475 (525)
                      +..++.++..+....    ....++..++.+++.+...+...+++.|.+|++.|++..+.   .+....+|..++|.+.+
T Consensus        94 ~~~~~~~~~~~~~~~----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~  169 (524)
T 2xut_A           94 IYCVGHAFLAIFEHS----VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP  169 (524)
T ss_dssp             HHHHHHHHHHHTSSC----HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHhccc----HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888887776512    34566777888888888899999999999999999776666   78888999999999887


Q ss_pred             h--ccCchhHHHHHHHHHHHHHHHHHHh
Q 041759          476 A--GSNNEFVSYGVFGLVIICCGFFVIC  501 (525)
Q Consensus       476 ~--~~~~~~~~~~~~~~~~~~~~~~~~~  501 (525)
                      .  ...++...|.+.+++.+++.+..++
T Consensus       170 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          170 LLLKNFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            4  3346677777777766655554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.03  E-value=1.2e-09  Score=110.09  Aligned_cols=155  Identities=17%  Similarity=0.087  Sum_probs=113.8

Q ss_pred             ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh-----hhHHHHH-
Q 041759          100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS-----NNLWIYS-  173 (525)
Q Consensus       100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~-----~~~~~l~-  173 (525)
                      .+.+.++.+.   +............+...++.++.+++.|| +|||+.++.+....+++.+..+..     ++...++ 
T Consensus       300 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  375 (491)
T 4gc0_A          300 APEVFKTLGA---STDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS  375 (491)
T ss_dssp             HHHHHHHSSC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             chHHHHhcCC---CccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            4566666676   66666777777888899999999999999 999999999988888877765543     1222222 


Q ss_pred             HHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc-------cCCchHHHHHHHHHHHHH
Q 041759          174 LLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN-------RSSSWTIIYLWTSIPTLV  246 (525)
Q Consensus       174 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~-------~~~~wr~~f~~~~~~~~~  246 (525)
                      +.-+..+++.+ ..+....+.+|.+|.+.|+++.++......+|.++++.+...+       ...++.+.|++.++++++
T Consensus       376 ~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~  454 (491)
T 4gc0_A          376 MLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL  454 (491)
T ss_dssp             HHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            22223333333 4466778899999999999999999999988888877653222       223566678888888888


Q ss_pred             HHhHhheeecCCc
Q 041759          247 YSGLLYIFVSESP  259 (525)
Q Consensus       247 ~~~~~~~~lpesp  259 (525)
                      ..++.++++|||.
T Consensus       455 ~~i~~~~~~PETk  467 (491)
T 4gc0_A          455 AALFMWKFVPETK  467 (491)
T ss_dssp             HHHHHHHHCCCCT
T ss_pred             HHHHHHheecCCC
Confidence            8877888999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	525
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-11

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 63.5 bits (153), Expect = 2e-11
 Identities = 44/417 (10%), Positives = 120/417 (28%), Gaps = 36/417 (8%)

Query: 93  DGNPTTTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLS 152
                  A+  + E G    S    G   +            + +++D     +  L   
Sbjct: 40  VRKNFALAMPYLVEQGF---SRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAG 95

Query: 153 CLTMSVAT----SLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGI 208
            +  +        +   ++++ +  +L F  G  +          +      + RG +  
Sbjct: 96  LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVS 155

Query: 209 LDSFFFTIGTLTLPAI--AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQG 266
           + +    +G    P +        + W       +   ++ +   +  + ++P+   +  
Sbjct: 156 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP 215

Query: 267 RQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALER 326
            +E   +                              + K    L++ +         + 
Sbjct: 216 IEEYKNDYPD-------------------------DYNEKAEQELTAKQIFMQYVLPNKL 250

Query: 327 TLALMVPGFGIGVVYYGMTLGIENLGFDIY-LGVVFNALLEIPNLASTIPSFFLTFFLIQ 385
              + +    + ++ YG+         ++    +  ++        + IP   L  ++  
Sbjct: 251 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD 310

Query: 386 KWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIE 445
           K  R +          + +I  +V          + +   +   F  Y    +I ++A+E
Sbjct: 311 KVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE 370

Query: 446 LFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSNNEFVSYGVFGLVIICCGFFVICL 502
           L P     +A     L        ++  +   + + F   G F ++I      VI L
Sbjct: 371 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 427

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	525
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.46
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.26

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-37  Score=305.44  Aligned_cols=395  Identities=12%  Similarity=0.010  Sum_probs=286.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759           41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP  120 (525)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~  120 (525)
                      ++..++++++...++...++.+                                     .|.++ |+|+   |..+.|++
T Consensus        26 i~~~~~~~~~~~~~~~~~~~~~-------------------------------------~p~~~-~~g~---s~~~~g~~   64 (447)
T d1pw4a_          26 IFLGIFFGYAAYYLVRKNFALA-------------------------------------MPYLV-EQGF---SRGDLGFA   64 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHH-------------------------------------HHHTT-SSTT---CSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHH-HhCc---CHHHHHHH
Confidence            6666777788888888888888                                     77765 5899   99999999


Q ss_pred             HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhhcccchhhhhheeeEe
Q 041759          121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSN----NLWIYSLLRFFSGISRATIGTCTIVLLTE  196 (525)
Q Consensus       121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  196 (525)
                      .+++.++++++++++|+++|| +|||+++.++.++.+++.+++++++    +++.+++.|++.|++.|...+...+++.|
T Consensus        65 ~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  143 (447)
T d1pw4a_          65 LSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH  143 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            999999999999999999999 9999999999999999999988764    77899999999999999999999999999


Q ss_pred             eecCcchhhHHhHHHHHHHHHHHHHHHHHHh-cc-CCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHH
Q 041759          197 KVGTEWRGLVGILDSFFFTIGTLTLPAIAYT-NR-SSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEV  274 (525)
Q Consensus       197 ~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~-~~-~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~  274 (525)
                      ++|+++|++++++.+.+..+|.++++.++.. .. ..+||+.|++.+++.++..++.+.+++|+|+........+     
T Consensus       144 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  218 (447)
T d1pw4a_         144 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE-----  218 (447)
T ss_dssp             TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT-----
T ss_pred             HHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhh-----
Confidence            9999999999999999999999999987443 32 4589999999999888887677777787764311110000     


Q ss_pred             HHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHH-hhhhhcccccCC
Q 041759          275 IKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVY-YGMTLGIENLGF  353 (525)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  353 (525)
                              .+.+.+    +...+..+.+    ........+..++++.++......++......... +...+..+..+.
T Consensus       219 --------~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (447)
T d1pw4a_         219 --------YKNDYP----DDYNEKAEQE----LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHF  282 (447)
T ss_dssp             --------TCCC---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCC
T ss_pred             --------hhhhcc----cchhhccccc----cchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhccccccc
Confidence                    000000    0000000000    00011356677888877666665555555444433 343444555788


Q ss_pred             hhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Q 041759          354 DIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASLFSAY  433 (525)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (525)
                      +............+    +.+++.++.+++.||++|++..........+..............+.....+..++.+++.+
T Consensus       283 ~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  358 (447)
T d1pw4a_         283 ALDKSSWAYFLYEY----AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY  358 (447)
T ss_dssp             CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHT
T ss_pred             ccchhhhhhhcchh----hhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence            88888877777777    77799999999999999876555444444333333333222212234455666667777777


Q ss_pred             HHHHHHHhhhccccCcchhhhhhHHHHHHHHH-HHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHHHhc
Q 041759          434 IAYTVIFIYAIELFPTCVRNSATSIMRLAIIF-AAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFVICL  502 (525)
Q Consensus       434 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (525)
                      ...+....+..|.+|++.|+++.|+.+...++ |.+++|.+.|.  +..++...+.+++++.+++.++...+
T Consensus       359 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         359 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            77788889999999999999999999988877 45678888874  44456677777766666665544333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.7e-27  Score=232.75  Aligned_cols=363  Identities=16%  Similarity=0.034  Sum_probs=246.6

Q ss_pred             ccc-eeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHH----HH
Q 041759          100 ALT-IISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIY----SL  174 (525)
Q Consensus       100 ~~~-i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l----~~  174 (525)
                      +|. +++++|+   |..++|++.+++.++..++++++|+++|| +|||++++++..+..++.++..+..+....    ++
T Consensus        30 l~~~l~~~~g~---s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (417)
T d1pv7a_          30 FPIWLHDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV  105 (417)
T ss_dssp             HHHHHHHHHCC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHH
T ss_pred             HHHHHHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            554 6778999   99999999999999999999999999999 999999999999999998888887665543    45


Q ss_pred             HHHHHhhcccchhhhhheeeEeeecC--cchhhHHhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhHhh
Q 041759          175 LRFFSGISRATIGTCTIVLLTEKVGT--EWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLY  252 (525)
Q Consensus       175 ~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~~f~~~~~~~~~~~~~~~  252 (525)
                      .+++.+.+.+...........+..++  +++.+..+........|..+++.++..+...+|+..+........+..++..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  185 (417)
T d1pv7a_         106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF  185 (417)
T ss_dssp             HHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHH
Confidence            55555555555544444444333332  3445567778888888999999887766666788777777777766665777


Q ss_pred             eeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHH
Q 041759          253 IFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMV  332 (525)
Q Consensus       253 ~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  332 (525)
                      +.++|+|+.   +++.++.+       . .++..                       ......+.++++..+........
T Consensus       186 ~~~~~~~~~---~~~~~~~~-------~-~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~  231 (417)
T d1pv7a_         186 FAKTDAPSS---ATVANAVG-------A-NHSAF-----------------------SLKLALELFRQPKLWFLSLYVIG  231 (417)
T ss_dssp             SSCCCSCSS---SCSSHHHH-------S-CCCCC-----------------------CHHHHHHHTTSSHHHHHHHHHHH
T ss_pred             HHhcccccc---hhhhhhhh-------h-hcccc-----------------------cccccccccccccccchhhhhHH
Confidence            777776632   11111100       0 00000                       00233344444443333333333


Q ss_pred             HHHHHHHHH----hhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHH
Q 041759          333 PGFGIGVVY----YGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAV  408 (525)
Q Consensus       333 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~  408 (525)
                      .........    ..........+.+............+    +.+++..+.+++.||.++|+.+.++..+.+++.+.+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~  307 (417)
T d1pv7a_         232 VSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGEL----LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS  307 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH----HHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccccccccccccccchhhhccccccccc----ccccchhhhhhhhcccccccchhhhHHHHHHhhhccc
Confidence            332222222    22222333333444444444444444    6668889999999999999999999999888888777


Q ss_pred             HhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHH-HHHHHHHHHHHHHHhh--ccCchhHHH
Q 041759          409 VANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMR-LAIIFAAIFSSVLVAA--GSNNEFVSY  485 (525)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~-~~~~~g~~~~p~i~~~--~~~~~~~~~  485 (525)
                      ..++.     ...++..++.+++.+...+...++..|.+|++.|+++.++.. ....+|..++|.+.|.  +..+....+
T Consensus       308 ~~~~~-----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~  382 (417)
T d1pv7a_         308 FATSA-----LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY  382 (417)
T ss_dssp             TCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             ccccc-----chhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence            65544     466777788888889999999999999999999999999864 4567899999999885  334667778


Q ss_pred             HHHHHHHHHHHHHH-HhccCCCCCC
Q 041759          486 GVFGLVIICCGFFV-ICLPETRGSS  509 (525)
Q Consensus       486 ~~~~~~~~~~~~~~-~~~~~~~~~~  509 (525)
                      .+.+++.++..++. +.+++++..+
T Consensus       383 ~~~~~~~~~~~~~~~~~l~~~~~~~  407 (417)
T d1pv7a_         383 LVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSSCTT
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCccc
Confidence            88877776666544 4455444443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1.1e-13  Score=133.40  Aligned_cols=153  Identities=13%  Similarity=0.126  Sum_probs=134.3

Q ss_pred             ceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 041759          102 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGI  181 (525)
Q Consensus       102 ~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~  181 (525)
                      ...++.+.   +....+...+...++..++..+.+++.|| +|||+.+.++.++.+++.++..+.++.+.+++..++.|+
T Consensus       249 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  324 (417)
T d1pv7a_         249 SFFATGEQ---GTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMF  324 (417)
T ss_dssp             TSSSCHHH---HHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             cccccccc---chhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhccccccccchhhHHHHHHHH
Confidence            33444555   77888899999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             cccchhhhhheeeEeeecCcchhhHHhHH-HHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCC
Q 041759          182 SRATIGTCTIVLLTEKVGTEWRGLVGILD-SFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSES  258 (525)
Q Consensus       182 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpes  258 (525)
                      +.+...+...+++.|.+|++.|+++.++. +....+|.+++|.+ +.+.+..||+..|++.+++.++..++..+.++++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         325 EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999975 56778999999988 6677778999999999988888775666666543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=4.4e-11  Score=116.48  Aligned_cols=149  Identities=13%  Similarity=0.004  Sum_probs=115.8

Q ss_pred             cceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHH---HHHHHH--hhhhHHHHHHH
Q 041759          101 LTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSV---ATSLTI--FSNNLWIYSLL  175 (525)
Q Consensus       101 ~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i---~~~~~~--~~~~~~~l~~~  175 (525)
                      ..+.+.++.   +..+.++..+...++..++.++.|++.|| ++||+..........+   +.++..  ...+.+..++.
T Consensus       274 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (447)
T d1pw4a_         274 TYLKEVKHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC  349 (447)
T ss_dssp             HHBTTBSCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHH
T ss_pred             hhccccccc---ccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccchhHHHHHHHHHHHHhcccccHHHHHHH
Confidence            445667788   89999999999999999999999999999 9987644433333222   222222  23577888888


Q ss_pred             HHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHH-HHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhhe
Q 041759          176 RFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTI-GTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYI  253 (525)
Q Consensus       176 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~  253 (525)
                      -++.|++.+...+....+..|.+|++.|+++.++.+....+ |.+++|.+ +.+.+..||+..|++.++..++..++..+
T Consensus       350 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         350 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            89999999888888899999999999999999998887766 56778877 67778889999998887777766644443