Citrus Sinensis ID: 041765

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MASSSGNSSGCSSRDGQNSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGILDTTDHHHHPHAHDDFINNNPMDTNTMFLNQPIMASPDIFQYY
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEccHHHHHcc
Coil and Loop (DISEMBL)
masssgnssgcssrdgqnsaseEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIntssgildttdhhhhphahddfinnnpmdtntmflnqpimaspdifqyy
Flexible Loop (DISEMBL)
masssgnssgcssrdgqnsaseEDFQLAMdqrkrkrmqsnresarrsrmrkqkHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGILDTTDHHHHPHAHDDFINNNPMDTNTMFLnqpimaspdifQYY
Low Complexity Region (SEG)
MAsssgnssgcssRDGQNSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGILdttdhhhhphahddFINNNPMDTNTMFLNQPIMASPDIFQYY
Disordered region (IsUnstruct)
**********************************************************IAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTS**********************************************
Disordered Region (DISOPRED)
*******************************************A*RSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYM******************************************************************QPIMASPDIFQYY
Disordered Region (DISEMBL)
*********************EEDFQLAM************************HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGILDTTDHHHHPHAHDDFINNNPMDTNTMFLNQPIMASPDIFQYY
Disordered Region (DISPRO)
*************************************************RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGILDTTDHHHHPHAHDDFINNNPMDTNTMFLNQPIMASPDIFQYY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSGNSSGCSSRDGQNSASEEDFQLAMDQRKRKRMQSNRESARRSxxxxxxxxxxxxxxxxxxxxxxxxxxxxVNITTQHxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNFINTSSGILDTTDHHHHPHAHDDFINNNPMDTNTMFLNQPIMASPDIFQYY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
P24068	151	Ocs element-binding facto	N/A	no	0.693	0.748	0.421	2e-17
P12959	453	Regulatory protein opaque	N/A	no	0.527	0.189	0.406	7e-10
Q9FGX2	145	Basic leucine zipper 1 OS	no	no	0.515	0.579	0.397	8e-09
Q9FUD3	277	Basic leucine zipper 9 OS	no	no	0.638	0.375	0.326	3e-08
P23922	349	Transcription factor HBP-	N/A	no	0.404	0.189	0.393	4e-07
Q99091	296	Light-inducible protein C	N/A	no	0.411	0.226	0.402	1e-06
P25032	354	DNA-binding protein EMBP-	N/A	no	0.429	0.197	0.369	2e-06
Q99089	411	Common plant regulatory f	N/A	no	0.411	0.163	0.408	4e-06
Q99142	265	Transcriptional activator	N/A	no	0.404	0.249	0.393	7e-06
P42774	315	G-box-binding factor 1 OS	no	no	0.533	0.276	0.329	7e-06

>sp|P24068|OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 1/114 (0%)

Query: 7   NSSGCSSRDGQNSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLR 66
           +SS  S   G+ S S+ D   A   R+ KR  SNRESARRSR+RKQ+HLD+L+ +V +L+
Sbjct: 2   SSSSLSPTAGRTSGSDGD-SAADTHRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQ 60

Query: 67  KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGI 120
            +N ++          Y  +E EN+VLRA+  EL  RL S+N++L  +   SG+
Sbjct: 61  ADNARVAARARDIASQYTRVEQENTVLRARAAELGDRLRSVNEVLRLVEEFSGV 114

May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.
Zea mays (taxid: 4577)

>sp|P12959|OP2_MAIZE Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 5/91 (5%)

Query: 25  FQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYM 84
           F++  ++R RK+ +SNRESARRSR RK  HL +L  QV QL+ EN+ +L  +    Q Y 
Sbjct: 221 FKMPTEERVRKK-ESNRESARRSRYRKAAHLKELEDQVAQLKAENSCLLRRIAALNQKYN 279

Query: 85  NIESENSVLRAQLLELTQRL----DSLNDIL 111
           +   +N VLRA +  L  ++    DSL  ++
Sbjct: 280 DANVDNRVLRADMETLRAKVKMGEDSLKRVI 310

Involved in the regulation of the endosperm-specific production of albumin b-32 and other zein proteins. It is a trans-acting transcriptional activator that binds to the consensus sequence 5'-GATGAYRTGR-3'.

Zea mays (taxid: 4577)

>sp|Q9FGX2|BZIP1_ARATH Basic leucine zipper 1 OS=Arabidopsis thaliana GN=BZIP1 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 61/93 (65%), Gaps = 9/93 (9%)

Query: 29  MDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLR---KENNQILTSVNITTQHYMN 85
           +D++KRKR  SNRESARRSR++KQK ++D I ++  L    KEN++   +V    Q   +
Sbjct: 13  IDEKKRKRKLSNRESARRSRLKKQKLMEDTIHEISSLERRIKENSERCRAVK---QRLDS 69

Query: 86  IESENSVLRAQLLELTQRLDSLNDILNFINTSS 118
           +E+EN+ LR++ + L+     ++D+ N I T+S
Sbjct: 70  VETENAGLRSEKIWLSS---YVSDLENMIATTS 99

Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters involved in sugar signaling. Activated by low energy stress both at transcriptional and post-transcriptional mechanisms. Promotes dark-induced senescence and participates in the transcriptional reprogramming of amino acid metabolism during the dark-induced starvation response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FUD3|BZIP9_ARATH Basic leucine zipper 9 OS=Arabidopsis thaliana GN=BZIP9 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 59/104 (56%)

Query: 30  DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESE 89
           D ++ +RM SNRESA+RSR RKQ++L DL  QVD L+ +N+ +   +   TQ + +  + 
Sbjct: 120 DLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVDSLKGDNSTLYKQLIDATQQFRSAGTN 179

Query: 90  NSVLRAQLLELTQRLDSLNDILNFINTSSGILDTTDHHHHPHAH 133
           N VL++ +  L  ++    D++   + +S +      H  P +H
Sbjct: 180 NRVLKSDVETLRVKVKLAEDLVARGSLTSSLNQLLQTHLSPPSH 223

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P23922|HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 44/66 (66%)

Query: 32  RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENS 91
           +K+KR  SNRESARRSR+RKQ   ++L  + + L+ EN+ +   ++   + Y  + S+N+
Sbjct: 254 KKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEYEELLSKNT 313

Query: 92  VLRAQL 97
            L+A+L
Sbjct: 314 SLKAKL 319

Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|Q99091|CPRF3_PETCR Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 44/67 (65%)

Query: 32  RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENS 91
           ++++R QSNRESARRSR+RKQ   D+L  ++D L KEN  +  ++   ++    + SEN 
Sbjct: 198 KRQRRKQSNRESARRSRLRKQAKSDELQERLDNLSKENRILRKNLQRISEACAEVTSENH 257

Query: 92  VLRAQLL 98
            ++ +LL
Sbjct: 258 SIKEELL 264

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Petroselinum crispum (taxid: 4043)

>sp|P25032|EMBP1_WHEAT DNA-binding protein EMBP-1 OS=Triticum aestivum PE=1 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 29  MDQR---KRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMN 85
           MD+R   + +R QSNRESARRSR+RKQ+  ++L  +V +L   N  + + ++   +    
Sbjct: 246 MDERELKRERRKQSNRESARRSRLRKQQECEELAQKVSELTAANGTLRSELDQLKKDCKT 305

Query: 86  IESENSVLRAQLL 98
           +E+EN  L  ++L
Sbjct: 306 METENKKLMGKIL 318

Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|Q99089|CPRF1_PETCR Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 4/71 (5%)

Query: 30  DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESE 89
           D ++ +R QSNRESARRSR+RKQ   ++L  +VD L  EN  +   +N  T     + ++
Sbjct: 269 DLKRERRKQSNRESARRSRLRKQAEAEELAIKVDSLTAENMALKAEINRLTLTAEKLTND 328

Query: 90  NSVLRAQLLEL 100
           NS    +LLE+
Sbjct: 329 NS----RLLEV 335

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Petroselinum crispum (taxid: 4043)

>sp|Q99142|TAF1_TOBAC Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%)

Query: 32  RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENS 91
           ++ KR QSNRESARRSR+RKQ   ++L  +V  L  EN  + + +N   ++   ++ EN+
Sbjct: 196 KREKRKQSNRESARRSRLRKQAEAEELAIRVQSLTAENMTLKSEINKLMENSEKLKLENA 255

Query: 92  VLRAQL 97
            L  +L
Sbjct: 256 ALMERL 261

Trans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter.

Nicotiana tabacum (taxid: 4097)

>sp|P42774|GBF1_ARATH G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 32  RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENS 91
           +++KR QSNRESARRSR+RKQ   + L  +V+ L  EN  +   +   +     ++SEN+
Sbjct: 224 KRQKRKQSNRESARRSRLRKQAECEQLQQRVESLSNENQSLRDELQRLSSECDKLKSENN 283

Query: 92  VLRAQLLELTQRLDSLNDILNFINTSSGILD 122
            ++ +L    QR+     + N    ++G  D
Sbjct: 284 SIQDEL----QRVLGAEAVANLEQNAAGSKD 310

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
224082910	155	predicted protein [Populus trichocarpa]	0.944	0.993	0.668	1e-51
255538740	163	Ocs element-binding factor, putative [Ri	0.865	0.865	0.681	5e-50
224066139	156	predicted protein [Populus trichocarpa]	0.871	0.910	0.657	2e-45
359492158	154	PREDICTED: ocs element-binding factor 1-	0.852	0.902	0.650	9e-45
341958409	157	bZIP transcription factor [Prunus persic	0.871	0.904	0.646	8e-44
224105353	155	predicted protein [Populus trichocarpa]	0.865	0.909	0.623	4e-43
302398643	156	BZIP domain class transcription factor [	0.865	0.903	0.641	4e-43
255543765	159	Ocs element-binding factor, putative [Ri	0.871	0.893	0.630	5e-43
351724635	160	bZIP transcription factor bZIP124 [Glyci	0.871	0.887	0.62	1e-42
147807873	157	hypothetical protein VITISV_016463 [Viti	0.877	0.910	0.636	2e-42

>gi|224082910|ref|XP_002306888.1| predicted protein [Populus trichocarpa] gi|222856337|gb|EEE93884.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/163 (66%), Positives = 134/163 (82%), Gaps = 9/163 (5%)

Query: 1   MASSSGNSSGCSSRDGQNSASEEDFQLAM-DQRKRKRMQSNRESARRSRMRKQKHLDDLI 59
           MASSSG+SSG +    QNS SEE+ Q+ + DQRKRKRMQSNRESARRSRM+KQKHLDDL+
Sbjct: 1   MASSSGDSSGFTQL--QNSGSEENTQMMLVDQRKRKRMQSNRESARRSRMKKQKHLDDLM 58

Query: 60  AQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSG 119
           AQV QLRK+NNQILT++N+TTQHY+N+E+ENS+LRAQ++EL  RLDSLN+ILN+INTS+G
Sbjct: 59  AQVTQLRKDNNQILTTINVTTQHYLNVEAENSILRAQMMELNHRLDSLNEILNYINTSNG 118

Query: 120 ILDTTDHHHHPHAHDDFINNNPMDTNTMFLNQPIMASPDIFQY 162
           I +  DHH     H  F+N     +N  +LNQPIMASPD+FQY
Sbjct: 119 IFE-NDHHEDLPDH-SFMN----PSNLFYLNQPIMASPDLFQY 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538740|ref|XP_002510435.1| Ocs element-binding factor, putative [Ricinus communis] gi|223551136|gb|EEF52622.1| Ocs element-binding factor, putative [Ricinus communis]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 105/154 (68%), Positives = 129/154 (83%), Gaps = 13/154 (8%)

Query: 17  QNSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSV 76
           QNS SEED Q+ MDQRKRKRM SNRESARRSRMRKQ+HLDDL++QV QLRK+N+QILTS+
Sbjct: 15  QNSGSEEDMQVLMDQRKRKRMLSNRESARRSRMRKQQHLDDLMSQVSQLRKDNSQILTSI 74

Query: 77  NITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN--TSSGILDTTDHHHHPH--- 131
           NITTQH++N+E+ENS+LRAQ++EL+QRLDSLN+ILN+IN  TS+GI +  DH HH H   
Sbjct: 75  NITTQHFLNVEAENSILRAQMMELSQRLDSLNEILNYINTTTSNGIYE-IDHPHHHHQDA 133

Query: 132 ---AHDDFINNNPMDTNTMFLNQPIMASPDIFQY 162
              A D F+  NP+  N ++LNQPIMASPD+FQY
Sbjct: 134 TAVAADSFM--NPL--NLIYLNQPIMASPDLFQY 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066139|ref|XP_002302016.1| predicted protein [Populus trichocarpa] gi|222843742|gb|EEE81289.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/146 (65%), Positives = 117/146 (80%), Gaps = 4/146 (2%)

Query: 17  QNSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSV 76
           QNS SEE   L +DQRKRKRM SNRESARRSRMRKQK+L DL+AQV QLR +NNQILT++
Sbjct: 15  QNSGSEEQVVL-VDQRKRKRMLSNRESARRSRMRKQKYLGDLMAQVAQLRTDNNQILTTI 73

Query: 77  NITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGILDTTDHHHHPHAHDDF 136
           N+TTQH++N+E+ENS+LRAQ++EL  RLDSLN+ILN+INTS+GI +  DHH       D 
Sbjct: 74  NVTTQHFLNVEAENSILRAQMMELNHRLDSLNEILNYINTSNGIFE-IDHHEDLQTSADH 132

Query: 137 INNNPMDTNTMFLNQPIMASPDIFQY 162
              NP+  N + LNQPIMASPD+FQY
Sbjct: 133 GFMNPL--NLILLNQPIMASPDLFQY 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492158|ref|XP_003634372.1| PREDICTED: ocs element-binding factor 1-like [Vitis vinifera]

 Score =  184 bits (468), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 95/146 (65%), Positives = 116/146 (79%), Gaps = 7/146 (4%)

Query: 17  QNSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSV 76
           QNS SEED Q  MDQRKRKRM SNRESARRSRMRKQKHLDDL+AQV QLRKENN+IL+S+
Sbjct: 16  QNSGSEEDLQHVMDQRKRKRMLSNRESARRSRMRKQKHLDDLMAQVAQLRKENNEILSSI 75

Query: 77  NITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGILDTTDHHHHPHAHDDF 136
           NIT Q Y+ +E++NS+LRAQ +EL+ R  SLNDILN++NTS+G+ +T D    P   D F
Sbjct: 76  NITNQRYLTVEADNSILRAQAMELSHRYQSLNDILNYMNTSNGVFETED---LPVTVDPF 132

Query: 137 INNNPMDTNTMFLNQPIMASPDIFQY 162
           +  NPM  N ++LNQPI+AS D+F Y
Sbjct: 133 M--NPM--NYLYLNQPIIASVDMFPY 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341958409|gb|AEL13842.1| bZIP transcription factor [Prunus persica]

 Score =  181 bits (460), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 95/147 (64%), Positives = 113/147 (76%), Gaps = 5/147 (3%)

Query: 17  QNSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSV 76
           QNS SEED Q+ MDQRKRKRM SNRESARRSRMRKQKHLDDL+AQ+ +L+KENNQI+TSV
Sbjct: 15  QNSGSEEDLQVLMDQRKRKRMISNRESARRSRMRKQKHLDDLMAQMAELKKENNQIITSV 74

Query: 77  NITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGILDTTDHHHHPHAHDDF 136
           NIT+QHYMNIE+ENSVLRAQ  EL+ RL SLN+I +F+N S+G+    D        D F
Sbjct: 75  NITSQHYMNIEAENSVLRAQADELSNRLQSLNEIASFLNASNGVFAAGDSSSFNEPTDSF 134

Query: 137 INNNPMDTNTMFLNQPIMAS-PDIFQY 162
              NP+  N  +LNQPIMAS  ++F Y
Sbjct: 135 F--NPL--NLSYLNQPIMASAAEMFHY 157

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105353|ref|XP_002313781.1| predicted protein [Populus trichocarpa] gi|118484762|gb|ABK94250.1| unknown [Populus trichocarpa] gi|118487006|gb|ABK95334.1| unknown [Populus trichocarpa] gi|222850189|gb|EEE87736.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 91/146 (62%), Positives = 116/146 (79%), Gaps = 5/146 (3%)

Query: 17  QNSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSV 76
           QNS SEE+ Q  MDQRKRKRM SNRESARRSRMRKQKHLDDL+AQV QL+KEN+QI+TS+
Sbjct: 15  QNSGSEENLQALMDQRKRKRMISNRESARRSRMRKQKHLDDLVAQVAQLKKENHQIITSI 74

Query: 77  NITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGILDTTDHHHHPHAHDDF 136
           NITTQHY+N+E++NS+LRAQ+ EL+ RL+ LN I++ +N+S+G+   +   + P A D F
Sbjct: 75  NITTQHYLNVEADNSILRAQVSELSHRLEFLNGIISLLNSSNGLFGDSSIFNEP-AADSF 133

Query: 137 INNNPMDTNTMFLNQPIMASPDIFQY 162
           +  NP   N  +LNQPI AS D+FQY
Sbjct: 134 L--NPF--NMSYLNQPISASADMFQY 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398643|gb|ADL36616.1| BZIP domain class transcription factor [Malus x domestica] gi|302398645|gb|ADL36617.1| BZIP domain class transcription factor [Malus x domestica]

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 95/148 (64%), Positives = 113/148 (76%), Gaps = 7/148 (4%)

Query: 17  QNSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSV 76
           QNS SE D    +DQRKRKRMQSNRESARRSRMRKQ+HLDDL AQV QLRKENNQILTS+
Sbjct: 15  QNSGSEGDLHHLVDQRKRKRMQSNRESARRSRMRKQQHLDDLTAQVAQLRKENNQILTSI 74

Query: 77  NITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGILDTTDHHHHPHA-HDD 135
           NITTQH+MN+ESENSVL+AQ+ EL+QRL+SLN+IL +I+   G     D    P A H+ 
Sbjct: 75  NITTQHHMNVESENSVLKAQMAELSQRLESLNEILGYIDAGGGY--GGDFETTPVADHNS 132

Query: 136 FINNNPMDTNTMFLNQPIMASPDIFQYY 163
           FI  NP   N +++NQPIMA+ D+   Y
Sbjct: 133 FI--NPW--NMLYVNQPIMATADMLHQY 156

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543765|ref|XP_002512945.1| Ocs element-binding factor, putative [Ricinus communis] gi|223547956|gb|EEF49448.1| Ocs element-binding factor, putative [Ricinus communis]

 Score =  179 bits (453), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 115/149 (77%), Gaps = 7/149 (4%)

Query: 17  QNSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSV 76
           QNS SEED Q  MDQRKRKRM SNRESARRSRMRKQKHLDDL+AQV QLR+EN Q++TS+
Sbjct: 15  QNSGSEEDLQALMDQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRRENQQLITSI 74

Query: 77  NITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTS--SGILDTTDHHHHPHAHD 134
           NITTQHY+N+E++NS+LRAQ+ EL+ RL+SLN+I++F++     G  D T    +  A D
Sbjct: 75  NITTQHYLNVEADNSILRAQVGELSHRLESLNEIISFLSAGNNGGYGDATATTFNEPAAD 134

Query: 135 DFINNNPMDTNTMFLNQPIMAS-PDIFQY 162
            F   NP+  +  FLNQPIMAS  DIFQY
Sbjct: 135 SFF--NPLSMS--FLNQPIMASAADIFQY 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724635|ref|NP_001238344.1| bZIP transcription factor bZIP124 [Glycine max] gi|113367218|gb|ABI34666.1| bZIP transcription factor bZIP124 [Glycine max] gi|255640820|gb|ACU20693.1| unknown [Glycine max]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/150 (62%), Positives = 113/150 (75%), Gaps = 8/150 (5%)

Query: 17  QNSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSV 76
           QNS SEED Q  MDQRKRKRM SNRESARRSRMRKQKHLDDL++QV QLRKEN QILTSV
Sbjct: 15  QNSGSEEDLQAVMDQRKRKRMISNRESARRSRMRKQKHLDDLVSQVAQLRKENQQILTSV 74

Query: 77  NITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSS----GILDTTDHHHHPHA 132
           NITTQ Y+++E+ENSVLRAQ+ EL+ RL+SLN+I++ +N ++    G   T+     P  
Sbjct: 75  NITTQQYLSVEAENSVLRAQVGELSHRLESLNEIVDVLNATTVAGFGAAATSSTFVEPIN 134

Query: 133 HDDFINNNPMDTNTMFLNQPIMASPDIFQY 162
           ++ F   NP+  N  +LN PIMAS DI QY
Sbjct: 135 NNSFF--NPL--NMGYLNHPIMASADILQY 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147807873|emb|CAN73127.1| hypothetical protein VITISV_016463 [Vitis vinifera]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/146 (63%), Positives = 112/146 (76%), Gaps = 3/146 (2%)

Query: 17  QNSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSV 76
           QNS SEED Q  MDQRKRKRM SNRESARRSRMRKQKHLDDL+AQ  QLRKENNQI+TS+
Sbjct: 15  QNSGSEEDLQALMDQRKRKRMISNRESARRSRMRKQKHLDDLMAQAAQLRKENNQIITSM 74

Query: 77  NITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGILDTTDHHHHPHAHDDF 136
           N+TTQHY NIE+ENSVLRAQ  EL+ RL  L +I++F+NTS+G  ++ +    P      
Sbjct: 75  NVTTQHYFNIEAENSVLRAQFSELSNRLQYLVEIISFLNTSNGGFESGEPWTLPEPTTPD 134

Query: 137 INNNPMDTNTMFLNQPIMASPDIFQY 162
              NP+  + ++L+QPIMAS DIFQY
Sbjct: 135 SLMNPL--SLLYLSQPIMAS-DIFQY 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2018411	173	bZIP44 "AT1G75390" [Arabidopsi	0.840	0.791	0.560	2.3e-32
TAIR|locus:2139584	159	GBF6 "AT4G34590" [Arabidopsis	0.852	0.874	0.526	3.3e-31
TAIR|locus:2053124	171	bZIP2 "AT2G18160" [Arabidopsis	0.981	0.935	0.421	2.8e-27
TAIR|locus:2096024	146	BZIP53 "AT3G62420" [Arabidopsi	0.619	0.691	0.514	1.7e-20
TAIR|locus:2143191	186	bZIP3 "AT5G15830" [Arabidopsis	0.558	0.489	0.473	2.9e-16
TAIR|locus:2827461	166	bZIP48 "AT2G04038" [Arabidopsi	0.607	0.596	0.441	7.7e-16
TAIR|locus:2009932	196	bZIP58 "AT1G13600" [Arabidopsi	0.546	0.454	0.451	2e-15
UNIPROTKB|Q08418	148	lip19 "Basic/leucine zipper pr	0.539	0.594	0.443	8.8e-15
TAIR|locus:2092595	173	bZIP42 "AT3G30530" [Arabidopsi	0.484	0.456	0.468	4.9e-14
TAIR|locus:2166650	165	bZIP43 "AT5G38800" [Arabidopsi	0.533	0.527	0.425	2.7e-13

TAIR|locus:2018411 bZIP44 "AT1G75390" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 79/141 (56%), Positives = 94/141 (66%)

Query:    18 NSASEEDFQLA--MDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTS 75
             NS SE D +    +D+RKRKR QSNRESARRSRMRKQKHLDDL AQV  LRKEN QI+  
Sbjct:    25 NSGSESDLRQRDLIDERKRKRKQSNRESARRSRMRKQKHLDDLTAQVTHLRKENAQIVAG 84

Query:    76 VNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGILXXXXXXXXXXXXXX 135
             + +TTQHY+ IE+EN +LRAQ+LEL  RL SLN+I++F+ +SS                 
Sbjct:    85 IAVTTQHYVTIEAENDILRAQVLELNHRLQSLNEIVDFVESSSSGFGMETGQGLFDGGLF 144

Query:   136 FINNNPMDTNTMFLNQPIMAS 156
                 NPM  N  F NQPIMAS
Sbjct:   145 DGVMNPM--NLGFYNQPIMAS 163

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0009845 "seed germination" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2139584 GBF6 "AT4G34590" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 79/150 (52%), Positives = 99/150 (66%)

Query:    18 NSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVN 77
             +S SEE     M+QRKRKRM SNRESARRSRM+KQK LDDL AQV+ L+KEN +I+TSV+
Sbjct:    16 SSGSEESL---MEQRKRKRMLSNRESARRSRMKKQKLLDDLTAQVNHLKKENTEIVTSVS 72

Query:    78 ITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI-----NTSSGILXXXXXXXXXXX 132
             ITTQHY+ +E+ENSVLRAQL EL  RL SLNDI+ F+     N ++ +            
Sbjct:    73 ITTQHYLTVEAENSVLRAQLDELNHRLQSLNDIIEFLDSSNNNNNNNMGMCSNPLVGLEC 132

Query:   133 XXXFINNNPMDTNTMFLNQPIMASPDIFQY 162
                F+N   M   +  +NQP+MAS D   Y
Sbjct:   133 DDFFVNQMNM---SYIMNQPLMASSDALMY 159

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0080149 "sucrose induced translational repression" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=IEP

TAIR|locus:2053124 bZIP2 "AT2G18160" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 73/173 (42%), Positives = 105/173 (60%)

Query:     1 MAXXXXXXXXXXXRDGQNSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIA 60
             MA            DG N+ +  D  + +D+RKRKRM SNRESARRSRMRKQKH+DDL A
Sbjct:     1 MASSSSTYRSSSSSDGGNN-NPSDSVVTVDERKRKRMLSNRESARRSRMRKQKHVDDLTA 59

Query:    61 QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSS-- 118
             Q++QL  +N QIL S+ +T+Q YM I++ENSVL AQ+ EL+ RL SLN+I++ + ++   
Sbjct:    60 QINQLSNDNRQILNSLTVTSQLYMKIQAENSVLTAQMEELSTRLQSLNEIVDLVQSNGAG 119

Query:   119 -GI--LXXXXXXXXXXXXXXFINNNPMDTN------TMFLNQPIMASPDIFQY 162
              G+  +              + ++  M +N      +++ NQPIMA+ DI  Y
Sbjct:   120 FGVDQIDGCGFDDRTVGIDGYYDDMNMMSNVNHWGGSVYTNQPIMAN-DINMY 171

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2096024 BZIP53 "AT3G62420" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 52/101 (51%), Positives = 69/101 (68%)

Query:    19 SASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNI 78
             S ++  +    D+RKRKRM SNRESARRSRMRKQK L DLI +V  L+ +N +I   V+ 
Sbjct:    12 SDNDPRYATVTDERKRKRMISNRESARRSRMRKQKQLGDLINEVTLLKNDNAKITEQVDE 71

Query:    79 TTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSG 119
              ++ Y+ +ES+N+VLRAQ  ELT RL SLN +L  +   SG
Sbjct:    72 ASKKYIEMESKNNVLRAQASELTDRLRSLNSVLEMVEEISG 112

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:2000693 "positive regulation of seed maturation" evidence=IDA

GO:0009267 "cellular response to starvation" evidence=IEP

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2143191 bZIP3 "AT5G15830" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 44/93 (47%), Positives = 66/93 (70%)

Query:    18 NSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVN 77
             + A+EE F   +++RK++RM SNRESARRSRMRKQ+HLD+L++QV  LR EN+Q+L  +N
Sbjct:    62 DDATEEIF--VINERKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLN 119

Query:    78 ITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110
               + +   +  ENS L+ + LEL Q + S+  +
Sbjct:   120 QVSDNNDLVIQENSSLKEENLELRQVITSMKKL 152

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2827461 bZIP48 "AT2G04038" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 45/102 (44%), Positives = 66/102 (64%)

Query:    18 NSASEEDFQ---LAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILT 74
             NS S+ED     + +D+RK++RM SNRESARRSRMRKQ+HLD+L +QV +LR ENN ++ 
Sbjct:    57 NSTSDEDHHQSIMVLDERKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLID 116

Query:    75 SVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116
              +N  ++    +  ENS L+ +  +L Q +  L    N  N+
Sbjct:   117 KLNRVSETQNCVLKENSKLKEEASDLRQLVCELKSNKNNNNS 158

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2009932 bZIP58 "AT1G13600" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 42/93 (45%), Positives = 67/93 (72%)

Query:    18 NSASEEDFQLAM--DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTS 75
             NS S+ED Q +M  D+RK++RM SNRESARRSRMRKQ+HLD+L +QV +LR +N+ ++  
Sbjct:    70 NSTSDEDHQQSMVIDERKQRRMISNRESARRSRMRKQRHLDELWSQVIRLRTDNHCLMDK 129

Query:    76 VN-ITTQHYMNIESENSVLRAQLLELTQRLDSL 107
             +N ++  H + ++ EN+ L+ +  +L Q +  +
Sbjct:   130 LNRVSESHELALK-ENAKLKEETSDLRQLISEI 161

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

UNIPROTKB|Q08418 lip19 "Basic/leucine zipper protein" [Oryza sativa (taxid:4530)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query:    30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESE 89
             D+RKRKRM SNRESARRSR RKQ+ L++LIA+  +L+ EN ++   +         ++ E
Sbjct:    23 DERKRKRMLSNRESARRSRARKQQRLEELIAEAARLQAENARVEAQIGAYAGELSKVDGE 82

Query:    90 NSVLRAQLLELTQRLDSLNDILNFINTS 117
             N+VLRA+  EL  RL +L  +L  +  +
Sbjct:    83 NAVLRARHGELAGRLQALGSVLEILQVA 110

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2092595 bZIP42 "AT3G30530" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 37/79 (46%), Positives = 57/79 (72%)

Query:    29 MDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIES 88
             +++RK++RM SNRESARRSRMRKQ+HLD+L +QV  LR EN+Q+L  +N  ++ +  +  
Sbjct:    78 INERKQRRMISNRESARRSRMRKQRHLDELWSQVMWLRIENHQLLDKLNNLSESHDKVLQ 137

Query:    89 ENSVLRAQLLELTQRLDSL 107
             EN+ L+ +  EL Q +  +
Sbjct:   138 ENAQLKEETFELKQVISDM 156

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2166650 bZIP43 "AT5G38800" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 37/87 (42%), Positives = 57/87 (65%)

Query:    21 SEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITT 80
             +EE+ +  +++RK+KR  SNRESARRSRMRKQ+ +D+L +QV  LR EN+Q+L  +N   
Sbjct:    61 AEENHKEIINERKQKRKISNRESARRSRMRKQRQVDELWSQVMWLRDENHQLLRKLNCVL 120

Query:    81 QHYMNIESENSVLRAQLLELTQRLDSL 107
             +    +  EN  L+ +  EL Q +  +
Sbjct:   121 ESQEKVIEENVQLKEETTELKQMISDM 147

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
smart00338	65	smart00338, BRLZ, basic region leucin zipper	1e-16
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	1e-08
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	2e-06

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 69.5 bits (171), Expect = 1e-16
 Identities = 21/63 (33%), Positives = 39/63 (61%)

Query: 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESE 89
          D+++R+R + NRE+ARRSR RK+  +++L  +V+QL  EN ++   +    +    ++SE
Sbjct: 3  DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62

Query: 90 NSV 92
             
Sbjct: 63 LEE 65

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 20/60 (33%), Positives = 38/60 (63%)

Query: 32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENS 91
          ++ +R Q NRE+ARRSR+RK+ ++++L  +V +L  EN  + + +    +    ++SEN 
Sbjct: 5  KRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLKSENE 64

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSV 76
          D+ + +R + N E+ARRSR +K++  ++L  +V +L +EN Q+   V
Sbjct: 3  DEYRDRRRR-NNEAARRSREKKKQREEELEERVKELEEENAQLRQKV 48

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.54
smart00338	65	BRLZ basic region leucin zipper.	99.47
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.43
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.23
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.19
KOG3584	348	consensus cAMP response element binding protein an	99.16
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	99.02
KOG0837	279	consensus Transcriptional activator of the JUN fam	98.34
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.09
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.94
KOG3119	269	consensus Basic region leucine zipper transcriptio	97.55
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.22
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	97.08
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	96.99
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.74
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.64
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	96.64
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	96.63
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	96.58
PRK15422	79	septal ring assembly protein ZapB; Provisional	96.58
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	96.42
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	96.26
PRK10884	206	SH3 domain-containing protein; Provisional	95.98
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	95.87
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.85
PRK13169	110	DNA replication intiation control protein YabA; Re	95.77
PRK13169	110	DNA replication intiation control protein YabA; Re	95.71
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	95.49
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.35
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	95.18
COG4467	114	Regulator of replication initiation timing [Replic	95.13
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	95.13
PRK11637	428	AmiB activator; Provisional	95.1
PF04899	70	MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 Th	94.97
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	94.85
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.83
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.31
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	94.16
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	94.01
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	93.97
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	93.9
PRK15422	79	septal ring assembly protein ZapB; Provisional	93.85
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.84
COG4026	290	Uncharacterized protein containing TOPRIM domain,	93.7
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	93.4
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	93.37
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	93.37
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	93.34
PRK10884	206	SH3 domain-containing protein; Provisional	93.29
PRK11637	428	AmiB activator; Provisional	93.28
PRK04406	75	hypothetical protein; Provisional	93.17
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	93.15
smart00338	65	BRLZ basic region leucin zipper.	93.09
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	93.06
PRK02119	73	hypothetical protein; Provisional	92.88
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.88
PRK09039	343	hypothetical protein; Validated	92.73
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	92.71
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	92.71
PRK04325	74	hypothetical protein; Provisional	92.6
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	92.48
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	92.15
PRK02793	72	phi X174 lysis protein; Provisional	92.02
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	91.92
PRK00295	68	hypothetical protein; Provisional	91.86
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	91.81
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	91.7
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	91.65
PRK00846	77	hypothetical protein; Provisional	91.53
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	91.41
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	91.4
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	91.11
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	90.98
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	90.95
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	90.89
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.81
PF14662	193	CCDC155: Coiled-coil region of CCDC155	90.8
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	90.74
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	90.72
COG4467	114	Regulator of replication initiation timing [Replic	90.59
PF15294	278	Leu_zip: Leucine zipper	90.49
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	90.32
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	89.79
PRK00888	105	ftsB cell division protein FtsB; Reviewed	89.27
COG4942	420	Membrane-bound metallopeptidase [Cell division and	88.98
PRK00736	68	hypothetical protein; Provisional	88.92
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	88.88
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	88.43
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	88.11
PRK02119	73	hypothetical protein; Provisional	87.87
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	87.82
PRK09039	343	hypothetical protein; Validated	87.65
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.44
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	87.42
PRK00295	68	hypothetical protein; Provisional	87.35
PRK13922	276	rod shape-determining protein MreC; Provisional	87.33
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	87.31
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.17
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	87.02
PRK02793	72	phi X174 lysis protein; Provisional	86.97
KOG3650	120	consensus Predicted coiled-coil protein [General f	86.89
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	86.88
COG4942	420	Membrane-bound metallopeptidase [Cell division and	86.85
PF07412	200	Geminin: Geminin; InterPro: IPR022786 This family	86.7
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	86.67
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	86.3
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	85.93
COG4026	290	Uncharacterized protein containing TOPRIM domain,	85.92
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	85.88
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	85.74
PRK04406	75	hypothetical protein; Provisional	85.73
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	85.73
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	85.69
PF10186	302	Atg14: UV radiation resistance protein and autopha	85.64
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	85.64
COG2900	72	SlyX Uncharacterized protein conserved in bacteria	85.54
PRK04325	74	hypothetical protein; Provisional	85.41
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	85.4
PF07334	76	IFP_35_N: Interferon-induced 35 kDa protein (IFP 3	85.18
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	85.06
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	85.0
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	84.92
PRK00736	68	hypothetical protein; Provisional	84.85
KOG1962	216	consensus B-cell receptor-associated protein and r	84.68
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	84.59
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	84.46
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	84.43
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	84.35
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	84.3
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	84.24
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	84.09
KOG3650	120	consensus Predicted coiled-coil protein [General f	83.98
PHA03011	120	hypothetical protein; Provisional	83.84
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	83.76
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	83.76
PRK10803	263	tol-pal system protein YbgF; Provisional	83.38
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	83.28
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	83.24
PRK04863	1486	mukB cell division protein MukB; Provisional	83.15
PF06632	342	XRCC4: DNA double-strand break repair and V(D)J re	83.02
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	82.84
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	82.59
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	82.55
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	82.53
PRK00888	105	ftsB cell division protein FtsB; Reviewed	82.36
KOG1962	216	consensus B-cell receptor-associated protein and r	82.35
PF07058	351	Myosin_HC-like: Myosin II heavy chain-like; InterP	82.13
PF07558	46	Shugoshin_N: Shugoshin N-terminal coiled-coil regi	82.0
PF14988	206	DUF4515: Domain of unknown function (DUF4515)	81.99
PF12709	87	Kinetocho_Slk19: Central kinetochore-associated; I	81.88
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	81.78
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	81.64
PF14257	262	DUF4349: Domain of unknown function (DUF4349)	81.62
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	81.6
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	81.55
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	81.43
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	81.28
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	81.26
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	81.11
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	81.07
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	80.97
PRK03918	880	chromosome segregation protein; Provisional	80.93
PF10186	302	Atg14: UV radiation resistance protein and autopha	80.61
KOG1103	561	consensus Predicted coiled-coil protein [Function	80.58
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	80.49
smart00340	44	HALZ homeobox associated leucin zipper.	80.47
KOG4797	123	consensus Transcriptional regulator [Transcription	80.4
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	80.33
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	80.31
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	80.11
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	80.07
PF05103	131	DivIVA: DivIVA protein; InterPro: IPR007793 The Ba	80.03

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.54  E-value=1.7e-13  Score=115.51  Aligned_cols=86  Identities=20%  Similarity=0.293  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL  107 (163)
Q Consensus        28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l  107 (163)
                      .-+||-.||+++||++|+.+|.|||+++++++.+|..|..||+.|+.+++.|..+.+.|.++|..|+.+++.|++.|..+
T Consensus        65 S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~  144 (292)
T KOG4005|consen   65 SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL  144 (292)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence            44788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 041765          108 NDILNF  113 (163)
Q Consensus       108 ~~il~~  113 (163)
                      +....+
T Consensus       145 ~~~~~~  150 (292)
T KOG4005|consen  145 KQQQQH  150 (292)
T ss_pred             HHHHHH
Confidence            876654

>smart00338 BRLZ basic region leucin zipper

Probab=99.47  E-value=4.6e-13  Score=91.12  Aligned_cols=60  Identities=35%  Similarity=0.598  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 041765           30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESE   89 (163)
Q Consensus        30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~E   89 (163)
                      |+|+.+|+++||+||++||.||++|+.+|+.+|..|+.+|..|..++..+..++..|..+
T Consensus         3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~   62 (65)
T smart00338        3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE   62 (65)
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999888776655554444443

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.43  E-value=1.2e-12  Score=88.93  Aligned_cols=61  Identities=31%  Similarity=0.573  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 041765           30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESEN   90 (163)
Q Consensus        30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN   90 (163)
                      +.++.+|+++||+||++||.||+.++++|+.+|..|..+|..|..++..|...+..|..+|
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4678899999999999999999999999999999999999999998888888887777776

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.23  E-value=1.9e-11  Score=112.39  Aligned_cols=66  Identities=30%  Similarity=0.361  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041765           30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRA   95 (163)
Q Consensus        30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lra   95 (163)
                      --||..||++|||||..||+|||+|+..||.++..|.+||+.|+.++..|++++..++.||..|+-
T Consensus       279 v~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv  344 (655)
T KOG4343|consen  279 VLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV  344 (655)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence            356777999999999999999999999999999999999999999999999999999999999864

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.19  E-value=1.7e-10  Score=76.25  Aligned_cols=50  Identities=34%  Similarity=0.575  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041765           30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITT   80 (163)
Q Consensus        30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~   80 (163)
                      |+++.||. +||+||++||.||++++.+|+.+|..|+.+|..|..++..|.
T Consensus         3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~   52 (54)
T PF07716_consen    3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLE   52 (54)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56677777 999999999999999999999999999999998877776554

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.16  E-value=9e-11  Score=101.42  Aligned_cols=54  Identities=24%  Similarity=0.439  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041765           30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHY   83 (163)
Q Consensus        30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~   83 (163)
                      ..||.-|+++|||+||.||+|||+|+.|||.+|+.|+.+|..|..++..|++.|
T Consensus       289 trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY  342 (348)
T KOG3584|consen  289 TRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY  342 (348)
T ss_pred             hhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence            356777999999999999999999999999999999999999988887777655

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=99.02  E-value=5.6e-10  Score=101.17  Aligned_cols=72  Identities=28%  Similarity=0.337  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      +..-||-||+++|.+||+.||+|||.|++.||.+|....+||+.|.+++       +.|+.+|..|-+|+..|+..+.+
T Consensus       247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV-------~~Le~~N~sLl~qL~klQt~v~q  318 (472)
T KOG0709|consen  247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKV-------EELELSNRSLLAQLKKLQTLVIQ  318 (472)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHH-------HHHhhccHHHHHHHHHHHHHHhh
Confidence            3455788999999999999999999999999999999999999987776       56777888888888888776543

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=98.34  E-value=4e-06  Score=71.81  Aligned_cols=66  Identities=30%  Similarity=0.454  Sum_probs=52.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           35 KRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI  114 (163)
Q Consensus        35 rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~  114 (163)
                      |..++||++|.+||.||-+|+..||.+|..|..+|..|              .++-..|+.++.++.+++      +..+
T Consensus       209 Rkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L--------------~~~l~~l~~~v~e~k~~V------~~hi  268 (279)
T KOG0837|consen  209 RKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDL--------------ASELSKLKEQVAELKQKV------MEHI  268 (279)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhH--------------HHHHHHHHHHHHHHHHHH------HHHH
Confidence            34689999999999999999999999999999888775              445556777777776654      5566


Q ss_pred             hccCCC
Q 041765          115 NTSSGI  120 (163)
Q Consensus       115 ~~~~~~  120 (163)
                      ..+.++
T Consensus       269 ~ngc~~  274 (279)
T KOG0837|consen  269 HNGCQL  274 (279)
T ss_pred             hccccc
Confidence            655554

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.09  E-value=5.9e-08  Score=70.45  Aligned_cols=51  Identities=27%  Similarity=0.457  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765           28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNI   78 (163)
Q Consensus        28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~   78 (163)
                      ..+-|..||.++||.+|+.||.||..++++|+.++..|+.+...|..++..
T Consensus        26 ~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~   76 (92)
T PF03131_consen   26 IAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSE   76 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445688899999999999999999999999999988877665555444433

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.94  E-value=0.00011  Score=63.74  Aligned_cols=48  Identities=23%  Similarity=0.436  Sum_probs=36.1

Q ss_pred             HHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 041765           29 MDQRKRK-RMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSV   76 (163)
Q Consensus        29 ~deRk~r-R~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i   76 (163)
                      .++++.+ ..+.|..+|-|.|+||++..+.|+.++..|+++|.+|+.++
T Consensus       223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa  271 (294)
T KOG4571|consen  223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQA  271 (294)
T ss_pred             CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444 45777778999999999999999999888777776654443

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=97.55  E-value=0.00057  Score=58.50  Aligned_cols=66  Identities=27%  Similarity=0.484  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND  109 (163)
Q Consensus        30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~  109 (163)
                      +.+-.-|+.+|=+++||||.+.+...+++..+|..                     |+.||..||.++..|+..+..|..
T Consensus       192 ~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~---------------------leken~~lr~~v~~l~~el~~~~~  250 (269)
T KOG3119|consen  192 DPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAE---------------------LEKENEALRTQVEQLKKELATLRR  250 (269)
T ss_pred             CHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444556789999999999998887777666655                     455566677788888888888888


Q ss_pred             HHHHHhc
Q 041765          110 ILNFINT  116 (163)
Q Consensus       110 il~~~~~  116 (163)
                      ++.....
T Consensus       251 ~~~~~~~  257 (269)
T KOG3119|consen  251 LFLQLPK  257 (269)
T ss_pred             HHHhhcc
Confidence            7766543

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.22  E-value=0.011  Score=46.19  Aligned_cols=69  Identities=22%  Similarity=0.380  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           29 MDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN  108 (163)
Q Consensus        29 ~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~  108 (163)
                      +--|.+||-++||==|+-+|-|+-+.-++||.+-..|..+              ++.|..||+.++.++..+..++..|.
T Consensus        50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qq--------------v~~L~~e~s~~~~E~da~k~k~e~l~  115 (135)
T KOG4196|consen   50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQ--------------VEKLKEENSRLRRELDAYKSKYEALQ  115 (135)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778999999999999999998888888765554433              44566677777777777777776665


Q ss_pred             HHH
Q 041765          109 DIL  111 (163)
Q Consensus       109 ~il  111 (163)
                      .-.
T Consensus       116 ~~~  118 (135)
T KOG4196|consen  116 NSA  118 (135)
T ss_pred             hhh
Confidence            443

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.08  E-value=0.0043  Score=43.92  Aligned_cols=55  Identities=22%  Similarity=0.331  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND  109 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~  109 (163)
                      +.=|.-+|..|+.+|+.|..+...+......|+.||..|+.+-..++.||++|-.
T Consensus        20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG   74 (79)
T COG3074          20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG   74 (79)
T ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3446678899999999999999999999999999999999999999999988754

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=96.99  E-value=0.0018  Score=61.17  Aligned_cols=73  Identities=29%  Similarity=0.423  Sum_probs=56.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           34 RKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF  113 (163)
Q Consensus        34 ~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~  113 (163)
                      .||+=+||.||+++|+||-..+-.||.+|..|+++-.+|+.+-       ..+..+..+++.++.+|...      |+..
T Consensus       492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er-------~~~d~~L~~~kqqls~L~~~------Vf~~  558 (604)
T KOG3863|consen  492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRER-------DELDSTLGVMKQQLSELYQE------VFQQ  558 (604)
T ss_pred             cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH------HHHH
Confidence            4677899999999999999999999999999999988876654       34556667777777777544      4555


Q ss_pred             HhccCC
Q 041765          114 INTSSG  119 (163)
Q Consensus       114 ~~~~~~  119 (163)
                      +-...|
T Consensus       559 lrd~eg  564 (604)
T KOG3863|consen  559 LRDEEG  564 (604)
T ss_pred             Hhcccc
Confidence            544444

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.74  E-value=0.038  Score=38.84  Aligned_cols=50  Identities=22%  Similarity=0.250  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           61 QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI  110 (163)
Q Consensus        61 qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i  110 (163)
                      .+..|+.++..|..+...+.+....|..||..|+.+-..+..||..|-.-
T Consensus        19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k   68 (72)
T PF06005_consen   19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445556666666666666667777777777777777777777665443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.64  E-value=0.056  Score=38.00  Aligned_cols=61  Identities=15%  Similarity=0.161  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF  113 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~  113 (163)
                      +-++.|+.+|..+-.....|..++..|.++...+..+|..|+.+...|++.-....+-|..
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~   64 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578899999999999999999999999999999999999999999999888777765554

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=96.64  E-value=0.042  Score=38.13  Aligned_cols=61  Identities=16%  Similarity=0.188  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      +..|+.+|..|=....+|..++..|.++...+..|+..|..+...-+.|+..+-.-|..++
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le   62 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE   62 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            3445555555555555555555555555666667777777777777776666655555443

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=96.63  E-value=0.033  Score=39.37  Aligned_cols=61  Identities=21%  Similarity=0.315  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           55 LDDLIAQVDQLRKENNQILTSVNITTQHYM--------NIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~--------~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      +.+.+.++..|++||-.|+-+|-.+.++..        .+..+|..|+.++..|+..++.+...|.-++
T Consensus         2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~   70 (75)
T PF07989_consen    2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE   70 (75)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999988876        4578999999999999999999999887665

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=96.58  E-value=0.029  Score=38.89  Aligned_cols=56  Identities=16%  Similarity=0.306  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN  108 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~  108 (163)
                      +.++.|-..+.+|+.||..|+.++..+...-..|...|..=|.+++.+-.||.+|.
T Consensus         7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le   62 (65)
T TIGR02449         7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE   62 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            56788888999999999999999999999999999999999999999999988875

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=96.58  E-value=0.022  Score=40.97  Aligned_cols=56  Identities=23%  Similarity=0.332  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      .=|.-+|+.|+.+|..|..+++.+......|+.||..|+.+...++.||..|-.-+
T Consensus        21 ~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm   76 (79)
T PRK15422         21 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM   76 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34556777788888888888888777788899999999999999999998876544

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=96.42  E-value=0.014  Score=37.54  Aligned_cols=42  Identities=29%  Similarity=0.482  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD  105 (163)
Q Consensus        64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~  105 (163)
                      +|+.+-..|+...+.|...+..|..||..|++++..|..+++
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            456666777777777888888888888888888888877664

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=96.26  E-value=0.038  Score=41.53  Aligned_cols=53  Identities=26%  Similarity=0.428  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND  109 (163)
Q Consensus        57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~  109 (163)
                      +|-.++..|+..-..|..++..|+.++..|..||..|+-+...|+.+|..+..
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45556666666667777777777777778888888888888888888777665

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.98  E-value=0.099  Score=43.39  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=22.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN  112 (163)
Q Consensus        72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~  112 (163)
                      +..++....+.+..|+.+|..|+.++..++.++..++.-+.
T Consensus       123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~  163 (206)
T PRK10884        123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD  163 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555666666666666666666555544433

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=95.87  E-value=0.061  Score=40.44  Aligned_cols=50  Identities=30%  Similarity=0.351  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ  102 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~  102 (163)
                      ..+..|+.++..|-.+-..|+..+..+.+....|.-||..||..+.++..
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46789999999999999999999999999999999999999999999866

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.85  E-value=0.09  Score=42.40  Aligned_cols=55  Identities=22%  Similarity=0.294  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           61 QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        61 qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      ....++.||..|..++..|.+++..|+.||..|..++..+......|-.||+..-
T Consensus        98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR  152 (161)
T TIGR02894        98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR  152 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667788999999999999999999999999999999999999999999988653

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=95.77  E-value=0.086  Score=39.95  Aligned_cols=51  Identities=22%  Similarity=0.393  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL  107 (163)
Q Consensus        57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l  107 (163)
                      +|-.++..|+..-..|..++..|++.+..+..||..|+.+-..|+.+|..+
T Consensus         5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455556666666666666666677777777777777777777777777665

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=95.71  E-value=0.076  Score=40.26  Aligned_cols=50  Identities=28%  Similarity=0.296  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ  102 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~  102 (163)
                      ..+..|+.++..+-.+-..|+..+..+.++...|..||..||..+.++..
T Consensus         8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~   57 (110)
T PRK13169          8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA   57 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46789999999999999999999999999999999999999999999843

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=95.49  E-value=0.79  Score=40.24  Aligned_cols=81  Identities=20%  Similarity=0.289  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           28 AMDQRKRKRMQSNRESARRSRMR--KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD  105 (163)
Q Consensus        28 ~~deRk~rR~lsNReSARRSR~R--Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~  105 (163)
                      ..++|-+|=|++|   |+--=.|  =.-.++-|..++..++.....+..++......+..+......|+.++..|+..|.
T Consensus        88 evEekyrkAMv~n---aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~  164 (302)
T PF09738_consen   88 EVEEKYRKAMVSN---AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK  164 (302)
T ss_pred             HHHHHHHHHHHHH---hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999998   3322221  1234555566666666666666666655556666777777778888888888887


Q ss_pred             HHHHHH
Q 041765          106 SLNDIL  111 (163)
Q Consensus       106 ~l~~il  111 (163)
                      ...++|
T Consensus       165 ~rdeli  170 (302)
T PF09738_consen  165 QRDELI  170 (302)
T ss_pred             HHHHHH
Confidence            777777

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.35  E-value=0.54  Score=44.39  Aligned_cols=84  Identities=18%  Similarity=0.283  Sum_probs=69.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        32 Rk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      +.+..+++-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|..+..++..++..|.+-+
T Consensus       150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi  229 (546)
T PF07888_consen  150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI  229 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445666677777777777888888888888888899999999888888889999999999999999999998888777


Q ss_pred             HHHh
Q 041765          112 NFIN  115 (163)
Q Consensus       112 ~~~~  115 (163)
                      ..++
T Consensus       230 ~~l~  233 (546)
T PF07888_consen  230 KTLT  233 (546)
T ss_pred             HHHH
Confidence            6654

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=95.18  E-value=0.33  Score=33.78  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL  107 (163)
Q Consensus        52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l  107 (163)
                      +.+++.+..++...+.+|..|..+-+....++...-.+|..|++++..|+..|..+
T Consensus        11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen   11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666777777777777777777766666666667777777777777777765543

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=95.13  E-value=0.15  Score=38.80  Aligned_cols=50  Identities=28%  Similarity=0.403  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      ++-.+|..|+..-..|..++..+++++..+..||..|+-+...|+.||..
T Consensus         5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            45567777777778888899999999999999999999999999999977

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=95.13  E-value=0.81  Score=39.47  Aligned_cols=94  Identities=22%  Similarity=0.327  Sum_probs=71.6

Q ss_pred             hhhHHHHHHHHHHHhHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           26 QLAMDQRKRKRMQSNRES--ARRSRMRKQ-KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ  102 (163)
Q Consensus        26 ~~~~deRk~rR~lsNReS--ARRSR~RKq-~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~  102 (163)
                      ++.++.||.|-+..---|  -++.|+-+- ..+.+|+.+-..|+.||+.|+.....|--+.+.+..+-..|++++++|.+
T Consensus        67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~  146 (292)
T KOG4005|consen   67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ  146 (292)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence            456678888744332222  123344443 34679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCC
Q 041765          103 RLDSLNDILNFINTSSG  119 (163)
Q Consensus       103 rl~~l~~il~~~~~~~~  119 (163)
                      ..+.=+.++.-=+.+.|
T Consensus       147 ~~~~~~~v~eee~~~~g  163 (292)
T KOG4005|consen  147 QQQHNTRVIEEENASAG  163 (292)
T ss_pred             HHHHhhHHHhhhhhccC
Confidence            98888888776655555

>PRK11637 AmiB activator; Provisional

Probab=95.10  E-value=0.75  Score=41.28  Aligned_cols=64  Identities=17%  Similarity=0.225  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN  112 (163)
Q Consensus        49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~  112 (163)
                      ...+..+.+++.++..+..+-..+..++..+..++..+..+-..|..++.+++.++..+...+.
T Consensus        64 ~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~  127 (428)
T PRK11637         64 RQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA  127 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455556666666666666666666666666666666666666666666666666555554

>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids []

Probab=94.97  E-value=0.65  Score=32.57  Aligned_cols=60  Identities=18%  Similarity=0.242  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      ..|+.--..+.+.-+.....+..+...+.....+|..|++++..|..+|..|.+-+..+.
T Consensus        10 ~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs   69 (70)
T PF04899_consen   10 SALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS   69 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334443444555666677888888888999999999999999999999999999888764

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=94.85  E-value=0.098  Score=48.49  Aligned_cols=52  Identities=15%  Similarity=0.194  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ  102 (163)
Q Consensus        51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~  102 (163)
                      -|...++||++++.|+.|.+.+.+....+++++..++.||..|++|+..+..
T Consensus        74 qQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~  125 (475)
T PRK13729         74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA  125 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3457789999999999999989899999999999999999999999854433

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=94.83  E-value=0.75  Score=35.50  Aligned_cols=82  Identities=17%  Similarity=0.259  Sum_probs=60.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           33 KRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN  112 (163)
Q Consensus        33 k~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~  112 (163)
                      .+.|=..-|+..-....++..-++.|...+..|+.++..+..++..+......+..++..+...+..+.+.++.+...+.
T Consensus        46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~  125 (151)
T PF11559_consen   46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ  125 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444556777777777777888888888888888888888888877777777777777777777777777777776665


Q ss_pred             HH
Q 041765          113 FI  114 (163)
Q Consensus       113 ~~  114 (163)
                      .+
T Consensus       126 ~~  127 (151)
T PF11559_consen  126 QR  127 (151)
T ss_pred             HH
Confidence            54

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.31  E-value=0.4  Score=39.76  Aligned_cols=61  Identities=21%  Similarity=0.307  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      ..+|-..|+.|+.-|..|..++..+...+..++..|+.|..++..|+..+++++..+....
T Consensus         3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK   63 (193)
T PF14662_consen    3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAK   63 (193)
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577778888888888888888888888888888888888888888888888887776653

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=94.16  E-value=0.95  Score=31.71  Aligned_cols=62  Identities=21%  Similarity=0.371  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN  112 (163)
Q Consensus        51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~  112 (163)
                      |.+.+..|..+-..|......+...|..|..+...++.+...|+.++..+...+..|...+.
T Consensus        10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~   71 (74)
T PF12329_consen   10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK   71 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            67788888888888888888888888888888888888888888888888888888877664

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=94.01  E-value=0.31  Score=31.33  Aligned_cols=41  Identities=17%  Similarity=0.277  Sum_probs=35.6

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           71 QILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        71 ~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      +|......|...|..|.++|..|..+...|+..+..|...+
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl   42 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL   42 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46677888999999999999999999999999999888765

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=93.97  E-value=0.4  Score=43.08  Aligned_cols=60  Identities=23%  Similarity=0.306  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN  108 (163)
Q Consensus        49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~  108 (163)
                      +|-+.+...||.-+.+++.||+.|..+++.+.+++...+.|+..|-.++.|-.+..+.|+
T Consensus       123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~  182 (401)
T PF06785_consen  123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELN  182 (401)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677778888888899999999999999999998888888888777776666555555

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=93.90  E-value=2.5  Score=33.25  Aligned_cols=85  Identities=19%  Similarity=0.227  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           31 QRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI  110 (163)
Q Consensus        31 eRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i  110 (163)
                      +|-..-...|++.+-.-=.-+++.+..|+.++..+..+...|...+..+...-..|..+-...+.++.+|.....++...
T Consensus        30 EreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~  109 (140)
T PF10473_consen   30 ERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENL  109 (140)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            44555566777777777777777888888888887777777777777666666666666666666666666666666655


Q ss_pred             HHHHh
Q 041765          111 LNFIN  115 (163)
Q Consensus       111 l~~~~  115 (163)
                      |...+
T Consensus       110 l~~~E  114 (140)
T PF10473_consen  110 LQEKE  114 (140)
T ss_pred             HHHHH
Confidence            55443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=93.85  E-value=1.4  Score=31.77  Aligned_cols=59  Identities=14%  Similarity=0.141  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSV-------LRAQLLELTQRLDSLNDILN  112 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~-------Lraql~eL~~rl~~l~~il~  112 (163)
                      -++.||.+|.+.-....-|..+|..++++...+..|+..       |..+...|++......+-|.
T Consensus         5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr   70 (79)
T PRK15422          5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ   70 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888888887777777777777777777777777666       44455555555544444443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.84  E-value=2.4  Score=32.69  Aligned_cols=67  Identities=21%  Similarity=0.293  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           47 SRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF  113 (163)
Q Consensus        47 SR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~  113 (163)
                      .|.|-..+.+.|..++..+..++..|...+..++.++..++.+...+..+...|..++..+...+..
T Consensus        46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~  112 (151)
T PF11559_consen   46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ  112 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556677777777777777766666666666666666666666666666666655555443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=93.70  E-value=1.1  Score=38.41  Aligned_cols=65  Identities=20%  Similarity=0.262  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      =+..++++.++...|..++..|..++..+++++..++.||+.|...+..|-.++..|..-+.-+.
T Consensus       140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe  204 (290)
T COG4026         140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE  204 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence            34556677777777778888888888888888889999999988877666666655555444443

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=93.40  E-value=0.72  Score=42.87  Aligned_cols=61  Identities=20%  Similarity=0.351  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVNITTQHYM-NIESENSVLRAQLLELTQRLDSLNDILNFI  114 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~-~l~~EN~~Lraql~eL~~rl~~l~~il~~~  114 (163)
                      ++..|..+-+.|.+||+.|+++...+.+++. .+.++...|..+...|+.+++.+...|..+
T Consensus        74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l  135 (472)
T TIGR03752        74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL  135 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467778888888888888887776666663 344555555555555555555554444443

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=93.37  E-value=1.3  Score=32.83  Aligned_cols=64  Identities=20%  Similarity=0.369  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           51 KQKHLDDLIAQVDQLRKENNQILTSVNIT--TQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI  114 (163)
Q Consensus        51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l--~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~  114 (163)
                      |+..++.|..++......-..+..++..+  ...++.|.-+-..++-++.++..+++.++.++..+
T Consensus        33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL   98 (106)
T PF10805_consen   33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL   98 (106)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            45556666666665555555555555555  66667777777777888888888888877777765

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=93.37  E-value=0.62  Score=33.49  Aligned_cols=45  Identities=22%  Similarity=0.322  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL  100 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL  100 (163)
                      +.|..++..|+..-..|..++...+..+..|..||..|..=|..|
T Consensus        19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL   63 (80)
T PF10224_consen   19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL   63 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666677777666666666666666666555544

The exact function is unknown.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=93.34  E-value=2.1  Score=32.40  Aligned_cols=16  Identities=19%  Similarity=0.306  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q 041765           52 QKHLDDLIAQVDQLRK   67 (163)
Q Consensus        52 q~~l~eLe~qv~~L~~   67 (163)
                      +..+..|+..+..++.
T Consensus        15 ~n~La~Le~slE~~K~   30 (107)
T PF09304_consen   15 QNRLASLERSLEDEKT   30 (107)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            3333333333333333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.29  E-value=2.7  Score=34.87  Aligned_cols=51  Identities=10%  Similarity=0.057  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR  103 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r  103 (163)
                      ++..+|..++..+......|..++..|.+++..+..++..|++++..+++.
T Consensus       118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~  168 (206)
T PRK10884        118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444555555555565555555543

>PRK11637 AmiB activator; Provisional

Probab=93.28  E-value=2.3  Score=38.12  Aligned_cols=75  Identities=11%  Similarity=0.095  Sum_probs=57.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           37 MQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        37 ~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      ..+.....+.....-...++.|+.++..+..+-..+..++..+..++..++.+-..++.++..++..+..+-..+
T Consensus        59 ~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~  133 (428)
T PRK11637         59 KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA  133 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555566677888889999998888889999999999999999999999988888887776665444

>PRK04406 hypothetical protein; Provisional

Probab=93.17  E-value=1.3  Score=31.23  Aligned_cols=51  Identities=6%  Similarity=0.068  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      +.|+.++..|+.....+...|..|...+..-..+...|+.++..|.++|..
T Consensus         7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~   57 (75)
T PRK04406          7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN   57 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            346666666666656666666666665555666666666666666666654

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=93.15  E-value=0.63  Score=36.64  Aligned_cols=26  Identities=23%  Similarity=0.459  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765           91 SVLRAQLLELTQRLDSLNDILNFINT  116 (163)
Q Consensus        91 ~~Lraql~eL~~rl~~l~~il~~~~~  116 (163)
                      ..|+.++.+|..++..+..-|..+..
T Consensus       112 ~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen  112 EELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444444444444444443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>smart00338 BRLZ basic region leucin zipper

Probab=93.09  E-value=0.51  Score=31.60  Aligned_cols=38  Identities=21%  Similarity=0.361  Sum_probs=30.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           74 TSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        74 ~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      ..+..|..++..|..+|..|+.++..|...+..|..++
T Consensus        26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338       26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35566777788888888888888888888888887765

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=93.06  E-value=0.35  Score=32.17  Aligned_cols=50  Identities=22%  Similarity=0.290  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ  102 (163)
Q Consensus        50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~  102 (163)
                      |+..+|++|+.++..   |-..=...-......+..++.||..|++++.-++.
T Consensus         1 kw~~Rl~ELe~klka---erE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~   50 (52)
T PF12808_consen    1 KWLLRLEELERKLKA---EREARSLDRSAARKRLSKLEGENRLLRAELERLRS   50 (52)
T ss_pred             CHHHHHHHHHHHHHH---hHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            356677777766543   32222223455677788899999999999987654

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>PRK02119 hypothetical protein; Provisional

Probab=92.88  E-value=1.4  Score=30.83  Aligned_cols=51  Identities=12%  Similarity=0.106  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      ..++.++..|+.........|..|...+..-..+...|+.++..|..+|..
T Consensus         5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~   55 (73)
T PRK02119          5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD   55 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345555555555555555555555555555555556666666666555544

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.88  E-value=2.2  Score=32.72  Aligned_cols=13  Identities=31%  Similarity=0.478  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q 041765           57 DLIAQVDQLRKEN   69 (163)
Q Consensus        57 eLe~qv~~L~~EN   69 (163)
                      .|..++..|..+|
T Consensus        48 ~l~~Eiv~l~~~~   60 (120)
T PF12325_consen   48 ELREEIVKLMEEN   60 (120)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK09039 hypothetical protein; Validated

Probab=92.73  E-value=2.5  Score=37.34  Aligned_cols=35  Identities=14%  Similarity=0.191  Sum_probs=13.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      |+.++..++..+...+.+....+.++..|..+|..
T Consensus       149 Lr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~  183 (343)
T PRK09039        149 LRRQLAALEAALDASEKRDRESQAKIADLGRRLNV  183 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333344444444444444433

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=92.71  E-value=4.3  Score=33.27  Aligned_cols=86  Identities=6%  Similarity=0.105  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND  109 (163)
Q Consensus        30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~  109 (163)
                      |-+-.+.++....+-+-.+.+...+..+++.++..-..++..+...+..+...+..+..+...++.+..+....+..+..
T Consensus        87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks  166 (190)
T PF05266_consen   87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS  166 (190)
T ss_pred             ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666777889999999999999999999888777777777777777777777776665555555555444444444


Q ss_pred             HHHHHh
Q 041765          110 ILNFIN  115 (163)
Q Consensus       110 il~~~~  115 (163)
                      -+..++
T Consensus       167 ~~~~l~  172 (190)
T PF05266_consen  167 EAEALK  172 (190)
T ss_pred             HHHHHH
Confidence            444443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=92.71  E-value=1.9  Score=33.64  Aligned_cols=53  Identities=28%  Similarity=0.371  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD  105 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~  105 (163)
                      ...+.++.++..|..++..+-.+|..|+.+...++.+-..+..++.++...+.
T Consensus        14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le   66 (143)
T PF12718_consen   14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE   66 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555544444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK04325 hypothetical protein; Provisional

Probab=92.60  E-value=1.4  Score=30.92  Aligned_cols=50  Identities=14%  Similarity=0.110  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      .++.++..|+.........|..|...+..-..+...|+.++..|..+|..
T Consensus         6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~   55 (74)
T PRK04325          6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD   55 (74)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444445444444444445555566666666555544

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.48  E-value=3.7  Score=34.31  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041765           59 IAQVDQLRKENNQILTSVNITTQHYMNI   86 (163)
Q Consensus        59 e~qv~~L~~EN~~L~~~i~~l~~~~~~l   86 (163)
                      ..+++.|+..|.++...+....+....+
T Consensus        62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L   89 (251)
T PF11932_consen   62 EREIENLEVYNEQLERQVASQEQELASL   89 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=92.15  E-value=1.9  Score=37.74  Aligned_cols=64  Identities=16%  Similarity=0.358  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT  116 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~  116 (163)
                      +.++.+...+..|+.||..+..+.......+..+..|+..+..++..+..++..|..++..+..
T Consensus       244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~  307 (309)
T PF09728_consen  244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQA  307 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5678888899999999999999999999999999999999999999999999999999988753

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PRK02793 phi X174 lysis protein; Provisional

Probab=92.02  E-value=1.6  Score=30.38  Aligned_cols=49  Identities=22%  Similarity=0.180  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      ++.++..|+.........|..|...+..-..+...|..++..|..+|..
T Consensus         6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~   54 (72)
T PRK02793          6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA   54 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444444444444444444444555555555555555544

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=91.92  E-value=4.1  Score=39.59  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 041765           59 IAQVDQLRKENNQILTSVNITTQHYMNIESENSVL   93 (163)
Q Consensus        59 e~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~L   93 (163)
                      ..+..+|+.|-..|+.++...++++..++.|...|
T Consensus       544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l  578 (697)
T PF09726_consen  544 RQRRRQLESELKKLRRELKQKEEQIRELESELQEL  578 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444333

; GO: 0016021 integral to membrane

>PRK00295 hypothetical protein; Provisional

Probab=91.86  E-value=2.1  Score=29.52  Aligned_cols=47  Identities=11%  Similarity=0.117  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL  107 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l  107 (163)
                      ++.+||.+++-.+.-.       ..|...+..-..+...|+.++..|..+|..+
T Consensus         6 Ri~~LE~kla~qE~ti-------e~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~   52 (68)
T PRK00295          6 RVTELESRQAFQDDTI-------QALNDVLVEQQRVIERLQLQMAALIKRQEEM   52 (68)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4666666665554443       3334444444445566666666666666553

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=91.81  E-value=2  Score=37.41  Aligned_cols=61  Identities=16%  Similarity=0.189  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN  112 (163)
Q Consensus        52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~  112 (163)
                      +..|..|..++..+..+...++..+..++.+...+..+...+.++..++..++..+..++.
T Consensus       208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~  268 (325)
T PF08317_consen  208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE  268 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666666666666666666666666666666666666665555544

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=91.70  E-value=1.6  Score=30.03  Aligned_cols=48  Identities=17%  Similarity=0.231  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL  107 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l  107 (163)
                      +++.+||.+++-++.-...|       ..-+..-..+...|+.++..|..+|..+
T Consensus         4 ~Ri~~LE~~la~qe~~ie~L-------n~~v~~Qq~~I~~L~~~l~~L~~rl~~~   51 (69)
T PF04102_consen    4 ERIEELEIKLAFQEDTIEEL-------NDVVTEQQRQIDRLQRQLRLLRERLREL   51 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45556666655544444333       3333344444445555555555555444

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=91.65  E-value=1.9  Score=33.92  Aligned_cols=54  Identities=19%  Similarity=0.318  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHY--MNIESENSVLRAQLLELTQRLDSLND  109 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~--~~l~~EN~~Lraql~eL~~rl~~l~~  109 (163)
                      .+|..++..|+.++..|..++..|....  ..+..+...|+.++.+|..+|..|.+
T Consensus        82 ~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   82 KELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444444444444333322  34455555555555555555555543

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK00846 hypothetical protein; Provisional

Probab=91.53  E-value=2.2  Score=30.50  Aligned_cols=51  Identities=10%  Similarity=0.049  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL  107 (163)
Q Consensus        57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l  107 (163)
                      .++.++..|+.........|..|...+.....+...|+.++..|..+|+.+
T Consensus        10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~   60 (77)
T PRK00846         10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV   60 (77)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344555555444444444454444444444445555555555555544443

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=91.41  E-value=0.37  Score=39.02  Aligned_cols=53  Identities=23%  Similarity=0.367  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN  112 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~  112 (163)
                      |+|+|.+..+-=..|.-|..+|+    +-+.|..+++.||.++.+|+.++ .+.+.+.
T Consensus         2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~   54 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL-IVQEKLR   54 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH----------------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence            78999999988888988888883    35668888888888888888888 5554443

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=91.40  E-value=1.4  Score=29.46  Aligned_cols=38  Identities=24%  Similarity=0.315  Sum_probs=27.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           73 LTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI  110 (163)
Q Consensus        73 ~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i  110 (163)
                      ...+..|...+..|..+|..|+.++..|...+..|..-
T Consensus        25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e   62 (64)
T PF00170_consen   25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE   62 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34556677777778888888888888888877777654

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=91.11  E-value=1.6  Score=29.93  Aligned_cols=46  Identities=11%  Similarity=0.151  Sum_probs=25.7

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765           71 QILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT  116 (163)
Q Consensus        71 ~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~  116 (163)
                      .|..++.....-+..|...-.....++..|+.+++.|..-|..+..
T Consensus         8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   53 (69)
T PF04102_consen    8 ELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED   53 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3444455555555666666666666777777777777777777663

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=90.98  E-value=9.2  Score=32.65  Aligned_cols=44  Identities=23%  Similarity=0.282  Sum_probs=26.7

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041765           36 RMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNIT   79 (163)
Q Consensus        36 R~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l   79 (163)
                      ++..-.+.+++.=.-++..+++|+.+|.+++.+-+.+..++..+
T Consensus        35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~   78 (239)
T COG1579          35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA   78 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555556667777777777777776666655554443

>TIGR00219 mreC rod shape-determining protein MreC

Probab=90.95  E-value=0.68  Score=39.88  Aligned_cols=19  Identities=21%  Similarity=0.258  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHhHHHH
Q 041765           61 QVDQLRKENNQILTSVNIT   79 (163)
Q Consensus        61 qv~~L~~EN~~L~~~i~~l   79 (163)
                      .+.+|.+||.+|+.++..+
T Consensus        67 ~~~~l~~EN~~Lr~e~~~l   85 (283)
T TIGR00219        67 DVNNLEYENYKLRQELLKK   85 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4556777888877776555

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.89  E-value=3.3  Score=35.93  Aligned_cols=55  Identities=13%  Similarity=0.276  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN  112 (163)
Q Consensus        58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~  112 (163)
                      ++.+|..|..+-..+..++..+..++..+..+-..|..+|.+|..++...+++|.
T Consensus        50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~  104 (265)
T COG3883          50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK  104 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444555555555555555555555554443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.81  E-value=5.1  Score=30.66  Aligned_cols=15  Identities=40%  Similarity=0.474  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHH
Q 041765           91 SVLRAQLLELTQRLD  105 (163)
Q Consensus        91 ~~Lraql~eL~~rl~  105 (163)
                      ..|+.++.+|..|..
T Consensus        71 ~~L~~el~~l~~ry~   85 (120)
T PF12325_consen   71 EELEQELEELQQRYQ   85 (120)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444444444433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=90.80  E-value=5.2  Score=33.20  Aligned_cols=40  Identities=25%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765           58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL   97 (163)
Q Consensus        58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql   97 (163)
                      |..++..|+.+|..|......+..++..|..++..|+-|+
T Consensus       100 L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen  100 LVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence            4444444445555554444444444444444444444444

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.74  E-value=3  Score=36.13  Aligned_cols=47  Identities=11%  Similarity=0.332  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL  100 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL  100 (163)
                      .++.|..+|..+..+-..+..+++.+.+.+..+..+...|+..|.+.
T Consensus        53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r   99 (265)
T COG3883          53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER   99 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444433

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=90.72  E-value=7  Score=30.86  Aligned_cols=66  Identities=18%  Similarity=0.320  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           46 RSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        46 RSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      .-+..+++.++.+...+..+.++-..+...+.........+..+...+++....+...+..+++++
T Consensus       123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~  188 (191)
T PF04156_consen  123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELL  188 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555555555555554444444444444444444444444444444444444444444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=90.59  E-value=1.1  Score=34.17  Aligned_cols=47  Identities=23%  Similarity=0.257  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLE   99 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~e   99 (163)
                      ..+.+|+.++..+-++-..|+..+..+-+....|.-||..||.++.+
T Consensus         8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            35789999999999999999999999999999999999999999988

>PF15294 Leu_zip: Leucine zipper

Probab=90.49  E-value=1.2  Score=38.77  Aligned_cols=45  Identities=29%  Similarity=0.376  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ  102 (163)
Q Consensus        58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~  102 (163)
                      |..++..|+.||..|+.++..+..++.....|+..|.+++.+|+.
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888999999999999999999999999999999988888877

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=90.32  E-value=4.8  Score=28.90  Aligned_cols=57  Identities=18%  Similarity=0.238  Sum_probs=40.2

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQ-VDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND  109 (163)
Q Consensus        53 ~~l~eLe~q-v~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~  109 (163)
                      ..++.++.+ -..|..+-..|...+..|..++..+..||..|+.+-.-|+.-+..|-.
T Consensus         8 ~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~   65 (80)
T PF10224_consen    8 EDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS   65 (80)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444433 556777777788888888888888888888888887777776666643

The exact function is unknown.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=89.79  E-value=6.3  Score=34.91  Aligned_cols=46  Identities=17%  Similarity=0.353  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ  102 (163)
Q Consensus        57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~  102 (163)
                      +|...+..|+.+|..|+.++.....++..|..+|..||.....++.
T Consensus        24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~   69 (310)
T PF09755_consen   24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQA   69 (310)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444433333

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=89.27  E-value=1.8  Score=32.18  Aligned_cols=42  Identities=14%  Similarity=0.219  Sum_probs=24.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           71 QILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN  112 (163)
Q Consensus        71 ~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~  112 (163)
                      ++..++..++++...+..+|..|+.++..|+.....+.++..
T Consensus        31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR   72 (105)
T PRK00888         31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR   72 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence            344444444444555667777777777777765445555544

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=88.98  E-value=16  Score=33.71  Aligned_cols=85  Identities=16%  Similarity=0.180  Sum_probs=55.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 041765           32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRL----DSL  107 (163)
Q Consensus        32 Rk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl----~~l  107 (163)
                      ++++-+.++=+.-.++....++....|+.++..++.+...+..++.........+...+..+...+..|..+-    ..|
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L  117 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL  117 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666666666666666777778888888888888877777776666666666666666666665555433    344


Q ss_pred             HHHHHHHhc
Q 041765          108 NDILNFINT  116 (163)
Q Consensus       108 ~~il~~~~~  116 (163)
                      -.+|..+..
T Consensus       118 a~~L~A~~r  126 (420)
T COG4942         118 AEQLAALQR  126 (420)
T ss_pred             HHHHHHHHh
Confidence            455555543

>PRK00736 hypothetical protein; Provisional

Probab=88.92  E-value=5.1  Score=27.60  Aligned_cols=47  Identities=21%  Similarity=0.254  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      +++.+||.++.-.+.-...|       ...+..-..+...|..++..|..++..
T Consensus         5 ~Ri~~LE~klafqe~tie~L-------n~~v~~Qq~~i~~L~~ql~~L~~rl~~   51 (68)
T PRK00736          5 ERLTELEIRVAEQEKTIEEL-------SDQLAEQWKTVEQMRKKLDALTERFLS   51 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677777766555444333       333333333445555555555555544

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=88.88  E-value=5.7  Score=27.12  Aligned_cols=46  Identities=13%  Similarity=0.234  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ  102 (163)
Q Consensus        57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~  102 (163)
                      .+..++...+..|..+.+++.....+...|..+...|+.++.+++.
T Consensus        15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen   15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4555566677788888888877777777777777777777777654

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=88.43  E-value=13  Score=30.83  Aligned_cols=79  Identities=18%  Similarity=0.281  Sum_probs=50.7

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           33 KRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        33 k~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      |+-++..-.+-..|.-..-+.++..|...+..-+..-.....+-..+..+...|..|....++|+..|+.++..|+.-.
T Consensus       106 rR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~  184 (192)
T PF11180_consen  106 RRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA  184 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4445555555555555666666777777666666666666666666666666777777777777777777666666544

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=88.11  E-value=12  Score=30.35  Aligned_cols=56  Identities=16%  Similarity=0.273  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 041765           55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQ-LLELTQRLDSLNDI  110 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraq-l~eL~~rl~~l~~i  110 (163)
                      ..+|+.++..|+.++..|..++..++.++..++..+..+++. ......++..|...
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~  178 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ  178 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568888889999999999999888888888887777664433 33344444444443

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PRK02119 hypothetical protein; Provisional

Probab=87.87  E-value=4.8  Score=28.14  Aligned_cols=52  Identities=6%  Similarity=0.065  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      .++..-..|..++.....-+..|...-.....++..|+.+|..|..-+..+.
T Consensus         6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~   57 (73)
T PRK02119          6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ   57 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3444445555555555555555544445555555666666666666555544

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=87.82  E-value=0.02  Score=51.39  Aligned_cols=69  Identities=26%  Similarity=0.272  Sum_probs=55.4

Q ss_pred             hhHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           27 LAMDQRKRKRMQSNRESARR---SRMRKQKHLDDLIAQVDQLR-KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ  102 (163)
Q Consensus        27 ~~~deRk~rR~lsNReSARR---SR~RKq~~l~eLe~qv~~L~-~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~  102 (163)
                      .+.+.|+..|+.+|+.+|.+   +|.||+.....|..+|+.|+ .+|..                     |..++..|+.
T Consensus       149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~---------------------l~~~is~Lqn  207 (395)
T KOG1414|consen  149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSP---------------------LSPQISPLQN  207 (395)
T ss_pred             CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcc---------------------cCcccccccc
Confidence            36688999999999999999   99999999999999998877 44433                     6777777777


Q ss_pred             HHHHHHHHHHHHhc
Q 041765          103 RLDSLNDILNFINT  116 (163)
Q Consensus       103 rl~~l~~il~~~~~  116 (163)
                      ..+.++.++.....
T Consensus       208 e~~~l~~~l~~h~~  221 (395)
T KOG1414|consen  208 EADHLEKELNTHRP  221 (395)
T ss_pred             HHHHHHHHHhccCC
Confidence            77777777766543

>PRK09039 hypothetical protein; Validated

Probab=87.65  E-value=13  Score=32.96  Aligned_cols=44  Identities=14%  Similarity=0.182  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLL   98 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~   98 (163)
                      +.-|..+++.|+.+...|...|..++++.......-..|+.++.
T Consensus       139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~  182 (343)
T PRK09039        139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN  182 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.44  E-value=17  Score=31.78  Aligned_cols=71  Identities=13%  Similarity=0.192  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccCCC
Q 041765           50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR-------LDSLNDILNFINTSSGI  120 (163)
Q Consensus        50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r-------l~~l~~il~~~~~~~~~  120 (163)
                      +..+.+..|+.+...|..|-..|..+...+.+.-...-.+.+.+.-++.++.+.       +......|..+..++.+
T Consensus        61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~  138 (314)
T PF04111_consen   61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVY  138 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            344455555555555555555555555444444444444444444444444333       33444444445544443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=87.42  E-value=18  Score=35.54  Aligned_cols=32  Identities=13%  Similarity=0.247  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           76 VNITTQHYMNIESENSVLRAQLLELTQRLDSL  107 (163)
Q Consensus        76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l  107 (163)
                      +..+...+..+..+...+..++..+...+..+
T Consensus       450 l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l  481 (1164)
T TIGR02169       450 IKKQEWKLEQLAADLSKYEQELYDLKEEYDRV  481 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK00295 hypothetical protein; Provisional

Probab=87.35  E-value=7.1  Score=26.86  Aligned_cols=46  Identities=4%  Similarity=-0.009  Sum_probs=32.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           70 NQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        70 ~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      ..|..++.....-+..|...-.....++..|+.+|+.|..-+..+.
T Consensus         8 ~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295          8 TELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455556666666666666666667777888888888888777766

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=87.33  E-value=1.9  Score=36.34  Aligned_cols=7  Identities=14%  Similarity=0.487  Sum_probs=3.2

Q ss_pred             cCCCcCc
Q 041765          149 LNQPIMA  155 (163)
Q Consensus       149 ~~qpi~a  155 (163)
                      +++|+++
T Consensus       148 ~g~~Vv~  154 (276)
T PRK13922        148 KGMPVID  154 (276)
T ss_pred             CCCceEc
Confidence            3455443

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=87.31  E-value=0.87  Score=31.07  Aligned_cols=27  Identities=15%  Similarity=0.286  Sum_probs=14.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 041765           70 NQILTSVNITTQHYMNIESENSVLRAQ   96 (163)
Q Consensus        70 ~~L~~~i~~l~~~~~~l~~EN~~Lraq   96 (163)
                      ..|+.+|..|..+...|+.||..||..
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~   43 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQN   43 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344444555555555566666666653

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.17  E-value=16  Score=32.02  Aligned_cols=75  Identities=17%  Similarity=0.292  Sum_probs=54.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           36 RMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI  110 (163)
Q Consensus        36 R~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i  110 (163)
                      +....=+....-+..=.+.+..|+.+...|..+-.......+.+..+...+..|...|..++.-...+|..|..+
T Consensus        61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt  135 (314)
T PF04111_consen   61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT  135 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344444444445555556677788888888777778888888888888888888888888888888888776653

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=87.02  E-value=4.9  Score=38.11  Aligned_cols=56  Identities=23%  Similarity=0.389  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           47 SRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ  102 (163)
Q Consensus        47 SR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~  102 (163)
                      .|..-...+.+....+..++++...++.++..+......|..||..|+.++..++.
T Consensus       135 ~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~  190 (546)
T KOG0977|consen  135 ERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK  190 (546)
T ss_pred             HHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            33333344555666667777778888888888888888888888888888877764

>PRK02793 phi X174 lysis protein; Provisional

Probab=86.97  E-value=5.9  Score=27.56  Aligned_cols=52  Identities=10%  Similarity=0.132  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765           65 LRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT  116 (163)
Q Consensus        65 L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~  116 (163)
                      ++..-..|..++.....-+..|...-.....++..|+.+|+.|..-+..+..
T Consensus         6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   57 (72)
T PRK02793          6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP   57 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3444445555555555555555555555555666666666666666655543

>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]

Probab=86.89  E-value=5.3  Score=30.27  Aligned_cols=37  Identities=24%  Similarity=0.334  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 041765           60 AQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQ   96 (163)
Q Consensus        60 ~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraq   96 (163)
                      .+|-.|+.--..|..++...++....|.+||.+|-+=
T Consensus        63 tQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQY   99 (120)
T KOG3650|consen   63 TQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQY   99 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence            3444444444444444444444444555555555443

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=86.88  E-value=3.4  Score=37.28  Aligned_cols=33  Identities=27%  Similarity=0.250  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 041765           60 AQVDQLRKENNQILTSVNITTQHYMNIESENSVLR   94 (163)
Q Consensus        60 ~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lr   94 (163)
                      .+...|+.||..|+++++.|+.+++.|  ||..|+
T Consensus        32 ~e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~   64 (420)
T PF07407_consen   32 DENFALRMENHSLKKENNDLKIEVERL--ENEMLR   64 (420)
T ss_pred             hhhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence            356678889999999999998888888  666665

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=86.85  E-value=11  Score=34.62  Aligned_cols=72  Identities=17%  Similarity=0.221  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           40 NRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        40 NReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      ++...++-=.++...+..-..+...|+++-..+..++..++.++.....++..++.++..+..++..|...-
T Consensus        39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            344444444555555555555666666666666666666666666666666666666666666666665433

>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long)

Probab=86.70  E-value=3.4  Score=34.47  Aligned_cols=45  Identities=16%  Similarity=0.398  Sum_probs=33.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           67 KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      .||..|+..|..+.+.+..|..||..|+.    |...++.|-++|..+.
T Consensus       125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~e----lae~~~~la~~ie~l~  169 (200)
T PF07412_consen  125 EENEKLHKEIEQKDEEIAKLKEENEELKE----LAEHVQYLAEVIERLT  169 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence            57888888888777777777777777665    5666777777777764

Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=86.67  E-value=11  Score=36.57  Aligned_cols=53  Identities=19%  Similarity=0.293  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHYMNI-------ESENSVLRAQLLELTQRLDSLN  108 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l-------~~EN~~Lraql~eL~~rl~~l~  108 (163)
                      .+||.++..|+.|-.....++..++.+...+       ..+-..|..-|..++++-..|+
T Consensus       548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE  607 (697)
T PF09726_consen  548 RQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLE  607 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            3566666666655555444444444433221       2234445455555544444443

; GO: 0016021 integral to membrane

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=86.30  E-value=7.8  Score=31.52  Aligned_cols=8  Identities=13%  Similarity=-0.296  Sum_probs=3.1

Q ss_pred             CCCCCCCc
Q 041765           15 DGQNSASE   22 (163)
Q Consensus        15 ~~~~sgs~   22 (163)
                      .+..-+|+
T Consensus        55 ~YWsFps~   62 (188)
T PF03962_consen   55 YYWSFPSQ   62 (188)
T ss_pred             EEEecChH
Confidence            33433443

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=85.93  E-value=5.4  Score=40.55  Aligned_cols=59  Identities=24%  Similarity=0.305  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQ---HYMNIESENSVLRAQLLELTQRLDSLN  108 (163)
Q Consensus        50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~---~~~~l~~EN~~Lraql~eL~~rl~~l~  108 (163)
                      .+.++++.|+..+..|+.||..|..+|..|..   ....|+..|..|...-.+++.-+..|+
T Consensus       527 ~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~  588 (1195)
T KOG4643|consen  527 LLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALN  588 (1195)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            44578899999999999999999999998865   557778888888777777776666665

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=85.92  E-value=6.5  Score=33.86  Aligned_cols=20  Identities=25%  Similarity=0.615  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhH
Q 041765           57 DLIAQVDQLRKENNQILTSV   76 (163)
Q Consensus        57 eLe~qv~~L~~EN~~L~~~i   76 (163)
                      ++..++..+.+||..|..++
T Consensus       139 e~kekl~E~~~EkeeL~~el  158 (290)
T COG4026         139 ELKEKLEELQKEKEELLKEL  158 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444433333

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=85.88  E-value=8.4  Score=25.90  Aligned_cols=34  Identities=9%  Similarity=0.269  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           82 HYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        82 ~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      .+..++.||..|+..+.++.+.++.|-.+-..+.
T Consensus        15 ~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs   48 (55)
T PF05377_consen   15 SINTVKKENEEISESVEKIEENVKDLLSLYEVVS   48 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788899999999999988877766666554

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=85.74  E-value=11  Score=32.87  Aligned_cols=45  Identities=13%  Similarity=0.220  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL  100 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL  100 (163)
                      ..+..++...+.+-.+|..++..+...+..+..+...|.+++.++
T Consensus       219 ~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~  263 (325)
T PF08317_consen  219 AEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA  263 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333344444444444444333

>PRK04406 hypothetical protein; Provisional

Probab=85.73  E-value=8.6  Score=27.05  Aligned_cols=52  Identities=10%  Similarity=0.152  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      .++..-..|..++.....-+..|...-.....++..|+.+|+.|.+-+..+.
T Consensus         8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   59 (75)
T PRK04406          8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD   59 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3445555555555555555555555555555556666666666666555544

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=85.73  E-value=9.3  Score=27.62  Aligned_cols=31  Identities=26%  Similarity=0.374  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           83 YMNIESENSVLRAQLLELTQRLDSLNDILNF  113 (163)
Q Consensus        83 ~~~l~~EN~~Lraql~eL~~rl~~l~~il~~  113 (163)
                      ...+..+-..|+.++.++..++..+..-+..
T Consensus        69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~   99 (108)
T PF02403_consen   69 AEELKAEVKELKEEIKELEEQLKELEEELNE   99 (108)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555555544443

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=85.69  E-value=9.7  Score=26.40  Aligned_cols=43  Identities=23%  Similarity=0.291  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL  100 (163)
Q Consensus        58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL  100 (163)
                      .+.....|..|+.....++...-..+..|..||..|+.++.++
T Consensus        24 ~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen   24 HEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444555555555555555555555555555555554443

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=85.64  E-value=19  Score=29.73  Aligned_cols=19  Identities=21%  Similarity=0.424  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQ   71 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~   71 (163)
                      +.++.+..++..++..+..
T Consensus        84 ~~i~~~r~~l~~~~~~l~~  102 (302)
T PF10186_consen   84 KRIEQKRERLEELRESLEQ  102 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=85.64  E-value=0.13  Score=46.28  Aligned_cols=44  Identities=34%  Similarity=0.561  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQIL   73 (163)
Q Consensus        30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~   73 (163)
                      ++++++=..+||.||-++|.||+.....|+.+...+..+|..|.
T Consensus       283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~  326 (395)
T KOG1414|consen  283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL  326 (395)
T ss_pred             hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence            56666669999999999999999999999999988888887764

>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.54  E-value=9.9  Score=26.94  Aligned_cols=52  Identities=21%  Similarity=0.164  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN  108 (163)
Q Consensus        57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~  108 (163)
                      .|++++..|+..-..-...|..|...+......-..+++++.-|..++..++
T Consensus         5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~   56 (72)
T COG2900           5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ   56 (72)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3444444444433333344444444444444444555555555555554443

>PRK04325 hypothetical protein; Provisional

Probab=85.41  E-value=9.3  Score=26.70  Aligned_cols=52  Identities=10%  Similarity=0.076  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      .++..-..|..++.....-+..|...-.....++..|+.+|+.|.+-+..+.
T Consensus         6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~   57 (74)
T PRK04325          6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN   57 (74)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444445555555555555555555555555556666666666666565554

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=85.40  E-value=14  Score=28.83  Aligned_cols=31  Identities=16%  Similarity=0.292  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 041765           51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQ   81 (163)
Q Consensus        51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~   81 (163)
                      +-..+..|..++..|+.+...+...+..+..
T Consensus        33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~   63 (143)
T PF12718_consen   33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKE   63 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []

Probab=85.18  E-value=5.5  Score=28.45  Aligned_cols=32  Identities=19%  Similarity=0.307  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           84 MNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        84 ~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      ..+..||..|+.++..|.++|+.+..=.+..+
T Consensus         3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~   34 (76)
T PF07334_consen    3 HEIQEENARLKEEIQKLEAELQQNKREFQIKE   34 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            45667888888888888888888776555444

This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=85.06  E-value=34  Score=32.61  Aligned_cols=34  Identities=15%  Similarity=0.250  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765           64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQL   97 (163)
Q Consensus        64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql   97 (163)
                      .+..|+..|..+...+..++..|+.+...|..+.
T Consensus       203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=85.00  E-value=12  Score=26.99  Aligned_cols=78  Identities=17%  Similarity=0.282  Sum_probs=49.7

Q ss_pred             HhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 041765           39 SNRESARRSRMRKQ------KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIES---ENSVLRAQLLELTQRLDSLND  109 (163)
Q Consensus        39 sNReSARRSR~RKq------~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~---EN~~Lraql~eL~~rl~~l~~  109 (163)
                      .|.+..+.+-.++.      ..+-+|..+...+..+-+.|+.+-+.+..++..+..   +-..|++++.++..++..+..
T Consensus         9 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~   88 (108)
T PF02403_consen    9 ENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE   88 (108)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence            35555555544442      344455555666666666666666666666655554   467788888888888888888


Q ss_pred             HHHHHhc
Q 041765          110 ILNFINT  116 (163)
Q Consensus       110 il~~~~~  116 (163)
                      .+..++.
T Consensus        89 ~~~~~e~   95 (108)
T PF02403_consen   89 QLKELEE   95 (108)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777653

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=84.92  E-value=12  Score=35.87  Aligned_cols=68  Identities=16%  Similarity=0.279  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765           49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT  116 (163)
Q Consensus        49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~  116 (163)
                      .+.++.+++|..++..|..+-..+...+..++..+..+..+....+.+..+|...+.-...++.++..
T Consensus       324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d  391 (594)
T PF05667_consen  324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPD  391 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34566777788888888888777777777777777778888888888888887777777777666543

>PRK00736 hypothetical protein; Provisional

Probab=84.85  E-value=9.3  Score=26.27  Aligned_cols=46  Identities=9%  Similarity=0.149  Sum_probs=29.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765           71 QILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT  116 (163)
Q Consensus        71 ~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~  116 (163)
                      .|..++.....-+..|...-..-..++..|+.+|+.|.+-+..+..
T Consensus         9 ~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~   54 (68)
T PRK00736          9 ELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE   54 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3444555555555556555555566678888888888887776654

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=84.68  E-value=4.3  Score=34.21  Aligned_cols=50  Identities=18%  Similarity=0.251  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL  107 (163)
Q Consensus        58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l  107 (163)
                      |+++.+.+..+-..|..++......+.....++..|+.|.+.+......|
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL  198 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL  198 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence            34444444444444555555555555555555555555555555444333

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=84.59  E-value=27  Score=30.66  Aligned_cols=76  Identities=20%  Similarity=0.184  Sum_probs=41.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------H-----------HHHHHHHHHHHHHH
Q 041765           33 KRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNIT-------T-----------QHYMNIESENSVLR   94 (163)
Q Consensus        33 k~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l-------~-----------~~~~~l~~EN~~Lr   94 (163)
                      -+.+-+.-|+--..+..--.++-.+|+.++.+++..|..|..+++.+       +           ++...|+.+|+.++
T Consensus        25 ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~  104 (333)
T KOG1853|consen   25 YKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTH  104 (333)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555555555554444444443332       2           22445677777777


Q ss_pred             HHHHHHHHHHHHHH
Q 041765           95 AQLLELTQRLDSLN  108 (163)
Q Consensus        95 aql~eL~~rl~~l~  108 (163)
                      +....|+..+..|.
T Consensus       105 aikeql~kyiReLE  118 (333)
T KOG1853|consen  105 AIKEQLRKYIRELE  118 (333)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777766655554

>smart00787 Spc7 Spc7 kinetochore protein

Probab=84.46  E-value=12  Score=32.84  Aligned_cols=58  Identities=17%  Similarity=0.173  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      .+..+..++..+..++......+..++.+...+...-....++..++...++.+..++
T Consensus       205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~  262 (312)
T smart00787      205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL  262 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555555555555555555555555555555544443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=84.43  E-value=15  Score=32.48  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=16.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           68 ENNQILTSVNITTQHYMNIESENSVLRAQLL   98 (163)
Q Consensus        68 EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~   98 (163)
                      |...|..++-.+++++..+..||..|..++.
T Consensus       235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~  265 (306)
T PF04849_consen  235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQ  265 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3334555555555555555556555554443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=84.35  E-value=4.4  Score=38.67  Aligned_cols=64  Identities=22%  Similarity=0.190  Sum_probs=37.6

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ  102 (163)
Q Consensus        28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~  102 (163)
                      .+|.+-.||-+         ||=|...-.++-.+.+  +..-..|..+++.+.+.++.|..||..||.|+.+|..
T Consensus       274 ~~d~kv~krqQ---------RmIKNResA~~SRkKK--KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~  337 (655)
T KOG4343|consen  274 GSDIKVLKRQQ---------RMIKNRESACQSRKKK--KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVS  337 (655)
T ss_pred             ccCHHHHHHHH---------HHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            45777777643         3444444444432211  1223346777777777777777777777777777654

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.30  E-value=13  Score=33.62  Aligned_cols=58  Identities=12%  Similarity=0.231  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      .|.++.++.+.++.+.|+.--+.|..-.+.+....+.|+.+-..|...+.-|..+++.
T Consensus       221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e  278 (365)
T KOG2391|consen  221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE  278 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3344555666665555555555555555555555555555555555555555555444

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=84.24  E-value=22  Score=31.44  Aligned_cols=74  Identities=19%  Similarity=0.227  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           41 RESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI  114 (163)
Q Consensus        41 ReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~  114 (163)
                      -|+++|-....+.++.+++.-...-+..-..-..+-..+.+++..+.+||-.|++|+.....+...-..++--+
T Consensus       181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vini  254 (305)
T PF14915_consen  181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINI  254 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            45667766677777777776554444444445556677889999999999999999999999888777554433

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=84.09  E-value=7.4  Score=33.18  Aligned_cols=18  Identities=6%  Similarity=0.106  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 041765           54 HLDDLIAQVDQLRKENNQ   71 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~   71 (163)
                      +..+||+++..+..+...
T Consensus        94 Rn~ELE~elr~~~~~~~~  111 (248)
T PF08172_consen   94 RNAELEEELRKQQQTISS  111 (248)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            345677766655544444

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]

Probab=83.98  E-value=6.4  Score=29.86  Aligned_cols=50  Identities=18%  Similarity=0.199  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           61 QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI  110 (163)
Q Consensus        61 qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i  110 (163)
                      +...|-.+.-+|...+..|.++...+..||-.||.+-.-|.+-+..|-+.
T Consensus        57 EKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa  106 (120)
T KOG3650|consen   57 EKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA  106 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence            33445555555666666666666666666666666655555544444433

>PHA03011 hypothetical protein; Provisional

Probab=83.84  E-value=10  Score=28.84  Aligned_cols=54  Identities=28%  Similarity=0.331  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      ..+++|..+...|-.|-+-+..++..+..-.+.-..|-.-||+++..|+..+..
T Consensus        64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN  117 (120)
T PHA03011         64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN  117 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence            457777778777877777777777777776666667777777777777766543

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=83.76  E-value=4.2  Score=26.36  Aligned_cols=30  Identities=23%  Similarity=0.292  Sum_probs=21.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           73 LTSVNITTQHYMNIESENSVLRAQLLELTQ  102 (163)
Q Consensus        73 ~~~i~~l~~~~~~l~~EN~~Lraql~eL~~  102 (163)
                      ...+..+...+..|..+|..|+.++..|..
T Consensus        24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~   53 (54)
T PF07716_consen   24 KQREEELEQEVQELEEENEQLRQEIAQLER   53 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344556666777778888888888777764

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=83.76  E-value=5.7  Score=26.70  Aligned_cols=39  Identities=13%  Similarity=0.256  Sum_probs=19.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI  110 (163)
Q Consensus        72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i  110 (163)
                      +..++..++.++..+..+|..|+.++..|+.--..+..+
T Consensus        22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~   60 (80)
T PF04977_consen   22 LNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKV   60 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            334444444455555566666666666663333333333

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=83.38  E-value=7.2  Score=33.17  Aligned_cols=48  Identities=10%  Similarity=0.135  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL  100 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL  100 (163)
                      +-+-+|..++..|+.|...|+-.++.+..++..+......|-.++..+
T Consensus        54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r  101 (263)
T PRK10803         54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL  101 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678888888888888888877777766666666665555555543

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=83.28  E-value=13  Score=26.06  Aligned_cols=63  Identities=13%  Similarity=0.200  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT  116 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~  116 (163)
                      -++++...+..++.+-..+..+++.+..+...+..+-..-...+..+-+.+..+.+.++.+++
T Consensus        27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~~   89 (90)
T PF06103_consen   27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELNS   89 (90)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence            355666666666666666666666666665556555555566666666666666666665553

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=83.24  E-value=15  Score=35.26  Aligned_cols=43  Identities=14%  Similarity=0.385  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH------------------------HHHHHHHhHHHHHHHHHHHHHHHH
Q 041765           49 MRKQKHLDDLIAQVDQLRK------------------------ENNQILTSVNITTQHYMNIESENS   91 (163)
Q Consensus        49 ~RKq~~l~eLe~qv~~L~~------------------------EN~~L~~~i~~l~~~~~~l~~EN~   91 (163)
                      ..+..+|.+|+..+..+..                        .|..|+.++..+...+..|..+|.
T Consensus       118 ~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~  184 (617)
T PF15070_consen  118 QEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENM  184 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3566777777776666543                        455566666666666666666663

>PRK04863 mukB cell division protein MukB; Provisional

Probab=83.15  E-value=31  Score=36.47  Aligned_cols=88  Identities=8%  Similarity=0.071  Sum_probs=39.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHH
Q 041765           32 RKRKRMQSNRESARRSRMRKQK-------------HLDDLIAQVDQLRKENNQILTSVNIT-------TQHYMNIESENS   91 (163)
Q Consensus        32 Rk~rR~lsNReSARRSR~RKq~-------------~l~eLe~qv~~L~~EN~~L~~~i~~l-------~~~~~~l~~EN~   91 (163)
                      ++.+.+.+.++.|++.+.-+.+             .+++|+.++.....+...+..++..+       .+++..+..+..
T Consensus       321 ~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa  400 (1486)
T PRK04863        321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA  400 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666677666544332             22333333333333333333333333       333334434444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 041765           92 VLRAQLLELTQRLDSLNDILNFINTSSG  119 (163)
Q Consensus        92 ~Lraql~eL~~rl~~l~~il~~~~~~~~  119 (163)
                      .+...+..++.++..+...+..+.....
T Consensus       401 elqqel~elQ~el~q~qq~i~~Le~~~~  428 (1486)
T PRK04863        401 DYQQALDVQQTRAIQYQQAVQALERAKQ  428 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555555555555555444433

>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants

Probab=83.02  E-value=18  Score=32.32  Aligned_cols=55  Identities=22%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVL---------------RAQLLELTQRLDSLNDI  110 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~L---------------raql~eL~~rl~~l~~i  110 (163)
                      ..|..++..|+.+|..|...+..+..+++.+..+...+               |++|.+|+..|..+...
T Consensus       140 ~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~  209 (342)
T PF06632_consen  140 SRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEE  209 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcc
Confidence            34444444555555555555555555554444444333               55666666666665553

XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=82.84  E-value=6.2  Score=31.54  Aligned_cols=50  Identities=26%  Similarity=0.357  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD  105 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~  105 (163)
                      .+|..+|..|+.+|..|...+..+..+...++.....|+.+...+..+-.
T Consensus        92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~  141 (158)
T PF09744_consen   92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERER  141 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence            35666777777777777776666666666677666677766666665543

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=82.59  E-value=16  Score=26.42  Aligned_cols=71  Identities=13%  Similarity=0.218  Sum_probs=51.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           31 QRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT  101 (163)
Q Consensus        31 eRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~  101 (163)
                      .++..+.+.+=+++=..|--+.....+++.++..|......|-.++.....++..|+.-|..+...+...-
T Consensus        10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~   80 (89)
T PF13747_consen   10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI   80 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666776666655555568999999999999988888888777777777777766666655443

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=82.55  E-value=12  Score=27.28  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 041765           65 LRKENNQILTSVNITTQ------HYMNIESENSVLRAQLLELTQR  103 (163)
Q Consensus        65 L~~EN~~L~~~i~~l~~------~~~~l~~EN~~Lraql~eL~~r  103 (163)
                      +..+|..|..+|..|..      .+.....||..|+.++..|+.-
T Consensus        22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f   66 (86)
T PF12711_consen   22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSF   66 (86)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666654      3456788999999998877653

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=82.53  E-value=29  Score=35.55  Aligned_cols=52  Identities=23%  Similarity=0.281  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           49 MRKQKHLDDLIAQV-DQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL  100 (163)
Q Consensus        49 ~RKq~~l~eLe~qv-~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL  100 (163)
                      .+..+.+.+++++. ..+..+-.++..++..|.++.+.++..+..|+++..++
T Consensus       375 d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~  427 (1074)
T KOG0250|consen  375 DRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV  427 (1074)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444433 33333333444444444555555555555554444433

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=82.36  E-value=7.5  Score=28.84  Aligned_cols=33  Identities=18%  Similarity=0.170  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           76 VNITTQHYMNIESENSVLRAQLLELTQRLDSLN  108 (163)
Q Consensus        76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~  108 (163)
                      +..+.+++..++.+|..|+++...|..++..|+
T Consensus        29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~   61 (105)
T PRK00888         29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK   61 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444455555555555555555555555543

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=82.35  E-value=21  Score=30.15  Aligned_cols=8  Identities=25%  Similarity=0.177  Sum_probs=2.8

Q ss_pred             HHHHHHHH
Q 041765           89 ENSVLRAQ   96 (163)
Q Consensus        89 EN~~Lraq   96 (163)
                      |-.+|.++
T Consensus       194 EydrLlee  201 (216)
T KOG1962|consen  194 EYDRLLEE  201 (216)
T ss_pred             HHHHHHHH
Confidence            33333333

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana

Probab=82.13  E-value=5.8  Score=35.38  Aligned_cols=49  Identities=12%  Similarity=0.325  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           63 DQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        63 ~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      ..|+..|.+|..+|.+-.+...-|+.-|.+=-.+++.|.+-+..|++.+
T Consensus         3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEai   51 (351)
T PF07058_consen    3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAI   51 (351)
T ss_pred             hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555554444444444444444444455555444444433

>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins

Probab=82.00  E-value=1.8  Score=27.79  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLL   98 (163)
Q Consensus        64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~   98 (163)
                      +|-+.|..+..++..++..+..|..||..||+++.
T Consensus        11 ~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~   45 (46)
T PF07558_consen   11 ELAKRNSALSIKIQELENEVSKLLNENVNLRELVL   45 (46)
T ss_dssp             -------------------HHHHHHHHHHHHHHHH
T ss_pred             HHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence            34455666666666666666667777777776653

Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.

>PF14988 DUF4515: Domain of unknown function (DUF4515)

Probab=81.99  E-value=25  Score=29.11  Aligned_cols=51  Identities=22%  Similarity=0.176  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      ..+..-...+..||..|...+..+.+.+..|+..+..|..+-..|...-..
T Consensus       152 ~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~  202 (206)
T PF14988_consen  152 KSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWY  202 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555667777777777777777777777777777776666655443

>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore

Probab=81.88  E-value=15  Score=26.93  Aligned_cols=39  Identities=15%  Similarity=0.131  Sum_probs=20.4

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI  110 (163)
Q Consensus        72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i  110 (163)
                      ...++..+..+...+..||..|+.++..-+..-+.|-.+
T Consensus        47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~l   85 (87)
T PF12709_consen   47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKL   85 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444455555555556666666665555554444433

Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=81.78  E-value=35  Score=29.77  Aligned_cols=28  Identities=21%  Similarity=0.316  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITT   80 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~   80 (163)
                      ..++.+..++.+.+.+-..+..++....
T Consensus       207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~  234 (269)
T PF05278_consen  207 EELEELEEELKQKEKEVKEIKERITEMK  234 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444444443333

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=81.64  E-value=13  Score=31.62  Aligned_cols=8  Identities=0%  Similarity=0.509  Sum_probs=3.2

Q ss_pred             HHHHhccC
Q 041765          111 LNFINTSS  118 (163)
Q Consensus       111 l~~~~~~~  118 (163)
                      +.++.++.
T Consensus       130 iRylqSY~  137 (248)
T PF08172_consen  130 IRYLQSYN  137 (248)
T ss_pred             HHHHhhCc
Confidence            34444433

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PF14257 DUF4349: Domain of unknown function (DUF4349)

Probab=81.62  E-value=13  Score=31.12  Aligned_cols=63  Identities=24%  Similarity=0.411  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNIT--TQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l--~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      ..+-+++.+++.++.+-..|..-+...  .+....++.+....+.+++.+..+++.|.+.+++-.
T Consensus       132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~st  196 (262)
T PF14257_consen  132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYST  196 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEE
Confidence            344466667777666666655544332  455667888888899999999999988888887643

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=81.60  E-value=9.6  Score=31.54  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           77 NITTQHYMNIESENSVLRAQLLELTQRLDSLNDI  110 (163)
Q Consensus        77 ~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i  110 (163)
                      ..|..++..+...|-.+..-+..|..++..+..-
T Consensus       178 ~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~  211 (221)
T PF05700_consen  178 RYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK  211 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555555555555554443

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=81.55  E-value=13  Score=36.64  Aligned_cols=66  Identities=20%  Similarity=0.336  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI  114 (163)
Q Consensus        49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~  114 (163)
                      .||+..+..|..++..+...+..++..|..+...+...+.++..|.+.+..|+.+|..-+..+.-.
T Consensus       297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk  362 (775)
T PF10174_consen  297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKK  362 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            567777788888888888888888888888888888888888888888888777777766666543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=81.43  E-value=13  Score=32.60  Aligned_cols=63  Identities=21%  Similarity=0.264  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCCC
Q 041765           58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN---TSSGI  120 (163)
Q Consensus        58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~---~~~~~  120 (163)
                      |..+|..|+..-..|...+..+...+...-.+-..+|..+..|+.++..|...|..-.   .-+|+
T Consensus       110 l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGl  175 (302)
T PF09738_consen  110 LMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGL  175 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCe
Confidence            4445555555555555555555555555555666777777888888888887776432   34565

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=81.28  E-value=11  Score=25.32  Aligned_cols=26  Identities=19%  Similarity=0.518  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNI   78 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~   78 (163)
                      +.+.+|+.+++.++.+|..|..++..
T Consensus        24 ~ei~~l~~~i~~l~~e~~~L~~ei~~   49 (80)
T PF04977_consen   24 QEIAELQKEIEELKKENEELKEEIER   49 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444433

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=81.26  E-value=6.9  Score=26.95  Aligned_cols=35  Identities=14%  Similarity=0.187  Sum_probs=24.7

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           68 ENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ  102 (163)
Q Consensus        68 EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~  102 (163)
                      ....+..++..+.++...+..||..|+.++..|..
T Consensus        25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~   59 (85)
T TIGR02209        25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR   59 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34455566666667777778888888888887765

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.11  E-value=28  Score=34.90  Aligned_cols=52  Identities=15%  Similarity=0.157  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           47 SRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLL   98 (163)
Q Consensus        47 SR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~   98 (163)
                      -+.+-.-.++.|...+..|+-||.+|..+++.....+..+..++..|+.|+.
T Consensus       665 lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg  716 (970)
T KOG0946|consen  665 LIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG  716 (970)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344445556666666666666666666666666666666666666666665

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.07  E-value=17  Score=25.85  Aligned_cols=49  Identities=14%  Similarity=0.114  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR  103 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r  103 (163)
                      ++.|+.+|.+.-.-..-|..+|..|+++...|..|-..++.....|..+
T Consensus         6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~e   54 (79)
T COG3074           6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERE   54 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence            4566666655433333344444444444333333333333333333333

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=80.97  E-value=21  Score=29.01  Aligned_cols=43  Identities=21%  Similarity=0.306  Sum_probs=22.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           70 NQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN  112 (163)
Q Consensus        70 ~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~  112 (163)
                      ..|..-+..|.+++......|..|...+..|+..+..+.+-|.
T Consensus        77 ~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~  119 (182)
T PF15035_consen   77 EELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE  119 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555555555555555555555555555444433

>PRK03918 chromosome segregation protein; Provisional

Probab=80.93  E-value=29  Score=33.52  Aligned_cols=13  Identities=15%  Similarity=0.100  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q 041765           90 NSVLRAQLLELTQ  102 (163)
Q Consensus        90 N~~Lraql~eL~~  102 (163)
                      -..|..++..|..
T Consensus       682 ~~~l~~~i~~l~~  694 (880)
T PRK03918        682 LEELEKRREEIKK  694 (880)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=80.61  E-value=31  Score=28.46  Aligned_cols=14  Identities=36%  Similarity=0.693  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHHH
Q 041765           55 LDDLIAQVDQLRKE   68 (163)
Q Consensus        55 l~eLe~qv~~L~~E   68 (163)
                      +..|..++..++.+
T Consensus        72 ~~~l~~~i~~~~~~   85 (302)
T PF10186_consen   72 LERLRERIERLRKR   85 (302)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=80.58  E-value=26  Score=32.29  Aligned_cols=58  Identities=17%  Similarity=0.189  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI  110 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i  110 (163)
                      ++..+-..-+..|++|..+|..+|..-.++....+.+...|..++.+-+.|-.++..+
T Consensus       132 qdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~m  189 (561)
T KOG1103|consen  132 QDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLM  189 (561)
T ss_pred             hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333445678999999999999999999999999999999998887776666543

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=80.49  E-value=15  Score=32.30  Aligned_cols=21  Identities=29%  Similarity=0.400  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 041765           87 ESENSVLRAQLLELTQRLDSL  107 (163)
Q Consensus        87 ~~EN~~Lraql~eL~~rl~~l  107 (163)
                      ..|..++..++..|..++..|
T Consensus       290 ~~E~~RW~~~~~~l~~~~~~l  310 (344)
T PF12777_consen  290 SGEKERWSEQIEELEEQLKNL  310 (344)
T ss_dssp             HHHHHCCHCHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHhccc
Confidence            344444444444444444443

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>smart00340 HALZ homeobox associated leucin zipper

Probab=80.47  E-value=4.4  Score=26.05  Aligned_cols=26  Identities=19%  Similarity=0.302  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           77 NITTQHYMNIESENSVLRAQLLELTQ  102 (163)
Q Consensus        77 ~~l~~~~~~l~~EN~~Lraql~eL~~  102 (163)
                      ..|+.-++.|..||..|..++.+|+.
T Consensus         8 e~LKrcce~LteeNrRL~ke~~eLra   33 (44)
T smart00340        8 ELLKRCCESLTEENRRLQKEVQELRA   33 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34666778888999999999888864

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=80.40  E-value=4.1  Score=31.24  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=20.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765           67 KENNQILTSVNITTQHYMNIESENSVLRAQL   97 (163)
Q Consensus        67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql   97 (163)
                      .|..-|+.+|.+|.++...|+.||..||.-+
T Consensus        67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~   97 (123)
T KOG4797|consen   67 EEVEVLKEQIRELEERNSALERENSLLKTLA   97 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3444556666666666777888888887644

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=80.33  E-value=22  Score=33.73  Aligned_cols=64  Identities=11%  Similarity=0.086  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           52 QKHLDDLIAQVDQLRKENNQILTSVNIT-------TQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l-------~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      ++.++.||.++..|+.+-..|..++..-       ...+..+..|-..++.++.++-.++..|.+.+.-++
T Consensus       562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~  632 (638)
T PRK10636        562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML  632 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456778888888888887777776432       114667777888899999999999999888777665

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=80.31  E-value=15  Score=30.11  Aligned_cols=14  Identities=43%  Similarity=0.641  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHHH
Q 041765           94 RAQLLELTQRLDSL  107 (163)
Q Consensus        94 raql~eL~~rl~~l  107 (163)
                      ++++..+..+|..|
T Consensus        92 k~rl~~~ek~l~~L  105 (201)
T PF13851_consen   92 KARLKELEKELKDL  105 (201)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=80.11  E-value=27  Score=27.47  Aligned_cols=60  Identities=17%  Similarity=0.209  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765           57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT  116 (163)
Q Consensus        57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~  116 (163)
                      .+.......+++...|..++..++.....+..|-..|+.+-..|...++....-+.-+..
T Consensus        42 ~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~  101 (140)
T PF10473_consen   42 CLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES  101 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444555555555555555555555555555555555555554444443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=80.07  E-value=53  Score=30.79  Aligned_cols=51  Identities=18%  Similarity=0.150  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD  105 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~  105 (163)
                      .+.|+.++.+|..||..|+..+..|...+..+..+-..+-.++..|+.++.
T Consensus       299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~  349 (502)
T KOG0982|consen  299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI  349 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            345556677777888888888888887777777777666666655555543

>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []

Probab=80.03  E-value=1  Score=33.35  Aligned_cols=45  Identities=20%  Similarity=0.418  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL   97 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql   97 (163)
                      .+|+.|...+..|..+|..|..++..+..++..+......|+..+
T Consensus        25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l   69 (131)
T PF05103_consen   25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL   69 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence            577788888888887777777666655555555444444444443

Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	1e-10
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	2e-10
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	3e-10
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	1e-07
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	1e-07
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	3e-07
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	1e-06
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	2e-06
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	5e-06
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	5e-05
2wt7_B	90	Transcription factor MAFB; transcription, transcri	6e-05

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 53.1 bits (128), Expect = 1e-10
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 32  RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENS 91
           +K K+M+ N+ +A R R +K+   + L  +  +L K+N  +    +       ++  E  
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERAD-------SLAKEIQ 54

Query: 92  VLRAQLLEL 100
            L+  + E+
Sbjct: 55  YLKDLIEEV 63

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 52.7 bits (127), Expect = 2e-10
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 7/67 (10%)

Query: 32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENS 91
          ++RK ++ NR +A RSR +++  +  L  + + L   N Q+ + V         + +E +
Sbjct: 1  KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVT-------LLRNEVA 53

Query: 92 VLRAQLL 98
           L+  LL
Sbjct: 54 QLKQLLL 60

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 52.0 bits (125), Expect = 3e-10
 Identities = 13/46 (28%), Positives = 27/46 (58%)

Query: 32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVN 77
          ++  R+  NRE+AR SR +K++++  L  +V  L  +N  ++  + 
Sbjct: 1  KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELK 46

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 7/68 (10%)

Query: 32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENS 91
          +  ++   NR +A +SR RK + +  L  +V  L+ +N+++ ++ N        +  + +
Sbjct: 1  KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTAN-------MLREQVA 53

Query: 92 VLRAQLLE 99
           L+ +++ 
Sbjct: 54 QLKQKVMN 61

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 31 QRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESEN 90
          +++R R + N+ +A + R R+++  D L A+ DQL  E + + T +        N+  E 
Sbjct: 1  EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIA-------NLLKEK 53

Query: 91 SVLRAQLLE 99
            L   L  
Sbjct: 54 EKLEFILAA 62

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVN 77
          D    KR + N E+ARRSR RK + +  L  +V++L  +N  +   V 
Sbjct: 8  DPAALKRAR-NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVA 54

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 30  DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESE 89
               + R + N  + R+SR + +    +   +V +L  EN ++   V         +  E
Sbjct: 13  SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE-------QLSRE 65

Query: 90  NSVLRAQLLELTQRL 104
            S LR    +L + L
Sbjct: 66  LSTLRNLFKQLPEPL 80

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 42.3 bits (99), Expect = 2e-06
 Identities = 18/65 (27%), Positives = 29/65 (44%)

Query: 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESE 89
           +   KR   NR + R  R RK+ HL  L  QV  L++ ++      +   Q    +E E
Sbjct: 6  QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65

Query: 90 NSVLR 94
            +L+
Sbjct: 66 LRILK 70

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 42.3 bits (99), Expect = 5e-06
 Identities = 12/73 (16%), Positives = 31/73 (42%)

Query: 30  DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESE 89
             ++R+R   NR  A   R+++    ++L  Q  +L++E  ++ +           + S+
Sbjct: 35  QLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSK 94

Query: 90  NSVLRAQLLELTQ 102
              L+     + +
Sbjct: 95  YEALQNFARTVAR 107

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 39.1 bits (91), Expect = 5e-05
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 29  MDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIES 88
                + R + N  + R+SR + +    +   +V +L  EN ++   V         +  
Sbjct: 12  HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE-------QLSR 64

Query: 89  ENSVLRAQLLEL 100
           E S LR    +L
Sbjct: 65  ELSTLRNLFKQL 76

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 38.8 bits (90), Expect = 6e-05
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 29  MDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIES 88
           +  ++++R   NR  A+  R ++ +    L  +  QL ++  Q              ++ 
Sbjct: 24  IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQ--------------LKQ 69

Query: 89  ENSVLRAQLLELTQRLDSL 107
           E S L  +      + + L
Sbjct: 70  EVSRLARERDAYKVKSEKL 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.58
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.44
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.34
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.34
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.27
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	99.26
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	99.14
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.81
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.75
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.56
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.22
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.0
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	96.82
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	96.74
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	96.16
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	96.12
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.81
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	95.3
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	95.03
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	94.98
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	94.76
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	94.53
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	94.53
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	94.3
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	94.21
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	94.09
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	93.74
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.58
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	93.37
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.21
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	92.16
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	92.13
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	92.08
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	92.05
1p9i_A	31	Cortexillin I/GCN4 hybrid peptide; coiled-coil, un	91.92
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	91.9
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	91.63
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	91.49
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	91.21
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	91.05
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	90.76
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	90.71
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	90.71
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	90.53
3m48_A	33	General control protein GCN4; leucine zipper, synt	90.48
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	90.43
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	89.91
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	89.85
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	89.69
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	89.68
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	89.65
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	89.59
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	89.51
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	89.43
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	89.36
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	89.03
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	88.93
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	88.35
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	88.13
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	87.92
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	87.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	87.7
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	87.66
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	87.64
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	87.48
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	87.19
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	87.19
2wvr_A	209	Geminin; DNA replication license, DNA replication	87.12
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	86.95
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	86.11
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	85.63
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	85.35
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	85.34
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	85.23
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	85.14
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	85.03
2hy6_A	34	General control protein GCN4; protein design, para	85.03
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	84.94
3ra3_A	28	P1C; coiled coil domain, fiber, KIH interactions,	84.34
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	84.23
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	84.08
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	83.99
2bni_A	34	General control protein GCN4; four helix bundle, a	83.97
3m48_A	33	General control protein GCN4; leucine zipper, synt	83.95
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	83.82
1fmh_A	33	General control protein GCN4; coiled coil, leucine	83.63
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	83.6
1uo4_A	34	General control protein GCN4; four helix bundle, c	83.55
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	83.27
1uii_A	83	Geminin; human, DNA replication, cell cycle; 2.00A	82.69
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	82.68
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	82.36
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	82.13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	81.99
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	81.89
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	81.86
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	81.54
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	81.47
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	81.11
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	81.08
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	80.78
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	80.73
3bas_A	89	Myosin heavy chain, striated muscle/general contro	80.7
1a93_B	34	MAX protein, coiled coil, LZ; leucine zipper, 2D s	80.62
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	80.45
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	80.41
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	80.39
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	80.33
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	80.2
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	80.12
2wuj_A	57	Septum site-determining protein diviva; bacterial	80.02

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.58  E-value=2.2e-15  Score=99.81  Aligned_cols=52  Identities=27%  Similarity=0.479  Sum_probs=46.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041765           32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHY   83 (163)
Q Consensus        32 Rk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~   83 (163)
                      |+.+|+++||+||++||+||++|+++|+.+|..|+.||..|..++..|++.+
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999988888877766543

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.44  E-value=5e-13  Score=90.35  Aligned_cols=48  Identities=29%  Similarity=0.459  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765           31 QRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNI   78 (163)
Q Consensus        31 eRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~   78 (163)
                      |||++|+.+||+||++||.||++++.+|+.+|..|+.+|..|..++..
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~   48 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIAN   48 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999988888776665543

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.34  E-value=5.3e-12  Score=84.55  Aligned_cols=47  Identities=28%  Similarity=0.484  Sum_probs=42.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765           32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNI   78 (163)
Q Consensus        32 Rk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~   78 (163)
                      ||.+|+.+||+||++||.||++++++|+.+|..|+.+|..|..++..
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~   47 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTL   47 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999888887766654

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.34  E-value=2.2e-12  Score=87.51  Aligned_cols=47  Identities=30%  Similarity=0.401  Sum_probs=39.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041765           36 RMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQH   82 (163)
Q Consensus        36 R~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~   82 (163)
                      +..+||+||+|||.||++|+++|+.+|..|+.+|..|..++..|.++
T Consensus        13 KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~   59 (63)
T 2dgc_A           13 KRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL   59 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33559999999999999999999999999998888877766655544

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.27  E-value=1.4e-11  Score=82.79  Aligned_cols=48  Identities=25%  Similarity=0.423  Sum_probs=41.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041765           33 KRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITT   80 (163)
Q Consensus        33 k~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~   80 (163)
                      +.+|+.+||+||++||.||++++++|+.+|..|+.+|..|..++..|.
T Consensus         2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~   49 (62)
T 1jnm_A            2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLR   49 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888999999999999999999999999999999888777665433

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=99.26  E-value=7e-12  Score=86.82  Aligned_cols=61  Identities=33%  Similarity=0.412  Sum_probs=49.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        32 Rk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      ...||+..||.|+|.+|.||++|+.+|+.+|..|+.++..|              ..||..|+.++..|..++..
T Consensus         8 ~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l--------------~~en~~Lr~~i~~L~~El~~   68 (70)
T 1gd2_E            8 PSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSST--------------TLENDQLRQKVRQLEEELRI   68 (70)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHTTHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999888764              45666666666666665543

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=99.14  E-value=2.1e-10  Score=77.53  Aligned_cols=46  Identities=26%  Similarity=0.465  Sum_probs=36.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041765           32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVN   77 (163)
Q Consensus        32 Rk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~   77 (163)
                      |+.+++.+||.||+|||.||+++.++|+.++..|+.+|..|..++.
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~   47 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERAD   47 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778889999999999999999999999999998888877666554

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.81  E-value=3.4e-08  Score=70.84  Aligned_cols=62  Identities=21%  Similarity=0.335  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND  109 (163)
Q Consensus        30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~  109 (163)
                      |++...|..+|.+||++||.++++...+++.++..|+.||..                     |++++..|..++..|..
T Consensus        13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~---------------------Lr~~v~~L~~E~~~Lr~   71 (87)
T 1hjb_A           13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENER---------------------LQKKVEQLSRELSTLRN   71 (87)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Confidence            455666778999999999999999999999888776655554                     66666666666666666


Q ss_pred             HHH
Q 041765          110 ILN  112 (163)
Q Consensus       110 il~  112 (163)
                      +|.
T Consensus        72 ll~   74 (87)
T 1hjb_A           72 LFK   74 (87)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.75  E-value=5.8e-08  Score=68.32  Aligned_cols=48  Identities=21%  Similarity=0.244  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041765           30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVN   77 (163)
Q Consensus        30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~   77 (163)
                      |+....|..+|.+||+|||.++++...+++.++..|+.||..|..+|.
T Consensus        13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~   60 (78)
T 1gu4_A           13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE   60 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566678999999999999999999999999887777766555543

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.56  E-value=1.6e-09  Score=80.48  Aligned_cols=69  Identities=23%  Similarity=0.411  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL  107 (163)
Q Consensus        28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l  107 (163)
                      ...-|.+||.++||.+|+.||.||.+..++|+.++..|+.+.              +.|..||..|+.++..|+.++..|
T Consensus        33 ~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~--------------e~L~~En~~l~~E~~~lk~k~e~L   98 (107)
T 3a5t_A           33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEV--------------EKLASENASMKLELDALRSKYEAL   98 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTT--------------TTTTSTTSHHHHTTTSSSSCC---
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445688999999999999999999999999998877665544              345566666776666666666555


Q ss_pred             HHH
Q 041765          108 NDI  110 (163)
Q Consensus       108 ~~i  110 (163)
                      ..+
T Consensus        99 ~~~  101 (107)
T 3a5t_A           99 QNF  101 (107)
T ss_dssp             ---
T ss_pred             HHH
Confidence            543

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.22  E-value=1.3e-05  Score=57.75  Aligned_cols=65  Identities=18%  Similarity=0.249  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      ...-|.+||.++||..|+-||.||.....+||.++..|..+-..|              ..||..+..++..+..++..
T Consensus        23 v~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L--------------~~e~~~~~~e~d~~k~k~~~   87 (90)
T 2wt7_B           23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQL--------------KQEVSRLARERDAYKVKSEK   87 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence            567788899999999999999999999999998887776665443              44555555555555555543

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.00  E-value=0.0023  Score=39.86  Aligned_cols=39  Identities=26%  Similarity=0.429  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765           52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL   97 (163)
Q Consensus        52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql   97 (163)
                      |+|+.+||.++..|+..|.+|..++       ..|..||.-||+-+
T Consensus         2 KaYl~eLE~r~k~le~~naeLEerv-------stLq~EN~mLRqvl   40 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERL-------STLQNENQMLRHIL   40 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHh
Confidence            5799999999999988888776655       46778898888754

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=96.82  E-value=0.014  Score=41.06  Aligned_cols=55  Identities=24%  Similarity=0.321  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI  110 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i  110 (163)
                      .-|.-++..|+.+|..|..++..+......+..||..|+.+...++.||..|-.-
T Consensus        23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk   77 (81)
T 2jee_A           23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455577777777777777777777777779999999999999999998877544

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=96.74  E-value=0.00082  Score=48.34  Aligned_cols=32  Identities=28%  Similarity=0.335  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 041765           28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLI   59 (163)
Q Consensus        28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe   59 (163)
                      ....|..||..+||.+|++||.||....+.|+
T Consensus        58 l~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~   89 (92)
T 1skn_P           58 RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMS   89 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence            44567889999999999999999999888775

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=96.16  E-value=0.069  Score=40.59  Aligned_cols=62  Identities=15%  Similarity=0.162  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      +.+...+.|+.++..+..|...|+.++..+..++..+..++..|+.++.+|+.++..|..=+
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~  133 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL  133 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556788888888888888889988888888888888888888888888888888886544

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=96.12  E-value=0.028  Score=36.43  Aligned_cols=47  Identities=28%  Similarity=0.471  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT  101 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~  101 (163)
                      .+.|-.||+.|+.||..|+.++..-..++..|+.|-.-+++=+..|+
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq   51 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ   51 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence            57899999999999999999999999999999888887777665554

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.81  E-value=0.15  Score=35.88  Aligned_cols=59  Identities=12%  Similarity=0.117  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRA-------QLLELTQRLDSLNDILN  112 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lra-------ql~eL~~rl~~l~~il~  112 (163)
                      -++.|+.+|..+=....-|..++..|+++...|..+|..++.       +...|++......+-|.
T Consensus         7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~   72 (81)
T 2jee_A            7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888888888777777777777777777777777777444       55555555555444443

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=95.30  E-value=0.067  Score=35.43  Aligned_cols=40  Identities=18%  Similarity=0.302  Sum_probs=34.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           73 LTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN  112 (163)
Q Consensus        73 ~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~  112 (163)
                      ..++..+..++..|+.+|..|+.++..|+.++..|..+|.
T Consensus        22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~   61 (63)
T 1ci6_A           22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456677888889999999999999999999999998874

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=95.03  E-value=0.089  Score=34.33  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=32.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           74 TSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        74 ~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      ..+..|...+..++.+|..|+.++..|+..+..|..+|
T Consensus        22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35667788888999999999999999999999998876

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=94.98  E-value=0.11  Score=34.29  Aligned_cols=40  Identities=20%  Similarity=0.244  Sum_probs=35.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           74 TSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF  113 (163)
Q Consensus        74 ~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~  113 (163)
                      ..+..|..++..|..+|..|+.++..|+..+..|..+|..
T Consensus        23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~   62 (63)
T 2wt7_A           23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4467788888999999999999999999999999998853

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=94.76  E-value=0.094  Score=34.99  Aligned_cols=41  Identities=27%  Similarity=0.298  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041765           55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRA   95 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lra   95 (163)
                      +..-|++|.+|-+-|..|..++..++..+..|.+||..||.
T Consensus        22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            45567889999999999999999999999999999999984

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=94.53  E-value=0.26  Score=35.94  Aligned_cols=43  Identities=19%  Similarity=0.166  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILT-------SVNITTQHYMNIESENSVLRAQLL   98 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~-------~i~~l~~~~~~l~~EN~~Lraql~   98 (163)
                      -+|+..++.++.||..|+.       ++..|...+..|..||..|+.+-.
T Consensus        40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~   89 (104)
T 3s9g_A           40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE   89 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888888888888776       444444444444445544444433

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=94.53  E-value=0.062  Score=37.37  Aligned_cols=38  Identities=18%  Similarity=0.349  Sum_probs=30.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           74 TSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        74 ~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      .+...+...+..|+.||..|+.++..|..++..|..+|
T Consensus        36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll   73 (78)
T 1gu4_A           36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF   73 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455677788889999999999999999888888766

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=94.30  E-value=0.38  Score=34.95  Aligned_cols=63  Identities=16%  Similarity=0.227  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNI---------------------ESENSVLRAQLLELTQRLDSLNDILN  112 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l---------------------~~EN~~Lraql~eL~~rl~~l~~il~  112 (163)
                      .+..|..+|+.|+.||..|+.++..|.-++...                     .......+..+..|+..+..|...+.
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~   92 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR   92 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777777777777777777765554430                     11122345666666666666666666


Q ss_pred             HHhc
Q 041765          113 FINT  116 (163)
Q Consensus       113 ~~~~  116 (163)
                      .++.
T Consensus        93 ~lEe   96 (100)
T 1go4_E           93 AMER   96 (100)
T ss_dssp             TCC-
T ss_pred             HHhc
Confidence            6654

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=94.21  E-value=0.24  Score=30.88  Aligned_cols=45  Identities=20%  Similarity=0.194  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLL   98 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~   98 (163)
                      .+..|+.+|..|+.||..|..+.-.-..-+.-++.|...||..++
T Consensus         4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie   48 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE   48 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence            356889999999999999887765545555566666666665553

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=94.09  E-value=0.35  Score=31.79  Aligned_cols=36  Identities=25%  Similarity=0.312  Sum_probs=24.3

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           36 RMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQ   71 (163)
Q Consensus        36 R~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~   71 (163)
                      ...+||.++|++|.|=++.++....-...-..||..
T Consensus         5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~r   40 (63)
T 2c9l_Y            5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDR   40 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Confidence            347899999999999888776665443333333333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=93.74  E-value=0.94  Score=34.25  Aligned_cols=55  Identities=7%  Similarity=0.074  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           60 AQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI  114 (163)
Q Consensus        60 ~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~  114 (163)
                      .++..|+.+...+..++..+.+++..+..++..++.++.+|+.++..|..-+.-+
T Consensus        75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l  129 (138)
T 3hnw_A           75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555555555555555555666666666665555554444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.58  E-value=0.79  Score=40.36  Aligned_cols=51  Identities=18%  Similarity=0.149  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD  105 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~  105 (163)
                      +..++.+.+.+..+++.+..+++...+++..++.|...|+.++.+.++++.
T Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~  561 (597)
T 3oja_B          511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQA  561 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence            334444555555555566666655555566555555555554444444443

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=93.37  E-value=0.11  Score=34.09  Aligned_cols=40  Identities=15%  Similarity=0.203  Sum_probs=30.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           73 LTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN  112 (163)
Q Consensus        73 ~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~  112 (163)
                      ...+..|...+..|+.+|..|+.++..|...+..|..+|.
T Consensus        21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~   60 (62)
T 1jnm_A           21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM   60 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677888889999999999999999999988877663

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.21  E-value=1.3  Score=43.38  Aligned_cols=59  Identities=20%  Similarity=0.291  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           51 KQKHLDDLIAQVDQLRKENNQILTSVN----ITTQHYMNIESENSVLRAQLLELTQRLDSLND  109 (163)
Q Consensus        51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~----~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~  109 (163)
                      .++.+++|+.++..+.+|...|..++.    .+++++..|+.||..|++|+.+|...+...++
T Consensus       989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A          989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444433    23455566777777777777777755555543

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=92.16  E-value=0.3  Score=33.17  Aligned_cols=26  Identities=19%  Similarity=0.135  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNI   78 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~   78 (163)
                      ..+.+|+.....|..||..|...+..
T Consensus        36 ~~v~~le~~~~~l~~en~~Lr~~i~~   61 (70)
T 1gd2_E           36 TQVVTLKELHSSTTLENDQLRQKVRQ   61 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567777777778888777666543

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=92.13  E-value=0.84  Score=29.04  Aligned_cols=39  Identities=23%  Similarity=0.146  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765           59 IAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL   97 (163)
Q Consensus        59 e~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql   97 (163)
                      +.++..|+.-|..|..++..++..+..++.|+..|++=+
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL   41 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL   41 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            567888899999999999999888888888888776543

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.08  E-value=1.4  Score=31.83  Aligned_cols=50  Identities=14%  Similarity=0.197  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR  103 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r  103 (163)
                      .+..|+.++.....+...|...+..-.......+.++..+..++.+|+..
T Consensus        13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas   62 (97)
T 2eqb_B           13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS   62 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444555555444455555555555555555555543

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=92.05  E-value=1.3  Score=35.34  Aligned_cols=56  Identities=21%  Similarity=0.194  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF  113 (163)
Q Consensus        58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~  113 (163)
                      |+.++..|+..+..|...|..|.+....++.....+..-+..+..++...-+-..+
T Consensus        93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~al  148 (189)
T 2v71_A           93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAF  148 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333334444444444433333333

>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1

Probab=91.92  E-value=0.24  Score=28.22  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 041765           82 HYMNIESENSVLRAQLLELTQRL  104 (163)
Q Consensus        82 ~~~~l~~EN~~Lraql~eL~~rl  104 (163)
                      -+..+++||..|++++++|-.++
T Consensus         7 llasleaenkqlkakveellakv   29 (31)
T 1p9i_A            7 LLASLEAENKQLKAKVEELLAKV   29 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            35678888999999998886654

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=91.90  E-value=1  Score=31.37  Aligned_cols=44  Identities=16%  Similarity=0.364  Sum_probs=33.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           67 KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI  114 (163)
Q Consensus        67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~  114 (163)
                      .||..|+.+|..+...+..+..||..|+    +|...++.|-++|..+
T Consensus        34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~----el~~~~~~laevl~~l   77 (79)
T 2zxx_A           34 KENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERL   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTH----HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence            5788999999888888888888888774    5556666666666544

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=91.63  E-value=0.012  Score=42.25  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH
Q 041765           30 DQRKRKRMQSNRESARRSRMRKQK   53 (163)
Q Consensus        30 deRk~rR~lsNReSARRSR~RKq~   53 (163)
                      .-|..||.-+||++|+++|+||..
T Consensus        64 lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           64 LVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHH
Confidence            457788999999999999999853

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=91.49  E-value=1.8  Score=30.17  Aligned_cols=17  Identities=12%  Similarity=0.163  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 041765           58 LIAQVDQLRKENNQILT   74 (163)
Q Consensus        58 Le~qv~~L~~EN~~L~~   74 (163)
                      |..++..|+.|...|+-
T Consensus        25 Lq~Ql~~Lq~Ev~~LRG   41 (83)
T 2xdj_A           25 LQQQLSDNQSDIDSLRG   41 (83)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            33344433333333333

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=91.21  E-value=0.71  Score=30.27  Aligned_cols=39  Identities=21%  Similarity=0.130  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765           59 IAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL   97 (163)
Q Consensus        59 e~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql   97 (163)
                      +.++..|+..|-.|..+++.|+.++...+.|+..|.+=+
T Consensus        10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL   48 (58)
T 3a2a_A           10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL   48 (58)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888888999998888888888888887776543

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=91.05  E-value=1.3  Score=28.34  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhH
Q 041765           56 DDLIAQVDQLRKENNQILTSV   76 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i   76 (163)
                      .+|..++..|...|..|...+
T Consensus        12 ~~l~~~l~~L~~rN~rL~~~L   32 (51)
T 3m91_A           12 HQLEARIDSLAARNSKLMETL   32 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            345555555544444444333

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=90.76  E-value=0.85  Score=31.39  Aligned_cols=51  Identities=10%  Similarity=0.053  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN  108 (163)
Q Consensus        58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~  108 (163)
                      |+.++..|+..-..+...|..|...+..-..+...|+.++..|..++..+.
T Consensus        12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~   62 (78)
T 3efg_A           12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   62 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            444444444444444444555555555555555666666666666655544

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=90.71  E-value=1.9  Score=29.45  Aligned_cols=46  Identities=15%  Similarity=0.219  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT  101 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~  101 (163)
                      .++..++..++.+|..|..++..+++.+..-..+-..++.++..+.
T Consensus         3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~   48 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL   48 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788888889999999888888888877777777776665543

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=90.71  E-value=2.8  Score=29.02  Aligned_cols=61  Identities=11%  Similarity=0.232  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      =++.+..-.+++..|+.-.+.|..--..+...+..+..|-..|...+..|+.+...|.+++
T Consensus        16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l   76 (78)
T 3iv1_A           16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456667777777888777777777777777788888888888888888888887776543

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=90.53  E-value=2.6  Score=29.10  Aligned_cols=61  Identities=15%  Similarity=0.213  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           51 KQKHLDDLIAQVDQLRKENNQILTSVNIT------TQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l------~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      -|..++.|+.++..|+.+...|...+..-      -..+..+..+...+..++.++-.|...|..+-
T Consensus        20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~~   86 (89)
T 2lw1_A           20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALK   86 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            35568999999999999999998888642      24567788888888888888888887776543

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=90.48  E-value=0.35  Score=28.51  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHH
Q 041765           55 LDDLIAQVDQLRKENNQILTSVNI   78 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i~~   78 (163)
                      +..||.+|+.|-.+|..|..++..
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~R   25 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVAR   25 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHH
Confidence            456777777666666665554443

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=90.43  E-value=0.58  Score=27.71  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVN   77 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~   77 (163)
                      ++..||.+|..|-.+|..|..++.
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~   25 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVX   25 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHH
Confidence            456677777766666655544443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=89.91  E-value=2.2  Score=31.83  Aligned_cols=47  Identities=19%  Similarity=0.187  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRL  104 (163)
Q Consensus        58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl  104 (163)
                      |+.+..+-++..++|..+|..|.+++....+|-..||.+...|..|+
T Consensus        62 L~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~  108 (121)
T 3mq7_A           62 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI  108 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence            33333333334445555555555555555555555555555555444

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=89.85  E-value=0.48  Score=31.31  Aligned_cols=33  Identities=15%  Similarity=0.180  Sum_probs=25.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           73 LTSVNITTQHYMNIESENSVLRAQLLELTQRLD  105 (163)
Q Consensus        73 ~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~  105 (163)
                      ...+..|..++..|..+|..|+.++..|+..|.
T Consensus        29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345667778888889999999999998887664

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=89.69  E-value=4.4  Score=31.37  Aligned_cols=38  Identities=18%  Similarity=0.168  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765           60 AQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL   97 (163)
Q Consensus        60 ~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql   97 (163)
                      .-+..|+.|...|.-+++.+..+...++.||..|-.+.
T Consensus        96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW  133 (152)
T 3a7p_A           96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW  133 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555556666666666666666666666665554444

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=89.68  E-value=1.9  Score=34.58  Aligned_cols=58  Identities=17%  Similarity=0.227  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND  109 (163)
Q Consensus        52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~  109 (163)
                      +++++.-..-|..|..||..|..++.....++..|..+-..|++++..+..++..-.+
T Consensus        12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e   69 (190)
T 4emc_A           12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAE   69 (190)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            3445555556777788887777777776666777777666676666555544444433

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=89.65  E-value=0.48  Score=28.37  Aligned_cols=26  Identities=19%  Similarity=0.248  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVNIT   79 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~~l   79 (163)
                      ++..|+.+|..|-.+|..|..++..|
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL   27 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARL   27 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45677777777776666655554433

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=89.59  E-value=0.84  Score=27.32  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVNIT   79 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~~l   79 (163)
                      ++..|+.+|+.|-.+|..|..++..|
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RL   27 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARL   27 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHH
Confidence            46677777777766666655554433

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=89.51  E-value=1.2  Score=31.06  Aligned_cols=46  Identities=13%  Similarity=0.198  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT  101 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~  101 (163)
                      +++..++..++.+|..|..++..++..+..-..+-..++.++..+.
T Consensus         9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~   54 (79)
T 3cvf_A            9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA   54 (79)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778888888888888888888887777766666666665443

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=89.43  E-value=1.5  Score=31.80  Aligned_cols=30  Identities=17%  Similarity=0.215  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           80 TQHYMNIESENSVLRAQLLELTQRLDSLND  109 (163)
Q Consensus        80 ~~~~~~l~~EN~~Lraql~eL~~rl~~l~~  109 (163)
                      ...+.....+-..|++++..|+.++..|.+
T Consensus        67 ~~a~~~~~~~~e~Lq~E~erLr~~v~~lEe   96 (100)
T 1go4_E           67 SVARQRLREDHSQLQAECERLRGLLRAMER   96 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            444556667777888888888887776543

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=89.36  E-value=3.9  Score=29.27  Aligned_cols=78  Identities=15%  Similarity=0.211  Sum_probs=54.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           38 QSNRESARRSRMRKQKHLDDLIAQVDQLR---KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI  114 (163)
Q Consensus        38 lsNReSARRSR~RKq~~l~eLe~qv~~L~---~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~  114 (163)
                      ..|-.+|-..=..|+..+++|...+.+++   ..+..|..++.....-+..-.+.-..+-.+..+|..+|..|..-+..+
T Consensus         8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L   87 (94)
T 3jsv_C            8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL   87 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34556677777779999999999988888   455567777777777777666666666666666666666666555444


Q ss_pred             h
Q 041765          115 N  115 (163)
Q Consensus       115 ~  115 (163)
                      +
T Consensus        88 ~   88 (94)
T 3jsv_C           88 K   88 (94)
T ss_dssp             -
T ss_pred             H
Confidence            4

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=89.03  E-value=0.96  Score=29.02  Aligned_cols=13  Identities=23%  Similarity=0.383  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHH
Q 041765           61 QVDQLRKENNQIL   73 (163)
Q Consensus        61 qv~~L~~EN~~L~   73 (163)
                      .|..|+.||..|+
T Consensus        20 d~eaLk~E~~eLk   32 (53)
T 2yy0_A           20 EIELLRLELAEMK   32 (53)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            3444444444433

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=88.93  E-value=4.5  Score=28.35  Aligned_cols=45  Identities=16%  Similarity=0.363  Sum_probs=33.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           67 KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      .||.+|...+..+...+..+..+|..|+    +|...++.|-++|..+.
T Consensus        38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~----elA~~~q~la~~i~~L~   82 (83)
T 1wlq_A           38 KENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERLS   82 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence            5788888888888888888888887765    46667777777776553

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=88.35  E-value=0.89  Score=27.29  Aligned_cols=28  Identities=21%  Similarity=0.353  Sum_probs=24.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 041765           67 KENNQILTSVNITTQHYMNIESENSVLR   94 (163)
Q Consensus        67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lr   94 (163)
                      .||.+|...|..-.+++..|..||..|.
T Consensus         7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~   34 (37)
T 1t6f_A            7 KENEKLHKEIEQKDNEIARLKKENKELA   34 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            5899999999988888999999988875

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=88.13  E-value=3.5  Score=30.77  Aligned_cols=34  Identities=15%  Similarity=0.255  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           81 QHYMNIESENSVLRAQLLELTQRLDSLNDILNFI  114 (163)
Q Consensus        81 ~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~  114 (163)
                      .++..|+.|+..|..++.+...++..|..-...+
T Consensus        71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~  104 (121)
T 3mq7_A           71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVL  104 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence            3456666666666666666666666665554433

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=87.92  E-value=2.8  Score=26.73  Aligned_cols=39  Identities=10%  Similarity=0.112  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           60 AQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLL   98 (163)
Q Consensus        60 ~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~   98 (163)
                      .++..|+.++..|..++..|..-+.....+...|++++.
T Consensus         9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele   47 (51)
T 3m91_A            9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD   47 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555544444444433333333333333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=87.89  E-value=4.7  Score=27.32  Aligned_cols=52  Identities=12%  Similarity=0.132  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRL  104 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl  104 (163)
                      ..++.++.++...+.....+...+..++.++..++.+-.....++.....+|
T Consensus        20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL   71 (81)
T 1ic2_A           20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL   71 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555545555555555554444444444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.70  E-value=6  Score=34.70  Aligned_cols=58  Identities=16%  Similarity=0.135  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF  113 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~  113 (163)
                      +.++..+..++...+.+..++....+.......+-..|+.++.++..++....+.+..
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~  562 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAE  562 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHH
Confidence            3344444444444444444444444444444455555555555555555555554443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=87.66  E-value=9.8  Score=37.19  Aligned_cols=27  Identities=26%  Similarity=0.251  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQH   82 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~   82 (163)
                      ..|+.+++.|+.+...+..+...+++.
T Consensus       987 ~~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A          987 LSLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=87.64  E-value=1.2  Score=26.31  Aligned_cols=24  Identities=0%  Similarity=0.071  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVN   77 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~   77 (163)
                      ++..||.+|+.|-.+|..|..++.
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~   25 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXA   25 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHH
Confidence            456677776666555555444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=87.48  E-value=5.1  Score=39.17  Aligned_cols=26  Identities=15%  Similarity=0.332  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           81 QHYMNIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        81 ~~~~~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      .++..+..+...|..++.++..++..
T Consensus       913 ~~l~~l~~~~~~Le~~l~ele~elee  938 (1184)
T 1i84_S          913 EMRVRLAAKKQELEEILHEMEARIEE  938 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444443333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=87.19  E-value=9.3  Score=29.94  Aligned_cols=30  Identities=20%  Similarity=0.300  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           83 YMNIESENSVLRAQLLELTQRLDSLNDILN  112 (163)
Q Consensus        83 ~~~l~~EN~~Lraql~eL~~rl~~l~~il~  112 (163)
                      +..|..|...++.....+......|.+-|.
T Consensus        99 i~~L~~El~~~k~~~~k~~~e~r~L~Ekl~  128 (168)
T 3o0z_A           99 ITSLQEEVKHLKHNLEKVEGERKEAQDMLN  128 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=87.19  E-value=2.9  Score=25.81  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           77 NITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        77 ~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      ..|..+...++.-|..|..++..|+.+-+.|..|+
T Consensus         6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A            6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            34445555566666666666666666666666555

>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}

Probab=87.12  E-value=4.6  Score=32.69  Aligned_cols=45  Identities=16%  Similarity=0.372  Sum_probs=32.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           67 KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      .||..|+.+|..+.+.+..+..||..|+.    |...++.|-++|..+.
T Consensus       115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLke----Lae~~q~la~vi~~l~  159 (209)
T 2wvr_A          115 KENEKLHKEIEQKDNEIARLKKENKELAE----VAEHVQYMAELIERLN  159 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence            58888888888888888888888777664    4455666666666654

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=86.95  E-value=0.7  Score=29.71  Aligned_cols=31  Identities=19%  Similarity=0.187  Sum_probs=24.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           74 TSVNITTQHYMNIESENSVLRAQLLELTQRL  104 (163)
Q Consensus        74 ~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl  104 (163)
                      ..+..|..++..|+.||..|+.++..|+..+
T Consensus        22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A           22 EYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3466677778889999999999998887643

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=86.11  E-value=6.8  Score=27.32  Aligned_cols=58  Identities=12%  Similarity=0.236  Sum_probs=36.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           40 NRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL  100 (163)
Q Consensus        40 NReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL  100 (163)
                      |-.||=.+=.+-|+   .+..++...+..|..+.+++.....+...|..|-..|+.++.+|
T Consensus        14 eLQSALeaEIqAKQ---~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel   71 (81)
T 1wt6_A           14 ELQEALEEEVLTRQ---SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL   71 (81)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566655555554   45556677777888877777766666666655555555555554

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=85.63  E-value=1.8  Score=25.40  Aligned_cols=22  Identities=0%  Similarity=0.169  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhH
Q 041765           55 LDDLIAQVDQLRKENNQILTSV   76 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i   76 (163)
                      +..||.+|+.|-.+|..|..++
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV   23 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXL   23 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHH
Confidence            4556666666555555544443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=85.35  E-value=7.9  Score=27.39  Aligned_cols=54  Identities=9%  Similarity=0.075  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRL  104 (163)
Q Consensus        51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl  104 (163)
                      -..+.+.++.++..++..+.++-..+..|+.++..++.+-..+..++.+....|
T Consensus        21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL   74 (101)
T 3u1c_A           21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL   74 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666666666666666666666666666666555555555544433

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=85.34  E-value=9.1  Score=28.09  Aligned_cols=71  Identities=15%  Similarity=0.193  Sum_probs=42.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           39 SNRESARRSRMRKQKHLDDLIAQVDQLRK---ENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND  109 (163)
Q Consensus        39 sNReSARRSR~RKq~~l~eLe~qv~~L~~---EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~  109 (163)
                      .|=.+|-..=..|+..+++|..++.+++.   ...-|..++......+..-.+.-..+-.+..+|..+|..|..
T Consensus        31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~  104 (110)
T 2v4h_A           31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR  104 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence            34455666666688888888888887776   455566666666555555444444444455555554444443

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=85.23  E-value=2.1  Score=25.30  Aligned_cols=30  Identities=10%  Similarity=0.125  Sum_probs=22.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           75 SVNITTQHYMNIESENSVLRAQLLELTQRL  104 (163)
Q Consensus        75 ~i~~l~~~~~~l~~EN~~Lraql~eL~~rl  104 (163)
                      +.+.|..+++.|..+|..|..++..|+.-|
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll   31 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLV   31 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            345667777888888888888888776544

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=85.14  E-value=2.1  Score=27.37  Aligned_cols=31  Identities=10%  Similarity=0.094  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           81 QHYMNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        81 ~~~~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      ..+..|..||..|++++.+|..++..+..-|
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l   49 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666666666665543

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=85.03  E-value=2  Score=25.20  Aligned_cols=25  Identities=4%  Similarity=0.093  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHH
Q 041765           55 LDDLIAQVDQLRKENNQILTSVNIT   79 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i~~l   79 (163)
                      +..||.+|+.|-.+|..|..++..+
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl   26 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARN   26 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHH
Confidence            5567777777766666655554433

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=85.03  E-value=1.6  Score=25.79  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVNI   78 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~~   78 (163)
                      ++..|+.+|+.|-.+|..|..++..
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~R   26 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVAR   26 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHH
Confidence            4566777777766666665544433

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=84.94  E-value=8  Score=27.11  Aligned_cols=46  Identities=26%  Similarity=0.237  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 041765           59 IAQVDQLRKENNQILTSVNITTQHYM-----NIESENSVLRAQLLELTQRL  104 (163)
Q Consensus        59 e~qv~~L~~EN~~L~~~i~~l~~~~~-----~l~~EN~~Lraql~eL~~rl  104 (163)
                      -.+|..|+.+|..|..++..+..+..     ..+.+-..||.++..+...-
T Consensus        22 IdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek   72 (93)
T 3s4r_A           22 IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDK   72 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666666555443321     13444455555554444333

>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=84.34  E-value=2  Score=23.91  Aligned_cols=23  Identities=35%  Similarity=0.534  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 041765           85 NIESENSVLRAQLLELTQRLDSL  107 (163)
Q Consensus        85 ~l~~EN~~Lraql~eL~~rl~~l  107 (163)
                      .|+-||..|.+.+..|.+++.+|
T Consensus         4 alefendaleqkiaalkqkiasl   26 (28)
T 3ra3_A            4 ALEFENDALEQKIAALKQKIASL   26 (28)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhccHHHHHHHHHHHHHHHHh
Confidence            35556666666666666666655

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=84.23  E-value=3.7  Score=28.14  Aligned_cols=52  Identities=12%  Similarity=0.066  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      .|+..-..|..++.....-+..|...-..-..++..|+.+|..|.+-+..+.
T Consensus        11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~   62 (78)
T 3efg_A           11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   62 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444444444555444444444444444445555555555555555544444

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=84.08  E-value=0.65  Score=32.15  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=11.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHH
Q 041765           72 ILTSVNITTQHYMNIESENSVLRA   95 (163)
Q Consensus        72 L~~~i~~l~~~~~~l~~EN~~Lra   95 (163)
                      |+.+|..|..+...|+.||..||.
T Consensus        20 LKe~I~EL~e~~~qLE~EN~~Lk~   43 (78)
T 1dip_A           20 LKEQIRELVEKNSQLERENTLLKT   43 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444445555555553

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=83.99  E-value=7.8  Score=26.20  Aligned_cols=22  Identities=9%  Similarity=0.139  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 041765           85 NIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        85 ~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      .|..-+..|..++.....+|..
T Consensus        45 ~L~kKiq~lE~eld~~ee~l~~   66 (81)
T 1ic2_A           45 ALQKKLKGTEDELDKYSESLKD   66 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=83.97  E-value=1.6  Score=25.83  Aligned_cols=24  Identities=4%  Similarity=0.303  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVN   77 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~   77 (163)
                      ++..||.+|+.|-.+|..|..++.
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~   25 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELA   25 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHH
Confidence            455667776666555555444443

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=83.95  E-value=1.3  Score=26.01  Aligned_cols=28  Identities=14%  Similarity=0.101  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           77 NITTQHYMNIESENSVLRAQLLELTQRL  104 (163)
Q Consensus        77 ~~l~~~~~~l~~EN~~Lraql~eL~~rl  104 (163)
                      +.|..+++.|..+|..|..++..|+.-|
T Consensus         3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll   30 (33)
T 3m48_A            3 AQLEAKVEELLSKNWNLENEVARLKKLV   30 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            4566777888888888888888776543

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=83.82  E-value=8.6  Score=27.87  Aligned_cols=27  Identities=33%  Similarity=0.513  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765           52 QKHLDDLIAQVDQLRKENNQILTSVNI   78 (163)
Q Consensus        52 q~~l~eLe~qv~~L~~EN~~L~~~i~~   78 (163)
                      -..+.+|+.+|..|+.||+.|+.+...
T Consensus        64 ~~~v~eLe~everL~~ENq~L~~e~~~   90 (104)
T 3s9g_A           64 DARVRELELELDRLRAENLQLLTENEL   90 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467889999999999999887766543

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=83.63  E-value=2.4  Score=24.36  Aligned_cols=25  Identities=28%  Similarity=0.247  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHH
Q 041765           55 LDDLIAQVDQLRKENNQILTSVNIT   79 (163)
Q Consensus        55 l~eLe~qv~~L~~EN~~L~~~i~~l   79 (163)
                      +..|+++|.+.+.||-+|..++..+
T Consensus         3 vaqlekevaqaeaenyqleqevaql   27 (33)
T 1fmh_A            3 VAQLEKEVAQAEAENYQLEQEVAQL   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3456666666666665555544433

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=83.60  E-value=1.8  Score=36.02  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765           82 HYMNIESENSVLRAQLLELTQRLDSLNDILNFINT  116 (163)
Q Consensus        82 ~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~  116 (163)
                      ++..+...|..|++.+.+++.++..|.+-++.+.+
T Consensus        62 ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s   96 (251)
T 3m9b_A           62 RIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ   96 (251)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33344444555555555555555555555555544

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=83.55  E-value=1.7  Score=25.71  Aligned_cols=25  Identities=4%  Similarity=0.094  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVNI   78 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~~   78 (163)
                      ++..||.+|+.|-.+|..|..++..
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~R   26 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELAR   26 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHH
Confidence            3456777777666666665544433

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=83.27  E-value=11  Score=27.53  Aligned_cols=49  Identities=14%  Similarity=0.154  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           57 DLIAQVDQLRKENNQILTSVNITTQ-----------HYMNIESENSVLRAQLLELTQRLD  105 (163)
Q Consensus        57 eLe~qv~~L~~EN~~L~~~i~~l~~-----------~~~~l~~EN~~Lraql~eL~~rl~  105 (163)
                      .|+.++..++..+..|...+..+..           .+..++.+...+|+++...-...+
T Consensus        49 ~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq  108 (131)
T 3tnu_A           49 NLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK  108 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444333           333455555555555544433333

>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1

Probab=82.69  E-value=3.8  Score=28.73  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=19.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765           67 KENNQILTSVNITTQHYMNIESENSVLRAQL   97 (163)
Q Consensus        67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql   97 (163)
                      .||..|...|..+.+.+..+..+|..|+.=+
T Consensus        46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela   76 (83)
T 1uii_A           46 KENEKLHKEIEQKDNEIARLKKENKELAEVA   76 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4777787777766666666666666555433

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=82.68  E-value=15  Score=28.39  Aligned_cols=45  Identities=13%  Similarity=0.083  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL  100 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL  100 (163)
                      .+|+..+..-.+.+..|..++..+.-++..++.....|.++-..|
T Consensus        85 ~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L  129 (152)
T 3a7p_A           85 RRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL  129 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=82.36  E-value=12  Score=27.15  Aligned_cols=13  Identities=31%  Similarity=0.532  Sum_probs=9.2

Q ss_pred             hHHHHHHHHHHHh
Q 041765           28 AMDQRKRKRMQSN   40 (163)
Q Consensus        28 ~~deRk~rR~lsN   40 (163)
                      ..++|-+|=|++|
T Consensus         6 EvEEKyrKAMVsn   18 (103)
T 4h22_A            6 EVEEKYKKAMVSN   18 (103)
T ss_dssp             --CCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4567888889887

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=82.13  E-value=12  Score=27.10  Aligned_cols=17  Identities=6%  Similarity=0.048  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 041765           93 LRAQLLELTQRLDSLND  109 (163)
Q Consensus        93 Lraql~eL~~rl~~l~~  109 (163)
                      ++-.+..|+..+..|..
T Consensus        63 ~Kr~~~~L~~~~~~lk~   79 (103)
T 4h22_A           63 EKHAHSILQFQFAEVKE   79 (103)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=81.99  E-value=24  Score=30.28  Aligned_cols=41  Identities=10%  Similarity=0.071  Sum_probs=16.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           67 KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL  107 (163)
Q Consensus        67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l  107 (163)
                      .+......+++.+.++...++.+...+..++.+..++++.+
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (487)
T 3oja_A          435 RDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL  475 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence            33333333333333333334444444444444444444433

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=81.89  E-value=13  Score=27.13  Aligned_cols=50  Identities=14%  Similarity=0.271  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVNITTQ-----------HYMNIESENSVLRAQLLELTQRLD  105 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~~l~~-----------~~~~l~~EN~~Lraql~eL~~rl~  105 (163)
                      ..|+.++..++..+..|...+..+..           .+..++.+...+|+++...-...+
T Consensus        46 q~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq  106 (129)
T 3tnu_B           46 QRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQ  106 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            34444555555555555544444433           334455555555555554433333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=81.86  E-value=18  Score=28.75  Aligned_cols=52  Identities=19%  Similarity=0.149  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           61 QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN  112 (163)
Q Consensus        61 qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~  112 (163)
                      .+..|+.+...|......+..++..|+..|..|.........-+..+..-++
T Consensus        89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln  140 (189)
T 2v71_A           89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN  140 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence            3555555555555555555666666666666555555555444444444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=81.54  E-value=16  Score=29.34  Aligned_cols=32  Identities=9%  Similarity=0.019  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041765           49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITT   80 (163)
Q Consensus        49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~   80 (163)
                      ...+..+++++.++..++.+-..+..++...+
T Consensus        49 ~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~   80 (256)
T 3na7_A           49 LNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ   80 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444433

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=81.47  E-value=8.1  Score=26.43  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           76 VNITTQHYMNIESENSVLRAQLLELTQ  102 (163)
Q Consensus        76 i~~l~~~~~~l~~EN~~Lraql~eL~~  102 (163)
                      ...|.-.+..+.-||..|..++..|++
T Consensus        48 ~ErLNDEiislNIENNlL~~rl~~l~~   74 (75)
T 3a7o_A           48 TERLNDELISGTIENNVLQQKLSDLKK   74 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence            334455566778889998888877764

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=81.11  E-value=7  Score=33.94  Aligned_cols=22  Identities=9%  Similarity=0.241  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHH
Q 041765           56 DDLIAQVDQLRKENNQILTSVN   77 (163)
Q Consensus        56 ~eLe~qv~~L~~EN~~L~~~i~   77 (163)
                      +.|+.++..|+.+..+|...+.
T Consensus         6 ~~~~~~~~~l~~~~~~l~~~~~   27 (403)
T 4etp_A            6 AALKEKIAALKEKIAALKEKIK   27 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444443

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=81.08  E-value=2.5  Score=28.69  Aligned_cols=28  Identities=11%  Similarity=0.172  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           84 MNIESENSVLRAQLLELTQRLDSLNDIL  111 (163)
Q Consensus        84 ~~l~~EN~~Lraql~eL~~rl~~l~~il  111 (163)
                      ..|..++..|..++.+|..+...|..-|
T Consensus        50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l   77 (83)
T 1nkp_B           50 QYMRRKNHTHQQDIDDLKRQNALLEQQV   77 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444333

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=80.78  E-value=4.6  Score=24.07  Aligned_cols=31  Identities=13%  Similarity=0.136  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           76 VNITTQHYMNIESENSVLRAQLLELTQRLDS  106 (163)
Q Consensus        76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~  106 (163)
                      ++.|..+.+.|..+|..|..++..|+.-+..
T Consensus         3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~   33 (36)
T 1kd8_B            3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAE   33 (36)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            4455666677777777787777777665543

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=80.73  E-value=5.1  Score=25.76  Aligned_cols=33  Identities=24%  Similarity=0.293  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           76 VNITTQHYMNIESENSVLRAQLLELTQRLDSLN  108 (163)
Q Consensus        76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~  108 (163)
                      .+.|-++.+.|..||..||.++..-...|..|+
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE   37 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLE   37 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence            345667778888899999888776665555544

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=80.70  E-value=12  Score=25.90  Aligned_cols=53  Identities=17%  Similarity=0.193  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD  105 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~  105 (163)
                      ....+|+.+...|..+...|..++..+...+..|......|..++.+|..||.
T Consensus        35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~   87 (89)
T 3bas_A           35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34457788888888888888777888888888888888888888888888763

>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B

Probab=80.62  E-value=2.9  Score=24.73  Aligned_cols=22  Identities=18%  Similarity=0.295  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 041765           78 ITTQHYMNIESENSVLRAQLLE   99 (163)
Q Consensus        78 ~l~~~~~~l~~EN~~Lraql~e   99 (163)
                      ..++.+..+..+|..|.+|+..
T Consensus        11 a~qqDIddlkrQN~~Le~Qir~   32 (34)
T 1a93_B           11 THQQDIDDLKRQNALLEQQVRA   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHhhHHHHHHHHHHHHHHHHh
Confidence            3333444455555556655543

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=80.45  E-value=5  Score=27.40  Aligned_cols=7  Identities=29%  Similarity=0.572  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 041765           55 LDDLIAQ   61 (163)
Q Consensus        55 l~eLe~q   61 (163)
                      +++|+.+
T Consensus        42 I~eLEk~   48 (72)
T 3nmd_A           42 IDELELE   48 (72)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=80.41  E-value=4.2  Score=23.97  Aligned_cols=29  Identities=10%  Similarity=-0.035  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           76 VNITTQHYMNIESENSVLRAQLLELTQRL  104 (163)
Q Consensus        76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl  104 (163)
                      .+.+..+++.|..+|..|..++..|+.-|
T Consensus         3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll   31 (34)
T 3c3f_A            3 MXQIEXKLEXILSXLYHXENEXARIXKLL   31 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            45566777788888888888888776544

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=80.39  E-value=7.1  Score=33.91  Aligned_cols=35  Identities=9%  Similarity=0.157  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041765           53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIE   87 (163)
Q Consensus        53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~   87 (163)
                      ..+..|+.++..|+.+...+..++..+.+++...+
T Consensus        10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   44 (403)
T 4etp_A           10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEE   44 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444433333

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=80.33  E-value=4.3  Score=23.79  Aligned_cols=29  Identities=14%  Similarity=0.129  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           76 VNITTQHYMNIESENSVLRAQLLELTQRL  104 (163)
Q Consensus        76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl  104 (163)
                      .+.+..+++.|..+|..|..++..|+.-|
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL   30 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKXLL   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34566677788888888888888776544

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=80.20  E-value=14  Score=33.15  Aligned_cols=56  Identities=20%  Similarity=0.314  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           58 LIAQVDQLRKENNQILTSVNITTQ-----------HYMNIESENSVLRAQLLELTQRLDSLNDILNF  113 (163)
Q Consensus        58 Le~qv~~L~~EN~~L~~~i~~l~~-----------~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~  113 (163)
                      +..++..|+++.+.+.++|..+..           ....+..+-..|+.++.+|..++..+.+-+..
T Consensus        82 ~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~  148 (501)
T 1wle_A           82 LREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL  148 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555554432           23345555566666666666666665555543

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=80.12  E-value=5.7  Score=31.77  Aligned_cols=62  Identities=10%  Similarity=0.201  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765           54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN  115 (163)
Q Consensus        54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~  115 (163)
                      -+..|..++..|..++.....++..|++++..++..-..+..++..-..-+.-..+++..+.
T Consensus        21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LT   82 (190)
T 4emc_A           21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLC   82 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHcc
Confidence            45566677777777666666667777777777766666666666655555655666666553

>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A

Probab=80.02  E-value=1.7  Score=27.98  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           80 TQHYMNIESENSVLRAQLLELTQR  103 (163)
Q Consensus        80 ~~~~~~l~~EN~~Lraql~eL~~r  103 (163)
                      ...+..+..||..|+.++..|..+
T Consensus        33 ~~~~~~l~~e~~~L~~~~~~l~~~   56 (57)
T 2wuj_A           33 RKDYEIVLRKKTELEAKVNELDER   56 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344555666666666666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	94.25
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	82.26

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.25  E-value=0.0099  Score=39.49  Aligned_cols=27  Identities=33%  Similarity=0.453  Sum_probs=22.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 041765           31 QRKRKRMQSNRESARRSRMRKQKHLDD   57 (163)
Q Consensus        31 eRk~rR~lsNReSARRSR~RKq~~l~e   57 (163)
                      -|..||.=+|+.+|+.+|+||-...++
T Consensus        47 irDIRRRGKNKvAAqnCRKRKld~~d~   73 (74)
T d1sknp_          47 IRKIRRRGKNKVAARTCRQRRTDRHDK   73 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhcccHHHHHHHHHhhhhhhcc
Confidence            356778899999999999999876554

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=82.26  E-value=4.1  Score=27.04  Aligned_cols=30  Identities=13%  Similarity=0.159  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765           85 NIESENSVLRAQLLELTQRLDSLNDILNFI  114 (163)
Q Consensus        85 ~l~~EN~~Lraql~eL~~rl~~l~~il~~~  114 (163)
                      .+..+-..|+.++.+|...+..+..-+..+
T Consensus        68 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~   97 (110)
T d1seta1          68 ALIARGKALGEEAKRLEEALREKEARLEAL   97 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555544443