Citrus Sinensis ID: 041774

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
Protein Sequence
MPINRRSRRNMKRSATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWLFSCHSISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVECSSSFYKKPEDERLDCPQSFDWILEENPETIVWIQPPLKRGDTGIQISNCRDELLNDCE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHccccccccEEEEccccHHHHHccccccccccccccccccccccccccccccEEEEcccccccccEEEEEccccEEEEcccccccccEEEEEcccccccEEEccccccEEEcccccccccccEEEcccccccccEEEEEEEEEcccEEEEEEEcccccccEEEEEcccccccEEEEEEccEEEEEEcccEEEEEEcccccEEEEccccccccccEEEEEEEEEccccEEEEEEEEccccEEEEEEEEcccccEEEcccccccEEEEcccccEEEEccccccccccEEEEccccccccccccccccccccccccccccccccEEEcccccccccccEEccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHccccccccHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccEEEEccccEEEEccccccEEEEcccccccccEEEEccccEEEEEEcccccccccccccccccccEEEEcccccccccccccccccccEEEEEcccccccEEEEEEEccccccEEEEEEEccccccEEEEcccccccccccEEEEccEEEEEEcccEEEEEEccccccccccccccccccccccccEEEEEEccEEEEEEEEccccEEEEEEEccccccEEEEEcccccEEEEEcccEEEEcccccccccccEEEEEccccEEEccccccccccccccccccccccccEEEcccccccccccccccccHHHHcccc
Coil and Loop (DISEMBL)
mpinrrsrrnmkrsatkswsnlppdIVNLIAENLYYYADYADQVRFRTICKswqstcvplkeinlqpwlfschsishlfDTTHKLkytiktdprvlhskikaskdgwvlfskaninpspflfisynsspsslffynpfsasiielpplhmfssdkatfstaptslFCTVFVLSVYYSTRRIcistckpgertwtrhffdgfygdlhglTYLRGVLYCSFCNNVLgafrvstnswkiyphnrirptsVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWvevnrlddralflnpsstsmKLAVDDASELANTIHVecsssfykkpederldcpqsfdwileenpetivwiqpplkrgdtgiqisncrdellndce
Flexible Loop (DISEMBL)
mpinrrsrrnmkrsatkswsnlppdIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWLFSCHSISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICIstckpgertwtrHFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVstnswkiyphnrirPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVEcsssfykkpederLDCPQSFDWILEENPETivwiqpplkrgdtgiQISNCRDELLNDCE
Low Complexity Region (SEG)
MPINRRSRRNMKRSATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWLFSCHSISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVECSSSFYKKPEDERLDCPQSFDWILEENPETIVWIQPPLKRGDTGIQISNCRDELLNDCE
Disordered region (IsUnstruct)
*********************LPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWLFSCHSISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNP******LAVDDASELANTIHVECSSSFYK****ERLDCPQSFDWILEENPETIVWIQPPLKRGDTGIQISNC*********
Disordered Region (DISOPRED)
**********************PPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWLFSCHSISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVECSSSFYKKPEDERLDCPQSFDWILEENPETIVWIQPPLKRGDTGIQISNCRDELLND**
Disordered Region (DISEMBL)
*****************SWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWLFSCHSISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVECSSSFYKKPEDERLDCPQSFDWILEENPETIVWIQPPLKRGDTGIQISNCRDELLNDCE
Disordered Region (DISPRO)
*****************SWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWLFSCHSISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVECSSSFYKKPEDERLDCPQSFDWILEENPETIVWIQPPLKRGDTGIQISNCRDELLNDC*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPINRRSRRNMKRSATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWLFSCHSISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVECSSSFYKKPEDERLDCPQSFDWILEENPETIVWIQPPLKRGDTGIQISNCRDELLNDCE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	382	2.2.26 [Sep-21-2011]
Q9LXZ3	367	F-box protein At3g56470 O	yes	no	0.837	0.871	0.270	6e-24
Q9FVS1	352	F-box/kelch-repeat protei	no	no	0.861	0.934	0.25	2e-22
Q9XIA2	481	F-box protein At1g49360 O	no	no	0.683	0.542	0.286	2e-19
Q9LSA5	380	F-box/kelch-repeat protei	no	no	0.667	0.671	0.280	4e-18
Q1G391	388	F-box protein At4g00893 O	no	no	0.858	0.845	0.235	2e-17
Q1G3I7	138	F-box protein At4g12382 O	no	no	0.306	0.847	0.270	2e-06

>sp|Q9LXZ3|FB204_ARATH F-box protein At3g56470 OS=Arabidopsis thaliana GN=At3g56470 PE=2 SV=1

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 151/362 (41%), Gaps = 42/362 (11%)

Query: 17  KSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWL--FSCHS 74
           +++ NLP D++ L+   L       D +R   +CK+W   CV L+ I+  PWL  FS   
Sbjct: 27  QTFINLPCDLLQLVISRL----PLKDNIRASAVCKTWHEACVSLRVIHTSPWLIYFSKTD 82

Query: 75  ISH-LFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLF 133
            S+ L+D + +    +   P +   ++  SKDGW+L               YN +   L 
Sbjct: 83  DSYELYDPSMQKNCNLHF-PELSGFRVCYSKDGWLLM--------------YNPNSYQLL 127

Query: 134 FYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVF-VLSVYYSTRRICISTCKPGERT 192
           F+NPF+   + +P L M    +  FS APTS  C +F V SV ++   I I T     + 
Sbjct: 128 FFNPFTRDCVPMPTLWMAYDQRMAFSCAPTSTSCLLFTVTSVTWN--YITIKTYFANAKE 185

Query: 193 WTRHFFDGF----YGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHNRIRPTSVY 248
           W    F       +     + +  GV YC      L  F  S N W + P    RP    
Sbjct: 186 WKTSVFKNRLQRNFNTFEQIVFSNGVFYCLTNTGCLALFDPSLNYWNVLPG---RPPKRP 242

Query: 249 LYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPSSTSMKL 308
              G   +EH+G +  +Y   H +   V + DL    W E   L    ++ +  S+  + 
Sbjct: 243 GSNGCFMTEHQGEIFLIYMYRH-MNPTVLKLDLTSFEWAERKTLGGLTIYASALSSESRA 301

Query: 309 AVDDASELANTIHVECSSSF-----YKKPEDERLDCPQSFDWILEENPETIVWIQPPLKR 363
                S + N + +     F     Y K ++E   C   F W  ++NP   +WI PPL  
Sbjct: 302 EQQKQSGIWNCLCLSVFHGFKRTCIYYKVDEESEVC---FKW-KKQNPYENIWIMPPLNL 357

Query: 364 GD 365
            D
Sbjct: 358 ID 359

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVS1|FBK23_ARATH F-box/kelch-repeat protein At1g57790 OS=Arabidopsis thaliana GN=At1g57790 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 157/364 (43%), Gaps = 35/364 (9%)

Query: 10  NMKRSATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWL 69
           N    +   W +LP ++++ +      + +  D VR   +CKSW    V ++ I+  PWL
Sbjct: 4   NTNEGSKNLWKDLPLELLSSVMT----FLEIKDNVRASVVCKSWFEAAVSVRVIDKSPWL 59

Query: 70  F---SCHSISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYN 126
                  +    +D ++  KYT++    ++   ++ SKDGW+L S+ +            
Sbjct: 60  MYFPETKNTYDFYDPSNCKKYTMELPKSLVGFIVRYSKDGWLLMSQED------------ 107

Query: 127 SSPSSLFFYNPFSASIIELPPLHMFSSDK-ATFSTAPTSLFCTVFVLSVYYSTRRICIST 185
              S    +NPF+  ++ LP LH+F+  +   FS+APTS  C VF +   Y    + I T
Sbjct: 108 --SSHFVLFNPFTMDVVALPFLHLFTYYQLVGFSSAPTSSECVVFTIKD-YDPGHVTIRT 164

Query: 186 CKPGERTWTRHFFDGFYGDL--HGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHNRIR 243
             PG+  WT    +  + D+  + + +  GV YC    N +  F  S  +W +      R
Sbjct: 165 WSPGQTMWTSMQVESQFLDVDHNNVVFSNGVFYCLNQRNHVAVFDPSLRTWNVLDVPPPR 224

Query: 244 -PTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPS 302
            P       G     ++G +L +    ++   LVF+ DL +  W E + L    +F++  
Sbjct: 225 CPDDKSWNEGKFMVGYKGDILVIRTYENKDP-LVFKLDLTRGIWEEKDTLGSLTIFVSRK 283

Query: 303 STSMKLAVDDASELANTIHV------ECSSSFYKKPEDERLDCPQSFDWILEENPETIVW 356
           S   +  V D   L N+++       E  S  Y   E          DW  + + + I W
Sbjct: 284 SCESRTYVKDGM-LRNSVYFPELCYNEKQSVVYSFDEGRYHLREHDLDWGKQLSSDNI-W 341

Query: 357 IQPP 360
           I+PP
Sbjct: 342 IEPP 345

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIA2|FB49_ARATH F-box protein At1g49360 OS=Arabidopsis thaliana GN=At1g49360 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 135/300 (45%), Gaps = 39/300 (13%)

Query: 22  LPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWL-----FSCHSIS 76
           LP D+V LI   L     + D +R  T+CK+W      ++  + + WL     F    +S
Sbjct: 111 LPSDLVRLILSRL----SFKDNIRSSTVCKAWGDIAASVRVKSRRCWLLYHDAFQDKGVS 166

Query: 77  H-LFDTTHKLKYTIKTDPRVLHSK-IKASKDGWVLFSKANINPSPFLFISYNSSPSSLFF 134
           +  FD   K K      P +  S  I  SKDGW+L     +N S  L        + ++F
Sbjct: 167 YGFFDPVEKKKTKEMNLPELSKSSGILYSKDGWLL-----MNDSLSLI-------ADMYF 214

Query: 135 YNPFSASIIELPPLHMFSSDKA--TFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERT 192
           +NPF+   I+LP   +  S      FS APT   C VF ++   S+  I IST +PG  T
Sbjct: 215 FNPFTRERIDLPRNRIMESVHTNFAFSCAPTKKSCLVFGINNISSSVAIKISTWRPGATT 274

Query: 193 WTR----HFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHNRI--RPTS 246
           W      + F  ++  L  + Y  G+ Y +     LG F  +  +W + P   I   P S
Sbjct: 275 WLHEDFPNLFPSYFRRLGNILYSDGLFYTA-SETALGVFDPTARTWNVLPVQPIPMAPRS 333

Query: 247 VYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPSSTSM 306
           +        +E+EG +  V  D+  L+ +V+R + ++  W +   LD  ++FL+  S  M
Sbjct: 334 IRWM-----TEYEGHIFLV--DASSLEPMVYRLNRLESVWEKKETLDGSSIFLSDGSCVM 386

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSA5|FBK62_ARATH F-box/kelch-repeat protein At3g18720 OS=Arabidopsis thaliana GN=At3g18720 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 128/299 (42%), Gaps = 44/299 (14%)

Query: 21  NLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWLFSCHSISH--- 77
            +P D++  I   L   A+    +    +CK+W    V +++   +PWLF   S      
Sbjct: 51  QIPTDLLQEILSRLGLKAN----IHASLVCKTWLKEAVSVRKFQSRPWLFYPQSQRGGPK 106

Query: 78  -----LFD----TTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSS 128
                LF+     TH LK+   T  R   +K+  +KDGW+L  K N              
Sbjct: 107 EGDYVLFNPSRSQTHHLKFPELTGYR---NKLACAKDGWLLVVKDN-------------- 149

Query: 129 PSSLFFYNPFSASIIELPPLHMFSS-DKATFSTAPTSLFCTVFVL---SVYYSTRRICIS 184
           P  +FF NPF+   I LP +   S+ D  TFS APTS  C V      S  Y+   + + 
Sbjct: 150 PDVVFFLNPFTGERICLPQVPQNSTRDCLTFSAAPTSTSCCVISFTPQSFLYAV--VKVD 207

Query: 185 TCKPGERTWTRHFFD-GFYGD-LHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHNRI 242
           T +PGE  WT H FD   YG+ ++   +  G+ YC   +  L  F  S  +W + P    
Sbjct: 208 TWRPGESVWTTHHFDQKRYGEVINRCIFSNGMFYCLSTSGRLSVFDPSRETWNVLPVKPC 267

Query: 243 RP--TSVYLYYGLIESEHEGSLLSVYYDS-HRLQWLVFRFDLIKENWVEVNRLDDRALF 298
           R     + L   +  +EHEG +  V     +  + L F+ +L    W E+   +   +F
Sbjct: 268 RAFRRKIMLVRQVFMTEHEGDIFVVTTRRVNNRKLLAFKLNLQGNVWEEMKVPNGLTVF 326

Arabidopsis thaliana (taxid: 3702)

>sp|Q1G391|FB217_ARATH F-box protein At4g00893 OS=Arabidopsis thaliana GN=At4g00893 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 158/378 (41%), Gaps = 50/378 (13%)

Query: 5   RRSRRNMKRSATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEIN 64
           +R + + K+    S+++LP  ++    E +       D +R    CKSW    V ++ ++
Sbjct: 31  KRFQDSSKKIMNPSFADLPSSLI----EEIMLLLVLKDNIRASAACKSWYEAGVSVRVVD 86

Query: 65  LQPWLFSCHSISHLFDTTHKLKYTIKT--DPRVLHSKIKASKDGWVLFSKANINPSPFLF 122
             PWL       +LF+    L + + T   P +  S +  S+ GW+L  KA+ N      
Sbjct: 87  KHPWLMCFPKRGNLFEFRDPLHWKLHTLDLPELAESTVCYSRFGWLLMRKASSN------ 140

Query: 123 ISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLS-VYYSTRRI 181
                    +FF+NPFS  II LP   +    +  FS  PTS  C +  +  V     R+
Sbjct: 141 --------DVFFFNPFSRDIISLPMCEL-DFQQIAFSCPPTSDDCVLLAIKFVPGEVNRV 191

Query: 182 CISTCKPGERTWTRHFFDGFYGDLH---GLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYP 238
            +STC PG   W  + F  F    +    L Y R   YC      L +F  S   W    
Sbjct: 192 TVSTCNPGATKWITNDFPTFLRLFYMQSNLVYRRDRFYCFNAEGTLYSFEPSYREWSYIC 251

Query: 239 HNRIRPTSV----YLYYG--LIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNR- 291
            +++R   V    Y++ G  +   E +G L  ++  S+    +   + L    W E++R 
Sbjct: 252 ADKLRCPYVHENQYMWCGKAVFLVEKKGELFVMFTCSNEKPMV---YKLFSMKWKELSRT 308

Query: 292 -LDDRALFLNPSSTSMKLAVDDASELANTIHV--------ECSSSFYKKPEDERLDCPQS 342
            LD    F++  ++ ++   ++   + N ++          C S  +   ++ R + P+ 
Sbjct: 309 TLDGMTFFVSFYNSELR---NNLPWMRNNVYFSRFGYNRKHCVSFSF---DESRYNTPKE 362

Query: 343 FDWILEENPETIVWIQPP 360
           ++  +E  P   +WI  P
Sbjct: 363 WEQWVELCPPQSLWIDTP 380

Arabidopsis thaliana (taxid: 3702)

>sp|Q1G3I7|FB232_ARATH F-box protein At4g12382 OS=Arabidopsis thaliana GN=At4g12382 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 20/137 (14%)

Query: 12  KRSATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWLFS 71
           K+    S+++LP  ++ +I  +L       + +R    CKSW    V ++ +   PWL  
Sbjct: 3   KKIMNPSFADLPSSLIEVIMSHL----ALKNNIRASAACKSWYEVGVSVRVVEKHPWLIC 58

Query: 72  CHSISHLFDTTHKLKYTIKT--DPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSP 129
                +LF+    L + + T   P +  S +  S+ GW+L  KA              + 
Sbjct: 59  FPKRGNLFEFRDPLHWKLYTLGLPELAESTVCYSRFGWLLMRKA--------------TS 104

Query: 130 SSLFFYNPFSASIIELP 146
             +FF+NPFS  II LP
Sbjct: 105 KDVFFFNPFSRDIISLP 121

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
359806246	376	uncharacterized protein LOC100809651 [Gl	0.827	0.840	0.277	2e-24
297816970	359	F-box family protein [Arabidopsis lyrata	0.842	0.896	0.269	3e-24
356548441	376	PREDICTED: F-box/kelch-repeat protein At	0.827	0.840	0.277	4e-24
147834369	404	hypothetical protein VITISV_038350 [Viti	0.897	0.849	0.285	1e-23
15228928	367	F-box protein [Arabidopsis thaliana] gi|	0.837	0.871	0.270	4e-22
147769598	371	hypothetical protein VITISV_031827 [Viti	0.685	0.706	0.293	3e-21
255636866	376	unknown [Glycine max]	0.861	0.875	0.258	6e-21
224140101	344	predicted protein [Populus trichocarpa]	0.827	0.918	0.258	8e-21
356572568	376	PREDICTED: F-box/kelch-repeat protein At	0.861	0.875	0.255	8e-21
18406073	352	F-box protein [Arabidopsis thaliana] gi|	0.861	0.934	0.25	1e-20

>gi|359806246|ref|NP_001241212.1| uncharacterized protein LOC100809651 [Glycine max] gi|255641457|gb|ACU21004.1| unknown [Glycine max]

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 158/364 (43%), Gaps = 48/364 (13%)

Query: 17  KSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWLFSCHSIS 76
           ++WS+LP +++ LI   L       D VR   +CK W S    +  +N  PWL       
Sbjct: 34  QTWSDLPTELLELILSRL----SLDDNVRASVVCKRWHSVATSVCVVNQSPWLMYFPKFG 89

Query: 77  ---HLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLF 133
                +D  H+  Y+I+  P +  S++  +KDGW+L               Y      +F
Sbjct: 90  DWYEFYDPAHRKTYSIEL-PELRGSRVCYTKDGWLLL--------------YRPRTHRVF 134

Query: 134 FYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTW 193
           F+NPF+  II+LP   M S     FS APTS  C +F +  + S   + ISTC PG   W
Sbjct: 135 FFNPFTMEIIKLPRFEM-SYQIVAFSCAPTSPDCVLFTVK-HVSPTVVAISTCYPGATEW 192

Query: 194 TRHFFDG---FYGDL-HGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIY-------PHNRI 242
           T   +     F   + + L +  G+ YC      LG F  S  +W +        P N  
Sbjct: 193 TTLSYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFNSSERTWSVLSVPPPKCPENFF 252

Query: 243 RPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPS 302
                  + G   +EHEG ++ +Y  S     ++F+ D +   W E+  LD   LF +  
Sbjct: 253 AKN---WWKGKFMTEHEGDIIVIYTCSSENP-IIFKLDQMLMEWEEMTTLDGVTLFASFL 308

Query: 303 STSMKLAVDDASELANTIHVECSSSFYKKPEDERL-DC-----PQSFDWILEENPETIVW 356
           S+  +  +D    + N+++      + K+     L DC      Q  DW  E++P   +W
Sbjct: 309 SSHAR--IDLPGIMRNSVYFSKVRFYGKRCISFSLDDCRYYPRKQWHDW-GEQDPFENIW 365

Query: 357 IQPP 360
           I+PP
Sbjct: 366 IEPP 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816970|ref|XP_002876368.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297322206|gb|EFH52627.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 157/364 (43%), Gaps = 42/364 (11%)

Query: 6   RSRRNMKRSATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINL 65
           +SR+  ++  T  + NLP D++ L+   L       D +R   +CK+W   CV L+ ++ 
Sbjct: 9   QSRKEKEKDQT--FINLPSDLLQLVISRL----SLKDNIRASAVCKTWHEACVSLRVVHT 62

Query: 66  QPWL--FSCHSISH-LFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLF 122
            PWL  FS    S+ L+D + +  Y +   P +   ++  SKDGW+L             
Sbjct: 63  SPWLIYFSKTDESYELYDPSMQKTYNLHF-PELSGFRVCYSKDGWLLM------------ 109

Query: 123 ISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRIC 182
             YN++   L F+NPF+   I +PPL M    +  FS APTS  C +F +S   +   I 
Sbjct: 110 --YNANSYKLLFFNPFTRDHIPVPPLWMAYDQRMAFSCAPTSTSCLLFTISS-VTWNYIT 166

Query: 183 ISTCKPGERTWTRHFFDGF----YGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYP 238
           I TC    + W    F       +     + +  GV YC      L  F  S NSW + P
Sbjct: 167 IKTCCADAQEWKTFEFKNRLPRNFNTFEQIVFSNGVFYCLTNTGCLALFDPSLNSWNVLP 226

Query: 239 HNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALF 298
               RP       G   +EH+G +  +Y   H +   V + DL   +W E   L    ++
Sbjct: 227 G---RPPKRPGSNGCFMTEHQGEIFLIYMYRH-MNPTVLKLDLTSFDWTERKTLGGLTIY 282

Query: 299 LNPSSTSMKLAVDDASELANTIHVECSSSF-----YKKPEDERLDCPQSFDWILEENPET 353
            +  S+  +      S ++N + +     F     Y + ++E   C   F W  ++NP  
Sbjct: 283 ASALSSESRAEQQKPSGISNCLCLSVFHGFKRTCIYYEVDEESEIC---FKW-RKQNPYE 338

Query: 354 IVWI 357
            +WI
Sbjct: 339 NIWI 342

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548441|ref|XP_003542610.1| PREDICTED: F-box/kelch-repeat protein At1g57790-like [Glycine max]

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 156/364 (42%), Gaps = 48/364 (13%)

Query: 17  KSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWLFSCHSIS 76
           ++WS+LP +++ LI   L       D VR   +CK W S    +  +N  PWL       
Sbjct: 34  QTWSDLPTELLELILSRL----SLDDNVRASVVCKRWHSVATSVCVVNQSPWLMYFPKFG 89

Query: 77  ---HLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLF 133
                +D  H+  Y+I+  P +  S++  +KDGW+L               Y      +F
Sbjct: 90  DWYEFYDPVHRKTYSIEL-PELSGSRVCYTKDGWLLL--------------YRPRTHRVF 134

Query: 134 FYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTW 193
           F+NPF+  II+LP   M S     FS APTS  C +F +  + S   + ISTC PG   W
Sbjct: 135 FFNPFTQEIIKLPRFEM-SYQIVAFSCAPTSSDCVLFTVK-HVSPTVVAISTCYPGATEW 192

Query: 194 TRHFFDG---FYGDL-HGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIY-------PHNRI 242
           T   +     F   + + L +  G+ YC      LG F  S  +W +        P N  
Sbjct: 193 TTVSYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDSSERTWSVLSVPPPKCPENFF 252

Query: 243 RPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPS 302
                  + G   +EHEG ++ +Y  S+    ++F+ DL    W E+  LD   LF +  
Sbjct: 253 AKN---WWKGKFMTEHEGDIIVIYTCSNENP-IIFKLDLTLLEWEEMTTLDGVTLFASFL 308

Query: 303 STSMKLAVDDASELANTIHVECSSSFYKKPEDERLDC------PQSFDWILEENPETIVW 356
           S+  +   D    + N++       + K+     LD        Q  DW  E++P   +W
Sbjct: 309 SSHAR--TDLHGIMRNSVFFSKVRFYGKRCISFSLDGYRYYPRKQWHDW-GEQDPFENIW 365

Query: 357 IQPP 360
           I+PP
Sbjct: 366 IEPP 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834369|emb|CAN69847.1| hypothetical protein VITISV_038350 [Vitis vinifera]

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 167/400 (41%), Gaps = 57/400 (14%)

Query: 10  NMKRSATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQ-STCVPLKEINLQPW 68
           +M    T+ WS+LP D++  I E LY     AD+VR R +CK W       +K I+  PW
Sbjct: 19  HMDEIETRPWSDLPQDLIVSIMERLYV----ADRVRLRGVCKDWHLQPNRGIKAIDKLPW 74

Query: 69  LF----------SCHSISHLFDTTH---KLKYTIKTD-----PRVLHSKIKASKDGWVLF 110
                       S  S+  L++  H   +L Y ++             +++AS+  WVLF
Sbjct: 75  TMEYKWRNPKSISFWSVCKLYEPLHHNRRLSYMVEKGRMRGRKNFAKGEVRASRYSWVLF 134

Query: 111 SKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVF 170
            K +     F            FF+NPF+  +I LP      S+ ATFS APTS  C VF
Sbjct: 135 YKDDYWQGKF------------FFFNPFTKEVIFLPCFESPVSEFATFSLAPTSPHCFVF 182

Query: 171 VLSVYYSTRRICISTCKPGERTWTRHFF---DGFYGDLHGLTYLRGVLYCSFCNNVLGAF 227
           V     +   I I+     ++TW  H     D   G L  + Y+ G  YC F +  L AF
Sbjct: 183 V-PYERNYNEISINIYSHADKTWKTHDLVANDHPLGTLKAVGYMEGTFYCHFSSFHLAAF 241

Query: 228 RVSTNSWKIY----PHNRIRPTSVYLYYG---LIESEHEGSLLSVYYDSHRLQW---LVF 277
            ++     +     P       S++ Y+    L+E   EG LL VY       W    V 
Sbjct: 242 NIADQELSLVMTTCPAMDHLDDSLFNYFSRSYLLEC--EGDLLLVYLFESLSCWHQLYVL 299

Query: 278 RFDLIKENWVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVECSSSFYKKPEDERL 337
           + D  +  WV V+RL  RA+FL  +S  +  A  +   +AN I+          PE + L
Sbjct: 300 KLDWSRNEWVRVSRLGGRAMFLGETSFCVS-AGGETEIIANRIYYHHDGV----PEFQTL 354

Query: 338 DCPQSFDWILEENPETIVWIQPPLKRGDTGIQISNCRDEL 377
           D   SFD     + + + W +   +    G     CR  L
Sbjct: 355 DLC-SFDEYDSRDHDYLTWQKEKKREAGNGKIYGYCRKSL 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228928|ref|NP_191206.1| F-box protein [Arabidopsis thaliana] gi|75180981|sp|Q9LXZ3.1|FB204_ARATH RecName: Full=F-box protein At3g56470 gi|7594525|emb|CAB88050.1| putative protein [Arabidopsis thaliana] gi|332646004|gb|AEE79525.1| F-box protein [Arabidopsis thaliana]

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 151/362 (41%), Gaps = 42/362 (11%)

Query: 17  KSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWL--FSCHS 74
           +++ NLP D++ L+   L       D +R   +CK+W   CV L+ I+  PWL  FS   
Sbjct: 27  QTFINLPCDLLQLVISRL----PLKDNIRASAVCKTWHEACVSLRVIHTSPWLIYFSKTD 82

Query: 75  ISH-LFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLF 133
            S+ L+D + +    +   P +   ++  SKDGW+L               YN +   L 
Sbjct: 83  DSYELYDPSMQKNCNLHF-PELSGFRVCYSKDGWLLM--------------YNPNSYQLL 127

Query: 134 FYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVF-VLSVYYSTRRICISTCKPGERT 192
           F+NPF+   + +P L M    +  FS APTS  C +F V SV ++   I I T     + 
Sbjct: 128 FFNPFTRDCVPMPTLWMAYDQRMAFSCAPTSTSCLLFTVTSVTWN--YITIKTYFANAKE 185

Query: 193 WTRHFFDGF----YGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHNRIRPTSVY 248
           W    F       +     + +  GV YC      L  F  S N W + P    RP    
Sbjct: 186 WKTSVFKNRLQRNFNTFEQIVFSNGVFYCLTNTGCLALFDPSLNYWNVLPG---RPPKRP 242

Query: 249 LYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPSSTSMKL 308
              G   +EH+G +  +Y   H +   V + DL    W E   L    ++ +  S+  + 
Sbjct: 243 GSNGCFMTEHQGEIFLIYMYRH-MNPTVLKLDLTSFEWAERKTLGGLTIYASALSSESRA 301

Query: 309 AVDDASELANTIHVECSSSF-----YKKPEDERLDCPQSFDWILEENPETIVWIQPPLKR 363
                S + N + +     F     Y K ++E   C   F W  ++NP   +WI PPL  
Sbjct: 302 EQQKQSGIWNCLCLSVFHGFKRTCIYYKVDEESEVC---FKW-KKQNPYENIWIMPPLNL 357

Query: 364 GD 365
            D
Sbjct: 358 ID 359

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769598|emb|CAN61398.1| hypothetical protein VITISV_031827 [Vitis vinifera]

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 145/320 (45%), Gaps = 58/320 (18%)

Query: 4   NRRSRRNMKRSATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVP-LKE 62
             R R +   +  + WS+L PDI+ LI + LY      D++RF+ +CK W    +  ++ 
Sbjct: 24  GERKRSSKCGTKIRPWSDLLPDILRLIVQRLYL----GDRIRFQAVCKGWLHLPITDIQP 79

Query: 63  INLQPWLFS-----CHSISHLFDTTHKL------KYTIKTDPRVLHSKIKASKDGWVLFS 111
           I   PW+ +       S+  LF+ + +L      K  ++   ++  +K+ AS+ GW LFS
Sbjct: 80  IEELPWIMNYAFTPTSSVCALFEPSRRLPHINRSKSDLRKPSKLFLAKVCASRAGWALFS 139

Query: 112 KANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHM-FSSDKATFSTAPTSLFCTVF 170
           K    P  F         +S F YNP S  II LP L   + +D ATFS+APTS  C VF
Sbjct: 140 KKAKEPVKF---------TSYFVYNPLSKEIISLPNLKWPYCNDVATFSSAPTSSDC-VF 189

Query: 171 VLSVYYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCNNVLG---AF 227
            +  +Y   R+ IST   G   W    F   +  +       GV+Y     +++G    F
Sbjct: 190 FVPHHYKDGRVFISTYSIGNIEWKTWEFSASHRPIQS----SGVVYLDGRQSMVGELTCF 245

Query: 228 RVSTN---------SWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRL----QW 274
            ++T          SW  +P    RP S +L YG       G L  VY  +       Q 
Sbjct: 246 NIATQECKSLKRYLSWINFP----RPPSHFLVYG-------GHLCVVYLRNSDAGKPPQC 294

Query: 275 LVFRFDLIKENWVEVNRLDD 294
            +F+FD + + W+E+  L+ 
Sbjct: 295 TIFKFDWLNKAWIEMESLEG 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636866|gb|ACU18766.1| unknown [Glycine max]

 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 158/379 (41%), Gaps = 50/379 (13%)

Query: 4   NRRSRRNMKRS--ATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLK 61
           NRR+   +K      +SW++LP +++  I   L      AD +R   +C+ W S    ++
Sbjct: 19  NRRTVAEVKSENLEMQSWADLPAELLESILSRLIL----ADNIRASAVCRRWHSVASDVR 74

Query: 62  EINLQPWLFSCHSIS---HLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPS 118
            +N  PWL            +D   +  +T +  P +  S++  +KDGW+L         
Sbjct: 75  VVNQSPWLMYFPKFGDCYEFYDPVQRKTHTFEL-PELNGSRVCYTKDGWLLL-------- 125

Query: 119 PFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYST 178
                 Y      +FF+NPF+  +I+LP   M     A FS APTS  C +F +  + S 
Sbjct: 126 ------YRPRTHRVFFFNPFTRELIKLPRFEMIYQIVA-FSCAPTSPGCVLFTVK-HVSP 177

Query: 179 RRICISTCKPGERTWTRHFFDG---FYGDL-HGLTYLRGVLYCSFCNNVLGAFRVSTNSW 234
             + ISTC PG   WT   +     F   + + L +  G+ YC      LG F     +W
Sbjct: 178 TVVAISTCYPGATEWTTVNYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPVECTW 237

Query: 235 KIY-------PHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWV 287
            +        P N         + G   +EHEG +L +Y        ++F+ D     W 
Sbjct: 238 SVLAVPPPKCPENFFAKN---WWKGKFMTEHEGDILVIYTCCSENP-IIFKLDQTLMKWE 293

Query: 288 EVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVECSSSFYKKPEDERLD------CPQ 341
           E+  LD   LF +  S+  +   D    + N+++      + K+     LD        Q
Sbjct: 294 EMTTLDGVTLFASFLSSHSR--TDLIGIMRNSVYFSKVRFYGKRCISFSLDDYRYYPRKQ 351

Query: 342 SFDWILEENPETIVWIQPP 360
             DW  E++P   +WI+PP
Sbjct: 352 CHDW-GEQDPFENIWIEPP 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140101|ref|XP_002323425.1| predicted protein [Populus trichocarpa] gi|222868055|gb|EEF05186.1| predicted protein [Populus trichocarpa]

 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 156/364 (42%), Gaps = 48/364 (13%)

Query: 17  KSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWLF---SCH 73
           ++WS+LP +++ LI   L       D +R    CK W +  + ++ +N  PWL       
Sbjct: 2   QTWSDLPIELLELIFCRL----SLEDNIRSSIACKRWNTAAISVRVVNHSPWLMYFPKFG 57

Query: 74  SISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLF 133
           ++   +D   +  Y+++  P +  S++  +KDGW+L  +   N               +F
Sbjct: 58  NMYEFYDPAQRKTYSLEL-PELYGSRVCYTKDGWLLLYRPRTN--------------RVF 102

Query: 134 FYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTW 193
           F+NPFS  +++LP   + +     FS APTS  C VF +  + S   + ISTC PG   W
Sbjct: 103 FFNPFSREVVKLPRFEL-TYQIVAFSCAPTSNTCVVFTVR-HISPTIVAISTCHPGATEW 160

Query: 194 TRHFFDG---FYGDL-HGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIY-------PHNRI 242
               +     F   + + + +  G  YC      LG F    ++W +        P N  
Sbjct: 161 VTVNYQNRLPFVSSIWNKIVFCNGFFYCLSLTGWLGVFDPLEHTWSVLAVPPPKCPENFF 220

Query: 243 RPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPS 302
                  + G   SEH G +L +Y        ++F+ D  K  W E+  LD   LF +  
Sbjct: 221 AKN---WWKGKFMSEHNGDILVIYTCCSENP-IIFKLDQSKMFWREMKTLDGMTLFASFL 276

Query: 303 STSMKLAVDDASELANTIHVECSSSFYKKPEDERL-DC-----PQSFDWILEENPETIVW 356
           S+  +   D    + N+++      F K+     L DC      Q  DW  E++P   +W
Sbjct: 277 SSHSR--SDLPGMMRNSVYFSKVRFFGKRCISYSLDDCRYYPRKQCHDW-GEQDPFENIW 333

Query: 357 IQPP 360
           I+PP
Sbjct: 334 IEPP 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572568|ref|XP_003554440.1| PREDICTED: F-box/kelch-repeat protein At1g57790-like [Glycine max]

 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 158/379 (41%), Gaps = 50/379 (13%)

Query: 4   NRRSRRNMKRS--ATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLK 61
           NRR+   +K      +SW++LP +++  I   L      AD +R   +C+ W S    ++
Sbjct: 19  NRRTVAEVKSENLEMQSWADLPAELLESILSRLIL----ADNIRASAVCRRWHSVASDVR 74

Query: 62  EINLQPWLFSCHSIS---HLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPS 118
            +N  PWL            +D   +  +T +  P +  S++  +KDGW+L         
Sbjct: 75  VVNQSPWLMYFPKFGDCYEFYDPVQRKTHTFEL-PELNGSRVCYTKDGWLLL-------- 125

Query: 119 PFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYST 178
                 Y      +FF+NPF+  +I+LP   M +     FS APTS  C +F +  + S 
Sbjct: 126 ------YRPRTHRVFFFNPFTRELIKLPRFEM-TYQIVAFSCAPTSPGCVLFTVK-HVSP 177

Query: 179 RRICISTCKPGERTWTRHFFDG---FYGDL-HGLTYLRGVLYCSFCNNVLGAFRVSTNSW 234
             + ISTC PG   WT   +     F   + + L +  G+ YC      LG F     +W
Sbjct: 178 TVVAISTCYPGATEWTTVNYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPVECTW 237

Query: 235 KIY-------PHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWV 287
            +        P N         + G   +EHEG +L +Y        ++F+ D     W 
Sbjct: 238 SVLAVPPPKCPENFFAKN---WWKGKFMTEHEGDILVIYTCCSENP-IIFKLDQTLMKWE 293

Query: 288 EVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVECSSSFYKKPEDERLD------CPQ 341
           E+  LD   LF +  S+  +   D    + N+++      + K+     LD        Q
Sbjct: 294 EMTTLDGVTLFASFLSSHSR--TDLIGIMRNSVYFSKVRFYGKRCISFSLDDYRYYPRKQ 351

Query: 342 SFDWILEENPETIVWIQPP 360
             DW  E++P   +WI+PP
Sbjct: 352 CHDW-GEQDPFENIWIEPP 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406073|ref|NP_564725.1| F-box protein [Arabidopsis thaliana] gi|75172668|sp|Q9FVS1.1|FBK23_ARATH RecName: Full=F-box/kelch-repeat protein At1g57790 gi|11079521|gb|AAG29231.1|AC079732_2 hypothetical protein [Arabidopsis thaliana] gi|20466201|gb|AAM20418.1| unknown protein [Arabidopsis thaliana] gi|30984578|gb|AAP42752.1| At1g57790 [Arabidopsis thaliana] gi|332195346|gb|AEE33467.1| F-box protein [Arabidopsis thaliana]

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 157/364 (43%), Gaps = 35/364 (9%)

Query: 10  NMKRSATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWL 69
           N    +   W +LP ++++ +      + +  D VR   +CKSW    V ++ I+  PWL
Sbjct: 4   NTNEGSKNLWKDLPLELLSSVMT----FLEIKDNVRASVVCKSWFEAAVSVRVIDKSPWL 59

Query: 70  F---SCHSISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYN 126
                  +    +D ++  KYT++    ++   ++ SKDGW+L S+ +            
Sbjct: 60  MYFPETKNTYDFYDPSNCKKYTMELPKSLVGFIVRYSKDGWLLMSQED------------ 107

Query: 127 SSPSSLFFYNPFSASIIELPPLHMFSSDK-ATFSTAPTSLFCTVFVLSVYYSTRRICIST 185
              S    +NPF+  ++ LP LH+F+  +   FS+APTS  C VF +   Y    + I T
Sbjct: 108 --SSHFVLFNPFTMDVVALPFLHLFTYYQLVGFSSAPTSSECVVFTIKD-YDPGHVTIRT 164

Query: 186 CKPGERTWTRHFFDGFYGDL--HGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHNRIR 243
             PG+  WT    +  + D+  + + +  GV YC    N +  F  S  +W +      R
Sbjct: 165 WSPGQTMWTSMQVESQFLDVDHNNVVFSNGVFYCLNQRNHVAVFDPSLRTWNVLDVPPPR 224

Query: 244 -PTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPS 302
            P       G     ++G +L +    ++   LVF+ DL +  W E + L    +F++  
Sbjct: 225 CPDDKSWNEGKFMVGYKGDILVIRTYENKDP-LVFKLDLTRGIWEEKDTLGSLTIFVSRK 283

Query: 303 STSMKLAVDDASELANTIHV------ECSSSFYKKPEDERLDCPQSFDWILEENPETIVW 356
           S   +  V D   L N+++       E  S  Y   E          DW  + + + I W
Sbjct: 284 SCESRTYVKDGM-LRNSVYFPELCYNEKQSVVYSFDEGRYHLREHDLDWGKQLSSDNI-W 341

Query: 357 IQPP 360
           I+PP
Sbjct: 342 IEPP 345

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
TAIR|locus:2102519	367	AT3G56470 "AT3G56470" [Arabido	0.858	0.893	0.264	2.4e-28
TAIR|locus:2009430	352	AT1G57790 "AT1G57790" [Arabido	0.858	0.931	0.263	4e-26
TAIR|locus:2010172	481	AT1G49360 "AT1G49360" [Arabido	0.767	0.609	0.273	2.7e-21
TAIR|locus:4010713853	388	AT4G00893 [Arabidopsis thalian	0.869	0.855	0.240	1.1e-19
TAIR|locus:2094004	380	AT3G18720 "AT3G18720" [Arabido	0.774	0.778	0.266	1.4e-18
TAIR|locus:504955409	234	AT4G10695 "AT4G10695" [Arabido	0.468	0.764	0.287	2.6e-16
TAIR|locus:2139207	317	AT4G10660 "AT4G10660" [Arabido	0.609	0.735	0.278	4e-14
TAIR|locus:4515103379	138	AT4G12382 "AT4G12382" [Arabido	0.332	0.920	0.273	3.6e-08
TAIR|locus:2139064	300	AT4G12370 "AT4G12370" [Arabido	0.701	0.893	0.244	3.7e-08
TAIR|locus:504956069	367	AT2G44735 "AT2G44735" [Arabido	0.345	0.359	0.299	3e-07

TAIR|locus:2102519 AT3G56470 "AT3G56470" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 98/370 (26%), Positives = 156/370 (42%)

Query:     5 RRSRRNMKRSATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEIN 64
             R+ + + ++   +++ NLP D++ L+   L       D +R   +CK+W   CV L+ I+
Sbjct:    15 RKKQSSKEKEKYQTFINLPCDLLQLVISRL----PLKDNIRASAVCKTWHEACVSLRVIH 70

Query:    65 LQPWL--FSCHSISH-LFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFL 121
               PWL  FS    S+ L+D + +    +   P +   ++  SKDGW+L            
Sbjct:    71 TSPWLIYFSKTDDSYELYDPSMQKNCNLHF-PELSGFRVCYSKDGWLLM----------- 118

Query:   122 FISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVF-VLSVYYSTRR 180
                YN +   L F+NPF+   + +P L M    +  FS APTS  C +F V SV ++   
Sbjct:   119 ---YNPNSYQLLFFNPFTRDCVPMPTLWMAYDQRMAFSCAPTSTSCLLFTVTSVTWNY-- 173

Query:   181 ICISTCKPGERTWTRHFFDGF----YGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKI 236
             I I T     + W    F       +     + +  GV YC      L  F  S N W +
Sbjct:   174 ITIKTYFANAKEWKTSVFKNRLQRNFNTFEQIVFSNGVFYCLTNTGCLALFDPSLNYWNV 233

Query:   237 YPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRA 296
              P    RP       G   +EH+G +  +Y   H +   V + DL    W E   L    
Sbjct:   234 LPG---RPPKRPGSNGCFMTEHQGEIFLIYMYRH-MNPTVLKLDLTSFEWAERKTLGGLT 289

Query:   297 LFLNPSSTSMKLAVDDASELANTIHVECSSSF-----YKKPEDERLDCPQSFDWILEENP 351
             ++ +  S+  +      S + N + +     F     Y K ++E   C   F W  ++NP
Sbjct:   290 IYASALSSESRAEQQKQSGIWNCLCLSVFHGFKRTCIYYKVDEESEVC---FKW-KKQNP 345

Query:   352 ETIVWIQPPL 361
                +WI PPL
Sbjct:   346 YENIWIMPPL 355

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009430 AT1G57790 "AT1G57790" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 96/365 (26%), Positives = 160/365 (43%)

Query:    10 NMKRSATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWL 69
             N    +   W +LP ++++ +      + +  D VR   +CKSW    V ++ I+  PWL
Sbjct:     4 NTNEGSKNLWKDLPLELLSSVMT----FLEIKDNVRASVVCKSWFEAAVSVRVIDKSPWL 59

Query:    70 F---SCHSISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYN 126
                    +    +D ++  KYT++    ++   ++ SKDGW+L S+ +            
Sbjct:    60 MYFPETKNTYDFYDPSNCKKYTMELPKSLVGFIVRYSKDGWLLMSQED------------ 107

Query:   127 SSPSSLFFYNPFSASIIELPPLHMFSSDKAT-FSTAPTSLFCTVFVLSVYYSTRRICIST 185
             SS   LF  NPF+  ++ LP LH+F+  +   FS+APTS  C VF +  Y     + I T
Sbjct:   108 SSHFVLF--NPFTMDVVALPFLHLFTYYQLVGFSSAPTSSECVVFTIKDY-DPGHVTIRT 164

Query:   186 CKPGERTWTRHFFDGFYGDL-HG-LTYLRGVLYCSFCNNVLGAFRVSTNSWKIY--PHNR 241
               PG+  WT    +  + D+ H  + +  GV YC    N +  F  S  +W +   P  R
Sbjct:   165 WSPGQTMWTSMQVESQFLDVDHNNVVFSNGVFYCLNQRNHVAVFDPSLRTWNVLDVPPPR 224

Query:   242 IRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNP 301
               P       G     ++G +L +    ++   LVF+ DL +  W E + L    +F++ 
Sbjct:   225 C-PDDKSWNEGKFMVGYKGDILVIRTYENK-DPLVFKLDLTRGIWEEKDTLGSLTIFVSR 282

Query:   302 SSTSMKLAVDDASELANTIHV------ECSSSFYKKPEDERLDCPQSFDWILEENPETIV 355
              S   +  V D   L N+++       E  S  Y   E          DW  + + + I 
Sbjct:   283 KSCESRTYVKDGM-LRNSVYFPELCYNEKQSVVYSFDEGRYHLREHDLDWGKQLSSDNI- 340

Query:   356 WIQPP 360
             WI+PP
Sbjct:   341 WIEPP 345

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010172 AT1G49360 "AT1G49360" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 92/336 (27%), Positives = 148/336 (44%)

Query:    22 LPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWL-----FSCHSIS 76
             LP D+V LI   L     + D +R  T+CK+W      ++  + + WL     F    +S
Sbjct:   111 LPSDLVRLILSRL----SFKDNIRSSTVCKAWGDIAASVRVKSRRCWLLYHDAFQDKGVS 166

Query:    77 H-LFDTTHKLKYTIKTDPRVLHSK-IKASKDGWVLFSKANINPSPFLFISYNSSPSSLFF 134
             +  FD   K K      P +  S  I  SKDGW+L     +N S  L        + ++F
Sbjct:   167 YGFFDPVEKKKTKEMNLPELSKSSGILYSKDGWLL-----MNDSLSLI-------ADMYF 214

Query:   135 YNPFSASIIELPPLHMFSS--DKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERT 192
             +NPF+   I+LP   +  S      FS APT   C VF ++   S+  I IST +PG  T
Sbjct:   215 FNPFTRERIDLPRNRIMESVHTNFAFSCAPTKKSCLVFGINNISSSVAIKISTWRPGATT 274

Query:   193 WTR----HFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHNRI--RPTS 246
             W      + F  ++  L  + Y  G+ Y +     LG F  +  +W + P   I   P S
Sbjct:   275 WLHEDFPNLFPSYFRRLGNILYSDGLFYTA-SETALGVFDPTARTWNVLPVQPIPMAPRS 333

Query:   247 VYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLDDRALFLNPSSTSM 306
             +        +E+EG +  V  D+  L+ +V+R + ++  W +   LD  ++FL+  S  M
Sbjct:   334 IRWM-----TEYEGHIFLV--DASSLEPMVYRLNRLESVWEKKETLDGSSIFLSDGSCVM 386

Query:   307 KLAVDDASELANTIHVECSSSFYKKPEDERLDCPQS 342
                +     ++N ++    S F  +    +  CP S
Sbjct:   387 TYGL--TGSMSNILYFW--SRFINERRSTKSPCPFS 418

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713853 AT4G00893 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 90/374 (24%), Positives = 159/374 (42%)

Query:     7 SRRNMKRSATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQ 66
             SR+  + S+ K  +    D+ + + E +       D +R    CKSW    V ++ ++  
Sbjct:    29 SRKRFQDSSKKIMNPSFADLPSSLIEEIMLLLVLKDNIRASAACKSWYEAGVSVRVVDKH 88

Query:    67 PWLFSCHSISHLFDTTHKLKYTIKT-D-PRVLHSKIKASKDGWVLFSKANINPSPFLFIS 124
             PWL       +LF+    L + + T D P +  S +  S+ GW+L  KA+ N        
Sbjct:    89 PWLMCFPKRGNLFEFRDPLHWKLHTLDLPELAESTVCYSRFGWLLMRKASSN-------- 140

Query:   125 YNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLS-VYYSTRRICI 183
                    +FF+NPFS  II LP   +    +  FS  PTS  C +  +  V     R+ +
Sbjct:   141 ------DVFFFNPFSRDIISLPMCEL-DFQQIAFSCPPTSDDCVLLAIKFVPGEVNRVTV 193

Query:   184 STCKPGERTWTRHFFDGFYGDLH---GLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHN 240
             STC PG   W  + F  F    +    L Y R   YC      L +F  S   W     +
Sbjct:   194 STCNPGATKWITNDFPTFLRLFYMQSNLVYRRDRFYCFNAEGTLYSFEPSYREWSYICAD 253

Query:   241 RIRPTSV----YLYYG--LIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNR--L 292
             ++R   V    Y++ G  +   E +G L  ++  S+    +V++  L    W E++R  L
Sbjct:   254 KLRCPYVHENQYMWCGKAVFLVEKKGELFVMFTCSNEKP-MVYK--LFSMKWKELSRTTL 310

Query:   293 DDRALFLNPSSTSMKLAVDDASELANTIHVECSSSFYKKP------EDERLDCPQSFDWI 346
             D    F++  ++ ++   ++   + N ++      + +K       ++ R + P+ ++  
Sbjct:   311 DGMTFFVSFYNSELR---NNLPWMRNNVYFS-RFGYNRKHCVSFSFDESRYNTPKEWEQW 366

Query:   347 LEENPETIVWIQPP 360
             +E  P   +WI  P
Sbjct:   367 VELCPPQSLWIDTP 380

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2094004 AT3G18720 "AT3G18720" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 92/345 (26%), Positives = 145/345 (42%)

Query:    19 WSN-LPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWLFSCHSISH 77
             W   +P D++  I   L   A+    +    +CK+W    V +++   +PWLF   S   
Sbjct:    48 WDKQIPTDLLQEILSRLGLKAN----IHASLVCKTWLKEAVSVRKFQSRPWLFYPQSQRG 103

Query:    78 --------LFDT----THKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISY 125
                     LF+     TH LK+   T  R   +K+  +KDGW+L  K N           
Sbjct:   104 GPKEGDYVLFNPSRSQTHHLKFPELTGYR---NKLACAKDGWLLVVKDN----------- 149

Query:   126 NSSPSSLFFYNPFSASIIELPPLHMFSS-DKATFSTAPTSLFCTVFVL---SVYYSTRRI 181
                P  +FF NPF+   I LP +   S+ D  TFS APTS  C V      S  Y+   +
Sbjct:   150 ---PDVVFFLNPFTGERICLPQVPQNSTRDCLTFSAAPTSTSCCVISFTPQSFLYAV--V 204

Query:   182 CISTCKPGERTWTRHFFDGF-YGD-LHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPH 239
              + T +PGE  WT H FD   YG+ ++   +  G+ YC   +  L  F  S  +W + P 
Sbjct:   205 KVDTWRPGESVWTTHHFDQKRYGEVINRCIFSNGMFYCLSTSGRLSVFDPSRETWNVLPV 264

Query:   240 NRIRP--TSVYLYYGLIESEHEGSLLSVYYDS-HRLQWLVFRFDLIKENWVEVNRLDDRA 296
                R     + L   +  +EHEG +  V     +  + L F+ +L    W E+   +   
Sbjct:   265 KPCRAFRRKIMLVRQVFMTEHEGDIFVVTTRRVNNRKLLAFKLNLQGNVWEEMKVPNGLT 324

Query:   297 LFLNPSSTSMKLAVDDASELANTIHVECSSSFYKK--PEDERLDC 339
             +F + +++  +  + +  E  N ++      F K   P     DC
Sbjct:   325 VFSSDATSLTRAGLPE--EERNILYSSDIDDFVKSSHPTFYYYDC 367

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955409 AT4G10695 "AT4G10695" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 59/205 (28%), Positives = 91/205 (44%)

Query:    37 YADYADQVRFRTICKSWQSTCVPLKEINLQPWLFSC---HSISHLFDTTHKLKYTIKTDP 93
             Y    D +R   +C++W+     ++ +   PW+ S    + ++ LFD   +  YT+   P
Sbjct:     3 YLGLKDNIRASAVCRAWRKAAESVRVVEKHPWVISFPRHYGVTILFDPLGRKSYTLNL-P 61

Query:    94 RVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSS 153
              ++ + +  SKDGW+L  +              SS   +FF NP++  +I LP   + S 
Sbjct:    62 ELVGTDVCYSKDGWLLMRR--------------SSLVDMFFLNPYTRELINLPKCEL-SF 106

Query:   154 DKATFSTAPTSLFCTVFVLSVYYSTRRIC-ISTCKPGERTWTRHFFD---GFYGDLHG-L 208
                 FS+ PTS  C V  L  +  TR I  IS C PG   W    F    GF   +H  L
Sbjct:   107 QAVAFSSVPTSGTCAVIALRPF--TRFIIRISICFPGATEWITQDFSCSHGFEPYMHSNL 164

Query:   209 TYLRGVLYCSFCNNVLGAFRVSTNS 233
              Y  G  YC     VL  F +++ +
Sbjct:   165 VYANGHFYCFSSGGVLVDFDLASRT 189

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2139207 AT4G10660 "AT4G10660" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 4.0e-14, P = 4.0e-14
 Identities = 77/276 (27%), Positives = 124/276 (44%)

Query:    55 STCVPLKEINLQPWL--FSCHS-ISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFS 111
             +T   ++ +   PW+  F  H  ++ LFD   + +YT+   P ++ + +  SKDGW+L  
Sbjct:     7 TTAESVRVVEKHPWVITFPNHEDLTFLFDPLERKRYTLNL-PELVGTDVCYSKDGWLLMR 65

Query:   112 KANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFV 171
             +              SS   +FF+NP++  +I LP   + +     FS+APTS  C V  
Sbjct:    66 R--------------SSLVDMFFFNPYTRELINLPKCEL-AFQAIAFSSAPTSGTCVVLA 110

Query:   172 LSVYYSTRRIC-ISTCKPGERTW-TRHFFDGFYGD--LHG-LTYLRGVLYCSFCNNVLGA 226
             L  +  TR I  IS C PG   W T+ F      D  +H  L Y     YC     VL  
Sbjct:   111 LRPF--TRYIIRISICYPGATEWITQEFSCSLRFDPYMHSNLVYANDHFYCFSSGGVLVD 168

Query:   227 FRVSTNSWKIYPHNRIRPTSVYL------YYGLIE----SEHEGSLLSVYYDSHRLQWLV 276
             F V++ +      N  R    Y+      ++ L +    +E +G L  +Y  S  +  +V
Sbjct:   169 FDVASRTMSEQAWNEHR--CAYMRNDNAEWFNLPKRIYLAEQKGELFLMYTCSSEIP-MV 225

Query:   277 FRFDLIKENWVEVNR--LDDRALFLNPSSTSMKLAV 310
             ++  L+  NW E+N   LD   +F +  S+  +L V
Sbjct:   226 YK--LVSSNWEEINSTTLDGVTIFASMYSSETRLDV 259

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515103379 AT4G12382 "AT4G12382" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 41/150 (27%), Positives = 66/150 (44%)

Query:    12 KRSATKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPLKEINLQPWLFS 71
             K+    S+++LP  ++ +I  +L       + +R    CKSW    V ++ +   PWL  
Sbjct:     3 KKIMNPSFADLPSSLIEVIMSHLAL----KNNIRASAACKSWYEVGVSVRVVEKHPWLIC 58

Query:    72 CHSISHLF---DTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSS 128
                  +LF   D  H   YT+   P +  S +  S+ GW+L  KA              +
Sbjct:    59 FPKRGNLFEFRDPLHWKLYTLGL-PELAESTVCYSRFGWLLMRKA--------------T 103

Query:   129 PSSLFFYNPFSASIIELPPLHMFSSDKATF 158
                +FF+NPFS  II LP   + + +  TF
Sbjct:   104 SKDVFFFNPFSRDIISLPKCEL-AFEHITF 132

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2139064 AT4G12370 "AT4G12370" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 77/315 (24%), Positives = 126/315 (40%)

Query:    74 SISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLF 133
             ++  L+D  H+  YT+   P +  S +  S+DGW+L  K          IS       +F
Sbjct:     8 NLFELYDPLHQKMYTLNL-PELAKSTVCYSRDGWLLMRKT---------IS-----REMF 52

Query:   134 FYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTW 193
             F+NPF+  +I +P   + S D   FS APTS  C +     + S R    STC P    W
Sbjct:    53 FFNPFTRELINVPKCTL-SYDAIAFSCAPTSGTCVLLAFK-HVSYRITTTSTCHPKATEW 110

Query:   194 TRH---FFDGFYGDL--HG-LTYLRGVLYCSFCNNVLGAFRVSTNSWK-----IYPHNRI 242
                   F   F  +   H  + Y +   YC      L  F  S+  W      + P   I
Sbjct:   111 VTEDLQFHRRFRSETLNHSNVVYAKRRFYCLDGQGSLYYFDPSSRRWDFSYTYLLPCPYI 170

Query:   243 RPTSVYLYYG----LIESEHEGSLLSVYY-DSHRLQWLVFRFDLIKENWVEVNR--LDDR 295
                  Y Y      +  +  +G    ++  D  +   +V + + I  NW E+N   +D  
Sbjct:   171 SDRFSYQYERKKKRIFLAVRKGVFFKIFTCDGEKP--IVHKLEDI--NWEEINSTTIDGL 226

Query:   296 ALFLNPSSTSMKLAVDDASELANTIHVECSSSFYKKPEDERLDCPQSF---DWILEEN-- 350
              +F    S+ ++L   +   + N+++        K+     LD  + +    W  +E+  
Sbjct:   227 TIFTGLYSSEVRL---NLPWMRNSVYFPRLRFNVKRCVSYSLDEERYYPRKQWQEQEDLC 283

Query:   351 PETIVWIQPPLKRGD 365
             P   +WI+PP K  D
Sbjct:   284 PIENLWIRPPKKAVD 298

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504956069 AT2G44735 "AT2G44735" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 44/147 (29%), Positives = 62/147 (42%)

Query:   130 SSLFFYNPFSASIIELPPL-HMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKP 188
             +S    NPF+     LPP  H   S    FS APTS  C V   +   S   + I T +P
Sbjct:   105 ASTLVLNPFTRESFYLPPRRHEHRSRFLAFSAAPTSPSCMVISYTQLRSCGSVLIDTWRP 164

Query:   189 GERTWTRHFFDGF--YGDLHGLTYLRGVLYC-SFCNNVLGAFRVSTNSWKIYPHNRIRPT 245
             GE  WT H F+    +       +  G+ +C S C   LG F  S  +W I P   ++P 
Sbjct:   165 GETEWTTHCFENQLPFRYWSKCVFSNGMFFCLSECG-YLGVFDPSKATWNILP---VKPC 220

Query:   246 SV-------YLYYGLIESEHEGSLLSV 265
                      Y +  +  +EHEG +  +
Sbjct:   221 PAFYQFEFDYTHNPVFMTEHEGDIFDI 247

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	382
PLN03215	373	PLN03215, PLN03215, ascorbic acid mannose pathway	7e-04

>gnl|CDD|178754 PLN03215, PLN03215, ascorbic acid mannose pathway regulator 1; Provisional

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 3/38 (7%)

Query: 19 WSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQST 56
          WS LP +++++IA  L+   +     RFR+IC+SW+S+
Sbjct: 4  WSTLPEELLHMIAGRLFSNVELK---RFRSICRSWRSS 38

Length = 373

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	382
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	100.0
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.7
PF03478	54	DUF295: Protein of unknown function (DUF295); Inte	99.25
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.52
PHA02713	557	hypothetical protein; Provisional	98.48
PHA02790	480	Kelch-like protein; Provisional	98.28
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	98.26
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.26
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.12
PHA03098	534	kelch-like protein; Provisional	98.01
PHA02713	557	hypothetical protein; Provisional	97.95
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.93
PLN02153	341	epithiospecifier protein	97.88
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	97.74
PHA03098	534	kelch-like protein; Provisional	97.66
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.55
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	97.47
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	97.44
PLN02193	470	nitrile-specifier protein	97.42
PLN02153	341	epithiospecifier protein	97.41
PHA02790	480	Kelch-like protein; Provisional	97.39
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	97.32
PLN02193	470	nitrile-specifier protein	97.26
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	97.19
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.07
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	95.6
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	95.14
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.7
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	92.06
KOG1230	521	consensus Protein containing repeated kelch motifs	90.96
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	89.32
KOG1230	521	consensus Protein containing repeated kelch motifs	89.28
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	88.27
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	86.97
PF13964	50	Kelch_6: Kelch motif	86.14
KOG4693	392	consensus Uncharacterized conserved protein, conta	85.67
PF13964	50	Kelch_6: Kelch motif	84.97
KOG2502	355	consensus Tub family proteins [General function pr	83.85
KOG2997	366	consensus F-box protein FBX9 [General function pre	83.39
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	82.49
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	80.48

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=100.00  E-value=3.2e-42  Score=323.10  Aligned_cols=275  Identities=17%  Similarity=0.230  Sum_probs=193.0

Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhccccCC---CCCCCCCceeecC---C-ceeeeec--------
Q 041774           17 KSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPL---KEINLQPWLFSCH---S-ISHLFDT--------   81 (382)
Q Consensus        17 ~~Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~~~---~~~~~~Pwll~~p---~-~~~~~~~--------   81 (382)
                      ++|++||+|||+.|+.||   ++..|++|||+||++||+++.+.   .+.++.||++..|   . ...-.++        
T Consensus         2 ~~Ws~Lp~dll~~i~~~l---~~~~d~~~~~~vC~sWr~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRL---FSNVELKRFRSICRSWRSSVSGVGKKNPFRTRPLILFNPINPSETLTDDRSYISRPGAF   78 (373)
T ss_pred             CChhhCCHHHHHHHHhhC---CcHHHHHHHHhhhhhHHHhcccccccCCcccccccccCcccCCCCccccccccccccce
Confidence            589999999999999999   78899999999999999997643   2344558887543   1 0000000        


Q ss_pred             -CCCcEEEecCCCcCCCCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCccc--C------
Q 041774           82 -THKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMF--S------  152 (382)
Q Consensus        82 -~~~~~~~~~l~p~~~~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~--~------  152 (382)
                       +....+++.+ +       .++++|||+..++..+            .+.+.|+||+++..+.+|+....  .      
T Consensus        79 ls~~~~~r~~~-~-------~~~~~~WLik~~~~~~------------~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei  138 (373)
T PLN03215         79 LSRAAFFRVTL-S-------SSPSKGWLIKSDMDVN------------SGRFHLLNPLSRLPLRHSSESVDLLEFTVSEI  138 (373)
T ss_pred             eeeeEEEEeec-C-------CCCCCCcEEEEecccc------------CCccEecCccccCccCCCCccceeeeeEEEEc
Confidence             0001222221 1       1457999999876532            46889999999999998873210  0      


Q ss_pred             ---cce---------------EEE-cCCCCC-CCeEEEEEEEeeCCCeEEEEEEecCCCceEEeecCCcccccceEEEEC
Q 041774          153 ---SDK---------------ATF-STAPTS-LFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLR  212 (382)
Q Consensus       153 ---~~~---------------v~~-s~~p~s-~~~~v~~i~~~~~~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~  212 (382)
                         |..               +++ .-.+.. .+++|++|..  .+   .+++|+  +++|+.++.  ....+.|+|+|+
T Consensus       139 ~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~--~g---~l~~w~--~~~Wt~l~~--~~~~~~DIi~~k  209 (373)
T PLN03215        139 REAYQVLDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGR--DG---KINYWD--GNVLKALKQ--MGYHFSDIIVHK  209 (373)
T ss_pred             cceEEEEecccccccccceeEEEEEEeecCCCcceEEEEEee--cC---cEeeec--CCeeeEccC--CCceeeEEEEEC
Confidence               100               110 001111 1355666664  22   567787  699999953  335799999999


Q ss_pred             CEEEEEeeCCeEEEEEcCCCCeEEeccCCCCCCc--ceeeceeEEEEeCCcEEEEEEeCC--------------C-ceEE
Q 041774          213 GVLYCSFCNNVLGAFRVSTNSWKIYPHNRIRPTS--VYLYYGLIESEHEGSLLSVYYDSH--------------R-LQWL  275 (382)
Q Consensus       213 G~~Y~l~~~g~l~~~d~~~~~~~~~~~p~~~~~~--~~~~~~~~LVe~~G~LllV~~~~~--------------~-~~~~  275 (382)
                      |+||+++..|.++++|.+.+ ...+.. ......  .......||||++|+|+||.+...              . ..|+
T Consensus       210 GkfYAvD~~G~l~~i~~~l~-i~~v~~-~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~  287 (373)
T PLN03215        210 GQTYALDSIGIVYWINSDLE-FSRFGT-SLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFK  287 (373)
T ss_pred             CEEEEEcCCCeEEEEecCCc-eeeecc-eecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEE
Confidence            99999999999999985432 222211 111000  111145899999999999999531              1 2799


Q ss_pred             EEEEEcCCCCEEEcccCCCcEEEEcCCCeeeeeccCCCCcCCCeEEEccC
Q 041774          276 VFRFDLIKENWVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVECS  325 (382)
Q Consensus       276 V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~~~~~~g~~~N~IYf~d~  325 (382)
                      |||+|.+..+|+||++|||+|||+|.++++++++.+++|+++|||||+|+
T Consensus       288 VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd  337 (373)
T PLN03215        288 VYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTED  337 (373)
T ss_pred             EEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECC
Confidence            99999999999999999999999999999999999999999999999953

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.70  E-value=1.7e-15  Score=137.16  Aligned_cols=173  Identities=18%  Similarity=0.156  Sum_probs=123.7

Q ss_pred             EEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCccc----CcceEEEcCCCCCCCeEEEEEEEee
Q 041774          101 KASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMF----SSDKATFSTAPTSLFCTVFVLSVYY  176 (382)
Q Consensus       101 ~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~----~~~~v~~s~~p~s~~~~v~~i~~~~  176 (382)
                      +|||+|+|++...                ..++|+||.|++...||+.+..    .....+|+.+|.+.+|+|+.+.. .
T Consensus         1 ~~sCnGLlc~~~~----------------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~-~   63 (230)
T TIGR01640         1 VVPCDGLICFSYG----------------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSD-R   63 (230)
T ss_pred             CcccceEEEEecC----------------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEe-e
Confidence            3789999976643                3789999999999999875431    11246788888888999998865 2


Q ss_pred             C--CCeEEEEEEecCCCceEEeecCCcc-cccceEEEECCEEEEEeeCC------eEEEEEcCCCCeE-EeccCCCCCCc
Q 041774          177 S--TRRICISTCKPGERTWTRHFFDGFY-GDLHGLTYLRGVLYCSFCNN------VLGAFRVSTNSWK-IYPHNRIRPTS  246 (382)
Q Consensus       177 ~--~~~~~i~~~r~gd~~W~~~~~~~~~-~~~~d~v~~~G~~Y~l~~~g------~l~~~d~~~~~~~-~~~~p~~~~~~  246 (382)
                      .  .....+.+|..++++|+.+...... ......++.||.+|++...+      .|++||+..++|+ .++.|..... 
T Consensus        64 ~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~-  142 (230)
T TIGR01640        64 SGNRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSD-  142 (230)
T ss_pred             cCCCCCccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccc-
Confidence            1  1124667899999999998521111 12233889999999997432      6999999999999 4766532111 


Q ss_pred             ceeeceeEEEEeCCcEEEEEEeCCCceEEEEEEEc-CCCCEEEcccCC
Q 041774          247 VYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDL-IKENWVEVNRLD  293 (382)
Q Consensus       247 ~~~~~~~~LVe~~G~LllV~~~~~~~~~~V~~ld~-~~~~W~~v~~Lg  293 (382)
                        ......|++.+|.|.+|........++||.|++ +..+|.|.-++.
T Consensus       143 --~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~  188 (230)
T TIGR01640       143 --SVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVP  188 (230)
T ss_pred             --cccceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEc
Confidence              012457999999999998865323699999985 456799987775

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants

Probab=99.25  E-value=5.1e-12  Score=86.75  Aligned_cols=40  Identities=38%  Similarity=0.399  Sum_probs=38.2

Q ss_pred             EEEcccCCCcEEEEcCCCeeeeeccCCCCcCCCeEEEccC
Q 041774          286 WVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVECS  325 (382)
Q Consensus       286 W~~v~~Lg~~alFlg~~~s~~~~~~~~~g~~~N~IYf~d~  325 (382)
                      |++|++|||+|||||.++++++++.+++|+++|||||+++
T Consensus         1 W~~v~~lGd~alFlg~~~~~~~~a~~~~g~~~n~IYf~~~   40 (54)
T PF03478_consen    1 WVEVKSLGDRALFLGRNCSFSVSASDFPGLKGNCIYFLDD   40 (54)
T ss_pred             CcCccccCCEEEEEeCCccEEEECCCCCCccCCEEEEecC
Confidence            9999999999999999999999999999999999999943

The function of the proteins is unknown.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.52  E-value=3.8e-08  Score=65.45  Aligned_cols=36  Identities=31%  Similarity=0.564  Sum_probs=32.4

Q ss_pred             CCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774           19 WSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV   58 (382)
Q Consensus        19 Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~   58 (382)
                      |++||+|++..|+..|    +..|+++++.|||.|+.++.
T Consensus         1 i~~LP~Eil~~If~~L----~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYL----DPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-----HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHC
Confidence            7899999999999999    99999999999999999975

>PHA02713 hypothetical protein; Provisional

Probab=98.48  E-value=2.6e-05  Score=79.67  Aligned_cols=211  Identities=16%  Similarity=0.148  Sum_probs=129.5

Q ss_pred             eeeecCCCcEEEecCCCcCCCCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcc--
Q 041774           77 HLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSD--  154 (382)
Q Consensus        77 ~~~~~~~~~~~~~~l~p~~~~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~--  154 (382)
                      ..||+..++|..+...|........+..+|-|++..+...+.        .....+...||.+..+.++|+++.....  
T Consensus       275 ~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~--------~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~  346 (557)
T PHA02713        275 LVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNN--------PSLNKVYKINIENKIHVELPPMIKNRCRFS  346 (557)
T ss_pred             EEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCC--------CccceEEEEECCCCeEeeCCCCcchhhcee
Confidence            468999888887643233211122344577777765421000        0135688899999999999988654322  


Q ss_pred             eEEEcCCCCCCCeEEEEEEEeeCC--CeEEEEEEecCCCceEEeecCCcc--cccceEEEECCEEEEEeeC---------
Q 041774          155 KATFSTAPTSLFCTVFVLSVYYST--RRICISTCKPGERTWTRHFFDGFY--GDLHGLTYLRGVLYCSFCN---------  221 (382)
Q Consensus       155 ~v~~s~~p~s~~~~v~~i~~~~~~--~~~~i~~~r~gd~~W~~~~~~~~~--~~~~d~v~~~G~~Y~l~~~---------  221 (382)
                      .+++.      + ++.++.. .++  ....+..|.+..+.|+.+.  .++  .....++.++|++|++...         
T Consensus       347 ~~~~~------g-~IYviGG-~~~~~~~~sve~Ydp~~~~W~~~~--~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~  416 (557)
T PHA02713        347 LAVID------D-TIYAIGG-QNGTNVERTIECYTMGDDKWKMLP--DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSV  416 (557)
T ss_pred             EEEEC------C-EEEEECC-cCCCCCCceEEEEECCCCeEEECC--CCCcccccccEEEECCEEEEEeCCCcccccccc
Confidence            22231      1 2333332 111  1235678999999999873  332  2334567789999998621         


Q ss_pred             ---------------CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCc--eEEEEEEEcCC-
Q 041774          222 ---------------NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRL--QWLVFRFDLIK-  283 (382)
Q Consensus       222 ---------------g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~--~~~V~~ld~~~-  283 (382)
                                     ..+..||+..++|+.++..+. +.     ...-++..+|+|+++.......  .-.|.+.|.++ 
T Consensus       417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r-----~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~  490 (557)
T PHA02713        417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GT-----IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTY  490 (557)
T ss_pred             cccccccccccccccceEEEECCCCCeEeecCCCCc-cc-----ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCC
Confidence                           247889999999998753221 11     2334788899999997654221  23478889988 


Q ss_pred             CCEEEcccCCCcEEEEcCCCeeeeeccCCCCcCCCeEEEc
Q 041774          284 ENWVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVE  323 (382)
Q Consensus       284 ~~W~~v~~Lg~~alFlg~~~s~~~~~~~~~g~~~N~IYf~  323 (382)
                      .+|..+.+|.-.-.      ...+      ...+|+||.+
T Consensus       491 ~~W~~~~~m~~~r~------~~~~------~~~~~~iyv~  518 (557)
T PHA02713        491 NGWELITTTESRLS------ALHT------ILHDNTIMML  518 (557)
T ss_pred             CCeeEccccCcccc------ccee------EEECCEEEEE
Confidence            79999998864221      1111      1247799999

>PHA02790 Kelch-like protein; Provisional

Probab=98.28  E-value=0.00011  Score=73.87  Aligned_cols=185  Identities=10%  Similarity=-0.011  Sum_probs=113.5

Q ss_pred             eeeeecCCCcEEEecCCCcCCCC-eEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcc
Q 041774           76 SHLFDTTHKLKYTIKTDPRVLHS-KIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSD  154 (382)
Q Consensus        76 ~~~~~~~~~~~~~~~l~p~~~~~-~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~  154 (382)
                      +..|||..++|..+..-|. ++. ....+.+|.|.+..+..            ....+.-.||.+.++..+|+++.....
T Consensus       289 v~~Ydp~~~~W~~~~~m~~-~r~~~~~v~~~~~iYviGG~~------------~~~sve~ydp~~n~W~~~~~l~~~r~~  355 (480)
T PHA02790        289 AIAVNYISNNWIPIPPMNS-PRLYASGVPANNKLYVVGGLP------------NPTSVERWFHGDAAWVNMPSLLKPRCN  355 (480)
T ss_pred             EEEEECCCCEEEECCCCCc-hhhcceEEEECCEEEEECCcC------------CCCceEEEECCCCeEEECCCCCCCCcc
Confidence            3468999888876643122 221 12234588888775531            123456779999999999988754332


Q ss_pred             --eEEEcCCCCCCCeEEEEEEEeeCCCeEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEeeCCeEEEEEcCCC
Q 041774          155 --KATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTN  232 (382)
Q Consensus       155 --~v~~s~~p~s~~~~v~~i~~~~~~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~g~l~~~d~~~~  232 (382)
                        .+++.      + .+.++.. ..+....+..|.+.++.|+.+.....+.....++.++|++|++.  |....||+..+
T Consensus       356 ~~~~~~~------g-~IYviGG-~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~  425 (480)
T PHA02790        356 PAVASIN------N-VIYVIGG-HSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESSN  425 (480)
T ss_pred             cEEEEEC------C-EEEEecC-cCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCCC
Confidence              22221      1 2333332 11111245678999999998732222233445678999999986  56778999999


Q ss_pred             CeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCc-eEEEEEEEcCCCCEEEc
Q 041774          233 SWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRL-QWLVFRFDLIKENWVEV  289 (382)
Q Consensus       233 ~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~-~~~V~~ld~~~~~W~~v  289 (382)
                      +|+.++..+ .+.     ...-++..+|+|+++....... .-.|...|.++.+|.-+
T Consensus       426 ~W~~~~~m~-~~r-----~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        426 TWTLIDDPI-YPR-----DNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             cEeEcCCCC-CCc-----cccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence            999886322 111     2334677899999998754221 23456678888999654

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=98.26  E-value=9.1e-06  Score=66.51  Aligned_cols=80  Identities=19%  Similarity=0.221  Sum_probs=62.2

Q ss_pred             EEECCEEEEEeeC-----CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC--ceEEEEEEEc
Q 041774          209 TYLRGVLYCSFCN-----NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR--LQWLVFRFDL  281 (382)
Q Consensus       209 v~~~G~~Y~l~~~-----g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~--~~~~V~~ld~  281 (382)
                      ++.||.+|+++..     ..|++||+..++|+.+..|....   .......|++.+|+|.+|......  ..++||.|+.
T Consensus         2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~---~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD   78 (129)
T PF08268_consen    2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPY---SSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED   78 (129)
T ss_pred             EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeec---cccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence            6789999999754     57999999999999998761110   112567899999999999887643  3699999976


Q ss_pred             -CCCCEEEccc
Q 041774          282 -IKENWVEVNR  291 (382)
Q Consensus       282 -~~~~W~~v~~  291 (382)
                       ++.+|.|...
T Consensus        79 ~~k~~Wsk~~~   89 (129)
T PF08268_consen   79 YEKQEWSKKHI   89 (129)
T ss_pred             cccceEEEEEE
Confidence             5689998754

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.26  E-value=1.5e-07  Score=62.80  Aligned_cols=38  Identities=32%  Similarity=0.515  Sum_probs=32.3

Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhccccC
Q 041774           18 SWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVP   59 (382)
Q Consensus        18 ~Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~~   59 (382)
                      .|++||.|++.+|+.+|    +..|+++++.|||+|++++..
T Consensus         2 ~~~~LP~~il~~Il~~l----~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYL----DPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-----HHHHHHHCTT-HHHHHHHTT
T ss_pred             CHHHCCHHHHHHHHHHC----cHHHHHHHHHHhhHHHHHHcC
Confidence            47789999999999999    999999999999999998763

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.12  E-value=1e-06  Score=56.50  Aligned_cols=33  Identities=30%  Similarity=0.564  Sum_probs=31.5

Q ss_pred             CCHHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774           22 LPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV   58 (382)
Q Consensus        22 LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~   58 (382)
                      ||+|++..|+.+|    +..|+.+++.|||+||.++.
T Consensus         1 lP~~ll~~I~~~l----~~~d~~~~~~vc~~~~~~~~   33 (41)
T smart00256        1 LPDEILEEILSKL----PPKDLLRLRKVSRRWRSLID   33 (41)
T ss_pred             CCHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhc
Confidence            7999999999999    89999999999999999976

>PHA03098 kelch-like protein; Provisional

Probab=98.01  E-value=0.00087  Score=68.35  Aligned_cols=197  Identities=12%  Similarity=0.066  Sum_probs=115.5

Q ss_pred             eeeeecCCCcEEEecCCCcC-CCCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcc
Q 041774           76 SHLFDTTHKLKYTIKTDPRV-LHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSD  154 (382)
Q Consensus        76 ~~~~~~~~~~~~~~~l~p~~-~~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~  154 (382)
                      ...||+.+++|..+.-.|.. ..+. ..+.+|-|++..+..++.         ....+..+||.|+++..+|+++.....
T Consensus       313 v~~yd~~~~~W~~~~~~~~~R~~~~-~~~~~~~lyv~GG~~~~~---------~~~~v~~yd~~~~~W~~~~~lp~~r~~  382 (534)
T PHA03098        313 VVSYDTKTKSWNKVPELIYPRKNPG-VTVFNNRIYVIGGIYNSI---------SLNTVESWKPGESKWREEPPLIFPRYN  382 (534)
T ss_pred             EEEEeCCCCeeeECCCCCcccccce-EEEECCEEEEEeCCCCCE---------ecceEEEEcCCCCceeeCCCcCcCCcc
Confidence            34688888888655321211 1122 233467777665431110         135678899999999998887654332


Q ss_pred             eEEEcCCCCCCCeEEEEEEE-eeCC-CeEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEeeC---------Ce
Q 041774          155 KATFSTAPTSLFCTVFVLSV-YYST-RRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCN---------NV  223 (382)
Q Consensus       155 ~v~~s~~p~s~~~~v~~i~~-~~~~-~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~---------g~  223 (382)
                      ..+...    .+ .+.++.. ...+ ....+..|.+.+++|+.+.....+.....++.++|++|++...         ..
T Consensus       383 ~~~~~~----~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  457 (534)
T PHA03098        383 PCVVNV----NN-LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNI  457 (534)
T ss_pred             ceEEEE----CC-EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccce
Confidence            221111    12 2233221 0011 1134678899999999874211122334567889999998621         23


Q ss_pred             EEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCc-eEEEEEEEcCCCCEEEcccCC
Q 041774          224 LGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRL-QWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       224 l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~-~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      +..||+..++|..++..+. +.     ....++..+|+|+++....... .-.|+..|.++.+|..+..+.
T Consensus       458 v~~yd~~~~~W~~~~~~~~-~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  522 (534)
T PHA03098        458 VESYNPVTNKWTELSSLNF-PR-----INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP  522 (534)
T ss_pred             EEEecCCCCceeeCCCCCc-cc-----ccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCc
Confidence            8899999999998863221 11     1223556689999887654321 235677888899999887754

>PHA02713 hypothetical protein; Provisional

Probab=97.95  E-value=0.00088  Score=68.54  Aligned_cols=188  Identities=11%  Similarity=0.134  Sum_probs=114.8

Q ss_pred             eeeecCCCcEEEecCCCcCCCC-eEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCc--
Q 041774           77 HLFDTTHKLKYTIKTDPRVLHS-KIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSS--  153 (382)
Q Consensus        77 ~~~~~~~~~~~~~~l~p~~~~~-~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~--  153 (382)
                      ..|||..+.|..+..-|. ++. ...++.+|-|....+. +|..        ....+..+||.|.++..+|+++....  
T Consensus       323 ~~Yd~~~n~W~~~~~m~~-~R~~~~~~~~~g~IYviGG~-~~~~--------~~~sve~Ydp~~~~W~~~~~mp~~r~~~  392 (557)
T PHA02713        323 YKINIENKIHVELPPMIK-NRCRFSLAVIDDTIYAIGGQ-NGTN--------VERTIECYTMGDDKWKMLPDMPIALSSY  392 (557)
T ss_pred             EEEECCCCeEeeCCCCcc-hhhceeEEEECCEEEEECCc-CCCC--------CCceEEEEECCCCeEEECCCCCcccccc
Confidence            357887777755432121 221 2234457877776543 1111        12467889999999999998765432  


Q ss_pred             ceEEEcCCCCCCCeEEEEEEEeeCC--------------------CeEEEEEEecCCCceEEeecCCcc--cccceEEEE
Q 041774          154 DKATFSTAPTSLFCTVFVLSVYYST--------------------RRICISTCKPGERTWTRHFFDGFY--GDLHGLTYL  211 (382)
Q Consensus       154 ~~v~~s~~p~s~~~~v~~i~~~~~~--------------------~~~~i~~~r~gd~~W~~~~~~~~~--~~~~d~v~~  211 (382)
                      ..+++.      + ++.++.. .++                    ....+..|.+..+.|+.+  +.++  .....++.+
T Consensus       393 ~~~~~~------g-~IYviGG-~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v--~~m~~~r~~~~~~~~  462 (557)
T PHA02713        393 GMCVLD------Q-YIYIIGG-RTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL--PNFWTGTIRPGVVSH  462 (557)
T ss_pred             cEEEEC------C-EEEEEeC-CCcccccccccccccccccccccccceEEEECCCCCeEeec--CCCCcccccCcEEEE
Confidence            222221      1 1222221 010                    013467899999999987  3332  234457899


Q ss_pred             CCEEEEEeeC-------CeEEEEEcCC-CCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCceEEEEEEEcCC
Q 041774          212 RGVLYCSFCN-------NVLGAFRVST-NSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIK  283 (382)
Q Consensus       212 ~G~~Y~l~~~-------g~l~~~d~~~-~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~~~~V~~ld~~~  283 (382)
                      +|++|++...       ..+..||+.. ++|+.++.-+. +     ....-++..+|+|+++..+.+.  ..|-..|..+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-~-----r~~~~~~~~~~~iyv~Gg~~~~--~~~e~yd~~~  534 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-R-----LSALHTILHDNTIMMLHCYESY--MLQDTFNVYT  534 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-c-----cccceeEEECCEEEEEeeecce--eehhhcCccc
Confidence            9999999631       1357899998 79998763221 1     1244577889999999876542  2445667788


Q ss_pred             CCEEEcccC
Q 041774          284 ENWVEVNRL  292 (382)
Q Consensus       284 ~~W~~v~~L  292 (382)
                      .+|..+.+-
T Consensus       535 ~~W~~~~~~  543 (557)
T PHA02713        535 YEWNHICHQ  543 (557)
T ss_pred             ccccchhhh
Confidence            999988654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.93  E-value=0.0011  Score=67.83  Aligned_cols=196  Identities=17%  Similarity=0.169  Sum_probs=124.0

Q ss_pred             ceeeeecCCCcEEEecCCCcCCCCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCc-
Q 041774           75 ISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSS-  153 (382)
Q Consensus        75 ~~~~~~~~~~~~~~~~l~p~~~~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~-  153 (382)
                      ....||+.++.|..+.--|.-.....+++-+|-|+.+.+...|+.        ..+.+...||.+.++..+|++...+. 
T Consensus       302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~--------~l~~ve~YD~~~~~W~~~a~M~~~R~~  373 (571)
T KOG4441|consen  302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSD--------RLSSVERYDPRTNQWTPVAPMNTKRSD  373 (571)
T ss_pred             eeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCc--------ccceEEEecCCCCceeccCCccCcccc
Confidence            345789988877655321322122233455787777654321221        23678899999999999999875432 


Q ss_pred             -ceEEEcCCCCCCCeEEEEEEE-eeCCCeEEEEEEecCCCceEEeecCCcc--cccceEEEECCEEEEEee----C---C
Q 041774          154 -DKATFSTAPTSLFCTVFVLSV-YYSTRRICISTCKPGERTWTRHFFDGFY--GDLHGLTYLRGVLYCSFC----N---N  222 (382)
Q Consensus       154 -~~v~~s~~p~s~~~~v~~i~~-~~~~~~~~i~~~r~gd~~W~~~~~~~~~--~~~~d~v~~~G~~Y~l~~----~---g  222 (382)
                       ..+++.       -.+.++.. ........+..|.+..+.|+.+.  .+.  .....++.++|++|++..    .   .
T Consensus       374 ~~v~~l~-------g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~  444 (571)
T KOG4441|consen  374 FGVAVLD-------GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLN  444 (571)
T ss_pred             ceeEEEC-------CEEEEEeccccccccccEEEecCCCCcccccC--CCCcceeeeEEEEECCEEEEEcCcCCCccccc
Confidence             223331       12333332 01122345778999999999873  232  234457789999999862    1   3


Q ss_pred             eEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC-ceEEEEEEEcCCCCEEEcccCC
Q 041774          223 VLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR-LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       223 ~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      .+..||+..++|+.++.-....      ...-++..+|.|+.|..+... ..-.|-+.|.++.+|..+..+.
T Consensus       445 sve~YDP~t~~W~~~~~M~~~R------~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~  510 (571)
T KOG4441|consen  445 SVECYDPETNTWTLIAPMNTRR------SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT  510 (571)
T ss_pred             eEEEEcCCCCceeecCCccccc------ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence            5788999999999886321110      122367789999999887642 1334788999999999997664

>PLN02153 epithiospecifier protein

Probab=97.88  E-value=0.0068  Score=58.08  Aligned_cols=199  Identities=12%  Similarity=0.106  Sum_probs=110.5

Q ss_pred             eeeeecCCCcEEEecCC---CcCCC-CeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCc--
Q 041774           76 SHLFDTTHKLKYTIKTD---PRVLH-SKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLH--  149 (382)
Q Consensus        76 ~~~~~~~~~~~~~~~l~---p~~~~-~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~--  149 (382)
                      ...||+...+|..+...   |.... ...+.+.++-|++......+         .....++.+||.|.++..++++.  
T Consensus        52 ~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~---------~~~~~v~~yd~~t~~W~~~~~~~~~  122 (341)
T PLN02153         52 LYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEK---------REFSDFYSYDTVKNEWTFLTKLDEE  122 (341)
T ss_pred             EEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCC---------CccCcEEEEECCCCEEEEeccCCCC
Confidence            34688888888765321   22111 11123346666666432111         01257889999999998887652  


Q ss_pred             ---ccCcc-eEEEcCCCCCCCeEEEEEEE-eeCC------CeEEEEEEecCCCceEEeecCC---cccccceEEEECCEE
Q 041774          150 ---MFSSD-KATFSTAPTSLFCTVFVLSV-YYST------RRICISTCKPGERTWTRHFFDG---FYGDLHGLTYLRGVL  215 (382)
Q Consensus       150 ---~~~~~-~v~~s~~p~s~~~~v~~i~~-~~~~------~~~~i~~~r~gd~~W~~~~~~~---~~~~~~d~v~~~G~~  215 (382)
                         ..... .++..     .+ ++.++.. ...+      ....+..|.+.++.|+.+....   .+.....++.++|++
T Consensus       123 ~~p~~R~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~i  196 (341)
T PLN02153        123 GGPEARTFHSMASD-----EN-HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKI  196 (341)
T ss_pred             CCCCCceeeEEEEE-----CC-EEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeE
Confidence               11111 11110     11 2222221 0000      1124677999999999874321   112223467789999


Q ss_pred             EEEee--------------CCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCC----------C
Q 041774          216 YCSFC--------------NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSH----------R  271 (382)
Q Consensus       216 Y~l~~--------------~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~----------~  271 (382)
                      |++..              ...+.+||+...+|..+......|..   ....-.+..+|+|+++.-...          .
T Consensus       197 yv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  273 (341)
T PLN02153        197 WVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA---RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGT  273 (341)
T ss_pred             EEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC---cceeeeEEECCEEEEECcccCCcccccccccc
Confidence            99741              24688999999999987531001110   012234556788888876421          1


Q ss_pred             ceEEEEEEEcCCCCEEEcccC
Q 041774          272 LQWLVFRFDLIKENWVEVNRL  292 (382)
Q Consensus       272 ~~~~V~~ld~~~~~W~~v~~L  292 (382)
                      ..-.||.+|.++.+|.++...
T Consensus       274 ~~n~v~~~d~~~~~W~~~~~~  294 (341)
T PLN02153        274 LSNEGYALDTETLVWEKLGEC  294 (341)
T ss_pred             ccccEEEEEcCccEEEeccCC
Confidence            123799999999999998754

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=97.74  E-value=0.00097  Score=56.88  Aligned_cols=81  Identities=15%  Similarity=0.190  Sum_probs=56.3

Q ss_pred             EEECCEEEEEeeC--C----eEEEEEcCCCCe-EEeccCCCCCCcceeeceeEE-EEeCCcEEEEEEeCCCceEEEEEEE
Q 041774          209 TYLRGVLYCSFCN--N----VLGAFRVSTNSW-KIYPHNRIRPTSVYLYYGLIE-SEHEGSLLSVYYDSHRLQWLVFRFD  280 (382)
Q Consensus       209 v~~~G~~Y~l~~~--g----~l~~~d~~~~~~-~~~~~p~~~~~~~~~~~~~~L-Ve~~G~LllV~~~~~~~~~~V~~ld  280 (382)
                      |+.||.+|+++..  +    .|++||+..+++ +.++.|.....   ......| +..+|.|.++........++||.|+
T Consensus         2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~---~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~   78 (164)
T PF07734_consen    2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDD---DDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK   78 (164)
T ss_pred             EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCc---cCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence            7899999999732  2    599999999999 77776543221   1133455 4457788888654433369999999


Q ss_pred             c---CCCCEEEcccC
Q 041774          281 L---IKENWVEVNRL  292 (382)
Q Consensus       281 ~---~~~~W~~v~~L  292 (382)
                      +   ...+|.|+-++
T Consensus        79 ~~~~~~~SWtK~~~i   93 (164)
T PF07734_consen   79 KYGYGKESWTKLFTI   93 (164)
T ss_pred             eeccCcceEEEEEEE
Confidence            5   26789997543

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PHA03098 kelch-like protein; Provisional

Probab=97.66  E-value=0.0039  Score=63.60  Aligned_cols=150  Identities=19%  Similarity=0.249  Sum_probs=95.3

Q ss_pred             ceEEEEcCCCCceeeCCCCcccCc--ceEEEcCCCCCCCeEEEEEEEeeC--CCeEEEEEEecCCCceEEeecCCccccc
Q 041774          130 SSLFFYNPFSASIIELPPLHMFSS--DKATFSTAPTSLFCTVFVLSVYYS--TRRICISTCKPGERTWTRHFFDGFYGDL  205 (382)
Q Consensus       130 ~~~~l~NP~T~~~i~LP~~~~~~~--~~v~~s~~p~s~~~~v~~i~~~~~--~~~~~i~~~r~gd~~W~~~~~~~~~~~~  205 (382)
                      ..++.+||.|+++..+|+++....  ..+++.      +. +.++.. ..  .....+..|.+.++.|+....-..+...
T Consensus       311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~------~~-lyv~GG-~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~  382 (534)
T PHA03098        311 NSVVSYDTKTKSWNKVPELIYPRKNPGVTVFN------NR-IYVIGG-IYNSISLNTVESWKPGESKWREEPPLIFPRYN  382 (534)
T ss_pred             ccEEEEeCCCCeeeECCCCCcccccceEEEEC------CE-EEEEeC-CCCCEecceEEEEcCCCCceeeCCCcCcCCcc
Confidence            478899999999999998764322  222221      22 333332 11  1113466789999999986321122233


Q ss_pred             ceEEEECCEEEEEeeC-------CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC----ceE
Q 041774          206 HGLTYLRGVLYCSFCN-------NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR----LQW  274 (382)
Q Consensus       206 ~d~v~~~G~~Y~l~~~-------g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~----~~~  274 (382)
                      ..++..+|++|++...       ..+..||+..++|+.++..|.. .     .....+..+|.|+++......    ..-
T Consensus       383 ~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~  456 (534)
T PHA03098        383 PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS-H-----YGGCAIYHDGKIYVIGGISYIDNIKVYN  456 (534)
T ss_pred             ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc-c-----cCceEEEECCEEEEECCccCCCCCcccc
Confidence            4456789999998631       3588999999999987643321 1     122356678999888764321    112


Q ss_pred             EEEEEEcCCCCEEEcccCC
Q 041774          275 LVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       275 ~V~~ld~~~~~W~~v~~Lg  293 (382)
                      .|+..|.++.+|.++..+.
T Consensus       457 ~v~~yd~~~~~W~~~~~~~  475 (534)
T PHA03098        457 IVESYNPVTNKWTELSSLN  475 (534)
T ss_pred             eEEEecCCCCceeeCCCCC
Confidence            3888899999999998765

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.55  E-value=0.0084  Score=61.44  Aligned_cols=188  Identities=17%  Similarity=0.195  Sum_probs=118.3

Q ss_pred             eeeeecCCCcEEEecCCCcC--CCCeE-EEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccC
Q 041774           76 SHLFDTTHKLKYTIKTDPRV--LHSKI-KASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFS  152 (382)
Q Consensus        76 ~~~~~~~~~~~~~~~l~p~~--~~~~~-~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~  152 (382)
                      ...|||..++|..+   |.+  .+..+ +++.+|-|..+.+. +|..        .-..+--.+|.|.++-..+++....
T Consensus       351 ve~YD~~~~~W~~~---a~M~~~R~~~~v~~l~g~iYavGG~-dg~~--------~l~svE~YDp~~~~W~~va~m~~~r  418 (571)
T KOG4441|consen  351 VERYDPRTNQWTPV---APMNTKRSDFGVAVLDGKLYAVGGF-DGEK--------SLNSVECYDPVTNKWTPVAPMLTRR  418 (571)
T ss_pred             EEEecCCCCceecc---CCccCccccceeEEECCEEEEEecc-cccc--------ccccEEEecCCCCcccccCCCCcce
Confidence            34678887777653   222  22211 35568877777543 2221        1246778899999998888775433


Q ss_pred             cc--eEEEcCCCCCCCeEEEEEEE-eeCC-CeEEEEEEecCCCceEEeecCCcc--cccceEEEECCEEEEEee-CC---
Q 041774          153 SD--KATFSTAPTSLFCTVFVLSV-YYST-RRICISTCKPGERTWTRHFFDGFY--GDLHGLTYLRGVLYCSFC-NN---  222 (382)
Q Consensus       153 ~~--~v~~s~~p~s~~~~v~~i~~-~~~~-~~~~i~~~r~gd~~W~~~~~~~~~--~~~~d~v~~~G~~Y~l~~-~g---  222 (382)
                      +.  .+++.      + ++.++.. .... ....+..|.|..+.|+.+  +.|.  ....-++..||++|++.. +|   
T Consensus       419 ~~~gv~~~~------g-~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~--~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~  489 (571)
T KOG4441|consen  419 SGHGVAVLG------G-KLYIIGGGDGSSNCLNSVECYDPETNTWTLI--APMNTRRSGFGVAVLNGKIYVVGGFDGTSA  489 (571)
T ss_pred             eeeEEEEEC------C-EEEEEcCcCCCccccceEEEEcCCCCceeec--CCcccccccceEEEECCEEEEECCccCCCc
Confidence            32  22231      1 1222221 0111 124567899999999987  4443  344558899999999963 22   


Q ss_pred             --eEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC---ceEEEEEEEcCCCCEEEcccC
Q 041774          223 --VLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR---LQWLVFRFDLIKENWVEVNRL  292 (382)
Q Consensus       223 --~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~---~~~~V~~ld~~~~~W~~v~~L  292 (382)
                        .+-+||+..++|..+.... .+.     ....++..+|+|++|..+...   ..+++|  |.+..+|.++..+
T Consensus       490 ~~~VE~ydp~~~~W~~v~~m~-~~r-----s~~g~~~~~~~ly~vGG~~~~~~l~~ve~y--dp~~d~W~~~~~~  556 (571)
T KOG4441|consen  490 LSSVERYDPETNQWTMVAPMT-SPR-----SAVGVVVLGGKLYAVGGFDGNNNLNTVECY--DPETDTWTEVTEP  556 (571)
T ss_pred             cceEEEEcCCCCceeEcccCc-ccc-----ccccEEEECCEEEEEecccCccccceeEEc--CCCCCceeeCCCc
Confidence              3778999999999885321 111     344578889999999986642   267776  8899999998763

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=97.47  E-value=0.019  Score=54.58  Aligned_cols=107  Identities=15%  Similarity=0.105  Sum_probs=68.7

Q ss_pred             EEEEEecCCCceE--EeecCCccc--ccceEEEECCEEEEEee------CCeEEEEEcCCCCeEEeccCCCCCCcceeec
Q 041774          182 CISTCKPGERTWT--RHFFDGFYG--DLHGLTYLRGVLYCSFC------NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYY  251 (382)
Q Consensus       182 ~i~~~r~gd~~W~--~~~~~~~~~--~~~d~v~~~G~~Y~l~~------~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~  251 (382)
                      .+..+...++.|+  +...+.++.  ....++.++|++|++..      ...+.+||+..++|+.++..+..+.     .
T Consensus        89 ~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r-----~  163 (323)
T TIGR03548        89 SVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR-----V  163 (323)
T ss_pred             eEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC-----C
Confidence            4555666677772  112233332  23456778999999863      2368999999999998853121111     2


Q ss_pred             eeEEEEeCCcEEEEEEeCCCceEEEEEEEcCCCCEEEcccCC
Q 041774          252 GLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       252 ~~~LVe~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      ....+..+|+|+++.-........+++.|.++.+|.++..+.
T Consensus       164 ~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~  205 (323)
T TIGR03548       164 QPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPT  205 (323)
T ss_pred             cceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCC
Confidence            234567789999887654322345678899999999998763

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=97.44  E-value=0.06  Score=51.14  Aligned_cols=157  Identities=11%  Similarity=0.020  Sum_probs=89.2

Q ss_pred             ceEEEEcCCCCce----eeCCCCcccCcc--eEEEcCCCCCCCeEEEEEEEeeC-CCeEEEEEEecCCCceEEee-cCCc
Q 041774          130 SSLFFYNPFSASI----IELPPLHMFSSD--KATFSTAPTSLFCTVFVLSVYYS-TRRICISTCKPGERTWTRHF-FDGF  201 (382)
Q Consensus       130 ~~~~l~NP~T~~~----i~LP~~~~~~~~--~v~~s~~p~s~~~~v~~i~~~~~-~~~~~i~~~r~gd~~W~~~~-~~~~  201 (382)
                      ..+..+|+.+.++    ..+|+++.....  .+++.      + ++.++..... .....+..|.+.++.|+.+. .+..
T Consensus        88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~------~-~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~  160 (323)
T TIGR03548        88 SSVYRITLDESKEELICETIGNLPFTFENGSACYKD------G-TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE  160 (323)
T ss_pred             eeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC------C-EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC
Confidence            5778889988875    667777543221  22221      1 2333322001 11235677889999999874 2211


Q ss_pred             ccccceEEEECCEEEEEeeC-----CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC-----
Q 041774          202 YGDLHGLTYLRGVLYCSFCN-----NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR-----  271 (382)
Q Consensus       202 ~~~~~d~v~~~G~~Y~l~~~-----g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~-----  271 (382)
                      .....-++.++|++|++...     ..+.+||+..++|+.++..+....-........++..+|+|+++.-....     
T Consensus       161 ~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~  240 (323)
T TIGR03548       161 PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDA  240 (323)
T ss_pred             CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHH
Confidence            12233456789999999631     24678999999999886321100000000122244456788877654310     


Q ss_pred             ----------------------------ceEEEEEEEcCCCCEEEcccCC
Q 041774          272 ----------------------------LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       272 ----------------------------~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                                                  ..-.|+..|..+.+|.++..+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p  290 (323)
T TIGR03548       241 VIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP  290 (323)
T ss_pred             HhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc
Confidence                                        0125888888889999988664

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02193 nitrile-specifier protein

Probab=97.42  E-value=0.053  Score=54.41  Aligned_cols=202  Identities=11%  Similarity=0.132  Sum_probs=112.7

Q ss_pred             eeeeecCCCcEEEecCC---CcCCC-CeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCc--
Q 041774           76 SHLFDTTHKLKYTIKTD---PRVLH-SKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLH--  149 (382)
Q Consensus        76 ~~~~~~~~~~~~~~~l~---p~~~~-~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~--  149 (382)
                      ...||+.+.+|..+...   |.... .......++-|++..... +.        ...+.++.+||.|.++..++++.  
T Consensus       195 v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~-~~--------~~~ndv~~yD~~t~~W~~l~~~~~~  265 (470)
T PLN02193        195 LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRD-AS--------RQYNGFYSFDTTTNEWKLLTPVEEG  265 (470)
T ss_pred             EEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCC-CC--------CCCccEEEEECCCCEEEEcCcCCCC
Confidence            34688888887755321   22111 111233466666654321 10        11367889999999998887652  


Q ss_pred             -ccCcceEEEcCCCCCCCeEEEEEEE-eeCCCeEEEEEEecCCCceEEeecCC-c--ccccceEEEECCEEEEEee----
Q 041774          150 -MFSSDKATFSTAPTSLFCTVFVLSV-YYSTRRICISTCKPGERTWTRHFFDG-F--YGDLHGLTYLRGVLYCSFC----  220 (382)
Q Consensus       150 -~~~~~~v~~s~~p~s~~~~v~~i~~-~~~~~~~~i~~~r~gd~~W~~~~~~~-~--~~~~~d~v~~~G~~Y~l~~----  220 (382)
                       ..+....+...    .+ ++.++.. ........+..|.+.+++|+.+..+. .  +.....++.++|++|++..    
T Consensus       266 P~~R~~h~~~~~----~~-~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~  340 (470)
T PLN02193        266 PTPRSFHSMAAD----EE-NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC  340 (470)
T ss_pred             CCCccceEEEEE----CC-EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC
Confidence             11111111100    11 2222221 00111234667888999999875321 1  1223346678999999852    


Q ss_pred             -CCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCC----------CceEEEEEEEcCCCCEEEc
Q 041774          221 -NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSH----------RLQWLVFRFDLIKENWVEV  289 (382)
Q Consensus       221 -~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~----------~~~~~V~~ld~~~~~W~~v  289 (382)
                       ...+.+||+...+|+.++.....|.-   ....-.+..+++|+++.-...          ...-.+|.+|..+.+|.++
T Consensus       341 ~~~dv~~yD~~t~~W~~~~~~g~~P~~---R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~  417 (470)
T PLN02193        341 EVDDVHYYDPVQDKWTQVETFGVRPSE---RSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL  417 (470)
T ss_pred             ccCceEEEECCCCEEEEeccCCCCCCC---cceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence             24689999999999987531001100   012234556788888866431          0122589999999999999


Q ss_pred             ccCCC
Q 041774          290 NRLDD  294 (382)
Q Consensus       290 ~~Lg~  294 (382)
                      ..++.
T Consensus       418 ~~~~~  422 (470)
T PLN02193        418 DKFGE  422 (470)
T ss_pred             ccCCC
Confidence            87764

>PLN02153 epithiospecifier protein

Probab=97.41  E-value=0.023  Score=54.47  Aligned_cols=154  Identities=12%  Similarity=0.074  Sum_probs=92.0

Q ss_pred             ceEEEEcCCCCceeeCCCCcc-cCc-----ceEEEcCCCCCCCeEEEEEEE-eeCCCeEEEEEEecCCCceEEeecC---
Q 041774          130 SSLFFYNPFSASIIELPPLHM-FSS-----DKATFSTAPTSLFCTVFVLSV-YYSTRRICISTCKPGERTWTRHFFD---  199 (382)
Q Consensus       130 ~~~~l~NP~T~~~i~LP~~~~-~~~-----~~v~~s~~p~s~~~~v~~i~~-~~~~~~~~i~~~r~gd~~W~~~~~~---  199 (382)
                      +.++.+|+.+.++..+|+... ...     ..+++.      + ++.++.. .....+..+..|.+..+.|+.+...   
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~------~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~  122 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG------T-KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEE  122 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC------C-EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCC
Confidence            578899999999988876532 111     112221      1 2333322 0111123567888999999987421   


Q ss_pred             --CcccccceEEEECCEEEEEeeC------------CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEE
Q 041774          200 --GFYGDLHGLTYLRGVLYCSFCN------------NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSV  265 (382)
Q Consensus       200 --~~~~~~~d~v~~~G~~Y~l~~~------------g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV  265 (382)
                        ..+.....++..+|++|++...            ..+.+||+..++|+.++.+...+..   ....-++..+|+|+++
T Consensus       123 ~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~---r~~~~~~~~~~~iyv~  199 (341)
T PLN02153        123 GGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEK---RGGAGFAVVQGKIWVV  199 (341)
T ss_pred             CCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCC---CCcceEEEECCeEEEE
Confidence              1112334567789999998521            2478899999999987643111100   0122356678999888


Q ss_pred             EEeCC--------C-ceEEEEEEEcCCCCEEEcccCC
Q 041774          266 YYDSH--------R-LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       266 ~~~~~--------~-~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      .-...        . ..-.|+.+|.++.+|+++...|
T Consensus       200 GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g  236 (341)
T PLN02153        200 YGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG  236 (341)
T ss_pred             eccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence            64321        1 1235778888999999998665

>PHA02790 Kelch-like protein; Provisional

Probab=97.39  E-value=0.011  Score=59.44  Aligned_cols=158  Identities=11%  Similarity=0.141  Sum_probs=98.8

Q ss_pred             ceEEEEcCCCCceeeCCCCcccCc--ceEEEcCCCCCCCeEEEEEEEeeCCCeEEEEEEecCCCceEEeecCCcc--ccc
Q 041774          130 SSLFFYNPFSASIIELPPLHMFSS--DKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFY--GDL  205 (382)
Q Consensus       130 ~~~~l~NP~T~~~i~LP~~~~~~~--~~v~~s~~p~s~~~~v~~i~~~~~~~~~~i~~~r~gd~~W~~~~~~~~~--~~~  205 (382)
                      ..+...||.++++..+|+++....  ..+++.      + .+.++.. ..+ ...+..|.+..+.|+.+  +.++  ...
T Consensus       287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~------~-~iYviGG-~~~-~~sve~ydp~~n~W~~~--~~l~~~r~~  355 (480)
T PHA02790        287 NNAIAVNYISNNWIPIPPMNSPRLYASGVPAN------N-KLYVVGG-LPN-PTSVERWFHGDAAWVNM--PSLLKPRCN  355 (480)
T ss_pred             CeEEEEECCCCEEEECCCCCchhhcceEEEEC------C-EEEEECC-cCC-CCceEEEECCCCeEEEC--CCCCCCCcc
Confidence            467788999999999998864322  122221      1 2333332 111 12356788899999987  4443  233


Q ss_pred             ceEEEECCEEEEEeeC----CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCceEEEEEEEc
Q 041774          206 HGLTYLRGVLYCSFCN----NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDL  281 (382)
Q Consensus       206 ~d~v~~~G~~Y~l~~~----g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~~~~V~~ld~  281 (382)
                      ..++.++|++|++...    ..+..||+..++|+.++..+. +.     .....+..+|+|+++..     ..++  .|.
T Consensus       356 ~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~-~r-----~~~~~~~~~~~IYv~GG-----~~e~--ydp  422 (480)
T PHA02790        356 PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY-PH-----YKSCALVFGRRLFLVGR-----NAEF--YCE  422 (480)
T ss_pred             cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC-cc-----ccceEEEECCEEEEECC-----ceEE--ecC
Confidence            4567899999999631    346789999999998754322 11     22345678999999863     2344  466


Q ss_pred             CCCCEEEcccCCCcEEEEcCCCeeeeeccCCCCcCCCeEEEc
Q 041774          282 IKENWVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVE  323 (382)
Q Consensus       282 ~~~~W~~v~~Lg~~alFlg~~~s~~~~~~~~~g~~~N~IYf~  323 (382)
                      ++.+|..+.+|.-.     +. ..++      ...+|.||..
T Consensus       423 ~~~~W~~~~~m~~~-----r~-~~~~------~v~~~~IYvi  452 (480)
T PHA02790        423 SSNTWTLIDDPIYP-----RD-NPEL------IIVDNKLLLI  452 (480)
T ss_pred             CCCcEeEcCCCCCC-----cc-ccEE------EEECCEEEEE
Confidence            78999999887531     11 1111      1246799999

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=97.32  E-value=0.039  Score=52.93  Aligned_cols=152  Identities=15%  Similarity=0.107  Sum_probs=90.5

Q ss_pred             ceEEEEcC--CCCceeeCCCCcc-cCcc--eEEEcCCCCCCCeEEEEEEEe-eCC------CeEEEEEEecCCCceEEee
Q 041774          130 SSLFFYNP--FSASIIELPPLHM-FSSD--KATFSTAPTSLFCTVFVLSVY-YST------RRICISTCKPGERTWTRHF  197 (382)
Q Consensus       130 ~~~~l~NP--~T~~~i~LP~~~~-~~~~--~v~~s~~p~s~~~~v~~i~~~-~~~------~~~~i~~~r~gd~~W~~~~  197 (382)
                      ..++.+|+  .+.++..+|+++. ....  .+++.       -.+.++... ...      ....+..|.+..++|+.+.
T Consensus        29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~-------~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~  101 (346)
T TIGR03547        29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID-------GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLD  101 (346)
T ss_pred             CeeEEEECCCCCCCceECCCCCCCCcccceEEEEC-------CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCC
Confidence            45666664  6778899988752 2221  22221       123333220 000      0124667899999999874


Q ss_pred             cCCccccc-c-eEE-EECCEEEEEeeC----------------------------------------CeEEEEEcCCCCe
Q 041774          198 FDGFYGDL-H-GLT-YLRGVLYCSFCN----------------------------------------NVLGAFRVSTNSW  234 (382)
Q Consensus       198 ~~~~~~~~-~-d~v-~~~G~~Y~l~~~----------------------------------------g~l~~~d~~~~~~  234 (382)
                      . .++... . ..+ .++|++|++...                                        ..+.+||+..++|
T Consensus       102 ~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W  180 (346)
T TIGR03547       102 T-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQW  180 (346)
T ss_pred             C-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCce
Confidence            2 222211 1 123 689999998521                                        3588999999999


Q ss_pred             EEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCC---C-ceEEEEEEEcCCCCEEEcccCCC
Q 041774          235 KIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSH---R-LQWLVFRFDLIKENWVEVNRLDD  294 (382)
Q Consensus       235 ~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~---~-~~~~V~~ld~~~~~W~~v~~Lg~  294 (382)
                      +.++..+..+.     ...-++..+|+|+++.-...   . ..+.+|.+|.++.+|.++..|..
T Consensus       181 ~~~~~~p~~~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~  239 (346)
T TIGR03547       181 RNLGENPFLGT-----AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP  239 (346)
T ss_pred             eECccCCCCcC-----CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence            98863221111     23345667899999976532   1 14555667777789999998853

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=97.26  E-value=0.041  Score=55.22  Aligned_cols=155  Identities=12%  Similarity=0.073  Sum_probs=92.6

Q ss_pred             ceEEEEcCCCCceeeCCCCc-ccC---cc--eEEEcCCCCCCCeEEEEEEE-eeCCCeEEEEEEecCCCceEEeecC---
Q 041774          130 SSLFFYNPFSASIIELPPLH-MFS---SD--KATFSTAPTSLFCTVFVLSV-YYSTRRICISTCKPGERTWTRHFFD---  199 (382)
Q Consensus       130 ~~~~l~NP~T~~~i~LP~~~-~~~---~~--~v~~s~~p~s~~~~v~~i~~-~~~~~~~~i~~~r~gd~~W~~~~~~---  199 (382)
                      ..++.+|+.+.++..+|+.. .+.   ..  .+++.      + ++.++.. .....+..+..|.+..+.|+.+...   
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~------~-~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~  265 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG------S-TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEG  265 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC------C-EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCC
Confidence            46889999999998776532 111   11  11111      1 1222221 0011123567788999999987421   


Q ss_pred             CcccccceEEEECCEEEEEee------CCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCce
Q 041774          200 GFYGDLHGLTYLRGVLYCSFC------NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQ  273 (382)
Q Consensus       200 ~~~~~~~d~v~~~G~~Y~l~~------~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~~  273 (382)
                      ..+.....++..++++|++.-      ...+.+||+...+|+.++.+...+..   ....-++..+|+++++.-......
T Consensus       266 P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~---R~~~~~~~~~gkiyviGG~~g~~~  342 (470)
T PLN02193        266 PTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSI---RGGAGLEVVQGKVWVVYGFNGCEV  342 (470)
T ss_pred             CCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCC---CCCcEEEEECCcEEEEECCCCCcc
Confidence            112334456778999999862      23578999999999987643111110   012335567899988876432213


Q ss_pred             EEEEEEEcCCCCEEEcccCCC
Q 041774          274 WLVFRFDLIKENWVEVNRLDD  294 (382)
Q Consensus       274 ~~V~~ld~~~~~W~~v~~Lg~  294 (382)
                      -.|+.+|.++.+|.++..+|.
T Consensus       343 ~dv~~yD~~t~~W~~~~~~g~  363 (470)
T PLN02193        343 DDVHYYDPVQDKWTQVETFGV  363 (470)
T ss_pred             CceEEEECCCCEEEEeccCCC
Confidence            457788888999999987753

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=97.19  E-value=0.081  Score=51.45  Aligned_cols=107  Identities=16%  Similarity=0.079  Sum_probs=70.7

Q ss_pred             EEEEEecCCCceEEeecCCcccc--cceEEE-ECCEEEEEeeC-------------------------------------
Q 041774          182 CISTCKPGERTWTRHFFDGFYGD--LHGLTY-LRGVLYCSFCN-------------------------------------  221 (382)
Q Consensus       182 ~i~~~r~gd~~W~~~~~~~~~~~--~~d~v~-~~G~~Y~l~~~-------------------------------------  221 (382)
                      .+..|.+..++|+.+.. ..+..  ....+. .+|++|++...                                     
T Consensus       107 ~v~~YD~~~n~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (376)
T PRK14131        107 DVYKYDPKTNSWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDY  185 (376)
T ss_pred             cEEEEeCCCCEEEeCCC-CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhc
Confidence            46678899999999742 11211  122233 89999999531                                     


Q ss_pred             ---CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCC---C-ceEEEEEEEcCCCCEEEcccCCC
Q 041774          222 ---NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSH---R-LQWLVFRFDLIKENWVEVNRLDD  294 (382)
Q Consensus       222 ---g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~---~-~~~~V~~ld~~~~~W~~v~~Lg~  294 (382)
                         ..+..||+..++|..+...+..+.     ...-+|..+++|+++.-...   + ..+.+|++|.+..+|.++..+..
T Consensus       186 ~~~~~v~~YD~~t~~W~~~~~~p~~~~-----~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~  260 (376)
T PRK14131        186 FFNKEVLSYDPSTNQWKNAGESPFLGT-----AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPP  260 (376)
T ss_pred             CcCceEEEEECCCCeeeECCcCCCCCC-----CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCC
Confidence               358899999999998763332111     23346677899999876432   1 14556677778899999998853

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.00029  Score=64.42  Aligned_cols=37  Identities=24%  Similarity=0.452  Sum_probs=35.2

Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774           18 SWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV   58 (382)
Q Consensus        18 ~Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~   58 (382)
                      .|..||+||+..|++.|    +.+++++...|||+|+.+..
T Consensus        97 ~~~slpDEill~IFs~L----~kk~LL~~~~VC~Rfyr~~~  133 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCL----CKKELLKVSGVCKRFYRLAS  133 (419)
T ss_pred             CcccCCHHHHHHHHHhc----cHHHHHHHHHHHHHHhhccc
Confidence            49999999999999999    99999999999999998865

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=95.60  E-value=2.2  Score=40.71  Aligned_cols=126  Identities=12%  Similarity=0.105  Sum_probs=73.1

Q ss_pred             EEEEEecCCCceEEeecCCcc---cccceEEEECCEEEEEeeC-------CeEEEEEc--CCCCeEEeccCCCCCCccee
Q 041774          182 CISTCKPGERTWTRHFFDGFY---GDLHGLTYLRGVLYCSFCN-------NVLGAFRV--STNSWKIYPHNRIRPTSVYL  249 (382)
Q Consensus       182 ~i~~~r~gd~~W~~~~~~~~~---~~~~d~v~~~G~~Y~l~~~-------g~l~~~d~--~~~~~~~~~~p~~~~~~~~~  249 (382)
                      .+..|.+.++.|+.+.  .++   .....++.++|++|++...       ..+..+|+  ...+|..++.-+........
T Consensus       169 ~v~~YDp~t~~W~~~~--~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~  246 (346)
T TIGR03547       169 NVLSYDPSTNQWRNLG--ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE  246 (346)
T ss_pred             eEEEEECCCCceeECc--cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccc
Confidence            5778999999999873  332   2234567889999998621       13455665  44589877532111000000


Q ss_pred             -eceeEEEEeCCcEEEEEEeCC-----------------C---ceEEEEEEEcCCCCEEEcccCCCcEEEEcCCCeeeee
Q 041774          250 -YYGLIESEHEGSLLSVYYDSH-----------------R---LQWLVFRFDLIKENWVEVNRLDDRALFLNPSSTSMKL  308 (382)
Q Consensus       250 -~~~~~LVe~~G~LllV~~~~~-----------------~---~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~  308 (382)
                       ......+..+|+|+++.-...                 .   ..+++|..  ++.+|+++..|....-.      .+ .
T Consensus       247 ~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~--~~~~W~~~~~lp~~~~~------~~-~  317 (346)
T TIGR03547       247 GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYAL--DNGKWSKVGKLPQGLAY------GV-S  317 (346)
T ss_pred             cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEe--cCCcccccCCCCCCcee------eE-E
Confidence             012236778999999876421                 0   13455544  56789999887632110      11 1


Q ss_pred             ccCCCCcCCCeEEEc
Q 041774          309 AVDDASELANTIHVE  323 (382)
Q Consensus       309 ~~~~~g~~~N~IYf~  323 (382)
                           ...+|.||+.
T Consensus       318 -----~~~~~~iyv~  327 (346)
T TIGR03547       318 -----VSWNNGVLLI  327 (346)
T ss_pred             -----EEcCCEEEEE
Confidence                 1257899998

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=95.14  E-value=2.6  Score=40.93  Aligned_cols=144  Identities=9%  Similarity=0.077  Sum_probs=78.2

Q ss_pred             ceEEEEcCCCCceeeCCCCccc-Ccc-eEEEcCCCCCCCeEEEEEEE-eeCC-CeEEE--EEEecCCCceEEeecCCccc
Q 041774          130 SSLFFYNPFSASIIELPPLHMF-SSD-KATFSTAPTSLFCTVFVLSV-YYST-RRICI--STCKPGERTWTRHFFDGFYG  203 (382)
Q Consensus       130 ~~~~l~NP~T~~~i~LP~~~~~-~~~-~v~~s~~p~s~~~~v~~i~~-~~~~-~~~~i--~~~r~gd~~W~~~~~~~~~~  203 (382)
                      ..+..+||.|.++..+++++.. ... .++..     .+ ++.++.. ...+ ....+  .-+.+.++.|+.+.  .++.
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-----~~-~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~p~  260 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-----GN-KLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP--DLPP  260 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCCcceEEEE-----CC-EEEEEeeeECCCcCChhheEEEecCCCcceeecC--CCCC
Confidence            5688999999999998877642 211 11111     11 2333322 0011 11112  22456778999863  2211


Q ss_pred             --------ccce--EEEECCEEEEEeeCC-----------------------eEEEEEcCCCCeEEeccCCCCCCcceee
Q 041774          204 --------DLHG--LTYLRGVLYCSFCNN-----------------------VLGAFRVSTNSWKIYPHNRIRPTSVYLY  250 (382)
Q Consensus       204 --------~~~d--~v~~~G~~Y~l~~~g-----------------------~l~~~d~~~~~~~~~~~p~~~~~~~~~~  250 (382)
                              ....  .+..+|++|++....                       .+-+||+..++|+.+..-|. +.     
T Consensus       261 ~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~-~r-----  334 (376)
T PRK14131        261 APGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQ-GL-----  334 (376)
T ss_pred             CCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCC-Cc-----
Confidence                    1111  356899999986311                       13468998889987643221 11     


Q ss_pred             ceeEEEEeCCcEEEEEEeCC--CceEEEEEEEcCCCCEE
Q 041774          251 YGLIESEHEGSLLSVYYDSH--RLQWLVFRFDLIKENWV  287 (382)
Q Consensus       251 ~~~~LVe~~G~LllV~~~~~--~~~~~V~~ld~~~~~W~  287 (382)
                      ...-.|..+|+|+++.-...  ...=.|+.++.+..+++
T Consensus       335 ~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~  373 (376)
T PRK14131        335 AYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLT  373 (376)
T ss_pred             cceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence            12246778999999987542  12345555655445554

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.70  E-value=5  Score=36.85  Aligned_cols=121  Identities=16%  Similarity=0.236  Sum_probs=73.2

Q ss_pred             EEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcceEEEcCCCCCCCeEEEEEEEeeCCC
Q 041774          100 IKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTR  179 (382)
Q Consensus       100 ~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~v~~s~~p~s~~~~v~~i~~~~~~~  179 (382)
                      +|.+.+|=+..+.-.              .+.+..+||+++.--.+|+........-...++|.    .-+.|.. . +.
T Consensus       194 i~atpdGsvwyasla--------------gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpi----g~~witt-w-g~  253 (353)
T COG4257         194 ICATPDGSVWYASLA--------------GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPI----GRAWITT-W-GT  253 (353)
T ss_pred             eEECCCCcEEEEecc--------------ccceEEcccccCCcceecCCCcccccccccccCcc----CcEEEec-c-CC
Confidence            566677766666332              25778899999976555554321011112233332    2345554 1 11


Q ss_pred             eEEEEEEecCCCceEEeecCCcc-cccceEEEECCEEEEEe-eCCeEEEEEcCCCCeEEeccCC
Q 041774          180 RICISTCKPGERTWTRHFFDGFY-GDLHGLTYLRGVLYCSF-CNNVLGAFRVSTNSWKIYPHNR  241 (382)
Q Consensus       180 ~~~i~~~r~gd~~W~~~~~~~~~-~~~~d~v~~~G~~Y~l~-~~g~l~~~d~~~~~~~~~~~p~  241 (382)
                       -++..+++.+.+|....++... ..++--|=-.|+++.-+ ..|.|..||+...++.+++.|.
T Consensus       254 -g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr  316 (353)
T COG4257         254 -GSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPR  316 (353)
T ss_pred             -ceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCCC
Confidence             3677889999999988766531 22221222457777644 5789999999999999998763

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=92.06  E-value=0.29  Score=30.73  Aligned_cols=39  Identities=18%  Similarity=0.245  Sum_probs=24.6

Q ss_pred             CCCceEEeecCCcccccceEEEECCEEEEEeeCCeEEEEEcC
Q 041774          189 GERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVS  230 (382)
Q Consensus       189 gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~g~l~~~d~~  230 (382)
                      |+..|+.- .+.  .....+++.+|++|+.+.+|.|+++|..
T Consensus         1 G~~~W~~~-~~~--~~~~~~~v~~g~vyv~~~dg~l~ald~~   39 (40)
T PF13570_consen    1 GKVLWSYD-TGG--PIWSSPAVAGGRVYVGTGDGNLYALDAA   39 (40)
T ss_dssp             S-EEEEEE--SS-----S--EECTSEEEEE-TTSEEEEEETT
T ss_pred             CceeEEEE-CCC--CcCcCCEEECCEEEEEcCCCEEEEEeCC
Confidence            34567753 222  2345678899999999999999999975

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=90.96  E-value=2.1  Score=41.37  Aligned_cols=141  Identities=16%  Similarity=0.092  Sum_probs=81.0

Q ss_pred             EEEEEecCCCceEEeecCCccc--ccceEEEECCEEEEE------e----eCCeEEEEEcCCCCeEEeccCCCCCCccee
Q 041774          182 CISTCKPGERTWTRHFFDGFYG--DLHGLTYLRGVLYCS------F----CNNVLGAFRVSTNSWKIYPHNRIRPTSVYL  249 (382)
Q Consensus       182 ~i~~~r~gd~~W~~~~~~~~~~--~~~d~v~~~G~~Y~l------~----~~g~l~~~d~~~~~~~~~~~p~~~~~~~~~  249 (382)
                      .++.+...+..|+.+..+.-|+  .-.-||..+-+|...      +    ....|++||++.-+|..+..+-..|.  ..
T Consensus       155 D~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~Pt--pR  232 (521)
T KOG1230|consen  155 DLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPT--PR  232 (521)
T ss_pred             heeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCC--CC
Confidence            3455566778999987654321  222344444333332      1    23479999999988988753211111  01


Q ss_pred             eceeEEEEeCCcEEEEEEeCC----------CceEEEEEEEcCC-----CCEEEcccCC----------------CcEEE
Q 041774          250 YYGLIESEHEGSLLSVYYDSH----------RLQWLVFRFDLIK-----ENWVEVNRLD----------------DRALF  298 (382)
Q Consensus       250 ~~~~~LVe~~G~LllV~~~~~----------~~~~~V~~ld~~~-----~~W~~v~~Lg----------------~~alF  298 (382)
                      ....+.|..+|.+++-..+..          .+.-..|.|+.+.     -.|.+|.-.|                +++||
T Consensus       233 SGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~  312 (521)
T KOG1230|consen  233 SGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALF  312 (521)
T ss_pred             CcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEE
Confidence            123456666999988877652          1367889998754     4678876443                35677


Q ss_pred             EcCCCeeeeeccCCCCcCCCeEEEcc
Q 041774          299 LNPSSTSMKLAVDDASELANTIHVEC  324 (382)
Q Consensus       299 lg~~~s~~~~~~~~~g~~~N~IYf~d  324 (382)
                      .|.-+-+--......|.=.|-.||.|
T Consensus       313 FGGV~D~eeeeEsl~g~F~NDLy~fd  338 (521)
T KOG1230|consen  313 FGGVCDLEEEEESLSGEFFNDLYFFD  338 (521)
T ss_pred             ecceecccccchhhhhhhhhhhhhee
Confidence            77554332222223444567777774

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=89.32  E-value=0.8  Score=30.07  Aligned_cols=40  Identities=15%  Similarity=0.174  Sum_probs=31.5

Q ss_pred             EEEEeCCcEEEEEEe---CC-CceEEEEEEEcCCCCEEEcccCC
Q 041774          254 IESEHEGSLLSVYYD---SH-RLQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       254 ~LVe~~G~LllV~~~---~~-~~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      -.|..+++|+++.-+   .. ...-.|+.+|.++.+|.++..+|
T Consensus         6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            356679999999877   11 23778999999999999998775

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=89.28  E-value=16  Score=35.57  Aligned_cols=108  Identities=15%  Similarity=0.149  Sum_probs=71.8

Q ss_pred             eEEEEEEecCCCceEEeecCCcc--cccceEEEE-CCEEEEEee------------CCeEEEEEcCCCCeEEeccCCCCC
Q 041774          180 RICISTCKPGERTWTRHFFDGFY--GDLHGLTYL-RGVLYCSFC------------NNVLGAFRVSTNSWKIYPHNRIRP  244 (382)
Q Consensus       180 ~~~i~~~r~gd~~W~~~~~~~~~--~~~~d~v~~-~G~~Y~l~~------------~g~l~~~d~~~~~~~~~~~p~~~~  244 (382)
                      |..+.+|....++|+.+..+..|  .....+|.+ .|.+|....            .-.++.||+..+.|..+..+- +|
T Consensus        97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~P  175 (521)
T KOG1230|consen   97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GP  175 (521)
T ss_pred             eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CC
Confidence            44577888899999998765532  233344444 366666531            125889999999999987642 22


Q ss_pred             CcceeeceeEEEEeCCcEEEEEEeCC--C---ceEEEEEEEcCCCCEEEccc
Q 041774          245 TSVYLYYGLIESEHEGSLLSVYYDSH--R---LQWLVFRFDLIKENWVEVNR  291 (382)
Q Consensus       245 ~~~~~~~~~~LVe~~G~LllV~~~~~--~---~~~~V~~ld~~~~~W~~v~~  291 (382)
                      ..   ....-+|...-.|+|......  +   .-=.||.+|.++.+|.|++-
T Consensus       176 S~---RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep  224 (521)
T KOG1230|consen  176 SP---RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP  224 (521)
T ss_pred             CC---CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence            21   134467888888888876542  1   13467777888899999987

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=88.27  E-value=1.9  Score=27.66  Aligned_cols=40  Identities=10%  Similarity=0.013  Sum_probs=33.0

Q ss_pred             eEEEEeCCcEEEEEEeCC--CceEEEEEEEcCCCCEEEcccC
Q 041774          253 LIESEHEGSLLSVYYDSH--RLQWLVFRFDLIKENWVEVNRL  292 (382)
Q Consensus       253 ~~LVe~~G~LllV~~~~~--~~~~~V~~ld~~~~~W~~v~~L  292 (382)
                      .-.+..+|+|+++.-...  ...-.|+++|.++.+|+++.+|
T Consensus         5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m   46 (47)
T PF01344_consen    5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM   46 (47)
T ss_dssp             EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred             CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence            346778999999988765  2378899999999999999876

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=86.97  E-value=9.1  Score=38.60  Aligned_cols=107  Identities=19%  Similarity=0.115  Sum_probs=70.1

Q ss_pred             EEEEEecCCCceEEeecCC---cccccceEEEECCEEEEEe-------eCCeEEEEEcCCCCeEEeccCC--CCCCccee
Q 041774          182 CISTCKPGERTWTRHFFDG---FYGDLHGLTYLRGVLYCSF-------CNNVLGAFRVSTNSWKIYPHNR--IRPTSVYL  249 (382)
Q Consensus       182 ~i~~~r~gd~~W~~~~~~~---~~~~~~d~v~~~G~~Y~l~-------~~g~l~~~d~~~~~~~~~~~p~--~~~~~~~~  249 (382)
                      .+..++..+..|+.+....   .+.....++.++-++|+..       ....++++|+...+|+.+....  ..|.    
T Consensus       140 ~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR----  215 (482)
T KOG0379|consen  140 ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPR----  215 (482)
T ss_pred             heEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCC----
Confidence            5778899999999875322   1233445566677788764       2347999999999999875431  1121    


Q ss_pred             eceeEEEEeCCcEEEEEEeC-CC-ceEEEEEEEcCCCCEEEcccCC
Q 041774          250 YYGLIESEHEGSLLSVYYDS-HR-LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       250 ~~~~~LVe~~G~LllV~~~~-~~-~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                       ...-++.-++.++++.-.. .+ ..=.||.||..+.+|.++...|
T Consensus       216 -~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g  260 (482)
T KOG0379|consen  216 -YGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGG  260 (482)
T ss_pred             -CCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccC
Confidence             2334566677777776554 32 2567889998889998765433

>PF13964 Kelch_6: Kelch motif

Probab=86.14  E-value=2.3  Score=27.86  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=27.3

Q ss_pred             ceEEEECCEEEEEee-------CCeEEEEEcCCCCeEEecc
Q 041774          206 HGLTYLRGVLYCSFC-------NNVLGAFRVSTNSWKIYPH  239 (382)
Q Consensus       206 ~d~v~~~G~~Y~l~~-------~g~l~~~d~~~~~~~~~~~  239 (382)
                      ..++..+|++|++..       ...+..||+..++|+.++.
T Consensus         5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~   45 (50)
T PF13964_consen    5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP   45 (50)
T ss_pred             CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC
Confidence            356889999999862       2468999999999999863

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=85.67  E-value=5.7  Score=36.21  Aligned_cols=103  Identities=17%  Similarity=0.239  Sum_probs=62.7

Q ss_pred             EEecCCCceEEeecCCccc---ccceEEEECCEEEEEee---------------CCeEEEEEcCCCCeEEeccCCCCCCc
Q 041774          185 TCKPGERTWTRHFFDGFYG---DLHGLTYLRGVLYCSFC---------------NNVLGAFRVSTNSWKIYPHNRIRPTS  246 (382)
Q Consensus       185 ~~r~gd~~W~~~~~~~~~~---~~~d~v~~~G~~Y~l~~---------------~g~l~~~d~~~~~~~~~~~p~~~~~~  246 (382)
                      ...-.+..|+.+.....+.   ++...+..+|..|+...               ...|.++|+..+.|..-+..+..|++
T Consensus       161 ~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~G  240 (392)
T KOG4693|consen  161 VLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGG  240 (392)
T ss_pred             eEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCc
Confidence            3444567888875433221   23233445677777641               23689999999888765433333332


Q ss_pred             ceeeceeEEEEeCCcEEEEEEeCCCc---eEEEEEEEcCCCCEEEcc
Q 041774          247 VYLYYGLIESEHEGSLLSVYYDSHRL---QWLVFRFDLIKENWVEVN  290 (382)
Q Consensus       247 ~~~~~~~~LVe~~G~LllV~~~~~~~---~~~V~~ld~~~~~W~~v~  290 (382)
                         .........+|+++|...+....   -=++|.+|..+.-|.+++
T Consensus       241 ---RRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~  284 (392)
T KOG4693|consen  241 ---RRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVIS  284 (392)
T ss_pred             ---ccccceEEEcceEEEecccchhhhhhhcceeecccccchheeee
Confidence               12223456789999998776421   346788888888888764

>PF13964 Kelch_6: Kelch motif

Probab=84.97  E-value=1.9  Score=28.25  Aligned_cols=40  Identities=13%  Similarity=0.118  Sum_probs=32.0

Q ss_pred             EEEEeCCcEEEEEEeCC--CceEEEEEEEcCCCCEEEcccCC
Q 041774          254 IESEHEGSLLSVYYDSH--RLQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       254 ~LVe~~G~LllV~~~~~--~~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      -+|..+|+|+++.-...  ...-.|+++|.++.+|+++.+|.
T Consensus         6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp   47 (50)
T PF13964_consen    6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP   47 (50)
T ss_pred             EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence            46778999999987654  23678889999999999998875

>KOG2502 consensus Tub family proteins [General function prediction only]

Probab=83.85  E-value=0.59  Score=43.92  Aligned_cols=40  Identities=18%  Similarity=0.549  Sum_probs=34.0

Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCc-------hhhhhhhccCcchhccccC
Q 041774           17 KSWSNLPPDIVNLIAENLYYYADY-------ADQVRFRTICKSWQSTCVP   59 (382)
Q Consensus        17 ~~Ws~LP~dlL~~Il~rL~~~~~~-------~d~~rfr~VCk~Wrs~~~~   59 (382)
                      ..|++||+++|..|+.|.   +..       ++.+....||+.||..+..
T Consensus        43 ~~~~~l~~~~L~d~~~r~---eese~~wp~r~~vvs~~~~~~~~r~~~~~   89 (355)
T KOG2502|consen   43 SLWAALPPELLSDVLKRD---EESEDTWPSRRNVVSCAGVCDKWREISKE   89 (355)
T ss_pred             chhhcCCHhHHHHHhhhc---cccccccccccccccccchhhhhhhhccc
Confidence            589999999999999999   333       3578999999999998664

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=83.39  E-value=0.6  Score=43.40  Aligned_cols=39  Identities=15%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             CCCCHHHHHHHHHHhcC-CCCchhhhhhhccCcchhcccc
Q 041774           20 SNLPPDIVNLIAENLYY-YADYADQVRFRTICKSWQSTCV   58 (382)
Q Consensus        20 s~LP~dlL~~Il~rL~~-~~~~~d~~rfr~VCk~Wrs~~~   58 (382)
                      +.||+|+|..|+++..- .-++.++.+..+|||.|+-++.
T Consensus       108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R  147 (366)
T KOG2997|consen  108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR  147 (366)
T ss_pred             hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence            57999999999987520 1257999999999999998865

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=82.49  E-value=45  Score=31.94  Aligned_cols=119  Identities=12%  Similarity=0.146  Sum_probs=66.7

Q ss_pred             eEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcceEEEcCCCCCCCeEEEEEEEe--e
Q 041774           99 KIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVY--Y  176 (382)
Q Consensus        99 ~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~v~~s~~p~s~~~~v~~i~~~--~  176 (382)
                      .|.+-.+.+++.++..               ...+|+|+-|.+...+|.+......-+.++-    .+. +.++...  .
T Consensus        70 ~F~al~gskIv~~d~~---------------~~t~vyDt~t~av~~~P~l~~pk~~pisv~V----G~~-LY~m~~~~~~  129 (342)
T PF07893_consen   70 DFFALHGSKIVAVDQS---------------GRTLVYDTDTRAVATGPRLHSPKRCPISVSV----GDK-LYAMDRSPFP  129 (342)
T ss_pred             EEEEecCCeEEEEcCC---------------CCeEEEECCCCeEeccCCCCCCCcceEEEEe----CCe-EEEeeccCcc
Confidence            3444457888888765               5688999999999999987643222222211    111 3333320  0


Q ss_pred             -CCC-----eEEEEEEec------CCCceEEeecCC--ccc-c------cceEEEECCEEEEEeeCC---eEEEEEcCCC
Q 041774          177 -STR-----RICISTCKP------GERTWTRHFFDG--FYG-D------LHGLTYLRGVLYCSFCNN---VLGAFRVSTN  232 (382)
Q Consensus       177 -~~~-----~~~i~~~r~------gd~~W~~~~~~~--~~~-~------~~d~v~~~G~~Y~l~~~g---~l~~~d~~~~  232 (382)
                       ...     .+++..|++      ....|.+...|.  +.. .      +..-+.++|.-.+++..+   ..++||....
T Consensus       130 ~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~  209 (342)
T PF07893_consen  130 EPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESH  209 (342)
T ss_pred             ccccCccceeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCc
Confidence             000     234444542      345565544333  211 1      333333488777776554   4999999988


Q ss_pred             CeEEe
Q 041774          233 SWKIY  237 (382)
Q Consensus       233 ~~~~~  237 (382)
                      +|+..
T Consensus       210 ~W~~~  214 (342)
T PF07893_consen  210 EWRKH  214 (342)
T ss_pred             ceeec
Confidence            89865

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=80.48  E-value=19  Score=36.25  Aligned_cols=108  Identities=18%  Similarity=0.178  Sum_probs=64.4

Q ss_pred             EEEEEecCCCceEEeecCC-cc--cccceEEEECCEEEEEeeCC-------eEEEEEcCCCCeEEeccCCCCCCcceeec
Q 041774          182 CISTCKPGERTWTRHFFDG-FY--GDLHGLTYLRGVLYCSFCNN-------VLGAFRVSTNSWKIYPHNRIRPTSVYLYY  251 (382)
Q Consensus       182 ~i~~~r~gd~~W~~~~~~~-~~--~~~~d~v~~~G~~Y~l~~~g-------~l~~~d~~~~~~~~~~~p~~~~~~~~~~~  251 (382)
                      .+.+++.....|+...... .+  .....++..+.++|.+....       .|+.||+.+.+|..+......|.    ..
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~----~r  164 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPP----PR  164 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCC----Cc
Confidence            3667777777888653211 11  22334556677777775332       79999999999987742111111    02


Q ss_pred             eeEEEEeCCcEEEEEEeC-CC--ceEEEEEEEcCCCCEEEcccCC
Q 041774          252 GLIESEHEGSLLSVYYDS-HR--LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       252 ~~~LVe~~G~LllV~~~~-~~--~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      ..+-+...|+.++|..-. ..  ....+|.+|.+..+|.++...|
T Consensus       165 ~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g  209 (482)
T KOG0379|consen  165 AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQG  209 (482)
T ss_pred             ccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCC
Confidence            223333334555554432 22  3688999999999999987665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	382
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.7
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.55
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.52
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.5
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.5
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.45
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.43
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.38
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.37
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.36
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.36
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.31
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.25
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.14
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.68
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.6
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.6
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.56
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.3
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.25
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.25
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.51
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.52
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.13
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	93.81
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	93.54

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.70  E-value=4.9e-09  Score=70.76  Aligned_cols=39  Identities=23%  Similarity=0.509  Sum_probs=34.8

Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774           16 TKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV   58 (382)
Q Consensus        16 ~~~Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~   58 (382)
                      ...|++||+|++..|+.+|    +..|+++++.|||+|+.++.
T Consensus         6 ~~~~~~LP~eil~~I~~~L----~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCL----CLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTS----CGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCHHHCCHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhC
Confidence            4589999999999999999    99999999999999999865

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.55  E-value=2.7e-05  Score=71.43  Aligned_cols=196  Identities=13%  Similarity=0.103  Sum_probs=122.6

Q ss_pred             ceeeeecCCCcEEEecCCCcC-CCCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCc
Q 041774           75 ISHLFDTTHKLKYTIKTDPRV-LHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSS  153 (382)
Q Consensus        75 ~~~~~~~~~~~~~~~~l~p~~-~~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~  153 (382)
                      ....||+.+++|..+...|.. ..+.. ...+|-|++......+         .....+..+||.|+++..+|+++....
T Consensus        31 ~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~lyv~GG~~~~---------~~~~~~~~~d~~~~~W~~~~~~p~~r~  100 (302)
T 2xn4_A           31 SVECYDFKEERWHQVAELPSRRCRAGM-VYMAGLVFAVGGFNGS---------LRVRTVDSYDPVKDQWTSVANMRDRRS  100 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEESCBCSS---------SBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred             cEEEEcCcCCcEeEcccCCcccccceE-EEECCEEEEEeCcCCC---------ccccceEEECCCCCceeeCCCCCcccc
Confidence            345789999988877432432 22222 2346777776442110         113678999999999999987765433


Q ss_pred             c--eEEEcCCCCCCCeEEEEEEE-eeCCCeEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEee--------CC
Q 041774          154 D--KATFSTAPTSLFCTVFVLSV-YYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFC--------NN  222 (382)
Q Consensus       154 ~--~v~~s~~p~s~~~~v~~i~~-~~~~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~--------~g  222 (382)
                      .  .+++.      +. ++++.. ........+..|.+..+.|+.+.....+.....++.++|++|++..        ..
T Consensus       101 ~~~~~~~~------~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  173 (302)
T 2xn4_A          101 TLGAAVLN------GL-LYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLS  173 (302)
T ss_dssp             SCEEEEET------TE-EEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECC
T ss_pred             ceEEEEEC------CE-EEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCcccc
Confidence            2  22331      22 333332 0111124577899999999988421122334456778999999851        34


Q ss_pred             eEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC-ceEEEEEEEcCCCCEEEcccCC
Q 041774          223 VLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR-LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       223 ~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      .+..||+..++|+.++..+. +.     ....++..+|+|+++.-.... ..-.|+.+|.++.+|.++..+.
T Consensus       174 ~~~~yd~~~~~W~~~~~~p~-~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~  239 (302)
T 2xn4_A          174 TVECYNATTNEWTYIAEMST-RR-----SGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN  239 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSS-CC-----BSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred             EEEEEeCCCCcEEECCCCcc-cc-----ccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC
Confidence            68999999999998853321 11     223456678999998765432 1346888898999999998775

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.52  E-value=1e-05  Score=74.39  Aligned_cols=195  Identities=10%  Similarity=-0.027  Sum_probs=122.2

Q ss_pred             ceeeeecCCCcEEEecCCCcCC-CCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCc
Q 041774           75 ISHLFDTTHKLKYTIKTDPRVL-HSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSS  153 (382)
Q Consensus        75 ~~~~~~~~~~~~~~~~l~p~~~-~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~  153 (382)
                      .+..||+.+++|..+...|... .+.. ...+|-|++..... +         .....+..+||.|+++..+|+++....
T Consensus        25 ~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~lyv~GG~~-~---------~~~~~~~~~d~~~~~W~~~~~~p~~r~   93 (306)
T 3ii7_A           25 SCRYFNPKDYSWTDIRCPFEKRRDAAC-VFWDNVVYILGGSQ-L---------FPIKRMDCYNVVKDSWYSKLGPPTPRD   93 (306)
T ss_dssp             SEEEEETTTTEEEECCCCSCCCBSCEE-EEETTEEEEECCBS-S---------SBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred             eEEEecCCCCCEecCCCCCcccceeEE-EEECCEEEEEeCCC-C---------CCcceEEEEeCCCCeEEECCCCCcccc
Confidence            5668999999998774324322 2222 23477777665431 1         124688999999999988887665433


Q ss_pred             c--eEEEcCCCCCCCeEEEEEEEee--CCCeEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEee---------
Q 041774          154 D--KATFSTAPTSLFCTVFVLSVYY--STRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFC---------  220 (382)
Q Consensus       154 ~--~v~~s~~p~s~~~~v~~i~~~~--~~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~---------  220 (382)
                      .  .+++      .+ +++++....  ......+..|.+..+.|+.+.....+.....++..+|++|++..         
T Consensus        94 ~~~~~~~------~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~  166 (306)
T 3ii7_A           94 SLAACAA------EG-KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGR  166 (306)
T ss_dssp             SCEEEEE------TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCE
T ss_pred             ceeEEEE------CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccc
Confidence            2  2222      12 233332201  11123467889999999987321122334456778999999862         


Q ss_pred             -CCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC-ceEEEEEEEcCCCCEEEcccCC
Q 041774          221 -NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR-LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       221 -~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                       ...+.+||+..++|+.++..+. +.     ....++..+|+|+++.-.... ..-.|+.+|.++.+|.++..+.
T Consensus       167 ~~~~~~~yd~~~~~W~~~~~~p~-~r-----~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p  235 (306)
T 3ii7_A          167 VLNSCEVYDPATETWTELCPMIE-AR-----KNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP  235 (306)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSS-CC-----BSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCS
T ss_pred             ccceEEEeCCCCCeEEECCCccc-hh-----hcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC
Confidence             3468999999999998863221 11     233456678999888654432 1346788898999999998765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.50  E-value=2.4e-05  Score=71.72  Aligned_cols=199  Identities=13%  Similarity=0.071  Sum_probs=122.0

Q ss_pred             ceeeeecCCCcEEEecCCCcCCCCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCc---eeeCCCCccc
Q 041774           75 ISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSAS---IIELPPLHMF  151 (382)
Q Consensus        75 ~~~~~~~~~~~~~~~~l~p~~~~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~---~i~LP~~~~~  151 (382)
                      ....||+.+++|..+...|...........+|-|++......+         .....++++||.|++   +..+|+++..
T Consensus        32 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~~~~~~d~~~~~~~~W~~~~~~p~~  102 (301)
T 2vpj_A           32 VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGR---------SRLSSVECLDYTADEDGVWYSVAPMNVR  102 (301)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS---------CBCCCEEEEETTCCTTCCCEEECCCSSC
T ss_pred             EEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCC---------ccCceEEEEECCCCCCCeeEECCCCCCC
Confidence            3457899999888774324321112223346777766443111         113678999999999   9888877654


Q ss_pred             CcceEEEcCCCCCCCeEEEEEEE-eeCCCeEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEee------CCeE
Q 041774          152 SSDKATFSTAPTSLFCTVFVLSV-YYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFC------NNVL  224 (382)
Q Consensus       152 ~~~~v~~s~~p~s~~~~v~~i~~-~~~~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~------~g~l  224 (382)
                      .....+...    .+ +++++.. ........+..|.+..++|+.+.....+.....++..+|++|++..      ...+
T Consensus       103 r~~~~~~~~----~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  177 (301)
T 2vpj_A          103 RGLAGATTL----GD-MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSV  177 (301)
T ss_dssp             CBSCEEEEE----TT-EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCE
T ss_pred             ccceeEEEE----CC-EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceE
Confidence            332221111    12 2333332 0111123577899999999987422122334456778999999852      3469


Q ss_pred             EEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC-ceEEEEEEEcCCCCEEEcccCC
Q 041774          225 GAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR-LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       225 ~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      .+||+...+|+.++..+. +.     ....++..+|+|+++.-.... ..-.|+.+|.++.+|.++..+.
T Consensus       178 ~~~d~~~~~W~~~~~~p~-~r-----~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  241 (301)
T 2vpj_A          178 EKYDPHTGHWTNVTPMAT-KR-----SGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT  241 (301)
T ss_dssp             EEEETTTTEEEEECCCSS-CC-----BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred             EEEeCCCCcEEeCCCCCc-cc-----ccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence            999999999998853221 11     233456678999888765432 1346788898999999998764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.50  E-value=0.00017  Score=66.55  Aligned_cols=201  Identities=14%  Similarity=0.135  Sum_probs=122.4

Q ss_pred             ceeeeecCCCcEEEecCCCc-CCCC-eEEEcCCceEEEEecCC-CCCCceeeeccCCCceEEEEcCCCCceeeCCCCccc
Q 041774           75 ISHLFDTTHKLKYTIKTDPR-VLHS-KIKASKDGWVLFSKANI-NPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMF  151 (382)
Q Consensus        75 ~~~~~~~~~~~~~~~~l~p~-~~~~-~~~gs~~GwL~~~~~~~-~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~  151 (382)
                      ....||+.+++|..... |. .++. ..+...+|-|++..... ++...    -......+..+||.|+++..+|+++..
T Consensus        25 ~~~~yd~~~~~W~~~~~-~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~----~~~~~~~~~~~d~~~~~W~~~~~~p~~   99 (318)
T 2woz_A           25 AAVAYDPMENECYLTAL-AEQIPRNHSSIVTQQNQVYVVGGLYVDEENK----DQPLQSYFFQLDNVSSEWVGLPPLPSA   99 (318)
T ss_dssp             EEEEEETTTTEEEEEEE-CTTSCSSEEEEECSSSCEEEEESSCC-----------CCCBEEEEEETTTTEEEECSCBSSC
T ss_pred             ceEEECCCCCceecccC-CccCCccceEEEEECCEEEEECCcccCcccc----CCCccccEEEEeCCCCcEEECCCCCcc
Confidence            45689999999877544 32 2222 22344577777765420 00000    000023478999999999999887654


Q ss_pred             Ccc--eEEEcCCCCCCCeEEEEEEEee--CC-CeEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEee------
Q 041774          152 SSD--KATFSTAPTSLFCTVFVLSVYY--ST-RRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFC------  220 (382)
Q Consensus       152 ~~~--~v~~s~~p~s~~~~v~~i~~~~--~~-~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~------  220 (382)
                      ...  .+++      .+. +.++....  .. ....+..|.+..++|+.+.....+.....++..+|++|++..      
T Consensus       100 r~~~~~~~~------~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A          100 RCLFGLGEV------DDK-IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             BCSCEEEEE------TTE-EEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSC
T ss_pred             ccccceEEE------CCE-EEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCC
Confidence            332  2223      122 33333201  11 124577889999999987421112233456779999999862      


Q ss_pred             -CCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC-ceEEEEEEEcCCCCEEEcccCC
Q 041774          221 -NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR-LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       221 -~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                       ...+..||+..++|+.++..+. +.     ...-.+..+|+|+++.-.... ..-.|+.+|.++.+|.++..+.
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~-~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p  241 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKT-PR-----SMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFP  241 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSS-CC-----BSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCS
T ss_pred             ccceEEEEcCCCCEEEECCCCCC-Cc-----ccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCC
Confidence             2359999999999998863221 11     223356679999999876543 2457888899999999998765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.45  E-value=2.4e-05  Score=72.19  Aligned_cols=233  Identities=12%  Similarity=0.095  Sum_probs=137.2

Q ss_pred             CchhhhhhhccCcchhcccc-CCCCCCC-----CCceeecC------C------ceeeeecCCCcEEEecCCCcCCCCeE
Q 041774           39 DYADQVRFRTICKSWQSTCV-PLKEINL-----QPWLFSCH------S------ISHLFDTTHKLKYTIKTDPRVLHSKI  100 (382)
Q Consensus        39 ~~~d~~rfr~VCk~Wrs~~~-~~~~~~~-----~Pwll~~p------~------~~~~~~~~~~~~~~~~l~p~~~~~~~  100 (382)
                      .+.++.+|-...+.|..+.. |......     --.++++-      .      ....||+.+++|..+...|.......
T Consensus        37 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  116 (308)
T 1zgk_A           37 SLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG  116 (308)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             CcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence            34566677777888988743 2110000     01222221      1      24568898888877643233211122


Q ss_pred             EEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcce--EEEcCCCCCCCeEEEEEEE-eeC
Q 041774          101 KASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDK--ATFSTAPTSLFCTVFVLSV-YYS  177 (382)
Q Consensus       101 ~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~--v~~s~~p~s~~~~v~~i~~-~~~  177 (382)
                      ....+|-|++.......         .....+..+||.|.++..+++++......  +++      .+ +++++.. ...
T Consensus       117 ~~~~~~~iyv~GG~~~~---------~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~------~~-~iyv~GG~~~~  180 (308)
T 1zgk_A          117 VGVIDGHIYAVGGSHGC---------IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL------NR-LLYAVGGFDGT  180 (308)
T ss_dssp             EEEETTEEEEECCEETT---------EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE------TT-EEEEECCBCSS
T ss_pred             EEEECCEEEEEcCCCCC---------cccccEEEECCCCCeEeECCCCCccccceEEEEE------CC-EEEEEeCCCCC
Confidence            23347777776432100         01357889999999999998776543322  222      12 2333322 011


Q ss_pred             CCeEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEee------CCeEEEEEcCCCCeEEeccCCCCCCcceeec
Q 041774          178 TRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFC------NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYY  251 (382)
Q Consensus       178 ~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~------~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~  251 (382)
                      .....+..|.+..+.|+.+.....+.....++.++|++|++..      ...+.+||+..++|+.+...+. +.     .
T Consensus       181 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r-----~  254 (308)
T 1zgk_A          181 NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH-RR-----S  254 (308)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS-CC-----B
T ss_pred             CcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC-Cc-----c
Confidence            1123567899999999987421122334456778999999962      2469999999999998864332 11     1


Q ss_pred             eeEEEEeCCcEEEEEEeCCC-ceEEEEEEEcCCCCEEEcccCC
Q 041774          252 GLIESEHEGSLLSVYYDSHR-LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       252 ~~~LVe~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      ..-++..+|+|+++.-.... ..-.|+.+|.++.+|.++..|.
T Consensus       255 ~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  297 (308)
T 1zgk_A          255 ALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT  297 (308)
T ss_dssp             SCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred             ceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCC
Confidence            23355578999888765432 2457888899999999997765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.43  E-value=4e-05  Score=70.40  Aligned_cols=200  Identities=12%  Similarity=0.095  Sum_probs=121.7

Q ss_pred             ceeeeecCCCcEEEecCCCcCCCCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcc
Q 041774           75 ISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSD  154 (382)
Q Consensus        75 ~~~~~~~~~~~~~~~~l~p~~~~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~  154 (382)
                      ....||+.+++|..+...|...........+|-|++......+        ......+..+||.|.++..+|+++.....
T Consensus        71 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  142 (306)
T 3ii7_A           71 RMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVG--------NSALYLFECYDTRTESWHTKPSMLTQRCS  142 (306)
T ss_dssp             EEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTT--------BSCCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred             eEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCC--------CcEeeeEEEEeCCCCceEeCCCCcCCcce
Confidence            3456899998887764324322112222346777766442101        01246789999999999988877654332


Q ss_pred             eEEEcCCCCCCCeEEEEEEE-eeCCC----eEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEee------CCe
Q 041774          155 KATFSTAPTSLFCTVFVLSV-YYSTR----RICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFC------NNV  223 (382)
Q Consensus       155 ~v~~s~~p~s~~~~v~~i~~-~~~~~----~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~------~g~  223 (382)
                      ..+...    .+ ++.++.. .....    ...+..|.+.++.|+.+.....+.....++..+|++|++..      ...
T Consensus       143 ~~~~~~----~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~  217 (306)
T 3ii7_A          143 HGMVEA----NG-LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDN  217 (306)
T ss_dssp             CEEEEE----TT-EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCC
T ss_pred             eEEEEE----CC-EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCce
Confidence            211111    12 2333221 01111    23567899999999998421122334557778999999852      346


Q ss_pred             EEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC-ceEEEEEEEcCCCCEEEcccCC
Q 041774          224 LGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR-LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       224 l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      +.+||+..++|+.++..+. +.     ....++..+|+|+++.-.... ..-.|+.+|.++.+|.++..+.
T Consensus       218 ~~~yd~~~~~W~~~~~~p~-~r-----~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~  282 (306)
T 3ii7_A          218 VEYYDIKLNEWKMVSPMPW-KG-----VTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVR  282 (306)
T ss_dssp             EEEEETTTTEEEECCCCSC-CB-----SCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEE
T ss_pred             EEEeeCCCCcEEECCCCCC-Cc-----cceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcc
Confidence            8999999999998854322 11     223455668999998875432 2457888999999999987653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.38  E-value=2.4e-05  Score=72.11  Aligned_cols=197  Identities=12%  Similarity=0.080  Sum_probs=120.4

Q ss_pred             ceeeeecCCCcEEEecCCCcC-CCCeEEEcCCceEEEEecCC---CCCCceeeeccCCCceEEEEcCCCCceeeCCCCcc
Q 041774           75 ISHLFDTTHKLKYTIKTDPRV-LHSKIKASKDGWVLFSKANI---NPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHM  150 (382)
Q Consensus        75 ~~~~~~~~~~~~~~~~l~p~~-~~~~~~gs~~GwL~~~~~~~---~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~  150 (382)
                      ....||+.+++|..+...|.. ..+.. ...+|-|++.....   .+.        ...+.+..+||.|+++..+|+++.
T Consensus        40 ~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~lyv~GG~~~~~~~~--------~~~~~~~~~d~~~~~W~~~~~~p~  110 (308)
T 1zgk_A           40 YLEAYNPSNGTWLRLADLQVPRSGLAG-CVVGGLLYAVGGRNNSPDGN--------TDSSALDCYNPMTNQWSPCAPMSV  110 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEE-EEETTEEEEECCEEEETTEE--------EECCCEEEEETTTTEEEECCCCSS
T ss_pred             eEEEEcCCCCeEeECCCCCcccccceE-EEECCEEEEECCCcCCCCCC--------eecceEEEECCCCCeEeECCCCCc
Confidence            456789999998877432332 12222 23467676664320   000        013578899999999999988765


Q ss_pred             cCcc--eEEEcCCCCCCCeEEEEEEE-eeCCCeEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEee------C
Q 041774          151 FSSD--KATFSTAPTSLFCTVFVLSV-YYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFC------N  221 (382)
Q Consensus       151 ~~~~--~v~~s~~p~s~~~~v~~i~~-~~~~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~------~  221 (382)
                      ....  .+++.      + +++++.. ........+..|.+..++|+.+.....+.....++..+|++|++..      .
T Consensus       111 ~r~~~~~~~~~------~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  183 (308)
T 1zgk_A          111 PRNRIGVGVID------G-HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL  183 (308)
T ss_dssp             CCBTCEEEEET------T-EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBC
T ss_pred             CccccEEEEEC------C-EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcC
Confidence            4332  22221      2 2333321 0010112466889999999987421122234456778999999862      3


Q ss_pred             CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC-ceEEEEEEEcCCCCEEEcccCC
Q 041774          222 NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR-LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       222 g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      ..+..||+..++|+.++..+. +.     .....+..+|+|+++.-.... ..-.|+.+|.++.+|.++..+.
T Consensus       184 ~~~~~yd~~~~~W~~~~~~p~-~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  250 (308)
T 1zgk_A          184 NSAECYYPERNEWRMITAMNT-IR-----SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK  250 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSS-CC-----BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred             ceEEEEeCCCCeEeeCCCCCC-cc-----ccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC
Confidence            469999999999998854321 11     223455668999988765432 2456788898999999998765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.37  E-value=5.9e-05  Score=69.02  Aligned_cols=233  Identities=13%  Similarity=0.114  Sum_probs=134.8

Q ss_pred             chhhhhhhccCcchhcccc-CCCCCC-----CCCceeecCC--------ceeeeecCCCc---EEEecCCCcCCCCeEEE
Q 041774           40 YADQVRFRTICKSWQSTCV-PLKEIN-----LQPWLFSCHS--------ISHLFDTTHKL---KYTIKTDPRVLHSKIKA  102 (382)
Q Consensus        40 ~~d~~rfr~VCk~Wrs~~~-~~~~~~-----~~Pwll~~p~--------~~~~~~~~~~~---~~~~~l~p~~~~~~~~g  102 (382)
                      ..++.+|-..-+.|..+.. |.....     .--.++++-.        ....||+.+++   |..+...|.........
T Consensus        30 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~  109 (301)
T 2vpj_A           30 IDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT  109 (301)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred             eeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence            3455666667778877643 211000     0012222211        34578998888   87663323321112223


Q ss_pred             cCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcceEEEcCCCCCCCeEEEEEEEeeCC--Ce
Q 041774          103 SKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYST--RR  180 (382)
Q Consensus       103 s~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~v~~s~~p~s~~~~v~~i~~~~~~--~~  180 (382)
                      ..+|-|++.......         .....+..+||.|.++..+|+++.......+...    .+ +++++.. ..+  ..
T Consensus       110 ~~~~~lyv~GG~~~~---------~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~-~iyv~GG-~~~~~~~  174 (301)
T 2vpj_A          110 TLGDMIYVSGGFDGS---------RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA----SG-VIYCLGG-YDGLNIL  174 (301)
T ss_dssp             EETTEEEEECCBCSS---------CBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE----TT-EEEEECC-BCSSCBC
T ss_pred             EECCEEEEEcccCCC---------cccceEEEEcCCCCeEEECCCCCCCcccceEEEE----CC-EEEEECC-CCCCccc
Confidence            347777776542110         0135789999999999887766543332211111    12 2333322 111  12


Q ss_pred             EEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEee------CCeEEEEEcCCCCeEEeccCCCCCCcceeeceeE
Q 041774          181 ICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFC------NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLI  254 (382)
Q Consensus       181 ~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~------~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~  254 (382)
                      ..+..|.+.++.|+.+.....+.....++..+|++|++..      ...+..||+...+|+.++..+. +.     ...-
T Consensus       175 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r-----~~~~  248 (301)
T 2vpj_A          175 NSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT-PR-----CYVG  248 (301)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS-CC-----BSCE
T ss_pred             ceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC-cc-----ccee
Confidence            3467889999999988421122334457788999999963      3469999999999998864332 11     1223


Q ss_pred             EEEeCCcEEEEEEeCCC-ceEEEEEEEcCCCCEEEcccCC
Q 041774          255 ESEHEGSLLSVYYDSHR-LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       255 LVe~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      .+..+|+|+++.-.... ..-.|+.+|.++.+|.++..+.
T Consensus       249 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~  288 (301)
T 2vpj_A          249 ATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMG  288 (301)
T ss_dssp             EEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEE
T ss_pred             EEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCC
Confidence            55568998888765432 2467889999999999997654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.36  E-value=0.00012  Score=67.65  Aligned_cols=199  Identities=10%  Similarity=0.099  Sum_probs=121.7

Q ss_pred             ceeeeecCCCcEEEecCCCc-CCCC-eEEEcCCceEEEEecCC---CCCCceeeeccCCCceEEEEcCCCCceeeCCCCc
Q 041774           75 ISHLFDTTHKLKYTIKTDPR-VLHS-KIKASKDGWVLFSKANI---NPSPFLFISYNSSPSSLFFYNPFSASIIELPPLH  149 (382)
Q Consensus        75 ~~~~~~~~~~~~~~~~l~p~-~~~~-~~~gs~~GwL~~~~~~~---~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~  149 (382)
                      ....||+.+++|....+ |. ..+. ......+|-|++.....   .+..      ......+..+||.|+++..+|+++
T Consensus        14 ~~~~yd~~~~~W~~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~------~~~~~~~~~~d~~~~~W~~~~~~p   86 (315)
T 4asc_A           14 GAVAYDPAANECYCASL-SSQVPKNHVSLVTKENQVFVAGGLFYNEDNKE------DPMSAYFLQFDHLDSEWLGMPPLP   86 (315)
T ss_dssp             EEEEEETTTTEEEEEEC-CCCSCSSEEEEECTTCCEEEEEEEEECSSCSS------SCEEEEEEEEETTTTEEEECCCBS
T ss_pred             ceEEECCCCCeEecCCC-CCCCCccceEEEEECCEEEEEcCcccCCCCCc------cccccceEEecCCCCeEEECCCCC
Confidence            45679999999876554 32 1222 22334566666654310   0000      000234789999999999999876


Q ss_pred             ccCcc--eEEEcCCCCCCCeEEEEEEEee----CCCeEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEeeC--
Q 041774          150 MFSSD--KATFSTAPTSLFCTVFVLSVYY----STRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCN--  221 (382)
Q Consensus       150 ~~~~~--~v~~s~~p~s~~~~v~~i~~~~----~~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~--  221 (382)
                      .....  .+++      .+ ++.++....    ......+..|.+.+++|+.+..-..+.....++..+|++|++...  
T Consensus        87 ~~r~~~~~~~~------~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  159 (315)
T 4asc_A           87 SPRCLFGLGEA------LN-SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGS  159 (315)
T ss_dssp             SCEESCEEEEE------TT-EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCT
T ss_pred             cchhceeEEEE------CC-EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCC
Confidence            54332  2222      12 233322100    111234678899999999874211223344567799999999632  


Q ss_pred             -----CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC-ceEEEEEEEcCCCCEEEcccCC
Q 041774          222 -----NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR-LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       222 -----g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                           ..+..||+...+|+.++..+. +.     .....+..+|+|+++.-.... ..-.|+.+|.++.+|.++..+.
T Consensus       160 ~~~~~~~~~~yd~~~~~W~~~~~~p~-~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p  231 (315)
T 4asc_A          160 DRKCLNKMCVYDPKKFEWKELAPMQT-AR-----SLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFP  231 (315)
T ss_dssp             TSCBCCCEEEEETTTTEEEECCCCSS-CC-----BSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCS
T ss_pred             CCcccceEEEEeCCCCeEEECCCCCC-ch-----hceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCC
Confidence                 469999999999998863221 11     233456679999999876543 2457888999999999998764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.36  E-value=5.8e-05  Score=69.21  Aligned_cols=197  Identities=14%  Similarity=0.107  Sum_probs=119.6

Q ss_pred             ceeeeecCCCcEEEecCCCcCCCCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcc
Q 041774           75 ISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSD  154 (382)
Q Consensus        75 ~~~~~~~~~~~~~~~~l~p~~~~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~  154 (382)
                      ....||+.+++|..+...|...........+|-+++......+.         ....+..+||.|.++..+|+++.....
T Consensus        78 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---------~~~~~~~~d~~~~~W~~~~~~p~~r~~  148 (302)
T 2xn4_A           78 TVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST---------GLSSVEAYNIKSNEWFHVAPMNTRRSS  148 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSC---------EEEEEEEEETTTTEEEEECCCSSCCBS
T ss_pred             ceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCc---------cCceEEEEeCCCCeEeecCCCCCcccC
Confidence            34578999988887743233211112223467777664321100         125788999999999988877654332


Q ss_pred             e--EEEcCCCCCCCeEEEEEEEe-eCCC--eEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEee------CCe
Q 041774          155 K--ATFSTAPTSLFCTVFVLSVY-YSTR--RICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFC------NNV  223 (382)
Q Consensus       155 ~--v~~s~~p~s~~~~v~~i~~~-~~~~--~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~------~g~  223 (382)
                      .  +++      .+ ++.++... ....  ...+..|.+.++.|+.+.....+.....++.++|++|++..      ...
T Consensus       149 ~~~~~~------~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~  221 (302)
T 2xn4_A          149 VGVGVV------GG-LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKS  221 (302)
T ss_dssp             CEEEEE------TT-EEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCC
T ss_pred             ceEEEE------CC-EEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccce
Confidence            2  222      12 23333210 1110  12467889999999988421122334457788999999962      246


Q ss_pred             EEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC-ceEEEEEEEcCCCCEEEcc-cCC
Q 041774          224 LGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR-LQWLVFRFDLIKENWVEVN-RLD  293 (382)
Q Consensus       224 l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~-~Lg  293 (382)
                      +..||+...+|+.++..+.. .     ...-++..+|+|+++.-.... ..-.|+.+|.++.+|.++. .|.
T Consensus       222 ~~~yd~~~~~W~~~~~~~~~-r-----~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~  287 (302)
T 2xn4_A          222 VEVYDPTTNAWRQVADMNMC-R-----RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMS  287 (302)
T ss_dssp             EEEEETTTTEEEEECCCSSC-C-----BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCS
T ss_pred             EEEEeCCCCCEeeCCCCCCc-c-----ccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccC
Confidence            99999999999988643321 1     122356678999988765432 2346788898899999986 553

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.31  E-value=0.00011  Score=67.86  Aligned_cols=194  Identities=13%  Similarity=0.097  Sum_probs=118.2

Q ss_pred             eeeeecCCCcEEEecCCCcC-CCCeEEEcCCceEEEEecCC--CCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccC
Q 041774           76 SHLFDTTHKLKYTIKTDPRV-LHSKIKASKDGWVLFSKANI--NPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFS  152 (382)
Q Consensus        76 ~~~~~~~~~~~~~~~l~p~~-~~~~~~gs~~GwL~~~~~~~--~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~  152 (382)
                      ...||+.+++|..+...|.. ..+. ....+|-|++.....  .+.        ...+.+..+||.|+++..+++++...
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~~~~lyv~GG~~~~~~~--------~~~~~~~~~d~~~~~W~~~~~~p~~r  139 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLFG-LGEALNSIYVVGGREIKDGE--------RCLDSVMCYDRLSFKWGESDPLPYVV  139 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESCE-EEEETTEEEEECCEESSTTC--------CBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred             eEEecCCCCeEEECCCCCcchhcee-EEEECCEEEEEeCCcCCCCC--------cccceEEEECCCCCcEeECCCCCCcc
Confidence            34688988888766321321 1222 233467777664420  000        12467899999999999998876543


Q ss_pred             cceEEEcCCCCCCCeEEEEEEEe-eC-CCeEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEee------CCeE
Q 041774          153 SDKATFSTAPTSLFCTVFVLSVY-YS-TRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFC------NNVL  224 (382)
Q Consensus       153 ~~~v~~s~~p~s~~~~v~~i~~~-~~-~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~------~g~l  224 (382)
                      ....+...    .+ ++.++... .. .....+..|.+.+++|+.+..-..+.....++.++|++|++..      ...+
T Consensus       140 ~~~~~~~~----~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  214 (315)
T 4asc_A          140 YGHTVLSH----MD-LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSA  214 (315)
T ss_dssp             BSCEEEEE----TT-EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEE
T ss_pred             cceeEEEE----CC-EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceE
Confidence            33222111    12 23333320 01 1123567889999999987421122334556788999999862      1268


Q ss_pred             EEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCC----------CceEEEEEEEcCCCCEEEc
Q 041774          225 GAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSH----------RLQWLVFRFDLIKENWVEV  289 (382)
Q Consensus       225 ~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~----------~~~~~V~~ld~~~~~W~~v  289 (382)
                      .+||+..++|+.++..+. +.     ...-++..+|+|+++.-...          ...-.||.+|.++.+|.++
T Consensus       215 ~~yd~~~~~W~~~~~~p~-~r-----~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          215 EVYSITDNKWAPFEAFPQ-ER-----SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EEEETTTTEEEEECCCSS-CC-----BSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             EEEECCCCeEEECCCCCC-cc-----cceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            899999999998864332 11     23346677999999976531          1135789999999999998

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.25  E-value=7e-05  Score=69.30  Aligned_cols=195  Identities=13%  Similarity=0.113  Sum_probs=116.5

Q ss_pred             eeeeecCCCcEEEecCCCcCCCCeEEEcCCceEEEEecCC-CCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcc
Q 041774           76 SHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANI-NPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSD  154 (382)
Q Consensus        76 ~~~~~~~~~~~~~~~l~p~~~~~~~~gs~~GwL~~~~~~~-~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~  154 (382)
                      ...||+.+++|..+...|...........+|.|++..... .+.        .....+..+||.|.++..+++++.....
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~yd~~~~~W~~~~~~p~~r~~  151 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTE--------ASLDSVLCYDPVAAKWSEVKNLPIKVYG  151 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTC--------CEEEEEEEEETTTTEEEEECCCSSCEES
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCC--------cccceEEEEeCCCCCEeECCCCCCcccc
Confidence            3468888888877632133211122233477777764321 000        0125788999999999888776543332


Q ss_pred             eEEEcCCCCCCCeEEEEEEEe-eC-CCeEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEee------CCeEEE
Q 041774          155 KATFSTAPTSLFCTVFVLSVY-YS-TRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFC------NNVLGA  226 (382)
Q Consensus       155 ~v~~s~~p~s~~~~v~~i~~~-~~-~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~------~g~l~~  226 (382)
                      ..+...    .+ ++.++... .. .....+..|.+.+++|+.+.....+.....++.++|++|++..      ...+.+
T Consensus       152 ~~~~~~----~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  226 (318)
T 2woz_A          152 HNVISH----NG-MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEA  226 (318)
T ss_dssp             CEEEEE----TT-EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEEE----CC-EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEE
Confidence            211111    12 23333210 11 1123467899999999988421122334456788999999862      236789


Q ss_pred             EEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCC----------CceEEEEEEEcCCCCEEEc
Q 041774          227 FRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSH----------RLQWLVFRFDLIKENWVEV  289 (382)
Q Consensus       227 ~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~----------~~~~~V~~ld~~~~~W~~v  289 (382)
                      ||+..++|+.++..|. +.     ....++..+|+|+++.-...          ...-.||.+|.++.+|.++
T Consensus       227 yd~~~~~W~~~~~~p~-~r-----~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          227 FDLKTNKWEVMTEFPQ-ER-----SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EETTTCCEEECCCCSS-CC-----BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             EECCCCeEEECCCCCC-cc-----cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            9999999998864332 11     23346677899998865432          1135788999999999998

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.14  E-value=8.1e-07  Score=81.30  Aligned_cols=39  Identities=18%  Similarity=0.376  Sum_probs=36.1

Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCchhhh-hhhccCcchhccccC
Q 041774           17 KSWSNLPPDIVNLIAENLYYYADYADQV-RFRTICKSWQSTCVP   59 (382)
Q Consensus        17 ~~Ws~LP~dlL~~Il~rL~~~~~~~d~~-rfr~VCk~Wrs~~~~   59 (382)
                      ...+.||+|||.+|+.+|    |..|++ |++.|||+||+++..
T Consensus        49 ~~~~~LP~ell~~Il~~L----p~~~L~~r~~~VCk~Wr~l~~~   88 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAEL----PATELVQACRLVCLRWKELVDG   88 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTS----CHHHHHHTGGGTCHHHHHHHTS
T ss_pred             cChhhCCHHHHHHHHHcC----CHHHHHHHHHHHhHHHHHHhcC
Confidence            467899999999999999    999999 999999999999763

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.68  E-value=0.0037  Score=58.42  Aligned_cols=202  Identities=13%  Similarity=0.078  Sum_probs=111.9

Q ss_pred             ceeeeecCC--CcEEEecCCCcCCC-CeEEEcCCceEEEEecC-C--CCCCceeeeccCCCceEEEEcCCCCceeeCCCC
Q 041774           75 ISHLFDTTH--KLKYTIKTDPRVLH-SKIKASKDGWVLFSKAN-I--NPSPFLFISYNSSPSSLFFYNPFSASIIELPPL  148 (382)
Q Consensus        75 ~~~~~~~~~--~~~~~~~l~p~~~~-~~~~gs~~GwL~~~~~~-~--~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~  148 (382)
                      ....||+..  .+|..+...|...+ ...+...+|-|++.... .  .+..       ...+.+..+||.|.++..++++
T Consensus        32 ~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~-------~~~~~v~~yd~~~~~W~~~~~~  104 (357)
T 2uvk_A           32 AWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLT-------QVFNDVHKYNPKTNSWVKLMSH  104 (357)
T ss_dssp             CEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCE-------EECCCEEEEETTTTEEEECSCC
T ss_pred             eEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccc-------eeeccEEEEeCCCCcEEECCCC
Confidence            345688864  66776632241121 11223346777765332 0  0000       0135789999999999998876


Q ss_pred             c-ccCcceEEEcCCCCCCCeEEEEEEEeeCC------------------------------------CeEEEEEEecCCC
Q 041774          149 H-MFSSDKATFSTAPTSLFCTVFVLSVYYST------------------------------------RRICISTCKPGER  191 (382)
Q Consensus       149 ~-~~~~~~v~~s~~p~s~~~~v~~i~~~~~~------------------------------------~~~~i~~~r~gd~  191 (382)
                      . .......+...    .+ +++++.. ..+                                    ....+..|.+.++
T Consensus       105 ~p~~r~~~~~~~~----~~-~iyv~GG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~  178 (357)
T 2uvk_A          105 APMGMAGHVTFVH----NG-KAYVTGG-VNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQ  178 (357)
T ss_dssp             CSSCCSSEEEEEE----TT-EEEEEEC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTT
T ss_pred             CCcccccceEEEE----CC-EEEEEeC-cCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCC
Confidence            5 33332211111    12 2333332 110                                    0136778999999


Q ss_pred             ceEEeecCCccccc-ceEEEECCEEEEEee-------CCeEEEEEc--CCCCeEEeccCCCCCCcceeeceeEEEEeCCc
Q 041774          192 TWTRHFFDGFYGDL-HGLTYLRGVLYCSFC-------NNVLGAFRV--STNSWKIYPHNRIRPTSVYLYYGLIESEHEGS  261 (382)
Q Consensus       192 ~W~~~~~~~~~~~~-~d~v~~~G~~Y~l~~-------~g~l~~~d~--~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~  261 (382)
                      .|+.+..-..+... ..++..+|++|++..       ...+..||+  ...+|+.+...+. +..   .....++..+|+
T Consensus       179 ~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~-~~~---~~~~~~~~~~~~  254 (357)
T 2uvk_A          179 QWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSS-PDG---VAGGFAGISNDS  254 (357)
T ss_dssp             EEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSST-TTC---CBSCEEEEETTE
T ss_pred             cEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCC-Ccc---cccceEEEECCE
Confidence            99987421111223 567788999999852       346888887  6678988753221 110   022346778999


Q ss_pred             EEEEEEeCCC------------------ceEEEEEEEcCCCCEEEcccCC
Q 041774          262 LLSVYYDSHR------------------LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       262 LllV~~~~~~------------------~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      |+++.-....                  ....|+.+|.++.+|.++..+.
T Consensus       255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p  304 (357)
T 2uvk_A          255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS  304 (357)
T ss_dssp             EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS
T ss_pred             EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC
Confidence            9998754210                  1246778888899999997765

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.60  E-value=0.0032  Score=60.47  Aligned_cols=37  Identities=19%  Similarity=0.333  Sum_probs=34.7

Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774           18 SWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV   58 (382)
Q Consensus        18 ~Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~   58 (382)
                      ..+.||.|++..|+..|    +..|+++++.|||.|+.++.
T Consensus        18 ~~~~lp~e~~~~i~~~l----~~~~l~~~~~v~~~~~~~~~   54 (445)
T 2ovr_B           18 FISLLPKELALYVLSFL----EPKDLLQAAQTCRYWRILAE   54 (445)
T ss_dssp             TTTSSCHHHHHHHHTTS----CHHHHHHHTTSCHHHHHHHT
T ss_pred             hhHHCCHHHHHHHHHhC----CHHHHHHHHHHhHHHHhhcC
Confidence            57899999999999999    99999999999999998865

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.60  E-value=0.0029  Score=59.12  Aligned_cols=165  Identities=12%  Similarity=0.089  Sum_probs=97.4

Q ss_pred             CCceEEEEecCCCCCCceeeeccCCCceEEEEcCC--CCceeeCCCCc-ccCcc--eEEEcCCCCCCCeEEEEEEEe-e-
Q 041774          104 KDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPF--SASIIELPPLH-MFSSD--KATFSTAPTSLFCTVFVLSVY-Y-  176 (382)
Q Consensus       104 ~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~--T~~~i~LP~~~-~~~~~--~v~~s~~p~s~~~~v~~i~~~-~-  176 (382)
                      .+|.|++....             ....++.+||.  +.++..+|+++ ..+..  .+++.      +. +.++... . 
T Consensus        18 ~~~~iyv~GG~-------------~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~------~~-lyv~GG~~~~   77 (357)
T 2uvk_A           18 DNDTVYIGLGS-------------AGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFID------GN-LYVFGGIGKN   77 (357)
T ss_dssp             ETTEEEEECGG-------------GTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEET------TE-EEEECCEEEC
T ss_pred             ECCEEEEEeCc-------------CCCeEEEEccccCCCCeeECCCCCCCcCccceEEEEC------CE-EEEEcCCCCC
Confidence            37777776543             13578899997  48899998876 33332  22331      22 2222210 1 


Q ss_pred             -CC---CeEEEEEEecCCCceEEeecCC-cccccceEEEECCEEEEEee-------------------------------
Q 041774          177 -ST---RRICISTCKPGERTWTRHFFDG-FYGDLHGLTYLRGVLYCSFC-------------------------------  220 (382)
Q Consensus       177 -~~---~~~~i~~~r~gd~~W~~~~~~~-~~~~~~d~v~~~G~~Y~l~~-------------------------------  220 (382)
                       .+   ....+..|.+..++|+.+.... .+.....++..+|++|++..                               
T Consensus        78 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (357)
T 2uvk_A           78 SEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYF  157 (357)
T ss_dssp             TTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhc
Confidence             00   0124678899999999874221 22223345669999999963                               


Q ss_pred             ---------CCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC--c--eEEEEEEEcCCCCEE
Q 041774          221 ---------NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR--L--QWLVFRFDLIKENWV  287 (382)
Q Consensus       221 ---------~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~--~--~~~V~~ld~~~~~W~  287 (382)
                               ...+.+||+..++|+.+...+....     ...-++..+|+|+++.-....  .  .+.+|.+|.++.+|.
T Consensus       158 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~-----~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~  232 (357)
T 2uvk_A          158 DKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGT-----AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN  232 (357)
T ss_dssp             SSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCC-----BSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEE
T ss_pred             cccccccCCcccEEEEeCCCCcEEECCCCCCCCc-----ccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEE
Confidence                     1479999999999998853221111     223466678999888654321  1  344455555889999


Q ss_pred             EcccCC
Q 041774          288 EVNRLD  293 (382)
Q Consensus       288 ~v~~Lg  293 (382)
                      ++..+.
T Consensus       233 ~~~~~~  238 (357)
T 2uvk_A          233 KLAPVS  238 (357)
T ss_dssp             ECCCSS
T ss_pred             ecCCCC
Confidence            998773

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.56  E-value=0.023  Score=54.55  Aligned_cols=36  Identities=19%  Similarity=0.346  Sum_probs=33.5

Q ss_pred             CCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774           19 WSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV   58 (382)
Q Consensus        19 Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~   58 (382)
                      .+.||+||+..|+..|    +..|++++..|||.|+.++.
T Consensus        15 ~~~lp~~~~~~i~~~l----~~~~l~~~~~v~~~w~~~~~   50 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYL----QFEDIINSLGVSQNWNKIIR   50 (464)
T ss_dssp             HHHSCHHHHHHHHTTS----CHHHHHHHHTTCHHHHHHHT
T ss_pred             hHHCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHc
Confidence            5689999999999999    99999999999999998754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.30  E-value=0.078  Score=50.54  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=32.9

Q ss_pred             CCCCCHH----HHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774           19 WSNLPPD----IVNLIAENLYYYADYADQVRFRTICKSWQSTCV   58 (382)
Q Consensus        19 Ws~LP~d----lL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~   58 (382)
                      .+.||+|    |+..|+..|    +..|++++..|||.||.++.
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l----~~~~l~~~~~v~~~w~~~~~   50 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYL----DAKSLCAAELVCKEWYRVTS   50 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTC----CHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHCCcchHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHhc
Confidence            4579999    999999999    99999999999999998764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.25  E-value=0.014  Score=60.07  Aligned_cols=195  Identities=10%  Similarity=-0.002  Sum_probs=112.6

Q ss_pred             eeeecCCCcEEEecCC------CcC-CCCeEEEcC-CceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCC
Q 041774           77 HLFDTTHKLKYTIKTD------PRV-LHSKIKASK-DGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPL  148 (382)
Q Consensus        77 ~~~~~~~~~~~~~~l~------p~~-~~~~~~gs~-~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~  148 (382)
                      ..||+.+++|..+...      |.- ..+..+.-. +|-|++..+...+.        ...+.+.++||.|.++..++++
T Consensus       415 ~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~--------~~~~dv~~yd~~t~~W~~~~~~  486 (695)
T 2zwa_A          415 LQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPH--------QGLSDNWIFDMKTREWSMIKSL  486 (695)
T ss_dssp             EEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTT--------CBCCCCEEEETTTTEEEECCCC
T ss_pred             EEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCC--------CccccEEEEeCCCCcEEECCCC
Confidence            4678888888776520      221 123333322 77777775431110        0135789999999999999887


Q ss_pred             cccCcceEEEcCCCCCCCeEEEEEEEeeCCCeEEEEEEecCCCceEEeecCC-cc--cccceEEEEC---CEEEEEeeC-
Q 041774          149 HMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDG-FY--GDLHGLTYLR---GVLYCSFCN-  221 (382)
Q Consensus       149 ~~~~~~~v~~s~~p~s~~~~v~~i~~~~~~~~~~i~~~r~gd~~W~~~~~~~-~~--~~~~d~v~~~---G~~Y~l~~~-  221 (382)
                      +...+...+....   .+. ++++.. .++.. .+..|.+..+.|+.+.... ++  ......+.++   |++|++... 
T Consensus       487 p~~R~~h~~~~~~---~~~-iyv~GG-~~~~~-~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~  560 (695)
T 2zwa_A          487 SHTRFRHSACSLP---DGN-VLILGG-VTEGP-AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGF  560 (695)
T ss_dssp             SBCCBSCEEEECT---TSC-EEEECC-BCSSC-SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBC
T ss_pred             CCCcccceEEEEc---CCE-EEEECC-CCCCC-CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcC
Confidence            6544332221100   122 333332 12222 5778999999999985311 22  2223334445   899998632 


Q ss_pred             -------CeEEEEEcCCCC------eEEeccCCCCCCcceeeceeEEEEeC-CcEEEEEEeCCC----ceEEEEEEEcCC
Q 041774          222 -------NVLGAFRVSTNS------WKIYPHNRIRPTSVYLYYGLIESEHE-GSLLSVYYDSHR----LQWLVFRFDLIK  283 (382)
Q Consensus       222 -------g~l~~~d~~~~~------~~~~~~p~~~~~~~~~~~~~~LVe~~-G~LllV~~~~~~----~~~~V~~ld~~~  283 (382)
                             ..+.+||+...+      |+.+...+..+.     .....+..+ |+|+++......    ..-.|+.+|.++
T Consensus       561 ~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R-----~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          561 MDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR-----YGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             TTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC-----BSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             CCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc-----ccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence                   468999999888      777654111111     122345556 899888765321    134577888889


Q ss_pred             CCEEEcc
Q 041774          284 ENWVEVN  290 (382)
Q Consensus       284 ~~W~~v~  290 (382)
                      .+|..+.
T Consensus       636 ~~W~~~~  642 (695)
T 2zwa_A          636 ETLTSIP  642 (695)
T ss_dssp             TEEEECC
T ss_pred             CeEEEee
Confidence            9999653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.25  E-value=9.1e-05  Score=68.90  Aligned_cols=39  Identities=23%  Similarity=0.509  Sum_probs=36.1

Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774           16 TKSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV   58 (382)
Q Consensus        16 ~~~Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~   58 (382)
                      .+.|++||+|++..|+.+|    +..|+++++.|||+|+.++.
T Consensus         6 ~~~~~~LP~eil~~If~~L----~~~d~~~~~~vc~~W~~~~~   44 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCL----CLPELLKVSGVCKRWYRLAS   44 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTS----CHHHHHHTTSSCHHHHHHHT
T ss_pred             cCChhhCCHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHhc
Confidence            4689999999999999999    99999999999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.93  E-value=0.00013  Score=66.18  Aligned_cols=39  Identities=21%  Similarity=0.291  Sum_probs=35.8

Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhccccC
Q 041774           17 KSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVP   59 (382)
Q Consensus        17 ~~Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~~   59 (382)
                      ..+.+||.|++..|++.|    +..|+.++..|||.||.++..
T Consensus         3 ~~l~~LP~ei~l~IlsfL----~p~DL~~l~~vcr~Wr~la~D   41 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFL----SPHDLCQLGSTNHYWNETVRD   41 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTS----CHHHHHHHHTTCHHHHHHHTC
T ss_pred             chhHhCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHhcc
Confidence            356789999999999999    999999999999999999763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.51  E-value=0.00073  Score=67.80  Aligned_cols=36  Identities=17%  Similarity=0.415  Sum_probs=29.0

Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCC-chhhhhhhccCcchhcc
Q 041774           17 KSWSNLPPDIVNLIAENLYYYAD-YADQVRFRTICKSWQST   56 (382)
Q Consensus        17 ~~Ws~LP~dlL~~Il~rL~~~~~-~~d~~rfr~VCk~Wrs~   56 (382)
                      ..|++||+|+|..|+.+|    + ..|+.+++.|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L----~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFI----QLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTC----CCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhc----CCchhHHHHHHHHHHHHHh
Confidence            479999999999999999    7 99999999999999977

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.52  E-value=0.003  Score=63.25  Aligned_cols=35  Identities=14%  Similarity=0.355  Sum_probs=32.6

Q ss_pred             CCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhcc
Q 041774           19 WSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQST   56 (382)
Q Consensus        19 Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~   56 (382)
                      .++||+|++..|+.+|   ++..|+.+++.|||+|+.+
T Consensus        13 ~~~LPdeil~~I~~~L---~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYI---TDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCCGGGTHHHHHTTC---CCHHHHHHHTTSCHHHHHH
T ss_pred             cCCCCHHHHHHHHHhc---CCHHHHHHHHHHhHHHHHh
Confidence            3689999999999999   7799999999999999887

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.13  E-value=0.28  Score=50.28  Aligned_cols=102  Identities=11%  Similarity=0.048  Sum_probs=71.7

Q ss_pred             EEEEEecCCCceEEeecC----Ccc--cccceEEEE--CCEEEEEee-------CCeEEEEEcCCCCeEEeccCCCCCCc
Q 041774          182 CISTCKPGERTWTRHFFD----GFY--GDLHGLTYL--RGVLYCSFC-------NNVLGAFRVSTNSWKIYPHNRIRPTS  246 (382)
Q Consensus       182 ~i~~~r~gd~~W~~~~~~----~~~--~~~~d~v~~--~G~~Y~l~~-------~g~l~~~d~~~~~~~~~~~p~~~~~~  246 (382)
                      .+..|.+.++.|+.+..+    .++  .....++..  +|++|++..       ...+..||+...+|+.++..+. +. 
T Consensus       413 ~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~-~R-  490 (695)
T 2zwa_A          413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH-TR-  490 (695)
T ss_dssp             CEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB-CC-
T ss_pred             cEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC-Cc-
Confidence            466788899999998622    122  334556777  999999962       2358999999999998853321 11 


Q ss_pred             ceeeceeEEEE-eCCcEEEEEEeCCCceEEEEEEEcCCCCEEEccc
Q 041774          247 VYLYYGLIESE-HEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNR  291 (382)
Q Consensus       247 ~~~~~~~~LVe-~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~~  291 (382)
                          ...-.+. .+|.|+++...... . .|+.+|..+.+|.++..
T Consensus       491 ----~~h~~~~~~~~~iyv~GG~~~~-~-~v~~yd~~t~~W~~~~~  530 (695)
T 2zwa_A          491 ----FRHSACSLPDGNVLILGGVTEG-P-AMLLYNVTEEIFKDVTP  530 (695)
T ss_dssp             ----BSCEEEECTTSCEEEECCBCSS-C-SEEEEETTTTEEEECCC
T ss_pred             ----ccceEEEEcCCEEEEECCCCCC-C-CEEEEECCCCceEEccC
Confidence                2223444 48999998766544 3 88999999999999875

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=93.81  E-value=0.38  Score=48.78  Aligned_cols=103  Identities=10%  Similarity=0.075  Sum_probs=66.3

Q ss_pred             EEEEEEecCCCceEEeec-CCccccc-ceEE-EECCEEEEEee--CCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEE
Q 041774          181 ICISTCKPGERTWTRHFF-DGFYGDL-HGLT-YLRGVLYCSFC--NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIE  255 (382)
Q Consensus       181 ~~i~~~r~gd~~W~~~~~-~~~~~~~-~d~v-~~~G~~Y~l~~--~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~L  255 (382)
                      ..+..|.+..++|+.+.. +...... ..++ ..+|++|++..  ...+..||+..++|..++..+. +.     ...-.
T Consensus       219 ~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~-~R-----~~~s~  292 (656)
T 1k3i_A          219 TLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-AR-----GYQSS  292 (656)
T ss_dssp             EEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CC-----SSCEE
T ss_pred             EEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc-cc-----cccce
Confidence            357789999999998632 1111112 2233 46899999973  3479999999999998753221 11     12234


Q ss_pred             EEe-CCcEEEEEEeCC--CceEEEEEEEcCCCCEEEc
Q 041774          256 SEH-EGSLLSVYYDSH--RLQWLVFRFDLIKENWVEV  289 (382)
Q Consensus       256 Ve~-~G~LllV~~~~~--~~~~~V~~ld~~~~~W~~v  289 (382)
                      +.. +|+|+++.-...  ...-.++.+|.++.+|.++
T Consensus       293 ~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          293 ATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             EECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             EEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence            555 899999876322  1123466678888999997

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=93.54  E-value=0.61  Score=47.28  Aligned_cols=148  Identities=10%  Similarity=0.038  Sum_probs=83.6

Q ss_pred             eeeecCCCcEEEe-cCCCcCCCCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccC--c
Q 041774           77 HLFDTTHKLKYTI-KTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFS--S  153 (382)
Q Consensus        77 ~~~~~~~~~~~~~-~l~p~~~~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~--~  153 (382)
                      ..||+..++|..+ ++ |....+..+...+|-|++........   +-..+.....+.++||.|+++..++.++...  +
T Consensus       169 ~~~dp~~~~W~~~~~~-P~~~~~~av~~~~g~l~v~GG~~~~~---~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~  244 (656)
T 1k3i_A          169 TAPQPGLGRWGPTIDL-PIVPAAAAIEPTSGRVLMWSSYRNDA---FGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF  244 (656)
T ss_dssp             CCCCTTSCEEEEEEEC-SSCCSEEEEETTTTEEEEEEECCCTT---TCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS
T ss_pred             ccCCCCCCeeeeeccC-CCCceeEEEEecCCEEEEEecccccc---cccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCc
Confidence            4577878888754 34 55322222222267777664321000   0000001236789999999998887654321  1


Q ss_pred             c-eEEEcCCCCCCCeEEEEEEEeeCCCeEEEEEEecCCCceEEeecCCcc--cccceEEEE-CCEEEEEeeC-------C
Q 041774          154 D-KATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFY--GDLHGLTYL-RGVLYCSFCN-------N  222 (382)
Q Consensus       154 ~-~v~~s~~p~s~~~~v~~i~~~~~~~~~~i~~~r~gd~~W~~~~~~~~~--~~~~d~v~~-~G~~Y~l~~~-------g  222 (382)
                      . .+++..    .+ +++++.. ....  .+..|.+..+.|+.+.  .++  .....++.. +|++|++...       .
T Consensus       245 ~~~~~~~~----~g-~lyv~GG-~~~~--~v~~yd~~t~~W~~~~--~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~  314 (656)
T 1k3i_A          245 CPGISMDG----NG-QIVVTGG-NDAK--KTSLYDSSSDSWIPGP--DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEK  314 (656)
T ss_dssp             SCEEEECT----TS-CEEEECS-SSTT--CEEEEEGGGTEEEECC--CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCC
T ss_pred             cccccCCC----CC-CEEEeCC-CCCC--ceEEecCcCCceeECC--CCCccccccceEEecCCeEEEEeCcccCCcccc
Confidence            1 233322    12 2333332 1222  4678889999999873  332  334455666 9999999641       3


Q ss_pred             eEEEEEcCCCCeEEec
Q 041774          223 VLGAFRVSTNSWKIYP  238 (382)
Q Consensus       223 ~l~~~d~~~~~~~~~~  238 (382)
                      .+..||+..++|+.++
T Consensus       315 ~~e~yd~~t~~W~~~~  330 (656)
T 1k3i_A          315 NGEVYSPSSKTWTSLP  330 (656)
T ss_dssp             CEEEEETTTTEEEEET
T ss_pred             cceEeCCCCCcceeCC
Confidence            5899999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	382
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.84
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.85
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	97.85
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.38
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.24
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.96
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.23
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.34

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.5e-10  Score=69.81  Aligned_cols=36  Identities=22%  Similarity=0.557  Sum_probs=34.4

Q ss_pred             CCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774           19 WSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV   58 (382)
Q Consensus        19 Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~   58 (382)
                      |+.||+|++..|+.+|    +..|++|++.|||+|+.++.
T Consensus         1 f~~LP~eil~~If~~L----~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCL----CLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTS----CGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhC
Confidence            7899999999999999    99999999999999999865

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.9e-06  Score=64.36  Aligned_cols=38  Identities=18%  Similarity=0.318  Sum_probs=34.8

Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhccccC
Q 041774           18 SWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVP   59 (382)
Q Consensus        18 ~Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~~   59 (382)
                      .-+.||+||+..|+.+|    +..|+++++.|||.|+.++..
T Consensus        18 ~i~~LP~Eil~~Ils~L----d~~dL~~~~~vcr~w~~l~~~   55 (102)
T d2ovrb1          18 FISLLPKELALYVLSFL----EPKDLLQAAQTCRYWRILAED   55 (102)
T ss_dssp             TTTSSCHHHHHHHHTTS----CHHHHHHHTTSCHHHHHHHTC
T ss_pred             ChhhCCHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHCC
Confidence            34679999999999999    999999999999999999763

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=1.1e-06  Score=65.60  Aligned_cols=36  Identities=19%  Similarity=0.346  Sum_probs=33.3

Q ss_pred             CCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774           19 WSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV   58 (382)
Q Consensus        19 Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~   58 (382)
                      .++||+||+..|++.|    +..|+++++.|||+|+.++.
T Consensus         6 ~~~LP~Ell~~I~s~L----d~~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           6 ITSLPFEISLKIFNYL----QFEDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             HHHSCHHHHHHHHTTS----CHHHHHHHTTTCHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHH
Confidence            4679999999999999    99999999999999998753

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.018  Score=49.35  Aligned_cols=199  Identities=13%  Similarity=0.074  Sum_probs=111.1

Q ss_pred             eeeeecCCCcEEEecCCCcC-CCCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcc
Q 041774           76 SHLFDTTHKLKYTIKTDPRV-LHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSD  154 (382)
Q Consensus        76 ~~~~~~~~~~~~~~~l~p~~-~~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~  154 (382)
                      ...||+.+++|..+.-.|.- .++.. .+.+|-|++..... +...    -......+.++||.|..+..+|+++.....
T Consensus        21 ~~~yd~~t~~W~~~~~~p~~R~~~~~-~~~~~~iyv~GG~~-~~~~----~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~   94 (288)
T d1zgka1          21 LEAYNPSNGTWLRLADLQVPRSGLAG-CVVGGLLYAVGGRN-NSPD----GNTDSSALDCYNPMTNQWSPCAPMSVPRNR   94 (288)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEE-EEETTEEEEECCEE-EETT----EEEECCCEEEEETTTTEEEECCCCSSCCBT
T ss_pred             EEEEECCCCeEEECCCCCCccceeEE-EEECCEEEEEeCcc-cCCC----Cccccchhhhcccccccccccccccceecc
Confidence            45799999998877321432 12222 22355565553210 0000    000135788999999999999987654332


Q ss_pred             e--EEEcCCCCCCCeEEEEEEE-eeCCCeEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEe------eCCeEE
Q 041774          155 K--ATFSTAPTSLFCTVFVLSV-YYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSF------CNNVLG  225 (382)
Q Consensus       155 ~--v~~s~~p~s~~~~v~~i~~-~~~~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~------~~g~l~  225 (382)
                      .  +++      .+. +.++.. ...........+....+.|...............+..++++|++.      ....+.
T Consensus        95 ~~~~~~------~~~-i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~  167 (288)
T d1zgka1          95 IGVGVI------DGH-IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE  167 (288)
T ss_dssp             CEEEEE------TTE-EEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEE
T ss_pred             eecccc------cee-eEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEE
Confidence            2  222      122 222221 001001124467788889987643222223344567889999875      234688


Q ss_pred             EEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC-ceEEEEEEEcCCCCEEEcccCC
Q 041774          226 AFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR-LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       226 ~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      .+|+..++|.....++...      ...-.+..+|.+++..-.... ..-.+++.|..+.+|+++..+.
T Consensus       168 ~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p  230 (288)
T d1zgka1         168 CYYPERNEWRMITAMNTIR------SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK  230 (288)
T ss_dssp             EEETTTTEEEECCCCSSCC------BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred             Eeecccccccccccccccc------ccccccceeeeEEEecCccccccccceeeeeecceeeecccCcc
Confidence            8999888887765433211      222345567777776544332 2456677888889999987653

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.019  Score=49.20  Aligned_cols=196  Identities=13%  Similarity=0.091  Sum_probs=111.5

Q ss_pred             eeeecCCCcEEEecCCCcC-CCCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcce
Q 041774           77 HLFDTTHKLKYTIKTDPRV-LHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDK  155 (382)
Q Consensus        77 ~~~~~~~~~~~~~~l~p~~-~~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~  155 (382)
                      ..||+...++..+...|.- ..+.+ ...+|-+++..... +.        .........++.|..+...|.........
T Consensus        73 ~~yd~~~~~w~~~~~~p~~r~~~~~-~~~~~~i~~~gg~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  142 (288)
T d1zgka1          73 DCYNPMTNQWSPCAPMSVPRNRIGV-GVIDGHIYAVGGSH-GC--------IHHNSVERYEPERDEWHLVAPMLTRRIGV  142 (288)
T ss_dssp             EEEETTTTEEEECCCCSSCCBTCEE-EEETTEEEEECCEE-TT--------EECCCEEEEETTTTEEEECCCCSSCCBSC
T ss_pred             hhcccccccccccccccceecceec-cccceeeEEeccee-cc--------cccceeeeeccccCccccccccccccccc
Confidence            4689988888766431321 12222 22355555543210 00        01345677899999988877665432222


Q ss_pred             EEEcCCCCCCCeEEEEEEE-eeCCCeEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEee------CCeEEEEE
Q 041774          156 ATFSTAPTSLFCTVFVLSV-YYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFC------NNVLGAFR  228 (382)
Q Consensus       156 v~~s~~p~s~~~~v~~i~~-~~~~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~------~g~l~~~d  228 (382)
                      .+...    .+. +..+.. ........+..|.+..+.|...............+..+|++|++..      ...+..+|
T Consensus       143 ~~~~~----~~~-~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~  217 (288)
T d1zgka1         143 GVAVL----NRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYD  217 (288)
T ss_dssp             EEEEE----TTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred             eeeee----eec-ceEecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeee
Confidence            11111    011 121111 0111113456788888999976432222234456778999999851      23578899


Q ss_pred             cCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC-ceEEEEEEEcCCCCEEEcccCC
Q 041774          229 VSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR-LQWLVFRFDLIKENWVEVNRLD  293 (382)
Q Consensus       229 ~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg  293 (382)
                      ....+|..+...+. +.     ....++..+|+|+++.-.... ..-.||.+|.++++|.++..|.
T Consensus       218 ~~~~~~~~~~~~p~-~r-----~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  277 (288)
T d1zgka1         218 VETETWTFVAPMKH-RR-----SALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT  277 (288)
T ss_dssp             TTTTEEEECCCCSS-CC-----BSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred             ecceeeecccCccC-cc-----cceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCC
Confidence            98888988764332 21     233566779999998654332 2334677788889999998874

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=8.3e-05  Score=56.71  Aligned_cols=35  Identities=26%  Similarity=0.440  Sum_probs=31.6

Q ss_pred             CCCC----HHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774           20 SNLP----PDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV   58 (382)
Q Consensus        20 s~LP----~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~   58 (382)
                      +.||    +||+..|++.|    +..|++++..|||.|+.++.
T Consensus        12 ~~LP~~l~~EI~~~Ils~L----d~~dL~~~s~Vck~W~~l~~   50 (118)
T d1p22a1          12 TALPARGLDHIAENILSYL----DAKSLCAAELVCKEWYRVTS   50 (118)
T ss_dssp             HHTGGGTCHHHHHHHHTTC----CHHHHHHHHHHCHHHHHHHH
T ss_pred             HHCCCCChHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHc
Confidence            3466    59999999999    99999999999999999976

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.23  E-value=0.35  Score=42.58  Aligned_cols=106  Identities=9%  Similarity=0.020  Sum_probs=67.1

Q ss_pred             EEEEEEecCCCceEEeecCCcc---cccceEEEECCEEEEEee--CCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEE
Q 041774          181 ICISTCKPGERTWTRHFFDGFY---GDLHGLTYLRGVLYCSFC--NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIE  255 (382)
Q Consensus       181 ~~i~~~r~gd~~W~~~~~~~~~---~~~~d~v~~~G~~Y~l~~--~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~L  255 (382)
                      ..+.+|.+..+.|+.......+   ......+..+|++|+...  ...+.+||+..++|..++..+.. .    ....-.
T Consensus        52 ~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~-r----~~~~~~  126 (387)
T d1k3ia3          52 TLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-R----GYQSSA  126 (387)
T ss_dssp             EEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-C----SSCEEE
T ss_pred             eEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccccccccccc-c----ccccee
Confidence            4567899999999875321111   122345567999999863  34788999999999887543321 1    122223


Q ss_pred             EEeCCcEEEEEEeCCC--ceEEEEEEEcCCCCEEEccc
Q 041774          256 SEHEGSLLSVYYDSHR--LQWLVFRFDLIKENWVEVNR  291 (382)
Q Consensus       256 Ve~~G~LllV~~~~~~--~~~~V~~ld~~~~~W~~v~~  291 (382)
                      +-.+|+++++......  ..-.|+..|....+|..+..
T Consensus       127 ~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~  164 (387)
T d1k3ia3         127 TMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPN  164 (387)
T ss_dssp             ECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETT
T ss_pred             eecCCceeeeccccccccccceeeeecCCCCceeecCC
Confidence            3357898888764331  12346667888899998753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.34  E-value=1.7  Score=37.79  Aligned_cols=150  Identities=8%  Similarity=0.031  Sum_probs=81.2

Q ss_pred             eEEEEcCCCCceeeCCCCcccC--c-ceEEEcCCCCCCCeEEEEEEEeeCCCeEEEEEEecCCCceEEeecCCcccccce
Q 041774          131 SLFFYNPFSASIIELPPLHMFS--S-DKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFYGDLHG  207 (382)
Q Consensus       131 ~~~l~NP~T~~~i~LP~~~~~~--~-~~v~~s~~p~s~~~~v~~i~~~~~~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d  207 (382)
                      ...++||.|+++..+|.+....  + ..+++..    .. +++++.. ....  .+..|.+..+.|+.......+.....
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~----~g-~i~v~Gg-~~~~--~~~~yd~~~~~w~~~~~~~~~r~~~~  124 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG----NG-QIVVTGG-NDAK--KTSLYDSSSDSWIPGPDMQVARGYQS  124 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECT----TS-CEEEECS-SSTT--CEEEEEGGGTEEEECCCCSSCCSSCE
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEec----CC-cEEEeec-CCCc--ceeEecCccCcccccccccccccccc
Confidence            4678999999988776654321  1 1223321    12 2333322 1222  45688999999998732112222333


Q ss_pred             E-EEECCEEEEEeeC-------CeEEEEEcCCCCeEEeccCCCC----CC--ccee-eceeEE-EEeCCcEEEEEEeCCC
Q 041774          208 L-TYLRGVLYCSFCN-------NVLGAFRVSTNSWKIYPHNRIR----PT--SVYL-YYGLIE-SEHEGSLLSVYYDSHR  271 (382)
Q Consensus       208 ~-v~~~G~~Y~l~~~-------g~l~~~d~~~~~~~~~~~p~~~----~~--~~~~-~~~~~L-Ve~~G~LllV~~~~~~  271 (382)
                      . +..||++|++...       ..+..||+..++|..++.....    ..  .... ....++ +-.+|+++.....   
T Consensus       125 ~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~---  201 (387)
T d1k3ia3         125 SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS---  201 (387)
T ss_dssp             EEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS---
T ss_pred             eeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc---
Confidence            3 3458999998621       3588999999999987532111    00  0000 011222 2245666654321   


Q ss_pred             ceEEEEEEEcCCCCEEEcccC
Q 041774          272 LQWLVFRFDLIKENWVEVNRL  292 (382)
Q Consensus       272 ~~~~V~~ld~~~~~W~~v~~L  292 (382)
                       .-.++..+.....|.....+
T Consensus       202 -~~~~~~~~~~~~~~~~~~~~  221 (387)
T d1k3ia3         202 -TAMNWYYTSGSGDVKSAGKR  221 (387)
T ss_dssp             -SEEEEEECSTTCEEEEEEEC
T ss_pred             -CCcEEecCcccCcEeecccc
Confidence             34566677777777766443