Citrus Sinensis ID: 041778

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MASSSGTKKTRAPTPRRQSKAMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVANQIEKDNPRVAYL
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEEccccEEccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEc
Coil and Loop (DISEMBL)
masssgtkktraptprrqskaMSQAQKMFVDvqdedssaidselvpsslaaIAPVLRVANQiekdnprvayl
Flexible Loop (DISEMBL)
masssgtkktraptprrqskamsqAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVlrvanqiekdnprvayl
Low Complexity Region (SEG)
MASSSGTKKTRAPTPRRQSKAMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVANQIEKDNPRVAYL
Disordered region (IsUnstruct)
*************************************************AAIAPVLRV**************
Disordered Region (DISOPRED)
****************************************DSELVPSSLAAIAPVLRVANQIEKD*P*VAYL
Disordered Region (DISEMBL)
**************************KMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVANQIEKDNPRVAYL
Disordered Region (DISPRO)
*********************MSQAQKMFVDV**EDSSAIDSELVPSSLAAIAPVLRVANQIEKDNPRV*YL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSSGTKKTRAPTPRRQSKAMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVANQIEKDNPRVAYL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
Q9LYS6	1921	Putative callose synthase	yes	no	0.930	0.034	0.666	7e-18
Q9SHJ3	1958	Callose synthase 7 OS=Ara	no	no	0.986	0.036	0.5	1e-13
Q9AUE0	1950	Callose synthase 1 OS=Ara	no	no	0.833	0.030	0.453	2e-08
Q9SL03	1950	Callose synthase 2 OS=Ara	no	no	0.486	0.017	0.685	4e-08
Q9LXT9	1955	Callose synthase 3 OS=Ara	no	no	0.472	0.017	0.705	6e-08
Q3B724	1923	Callose synthase 5 OS=Ara	no	no	0.888	0.033	0.416	3e-06

>sp|Q9LYS6|CALS6_ARATH Putative callose synthase 6 OS=Arabidopsis thaliana GN=CALS6 PE=3 SV=2

 Score = 89.0 bits (219), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/72 (66%), Positives = 57/72 (79%), Gaps = 5/72 (6%)

Query: 2  ASSSGTKKTRAPTPRRQSK-AMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVAN 60
          ASSSGT    A  PR  S+ A S+A  M +D  +ED+SA+DSELVPSSLA+IAP+LRVAN
Sbjct: 3  ASSSGT----AELPRSLSRRAPSRATTMMIDRPNEDASAMDSELVPSSLASIAPILRVAN 58

Query: 61 QIEKDNPRVAYL 72
          +IEKDNPRVAYL
Sbjct: 59 EIEKDNPRVAYL 70

Probably involved in callose synthesis, but not required for callose formation after wounding or pathogen attack. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 3EC: 4

>sp|Q9SHJ3|CALS7_ARATH Callose synthase 7 OS=Arabidopsis thaliana GN=CALS7 PE=2 SV=3

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 5/76 (6%)

Query: 2  ASSSGTKKTRAPTPRRQ-----SKAMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVL 56
          ++SSG +      P+ Q     S+ M++A  M ++  +ED   IDSELVPSSLA+IAP+L
Sbjct: 3  STSSGGRGEDGRPPQMQPVRSMSRKMTRAGTMMIEHPNEDERPIDSELVPSSLASIAPIL 62

Query: 57 RVANQIEKDNPRVAYL 72
          RVAN I++DN RVAYL
Sbjct: 63 RVANDIDQDNARVAYL 78

Involved in callose synthesis at the forming cell plate during cytokinesis. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: 4

>sp|Q9AUE0|CALS1_ARATH Callose synthase 1 OS=Arabidopsis thaliana GN=CALS1 PE=1 SV=2

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 9  KTRAPTPRRQSKAMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVANQIEKDNPR 68
          + R P P    + + + Q     V     + +DSE+VPSSL  IAP+LRVAN++E  NPR
Sbjct: 3  QRREPDPPPPQRRILRTQT----VGSLGEAMLDSEVVPSSLVEIAPILRVANEVEASNPR 58

Query: 69 VAYL 72
          VAYL
Sbjct: 59 VAYL 62

Involved in callose synthesis at the forming cell plate during cytokinesis. Not required for callose formation after wounding or pathogen attack. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: 4

>sp|Q9SL03|CALS2_ARATH Callose synthase 2 OS=Arabidopsis thaliana GN=CALS2 PE=2 SV=3

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/35 (68%), Positives = 30/35 (85%)

Query: 38 SAIDSELVPSSLAAIAPVLRVANQIEKDNPRVAYL 72
          + +DSE+VPSSL  IAP+LRVAN++E  NPRVAYL
Sbjct: 28 AMLDSEVVPSSLVEIAPILRVANEVEASNPRVAYL 62

Involved in callose synthesis at the forming cell plate during cytokinesis. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: 4

>sp|Q9LXT9|CALS3_ARATH Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=3

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/34 (70%), Positives = 29/34 (85%)

Query: 39 AIDSELVPSSLAAIAPVLRVANQIEKDNPRVAYL 72
          + DSE+VPSSL  IAP+LRVAN++E  NPRVAYL
Sbjct: 32 SFDSEVVPSSLVEIAPILRVANEVESSNPRVAYL 65

Involved in callose synthesis at the forming cell plate during cytokinesis. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: 4

>sp|Q3B724|CALS5_ARATH Callose synthase 5 OS=Arabidopsis thaliana GN=CALS5 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 1  MASSSGTKKTRAPTPRRQSKAMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVAN 60
          MA SS T     P    +  + S A  + ++V        D E+VP+SL  IAP+LRVA 
Sbjct: 1  MAQSS-TSHDSGPQGLMRRPSRSAATTVSIEV-------FDHEVVPASLGTIAPILRVAA 52

Query: 61 QIEKDNPRVAYL 72
          +IE + PRVAYL
Sbjct: 53 EIEHERPRVAYL 64

Required for the formation of the callose wall separating the tetraspores (interstitial wall) and surrounding the pollen mother cells (pheripheral wall). Required for exine formation on pollen wall. May be involved in callose synthesis during pollen tube growth. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
224062688	1940	predicted protein [Populus trichocarpa]	1.0	0.037	0.666	3e-21
224085364	1944	predicted protein [Populus trichocarpa]	0.986	0.036	0.666	9e-19
255571406	1911	transferase, transferring glycosyl group	1.0	0.037	0.630	5e-18
297843450	1937	hypothetical protein ARALYDRAFT_470669 [	1.0	0.037	0.584	3e-16
334186113	1921	callose synthase [Arabidopsis thaliana]	0.930	0.034	0.666	3e-16
7529753	1808	putative protein [Arabidopsis thaliana]	0.930	0.037	0.666	6e-16
297817212	1934	hypothetical protein ARALYDRAFT_907409 [	0.930	0.034	0.652	9e-16
449492564	1930	PREDICTED: LOW QUALITY PROTEIN: callose	0.972	0.036	0.611	4e-15
449444250	1945	PREDICTED: callose synthase 7-like [Cucu	0.972	0.035	0.611	5e-15
6692688	1930	F12K11.17 [Arabidopsis thaliana]	0.986	0.036	0.5	4e-12

>gi|224062688|ref|XP_002300874.1| predicted protein [Populus trichocarpa] gi|222842600|gb|EEE80147.1| predicted protein [Populus trichocarpa]

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/72 (66%), Positives = 59/72 (81%)

Query: 1  MASSSGTKKTRAPTPRRQSKAMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVAN 60
          MASSSGTK    P PR  S+ M++A  M +D+ DED++++DSELVPSSLA IAP+LRVAN
Sbjct: 1  MASSSGTKNDTGPAPRSLSRRMTRAPTMMLDLPDEDNASVDSELVPSSLAGIAPILRVAN 60

Query: 61 QIEKDNPRVAYL 72
          +IEKDNPRVAYL
Sbjct: 61 EIEKDNPRVAYL 72

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085364|ref|XP_002307554.1| predicted protein [Populus trichocarpa] gi|222857003|gb|EEE94550.1| predicted protein [Populus trichocarpa]

 Score = 97.4 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/72 (66%), Positives = 56/72 (77%), Gaps = 1/72 (1%)

Query: 1  MASSSGTKKTRAPTPRRQSKAMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVAN 60
          MASSSGTK    P PR  S+ M +AQ M +D+ DEDS  +DSE VPSSLA IAP+LRVAN
Sbjct: 1  MASSSGTKNEGGP-PRSLSRRMMRAQTMVLDLADEDSPLVDSEAVPSSLALIAPILRVAN 59

Query: 61 QIEKDNPRVAYL 72
          +IEK+NPRVAYL
Sbjct: 60 EIEKENPRVAYL 71

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571406|ref|XP_002526651.1| transferase, transferring glycosyl groups, putative [Ricinus communis] gi|223534018|gb|EEF35739.1| transferase, transferring glycosyl groups, putative [Ricinus communis]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 1/73 (1%)

Query: 1  MASSSGTKKTRAPTPRRQ-SKAMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVA 59
          MASSSGTK      P R  S+ M++AQ M VD+QDED+S +DSELVPSS++ I P+LRVA
Sbjct: 1  MASSSGTKNGGGGLPPRSLSRKMTRAQTMMVDLQDEDASVLDSELVPSSMSEIVPILRVA 60

Query: 60 NQIEKDNPRVAYL 72
          N++EKDN RVAYL
Sbjct: 61 NEVEKDNRRVAYL 73

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843450|ref|XP_002889606.1| hypothetical protein ARALYDRAFT_470669 [Arabidopsis lyrata subsp. lyrata] gi|297335448|gb|EFH65865.1| hypothetical protein ARALYDRAFT_470669 [Arabidopsis lyrata subsp. lyrata]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/77 (58%), Positives = 56/77 (72%), Gaps = 5/77 (6%)

Query: 1  MASSSGTKKTRAPTPRRQ-----SKAMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPV 55
          MAS+SG +      P+ Q     S+ M++A  M +D  +ED SAIDSELVPSSLA+IAP+
Sbjct: 1  MASTSGGRAEDGRPPQMQPVRSMSRRMTRAGTMMIDHPNEDESAIDSELVPSSLASIAPI 60

Query: 56 LRVANQIEKDNPRVAYL 72
          LRVAN IE+DNPRVAYL
Sbjct: 61 LRVANDIEEDNPRVAYL 77

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186113|ref|NP_191469.3| callose synthase [Arabidopsis thaliana] gi|189081840|sp|Q9LYS6.2|CALS6_ARATH RecName: Full=Putative callose synthase 6; AltName: Full=1,3-beta-glucan synthase; AltName: Full=Protein GLUCAN SYNTHASE-LIKE 11 gi|332646357|gb|AEE79878.1| callose synthase [Arabidopsis thaliana]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/72 (66%), Positives = 57/72 (79%), Gaps = 5/72 (6%)

Query: 2  ASSSGTKKTRAPTPRRQSK-AMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVAN 60
          ASSSGT    A  PR  S+ A S+A  M +D  +ED+SA+DSELVPSSLA+IAP+LRVAN
Sbjct: 3  ASSSGT----AELPRSLSRRAPSRATTMMIDRPNEDASAMDSELVPSSLASIAPILRVAN 58

Query: 61 QIEKDNPRVAYL 72
          +IEKDNPRVAYL
Sbjct: 59 EIEKDNPRVAYL 70

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7529753|emb|CAB86938.1| putative protein [Arabidopsis thaliana]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/72 (66%), Positives = 57/72 (79%), Gaps = 5/72 (6%)

Query: 2  ASSSGTKKTRAPTPRRQSK-AMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVAN 60
          ASSSGT    A  PR  S+ A S+A  M +D  +ED+SA+DSELVPSSLA+IAP+LRVAN
Sbjct: 3  ASSSGT----AELPRSLSRRAPSRATTMMIDRPNEDASAMDSELVPSSLASIAPILRVAN 58

Query: 61 QIEKDNPRVAYL 72
          +IEKDNPRVAYL
Sbjct: 59 EIEKDNPRVAYL 70

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817212|ref|XP_002876489.1| hypothetical protein ARALYDRAFT_907409 [Arabidopsis lyrata subsp. lyrata] gi|297322327|gb|EFH52748.1| hypothetical protein ARALYDRAFT_907409 [Arabidopsis lyrata subsp. lyrata]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/72 (65%), Positives = 57/72 (79%), Gaps = 5/72 (6%)

Query: 2  ASSSGTKKTRAPTPRRQSK-AMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVAN 60
          ASSSGT    A  PR  S+ A S+A  M +D  +ED+SA+DSELVPSSLA+IAP+LRVAN
Sbjct: 3  ASSSGT----AELPRSLSRRAPSRATTMMIDRPNEDASAMDSELVPSSLASIAPILRVAN 58

Query: 61 QIEKDNPRVAYL 72
          +IEK+NPRVAYL
Sbjct: 59 EIEKENPRVAYL 70

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492564|ref|XP_004159034.1| PREDICTED: LOW QUALITY PROTEIN: callose synthase 7-like [Cucumis sativus]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 55/72 (76%), Gaps = 2/72 (2%)

Query: 1  MASSSGTKKTRAPTPRRQSKAMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVAN 60
          MASSSG+K    P PR  S+ M++     V++  ED+S IDSELVPSSLA+IAP+LRVAN
Sbjct: 1  MASSSGSKNEVGP-PRSLSRRMTRTPTRMVELP-EDNSGIDSELVPSSLASIAPILRVAN 58

Query: 61 QIEKDNPRVAYL 72
          +IE +NPRVAYL
Sbjct: 59 EIEPENPRVAYL 70

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444250|ref|XP_004139888.1| PREDICTED: callose synthase 7-like [Cucumis sativus]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 55/72 (76%), Gaps = 2/72 (2%)

Query: 1  MASSSGTKKTRAPTPRRQSKAMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVAN 60
          MASSSG+K    P PR  S+ M++     V++  ED+S IDSELVPSSLA+IAP+LRVAN
Sbjct: 1  MASSSGSKNEVGP-PRSLSRRMTRTPTRMVELP-EDNSGIDSELVPSSLASIAPILRVAN 58

Query: 61 QIEKDNPRVAYL 72
          +IE +NPRVAYL
Sbjct: 59 EIEPENPRVAYL 70

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6692688|gb|AAF24822.1|AC007592_15 F12K11.17 [Arabidopsis thaliana]

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 5/76 (6%)

Query: 2  ASSSGTKKTRAPTPRRQ-----SKAMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVL 56
          ++SSG +      P+ Q     S+ M++A  M ++  +ED   IDSELVPSSLA+IAP+L
Sbjct: 3  STSSGGRGEDGRPPQMQPVRSMSRKMTRAGTMMIEHPNEDERPIDSELVPSSLASIAPIL 62

Query: 57 RVANQIEKDNPRVAYL 72
          RVAN I++DN RVAYL
Sbjct: 63 RVANDIDQDNARVAYL 78

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
TAIR|locus:2031938	1950	CALS1 "callose synthase 1" [Ar	0.458	0.016	0.727	1.4e-06
TAIR|locus:2040456	1923	CALS5 "callose synthase 5" [Ar	0.888	0.033	0.416	0.00011

TAIR|locus:2031938 CALS1 "callose synthase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)

Query:    40 IDSELVPSSLAAIAPVLRVANQIEKDNPRVAYL 72
             +DSE+VPSSL  IAP+LRVAN++E  NPRVAYL
Sbjct:    30 LDSEVVPSSLVEIAPILRVANEVEASNPRVAYL 62

GO:0000148 "1,3-beta-D-glucan synthase complex" evidence=IEA;ISS

GO:0003843 "1,3-beta-D-glucan synthase activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006075 "(1->3)-beta-D-glucan biosynthetic process" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0009504 "cell plate" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2040456 CALS5 "callose synthase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 0.00011, P = 0.00011
 Identities = 30/72 (41%), Positives = 40/72 (55%)

Query:     1 MASSSGTKKTRAPTPRRQSKAMSQAQKMFVDVQDEDSSAIDSELVPSSLAAIAPVLRVAN 60
             MA SS T     P    +  + S A  + ++V        D E+VP+SL  IAP+LRVA 
Sbjct:     1 MAQSS-TSHDSGPQGLMRRPSRSAATTVSIEV-------FDHEVVPASLGTIAPILRVAA 52

Query:    61 QIEKDNPRVAYL 72
             +IE + PRVAYL
Sbjct:    53 EIEHERPRVAYL 64


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.120   0.308    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       72        72   0.00091  102 3  10 23  0.36    29
                                                     29  0.43    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  462 (49 KB)
  Total size of DFA:  91 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.73u 0.21s 12.94t   Elapsed:  00:00:01
  Total cpu time:  12.73u 0.21s 12.94t   Elapsed:  00:00:01
  Start:  Sat May 11 04:57:32 2013   End:  Sat May 11 04:57:33 2013

GO:0000148 "1,3-beta-D-glucan synthase complex" evidence=IEA;ISS

GO:0003843 "1,3-beta-D-glucan synthase activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006075 "(1->3)-beta-D-glucan biosynthetic process" evidence=IEA;ISS;IMP

GO:0016020 "membrane" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010208 "pollen wall assembly" evidence=IMP

GO:0009846 "pollen germination" evidence=IMP

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0080092 "regulation of pollen tube growth" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0010584 "pollen exine formation" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
KOG0916	1679	consensus 1,3-beta-glucan synthase/callose synthas	98.23

>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]

Probab=98.23  E-value=4.9e-07  Score=80.94  Aligned_cols=48  Identities=50%  Similarity=0.657  Sum_probs=38.6

Q ss_pred             hhhhhhcccCCCCCCcCCcccccccch-hhhhHHhhhcccccCCCccccC
Q 041778           24 QAQKMFVDVQDEDSSAIDSELVPSSLA-AIAPVLRVANQIEKDNPRVAYL   72 (72)
Q Consensus        24 r~~t~~v~~~~~~~~~~dSE~vPssl~-~I~piLRvAneiE~~~PRVAyL   72 (72)
                      |+.+++++.++.+ +.+|++.+|+++. +|+||||+||+||.+|||+|||
T Consensus        11 ~~~~~~~~~~~~~-~~~~~~~~~~s~~~~i~pilr~a~~i~~~~p~~a~l   59 (1679)
T KOG0916|consen   11 RSDDQTIYDGYEY-ESYDSSGLPSSLYDDIAPILRVANEIEQQNPRVAYL   59 (1679)
T ss_pred             hcchhhhccCCCC-CCCCcccCCcccccccchhhhccccccccCchhhhc
Confidence            3344444555655 5888888888888 5999999999999999999996

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
2lxl_A	183	Vacuolar protein sorting-associated protein VTA1;	97.99
2rkk_A	168	Vacuolar protein sorting-associated protein VTA1;	85.05

>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A

Probab=97.99  E-value=4.6e-07  Score=63.61  Aligned_cols=32  Identities=31%  Similarity=0.488  Sum_probs=29.1

Q ss_pred             CcccccccchhhhhHHhhhcccccCCCccccC
Q 041778           41 DSELVPSSLAAIAPVLRVANQIEKDNPRVAYL   72 (72)
Q Consensus        41 dSE~vPssl~~I~piLRvAneiE~~~PRVAyL   72 (72)
                      +=..||++|..|.||||.|+|+|..+|+|||+
T Consensus         6 ~l~~vP~~LK~I~p~L~~A~Ele~~~PvVaY~   37 (183)
T 2lxl_A            6 PLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYY   37 (183)
T ss_dssp             CCCCCCGGGSSSHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCCCCChhHHhHHHHHHHHHHHhhcccHHHHH
Confidence            34479999999999999999999999999994

>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}

Probab=85.05  E-value=0.11  Score=36.31  Aligned_cols=21  Identities=24%  Similarity=0.279  Sum_probs=20.0

Q ss_pred             hhhhHHhhhcccccC-CCcccc
Q 041778           51 AIAPVLRVANQIEKD-NPRVAY   71 (72)
Q Consensus        51 ~I~piLRvAneiE~~-~PRVAy   71 (72)
                      .|.|+|+-|+|+|.. +|-|||
T Consensus         5 ~i~p~l~rA~Ele~~~~PvVaY   26 (168)
T 2rkk_A            5 NAARVVATAKDFDKVGLGIIGY   26 (168)
T ss_dssp             HHHHHHHHHHHHHHTTBHHHHH
T ss_pred             hHHHHHHHHHHHHhccCcchhH
Confidence            689999999999999 999998

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00