Citrus Sinensis ID: 041798

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530----
MIKQILGKLPRKPSKSTNNESNGESLNSTQVPNSINSSKANLLSSKSVNSGSRLNNGTLAPTTKSNQGKKSAPTATQVGSLLNSSVYEALPSFKDVPSAEKPNLFIRKLNMCCVIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTSSNSDNKGLDMYDPEEEEPAMEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRAVSNEAVLVSKFIYSVAVAPSTSPRATAIS
cHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
cHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
MIKQIlgklprkpskstnnesngeslnstqvpnsinsskanllssksvnsgsrlnngtlapttksnqgkksaptatqvGSLLNSSvyealpsfkdvpsaekpnlfIRKLNMCCvifdfndpaknlkekdikRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRtftssnsdnkgldmydpeeeepamepawpHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIIngfalplkeEHKLFLVRAliplhkpkcvsmyHQQLSYCITQFVEKDFKLADTVIRGLLkywpltnsskeVMFLGELEEVLEATQAAEFQRCMVPLFRQigrclnssHFQVAERALFLWNNDHIRNLINlnrkvilpiifpalerntrghWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRAVSNEAVLVSKFIYSVavapstspratais
mikqilgklprkpskstnnesngeslnstqvpnsINSSKANLLSSKSVNSGSRLNNGTlapttksnqgkksaPTATQVGSLLNSSVYEALPSFKDVPSAEKPNLFIRKLNMCCVIFDFndpaknlkekdiKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRtftssnsdnkglDMYDPEEEEPAMEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRlldlfdsedqREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEdemkeketqekrestwkRLEDLAASRAVSNEAVLVSKFIysvavapstspratais
MIKQILGKLPRKPSKSTNNESNGESLNSTQVPnsinsskanllssksvnsGSRLNNGTLAPTTKSNQGKKSAPTATQVGSLLNSSVYEALPSFKDVPSAEKPNLFIRKLNMCCVIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTSSNSDNKGLDMYDpeeeepamepawpHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRAVSNEAVLVSKFIYSVAVAPSTSPRATAIS
****************************************************************************************************KPNLFIRKLNMCCVIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFT***********************AWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARF****************************AVSNEAVLVSKFIYSVAV************
*IK*******************************************************************************************DVPSAEKPNLFIRKLNMCCVIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTSSNS**KG**MYDPEEEEPAMEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDE**********************WK***************************************
MIKQILGKLP*********************PNSINSSKANLLSSKSVNSGSRLNNGTLAP**************TQVGSLLNSSVYEALPSFKDVPSAEKPNLFIRKLNMCCVIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTSSNSDNKGLDMY********MEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQED**************WKRLEDLAASRAVSNEAVLVSKFIYSVAVAP**********
**************************************************************************************YEALPSFKDVPSAEKPNLFIRKLNMCCVIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTSS*********YDP**EEPAMEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASR******************************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIKQILGKLPRKPSKSTNNESNGESLNSTQVPNSINSSKANLLSSKSVNSGSRLNNGTLAPTTKSNQGKKSAPTATQVGSLLNSSVYEALPSFKDVPSAEKPNLFIRKLNMCCVIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTSSNSDNKGLDMYDPEEEEPAMEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRAVSNEAVLVSKFIYSVAVAPSTSPRATAIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query534 2.2.26 [Sep-21-2011]
Q8RW96522 Serine/threonine protein yes no 0.958 0.980 0.756 0.0
Q9LVE2546 Serine/threonine protein no no 0.973 0.952 0.754 0.0
Q9LU89510 Serine/threonine protein no no 0.930 0.974 0.686 0.0
Q8LF36492 Serine/threonine protein no no 0.823 0.894 0.740 0.0
O04376499 Serine/threonine protein no no 0.910 0.973 0.619 1e-178
O04375495 Serine/threonine protein no no 0.910 0.981 0.587 1e-172
Q9ZQY6477 Serine/threonine protein no no 0.887 0.993 0.585 1e-172
Q93YV6500 Serine/threonine protein no no 0.932 0.996 0.553 1e-169
Q9SV41497 Serine/threonine protein no no 0.853 0.917 0.590 1e-154
Q14738602 Serine/threonine-protein yes no 0.919 0.815 0.493 1e-139
>sp|Q8RW96|2A5G_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2 Back     alignment and function desciption
 Score =  818 bits (2112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/526 (75%), Positives = 454/526 (86%), Gaps = 14/526 (2%)

Query: 1   MIKQILGKLPRKPSKSTNNESN--GES-LNSTQVPNSINSSKANLLSSKSVNSGSRLNNG 57
           MIKQI GKLPRKPSKS++N+SN  GE  +NS  +PNS  SS +   S  S ++ +  N  
Sbjct: 1   MIKQIFGKLPRKPSKSSHNDSNPNGEGGVNSYYIPNSGISSISKPSSKSSASNSNGANGT 60

Query: 58  TLAPTTKSNQGKKSAPTATQVGSLLNSSVYEALPSFKDVPSAEKPNLFIRKLNMCCVIFD 117
            +AP++ S+          QV     + VYEALPSF+DVP++EKPNLFI+KL+MCCV+FD
Sbjct: 61  VIAPSSTSSN------RTNQV-----NGVYEALPSFRDVPTSEKPNLFIKKLSMCCVVFD 109

Query: 118 FNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTSSNSDNK 177
           FNDP+KNL+EK+IKRQTLLELVDY+++V++K ++ AMQEI K+  VNLFRTF S+N ++K
Sbjct: 110 FNDPSKNLREKEIKRQTLLELVDYIATVSTKLSDAAMQEIAKVAVVNLFRTFPSANHESK 169

Query: 178 GLDMYDPEEEEPAMEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDS 237
            L+  D ++EEPA+EPAWPHLQVVYE+LLRFVASP TDAKLAKRYIDHSFVL+LLDLFDS
Sbjct: 170 ILETLDVDDEEPALEPAWPHLQVVYELLLRFVASPMTDAKLAKRYIDHSFVLKLLDLFDS 229

Query: 238 EDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIIN 297
           EDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIIN
Sbjct: 230 EDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIIN 289

Query: 298 GFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYW 357
           GFALPLKEEHKLFL+RALIPLH+PKC S YHQQLSYCI QFVEKDFKLADTVIRGLLKYW
Sbjct: 290 GFALPLKEEHKLFLIRALIPLHRPKCASAYHQQLSYCIVQFVEKDFKLADTVIRGLLKYW 349

Query: 358 PLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNND 417
           P+TNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQI RCLNSSHFQVAERALFLWNND
Sbjct: 350 PVTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNND 409

Query: 418 HIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQ 477
           HIRNLI  N KVI+PI+FPA+ERNTRGHWNQAVQSLTLNVRK+ ++ DQ LFDECLA+FQ
Sbjct: 410 HIRNLITQNHKVIMPIVFPAMERNTRGHWNQAVQSLTLNVRKVMAETDQILFDECLAKFQ 469

Query: 478 EDEMKEKETQEKRESTWKRLEDLAASRAVSNEAVLVSKFIYSVAVA 523
           EDE  E E   KRE+TWK LE+LAAS++VSNEAVLV +F  SV +A
Sbjct: 470 EDEANETEVVAKREATWKLLEELAASKSVSNEAVLVPRFSSSVTLA 515
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LVE2|2A5Z_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana GN=B'ZETA PE=2 SV=2 Back     alignment and function description
>sp|Q9LU89|2A5N_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1 Back     alignment and function description
>sp|Q8LF36|2A5T_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform OS=Arabidopsis thaliana GN=B'THETA PE=2 SV=2 Back     alignment and function description
>sp|O04376|2A5B_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1 Back     alignment and function description
>sp|O04375|2A5A_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1 Back     alignment and function description
>sp|Q9ZQY6|2A5D_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform OS=Arabidopsis thaliana GN=B'DELTA PE=1 SV=1 Back     alignment and function description
>sp|Q93YV6|2A5I_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1 Back     alignment and function description
>sp|Q9SV41|2A5E_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform OS=Arabidopsis thaliana GN=B'EPSILON PE=2 SV=1 Back     alignment and function description
>sp|Q14738|2A5D_HUMAN Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Homo sapiens GN=PPP2R5D PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query534
255568687544 protein phosphatase 2a, regulatory subun 1.0 0.981 0.834 0.0
224131654510 predicted protein [Populus trichocarpa] 0.955 1.0 0.818 0.0
118487462541 unknown [Populus trichocarpa] 0.990 0.977 0.809 0.0
224064922514 predicted protein [Populus trichocarpa] 0.958 0.996 0.802 0.0
147773159548 hypothetical protein VITISV_022158 [Viti 0.994 0.968 0.824 0.0
356501292537 PREDICTED: serine/threonine protein phos 0.988 0.983 0.775 0.0
356554460536 PREDICTED: serine/threonine protein phos 0.986 0.983 0.769 0.0
297804714 948 hypothetical protein ARALYDRAFT_329973 [ 0.930 0.524 0.757 0.0
11994401518 protein phosphatase 2A B' regulatory sub 0.930 0.959 0.754 0.0
18414444522 protein phosphatase 2 (formerly 2A), reg 0.958 0.980 0.756 0.0
>gi|255568687|ref|XP_002525315.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] gi|223535374|gb|EEF37048.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/544 (83%), Positives = 493/544 (90%), Gaps = 10/544 (1%)

Query: 1   MIKQILGKLPRKPSKSTNNESNGE-------SLNSTQVPNSINSSKANLLSSKSV---NS 50
           MIKQILGKLPRKPSKS+N +S+ +       SLN +  PNS+N+SK++ +SSKS    + 
Sbjct: 1   MIKQILGKLPRKPSKSSNIDSSNDGGVNAYSSLNPSHGPNSVNNSKSSSISSKSSNLGSG 60

Query: 51  GSRLNNGTLAPTTKSNQGKKSAPTATQVGSLLNSSVYEALPSFKDVPSAEKPNLFIRKLN 110
           GSR NNG+LA   KSN GKKSAP   QVG +L S  YEALPSF++VPS+EK NLF+RKLN
Sbjct: 61  GSRTNNGSLASQNKSNPGKKSAPGVGQVGPMLASGAYEALPSFREVPSSEKQNLFLRKLN 120

Query: 111 MCCVIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFT 170
           MCCV+FDF+ P+KN KEKDIKRQTLLELVDY+SSVTSKFNEV MQEITKMVA+NLFRT  
Sbjct: 121 MCCVVFDFSAPSKNHKEKDIKRQTLLELVDYISSVTSKFNEVTMQEITKMVAINLFRTLP 180

Query: 171 SSNSDNKGLDMYDPEEEEPAMEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLR 230
           S+N DNK L+M+DPEE+EPAMEPAWPHLQ+VYE LLRFVAS ETDAKLAKRY+DHSFVLR
Sbjct: 181 SANHDNKILEMFDPEEDEPAMEPAWPHLQIVYEFLLRFVASTETDAKLAKRYVDHSFVLR 240

Query: 231 LLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLE 290
           LLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETE+HNGIAELLE
Sbjct: 241 LLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAELLE 300

Query: 291 ILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVI 350
           ILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVI
Sbjct: 301 ILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVI 360

Query: 351 RGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERA 410
           RGLLKYWP+TNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERA
Sbjct: 361 RGLLKYWPITNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERA 420

Query: 411 LFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFD 470
           LFLWNNDHIRNLI  NRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQ LFD
Sbjct: 421 LFLWNNDHIRNLITQNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQELFD 480

Query: 471 ECLARFQEDEMKEKETQEKRESTWKRLEDLAASRAVSNEAVLVSKFIYSVAVAPSTSPRA 530
           ECL +FQEDE+KE+E QEKRES WKRLED+AAS+A+SNEAVLVS+F+ SVA+   TSPRA
Sbjct: 481 ECLVKFQEDEIKEREVQEKRESKWKRLEDVAASKAISNEAVLVSRFVSSVAITSGTSPRA 540

Query: 531 TAIS 534
           TA S
Sbjct: 541 TAAS 544

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224131654|ref|XP_002321144.1| predicted protein [Populus trichocarpa] gi|222861917|gb|EEE99459.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118487462|gb|ABK95558.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224064922|ref|XP_002301608.1| predicted protein [Populus trichocarpa] gi|222843334|gb|EEE80881.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147773159|emb|CAN75915.1| hypothetical protein VITISV_022158 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356501292|ref|XP_003519459.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|356554460|ref|XP_003545564.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|297804714|ref|XP_002870241.1| hypothetical protein ARALYDRAFT_329973 [Arabidopsis lyrata subsp. lyrata] gi|297316077|gb|EFH46500.1| hypothetical protein ARALYDRAFT_329973 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|11994401|dbj|BAB02360.1| protein phosphatase 2A B' regulatory subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18414444|ref|NP_567464.1| protein phosphatase 2 (formerly 2A), regulatory subunit B' [Arabidopsis thaliana] gi|30683249|ref|NP_849390.1| protein phosphatase 2 (formerly 2A), regulatory subunit B' [Arabidopsis thaliana] gi|85680893|sp|Q8RW96.2|2A5G_ARATH RecName: Full=Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform; Short=AtB' gamma; Short=PP2A, B' subunit, gamma isoform gi|2160694|gb|AAB58902.1| B' regulatory subunit of PP2A [Arabidopsis thaliana] gi|58652058|gb|AAW80854.1| At4g15415 [Arabidopsis thaliana] gi|110738471|dbj|BAF01161.1| phosphatase like protein [Arabidopsis thaliana] gi|332658198|gb|AEE83598.1| protein phosphatase 2 (formerly 2A), regulatory subunit B' [Arabidopsis thaliana] gi|332658199|gb|AEE83599.1| protein phosphatase 2 (formerly 2A), regulatory subunit B' [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query534
TAIR|locus:2089905546 AT3G21650 [Arabidopsis thalian 0.986 0.965 0.726 1.4e-204
TAIR|locus:505006470522 ATB' GAMMA [Arabidopsis thalia 0.956 0.978 0.730 1e-201
TAIR|locus:2009912492 AT1G13460 [Arabidopsis thalian 0.823 0.894 0.720 3.2e-175
TAIR|locus:2085099499 ATB' BETA [Arabidopsis thalian 0.808 0.865 0.663 1.1e-157
TAIR|locus:2092080477 ATB' DELTA "serine/threonine p 0.786 0.880 0.643 4.5e-152
TAIR|locus:2142619495 ATB' ALPHA [Arabidopsis thalia 0.829 0.894 0.608 5.1e-151
TAIR|locus:2179499500 AT5G25510 [Arabidopsis thalian 0.874 0.934 0.573 4.1e-149
TAIR|locus:2082677497 AT3G54930 [Arabidopsis thalian 0.850 0.913 0.572 1.9e-138
FB|FBgn0042693984 PP2A-B' "PP2A-B'" [Drosophila 0.779 0.422 0.550 1.6e-128
TAIR|locus:2092175529 AT3G26020 [Arabidopsis thalian 0.573 0.578 0.579 1.3e-126
TAIR|locus:2089905 AT3G21650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1979 (701.7 bits), Expect = 1.4e-204, P = 1.4e-204
 Identities = 393/541 (72%), Positives = 442/541 (81%)

Query:     1 MIKQILGKLPRKPSKSTNNESNGES-LNSTQVPXXXXXXX----XXXXXXXXXXXGSRLN 55
             MIKQI GKLPRKPSKS  N+SNGE  +N++                         GSR+ 
Sbjct:     1 MIKQIFGKLPRKPSKSLQNDSNGEGGVNNSYYASNSSTTSISKPSSTSSKSSSASGSRVA 60

Query:    56 NGTLAPTTKS-----NQGKK--SAPTATQVGSLLNSS-VYEALPSFKDVPSAEKPNLFIR 107
             NGTLAP + S     NQGKK        Q G   +S  VYEALPSF+DVP +EKPNLFI 
Sbjct:    61 NGTLAPNSMSSNRNTNQGKKPLGGDAVVQAGPFPSSGGVYEALPSFRDVPISEKPNLFIG 120

Query:   108 KLNMCCVIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFR 167
             KL+MCCV+FDF+DP+KNLKEK+IKRQTLLELVDY++SV  KFN+V+MQE+TKMVAVNLFR
Sbjct:   121 KLSMCCVVFDFSDPSKNLKEKEIKRQTLLELVDYVASVGFKFNDVSMQELTKMVAVNLFR 180

Query:   168 TFTSSNSDNKGLDMYDXXXXXXXXXXXXXHLQVVYEILLRFVASPETDAKLAKRYIDHSF 227
             TF S+N ++K L+++D             H+QVVYEILLRFVASP TDAKLAKRYIDHSF
Sbjct:   181 TFPSANHESKILEIHDMDDEEPSLEPAWPHVQVVYEILLRFVASPMTDAKLAKRYIDHSF 240

Query:   228 VLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAE 287
             VL+LLDLFDSEDQREREYLKTILHR+YGKFMVHRP+IRKAINNIFYRFI ETEKHNGIAE
Sbjct:   241 VLKLLDLFDSEDQREREYLKTILHRVYGKFMVHRPYIRKAINNIFYRFISETEKHNGIAE 300

Query:   288 LLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLAD 347
             LLEILGSIINGFALPLKEEHKLFL+RALIPLHKPKC S+YHQQLSYCI QFVEKDFKLAD
Sbjct:   301 LLEILGSIINGFALPLKEEHKLFLLRALIPLHKPKCSSVYHQQLSYCIVQFVEKDFKLAD 360

Query:   348 TVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVA 407
             TVIRGLLKYWP+TNSSKEVMFLGELEEVLEATQAAEFQRCMVPL RQI RCLNSSHFQVA
Sbjct:   361 TVIRGLLKYWPVTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLSRQIARCLNSSHFQVA 420

Query:   408 ERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQA 467
             ERALFLWNNDHIRNLI  N KVI+PI+FPALERNTRGHWNQAVQSLT+NVRK+  + DQ 
Sbjct:   421 ERALFLWNNDHIRNLITQNHKVIMPIVFPALERNTRGHWNQAVQSLTINVRKVLCEIDQV 480

Query:   468 LFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRAV-SNEAVLVSKFIYSVAVAPST 526
             LFDECLA+FQ +E+ + E + KRE TW+RLEDLA S+ V +NEAVLV +F+ SV +  S+
Sbjct:   481 LFDECLAKFQVEEVNKTEVKAKRERTWQRLEDLATSKTVVTNEAVLVPRFVSSVNLTTSS 540

Query:   527 S 527
             S
Sbjct:   541 S 541
GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0007165 "signal transduction" evidence=IEA;ISS
GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=IDA
TAIR|locus:505006470 ATB' GAMMA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009912 AT1G13460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085099 ATB' BETA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092080 ATB' DELTA "serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142619 ATB' ALPHA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179499 AT5G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082677 AT3G54930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0042693 PP2A-B' "PP2A-B'" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2092175 AT3G26020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q147382A5D_HUMANNo assigned EC number0.49300.91940.8156yesno
Q286532A5D_RABITNo assigned EC number0.49390.91010.8293yesno
Q9LVE22A5Z_ARATHNo assigned EC number0.75460.97370.9523nono
Q8RW962A5G_ARATHNo assigned EC number0.75660.95880.9808yesno
Q8LF362A5T_ARATHNo assigned EC number0.74090.82390.8943nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XIV.3452.1
serine/threonine protein phosphatase 2A (510 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query534
pfam01603405 pfam01603, B56, Protein phosphatase 2A regulatory 0.0
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 2e-62
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 5e-10
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 family) Back     alignment and domain information 
 Score =  596 bits (1538), Expect = 0.0
 Identities = 252/412 (61%), Positives = 312/412 (75%), Gaps = 9/412 (2%)

Query: 93  FKDVPSAEKPNLFIRKLNMCCVIFDFNDPAKNLKEKDIKRQTLLELVDY--MSSVTSKFN 150
             DVPS E  +LF++KL  CCVI DF+DP  +LK K+IKRQTL E+VDY   S +  K  
Sbjct: 1   LPDVPSPEFKDLFLKKLKQCCVICDFSDPNSDLKAKEIKRQTLKEIVDYVSNSDIVGKLT 60

Query: 151 EVAMQEITKMVAVNLFRTFTSSNSDNKGLDMYDPEEEEPAMEPAWPHLQVVYEILLRFVA 210
           E    EI KM+AVN+FR        N  LD    +++EP +EP+WPHL +VYEILLRF+ 
Sbjct: 61  EDLYDEIFKMIAVNIFRPLPPI--PNPSLDP---DDDEPFLEPSWPHLSLVYEILLRFIE 115

Query: 211 SPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINN 270
           SP  D    K+YIDHSF+ RLLDLFDS D RER+ LKT LHRIYGKF   RPFIRKAIN+
Sbjct: 116 SPPFDPL--KKYIDHSFIKRLLDLFDSPDPRERDQLKTFLHRIYGKFPGLRPFIRKAINS 173

Query: 271 IFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQ 330
           I YRFI+ETEK NG+AELLEILGSIINGFALPLKEEHK FL++ L+PLHK K +S+YHQQ
Sbjct: 174 ILYRFIYETEKPNGVAELLEILGSIINGFALPLKEEHKDFLLKVLLPLHKSKHLSLYHQQ 233

Query: 331 LSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVP 390
           LSYC+ QF+EKD  LA+ VIRGLLK+WP+TNSSKEV+FL ELEE+LE     EFQ+ MVP
Sbjct: 234 LSYCVVQFIEKDPSLAEEVIRGLLKHWPVTNSSKEVLFLDELEEILEKIPPEEFQKIMVP 293

Query: 391 LFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAV 450
           LF+ + RC++S HFQVAERAL LWNN++  NLI+ N K+ILPI+FPAL RN + HWNQ+V
Sbjct: 294 LFKILARCISSPHFQVAERALKLWNNEYFVNLISDNSKLILPILFPALYRNAKNHWNQSV 353

Query: 451 QSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAA 502
           ++L LNV K+  + D  LFDEC  +++E E KEK+ ++KR+ TW R+ + AA
Sbjct: 354 RNLALNVLKLLMEIDPDLFDECGNKYKEKEAKEKKKEKKRKKTWARIAEAAA 405

Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits (See also pfam01240), this family is called the B56 family. Length = 405
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 534
KOG2085457 consensus Serine/threonine protein phosphatase 2A, 100.0
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 97.36
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 92.28
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 85.78
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 85.35
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-156  Score=1200.10  Aligned_cols=418  Identities=69%  Similarity=1.139  Sum_probs=413.0

Q ss_pred             ccccccCCCCCCCCCCCcHHHHHHHHhccCccccccCCCCCchhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 041798           84 SSVYEALPSFKDVPSAEKPNLFIRKLNMCCVIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAV  163 (534)
Q Consensus        84 ~~~~~~lP~l~dv~~~e~~~Lf~~Kl~~C~~ifDFsDp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~lte~v~~~i~~Mi~~  163 (534)
                      ..++++||+|+|||++|+++||++|+++||++|||+||.+|+++||+||+||+||+||+.++++++++.+|+++++|+++
T Consensus        39 ~~~l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~  118 (457)
T KOG2085|consen   39 NVELEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSV  118 (457)
T ss_pred             CCCceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence            44599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCCCCCCCCCCCCCCCCccCCCCCcchHHHHHHHHHHhhCCcCCHHHHhcccCHHHHHHHHhhcCCCChHHH
Q 041798          164 NLFRTFTSSNSDNKGLDMYDPEEEEPAMEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQRER  243 (534)
Q Consensus       164 NIFR~lPp~~~~~~~~~~~d~eedep~~e~aWpHLqlVYeillrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRER  243 (534)
                      ||||+|||..++++    +|+|||||++|++|||||+||++|+||++||++|+++||+|||++||++||++|||||||||
T Consensus       119 nifR~lpp~~n~~~----~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRER  194 (457)
T KOG2085|consen  119 NIFRTLPPSVNPTG----FDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPRER  194 (457)
T ss_pred             HhhccCCcccCCCc----CCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHH
Confidence            99999999998864    89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhccCCCCC
Q 041798          244 EYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKC  323 (534)
Q Consensus       244 d~LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~  323 (534)
                      |+|||+|||||||||++|+|||++|||+||+|||||++|||||||||||||||||||+|||||||+||.|||||||++++
T Consensus       195 e~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~  274 (457)
T KOG2085|consen  195 EFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKS  274 (457)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCC
Q 041798          324 VSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSH  403 (534)
Q Consensus       324 ~~~y~~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~h  403 (534)
                      ++.||+||+|||+||++|||+|++.||+||+||||+|||+||||||+||||||++++|.+|++||+|||+|||+|++|+|
T Consensus       275 l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~H  354 (457)
T KOG2085|consen  275 LSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPH  354 (457)
T ss_pred             ccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 041798          404 FQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKE  483 (534)
Q Consensus       404 fqVAErAL~~w~N~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e~D~~lf~~c~~~~~~~~~~~  483 (534)
                      ||||||||++|||+||+++|++|+++|+|||||+||+++++|||++|+++++||+|+|||||++||++|+++|++++.++
T Consensus       355 FQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~  434 (457)
T KOG2085|consen  355 FQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKE  434 (457)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Q 041798          484 KETQEKRESTWKRLEDLAASRA  505 (534)
Q Consensus       484 ~~~~~~r~~~W~~l~~~A~~~~  505 (534)
                      ++.+++|++.|++||++|+.++
T Consensus       435 ~~~~~~re~~W~~le~~~~~~~  456 (457)
T KOG2085|consen  435 KETEEKREETWKRLEELAAENP  456 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999998765

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query534
2npp_B449 Structure Of The Protein Phosphatase 2a Holoenzyme 1e-128
2iae_B407 Crystal Structure Of A Protein Phosphatase 2a (Pp2a 1e-127
3fga_B403 Structural Basis Of Pp2a And Sgo Interaction Length 1e-125
2nyl_B388 Crystal Structure Of Protein Phosphatase 2a (Pp2a) 1e-118
2jak_A392 Human Pp2a Regulatory Subunit B56g Length = 392 1e-115
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme Length = 449 Back     alignment and structure 
Iteration: 1

 Score =  453 bits (1166), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/411 (53%), Positives = 299/411 (72%), Gaps = 3/411 (0%)
Query: 94  KDVPSAEKPNLFIRKLNMCCVIFDF-NDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEV 152
           +DVP A++  LFI+KL  CCV+FDF +DP  +LK K++KR  L E+V+Y++   +   E 
Sbjct: 31  RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 90
Query: 153 AMQEITKMVAVNLFRTFTSSNSDNKGLDMYDXXXXXXXXXXXXXHLQVVYEILLRFVASP 212
              E+  M AVN+FRT   S S+  G + +D             HLQ+VYE  LRF+ SP
Sbjct: 91  IYPEVVHMFAVNMFRTLPPS-SNPTGAE-FDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 148
Query: 213 ETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIF 272
           +    +AK+YID  FVL+LL+LFDSED RER++LKT LHRIYGKF+  R +IRK INNIF
Sbjct: 149 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 208
Query: 273 YRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLS 332
           YRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +S+YH QL+
Sbjct: 209 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 268
Query: 333 YCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLF 392
           YC+ QF+EKD  L + V+  LLKYWP T+S KEVMFL ELEE+L+  + +EF + M PLF
Sbjct: 269 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 328
Query: 393 RQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQS 452
           RQ+ +C++S HFQVAERAL+ WNN++I +LI+ N   ILPI+FP+L RN++ HWN+ +  
Sbjct: 329 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG 388
Query: 453 LTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAAS 503
           L  N  K+F + +Q LFD+C  +F+ +++KEK   ++RE  W ++E+LA +
Sbjct: 389 LIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKA 439
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 407 Back     alignment and structure
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction Length = 403 Back     alignment and structure
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 388 Back     alignment and structure
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g Length = 392 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query534
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 0.0
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 0.0
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-171
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Length = 449 Back     alignment and structure
 Score =  547 bits (1410), Expect = 0.0
 Identities = 230/419 (54%), Positives = 309/419 (73%), Gaps = 3/419 (0%)

Query: 87  YEALPSFKDVPSAEKPNLFIRKLNMCCVIFDF-NDPAKNLKEKDIKRQTLLELVDYMSSV 145
              L   +DVP A++  LFI+KL  CCV+FDF +DP  +LK K++KR  L E+V+Y++  
Sbjct: 24  PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHN 83

Query: 146 TSKFNEVAMQEITKMVAVNLFRTFTSSNSDNKGLDMYDPEEEEPAMEPAWPHLQVVYEIL 205
            +   E    E+  M AVN+FRT   S+  N     +DPEE+EP +E AWPHLQ+VYE  
Sbjct: 84  RNVITEPIYPEVVHMFAVNMFRTLPPSS--NPTGAEFDPEEDEPTLEAAWPHLQLVYEFF 141

Query: 206 LRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIR 265
           LRF+ SP+    +AK+YID  FVL+LL+LFDSED RER++LKT LHRIYGKF+  R +IR
Sbjct: 142 LRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR 201

Query: 266 KAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVS 325
           K INNIFYRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +S
Sbjct: 202 KQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS 261

Query: 326 MYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQ 385
           +YH QL+YC+ QF+EKD  L + V+  LLKYWP T+S KEVMFL ELEE+L+  + +EF 
Sbjct: 262 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFV 321

Query: 386 RCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGH 445
           + M PLFRQ+ +C++S HFQVAERAL+ WNN++I +LI+ N   ILPI+FP+L RN++ H
Sbjct: 322 KIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTH 381

Query: 446 WNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASR 504
           WN+ +  L  N  K+F + +Q LFD+C  +F+ +++KEK   ++RE  W ++E+LA + 
Sbjct: 382 WNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKAN 440
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Length = 403 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Length = 392 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query534
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 100.0
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 94.79
1qgr_A 876 Protein (importin beta subunit); transport recepto 94.48
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 94.07
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 93.03
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 92.53
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 92.04
1qgr_A 876 Protein (importin beta subunit); transport recepto 91.7
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 91.68
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 88.29
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 86.1
2x19_B963 Importin-13; nuclear transport, protein transport; 85.18
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 84.85
2km4_A142 Regulator of TY1 transposition protein 103; CTD-in 81.71
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 81.16
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 80.38
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 80.36
4fu3_A135 Regulation of nuclear PRE-mRNA domain-containing 1 80.13
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
Probab=100.00  E-value=5.7e-139  Score=1111.44  Aligned_cols=419  Identities=55%  Similarity=0.985  Sum_probs=382.4

Q ss_pred             cccCCCCCCCCCCCcHHHHHHHHhccCccccc-cCCCCCchhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhh
Q 041798           87 YEALPSFKDVPSAEKPNLFIRKLNMCCVIFDF-NDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNL  165 (534)
Q Consensus        87 ~~~lP~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~lte~v~~~i~~Mi~~NI  165 (534)
                      +++||+|+|||++|+++||++||++||++||| +||.+|+++||+||+||+||++|++++++++||++|+++++||++||
T Consensus        24 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni  103 (449)
T 2npp_B           24 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM  103 (449)
T ss_dssp             --------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHH
T ss_pred             CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence            45999999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCccCCCCCcchHHHHHHHHHHhhCCcCCHHHHhcccCHHHHHHHHhhcCCCChHHHHH
Q 041798          166 FRTFTSSNSDNKGLDMYDPEEEEPAMEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREY  245 (534)
Q Consensus       166 FR~lPp~~~~~~~~~~~d~eedep~~e~aWpHLqlVYeillrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~  245 (534)
                      ||++||.+++++  .+||+|||||++||+|||||+||++|+|||+|++|++++||+|||++||++|+++||||||||||+
T Consensus       104 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~  181 (449)
T 2npp_B          104 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF  181 (449)
T ss_dssp             CCCCCCCSSCCS--SSSCGGGCCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHH
T ss_pred             CCCCCCCCCccc--ccCCCccccccccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence            999999887654  379999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCchHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhccCCCCCcc
Q 041798          246 LKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVS  325 (534)
Q Consensus       246 LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~  325 (534)
                      ||+|||||||||+++|+|||++|+|+|++||||+++||||+|||||+|||||||++|||+||+.||.+||||||++++++
T Consensus       182 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~  261 (449)
T 2npp_B          182 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS  261 (449)
T ss_dssp             HHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHH
Q 041798          326 MYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQ  405 (534)
Q Consensus       326 ~y~~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfq  405 (534)
                      .||+||+||++||++|||+|++.|++||+||||+||++|||+||+||++||+.++|++|+++++|||++||+|++|+|||
T Consensus       262 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfq  341 (449)
T 2npp_B          262 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ  341 (449)
T ss_dssp             GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHH
T ss_pred             HhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 041798          406 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKE  485 (534)
Q Consensus       406 VAErAL~~w~N~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e~D~~lf~~c~~~~~~~~~~~~~  485 (534)
                      ||||||++|+|++|+++|++|++.|+|+|||+|++++++|||++||++|++|+++|||||+++|++|+++|+++++++++
T Consensus       342 VAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~~~~~~~~~~~~  421 (449)
T 2npp_B          342 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKL  421 (449)
T ss_dssp             HHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCC
Q 041798          486 TQEKRESTWKRLEDLAASRAVS  507 (534)
Q Consensus       486 ~~~~r~~~W~~l~~~A~~~~~~  507 (534)
                      ++++|+++|++|+++|++++..
T Consensus       422 ~~~~r~~~W~~i~~~A~~~~~~  443 (449)
T 2npp_B          422 KMKEREEAWVKIENLAKANPQV  443 (449)
T ss_dssp             TSCC------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999988753
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A* Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 534
d2jaka1343 a.118.1.20 (A:30-372) Serine/threonine-protein pho 1e-178
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  504 bits (1299), Expect = e-178
 Identities = 204/344 (59%), Positives = 262/344 (76%), Gaps = 3/344 (0%)

Query: 94  KDVPSAEKPNLFIRKLNMCCVIFDF-NDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEV 152
           +DVP A++  LFI+KL  CCV+FDF +DP  +LK K++KR  L E+V+Y++   +   E 
Sbjct: 2   RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 61

Query: 153 AMQEITKMVAVNLFRTFTSSNSDNKGLDMYDPEEEEPAMEPAWPHLQVVYEILLRFVASP 212
              E+  M AVN+FRT     S N     +DPEE+EP +E AWPHLQ+VYE  LRF+ SP
Sbjct: 62  IYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 119

Query: 213 ETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIF 272
           +    +AK+YID  FVL+LL+LFDSED RER++LKT LHRIYGKF+  R +IRK INNIF
Sbjct: 120 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 179

Query: 273 YRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLS 332
           YRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +S+YH QL+
Sbjct: 180 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 239

Query: 333 YCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLF 392
           YC+ QF+EKD  L + V+  LLKYWP T+S KEVMFL ELEE+L+  + +EF + M PLF
Sbjct: 240 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 299

Query: 393 RQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFP 436
           RQ+ +C++S HFQVAERAL+ WNN++I +LI+ N   ILPI+FP
Sbjct: 300 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP 343

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query534
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 100.0
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 92.37
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 91.19
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 89.56
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 88.73
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 86.1
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 85.32
d1ibrb_ 458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 84.82
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-116  Score=904.58  Aligned_cols=342  Identities=59%  Similarity=1.055  Sum_probs=324.1

Q ss_pred             CCCCCCCCcHHHHHHHHhccCccccc-cCCCCCchhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhhcccCCC
Q 041798           93 FKDVPSAEKPNLFIRKLNMCCVIFDF-NDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTS  171 (534)
Q Consensus        93 l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~lte~v~~~i~~Mi~~NIFR~lPp  171 (534)
                      |+|||++||++||++||++||++||| +||++|+++||+||++|+||++|+++++++++|++|+++++||++||||++||
T Consensus         1 l~d~~~~e~~~lf~~Kl~~C~~i~DF~~d~~~d~~~K~~K~~~L~el~~~~~~~~~~l~e~~~~~i~~Mi~~NifR~lPp   80 (343)
T d2jaka1           1 IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPP   80 (343)
T ss_dssp             CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCCCC
T ss_pred             CCCCChHHHHHHHHHHHHHhCcccCCCCCccccHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            68999999999999999999999999 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCccCCCCCcchHHHHHHHHHHhhCCcCCHHHHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 041798          172 SNSDNKGLDMYDPEEEEPAMEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILH  251 (534)
Q Consensus       172 ~~~~~~~~~~~d~eedep~~e~aWpHLqlVYeillrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLh  251 (534)
                      .+++.+  ++||+|||||+.|++|||||+||++|+||++++++|++.+++|||++||.+|+++|+||||||||+||++||
T Consensus        81 ~~~~~~--~~~~~e~d~~~~e~sWpHL~lVY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~  158 (343)
T d2jaka1          81 SSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLH  158 (343)
T ss_dssp             -----------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCCccc--cccCccccccccCCCCchHHHHHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            987643  479999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccCchHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhccCCCCCcccchhhH
Q 041798          252 RIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQL  331 (534)
Q Consensus       252 rIY~Kf~~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL  331 (534)
                      ||||||+++|++||++|+|+|++||||+++||||+|||||+|||||||++|||+||+.|+.++|+|||++++++.||+||
T Consensus       159 ~iy~kf~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL  238 (343)
T d2jaka1         159 RIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL  238 (343)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 041798          332 SYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERAL  411 (534)
Q Consensus       332 ~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL  411 (534)
                      +||++||++|||+|+..+++||+||||+||++|||+||+||++||+.+++++|+++++|+|++||+|++|+|||||||||
T Consensus       239 ~~~v~~f~~kDp~l~~~~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~~~lf~~la~ci~S~h~qVAErAl  318 (343)
T d2jaka1         239 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERAL  318 (343)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcchHHHHHHhhccccccccccH
Q 041798          412 FLWNNDHIRNLINLNRKVILPIIFP  436 (534)
Q Consensus       412 ~~w~N~~i~~li~~n~~~IlPii~p  436 (534)
                      ++|+|++|+++|++|++.|+|+|+|
T Consensus       319 ~~w~N~~~~~li~~n~~~i~Pii~P  343 (343)
T d2jaka1         319 YYWNNEYIMSLISDNAAKILPIMFP  343 (343)
T ss_dssp             GGGGCHHHHHHHHHTHHHHTTTSCC
T ss_pred             HHHCCHHHHHHHHhCccceEeeeCC
Confidence            9999999999999999999999997
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure