Citrus Sinensis ID: 041813

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540---
IFYEPFDDPFDGRWVVSENDDYKGVWKHSKSEGHDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKVHFIFKHKNPKSGEYVEHHLKDPPSVPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDEDSPAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLIENPNYNGIWKPRQIQNPHYFEVAEPNFEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTWKPKFEVEKAKHKAEKAVAASSDSFTRIRKGLFGLLYKIADIPFLNAYKSKIIEVLKRGEEQPNITVGILFSIFFIILTIVVTTLSGGKEKPPVCLQSKLIYFVGPRHETCFKVLEFPCLYMQANVTQGKMGMAAAQTSNNQRSTKEKESETKKATATAAAPPRRKSTRRDA
ccccccccccccccEEccccccccEEEEEcccccccccEEEccccccEEEEEcccccccccccEEEEEEEEEccccccccccEEEcccccccccccccccccccEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccEEEEEEccccEEEEEEccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccEEEEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccHHHHHHHHcccccccccccccccccc
ccHHHccccHHccccEccccccccEEEEEccccccccEEEEccHHHHHHHHcccccccccccccEEEEEEEEEccccccccEEEEEcccccccccHHHccccccEEEEEcccccccccEEEEEEEEccccccEEEEHccccccccccccccEEEEEEEccccEEEEEEccEEEEccccccccccccccccccccccccccccccHcHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccEEEEEEEEEccHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHcHHHHHcccHHHHHHHHHccHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHcccHHHHHccccccccccccccc
ifyepfddpfdgrwvvsenddykgvwkhskseghddyglLVSEKARKYAIVKELNENLNIKSQKVILQYDVRLQNELECGGAYLKFLQQqstgwkpqefdnnspysimfgpdkcgntnkVHFIFKhknpksgeyvehhlkdppsvpsdkfshvytavlqpdnILQILIDGkeekktyflsekdfdppliptkmipdpddkkpedwderakipdpeavkpgdwdedspaeieddeavkpegwlddeaeeiedpeaskpedwdeeedgeweapkvanpkcaeapgcgkwrrpmksnpaykgkwhaplienpnyngiwkprqiqnphyfevaepnfepisavgieiwtmqdgilfdnILITCDENVADLYRETTWKPKFEVEKAKHKAEKAVAASSDSFTRIRKGLFGLlykiadipflnAYKSKIIEVLKrgeeqpnitvGILFSIFFIILTIVVTTlsggkekppvclqskliyfvgprhetcfkvlefpclymqanvtqgkmgmaaaqtsnnqrstkeKESETKkatataaapprrkstrrda
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
IFYEPFDDPFDGRWVVSENDDYKGVWKHSKSEGHDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKVHFIFKHKNPKSGEYVEHHLKDPPSVPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEKDFDPPLIPTKMIpdpddkkpedwdeRAKIPDPEAVKPGDWDEDSPAEIEDDEAVKPEGWLddeaeeiedpeaSKPedwdeeedgeweAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLIENPNYNGIWKPRQIQNPHYFEVAEPNFEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTWKPkfevekakhkaekavaaSSDSFTRIRKGLFGLLYKIADIPFLNAYKSKIIEVLKRGEEQPNITvgilfsiffiiltivvttlsgGKEKPPVCLQSKLIYFVGPRHETCFKVLEFPCLYMQANVTQGKMGMAAAQTSNNQrstkekesetkkatataaapprrkstrrDA
*******DPFDGRWVVSENDDYKGVWKHSKSEGHDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKVHFIFKH***********************FSHVYTAVLQPDNILQILIDGKEEKKTYFLS*******************************************************************************************************************AYKGKWHAPLIENPNYNGIWKPRQIQNPHYFEVAEPNFEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTWKPKFEVE***************SFTRIRKGLFGLLYKIADIPFLNAYKSKIIEVLKRGEEQPNITVGILFSIFFIILTIVVTTLSGGKEKPPVCLQSKLIYFVGPRHETCFKVLEFPCLYMQANVT*********************************************
IFYEPFDDPFDGRWVVSENDDYKGVWKHSKSEGHDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQYDVRLQNELECGGAYLKFLQQQST********NNSPYSIMFGPDKCGNTNKVHFIFKHKNPKSGEYVEHHLKDPPSVPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEKDFDPPLIPTKMI*****KKPEDWDERAKIPDPEAVKP**WDEDSPAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLIENPNYNGIWKPRQIQNPHYFEVAEPNFEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTWKP***************************GLFGLLYKIADIPFLNAYKSKIIEVLKRGEEQPNITVGILFSIFFIILTIVVTT****************************************************************************************
IFYEPFDDPFDGRWVVSENDDYKGVWKHSKSEGHDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKVHFIFKHKNPKSGEYVEHHLKDPPSVPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEKDFDPPLIPTKMIPDP*********ERAKIPDPEAVKPGDWDEDSPAEIEDDEAVKPEGWLDDEAE**********************APKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLIENPNYNGIWKPRQIQNPHYFEVAEPNFEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTWKPKFE****************DSFTRIRKGLFGLLYKIADIPFLNAYKSKIIEVLKRGEEQPNITVGILFSIFFIILTIVVTTLSGGKEKPPVCLQSKLIYFVGPRHETCFKVLEFPCLYMQANVTQGKM*****************************************
IFYEPFDDPFDGRWVVSENDDYKGVWKHSKSEGHDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKVHFIFKHKNPKSGEYVEHHLKDPPSVPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDEDSPAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLIENPNYNGIWKPRQIQNPHYFEVAEPNFEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTWKPKFEVEKAKHKAEKAVAASSDSFTRIRKGLFGLLYKIADIPFLNAYKSKIIEVLKRGEEQPNITVGILFSIFFIILTIVVTTLSGGKEKPPVCLQSKLIYFVGPRHETCFKVLEFPCLYMQANVTQG*******************************************
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IFYEPFDDPFDGRWVVSENDDYKGVWKHSKSEGHDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKVHFIFKHKNPKSGEYVEHHLKDPPSVPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDEDSPAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLIENPNYNGIWKPRQIQNPHYFEVAEPNFEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTWKPKFEVEKAKHKAEKAVAASSDSFTRIRKGLFGLLYKIADIPFLNAYKSKIIEVLKRGEEQPNITVGILFSIFFIILTIVVTTLSGGKEKPPVCLQSKLIYFVGPRHETCFKVLEFPCLYMQANVTQGKMGMAAAQTSNNQRSTKEKESETKKATATAAAPPRRKSTRRDA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query543 2.2.26 [Sep-21-2011]
P29402530 Calnexin homolog 1 OS=Ara yes no 0.847 0.867 0.693 0.0
Q39817546 Calnexin homolog OS=Glyci yes no 0.848 0.844 0.711 0.0
Q38798532 Calnexin homolog 2 OS=Ara no no 0.922 0.941 0.623 0.0
Q39994540 Calnexin homolog OS=Helia N/A no 0.841 0.846 0.657 1e-166
O82709551 Calnexin homolog OS=Pisum N/A no 0.801 0.789 0.681 1e-162
P35564591 Calnexin OS=Mus musculus yes no 0.744 0.683 0.442 1e-105
Q5R440592 Calnexin OS=Pongo abelii yes no 0.744 0.682 0.442 1e-105
P35565591 Calnexin OS=Rattus norveg yes no 0.744 0.683 0.444 1e-105
P24643593 Calnexin OS=Canis familia yes no 0.751 0.688 0.436 1e-104
P27824592 Calnexin OS=Homo sapiens yes no 0.744 0.682 0.437 1e-104
>sp|P29402|CALX1_ARATH Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1 Back     alignment and function desciption
 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/460 (69%), Positives = 383/460 (83%)

Query: 1   IFYEPFDDPFDGRWVVSENDDYKGVWKHSKSEGHDDYGLLVSEKARKYAIVKELNENLNI 60
           + YE FD+PFDGRW+VS+N DY+GVWKH+KSEGH+DYGLLVSEKARKY IVKEL+E LN+
Sbjct: 30  VLYESFDEPFDGRWIVSKNSDYEGVWKHAKSEGHEDYGLLVSEKARKYGIVKELDEPLNL 89

Query: 61  KSQKVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKV 120
           K   V+LQY+VR Q  LECGGAYLK+L+ Q  GW PQ FD+ SPYSIMFGPDKCG TNKV
Sbjct: 90  KEGTVVLQYEVRFQEGLECGGAYLKYLRPQEAGWTPQGFDSESPYSIMFGPDKCGGTNKV 149

Query: 121 HFIFKHKNPKSGEYVEHHLKDPPSVPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLS 180
           HFI KHKNPKSGEYVEHHLK PPSVP DK SHVYTA+L+PDN ++IL+DG+E+KK   LS
Sbjct: 150 HFILKHKNPKSGEYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKKKANLLS 209

Query: 181 EKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDEDSPAEIEDDEAVKPEG 240
            +DF+P LIP K IPDP+DKKPEDWDERAKIPDP AVKP DWDED+P EIED+EA KPEG
Sbjct: 210 GEDFEPALIPAKTIPDPEDKKPEDWDERAKIPDPNAVKPEDWDEDAPMEIEDEEAEKPEG 269

Query: 241 WLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGK 300
           WLDDE EE++DPEA+KPEDWD+EEDG WEAPK+ NPKC  APGCG+W+RPMK NPAYKGK
Sbjct: 270 WLDDEPEEVDDPEATKPEDWDDEEDGMWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGK 329

Query: 301 WHAPLIENPNYNGIWKPRQIQNPHYFEVAEPNFEPISAVGIEIWTMQDGILFDNILITCD 360
           W +PLI+NP Y GIWKPR I NP YFE+  P++EPI+A+GIEIWTMQDGILFDNILI  D
Sbjct: 330 WSSPLIDNPAYKGIWKPRDIPNPDYFELDRPDYEPIAAIGIEIWTMQDGILFDNILIAKD 389

Query: 361 ENVADLYRETTWKPKFEVEKAKHKAEKAVAASSDSFTRIRKGLFGLLYKIADIPFLNAYK 420
           E VA+ YR+TTWKPKF+VEK K KAE+  A S+D     +K +F LL K+AD+ FL+AYK
Sbjct: 390 EKVAETYRQTTWKPKFDVEKEKQKAEEEAAGSADGLKSYQKVVFDLLNKVADLSFLSAYK 449

Query: 421 SKIIEVLKRGEEQPNITVGILFSIFFIILTIVVTTLSGGK 460
           SKI E++++ E+QPN+T+G+L +I  +  ++ +  + GGK
Sbjct: 450 SKITELIEKAEQQPNLTIGVLVAIVVVFFSLFLKLIFGGK 489
Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q39817|CALX_SOYBN Calnexin homolog OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|Q38798|CALX2_ARATH Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2 Back     alignment and function description
>sp|Q39994|CALX_HELTU Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1 Back     alignment and function description
>sp|O82709|CALX_PEA Calnexin homolog OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|P35564|CALX_MOUSE Calnexin OS=Mus musculus GN=Canx PE=1 SV=1 Back     alignment and function description
>sp|Q5R440|CALX_PONAB Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2 Back     alignment and function description
>sp|P35565|CALX_RAT Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1 Back     alignment and function description
>sp|P24643|CALX_CANFA Calnexin OS=Canis familiaris GN=CANX PE=1 SV=3 Back     alignment and function description
>sp|P27824|CALX_HUMAN Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query543
297797141 1401 hypothetical protein ARALYDRAFT_496347 [ 0.856 0.331 0.690 0.0
225447725539 PREDICTED: calnexin homolog [Vitis vinif 0.933 0.940 0.651 0.0
147858623539 hypothetical protein VITISV_041895 [Viti 0.933 0.940 0.651 0.0
297797139529 calnexin 1 [Arabidopsis lyrata subsp. ly 0.856 0.879 0.690 0.0
15240353530 calnexin 1 [Arabidopsis thaliana] gi|231 0.847 0.867 0.693 0.0
31321896533 putative papillar cell-specific calnexin 0.926 0.943 0.619 0.0
351727521546 calnexin homolog precursor [Glycine max] 0.848 0.844 0.711 0.0
56744207546 calnexin [Glycine max] 0.848 0.844 0.709 0.0
356508884543 PREDICTED: calnexin homolog [Glycine max 0.848 0.848 0.711 0.0
255540003542 calnexin, putative [Ricinus communis] gi 0.847 0.848 0.698 0.0
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp. lyrata] gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/465 (69%), Positives = 386/465 (83%)

Query: 1    IFYEPFDDPFDGRWVVSENDDYKGVWKHSKSEGHDDYGLLVSEKARKYAIVKELNENLNI 60
            + YE FD+PFDGRW+VS+N DY+GVWKH+KSEGH+DYGLLVSEKARKY IVKEL+E LN+
Sbjct: 902  VLYESFDEPFDGRWIVSKNSDYEGVWKHAKSEGHEDYGLLVSEKARKYGIVKELDEPLNL 961

Query: 61   KSQKVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKV 120
            K   V+LQY+VR Q  LECGGAYLK+L+ Q  GW PQ FD+ SPYSIMFGPDKCG TNKV
Sbjct: 962  KEGTVVLQYEVRFQEGLECGGAYLKYLRPQEAGWTPQGFDSESPYSIMFGPDKCGATNKV 1021

Query: 121  HFIFKHKNPKSGEYVEHHLKDPPSVPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLS 180
            HFI KHKNPKSGEYVEHHLK PPSVP DK SHVYTA+L+PDN ++IL+DG+E+KK   LS
Sbjct: 1022 HFILKHKNPKSGEYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKKKANLLS 1081

Query: 181  EKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDEDSPAEIEDDEAVKPEG 240
             +DF+P LIP K IPDP+DKKPEDWDERAKIPDP AVKP DWDED+P EIED+EA KPEG
Sbjct: 1082 GEDFEPALIPAKTIPDPEDKKPEDWDERAKIPDPNAVKPDDWDEDAPMEIEDEEAEKPEG 1141

Query: 241  WLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGK 300
            WLDDE EE++DPEA+KPEDWD+EEDG WEAPK+ NPKC  APGCG+W+RPMK NPAYKGK
Sbjct: 1142 WLDDEPEEVDDPEATKPEDWDDEEDGMWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGK 1201

Query: 301  WHAPLIENPNYNGIWKPRQIQNPHYFEVAEPNFEPISAVGIEIWTMQDGILFDNILITCD 360
            W +PLI+NP Y GIWKP+ I NP YFE+  P++EPI+A+GIEIWTMQDGILFDNILI  D
Sbjct: 1202 WSSPLIDNPAYKGIWKPKDIPNPDYFELDRPDYEPIAAIGIEIWTMQDGILFDNILIAKD 1261

Query: 361  ENVADLYRETTWKPKFEVEKAKHKAEKAVAASSDSFTRIRKGLFGLLYKIADIPFLNAYK 420
            E VA+ YR+TTWKPKF+VEK K KAE+  A S+D     +K +F LL K+AD+ FL+AYK
Sbjct: 1262 EKVAETYRQTTWKPKFDVEKEKQKAEEEAAGSADGLKSYQKVVFDLLNKVADLSFLSAYK 1321

Query: 421  SKIIEVLKRGEEQPNITVGILFSIFFIILTIVVTTLSGGKEKPPV 465
            SKI E++++ E+QPN+T+G+L SI  +  ++ +  + GGK+  PV
Sbjct: 1322 SKITELIEKAEQQPNLTIGVLVSIVVVFFSLFLKLIFGGKKAAPV 1366

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225447725|ref|XP_002277666.1| PREDICTED: calnexin homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|147858623|emb|CAN83091.1| hypothetical protein VITISV_041895 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297797139|ref|XP_002866454.1| calnexin 1 [Arabidopsis lyrata subsp. lyrata] gi|297312289|gb|EFH42713.1| calnexin 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240353|ref|NP_200987.1| calnexin 1 [Arabidopsis thaliana] gi|231683|sp|P29402.1|CALX1_ARATH RecName: Full=Calnexin homolog 1; Flags: Precursor gi|16211|emb|CAA79144.1| calnexin homolog [Arabidopsis thaliana] gi|10176872|dbj|BAB10079.1| calnexin homolog precursor [Arabidopsis thaliana] gi|16649021|gb|AAL24362.1| calnexin homolog precursor [Arabidopsis thaliana] gi|21387169|gb|AAM47988.1| calnexin-like protein precursor [Arabidopsis thaliana] gi|21555674|gb|AAM63911.1| calnexin-like protein [Arabidopsis thaliana] gi|332010135|gb|AED97518.1| calnexin 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|31321896|gb|AAK84429.1| putative papillar cell-specific calnexin [Brassica napus] Back     alignment and taxonomy information
>gi|351727521|ref|NP_001235116.1| calnexin homolog precursor [Glycine max] gi|3334138|sp|Q39817.1|CALX_SOYBN RecName: Full=Calnexin homolog; Flags: Precursor gi|669003|gb|AAA80588.1| calnexin [Glycine max] Back     alignment and taxonomy information
>gi|56744207|dbj|BAD81043.1| calnexin [Glycine max] Back     alignment and taxonomy information
>gi|356508884|ref|XP_003523183.1| PREDICTED: calnexin homolog [Glycine max] Back     alignment and taxonomy information
>gi|255540003|ref|XP_002511066.1| calnexin, putative [Ricinus communis] gi|223550181|gb|EEF51668.1| calnexin, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query543
TAIR|locus:2159223530 CNX1 "calnexin 1" [Arabidopsis 0.804 0.824 0.622 1.1e-153
ASPGD|ASPL0000015815561 clxA [Emericella nidulans (tax 0.674 0.652 0.462 8e-85
UNIPROTKB|Q5R440592 CANX "Calnexin" [Pongo abelii 0.646 0.592 0.442 1.7e-82
UNIPROTKB|G4MTZ0577 MGG_01607 "Calnexin" [Magnapor 0.648 0.610 0.461 5.8e-82
UNIPROTKB|B4DGP8627 CANX "cDNA FLJ55574, highly si 0.646 0.559 0.437 9.4e-82
UNIPROTKB|P27824592 CANX "Calnexin" [Homo sapiens 0.646 0.592 0.437 9.4e-82
RGD|2266591 Canx "calnexin" [Rattus norveg 0.646 0.593 0.440 9.4e-82
UNIPROTKB|P35565591 Canx "Calnexin" [Rattus norveg 0.646 0.593 0.440 9.4e-82
UNIPROTKB|E1C2S5591 CANX "Uncharacterized protein" 0.672 0.617 0.434 1.2e-81
UNIPROTKB|E1C8M9582 CANX "Uncharacterized protein" 0.672 0.627 0.434 1.2e-81
TAIR|locus:2159223 CNX1 "calnexin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1499 (532.7 bits), Expect = 1.1e-153, P = 1.1e-153
 Identities = 272/437 (62%), Positives = 322/437 (73%)

Query:     1 IFYEPFDDPFDGRWVVSENDDYKGVWKHSKSEGHDDYGLLVSEKARKYAIVKELNENLNI 60
             + YE FD+PFDGRW+VS+N DY+GVWKH+KSEGH+DYGLLVSEKARKY IVKEL+E LN+
Sbjct:    30 VLYESFDEPFDGRWIVSKNSDYEGVWKHAKSEGHEDYGLLVSEKARKYGIVKELDEPLNL 89

Query:    61 KSQKVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKV 120
             K   V+LQY+VR Q  LECGGAYLK+L+ Q  GW PQ FD+ SPYSIMFGPDKCG TNKV
Sbjct:    90 KEGTVVLQYEVRFQEGLECGGAYLKYLRPQEAGWTPQGFDSESPYSIMFGPDKCGGTNKV 149

Query:   121 HFIFKHKNPKSGEYVEHHLKDPPSVPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLS 180
             HFI KHKNPKSGEYVEHHLK PPSVP DK SHVYTA+L+PDN ++IL+DG+E+KK   LS
Sbjct:   150 HFILKHKNPKSGEYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKKKANLLS 209

Query:   181 EKDFDPPLIPTKMIXXXXXXXXXXXXXRAKIPDPEAVKPGDWDEDSPAEIEDDEAVKPEG 240
              +DF+P LIP K I             RAKIPDP AVKP DWDED+P EIED+EA KPEG
Sbjct:   210 GEDFEPALIPAKTIPDPEDKKPEDWDERAKIPDPNAVKPEDWDEDAPMEIEDEEAEKPEG 269

Query:   241 WLXXXXXXXXXXXXSKPXXXXXXXXXXXXAPKVANPKCAEAPGCGKWRRPMKSNPAYKGK 300
             WL            +KP            APK+ NPKC  APGCG+W+RPMK NPAYKGK
Sbjct:   270 WLDDEPEEVDDPEATKPEDWDDEEDGMWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGK 329

Query:   301 WHAPLIENPNYNGIWKPRQIQNPHYFEVAEPNFEPISAVGIEIWTMQDGILFDNILITCD 360
             W +PLI+NP Y GIWKPR I NP YFE+  P++EPI+A+GIEIWTMQDGILFDNILI  D
Sbjct:   330 WSSPLIDNPAYKGIWKPRDIPNPDYFELDRPDYEPIAAIGIEIWTMQDGILFDNILIAKD 389

Query:   361 ENVADLYRETTWKPXXXXXXXXXXXXXXXXXSSDSFTRIRKGLFGLLYKIADIPFLNAYK 420
             E VA+ YR+TTWKP                 S+D     +K +F LL K+AD+ FL+AYK
Sbjct:   390 EKVAETYRQTTWKPKFDVEKEKQKAEEEAAGSADGLKSYQKVVFDLLNKVADLSFLSAYK 449

Query:   421 SKIIEVLKRGEEQPNIT 437
             SKI E++++ E+QPN+T
Sbjct:   450 SKITELIEKAEQQPNLT 466
GO:0005509 "calcium ion binding" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA
GO:0006457 "protein folding" evidence=IEA;RCA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0009408 "response to heat" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
ASPGD|ASPL0000015815 clxA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R440 CANX "Calnexin" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|G4MTZ0 MGG_01607 "Calnexin" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|B4DGP8 CANX "cDNA FLJ55574, highly similar to Calnexin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P27824 CANX "Calnexin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|2266 Canx "calnexin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P35565 Canx "Calnexin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2S5 CANX "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8M9 CANX "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39994CALX_HELTUNo assigned EC number0.65740.84160.8462N/Ano
Q39817CALX_SOYBNNo assigned EC number0.71140.84890.8443yesno
P29402CALX1_ARATHNo assigned EC number0.69340.84710.8679yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.8__2163__AT5G61790.1
annotation not avaliable (529 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query543
pfam00262359 pfam00262, Calreticulin, Calreticulin family 1e-160
PRK05901509 PRK05901, PRK05901, RNA polymerase sigma factor; P 0.002
>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family Back     alignment and domain information 
 Score =  460 bits (1186), Expect = e-160
 Identities = 193/365 (52%), Positives = 246/365 (67%), Gaps = 17/365 (4%)

Query: 2   FYEPFDDP--FDGRWVVSEND-DYKGVWKHSKSEGH----DDYGLLVSEKARKYAIVKEL 54
           F+E FDD   ++ RW+ S+   D  G WK    + +     D GL+  + A+ YAI  + 
Sbjct: 3   FFEQFDDDDLWEKRWIPSKAKKDDDGKWKVEAGKFYGGEEKDKGLVTKDDAKFYAISAKF 62

Query: 55  NENLNIKSQKVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKC 114
            +  + K + +++QY+V+LQ  ++CGGAY+K L +       ++F   +PY+IMFGPD C
Sbjct: 63  PKPFSNKGKTLVVQYEVKLQQGIDCGGAYIKLLSKDF---DQKDFSGETPYTIMFGPDIC 119

Query: 115 G-NTNKVHFIFKHKNPKSGEYVEHHLKDPPSVPSDKFSHVYTAVLQPDNILQILIDGKEE 173
           G +T KVHFIF+HK P +G   E HL   P    DK +H+YT +++PDN  +ILIDG+  
Sbjct: 120 GSDTKKVHFIFRHK-PITGYKEEKHLIKKPISRCDKLTHLYTLIIRPDNTFEILIDGEVV 178

Query: 174 KKTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDEDSPAEIEDD 233
           K    L  +DFDPP  P K IPDP DKKPEDWD+R KIPDPEA KP DWDED P  I D 
Sbjct: 179 KSGSLL--EDFDPPFNPPKEIPDPTDKKPEDWDDREKIPDPEAKKPEDWDEDEPEFIPDP 236

Query: 234 EAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKS 293
            AVKPEGWL+DE E I DP+A+KPEDWD+EEDGEWEAP + NPKC +A GCGK   PM  
Sbjct: 237 NAVKPEGWLEDEPEYIPDPDATKPEDWDDEEDGEWEAPMIPNPKCEKACGCGK--PPMIK 294

Query: 294 NPAYKGKWHAPLIENPNYNGIWKPRQIQNPHYFEVAEP-NFEPISAVGIEIWTMQDGILF 352
           NP YKGKW  P+I+NPNY G+WKPR+I NP YFE   P N EPI A+G E+W ++ GILF
Sbjct: 295 NPKYKGKWKPPMIDNPNYKGVWKPRKIPNPDYFEDPNPYNLEPIGAIGFELWQVKSGILF 354

Query: 353 DNILI 357
           DNILI
Sbjct: 355 DNILI 359

Length = 359
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 543
KOG0675558 consensus Calnexin [Posttranslational modification 100.0
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 100.0
KOG0674406 consensus Calreticulin [Posttranslational modifica 100.0
KOG0675558 consensus Calnexin [Posttranslational modification 100.0
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 99.98
KOG0674406 consensus Calreticulin [Posttranslational modifica 99.87
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4.3e-149  Score=1170.42  Aligned_cols=421  Identities=54%  Similarity=0.994  Sum_probs=390.6

Q ss_pred             ccccCCCC--CCCCceeccCC---------CCcceEEEcCCC---CCCCcceeeccccchhHHhhhcccccccCCCcEEE
Q 041813            2 FYEPFDDP--FDGRWVVSEND---------DYKGVWKHSKSE---GHDDYGLLVSEKARKYAIVKELNENLNIKSQKVIL   67 (543)
Q Consensus         2 F~E~Fd~~--w~~rWv~S~~~---------~y~G~W~~~~~~---~~~DkGLv~~~~ak~yaISa~l~kp~~~k~k~LVv   67 (543)
                      |+++||.+  |. |||.|.++         +|.|+|.++++.   .++|+|||+++.|||||||+.|++||+++.++|||
T Consensus        43 f~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVV  121 (558)
T KOG0675|consen   43 FADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPPKSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVV  121 (558)
T ss_pred             chhcccccccce-eeeeeecccccccchhhhccceeeeccCccccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEE
Confidence            78899863  45 89999874         899999999765   38999999999999999999999999999999999


Q ss_pred             EEEEeeccccccCCceeEeecccCCCCCCCCCCCCCCceEeecCCCCCCCCeEEEEEecCCCCCCcccccccCCCCC---
Q 041813           68 QYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKVHFIFKHKNPKSGEYVEHHLKDPPS---  144 (543)
Q Consensus        68 QYEVK~q~gldCGGaYiKLL~~~~~~~~~~~f~~~TpY~IMFGPDkCG~tnkvHfIf~~knp~tg~~ee~~lk~pp~---  144 (543)
                      |||||+|+||+|||||||||+.+.....+++|+++|||+|||||||||.+++|||||||+||+||+|+|||++.|+.   
T Consensus       122 QYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImFGPDKCG~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l~  201 (558)
T KOG0675|consen  122 QYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMFGPDKCGETNKVHFIFRHKNPITGEISEKHLKAPPSSLK  201 (558)
T ss_pred             EEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEeCccccCCcccEEEEEeeccCCCCeeehhhccCCCcccc
Confidence            99999999999999999999987788899999999999999999999999999999999999999999999999998   


Q ss_pred             -CCCCCCcceEEEEEeCCCceEEEeCCeEeeccccCcCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 041813          145 -VPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWD  223 (543)
Q Consensus       145 -~~~DklTHLYTLIl~pdntyeI~IDg~~~~~GsL~~~~Df~Pp~~Ppk~I~DP~d~KP~DWdd~~~IpDP~a~KPeDWD  223 (543)
                       ..+|++||||||||+|||||+|||||++|+.|||+  +||.||++||++|+||+|.||+|||+|++||||+|+||+|||
T Consensus       202 ~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll--~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWD  279 (558)
T KOG0675|consen  202 KPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLL--TDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWD  279 (558)
T ss_pred             cccccCCceeEEEEecCCCeEEEEecCcEEEecccc--cccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccC
Confidence             57799999999999999999999999999999999  899999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccCCCcccCCCcCCCcCcCCCCCCcccCCCCCCCCCCCCCCC
Q 041813          224 EDSPAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHA  303 (543)
Q Consensus       224 E~~P~~I~Dp~a~KPedW~ddep~~IpDP~a~KPedWdd~~dGeW~~P~I~NP~c~~~~gcG~W~~P~I~NP~YKG~W~p  303 (543)
                      |++|++|+|++|+||++|++|||++|+||+|+||+|||+++||+|++|+|.||+|..++|||+|++|||.||+|||+|.+
T Consensus       280 E~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~  359 (558)
T KOG0675|consen  280 EDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWIL  359 (558)
T ss_pred             cCCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCCCCCCCcCCCCCCCccCCC-CCcccceeeEEEeeecCCceEeeEEeeCCHHHHHHHHHhccCCchHHHHHh
Q 041813          304 PLIENPNYNGIWKPRQIQNPHYFEVAEP-NFEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTWKPKFEVEKAK  382 (543)
Q Consensus       304 p~I~NP~YkG~WkPr~I~NP~Y~ed~~p-~~~~i~~iG~ElW~~~~gilFDNI~I~~d~~~A~~~~~~t~~~k~~~E~~~  382 (543)
                      |||+||+|+|+|+||+|+||+||++.+| .+.+|+|||||||||+++|+|||||||+|+++|+.+++.||.+|..++++.
T Consensus       360 pmI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElWsMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~  439 (558)
T KOG0675|consen  360 PMIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELWSMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREK  439 (558)
T ss_pred             ccccCccccCccccccCCCcccccccCcccccchhhhhhhhhhcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccc
Confidence            9999999999999999999999999999 899999999999999999999999999999999999999999996655333


Q ss_pred             hHHhhhhhcCCcchhhhhhhhhhhhhhhcchhhHhhhhhhhHhHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 041813          383 HKAEKAVAASSDSFTRIRKGLFGLLYKIADIPFLNAYKSKIIEVLKRGEEQPNITVGILFSIFFIILTIVVTTLSGGKEK  462 (543)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (543)
                      . .                                  .   .+.+++++.+|++|..+++.+++.+. .+..||+++++.
T Consensus       440 ~-~----------------------------------~---~~~~~~~~~~~~~w~~~i~~~~~~v~-~i~~~c~~~k~k  480 (558)
T KOG0675|consen  440 P-F----------------------------------V---QQVMEAAEGHPWLWAIYILTLLLPVA-DITKFCAPVKSK  480 (558)
T ss_pred             h-H----------------------------------H---HHHHhhccccchHHHHHHHHhhhhHh-hhhhcccccccc
Confidence            1 0                                  0   26677777888888777777766543 444556555544


Q ss_pred             Ch
Q 041813          463 PP  464 (543)
Q Consensus       463 ~~  464 (543)
                      ..
T Consensus       481 ~~  482 (558)
T KOG0675|consen  481 IS  482 (558)
T ss_pred             hh
Confidence            33

>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query543
1jhn_A424 Crystal Structure Of The Lumenal Domain Of Calnexin 1e-82
3rg0_A332 Structural And Functional Relationships Between The 5e-32
3o0v_A273 Crystal Structure Of The Calreticulin Lectin Domain 7e-18
3o0w_A273 Structural Basis Of Carbohydrate Recognition By Cal 8e-17
3pos_A265 Crystal Structure Of The Globular Domain Of Human C 6e-16
1hhn_A101 Calreticulin P-Domain Length = 101 3e-07
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin Length = 424 Back     alignment and structure 
Iteration: 1

 Score =  303 bits (777), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 160/368 (43%), Positives = 217/368 (58%), Gaps = 17/368 (4%)
Query: 10  FDGRWVVSENDDYKGVWKHSKSEGHDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQY 69
           +DG+W V E        K +K  G  D GL++  +A+ +AI  +LN+     ++ +I+QY
Sbjct: 57  YDGKWEVDEM-------KETKLPG--DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQY 107
Query: 70  DVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKVHFIFKHKNP 129
           +V  QN +ECGGAY+K L + +      +F + +PY+IMFGPDKCG   K+HFIF+HKNP
Sbjct: 108 EVNFQNGIECGGAYVKLLSK-TPELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNP 166
Query: 130 KSGEYVEHHLKDP----PSVPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEKDFD 185
           K+G Y E H K P     +  +DK +H+YT +L PDN  +IL+D         L+  D  
Sbjct: 167 KTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLN--DMT 224
Query: 186 PPLIPTKMIXXXXXXXXXXXXXRAKIPDPEAVKPGDWDEDSPAEIEDDEAVKPEGWLXXX 245
           PP+ P++ I             R KIPDP+AVKP DW+ED+PA+I D+EA KP+GWL   
Sbjct: 225 PPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDE 284
Query: 246 XXXXXXXXXSKPXXXXXXXXXXXXAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPL 305
                     KP            AP++ANPKC  APGCG W+RPM  NP YKGKW  P+
Sbjct: 285 PEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPM 344
Query: 306 IENPNYNGIWKPRQIQNPHYFEVAEP-NFEPISAVGIEIWTMQDGILFDNILITCDENVA 364
           I+NPNY GIWKPR+I NP +FE  EP    P SA+G+E+W+M   I FDN ++  D  V 
Sbjct: 345 IDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVV 404
Query: 365 DLYRETTW 372
           D +    W
Sbjct: 405 DDWANDGW 412
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin And Arm Domains Of Calreticulin Length = 332 Back     alignment and structure
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273 Back     alignment and structure
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273 Back     alignment and structure
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin Length = 265 Back     alignment and structure
>pdb|1HHN|A Chain A, Calreticulin P-Domain Length = 101 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query543
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 1e-146
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 1e-93
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 2e-56
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 1e-11
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 2e-34
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 3e-15
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Length = 424 Back     alignment and structure
 Score =  426 bits (1097), Expect = e-146
 Identities = 189/398 (47%), Positives = 255/398 (64%), Gaps = 20/398 (5%)

Query: 2   FYEPFDDPFDGRWVVSENDD---------YKGVWKHSKSEGH---DDYGLLVSEKARKYA 49
           F + FD      W++S+            Y G W+  + +      D GL++  +A+ +A
Sbjct: 28  FADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHA 87

Query: 50  IVKELNENLNIKSQKVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMF 109
           I  +LN+     ++ +I+QY+V  QN +ECGGAY+K L + +      +F + +PY+IMF
Sbjct: 88  ISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSK-TPELNLDQFHDKTPYTIMF 146

Query: 110 GPDKCGNTNKVHFIFKHKNPKSGEYVEHHLKDPP----SVPSDKFSHVYTAVLQPDNILQ 165
           GPDKCG   K+HFIF+HKNPK+G Y E H K P     +  +DK +H+YT +L PDN  +
Sbjct: 147 GPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFE 206

Query: 166 ILIDGKEEKKTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDED 225
           IL+D         L   D  PP+ P++ I DP+D+KPEDWDER KIPDP+AVKP DW+ED
Sbjct: 207 ILVDQSIVNSGNLL--NDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNED 264

Query: 226 SPAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCG 285
           +PA+I D+EA KP+GWLDDE E + DP+A KPEDWDE+ DGEWEAP++ANPKC  APGCG
Sbjct: 265 APAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCG 324

Query: 286 KWRRPMKSNPAYKGKWHAPLIENPNYNGIWKPRQIQNPHYFEVAEP-NFEPISAVGIEIW 344
            W+RPM  NP YKGKW  P+I+NPNY GIWKPR+I NP +FE  EP    P SA+G+E+W
Sbjct: 325 VWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELW 384

Query: 345 TMQDGILFDNILITCDENVADLYRETTWKPKFEVEKAK 382
           +M   I FDN ++  D  V D +    W  K   + A 
Sbjct: 385 SMTSDIFFDNFIVCGDRRVVDDWANDGWGLKKAADGAA 422
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Length = 332 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Length = 101 Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Length = 38 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query543
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 100.0
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 100.0
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 100.0
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 99.9
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 99.54
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 99.33
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 97.75
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
Probab=100.00  E-value=6.9e-148  Score=1149.62  Aligned_cols=379  Identities=50%  Similarity=1.014  Sum_probs=352.5

Q ss_pred             CccccCCCCCCCCceeccCC---------CCcceEEEcCCCC---CCCcceeeccccchhHHhhhcccccccCCCcEEEE
Q 041813            1 IFYEPFDDPFDGRWVVSEND---------DYKGVWKHSKSEG---HDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQ   68 (543)
Q Consensus         1 ~F~E~Fd~~w~~rWv~S~~~---------~y~G~W~~~~~~~---~~DkGLv~~~~ak~yaISa~l~kp~~~k~k~LVvQ   68 (543)
                      +|+|+|+++|.+|||+|+++         +|.|+|+++++..   .+|+||||+++|||||||++|++||+|++|+||||
T Consensus        27 ~F~E~F~~~~~~rWv~S~~~k~~~~~~~~~y~G~w~~~~~~~~~~~~DkGL~~~~~ar~yaISa~~~kpf~~~~k~LVvQ  106 (424)
T 1jhn_A           27 YFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQ  106 (424)
T ss_dssp             SSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECSSSSCEEEE
T ss_pred             eEeeecCCCccCCceeCcccccccccccccCCeEEEEecCccCCCccccceeeccchhHHHHHHhhcCccccCCCCEEEE
Confidence            69999999999999999996         5889999998863   68999999999999999999999999999999999


Q ss_pred             EEEeeccccccCCceeEeecccCCCCCCCCCCCCCCceEeecCCCCCCCCeEEEEEecCCCCCCcccccccCCCCC----
Q 041813           69 YDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKVHFIFKHKNPKSGEYVEHHLKDPPS----  144 (543)
Q Consensus        69 YEVK~q~gldCGGaYiKLL~~~~~~~~~~~f~~~TpY~IMFGPDkCG~tnkvHfIf~~knp~tg~~ee~~lk~pp~----  144 (543)
                      ||||||++|+|||||||||+.. .++++++|+++|||+||||||+||.++||||||||+||+||+|+|+|+++++.    
T Consensus       107 YeVk~q~~idCGGaYiKLl~~~-~~~d~~~f~~~TpY~IMFGPD~CG~~~kvH~I~~~knp~~g~~~ekh~~~~~~~~~~  185 (424)
T 1jhn_A          107 YEVNFQNGIECGGAYVKLLSKT-PELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKT  185 (424)
T ss_dssp             EEECCTTCCSEEECCEEEEBCC-SSCCGGGCCSSCCEEEEEEEEEESSCCEEEEEEEEECTTTCCEEEECCCCCSSCCTH
T ss_pred             EEEEecccccccceEEEeecCc-ccCCHhHcCCCCCceEeccCCccCCCCeEEEEEecCCCCCCchhhhcccCCcccccc
Confidence            9999999999999999999853 35899999999999999999999999999999999999999999999998874    


Q ss_pred             CCCCCCcceEEEEEeCCCceEEEeCCeEeeccccCcCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 041813          145 VPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDE  224 (543)
Q Consensus       145 ~~~DklTHLYTLIl~pdntyeI~IDg~~~~~GsL~~~~Df~Pp~~Ppk~I~DP~d~KP~DWdd~~~IpDP~a~KPeDWDE  224 (543)
                      |++|++||||||||||||||+|+|||+++.+|||+  +||+|||+||++|+||+|+||+|||++++|+||+|+||+||||
T Consensus       186 ~~~D~~tHlYTLIl~pdntyei~ID~~~v~~GsL~--~D~~Pp~~pp~~I~Dp~~~KP~DWde~~~I~Dp~a~KPeDWde  263 (424)
T 1jhn_A          186 YFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLL--NDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNE  263 (424)
T ss_dssp             HHHSCSCEEEEEEEETTTEEEEEETTEEEEEEC---------CCSSCCCCBCTTCCCCTTCCCCSEEECSSCCCCTTCCS
T ss_pred             cccCCCceEEEEEEcCCCcEEEEECCceecccccH--HhccccCCCcccccCccccCccccccccccCCcccCCcccccc
Confidence            35799999999999999999999999999999999  8999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccCCCcccCCCcCCCcCcCCCCCCcccCCCCCCCCCCCCCCCC
Q 041813          225 DSPAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAP  304 (543)
Q Consensus       225 ~~P~~I~Dp~a~KPedW~ddep~~IpDP~a~KPedWdd~~dGeW~~P~I~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp  304 (543)
                      ++|.+|+||+|+||+||+++||++|+||+++||+||++++||+|++|+|+||+|+.++|||+|++|||.||+|||+|+||
T Consensus       264 ~~p~~I~Dp~A~KPedWdd~ep~~I~DP~a~KPedWd~~~~G~W~~P~i~NP~~~~~~gcG~W~~P~I~NP~ykG~W~pp  343 (424)
T 1jhn_A          264 DAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPP  343 (424)
T ss_dssp             SCCSEEECTTCCCCSSCBSSSCSCCBCTTCCCCTTCCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCEEECTTCCCSCCCC
T ss_pred             CCccccCCccccCCCCccccccccCCCcccCCccccccCCCccccCcccCCchhcccccCCcccCCCCCCccccCcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCcCCCCCCCccCCC-CCcccceeeEEEeeecCCceEeeEEeeCCHHHHHHHHHhccCCchHHHHHh
Q 041813          305 LIENPNYNGIWKPRQIQNPHYFEVAEP-NFEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTWKPKFEVEKAK  382 (543)
Q Consensus       305 ~I~NP~YkG~WkPr~I~NP~Y~ed~~p-~~~~i~~iG~ElW~~~~gilFDNI~I~~d~~~A~~~~~~t~~~k~~~E~~~  382 (543)
                      ||+||+|+|.|+||+|+||+|++|.+| +|.+|++||||||||++|++|||||||||+++|++++++||+.|+.+|.+.
T Consensus       344 ~I~NP~Ykg~W~p~~I~NP~y~~d~~p~~~~~i~~iG~ElW~~~~g~~FDNilItdd~~~A~~~~~~t~~~k~~~e~~~  422 (424)
T 1jhn_A          344 MIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWANDGWGLKKAADGAA  422 (424)
T ss_dssp             EEECTTCCCSCCCCBCCCTTCCCCCCTTCCCCEEEEEECCCCSSSCCBCEEEEEESSSHHHHHHHHHTTTC--------
T ss_pred             ccCCCcccccccccccCCccccCCCcccccCcccEEEEEeEEeeCCcEEeeEEEcCCHHHHHHHHHhhhhhhhhhhhhc
Confidence            999999999999999999999999999 899999999999999999999999999999999999999999999888543
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 543
d1jhna4249 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani 3e-71
d1jhna4249 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani 8e-06
d1jhna3142 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familia 2e-66
d1k9ca_74 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 1e-25
d1k91a_37 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 7e-13
d1k91a_37 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 0.002
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

 Score =  226 bits (577), Expect = 3e-71
 Identities = 78/242 (32%), Positives = 117/242 (48%), Gaps = 22/242 (9%)

Query: 1   IFYEPFDDPFDGRWVVSENDD---------YKGVWKH---SKSEGHDDYGLLVSEKARKY 48
            F + FD      W++S+            Y G W+     +++   D GL++  +A+ +
Sbjct: 11  YFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHH 70

Query: 49  AIVKELNENLNIKSQKVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIM 108
           AI  +LN+     ++ +I+QY+V  QN +ECGGAY+K L + +      +F + +PY+IM
Sbjct: 71  AISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSK-TPELNLDQFHDKTPYTIM 129

Query: 109 FGPDKCGNTNKVHFIFKHKNPKSGEYVEHHLKDP----PSVPSDKFSHVYTAVLQPDNIL 164
           FGPDKCG   K+HFIF+HKNPK+G Y E H K P     +  +DK +H+YT +L PDN  
Sbjct: 130 FGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSF 189

Query: 165 QILIDGKEEKKTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDE 224
           +IL+D         L      P       I         D      I   +     DW  
Sbjct: 190 EILVDQSIVNSGN-LEPFKMTPF----SAIGLELWSMTSDIFFDNFIVCGDRRVVDDWAN 244

Query: 225 DS 226
           D 
Sbjct: 245 DG 246
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249 Back     information, alignment and structure
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 142 Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 74 Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 37 Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 37 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query543
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.94
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.8
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.37
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 97.89
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 97.44
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=100.00  E-value=1.7e-84  Score=638.19  Aligned_cols=220  Identities=35%  Similarity=0.637  Sum_probs=204.8

Q ss_pred             CccccCCCCCCCCceeccCC---------CCcceEEEcCCCC---CCCcceeeccccchhHHhhhcccccccCCCcEEEE
Q 041813            1 IFYEPFDDPFDGRWVVSEND---------DYKGVWKHSKSEG---HDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQ   68 (543)
Q Consensus         1 ~F~E~Fd~~w~~rWv~S~~~---------~y~G~W~~~~~~~---~~DkGLv~~~~ak~yaISa~l~kp~~~k~k~LVvQ   68 (543)
                      +|+|+|+++|.+|||+|+++         +|.|+|.++++..   .+|+|||++++|||||||++|++||++++|+||||
T Consensus        11 ~F~E~Fd~~~~~rWi~S~akk~~~~~~~~~y~G~W~~~~~~~~~~~~DkGL~~~~~ak~yaIs~~l~~pf~~~~k~LVvQ   90 (249)
T d1jhna4          11 YFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQ   90 (249)
T ss_dssp             SSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECSSSSCEEEE
T ss_pred             eEEeccCCcccCCCEECcccccCcccceeeccceeeeecccccCCCCcccceecccchhhhhhccCCCCcccCCCCEEEE
Confidence            69999999999999999985         6899999997653   79999999999999999999999999999999999


Q ss_pred             EEEeeccccccCCceeEeecccCCCCCCCCCCCCCCceEeecCCCCCCCCeEEEEEecCCCCCCcccccccCCCCC----
Q 041813           69 YDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKVHFIFKHKNPKSGEYVEHHLKDPPS----  144 (543)
Q Consensus        69 YEVK~q~gldCGGaYiKLL~~~~~~~~~~~f~~~TpY~IMFGPDkCG~tnkvHfIf~~knp~tg~~ee~~lk~pp~----  144 (543)
                      ||||+|++|+|||||||||+.+ ..+++++|+++|||+||||||+||.++||||||||+||++|+++|+|++.|..    
T Consensus        91 YeVk~q~~~~CGGaYiKLl~~~-~~~~~~~f~~~TpY~IMFGPD~CG~~~kvHfIf~~~np~~~~~eek~~~~p~~~~~~  169 (249)
T d1jhna4          91 YEVNFQNGIECGGAYVKLLSKT-PELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKT  169 (249)
T ss_dssp             EEECCTTCCSEEECCEEEEBCC-SSCCGGGCCSSCCEEEEEEEEEESSCCEEEEEEEEECTTTCCEEEECCCCCSSCCTH
T ss_pred             EEeeeccCccccceEEEeecCc-ccCCHhHcCCCCCceEEeCCcccCCCCEEEEEEEcCCCCCccceeeeecCCCccccc
Confidence            9999999999999999999864 45789999999999999999999999999999999999999999999999854    


Q ss_pred             CCCCCCcceEEEEEeCCCceEEEeCCeEeeccccCcCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 041813          145 VPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDE  224 (543)
Q Consensus       145 ~~~DklTHLYTLIl~pdntyeI~IDg~~~~~GsL~~~~Df~Pp~~Ppk~I~DP~d~KP~DWdd~~~IpDP~a~KPeDWDE  224 (543)
                      +++|++||||||||+|||||||+|||+++++|||+   +|.  +.|+++|+||.++||+||||+++|+||+++||+||||
T Consensus       170 ~~~D~~tHLYTLIi~pdntfeI~iDg~~~~~G~le---~~~--~~p~~~i~dp~~~KP~DW~d~~~I~dp~~~kpedWde  244 (249)
T d1jhna4         170 YFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLE---PFK--MTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWAN  244 (249)
T ss_dssp             HHHSCSCEEEEEEEETTTEEEEEETTEEEEEECCC---TTC--CCCEEEEEECCCCSSSCCBCEEEEEESSSHHHHHHHH
T ss_pred             cCcCCCcccceEEECCCCeEEEEeCCccccCCCcC---ccc--CCCcccCCCcccCCCCCccccccccCCCcCChhhhhh
Confidence            45799999999999999999999999999999986   454  7789999999999999999999999999999999998


Q ss_pred             CC
Q 041813          225 DS  226 (543)
Q Consensus       225 ~~  226 (543)
                      ++
T Consensus       245 dt  246 (249)
T d1jhna4         245 DG  246 (249)
T ss_dssp             HT
T ss_pred             hc
Confidence            65
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure